Psyllid ID: psy8923

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270---
Protein Sequence
MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEEEEcccccccccccccccccccEEEEcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHcccccEEEcccccccccccccccccccEEEEEEcccccccccEEEEEEEEcccccccccEEEEEEcccEEEEEEccccccHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEccccccccccccHEEEcccHHHcccccccccccEEEEEEEEccEEccccHHHcccccEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHccccEEEccccccccccccccccccccEEEEEEEEcccccEEEEEEEEcccHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHccccccccccHHHHcccc
Coil and Loop (DISEMBL)
mvgfepgtfcmasksesvtiGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNkiknsgipvdlfhledlttldlshnnIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGIsyieggrtasgfftvedtvyttrlyrvhaplhqaqassihlepvpvlsesldpRFVFLLDAGLKLfiwngpkakNTFVFLLDAGLKLfiwngpkakNTFVFLLDAGLKLFiwngpkakntfKSKTRLLAEKI
Flexible Loop (DISEMBL)
MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIReeqgdeseEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFiwngpkakntfksktrllaeki
Low Complexity Region (SEG)
MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI
Disordered region (IsUnstruct)
********FCMA***ESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIRE******EEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGP*****************
Disordered Region (DISOPRED)
**GFE*GTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRT*********EEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLD***************TFVFLLDAGLKLFIWNG***********R******
Disordered Region (DISEMBL)
MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI
Disordered Region (DISPRO)
**GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTV**TVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKN*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	273	2.2.26 [Sep-21-2011]
Q9JJ28	1271	Protein flightless-1 homo	yes	N/A	0.413	0.088	0.666	4e-41
Q13045	1269	Protein flightless-1 homo	yes	N/A	0.413	0.089	0.666	6e-41
Q24020	1256	Protein flightless-1 OS=D	yes	N/A	0.435	0.094	0.629	9e-41
P34268	1257	Protein flightless-1 homo	yes	N/A	0.428	0.093	0.565	5e-33
Q7JQD3	367	Gelsolin-like protein 1 O	N/A	N/A	0.501	0.373	0.351	5e-13
O81644	976	Villin-2 OS=Arabidopsis t	yes	N/A	0.395	0.110	0.382	1e-10
O88398	819	Advillin OS=Mus musculus	no	N/A	0.413	0.137	0.344	7e-10
O75366	819	Advillin OS=Homo sapiens	no	N/A	0.413	0.137	0.344	2e-09
Q9WU06	829	Advillin OS=Rattus norveg	no	N/A	0.413	0.136	0.344	3e-09
O93510	778	Gelsolin OS=Gallus gallus	no	N/A	0.402	0.141	0.338	4e-09

>sp|Q9JJ28|FLII_MOUSE Protein flightless-1 homolog OS=Mus musculus GN=Flii PE=1 SV=1

 Score =  168 bits (425), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 95/120 (79%), Gaps = 7/120 (5%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           +ATLDK+ACSAIHAVNLRN+L AECRT+REE GDESEEFL +F+  ISYIEGG TASGF+
Sbjct: 552 EATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG-TASGFY 610

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct: 611 TVEDTHYVTRMYRVYG------KKNIKLEPVPLKGSSLDPRFVFLLDQGLDIYVWRGAQA 664

May play a role as coactivator in transcriptional activation by hormone-activated nuclear receptors (NR) and acts in cooperation with NCOA2 and CARM1. Involved in estrogen hormone signaling (By similarity). Essential for early embryonic development. May play a role in regulation of cytoskeletal rearrangements involved in cytokinesis and cell migration.
Mus musculus (taxid: 10090)

>sp|Q13045|FLII_HUMAN Protein flightless-1 homolog OS=Homo sapiens GN=FLII PE=1 SV=2

 Score =  167 bits (424), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/120 (66%), Positives = 95/120 (79%), Gaps = 7/120 (5%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           +ATLDK+ACSAIHAVNLRN+L AECRT+REE GDESEEFL +F+  ISYIEGG TASGF+
Sbjct: 552 EATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG-TASGFY 610

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct: 611 TVEDTHYVTRMYRVYG------KKNIKLEPVPLKGTSLDPRFVFLLDRGLDIYVWRGAQA 664

May play a role as coactivator in transcriptional activation by hormone-activated nuclear receptors (NR) and acts in cooperation with NCOA2 and CARM1. Involved in estrogen hormone signaling. Involved in early embryonic development (By similarity). May play a role in regulation of cytoskeletal rearrangements involved in cytokinesis and cell migration.

Homo sapiens (taxid: 9606)

>sp|Q24020|FLII_DROME Protein flightless-1 OS=Drosophila melanogaster GN=fliI PE=2 SV=1

 Score =  167 bits (422), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 96/124 (77%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           +ATLDKRAC+AIHAVNLRNFL A CRT+REEQGDESE+FLSLF T + YIEGGRTA+GF+
Sbjct: 550 EATLDKRACAAIHAVNLRNFLGARCRTVREEQGDESEQFLSLFETEVIYIEGGRTATGFY 609

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           T+E+ ++ TRLY VH     A  ++IHLEPV     SLDPR  F+LD G  ++IW G ++
Sbjct: 610 TIEEMIHITRLYLVH-----AYGATIHLEPVAPAITSLDPRHAFVLDLGTHIYIWMGERS 664

Query: 215 KNTF 218
           KNT 
Sbjct: 665 KNTL 668

May play a key role in embryonic cellularization by interacting with both the cytoskeleton and other cellular components. Alternatively, it may play a structural role in indirect flight muscle. Vital for embryonic development.

Drosophila melanogaster (taxid: 7227)

>sp|P34268|FLII_CAEEL Protein flightless-1 homolog OS=Caenorhabditis elegans GN=fli-1 PE=2 SV=2

 Score =  141 bits (355), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 69/122 (56%), Positives = 85/122 (69%), Gaps = 5/122 (4%)

Query: 96  ATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT 155
           A+LDK  CSA+HAV LRN L A CRT REE  DE+EEFL+LF   I YIEGGRT SGF+T
Sbjct: 562 ASLDKGMCSAVHAVGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGGRTISGFYT 621

Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAK 215
            E   + TRLYR          +++ +EPVP+  ESLDPRF FLLDAG  ++IW+G K++
Sbjct: 622 TEKPAHLTRLYRAG-----VNGTAVEMEPVPLSVESLDPRFCFLLDAGETIWIWSGYKSR 676

Query: 216 NT 217
            T
Sbjct: 677 IT 678

May play a key role in embryonic cellularization by interacting with both the cytoskeleton and other cellular components.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7JQD3|GELS1_LUMTE Gelsolin-like protein 1 OS=Lumbricus terrestris GN=AM PE=1 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 74/145 (51%), Gaps = 8/145 (5%)

Query: 94  TKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
           ++++ D+   +A   V L  FL  +    RE QG ESE F + F  G++ +EGG   +GF
Sbjct: 101 SQSSQDEYGTAAYKTVELDTFLDDKPVQHREVQGYESELFRNYFKQGLTILEGG-AETGF 159

Query: 154 FTVEDTVYTTRLYRVHAPLH-QAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGP 212
             V+ T Y  RL      LH   Q   I++  VP++ E LD + VF+LD GL L+ WNG 
Sbjct: 160 HHVKPTEYKPRL------LHFSGQKQQIYVHEVPLVKERLDHKDVFILDLGLTLYQWNGK 213

Query: 213 KAKNTFVFLLDAGLKLFIWNGPKAK 237
           ++     F     L L     PKA+
Sbjct: 214 ESSKEEGFKAMQYLGLMRSERPKAE 238

Calcium-regulated protein that binds to the plus (or barbed) ends of actin monomers or filaments, preventing monomer exchange (end-blocking or capping). Can promote the assembly of monomers into filaments (nucleation) as well as sever existing filaments.

Lumbricus terrestris (taxid: 6398)

>sp|O81644|VILI2_ARATH Villin-2 OS=Arabidopsis thaliana GN=VLN2 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 60/115 (52%), Gaps = 7/115 (6%)

Query: 97  TLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTV 156
           + D+   +A+  V L   L       RE QG ES++FLS F   I  +EGG  ASGF TV
Sbjct: 72  SQDEAGTAAVKTVELDAVLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGG-VASGFKTV 130

Query: 157 EDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
           E+ V+ TRLY            +I L+ VP    SL+   VF+LD   K++ +NG
Sbjct: 131 EEEVFETRLYTCKG------KRAIRLKQVPFARSSLNHDDVFILDTEEKIYQFNG 179

Ca(2+)-regulated actin-binding protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O88398|AVIL_MOUSE Advillin OS=Mus musculus GN=Avil PE=1 SV=2

 Score = 64.7 bits (156), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 6/119 (5%)

Query: 96  ATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT 155
           ++ D+++C+AI+   L ++L       RE Q  ES+ F   F  GI Y +GG  ASG   
Sbjct: 67  SSQDEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKQGIIYKKGG-VASGMKH 125

Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           VE     T  Y V   LH     +I    V +  +S +   VFLLD G+ +  WNGP++
Sbjct: 126 VE-----TNTYDVKRLLHVKGKRNIQATEVEMSWDSFNRGDVFLLDLGMVIIQWNGPES 179

Ca(2+)-regulated actin-binding protein. May have a unique function in the morphogenesis of neuronal cells which form ganglia. Required for SREC1-mediated regulation of neurite-like outgrowth. Plays a role in regenerative sensory axon outgrowth and remodeling processes after peripheral injury in neonates. Involved in the formation of long fine actin-containing filopodia-like structures in fibroblast. Plays a role in ciliogenesis.

Mus musculus (taxid: 10090)

>sp|O75366|AVIL_HUMAN Advillin OS=Homo sapiens GN=AVIL PE=1 SV=3

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 6/119 (5%)

Query: 96  ATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT 155
           ++ D+++C+AI+   L ++L       RE Q  ES+ F   F  GI Y +GG  ASG   
Sbjct: 67  SSQDEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKQGIIYKQGG-VASGMKH 125

Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           VE     T  Y V   LH     +I    V +  +S +   VFLLD G  +  WNGP++
Sbjct: 126 VE-----TNTYDVKRLLHVKGKRNIRATEVEMSWDSFNRGDVFLLDLGKVIIQWNGPES 179

Ca(2+)-regulated actin-binding protein. May have a unique function in the morphogenesis of neuronal cells which form ganglia. Required for SREC1-mediated regulation of neurite-like outgrowth. Plays a role in regenerative sensory axon outgrowth and remodeling processes after peripheral injury in neonates. Involved in the formation of long fine actin-containing filopodia-like structures in fibroblast. Plays a role in ciliogenesis.

Homo sapiens (taxid: 9606)

>sp|Q9WU06|AVIL_RAT Advillin OS=Rattus norvegicus GN=Avil PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 6/119 (5%)

Query: 96  ATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT 155
           ++ D+++C+AI+   L ++L       RE Q  ES+ F   F  GI Y +GG  ASG   
Sbjct: 70  SSQDEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKRGIIYKKGG-VASGMKH 128

Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           VE     T  Y V   LH     +I    V +  +S +   VFLLD G+ +  WNGP++
Sbjct: 129 VE-----TFSYDVKRLLHVKGKRNIRATEVEMSWDSFNQGDVFLLDLGMVIIQWNGPES 182

Ca(2+)-regulated actin-binding protein. May have a unique function in the morphogenesis of neuronal cells which form ganglia. Required for SREC1-mediated regulation of neurite-like outgrowth. Plays a role in regenerative sensory axon outgrowth and remodeling processes after peripheral injury in neonates. Involved in the formation of long fine actin-containing filopodia-like structures in fibroblast. Required for SREC1-mediated regulation of neurite-like outgrowth. Plays a role in ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|O93510|GELS_CHICK Gelsolin OS=Gallus gallus GN=GSN PE=2 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 8/118 (6%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
           +++ D+R  +AI  V + ++L  +    RE QG ES  FL  F +GI Y  GG  ASGF 
Sbjct: 115 ESSQDERGAAAIFTVQMDDYLQGKAVQHREVQGHESSTFLGYFKSGIKYKAGG-VASGFR 173

Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
             V + V   RL +V          ++    VPV  ES +    F+LD G  ++ W G
Sbjct: 174 HVVPNEVTVQRLLQVKG------RRTVRATEVPVSWESFNTGDCFILDLGSNIYQWCG 225

Calcium-regulated, actin-modulating protein that binds to the plus (or barbed) ends of actin monomers or filaments, preventing monomer exchange (end-blocking or capping). It can promote the assembly of monomers into filaments (nucleation) as well as sever filaments already formed. Plays a role in ciliogenesis.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
322792403	1241	hypothetical protein SINV_11551 [Solenop	0.435	0.095	0.717	2e-45
332025894	1241	Protein flightless-1 [Acromyrmex echinat	0.435	0.095	0.717	3e-45
270013772	1239	hypothetical protein TcasGA2_TC012416 [T	0.435	0.096	0.701	3e-45
189240920	1238	PREDICTED: similar to flightless-1 [Trib	0.435	0.096	0.701	3e-45
350411026	1239	PREDICTED: protein flightless-1-like [Bo	0.435	0.096	0.717	6e-45
307204876	1256	Protein flightless-1 [Harpegnathos salta	0.435	0.094	0.709	6e-45
340714520	1239	PREDICTED: protein flightless-1-like iso	0.435	0.096	0.717	9e-45
340714522	1248	PREDICTED: protein flightless-1-like iso	0.435	0.095	0.717	9e-45
307189820	1241	Protein flightless-1 [Camponotus florida	0.435	0.095	0.709	2e-44
383863785	1239	PREDICTED: protein flightless-1-like iso	0.435	0.096	0.709	2e-44

>gi|322792403|gb|EFZ16387.1| hypothetical protein SINV_11551 [Solenopsis invicta]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 104/124 (83%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KATLDKRAC+AIHAVNLRN+L A+CRTIREEQGDES+EFL LF++GI+YIEGGRT+SGF+
Sbjct: 552 KATLDKRACAAIHAVNLRNYLGAQCRTIREEQGDESDEFLMLFDSGITYIEGGRTSSGFY 611

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT   TRLYRVHA       +SIHLEPVPV  ESLDP +VF+LD G K+F+W G KA
Sbjct: 612 TVEDTPAITRLYRVHAA-----GASIHLEPVPVCIESLDPDYVFVLDTGNKIFMWYGKKA 666

Query: 215 KNTF 218
           K+T 
Sbjct: 667 KSTL 670

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025894|gb|EGI66050.1| Protein flightless-1 [Acromyrmex echinatior]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 104/124 (83%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KATLDKRAC+AIHAVNLRN+L A+CRTIREEQGDES+EFL LF++GI+YIEGGRT+SGF+
Sbjct: 552 KATLDKRACAAIHAVNLRNYLGAQCRTIREEQGDESDEFLMLFDSGITYIEGGRTSSGFY 611

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT   TRLYRVH     A  +SIHLEPVPV  ESLDP +VF+LD G K+F+W G KA
Sbjct: 612 TVEDTPAITRLYRVH-----AAGASIHLEPVPVCIESLDPGYVFVLDTGNKIFMWYGKKA 666

Query: 215 KNTF 218
           K+T 
Sbjct: 667 KSTL 670

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013772|gb|EFA10220.1| hypothetical protein TcasGA2_TC012416 [Tribolium castaneum]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 101/124 (81%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KA LDKRACSAIHAVNLRN+L A+CRTIREEQGDESEEFL+LF+T I+YIEGGRT SGFF
Sbjct: 554 KAPLDKRACSAIHAVNLRNYLGAQCRTIREEQGDESEEFLNLFDTQITYIEGGRTCSGFF 613

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVED ++ TR YR H         +IHLEPV + +ESLDP +VF+LD G+K+FIWNG KA
Sbjct: 614 TVEDNIFETRFYRSH-----IAGPTIHLEPVAICAESLDPGYVFILDTGMKIFIWNGKKA 668

Query: 215 KNTF 218
           KNT 
Sbjct: 669 KNTL 672

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240920|ref|XP_968304.2| PREDICTED: similar to flightless-1 [Tribolium castaneum]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/124 (70%), Positives = 101/124 (81%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KA LDKRACSAIHAVNLRN+L A+CRTIREEQGDESEEFL+LF+T I+YIEGGRT SGFF
Sbjct: 554 KAPLDKRACSAIHAVNLRNYLGAQCRTIREEQGDESEEFLNLFDTQITYIEGGRTCSGFF 613

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVED ++ TR YR H         +IHLEPV + +ESLDP +VF+LD G+K+FIWNG KA
Sbjct: 614 TVEDNIFETRFYRSH-----IAGPTIHLEPVAICAESLDPGYVFILDTGMKIFIWNGKKA 668

Query: 215 KNTF 218
           KNT 
Sbjct: 669 KNTL 672

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411026|ref|XP_003489215.1| PREDICTED: protein flightless-1-like [Bombus impatiens]

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KATLDKRAC+AIHAVNLRN+L A+CRTIREEQG+ES+EFL LF +GI+YIEGGRT+SGF+
Sbjct: 552 KATLDKRACAAIHAVNLRNYLGAQCRTIREEQGEESDEFLMLFESGITYIEGGRTSSGFY 611

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT   TRLYRVH     A  +SIHLEPVPV  +SLDP FVF+LD G K+FIW G KA
Sbjct: 612 TVEDTPSITRLYRVH-----AAGASIHLEPVPVCCDSLDPGFVFVLDTGNKIFIWYGKKA 666

Query: 215 KNTF 218
           K+T 
Sbjct: 667 KSTL 670

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204876|gb|EFN83431.1| Protein flightless-1 [Harpegnathos saltator]

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 104/124 (83%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KATLDKRAC+AIHAVNLRN+L A+CRTIREEQGDES+EFL LF++GI+YIEGGRT+SGF+
Sbjct: 567 KATLDKRACAAIHAVNLRNYLGAQCRTIREEQGDESDEFLMLFDSGITYIEGGRTSSGFY 626

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT   TRLYRVHA       +SIHLEPVP+  ESLDP +VF+LD G K+F+W G KA
Sbjct: 627 TVEDTPAITRLYRVHAA-----GASIHLEPVPISIESLDPGYVFVLDTGNKIFMWYGKKA 681

Query: 215 KNTF 218
           K+T 
Sbjct: 682 KSTL 685

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714520|ref|XP_003395775.1| PREDICTED: protein flightless-1-like isoform 1 [Bombus terrestris]

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KATLDKRAC+AIHAVNLRN+L A+CRTIREEQG+ES+EFL LF +GI+YIEGGRT+SGF+
Sbjct: 552 KATLDKRACAAIHAVNLRNYLGAQCRTIREEQGEESDEFLMLFESGITYIEGGRTSSGFY 611

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT   TRLYRVH     A  +SIHLEPVPV  +SLDP FVF+LD G K+FIW G KA
Sbjct: 612 TVEDTPSITRLYRVH-----AAGASIHLEPVPVRCDSLDPGFVFVLDTGNKIFIWYGKKA 666

Query: 215 KNTF 218
           K+T 
Sbjct: 667 KSTL 670

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714522|ref|XP_003395776.1| PREDICTED: protein flightless-1-like isoform 2 [Bombus terrestris]

 Score =  186 bits (472), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KATLDKRAC+AIHAVNLRN+L A+CRTIREEQG+ES+EFL LF +GI+YIEGGRT+SGF+
Sbjct: 561 KATLDKRACAAIHAVNLRNYLGAQCRTIREEQGEESDEFLMLFESGITYIEGGRTSSGFY 620

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT   TRLYRVH     A  +SIHLEPVPV  +SLDP FVF+LD G K+FIW G KA
Sbjct: 621 TVEDTPSITRLYRVH-----AAGASIHLEPVPVRCDSLDPGFVFVLDTGNKIFIWYGKKA 675

Query: 215 KNTF 218
           K+T 
Sbjct: 676 KSTL 679

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189820|gb|EFN74092.1| Protein flightless-1 [Camponotus floridanus]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KATLDKRAC+AIHAVNLRN+L A+CRTIREEQGDES+EFL LF++ I+YIEGGRT+SGF+
Sbjct: 552 KATLDKRACAAIHAVNLRNYLGAQCRTIREEQGDESDEFLMLFDSDITYIEGGRTSSGFY 611

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT   TRLYRVHA       +SIHLEPVPV  ESLDP +VF+LD G K+F+W G KA
Sbjct: 612 TVEDTPAITRLYRVHAA-----GASIHLEPVPVCIESLDPGYVFVLDTGNKIFMWYGKKA 666

Query: 215 KNTF 218
           K+T 
Sbjct: 667 KSTL 670

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863785|ref|XP_003707360.1| PREDICTED: protein flightless-1-like isoform 1 [Megachile rotundata]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/124 (70%), Positives = 103/124 (83%), Gaps = 5/124 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           KATLDKRAC+AIHAVNLRN+L A+CRTIREEQG+ES+EFL LF +GI+YIEGGRT+SGF+
Sbjct: 552 KATLDKRACAAIHAVNLRNYLGAQCRTIREEQGEESDEFLMLFESGITYIEGGRTSSGFY 611

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           TVEDT   TRLYRVHA       +SIHLEPVPV  +SLDP FVF+LD+G K+FIW G  A
Sbjct: 612 TVEDTPSITRLYRVHAA-----GASIHLEPVPVRFDSLDPGFVFVLDSGYKIFIWYGKNA 666

Query: 215 KNTF 218
           K+T 
Sbjct: 667 KSTL 670

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	273
FB|FBgn0000709	1256	fliI "flightless I" [Drosophil	0.432	0.093	0.634	4.9e-67
UNIPROTKB|J3QLG3	1258	FLII "Protein flightless-1 hom	0.413	0.089	0.666	4.5e-58
UNIPROTKB|Q13045	1269	FLII "Protein flightless-1 hom	0.413	0.089	0.666	4.8e-58
UNIPROTKB|F1N365	1268	FLII "Uncharacterized protein"	0.413	0.089	0.666	1.6e-57
UNIPROTKB|F1PUU4	1273	FLII "Uncharacterized protein"	0.413	0.088	0.666	2e-57
UNIPROTKB|J9P2Y3	1278	FLII "Uncharacterized protein"	0.413	0.088	0.666	2.1e-57
MGI|MGI:1342286	1271	Flii "flightless I homolog (Dr	0.413	0.088	0.666	4.1e-56
RGD|1307590	1270	Flii "flightless I homolog (Dr	0.413	0.088	0.658	2.4e-55
ZFIN|ZDB-GENE-071212-3	1260	flii "flightless I homolog (Dr	0.410	0.088	0.655	3e-53
UNIPROTKB|E1C6H2	1201	FLII "Uncharacterized protein"	0.413	0.094	0.683	2.6e-51

FB|FBgn0000709 fliI "flightless I" [Drosophila melanogaster (taxid:7227)]

 Score = 408 (148.7 bits), Expect = 4.9e-67, Sum P(4) = 4.9e-67
 Identities = 78/123 (63%), Positives = 96/123 (78%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDKRAC+AIHAVNLRNFL A CRT+REEQGDESE+FLSLF T + YIEGGRTA+GF+
Sbjct:   550 EATLDKRACAAIHAVNLRNFLGARCRTVREEQGDESEQFLSLFETEVIYIEGGRTATGFY 609

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             T+E+ ++ TRLY VHA       ++IHLEPV     SLDPR  F+LD G  ++IW G ++
Sbjct:   610 TIEEMIHITRLYLVHA-----YGATIHLEPVAPAITSLDPRHAFVLDLGTHIYIWMGERS 664

Query:   215 KNT 217
             KNT
Sbjct:   665 KNT 667

GO:0007629 "flight behavior" evidence=IMP

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0003779 "actin binding" evidence=ISS;NAS

GO:0005509 "calcium ion binding" evidence=ISS;NAS

GO:0030239 "myofibril assembly" evidence=IMP

GO:0007527 "adult somatic muscle development" evidence=IMP

UNIPROTKB|J3QLG3 FLII "Protein flightless-1 homolog" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 4.5e-58, Sum P(4) = 4.5e-58
 Identities = 80/120 (66%), Positives = 95/120 (79%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDK+ACSAIHAVNLRN+L AECRT+REE GDESEEFL +F+  ISYIEGG TASGF+
Sbjct:   541 EATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG-TASGFY 599

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct:   600 TVEDTHYVTRMYRVYGK------KNIKLEPVPLKGTSLDPRFVFLLDRGLDIYVWRGAQA 653

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q13045 FLII "Protein flightless-1 homolog" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 4.8e-58, Sum P(4) = 4.8e-58
 Identities = 80/120 (66%), Positives = 95/120 (79%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDK+ACSAIHAVNLRN+L AECRT+REE GDESEEFL +F+  ISYIEGG TASGF+
Sbjct:   552 EATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG-TASGFY 610

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct:   611 TVEDTHYVTRMYRVYGK------KNIKLEPVPLKGTSLDPRFVFLLDRGLDIYVWRGAQA 664

GO:0003779 "actin binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006936 "muscle contraction" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

UNIPROTKB|F1N365 FLII "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 406 (148.0 bits), Expect = 1.6e-57, Sum P(4) = 1.6e-57
 Identities = 80/120 (66%), Positives = 95/120 (79%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDK+ACSAIHAVNLRN+L AECRT+REE GDESEEFL +F+  ISYIEGG TASGF+
Sbjct:   552 EATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG-TASGFY 610

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct:   611 TVEDTHYVTRMYRVYGK------KNIKLEPVPLKGASLDPRFVFLLDRGLDIYVWRGAQA 664

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1PUU4 FLII "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 406 (148.0 bits), Expect = 2.0e-57, Sum P(4) = 2.0e-57
 Identities = 80/120 (66%), Positives = 95/120 (79%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDK+ACSAIHAVNLRN+L AECRT+REE GDESEEFL +F+  ISYIEGG TASGF+
Sbjct:   552 EATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG-TASGFY 610

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct:   611 TVEDTHYVTRMYRVYGK------KNIKLEPVPLKGASLDPRFVFLLDRGLDIYVWRGAQA 664

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|J9P2Y3 FLII "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 406 (148.0 bits), Expect = 2.1e-57, Sum P(4) = 2.1e-57
 Identities = 80/120 (66%), Positives = 95/120 (79%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDK+ACSAIHAVNLRN+L AECRT+REE GDESEEFL +F+  ISYIEGG TASGF+
Sbjct:   557 EATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG-TASGFY 615

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct:   616 TVEDTHYVTRMYRVYGK------KNIKLEPVPLKGASLDPRFVFLLDRGLDIYVWRGAQA 669

GO:0003779 "actin binding" evidence=IEA

MGI|MGI:1342286 Flii "flightless I homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 407 (148.3 bits), Expect = 4.1e-56, Sum P(3) = 4.1e-56
 Identities = 80/120 (66%), Positives = 95/120 (79%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDK+ACSAIHAVNLRN+L AECRT+REE GDESEEFL +F+  ISYIEGG TASGF+
Sbjct:   552 EATLDKKACSAIHAVNLRNYLGAECRTVREEMGDESEEFLQVFDNDISYIEGG-TASGFY 610

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct:   611 TVEDTHYVTRMYRVYGK------KNIKLEPVPLKGSSLDPRFVFLLDQGLDIYVWRGAQA 664

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0030054 "cell junction" evidence=IEA

GO:0051014 "actin filament severing" evidence=TAS

RGD|1307590 Flii "flightless I homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
 Identities = 79/120 (65%), Positives = 93/120 (77%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDK+ACSAIHAVNLRN+L AECRT REE GDESE FL +F+  ISYIEGG TASGF+
Sbjct:   552 EATLDKKACSAIHAVNLRNYLGAECRTAREEMGDESEGFLQVFDNDISYIEGG-TASGFY 610

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             TVEDT Y TR+YRV+         +I LEPVP+   SLDPRFVFLLD GL +++W G +A
Sbjct:   611 TVEDTHYVTRMYRVYGK------KNIKLEPVPLKGTSLDPRFVFLLDQGLDIYVWRGAQA 664

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0007275 "multicellular organismal development" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-071212-3 flii "flightless I homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 382 (139.5 bits), Expect = 3.0e-53, Sum P(3) = 3.0e-53
 Identities = 78/119 (65%), Positives = 93/119 (78%)

Query:    96 ATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT 155
             ATLDK+A +AIHAVNLRN+L AECRTIREE GDESEEF ++F+  ISYIEGG TASGF+T
Sbjct:   552 ATLDKKAGAAIHAVNLRNYLGAECRTIREEMGDESEEFTAVFDHEISYIEGG-TASGFYT 610

Query:   156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             VEDT Y TRLYRV+         +I LE VP+ + SLDPRFVFLLD GL++++W G  A
Sbjct:   611 VEDTQYPTRLYRVYGK------KNIRLESVPLKASSLDPRFVFLLDTGLEIYVWRGGNA 663

GO:0003779 "actin binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0045214 "sarcomere organization" evidence=IMP

UNIPROTKB|E1C6H2 FLII "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 402 (146.6 bits), Expect = 2.6e-51, Sum P(3) = 2.6e-51
 Identities = 82/120 (68%), Positives = 94/120 (78%)

Query:    95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             +ATLDK+ACSAIHAVNLRN+L AECR IREE GDES+EFL +F+  ISYIEGG TASGFF
Sbjct:   547 EATLDKKACSAIHAVNLRNYLGAECRCIREEMGDESDEFLQVFDNDISYIEGG-TASGFF 605

Query:   155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             TVEDT Y TRLYRV+         +I LEPV +   SLDPRFVFLLD GL+LF+W G +A
Sbjct:   606 TVEDTQYVTRLYRVYGK------KNIKLEPVALKGTSLDPRFVFLLDHGLELFVWRGSQA 659

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9JJ28	FLII_MOUSE	No assigned EC number	0.6666	0.4139	0.0889	yes	N/A
Q24020	FLII_DROME	No assigned EC number	0.6290	0.4358	0.0947	yes	N/A
P34268	FLII_CAEEL	No assigned EC number	0.5655	0.4285	0.0930	yes	N/A
Q13045	FLII_HUMAN	No assigned EC number	0.6666	0.4139	0.0890	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	273
cd11290	113	cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-l	2e-23
cd11280	88	cd11280, gelsolin_like, Tandemly repeated domains	4e-09
smart00262	90	smart00262, GEL, Gelsolin homology domain	5e-06
pfam00626	76	pfam00626, Gelsolin, Gelsolin repeat	4e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
cd11289	92	cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l	7e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-05
smart00262	90	smart00262, GEL, Gelsolin homology domain	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd11289	92	cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-l	3e-04
smart00262	90	smart00262, GEL, Gelsolin homology domain	0.001
cd11280	88	cd11280, gelsolin_like, Tandemly repeated domains	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
cd11292	98	cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-l	0.003
cd11288	92	cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-l	0.003

>gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found in gelsolin, severin, villin, and related proteins

 Score = 91.5 bits (228), Expect = 2e-23
 Identities = 27/54 (50%), Positives = 33/54 (61%)

Query: 94  TKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGG 147
            +A+ D+   +AI AV L ++L       RE QG ESEEFLS F  GI YIEGG
Sbjct: 60  KEASQDEAGAAAIKAVELDDYLGGRPVQHREVQGHESEEFLSYFKKGIIYIEGG 113

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin_like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 113

>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 6/49 (12%)

Query: 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
            RLYRV        + +I +E VP+ S SLD   VF+LD G +++IW G
Sbjct: 2   PRLYRVRG------SKAIEIEEVPLASSSLDSDDVFVLDTGSEIYIWQG 44

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 88

>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 180 IHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           + +  VP    SL+    ++LD G ++++W G K+
Sbjct: 11  VRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKS 45

Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains. Length = 90

>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 183 EPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            PVP+  ESL+    +LLD G  +F+W G  +
Sbjct: 6   PPVPLSQESLNSGDCYLLDTGFTIFLWVGKGS 37

Length = 76

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           ++L +  N+L  L   L+ L  L  L+L  NKI +  +P ++  L  L  LDLS+N+I +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD--LPPEIELLSALEELDLSNNSIIE 223

Query: 84  IPDALENAKR 93
           +  +L N K 
Sbjct: 224 LLSSLSNLKN 233

Length = 394

>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins

 Score = 40.3 bits (95), Expect = 7e-05
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            RL  V    +      +    V +   SL+   VF+LD G  ++ WNG K+
Sbjct: 2   PRLLHVKGRRN------VRAREVELSWSSLNSGDVFILDLGSTIYQWNGSKS 47

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 92

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
          L TL+L  N+I +  +P  L +L +L TLDLS N I  + 
Sbjct: 3  LETLDLSNNQITD--LP-PLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIRE-EQGDESEEFLSLF 137
           K++ D++  +A  AV L + L      +R  ++G E  EF SLF
Sbjct: 44  KSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLF 87

Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains. Length = 90

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIP 85
          L++L+L  N++    IP   F  L +L  LDLS NN+  I 
Sbjct: 2  LKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSIS 40

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 24 EHLSIVNNNLEKLFGELTE-LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
          + L + NN L  +     + L  L+ L+L  N +  S  P     L  L +LDLS NN+
Sbjct: 3  KSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found in gelsolin, severin, villin, and related proteins

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 241 VFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
           VF+LD G  ++ WNG K+    K+K   LA+ I
Sbjct: 30  VFILDLGSTIYQWNGSKSNRFEKAKAMQLAQGI 62

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 92

>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 207 FIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNT-FVFLLDAGLKLFIWNGPKAKNTFKSK 265
           F+      +N  V  +               N+   ++LD G ++++W G K+    K K
Sbjct: 1   FLVRVKGKRNVRVPEVPFSQGSL--------NSGDCYILDTGSEIYVWVGKKSSQDEKKK 52

Query: 266 TRLLAEKI 273
              LA ++
Sbjct: 53  AAELAVEL 60

Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains. Length = 90

>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLF 137
            ++  + A +A+ A  L      +   +R  QG E  EF SLF
Sbjct: 46  ASSQAELAAAALLAKELDEERKGKPEIVRIRQGQEPREFWSLF 88

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 88

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQC-LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L + NNN+  +   +  L+  L+ L+L  NKI++  +P  L +L +L  LDLS N++ 
Sbjct: 119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS 176

Query: 83  QIPDALENAK 92
            +P  L N  
Sbjct: 177 DLPKLLSNLS 186

Length = 394

>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found in gelsolin, severin, villin, and related proteins

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 162 TTRLYRVHAPLHQAQASSIHLEPV---PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNT 217
             +LY+V        +  + L  V    +  E LD    ++LD G ++F+W G  A   
Sbjct: 3   QKKLYKV-----SDASGKLKLTEVAEGSLNQEMLDSEDCYILDCGSEIFVWVGKGASLD 56

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 98

>gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found in gelsolin, severin, villin, and related proteins

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            TRL++V        + +     V   + SL+   VF+L     +++W G  +
Sbjct: 2   PTRLFQVRGNG----SGNTRAVEVDADASSLNSNDVFVLKTPSSVYLWVGKGS 50

Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins. Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	273
KOG0443|consensus	827		100.0
KOG0443|consensus	827		100.0
KOG0444|consensus	1255		100.0
KOG0445|consensus	919		99.6
KOG0444|consensus	1255		99.58
smart00262	90	GEL Gelsolin homology domain. Gelsolin/severin/vil	99.36
KOG0445|consensus	919		99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.21
PLN03150	623	hypothetical protein; Provisional	99.17
KOG0617|consensus	264		99.11
PF00626	76	Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel	98.95
KOG0617|consensus	264		98.85
smart00262	90	GEL Gelsolin homology domain. Gelsolin/severin/vil	98.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.75
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.74
PF00626	76	Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel	98.72
KOG4194|consensus	873		98.69
KOG0472|consensus	565		98.64
PLN03150	623	hypothetical protein; Provisional	98.58
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.56
KOG4237|consensus	498		98.55
KOG0472|consensus	565		98.53
KOG4194|consensus	873		98.49
KOG4579|consensus	177		98.26
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.26
KOG1259|consensus	490		98.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.22
KOG4237|consensus	498		98.16
KOG0532|consensus	722		98.11
KOG0618|consensus	1081		98.08
KOG0532|consensus	722		98.07
KOG0618|consensus	1081		98.03
KOG4579|consensus	177		97.97
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.97
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.93
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.63
KOG1259|consensus	490		97.55
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.54
KOG1859|consensus	1096		97.43
KOG0531|consensus	414		97.43
KOG1859|consensus	1096		97.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.36
KOG4658|consensus	889		97.3
KOG1644|consensus	233		97.16
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.1
KOG0531|consensus	414		97.03
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.99
KOG4658|consensus	889		96.99
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.97
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.89
KOG2739|consensus	260		96.84
smart00370	26	LRR Leucine-rich repeats, outliers.	96.78
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.78
KOG1644|consensus	233		96.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.15
smart00370	26	LRR Leucine-rich repeats, outliers.	96.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.09
KOG2739|consensus	260		96.03
PRK15386	426	type III secretion protein GogB; Provisional	96.01
KOG3207|consensus	505		95.96
KOG3207|consensus	505		95.34
KOG2982|consensus	418		95.18
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	95.04
KOG2982|consensus	418		95.03
PRK15386	426	type III secretion protein GogB; Provisional	94.95
KOG3665|consensus	699		94.78
KOG1984|consensus	1007		94.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.39
KOG0473|consensus	326		94.11
KOG0473|consensus	326		93.63
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	93.04
KOG2123|consensus	388		92.75
KOG1909|consensus	382		92.66
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	92.12
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	91.49
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	91.41
PTZ00395	1560	Sec24-related protein; Provisional	89.48
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.23
KOG1909|consensus	382		89.17
KOG3665|consensus	699		89.1
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.08
KOG1985|consensus	887		88.83
KOG1984|consensus	1007		88.69
PTZ00395	1560	Sec24-related protein; Provisional	87.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.83
KOG1985|consensus	887		86.04
KOG2123|consensus	388		85.64
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	83.74
KOG2120|consensus	419		81.4

>KOG0443|consensus

Probab=100.00  E-value=1.1e-37  Score=280.66  Aligned_cols=223  Identities=27%  Similarity=0.439  Sum_probs=187.3

Q ss_pred             cCCccCCEeeccCCcCccCCCCcccc-CC-C--CCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhhh
Q psy8923          41 TELQCLRTLNLRYNKIKNSGIPVDLF-HL-E--DLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLA  116 (273)
Q Consensus        41 ~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~--~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~  116 (273)
                      ++=+.|+...+.+=.+..  +|..-. .. +  .-..|.-..++-..+...|++|+|.+++.++.+++++.+++|++.||
T Consensus        16 g~~pGl~IWRIe~f~lv~--VP~s~~G~Fy~GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~aAiktveLD~~Lg   93 (827)
T KOG0443|consen   16 GQKPGLEIWRIENFELVP--VPKSSHGKFYTGDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGAAAIKTVELDDYLG   93 (827)
T ss_pred             ccCCceEEEEeccCeeee--cchhccCceecCceEEEEehhhccCCccceeEEEEecCccchhhhcceeeeeEehhhhhC
Confidence            344667777776666665  776432 11 1  22233333445557778899999999999999999999999999999


Q ss_pred             hhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCC
Q psy8923         117 AECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRF  196 (273)
Q Consensus       117 ~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~d  196 (273)
                      |.++|+|++||+|+..|++||+.++++.+|| ..+|++|++...+..|||||.|+      ++++++|||++|+|||.+|
T Consensus        94 g~~vQhREVQg~ES~~FLsYFK~gi~~~~GG-v~Sg~khv~~~~~~~rL~~~KGk------r~vr~~eV~~~~sS~N~gD  166 (827)
T KOG0443|consen   94 GRAVQHREVQGHESEKFLSYFKPGIIYQEGG-VASGFKHVETEEYQVRLFHCKGK------RNVRVKEVPFSWSSLNHGD  166 (827)
T ss_pred             CCcceeehhcccchHHHHhhccCCceecccc-cccCcccccccceeeEEEEEccc------eeEEEEEEEeehhhcCCCc
Confidence            9999999999999999999999999999999 99999999999988899999999      8999999999999999999


Q ss_pred             EEEEECCCeEEEEeCCCCCHHHHHHhhhhh---------------------------cccccc---C--C----------
Q psy8923         197 VFLLDAGLKLFIWNGPKAKNTFVFLLDAGL---------------------------KLFIWN---G--P----------  234 (273)
Q Consensus       197 vfild~~~~~~vW~G~~s~~~e~~~~~~~~---------------------------~~~fw~---~--~----------  234 (273)
                      |||||+++++|+|+|..|+..||.-|...+                           ..+||.   |  +          
T Consensus       167 vFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~vvdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~  246 (827)
T KOG0443|consen  167 VFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAVVDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDD  246 (827)
T ss_pred             EEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEEecCcccccCchHHHHHHhhcCcCccCCCCCcchh
Confidence            999999999999999999999998876543                           334554   1  0          


Q ss_pred             ----------------------------------CCCCceEEEEeCC-ceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923         235 ----------------------------------KAKNTFVFLLDAG-LKLFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       235 ----------------------------------~~~~~~v~~ld~~-~~~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                                                        -..++++||||+| .+||||+|+.|+.+||+.|+..|+.
T Consensus       247 ~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~g~~~IfVW~Gr~as~~ERkaAm~~Aee  319 (827)
T KOG0443|consen  247 DEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDCGGGEIFVWKGRQASLDERKAAMSSAEE  319 (827)
T ss_pred             hhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEecCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                              0123459999999 9999999999999999999998875

>KOG0443|consensus

Probab=100.00  E-value=4.2e-36  Score=270.55  Aligned_cols=182  Identities=22%  Similarity=0.345  Sum_probs=160.7

Q ss_pred             CccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecc-cCcc
Q psy8923          83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVE-DTVY  161 (273)
Q Consensus        83 ~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~-~~~~  161 (273)
                      .....||.|.|.+++.++...+...+..+...+++.++|.|+.+|+||++|+.+|++++++++|+ ++.   ... ....
T Consensus       440 ~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg-~s~---~g~~~~~~  515 (827)
T KOG0443|consen  440 RTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGG-TSE---EGNTYPAP  515 (827)
T ss_pred             ccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEEeecCCCChHHHHhhCCceEEEecC-cCC---CCCccCCC
Confidence            44456999999999999999888899999999999999999999999999999999999999998 442   111 1233


Q ss_pred             eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhh----------------
Q psy8923         162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAG----------------  225 (273)
Q Consensus       162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~----------------  225 (273)
                      .++||+|+|+    ++.++++.|||+.++||||+|||||.++..+|+|+|++|+.+||+||...                
T Consensus       516 ~t~LFqV~Gt----~~~n~kAveV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~~e~e~A~~v~~~l~~~~~~~v~EG~  591 (827)
T KOG0443|consen  516 STRLFQVQGT----GPSNTKAVEVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSGDEREMAKRVLDLLKRCQSTAVKEGS  591 (827)
T ss_pred             ceEEEEEecc----CcccceeEeeccccccccccceEEEecCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCChhhhhcCC
Confidence            4699999999    78999999999999999999999999999999999999999999998764                


Q ss_pred             hcccccc--C-----------------------------------------CCCCCceEEEEeCCceEEEEeCCCcchHh
Q psy8923         226 LKLFIWN--G-----------------------------------------PKAKNTFVFLLDAGLKLFIWNGPKAKNTF  262 (273)
Q Consensus       226 ~~~~fw~--~-----------------------------------------~~~~~~~v~~ld~~~~~~~w~G~~a~~~~  262 (273)
                      +++.||+  |                                         ++..++||||||||+|||||||+.|+++|
T Consensus       592 Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~~evfvWvG~~a~~~e  671 (827)
T KOG0443|consen  592 EPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTWSEVFVWVGQEANEKE  671 (827)
T ss_pred             CchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecCceEEEEecCCCChhH
Confidence            3899999  2                                         23345679999999999999999999999


Q ss_pred             HHhHHHHhhh
Q psy8923         263 KSKTRLLAEK  272 (273)
Q Consensus       263 ~~~~~~~~~~  272 (273)
                      |..|+++|++
T Consensus       672 K~~Al~~~~~  681 (827)
T KOG0443|consen  672 KEEALTIGQK  681 (827)
T ss_pred             HHHHHHHHHH
Confidence            9999999986

>KOG0444|consensus

Probab=100.00  E-value=2.7e-34  Score=254.38  Aligned_cols=173  Identities=50%  Similarity=0.824  Sum_probs=150.5

Q ss_pred             ccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeEEEEecCccc
Q psy8923          95 KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQ  174 (273)
Q Consensus        95 ~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L~~v~g~~~~  174 (273)
                      +++++.+.|+++++++|++.+|..+..+|+.+|.|+.+|+++|+..++|++||++.+||..++..++.+|||+|.+.   
T Consensus       554 eAtLDK~aCsAiHAVnLRN~LgA~CRTvREEmgDEsEeFL~lF~~ei~YIEGGrTasGFYT~E~~~h~TRlYrv~~~---  630 (1255)
T KOG0444|consen  554 EATLDKGACSAIHAVNLRNHLGATCRTVREEMGDESEEFLTLFGEEIVYIEGGRTASGFYTTEKPAHLTRLYRVGVN---  630 (1255)
T ss_pred             cccccchhhhHHHhhhhhhhhCchhhhhHHhhCccHHHHHHHhcceeEEEecCceecceeeecchHHhhhhheeccc---
Confidence            56777788999999999999999999999999999999999999999999999999999999999999999999987   


Q ss_pred             CCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHH----HHHHhhhh------------------hcccccc
Q psy8923         175 AQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNT----FVFLLDAG------------------LKLFIWN  232 (273)
Q Consensus       175 ~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~----e~~~~~~~------------------~~~~fw~  232 (273)
                        ...+.++.||++..||+++.||+||.|..+|+|.|-.|...    .|-+|..+                  ++.+||+
T Consensus       631 --g~~i~lEPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~EI~l~rQg~e~pEFWq  708 (1255)
T KOG0444|consen  631 --GTAIELEPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKSEIELCRQGREPPEFWQ  708 (1255)
T ss_pred             --cceeEeeccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCceeeehhhhcCCCHHHHH
Confidence              67899999999999999999999999999999999998554    34444432                  3889998


Q ss_pred             C--CCC--------------------------------------------------CCceEEEEeCCceEEEEeCCCcch
Q psy8923         233 G--PKA--------------------------------------------------KNTFVFLLDAGLKLFIWNGPKAKN  260 (273)
Q Consensus       233 ~--~~~--------------------------------------------------~~~~v~~ld~~~~~~~w~G~~a~~  260 (273)
                      +  ..+                                                  .+.-|||||+++.||+|+|+++++
T Consensus       709 aLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiLDc~sDiF~W~GkKs~R  788 (1255)
T KOG0444|consen  709 ALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYILDCNSDIFLWIGKKSNR  788 (1255)
T ss_pred             HhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEEecCCceEEEecccchH
Confidence            2  000                                                  012299999999999999999999


Q ss_pred             HhHHhHHHHhhh
Q psy8923         261 TFKSKTRLLAEK  272 (273)
Q Consensus       261 ~~~~~~~~~~~~  272 (273)
                      --|..|..+..+
T Consensus       789 LvraAa~KL~~E  800 (1255)
T KOG0444|consen  789 LVRAAAQKLVVE  800 (1255)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887654

>KOG0445|consensus

Probab=99.60  E-value=1.7e-15  Score=135.11  Aligned_cols=166  Identities=24%  Similarity=0.304  Sum_probs=131.9

Q ss_pred             chhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeE
Q psy8923          86 DALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRL  165 (273)
Q Consensus        86 ~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L  165 (273)
                      ...+.|+|.+++..+++.+++.+.+|+..-|   .|+|+.||+||+.|+.+|.+++.++.|- .         .....|+
T Consensus       581 cvyf~WqG~hst~~ekG~~AL~tvElD~e~g---aqvrv~qG~Ep~~Fl~lF~g~m~vhsgr-~---------E~~~erl  647 (919)
T KOG0445|consen  581 CVYFFWQGRHSTVSEKGTSALMTVELDEERG---AQVRVLQGKEPPCFLQLFQGGMVVHSGR-R---------EEEEERL  647 (919)
T ss_pred             EEEEEEccccCCcccccceeeeeeeeccccC---ceeEeecCCCccHHHHHhcCCeeEEcCc-h---------hhchhhe
Confidence            3467899999999999999999999987643   5899999999999999999999988876 2         1223479


Q ss_pred             EEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCe--EEEEeCCCCCHHHHHHhhhhh-----------------
Q psy8923         166 YRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLK--LFIWNGPKAKNTFVFLLDAGL-----------------  226 (273)
Q Consensus       166 ~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~--~~vW~G~~s~~~e~~~~~~~~-----------------  226 (273)
                      |.|.|.    -+....+.||.+..++|.|+..||+-..+.  +|+|.|..+-...+..+...+                 
T Consensus       648 Y~v~G~----vs~Et~l~Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~~~~~~~  723 (919)
T KOG0445|consen  648 YCVRGE----VSVETNLLEVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSSSKVTIH  723 (919)
T ss_pred             eeEecc----cccchhhhHhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCccccceeE
Confidence            999998    366778889999999999999999987654  999999999887666543322                 


Q ss_pred             -------cccccc--CCC-C-----------------------CCc-------eEEEEeCCceEEEEeCCCcchHhHHhH
Q psy8923         227 -------KLFIWN--GPK-A-----------------------KNT-------FVFLLDAGLKLFIWNGPKAKNTFKSKT  266 (273)
Q Consensus       227 -------~~~fw~--~~~-~-----------------------~~~-------~v~~ld~~~~~~~w~G~~a~~~~~~~~  266 (273)
                             +..||+  |.. .                       ...       ..|++|.|+|+|+|.    =+-+|+.|
T Consensus       724 Eveegs~~~~~~~alGrkdf~~~~RlF~~sS~qa~els~p~rc~~pFsQ~~Ly~afLvD~gdelwLW~----w~s~r~~A  799 (919)
T KOG0445|consen  724 EVEEGSEPLGFWDALGRKDFNFAPRLFILSSSQATELSYPARCPMPFSQEDLYSAFLVDNGDELWLWQ----WASDRKSA  799 (919)
T ss_pred             eecCCCCchhhhhhcccccccccceeeeccchhhhhccCcccCCCcccHHHHhhheeeccCCeeEeeh----hhhHHHHH
Confidence                   666676  210 0                       000       179999999999998    56678888


Q ss_pred             HHHhhh
Q psy8923         267 RLLAEK  272 (273)
Q Consensus       267 ~~~~~~  272 (273)
                      ++.|.+
T Consensus       800 leta~~  805 (919)
T KOG0445|consen  800 LETALQ  805 (919)
T ss_pred             HHHHHH
Confidence            888875

>KOG0444|consensus

Probab=99.58  E-value=1.4e-15  Score=136.26  Aligned_cols=184  Identities=15%  Similarity=0.184  Sum_probs=136.2

Q ss_pred             CCCC-Cccchhhhhhhcccccchhccccc--cccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCccccccee
Q psy8923          79 NNIK-QIPDALENAKRTKATLDKRACSAI--HAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT  155 (273)
Q Consensus        79 N~l~-~ip~~l~~w~g~~~~~~~~~~~~l--~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~  155 (273)
                      |+-. .+....|.|+|++++--- -..+-  .-......++++...+|..|..|...|++.|+.+++++.|.+..    +
T Consensus       959 ~qPE~dfqCvVYFWQGR~AsNMG-WLtFTF~LQkkFe~~F~~kLEVVRm~QQQEN~KFlSHFKRKFiIhrGkRk~----~ 1033 (1255)
T KOG0444|consen  959 DQPEMDFQCVVYFWQGRDASNMG-WLTFTFQLQKKFEEIFKDKLEVVRMYQQQENHKFLSHFKRKFIIHRGKRKL----T 1033 (1255)
T ss_pred             cCCccceeEEEEEecCCccCccc-eEEEEEEehhhHHHhcccceeeeeHhhhhhhhHHHHHhhhhheeeccccch----h
Confidence            4545 777889999998765221 11111  12223445788888999999999999999999999999987221    1


Q ss_pred             cccCcceeeEEEEecCcccCC-CCceEEEEecCCCCCCCCCCEEEEEC-------CCeEEEEeCCCCCHHHHHHhhhhh-
Q psy8923         156 VEDTVYTTRLYRVHAPLHQAQ-ASSIHLEPVPVLSESLDPRFVFLLDA-------GLKLFIWNGPKAKNTFVFLLDAGL-  226 (273)
Q Consensus       156 ~~~~~~~~~L~~v~g~~~~~~-~~~~~~~ev~~~~ssL~s~dvfild~-------~~~~~vW~G~~s~~~e~~~~~~~~-  226 (273)
                      .......+.+|+++..    | .-.++..|+.++++.|||..||||..       +..+|+|.|+.|+++|.+++.+.. 
T Consensus      1034 ~~~G~~~pelfq~R~N----GsalctR~IQin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp~e~~~a~d~~~ 1109 (1255)
T KOG0444|consen 1034 KNLGGKWPELFQMRAN----GSALCTRTIQINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDPREHEFASDLVV 1109 (1255)
T ss_pred             hhhcCCCchheeeecC----CccceeeeEEecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCChHHHHHHHHhcC
Confidence            1122335689999876    3 45678899999999999999999953       345899999999999999987532 


Q ss_pred             -----------------ccccccC----------------------------------------CCCCCceEEEEeCCce
Q psy8923         227 -----------------KLFIWNG----------------------------------------PKAKNTFVFLLDAGLK  249 (273)
Q Consensus       227 -----------------~~~fw~~----------------------------------------~~~~~~~v~~ld~~~~  249 (273)
                                       +..||.+                                        ++...+++|++|.|.+
T Consensus      1110 ~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~~~~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldng~~ 1189 (1255)
T KOG0444|consen 1110 RDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDSSFVKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDNGDA 1189 (1255)
T ss_pred             ccccchhhhhccCCccchHHHhcccCCCCccchhHHHHHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcccce
Confidence                             4446762                                        1223356999999999


Q ss_pred             EEEEeCCCcchHhHHhHHHHhh
Q psy8923         250 LFIWNGPKAKNTFKSKTRLLAE  271 (273)
Q Consensus       250 ~~~w~G~~a~~~~~~~~~~~~~  271 (273)
                      ||+|+|...+.-|-+.+...|+
T Consensus      1190 v~~w~g~~~s~ie~Kls~~a~Q 1211 (1255)
T KOG0444|consen 1190 VFLWIGARSSDIEAKLSYQAAQ 1211 (1255)
T ss_pred             eeeeecceehhHHHHHHHHHHH
Confidence            9999999999988888877554

>smart00262 GEL Gelsolin homology domain

Probab=99.36  E-value=3.7e-12  Score=89.47  Aligned_cols=79  Identities=20%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             EEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceEEEE
Q psy8923         165 LYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLL  244 (273)
Q Consensus       165 L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v~~l  244 (273)
                      +.++.|.      ..+.+.++|+++++|+++||||||++..+|+|.|++|+..||..|...|...+-. .......|.++
T Consensus         2 ~~~~~g~------~~~~~~~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~-~~~~~~~i~~v   74 (90)
T smart00262        2 LVRVKGK------RNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDT-LGPGPVQVRVV   74 (90)
T ss_pred             eEEEeCC------ceEEEEEcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHh-cCCCCceEEEE
Confidence            3455555      6888999999999999999999999999999999999999999999887666532 22445678888


Q ss_pred             eCCceE
Q psy8923         245 DAGLKL  250 (273)
Q Consensus       245 d~~~~~  250 (273)
                      +.|.|-
T Consensus        75 ~eg~E~   80 (90)
T smart00262       75 DEGKEP   80 (90)
T ss_pred             eCCCCC
Confidence            888764

Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.

>KOG0445|consensus

Probab=99.27  E-value=5.5e-12  Score=113.08  Aligned_cols=105  Identities=22%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh----------------
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL----------------  226 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~----------------  226 (273)
                      .-|++|+|+      .++...-|.+..+|||++||||+..+..+|.|.|..|+.-|+.-|...+                
T Consensus       224 vMLlqVkGr------~hVqtRLVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCtAt~i  297 (919)
T KOG0445|consen  224 VMLLQVKGR------RHVQTRLVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCTATYI  297 (919)
T ss_pred             eEEEEEccc------ccceeEEechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCceeEEE
Confidence            368999998      7888888999999999999999999999999999999999988766432                


Q ss_pred             ------------cccccc--C---CC-----CC---------------------------------------CceEEEEe
Q psy8923         227 ------------KLFIWN--G---PK-----AK---------------------------------------NTFVFLLD  245 (273)
Q Consensus       227 ------------~~~fw~--~---~~-----~~---------------------------------------~~~v~~ld  245 (273)
                                  ...||.  |   +|     +.                                       ...|.|+|
T Consensus       298 vtit~~~~~t~~~~~Fw~llg~qs~~~~~g~a~ede~fE~~iietN~iyr~~dd~l~p~~~~w~ipk~~~l~p~eVLvFD  377 (919)
T KOG0445|consen  298 VTITEINTHTHAAKDFWKLLGGQSSYQSAGDAKEDELFEAAIIETNCIYRLMDDKLVPDDDYWKIPKCSLLQPKEVLVFD  377 (919)
T ss_pred             EEEeccchhHHHHHHHHHHhCCccchhhcCCccccchHHHHHHHhhhHHhhcccccCccccccccccccccCcceEEEEe
Confidence                        556776  2   00     00                                       01299999


Q ss_pred             CCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         246 AGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       246 ~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                      -|+|||||-|+.++...|+-|.++|+.+
T Consensus       378 FGSEvYVW~Gk~~~~~~~~~A~~lAk~l  405 (919)
T KOG0445|consen  378 FGSEVYVWHGKEVTLAQRKIAFQLAKHL  405 (919)
T ss_pred             cCceEEEEcCccCchHHHHHHHHHHHHH
Confidence            9999999999999999999999999864

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.21  E-value=7.3e-12  Score=81.26  Aligned_cols=59  Identities=36%  Similarity=0.514  Sum_probs=53.3

Q ss_pred             CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCC
Q psy8923          21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNI   81 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l   81 (273)
                      ++|++|++++|+|+.|| ..|..+++|++|++++|+++.  +|+ .+.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~--i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS--IPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE--EETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc--cCHHHHcCCCCCCEEeCcCCcC
Confidence            35788999999999998 789999999999999999998  665 556999999999999986

...

>PLN03150 hypothetical protein; Provisional

Probab=99.17  E-value=4.5e-11  Score=112.29  Aligned_cols=82  Identities=26%  Similarity=0.470  Sum_probs=72.9

Q ss_pred             CCCCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccC
Q psy8923           1 MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN   79 (273)
Q Consensus         1 ~~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N   79 (273)
                      +.|.+|..|+.+++|        +.|+|++|.|++ +|..++.|++|+.|+|++|++++ .+|+.+.+|++|+.|+|++|
T Consensus       430 L~g~ip~~i~~L~~L--------~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        430 LRGFIPNDISKLRHL--------QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             ccccCCHHHhCCCCC--------CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEECcCC
Confidence            357788888887777        669999999996 89999999999999999999995 89999999999999999999


Q ss_pred             CCC-Cccchhhhh
Q psy8923          80 NIK-QIPDALENA   91 (273)
Q Consensus        80 ~l~-~ip~~l~~w   91 (273)
                      +|+ .+|..+...
T Consensus       501 ~l~g~iP~~l~~~  513 (623)
T PLN03150        501 SLSGRVPAALGGR  513 (623)
T ss_pred             cccccCChHHhhc
Confidence            999 999887653

>KOG0617|consensus

Probab=99.11  E-value=1.3e-11  Score=94.60  Aligned_cols=78  Identities=27%  Similarity=0.405  Sum_probs=63.1

Q ss_pred             CCccccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC--
Q psy8923           5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK--   82 (273)
Q Consensus         5 ~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~--   82 (273)
                      +|+.|.++.+|        +.|++++|+|+.+|.++..|++|+.|++.-|++..  +|..|+.++.|+.|||++|+|.  
T Consensus        48 vppnia~l~nl--------evln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynnl~e~  117 (264)
T KOG0617|consen   48 VPPNIAELKNL--------EVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNNLNEN  117 (264)
T ss_pred             cCCcHHHhhhh--------hhhhcccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhccccccccc
Confidence            34445555444        56888999999999888899999999999999987  8999999999999999999888  


Q ss_pred             Cccchhhhhh
Q psy8923          83 QIPDALENAK   92 (273)
Q Consensus        83 ~ip~~l~~w~   92 (273)
                      .+|..+|.+.
T Consensus       118 ~lpgnff~m~  127 (264)
T KOG0617|consen  118 SLPGNFFYMT  127 (264)
T ss_pred             cCCcchhHHH
Confidence            7888777643

>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []

Probab=98.95  E-value=6.2e-10  Score=75.47  Aligned_cols=69  Identities=20%  Similarity=0.354  Sum_probs=51.9

Q ss_pred             ceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceEEEEeCCc
Q psy8923         179 SIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL  248 (273)
Q Consensus       179 ~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v~~ld~~~  248 (273)
                      ++...++++++++|+++||||+|++..+|+|.|+.|+..|+.++...|.... ...+.....+..++.|.
T Consensus         2 ~~~~~~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~-~~~~~~~~~~~~~~eg~   70 (76)
T PF00626_consen    2 FVRPEQVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL-SEERPPLPEVIRVEEGK   70 (76)
T ss_dssp             TEEEEEESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH-HHHTTTTSEEEEEETTH
T ss_pred             CccCCcCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh-hhcCCCCCEEEEecCCC
Confidence            4577889999999999999999999999999999999999999877664333 21222223444445544

It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....

>KOG0617|consensus

Probab=98.85  E-value=2.7e-10  Score=87.37  Aligned_cols=88  Identities=25%  Similarity=0.358  Sum_probs=67.7

Q ss_pred             CCCCccccCCCCCceecC---------------CCccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccc
Q psy8923           3 GFEPGTFCMASKSESVTI---------------GLTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDL   65 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l---------------~~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~   65 (273)
                      ..+|.+|+++++|+.+.+               +.|++|||+.|++..  +|..|..|+.|+.|+|+.|.+.-  +|..+
T Consensus        69 e~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~--lp~dv  146 (264)
T KOG0617|consen   69 EELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI--LPPDV  146 (264)
T ss_pred             hhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc--CChhh
Confidence            467888888888877542               366778888887775  77777778888888888888876  88888


Q ss_pred             cCCCCCCEEecccCCCCCccchhhhhh
Q psy8923          66 FHLEDLTTLDLSHNNIKQIPDALENAK   92 (273)
Q Consensus        66 ~~l~~L~~L~Ls~N~l~~ip~~l~~w~   92 (273)
                      +++++|+.|.+..|.|-++|.+++.+.
T Consensus       147 g~lt~lqil~lrdndll~lpkeig~lt  173 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLLSLPKEIGDLT  173 (264)
T ss_pred             hhhcceeEEeeccCchhhCcHHHHHHH
Confidence            888888888888888888888777653

>smart00262 GEL Gelsolin homology domain

Probab=98.85  E-value=3.8e-09  Score=74.09  Aligned_cols=38  Identities=26%  Similarity=0.529  Sum_probs=34.7

Q ss_pred             CCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         236 AKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       236 ~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                      ..+++|||||++.+||||+|++|++.||..|..+|+++
T Consensus        23 L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~   60 (90)
T smart00262       23 LNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVEL   60 (90)
T ss_pred             CCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence            46679999999999999999999999999999998753

Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.77  E-value=7.8e-09  Score=61.94  Aligned_cols=37  Identities=41%  Similarity=0.494  Sum_probs=22.0

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCcc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN   58 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~   58 (273)
                      +|++|++++|+|+.||+.+++|++|+.|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            3455666666666666666666666666666666665

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.77  E-value=9.8e-09  Score=101.81  Aligned_cols=88  Identities=30%  Similarity=0.426  Sum_probs=55.2

Q ss_pred             CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923           2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVD   64 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~   64 (273)
                      .|.+|..|+.+++|+.+.+                ++|++|+|++|.+++ +|..++++++|+.|+|++|++++ .+|..
T Consensus       153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~  231 (968)
T PLN00113        153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYE  231 (968)
T ss_pred             cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-cCChh
Confidence            3566777777776665432                255666666666665 46666666666666666666663 56666


Q ss_pred             ccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923          65 LFHLEDLTTLDLSHNNIK-QIPDALEN   90 (273)
Q Consensus        65 ~~~l~~L~~L~Ls~N~l~-~ip~~l~~   90 (273)
                      +.++++|++|+|++|+++ .+|..+..
T Consensus       232 l~~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        232 IGGLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             HhcCCCCCEEECcCceeccccChhHhC
Confidence            666666666666666666 55554443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.75  E-value=9.7e-09  Score=101.84  Aligned_cols=79  Identities=30%  Similarity=0.451  Sum_probs=45.0

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCC
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI   81 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l   81 (273)
                      |.+|..|.+++.|        +.|+|++|++++ +|..+..+++|+.|+|++|.+++ .+|..+.++++|+.|+|++|++
T Consensus       489 ~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l  559 (968)
T PLN00113        489 GAVPRKLGSLSEL--------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQL  559 (968)
T ss_pred             CccChhhhhhhcc--------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccc-cCChhHhCcccCCEEECCCCcc
Confidence            4445555544444        446666666654 45556666666666666666663 5555555666666666666666


Q ss_pred             C-Cccchhhh
Q psy8923          82 K-QIPDALEN   90 (273)
Q Consensus        82 ~-~ip~~l~~   90 (273)
                      + .+|..+..
T Consensus       560 ~~~~p~~l~~  569 (968)
T PLN00113        560 SGEIPKNLGN  569 (968)
T ss_pred             cccCChhHhc
Confidence            5 55554443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.74  E-value=9.3e-09  Score=61.60  Aligned_cols=41  Identities=39%  Similarity=0.612  Sum_probs=36.3

Q ss_pred             ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          44 QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        44 ~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|++++|+|+.  +|+.+.+|++|+.|++++|+++++|.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence            579999999999998  99889999999999999999998865

...

>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []

Probab=98.72  E-value=9.6e-09  Score=69.55  Aligned_cols=37  Identities=27%  Similarity=0.577  Sum_probs=33.9

Q ss_pred             CCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         237 KNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       237 ~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                      .+++|||||++.+||+|+|++|+..||..|..+|+++
T Consensus        16 ~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~   52 (76)
T PF00626_consen   16 NSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQEL   52 (76)
T ss_dssp             ETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999998763

It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....

>KOG4194|consensus

Probab=98.69  E-value=1.3e-08  Score=91.59  Aligned_cols=63  Identities=30%  Similarity=0.450  Sum_probs=35.5

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +++.|+|.+|.|+.+. .++.-++.|+.||||.|.|+.  ||..-+ .=.++++|+|+.|+++.+..
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~--i~~~sfp~~~ni~~L~La~N~It~l~~  190 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE--IPKPSFPAKVNIKKLNLASNRITTLET  190 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc--ccCCCCCCCCCceEEeecccccccccc
Confidence            4555666666666654 556666666666666666665  554433 22455555555555555443

>KOG0472|consensus

Probab=98.64  E-value=2.3e-09  Score=92.29  Aligned_cols=79  Identities=27%  Similarity=0.375  Sum_probs=48.3

Q ss_pred             CCCCCccccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCC
Q psy8923           2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN   80 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~   80 (273)
                      -|.+|+.++.+..|..        |+|.+|.|..+| +|++++.|..|++..|+|+-  +|..+. ++.+|..|||..|+
T Consensus       195 L~tlP~~lg~l~~L~~--------LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdNk  263 (565)
T KOG0472|consen  195 LETLPPELGGLESLEL--------LYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDNK  263 (565)
T ss_pred             hhcCChhhcchhhhHH--------HHhhhcccccCC-CCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeeccccc
Confidence            4678899998888865        666666666655 55555555555555555554  555554 55555555555555


Q ss_pred             CCCccchhhhh
Q psy8923          81 IKQIPDALENA   91 (273)
Q Consensus        81 l~~ip~~l~~w   91 (273)
                      ++++|.++..+
T Consensus       264 lke~Pde~clL  274 (565)
T KOG0472|consen  264 LKEVPDEICLL  274 (565)
T ss_pred             cccCchHHHHh
Confidence            55555555443

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=6.6e-08  Score=91.12  Aligned_cols=67  Identities=31%  Similarity=0.521  Sum_probs=62.2

Q ss_pred             ccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923          23 TEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN   90 (273)
Q Consensus        23 l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~   90 (273)
                      ++.|+|++|.+++ +|.+++.|++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|+ .+|..+..
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~  488 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ  488 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence            5789999999997 78999999999999999999995 89999999999999999999999 89987765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.56  E-value=3.9e-08  Score=77.24  Aligned_cols=63  Identities=38%  Similarity=0.506  Sum_probs=22.3

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .+|+.|+|++|.|+.|+. +..|+.|+.|++++|+|+.  +++.+. .+++|+.|+|++|+++.+..
T Consensus        42 ~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~  105 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNE  105 (175)
T ss_dssp             TT--EEE-TTS--S--TT-----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCC
T ss_pred             cCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHH
Confidence            355666777776666642 4456666677777777766  655443 46667777777776665543

>KOG4237|consensus

Probab=98.55  E-value=1.7e-08  Score=86.73  Aligned_cols=85  Identities=22%  Similarity=0.269  Sum_probs=70.0

Q ss_pred             ccCCCCCceecC---CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEE-ecccCCCCC
Q psy8923           9 FCMASKSESVTI---GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL-DLSHNNIKQ   83 (273)
Q Consensus         9 ~~~~~~l~~~~l---~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L-~Ls~N~l~~   83 (273)
                      .|..++|+.+|-   .+.+.++|..|.|+.|| .+|+.+++|+.||||+|+|+. .-|.+|.++.+|..| ++++|+|++
T Consensus        52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~  130 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITD  130 (498)
T ss_pred             EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhh
Confidence            466777888774   37888999999999998 899999999999999999998 557777799887655 456699999


Q ss_pred             ccchhhhhhhc
Q psy8923          84 IPDALENAKRT   94 (273)
Q Consensus        84 ip~~l~~w~g~   94 (273)
                      ||...+.-++.
T Consensus       131 l~k~~F~gL~s  141 (498)
T KOG4237|consen  131 LPKGAFGGLSS  141 (498)
T ss_pred             hhhhHhhhHHH
Confidence            99987765443

>KOG0472|consensus

Probab=98.53  E-value=1.6e-08  Score=87.11  Aligned_cols=77  Identities=39%  Similarity=0.553  Sum_probs=62.3

Q ss_pred             CCCccccCCCCCceecCCCccEEEccCCCCCCchhh-hcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923           4 FEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~-~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      ++| +|+.++.|+.        |.++.|+|..+|.+ ..+|++|..|||..|++++  +|+.++-+.+|..||||+|-++
T Consensus       220 ~lP-ef~gcs~L~E--------lh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke--~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  220 FLP-EFPGCSLLKE--------LHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE--VPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             cCC-CCCccHHHHH--------HHhcccHHHhhHHHHhcccccceeeecccccccc--CchHHHHhhhhhhhcccCCccc
Confidence            567 8888888866        78888888888855 4488888888888888887  8888888888888888888888


Q ss_pred             Cccchhhhh
Q psy8923          83 QIPDALENA   91 (273)
Q Consensus        83 ~ip~~l~~w   91 (273)
                      .+|..++.+
T Consensus       289 ~Lp~sLgnl  297 (565)
T KOG0472|consen  289 SLPYSLGNL  297 (565)
T ss_pred             cCCcccccc
Confidence            888877764

>KOG4194|consensus

Probab=98.49  E-value=7.2e-08  Score=86.84  Aligned_cols=133  Identities=23%  Similarity=0.248  Sum_probs=92.3

Q ss_pred             CCCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc
Q psy8923           4 FEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF   66 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~   66 (273)
                      .||.......+++.+.+                +.|+.||||.|.|+.|| ++|..=.++++|+|++|+|+.  +....+
T Consensus       116 ~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~--l~~~~F  193 (873)
T KOG4194|consen  116 RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT--LETGHF  193 (873)
T ss_pred             hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc--cccccc
Confidence            35555555555665543                27888999999999998 888888889999999999988  766555


Q ss_pred             -CCCCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchh-hhhhhhhhhcccccCCCchhhHhhccCCcEEe
Q psy8923          67 -HLEDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLFNTGISYI  144 (273)
Q Consensus        67 -~l~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~-~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l  144 (273)
                       ++.+|..|.|+.|+++.+|...|.-           ...+..++|. +.+  +-+..-.+||.++.+-+++-.+++.-+
T Consensus       194 ~~lnsL~tlkLsrNrittLp~r~Fk~-----------L~~L~~LdLnrN~i--rive~ltFqgL~Sl~nlklqrN~I~kL  260 (873)
T KOG4194|consen  194 DSLNSLLTLKLSRNRITTLPQRSFKR-----------LPKLESLDLNRNRI--RIVEGLTFQGLPSLQNLKLQRNDISKL  260 (873)
T ss_pred             cccchheeeecccCcccccCHHHhhh-----------cchhhhhhccccce--eeehhhhhcCchhhhhhhhhhcCcccc
Confidence             7889999999999999999877752           2333333332 111  011222567788888888888887777


Q ss_pred             cCCccccc
Q psy8923         145 EGGRTASG  152 (273)
Q Consensus       145 ~g~~~~s~  152 (273)
                      +.| .+-+
T Consensus       261 ~DG-~Fy~  267 (873)
T KOG4194|consen  261 DDG-AFYG  267 (873)
T ss_pred             cCc-ceee
Confidence            766 4433

>KOG4579|consensus

Probab=98.26  E-value=8.5e-08  Score=71.09  Aligned_cols=70  Identities=24%  Similarity=0.370  Sum_probs=62.2

Q ss_pred             CccEEEccCCCCCCchhhhcCC-ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhhhh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTEL-QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKR   93 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l-~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w~g   93 (273)
                      .|+..+|++|.+...|+.|... +.++.|+|++|.|+.  +|..+..++.|+.|+++.|.|...|..+..++.
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~  124 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK  124 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence            4677899999999999887765 589999999999998  999988999999999999999999998887543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.26  E-value=4.7e-07  Score=58.43  Aligned_cols=45  Identities=44%  Similarity=0.661  Sum_probs=39.7

Q ss_pred             ccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923          44 QCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        44 ~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      ++|+.|++++|+|+.  +|...+ ++++|++|++++|+++.+|...+.
T Consensus         1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~   46 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFS   46 (61)
T ss_dssp             TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTT
T ss_pred             CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHc
Confidence            579999999999998  887555 899999999999999999886654

...

>KOG1259|consensus

Probab=98.25  E-value=2.2e-07  Score=77.59  Aligned_cols=64  Identities=25%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +..|+.||||+|.|+.|..+..-++.++.|++|+|.|..  +-. +..+++|+.||||+|.|+++-.
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~N~Ls~~~G  346 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSGNLLAECVG  346 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeecccchhHhhhh
Confidence            458899999999999999999999999999999999997  654 7889999999999999987743

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.22  E-value=7.6e-07  Score=69.99  Aligned_cols=64  Identities=33%  Similarity=0.461  Sum_probs=21.7

Q ss_pred             CccEEEccCCCCCCchhhhc-CCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLFGELT-ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~-~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      .++.|+|++|.|+.|.. ++ .+.+|+.|+|++|.|+.  ++ .+..+++|+.|+|++|+++++++.+.
T Consensus        20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~~i~~~l~   84 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRISSISEGLD   84 (175)
T ss_dssp             ----------------S---TT-TT--EEE-TTS--S----T-T----TT--EEE--SS---S-CHHHH
T ss_pred             ccccccccccccccccc-hhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCCccccchH
Confidence            45789999999999853 44 68999999999999998  76 67889999999999999999976543

>KOG4237|consensus

Probab=98.16  E-value=5.2e-07  Score=77.79  Aligned_cols=86  Identities=22%  Similarity=0.264  Sum_probs=67.3

Q ss_pred             CCCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhhhhhcccc
Q psy8923          20 IGLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALENAKRTKAT   97 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~   97 (273)
                      +++|+.|+|++|+|+.| +..|.++.+++.|+|..|+|..  +...++ ++.+|+.|+|.+|+|+.+.+..|.-.-...+
T Consensus       273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~--v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~  350 (498)
T KOG4237|consen  273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF--VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST  350 (498)
T ss_pred             cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH--HHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence            34668899999999999 4999999999999999999998  777766 9999999999999999887766654333333


Q ss_pred             cchhcccccc
Q psy8923          98 LDKRACSAIH  107 (273)
Q Consensus        98 ~~~~~~~~l~  107 (273)
                      +..-.++..+
T Consensus       351 l~l~~Np~~C  360 (498)
T KOG4237|consen  351 LNLLSNPFNC  360 (498)
T ss_pred             eehccCcccC
Confidence            3333333333

>KOG0532|consensus

Probab=98.11  E-value=3e-07  Score=82.63  Aligned_cols=64  Identities=34%  Similarity=0.578  Sum_probs=31.2

Q ss_pred             cEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        24 ~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      ..||.+.|.|..+|+.++.|.+|+.|.+.+|++..  +|+.+..| .|..||+|.|+++.||-.+..
T Consensus       169 ~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfScNkis~iPv~fr~  232 (722)
T KOG0532|consen  169 AHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFSCNKISYLPVDFRK  232 (722)
T ss_pred             HHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecccCceeecchhhhh
Confidence            33455555555555555555555555555555544  44444422 344455555555555544443

>KOG0618|consensus

Probab=98.08  E-value=7e-07  Score=84.32  Aligned_cols=68  Identities=26%  Similarity=0.455  Sum_probs=61.5

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENA   91 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w   91 (273)
                      .|+.|+++.|-|..+|.+++++.+|++|+|.+|++..  +|..+..+.+|+.|++|+|++..+|..+...
T Consensus        69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~--lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~l  136 (1081)
T KOG0618|consen   69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQS--LPASISELKNLQYLDLSFNHFGPIPLVIEVL  136 (1081)
T ss_pred             HHhhcccchhhHhhCchhhhhhhcchhheeccchhhc--CchhHHhhhcccccccchhccCCCchhHHhh
Confidence            3466999999999999999999999999999999998  9999999999999999999999999877654

>KOG0532|consensus

Probab=98.07  E-value=2.5e-07  Score=83.15  Aligned_cols=85  Identities=25%  Similarity=0.384  Sum_probs=50.3

Q ss_pred             CCCccccCCCCCceecCC--------------CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCC
Q psy8923           4 FEPGTFCMASKSESVTIG--------------LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLE   69 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l~--------------~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~   69 (273)
                      .||..++++..|.-+.+.              -|+.|.+++|+++.+|..++.+..|..||.+.|.+..  +|..+++++
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~  189 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLT  189 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhh--chHHhhhHH
Confidence            467777777666433221              3455566666666666555655666666666666665  666666666


Q ss_pred             CCCEEecccCCCCCccchhhh
Q psy8923          70 DLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        70 ~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +|+.|.++.|++..+|+++..
T Consensus       190 slr~l~vrRn~l~~lp~El~~  210 (722)
T KOG0532|consen  190 SLRDLNVRRNHLEDLPEELCS  210 (722)
T ss_pred             HHHHHHHhhhhhhhCCHHHhC
Confidence            666666666666666655553

>KOG0618|consensus

Probab=98.03  E-value=8.1e-07  Score=83.92  Aligned_cols=62  Identities=29%  Similarity=0.391  Sum_probs=42.9

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +|+.|+|++|+|..+| ..+.++..|+.|+||+|+|+.  +|..+.++..|+.|....|+|...|
T Consensus       384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP  446 (1081)
T KOG0618|consen  384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP  446 (1081)
T ss_pred             ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech
Confidence            5566777777777777 556777777777777777776  7766666666666666666666666

>KOG4579|consensus

Probab=97.97  E-value=6.1e-07  Score=66.61  Aligned_cols=66  Identities=30%  Similarity=0.406  Sum_probs=61.6

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      -++.|+|++|.|+.+|.++..++.|+.|+++.|.|..  .|.-+..|.+|..|+...|.+.+||..++
T Consensus        78 t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Lds~~na~~eid~dl~  143 (177)
T KOG4579|consen   78 TATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLDSPENARAEIDVDLF  143 (177)
T ss_pred             hhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence            5678999999999999889999999999999999998  99999999999999999999999997654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.97  E-value=1.1e-05  Score=77.25  Aligned_cols=59  Identities=29%  Similarity=0.463  Sum_probs=31.1

Q ss_pred             ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923          23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      |+.|+|++|+|+.||..+.  ++|+.|+|++|+|+.  +|..+.  ++|+.|+|++|+|+.+|..
T Consensus       243 L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt~LP~~  301 (754)
T PRK15370        243 IQEMELSINRITELPERLP--SALQSLDLFHNKISC--LPENLP--EELRYLSVYDNSIRTLPAH  301 (754)
T ss_pred             ccEEECcCCccCcCChhHh--CCCCEEECcCCccCc--cccccC--CCCcEEECCCCccccCccc
Confidence            3444444444444443332  355666666666665  555443  3566666666666665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.93  E-value=4.9e-06  Score=79.48  Aligned_cols=62  Identities=27%  Similarity=0.328  Sum_probs=35.0

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDAL   88 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l   88 (273)
                      +|+.|++++|+|+.||..   ..+|+.|+|++|+|+.  +|..++++++|+.|+|++|+|+ .+|..+
T Consensus       403 ~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            344444444444444432   1245556666666665  6666666677777777777776 444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.92  E-value=1.4e-05  Score=76.55  Aligned_cols=59  Identities=31%  Similarity=0.439  Sum_probs=26.7

Q ss_pred             ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923          23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      |+.|++++|.|+.||..+.  ++|+.|+|++|+|+.  +|..+.  ++|+.|+|++|+|+.+|..
T Consensus       327 L~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~--LP~~lp--~~L~~LdLs~N~Lt~LP~~  385 (754)
T PRK15370        327 LKTLEAGENALTSLPASLP--PELQVLDVSKNQITV--LPETLP--PTITTLDVSRNALTNLPEN  385 (754)
T ss_pred             ceeccccCCccccCChhhc--CcccEEECCCCCCCc--CChhhc--CCcCEEECCCCcCCCCCHh
Confidence            4444444444444443332  344555555555544  444331  3455555555555544443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.90  E-value=9.6e-06  Score=77.55  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=26.7

Q ss_pred             ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923          44 QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        44 ~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      ++|+.|+|++|+|+.  +|..   .++|+.|++|+|+|+.+|..
T Consensus       382 ~~L~~LdLs~N~Lt~--LP~l---~s~L~~LdLS~N~LssIP~l  420 (788)
T PRK15387        382 SGLKELIVSGNRLTS--LPVL---PSELKELMVSGNRLTSLPML  420 (788)
T ss_pred             cccceEEecCCcccC--CCCc---ccCCCEEEccCCcCCCCCcc
Confidence            356777777777776  6643   25677777777777777754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.87  E-value=5.7e-06  Score=73.88  Aligned_cols=63  Identities=33%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             ccEEEccCCCCCCchhhhcCCc-cCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923          23 TEHLSIVNNNLEKLFGELTELQ-CLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        23 l~~L~l~~N~l~~lp~~~~~l~-~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      ++.|++.+|.++.||+..+.+. +|+.|++++|++..  +|..+..+++|+.|++++|+++.+|..
T Consensus       118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~  181 (394)
T COG4886         118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKL  181 (394)
T ss_pred             eeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhh
Confidence            4445555555555554444442 55555555555554  444444555555555555555544443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.63  E-value=2.5e-05  Score=69.80  Aligned_cols=65  Identities=32%  Similarity=0.562  Sum_probs=61.0

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                      +|+.|++++|.|+.+|..++.++.|+.|+++.|+++.  +|.....+++|+.|++++|+++.+|..+
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i~~l~~~~  205 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEI  205 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCccccCchhh
Confidence            5688999999999999999999999999999999998  9988889999999999999999999875

>KOG1259|consensus

Probab=97.55  E-value=2.4e-05  Score=65.59  Aligned_cols=62  Identities=24%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +.++.|++|+|.|+.+.. +..|++|+.||||+|.|+.  +.-.--.+.+.+.|.|+.|.+..+.
T Consensus       307 Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~LS  368 (490)
T KOG1259|consen  307 PKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKIETLS  368 (490)
T ss_pred             cceeEEeccccceeeehh-hhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhHhhhh
Confidence            477899999999998865 8889999999999999998  6655557788888888888877664

>PLN03210 Resistant to P

Probab=97.54  E-value=0.00018  Score=72.92  Aligned_cols=83  Identities=20%  Similarity=0.246  Sum_probs=57.8

Q ss_pred             CCCCccccCCCCCceecC---------------CCccEEEccCC-CCCCchhhhcCCccCCEeeccCCcCccCCCCcccc
Q psy8923           3 GFEPGTFCMASKSESVTI---------------GLTEHLSIVNN-NLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF   66 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l---------------~~l~~L~l~~N-~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~   66 (273)
                      +.+|.+++++++|+.+.+               ++|+.|+|++| .++.+|..   .++|+.|+|++|.++.  +|..+.
T Consensus       792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~--iP~si~  866 (1153)
T PLN03210        792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE--VPWWIE  866 (1153)
T ss_pred             cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc--ChHHHh
Confidence            457888888777766533               34666666664 33345432   3577788888888887  888888


Q ss_pred             CCCCCCEEeccc-CCCCCccchhhh
Q psy8923          67 HLEDLTTLDLSH-NNIKQIPDALEN   90 (273)
Q Consensus        67 ~l~~L~~L~Ls~-N~l~~ip~~l~~   90 (273)
                      .+++|+.|+|++ |+|+.+|..+..
T Consensus       867 ~l~~L~~L~L~~C~~L~~l~~~~~~  891 (1153)
T PLN03210        867 KFSNLSFLDMNGCNNLQRVSLNISK  891 (1153)
T ss_pred             cCCCCCEEECCCCCCcCccCccccc
Confidence            888888888887 677777765544

syringae 6; Provisional

>KOG1859|consensus

Probab=97.43  E-value=1.5e-05  Score=73.98  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=18.2

Q ss_pred             ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCcc
Q psy8923          23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN   58 (273)
Q Consensus        23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~   58 (273)
                      |+.|+|++|+++... .+..|++|++|||+.|.|..
T Consensus       189 le~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~  223 (1096)
T KOG1859|consen  189 LESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRH  223 (1096)
T ss_pred             hhhhccchhhhhhhH-HHHhcccccccccccchhcc
Confidence            344555555555443 44455555555555555554

>KOG0531|consensus

Probab=97.43  E-value=5.9e-05  Score=67.95  Aligned_cols=63  Identities=35%  Similarity=0.450  Sum_probs=42.5

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .+|+.|++.+|+|+.|...+..+++|++|+|++|+|+.  +. .+..++.|+.|++++|+++.++.
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~--i~-~l~~l~~L~~L~l~~N~i~~~~~  157 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK--LE-GLSTLTLLKELNLSGNLISDISG  157 (414)
T ss_pred             cceeeeeccccchhhcccchhhhhcchheecccccccc--cc-chhhccchhhheeccCcchhccC
Confidence            35566777777777776656677777777777777776  43 44455667777777777666554

>KOG1859|consensus

Probab=97.41  E-value=1.2e-05  Score=74.67  Aligned_cols=65  Identities=31%  Similarity=0.375  Sum_probs=59.0

Q ss_pred             cCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          19 TIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        19 ~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++..|...+.+.|.++.+..++.-++.|+.|||++|+++.  +- .+..|+.|++||||+|.|+.+|.
T Consensus       162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~L~~vp~  226 (1096)
T KOG1859|consen  162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNCLRHVPQ  226 (1096)
T ss_pred             hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh--hH-HHHhcccccccccccchhccccc
Confidence            4557788999999999999999999999999999999997  54 77799999999999999999986

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.36  E-value=5.6e-05  Score=37.88  Aligned_cols=20  Identities=25%  Similarity=0.375  Sum_probs=11.6

Q ss_pred             ccEEEccCCCCCCchhhhcC
Q psy8923          23 TEHLSIVNNNLEKLFGELTE   42 (273)
Q Consensus        23 l~~L~l~~N~l~~lp~~~~~   42 (273)
                      |++|||++|+|+.||++|++
T Consensus         2 L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTTTTT
T ss_pred             ccEEECCCCcCEeCChhhcC
Confidence            45566666666666654543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4658|consensus

Probab=97.30  E-value=0.00011  Score=71.66  Aligned_cols=56  Identities=32%  Similarity=0.405  Sum_probs=29.3

Q ss_pred             ccEEEccCC-CCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923          23 TEHLSIVNN-NLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN   80 (273)
Q Consensus        23 l~~L~l~~N-~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~   80 (273)
                      |++|||++| .+..+|.+++.|-+|++|+|++..++.  +|..+.+|..|.+|++.++.
T Consensus       573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIYLNLEVTG  629 (889)
T ss_pred             eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhheecccccc
Confidence            344555543 334455555555555555555555554  55555555555555555443

>KOG1644|consensus

Probab=97.16  E-value=0.00034  Score=55.55  Aligned_cols=63  Identities=37%  Similarity=0.483  Sum_probs=50.1

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .+...+||++|.|..++ .|..++.|.+|.|.+|+|+.  |.+.+. -+++|..|.|.+|+|.++.+
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~d  105 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGD  105 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhh
Confidence            36677899999988764 35568899999999999998  887777 55789999999998876643

>PLN03210 Resistant to P

Probab=97.10  E-value=0.00098  Score=67.64  Aligned_cols=68  Identities=32%  Similarity=0.504  Sum_probs=45.9

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCc-CccCCCCccccCCCCCCEEecccCC-CCCccchhhhh
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNK-IKNSGIPVDLFHLEDLTTLDLSHNN-IKQIPDALENA   91 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~-l~~~~ip~~~~~l~~L~~L~Ls~N~-l~~ip~~l~~w   91 (273)
                      .+|+.|+|++|+|+.+|..+..+++|+.|+|++|. +..  +| .+..+++|+.|+|++|. +..+|..+..+
T Consensus       611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~--ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L  680 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE--IP-DLSMATNLETLKLSDCSSLVELPSSIQYL  680 (1153)
T ss_pred             cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc--CC-ccccCCcccEEEecCCCCccccchhhhcc
Confidence            36777777777777777767777777777777654 443  66 35667777777777653 44677665443

syringae 6; Provisional

>KOG0531|consensus

Probab=97.03  E-value=0.00022  Score=64.27  Aligned_cols=63  Identities=38%  Similarity=0.445  Sum_probs=52.4

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +.+|++|+|++|+|+.|.+ +..|+.|+.|++++|.|+.  ++ .+..+++|+.+++++|+++.++.
T Consensus       117 ~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~--~~-~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  117 LVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISD--IS-GLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hhcchheeccccccccccc-hhhccchhhheeccCcchh--cc-CCccchhhhcccCCcchhhhhhh
Confidence            3467889999999999853 3456679999999999997  54 55669999999999999998776

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.99  E-value=0.00045  Score=32.15  Aligned_cols=16  Identities=50%  Similarity=0.879  Sum_probs=7.4

Q ss_pred             CCCEEecccCCCCCcc
Q psy8923          70 DLTTLDLSHNNIKQIP   85 (273)
Q Consensus        70 ~L~~L~Ls~N~l~~ip   85 (273)
                      +|+.|+|++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666666554

...

>KOG4658|consensus

Probab=96.99  E-value=0.00045  Score=67.55  Aligned_cols=70  Identities=31%  Similarity=0.367  Sum_probs=60.7

Q ss_pred             CccEEEccCCC--CCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhhh
Q psy8923          22 LTEHLSIVNNN--LEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAK   92 (273)
Q Consensus        22 ~l~~L~l~~N~--l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w~   92 (273)
                      +|+.|-+..|.  +..++ ..|..|+.|+.|||++|.=- +.+|+.+++|-+|++|+|++..++.+|..+..+.
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk  618 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLK  618 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCCccccchHHHHHH
Confidence            67889999996  67777 55888999999999987633 2599999999999999999999999999988764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.97  E-value=0.00068  Score=58.44  Aligned_cols=63  Identities=30%  Similarity=0.335  Sum_probs=47.2

Q ss_pred             CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCCC
Q psy8923          21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~~   83 (273)
                      ++|+.|+|++|.+++     ++..+..+++|+.|++++|.+++.   .++..+..+++|+.|+|++|.++.
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence            466889999999883     445677788899999999988831   133445566789999999998873

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.92  E-value=0.00065  Score=58.55  Aligned_cols=61  Identities=30%  Similarity=0.399  Sum_probs=49.4

Q ss_pred             CccEEEccCCCCCC-----chhhhcCC-ccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVNNNLEK-----LFGELTEL-QCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~-----lp~~~~~l-~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      +|+.|++++|+++.     +...+..+ ++|+.|++++|.++..   .++..+..+++|+.|++++|.++
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            38899999999984     34567777 9999999999999931   13445567889999999999998

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.89  E-value=0.00034  Score=35.00  Aligned_cols=17  Identities=53%  Similarity=0.772  Sum_probs=8.2

Q ss_pred             CCEEecccCCCCCccch
Q psy8923          71 LTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        71 L~~L~Ls~N~l~~ip~~   87 (273)
                      |++||||+|+|+.||+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44455555554444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739|consensus

Probab=96.84  E-value=0.00068  Score=55.81  Aligned_cols=42  Identities=33%  Similarity=0.464  Sum_probs=22.3

Q ss_pred             hcCCccCCEeeccCC--cCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          40 LTELQCLRTLNLRYN--KIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        40 ~~~l~~L~~L~l~~N--~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      |..|++|+.|.+|.|  +++. .++.-+-.+++|++|+||.|+++
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCccc
Confidence            334556666666666  4443 34433334466666666666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.78  E-value=0.0011  Score=34.58  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=16.7

Q ss_pred             CCCCCEEecccCCCCCccchhh
Q psy8923          68 LEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        68 l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      |++|+.|+|++|+|+.||...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4677888888888888877655

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.78  E-value=0.0011  Score=34.58  Aligned_cols=22  Identities=36%  Similarity=0.579  Sum_probs=16.7

Q ss_pred             CCCCCEEecccCCCCCccchhh
Q psy8923          68 LEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        68 l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      |++|+.|+|++|+|+.||...+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4677888888888888877655

>KOG1644|consensus

Probab=96.62  E-value=0.002  Score=51.22  Aligned_cols=63  Identities=25%  Similarity=0.261  Sum_probs=52.5

Q ss_pred             CCccEEEccCCCCCCchhhhcC-CccCCEeeccCCcCccCCCCc--cccCCCCCCEEecccCCCCCcc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTE-LQCLRTLNLRYNKIKNSGIPV--DLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~-l~~L~~L~l~~N~l~~~~ip~--~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +.|.+|.|++|+|+.|-+.+.. +++|+.|.|.+|+|..  +-+  .+..|+.|++|.+-+|+.+..+
T Consensus        64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~--l~dl~pLa~~p~L~~Ltll~Npv~~k~  129 (233)
T KOG1644|consen   64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE--LGDLDPLASCPKLEYLTLLGNPVEHKK  129 (233)
T ss_pred             cccceEEecCCcceeeccchhhhccccceEEecCcchhh--hhhcchhccCCccceeeecCCchhccc
Confidence            5789999999999999655554 5889999999999987  654  3458899999999999988554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.15  E-value=0.003  Score=29.33  Aligned_cols=15  Identities=33%  Similarity=0.383  Sum_probs=5.3

Q ss_pred             ccEEEccCCCCCCch
Q psy8923          23 TEHLSIVNNNLEKLF   37 (273)
Q Consensus        23 l~~L~l~~N~l~~lp   37 (273)
                      |+.|+|++|+|+.+|
T Consensus         3 L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    3 LRTLDLSNNRLTSLP   17 (17)
T ss_dssp             -SEEEETSS--SSE-
T ss_pred             cCEEECCCCCCCCCc
Confidence            344555555544443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.09  E-value=0.0041  Score=32.30  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=13.6

Q ss_pred             CccCCEeeccCCcCccCCCCcccc
Q psy8923          43 LQCLRTLNLRYNKIKNSGIPVDLF   66 (273)
Q Consensus        43 l~~L~~L~l~~N~l~~~~ip~~~~   66 (273)
                      |++|+.|+|++|+|+.  +|..++
T Consensus         1 L~~L~~L~L~~N~l~~--lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSS--LPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCc--CCHHHc
Confidence            3556666666666666  665544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.09  E-value=0.0041  Score=32.30  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=13.6

Q ss_pred             CccCCEeeccCCcCccCCCCcccc
Q psy8923          43 LQCLRTLNLRYNKIKNSGIPVDLF   66 (273)
Q Consensus        43 l~~L~~L~l~~N~l~~~~ip~~~~   66 (273)
                      |++|+.|+|++|+|+.  +|..++
T Consensus         1 L~~L~~L~L~~N~l~~--lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSS--LPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCc--CCHHHc
Confidence            3556666666666666  665544

>KOG2739|consensus

Probab=96.03  E-value=0.0046  Score=51.03  Aligned_cols=61  Identities=30%  Similarity=0.337  Sum_probs=47.8

Q ss_pred             CCccEEEccCC--CCCC-chhhhcCCccCCEeeccCCcCccCCCCccc---cCCCCCCEEecccCCCCCc
Q psy8923          21 GLTEHLSIVNN--NLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDL---FHLEDLTTLDLSHNNIKQI   84 (273)
Q Consensus        21 ~~l~~L~l~~N--~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~---~~l~~L~~L~Ls~N~l~~i   84 (273)
                      ++|+.|.++.|  ++++ ++.....+++|++|+|++|+|+.   +.++   ..+.+|..|++..+.-+.+
T Consensus        65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~---lstl~pl~~l~nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD---LSTLRPLKELENLKSLDLFNCSVTNL  131 (260)
T ss_pred             chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc---ccccchhhhhcchhhhhcccCCcccc
Confidence            58999999999  6664 66555566999999999999983   4443   4778899999988876543

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.01  E-value=0.0072  Score=53.78  Aligned_cols=63  Identities=21%  Similarity=0.351  Sum_probs=40.6

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccC-CcCccCCCCccccCCCCCCEEecccC-CCCCccchhhh
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRY-NKIKNSGIPVDLFHLEDLTTLDLSHN-NIKQIPDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~-N~l~~~~ip~~~~~l~~L~~L~Ls~N-~l~~ip~~l~~   90 (273)
                      .++++|++++|.|+.+|.   --++|+.|.+++ ++++.  +|..+  .++|+.|++++| +++.+|..+..
T Consensus        52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~  116 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISGLPESVRS  116 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccccccccccce
Confidence            456778888888888772   124577777775 55665  66544  246777777776 56666665443

>KOG3207|consensus

Probab=95.96  E-value=0.0042  Score=54.88  Aligned_cols=65  Identities=28%  Similarity=0.303  Sum_probs=42.5

Q ss_pred             CccEEEccCCCCCCch--hhhcCCccCCEeeccCCcCccCCCCcc-----ccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVD-----LFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp--~~~~~l~~L~~L~l~~N~l~~~~ip~~-----~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .|+.|||++|++-..+  ...+.|+.|..|+++.+.+.+=.+|+.     ...+++|++|+++.|++...++
T Consensus       247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS  318 (505)
T ss_pred             HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence            4566777777777665  666777777777777777765223333     2356777888888887765553

>KOG3207|consensus

Probab=95.34  E-value=0.0041  Score=54.92  Aligned_cols=66  Identities=24%  Similarity=0.192  Sum_probs=42.2

Q ss_pred             cCCCccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          19 TIGLTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        19 ~l~~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      .++.|+.|.|+.+.|+.  +-......++|..|+|..|..-. .--.....+..|+.|||++|++-..+
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~N~li~~~  262 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSNNNLIDFD  262 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccCCcccccc
Confidence            34577778888888775  44555667788888888774221 01222334567778888888777665

>KOG2982|consensus

Probab=95.18  E-value=0.019  Score=48.66  Aligned_cols=60  Identities=25%  Similarity=0.297  Sum_probs=42.2

Q ss_pred             CccEEEccCCCCCCc---hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVNNNLEKL---FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~l---p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      .++.|||..|.|+.+   -..+.+|+.|++|+|+.|.|+. .|-.-=..+.+|+.|-|.+..|.
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp~p~~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLPLPLKNLRVLVLNGTGLS  134 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCcccccceEEEEEcCCCCC
Confidence            567799999999975   4567789999999999999986 33211123456666666655443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=95.04  E-value=0.013  Score=30.25  Aligned_cols=18  Identities=28%  Similarity=0.669  Sum_probs=15.0

Q ss_pred             CCCCEEecccCCCCCccc
Q psy8923          69 EDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        69 ~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|+.|++|+|+|+++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467888888898888887

>KOG2982|consensus

Probab=95.03  E-value=0.031  Score=47.37  Aligned_cols=63  Identities=24%  Similarity=0.267  Sum_probs=45.6

Q ss_pred             CCCccEEEccCCCCCCchhhh-cCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          20 IGLTEHLSIVNNNLEKLFGEL-TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~-~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      ++.|+.|+|+.|++..--.++ ..+.+|+.|-|.+-.|.-...-.....++.++.|.+|.|++.
T Consensus        96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen   96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            467899999999999622222 467899999988877654223344557888899999999655

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.95  E-value=0.028  Score=50.14  Aligned_cols=59  Identities=27%  Similarity=0.481  Sum_probs=34.4

Q ss_pred             CccEEEccC-CCCCCchhhhcCCccCCEeeccCC-cCccCCCCccccCCCCCCEEecccCC---CCCccchhhh
Q psy8923          22 LTEHLSIVN-NNLEKLFGELTELQCLRTLNLRYN-KIKNSGIPVDLFHLEDLTTLDLSHNN---IKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~-N~l~~lp~~~~~l~~L~~L~l~~N-~l~~~~ip~~~~~l~~L~~L~Ls~N~---l~~ip~~l~~   90 (273)
                      +|+.|.+++ +.++.+|..+.  ++|+.|++++| ++..  +|+.      |+.|+++.|.   +..+|..|..
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s--LP~s------Le~L~L~~n~~~~L~~LPssLk~  136 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG--LPES------VRSLEIKGSATDSIKNVPNGLTS  136 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc--cccc------cceEEeCCCCCcccccCcchHhh
Confidence            577777776 56666665442  56777777776 5555  6543      4444555544   3355554443

>KOG3665|consensus

Probab=94.78  E-value=0.018  Score=55.09  Aligned_cols=67  Identities=24%  Similarity=0.380  Sum_probs=49.5

Q ss_pred             cCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          19 TIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        19 ~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++++|..||+|+.+|+.+ .-++.|++|+.|-+.+=.+....--..+++|++|+.||+|..+....+.
T Consensus       171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~  237 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK  237 (699)
T ss_pred             ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH
Confidence            456889999999999977 5567788888887777666541122367788999999999887775553

>KOG1984|consensus

Probab=94.77  E-value=0.058  Score=51.53  Aligned_cols=59  Identities=24%  Similarity=0.341  Sum_probs=43.6

Q ss_pred             eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHH
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFL  221 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~  221 (273)
                      +|++-++.-...+....+....|.++.++|+...||+|++|.++|+|+|...+.+-.+-
T Consensus       859 Prl~p~hdl~i~dtl~~~~p~~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~llQ~  917 (1007)
T KOG1984|consen  859 PRLLPFHDLDIEDTLEFVLPKAVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPDLLQD  917 (1007)
T ss_pred             cceeeeeccccccccccccccceecchhhccCCceEEEecCcEEEEEecCCCCHHHHHH
Confidence            67877776521111222344557889999999999999999999999999998885443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.39  E-value=0.062  Score=39.54  Aligned_cols=70  Identities=21%  Similarity=0.387  Sum_probs=35.9

Q ss_pred             cccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCcc
Q psy8923           8 TFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus         8 ~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip   85 (273)
                      .|..+++|        +.+.+.+ .++.|+ ..|.++++|+.+.+..+ +..  ++...+ ++++|+.+.+.. .+..++
T Consensus         7 ~F~~~~~l--------~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~--i~~~~F~~~~~l~~i~~~~-~~~~i~   73 (129)
T PF13306_consen    7 AFYNCSNL--------ESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS--IGDNAFSNCKSLESITFPN-NLKSIG   73 (129)
T ss_dssp             TTTT-TT----------EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC--E-TTTTTT-TT-EEEEETS-TT-EE-
T ss_pred             HHhCCCCC--------CEEEECC-CeeEeChhhccccccccccccccc-ccc--cceeeeecccccccccccc-cccccc
Confidence            45555566        4466663 566676 66777777888877764 665  666544 666777777754 555566


Q ss_pred             chhhh
Q psy8923          86 DALEN   90 (273)
Q Consensus        86 ~~l~~   90 (273)
                      ...+.
T Consensus        74 ~~~F~   78 (129)
T PF13306_consen   74 DNAFS   78 (129)
T ss_dssp             TTTTT
T ss_pred             ccccc
Confidence            54444

>KOG0473|consensus

Probab=94.11  E-value=0.0022  Score=52.22  Aligned_cols=59  Identities=8%  Similarity=-0.024  Sum_probs=40.4

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      .|..|+++.|+|.-+|..++++..+..+++..|+++.  .|.+++.+++++.+++-.|.|+
T Consensus        66 ~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~--~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   66 RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQ--QPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhh--CCccccccCCcchhhhccCcch
Confidence            4555666667776677777777777777777777776  6777777777777776666654

>KOG0473|consensus

Probab=93.63  E-value=0.0013  Score=53.42  Aligned_cols=68  Identities=25%  Similarity=0.260  Sum_probs=57.4

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      ...+.||++.|++-.+-..|..++.|..|+++.|++..  +|.+++.+..+..+++..|+++..|-....
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence            35677999999998888888888999999999999988  999999888888889888888877765543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=93.04  E-value=0.073  Score=27.63  Aligned_cols=18  Identities=56%  Similarity=0.792  Sum_probs=13.1

Q ss_pred             CCCCCEEecccCCCCCcc
Q psy8923          68 LEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        68 l~~L~~L~Ls~N~l~~ip   85 (273)
                      +++|+.|+|+.|+++.|.
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            467788888888877653

>KOG2123|consensus

Probab=92.75  E-value=0.011  Score=49.54  Aligned_cols=60  Identities=33%  Similarity=0.311  Sum_probs=39.3

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCc--cccCCCCCCEEecccCCCC
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPV--DLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~--~~~~l~~L~~L~Ls~N~l~   82 (273)
                      ++.|++|.||-|+|+.+. .+..+++|+.|+|..|.|..  +-+  -+.++++|+.|-|..|...
T Consensus        40 Mp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             cccceeEEeeccccccch-hHHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhHhhccCCcc
Confidence            345667777777777663 24456777777777777776  543  2336777777777777654

>KOG1909|consensus

Probab=92.66  E-value=0.059  Score=46.49  Aligned_cols=61  Identities=20%  Similarity=0.257  Sum_probs=31.3

Q ss_pred             CccEEEccCCCCCC--c---hhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVNNNLEK--L---FGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~--l---p~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      .|+.+.++.|.|..  +   -..|..+++|+.|||..|.++..   .+-..+..+++|+.|++++..++
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            33445566665552  2   24555666666666666665530   01123334555666666665554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=92.12  E-value=0.094  Score=27.14  Aligned_cols=18  Identities=28%  Similarity=0.595  Sum_probs=12.9

Q ss_pred             ccCCEeeccCCcCccCCCCc
Q psy8923          44 QCLRTLNLRYNKIKNSGIPV   63 (273)
Q Consensus        44 ~~L~~L~l~~N~l~~~~ip~   63 (273)
                      ++|+.|++++|+|+.  +|+
T Consensus         2 ~~L~~L~vs~N~Lt~--LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTS--LPE   19 (26)
T ss_pred             cccceeecCCCcccc--Ccc
Confidence            357777777777777  775

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=91.49  E-value=0.18  Score=47.76  Aligned_cols=26  Identities=31%  Similarity=0.744  Sum_probs=23.3

Q ss_pred             EEEEeCCceEEEEeCCCcchHhHHhH
Q psy8923         241 VFLLDAGLKLFIWNGPKAKNTFKSKT  266 (273)
Q Consensus       241 v~~ld~~~~~~~w~G~~a~~~~~~~~  266 (273)
                      +|++|+|.++|+|+|+.|++.=..+.
T Consensus       748 lYLidtg~~iflw~g~d~~p~Ll~dl  773 (861)
T COG5028         748 LYLIDTGQKIFLWFGKDAVPSLLQDL  773 (861)
T ss_pred             eEEEEcCCEEEEEecCCCCHHHHHHh
Confidence            99999999999999999998766554

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=91.41  E-value=0.21  Score=47.24  Aligned_cols=60  Identities=27%  Similarity=0.445  Sum_probs=43.6

Q ss_pred             eeEEEEecCcccCC----CCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHh
Q psy8923         163 TRLYRVHAPLHQAQ----ASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLL  222 (273)
Q Consensus       163 ~~L~~v~g~~~~~~----~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~  222 (273)
                      |++|-+++-+-+.+    ........+.++.+.|+++.+|++|+|.++|+|.|+.+++.-.+..
T Consensus       710 P~lyalHdm~~e~~l~~~~~~~~~~piNaT~s~le~~GlYLidtg~~iflw~g~d~~p~Ll~dl  773 (861)
T COG5028         710 PTLYALHDMPIEAGLPDEGLLVLPSPINATSSLLESGGLYLIDTGQKIFLWFGKDAVPSLLQDL  773 (861)
T ss_pred             cceeeecccccccCCCcccccccccchhhhHHHHhcCCeEEEEcCCEEEEEecCCCCHHHHHHh
Confidence            67887774321211    1233444456778899999999999999999999999999865554

>PTZ00395 Sec24-related protein; Provisional

Probab=89.48  E-value=0.33  Score=48.98  Aligned_cols=25  Identities=24%  Similarity=0.595  Sum_probs=22.5

Q ss_pred             EEEEeCCceEEEEeCCCcchHhHHh
Q psy8923         241 VFLLDAGLKLFIWNGPKAKNTFKSK  265 (273)
Q Consensus       241 v~~ld~~~~~~~w~G~~a~~~~~~~  265 (273)
                      |||||+|..+|+|||+.++++--.+
T Consensus      1446 IYLLDNGe~IyLWVG~~V~PqLLqD 1470 (1560)
T PTZ00395       1446 IYLLDACTHFYLYFGFHSDANFAKE 1470 (1560)
T ss_pred             EEEEECCCEEEEEECCCCCHHHHHH
Confidence            9999999999999999999876544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.23  E-value=0.5  Score=34.54  Aligned_cols=59  Identities=20%  Similarity=0.411  Sum_probs=28.5

Q ss_pred             cEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccch
Q psy8923          24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        24 ~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      +.+.+.++ ++.++ ..|..+++|+.+.+.. .+..  ++...+ .+++|+.+++..| ++.++..
T Consensus        38 ~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~--i~~~~F~~~~~l~~i~~~~~-~~~i~~~   98 (129)
T PF13306_consen   38 KSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS--IGDNAFSNCTNLKNIDIPSN-ITEIGSS   98 (129)
T ss_dssp             SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E--E-TTTTTT-TTECEEEETTT--BEEHTT
T ss_pred             cccccccc-ccccceeeeecccccccccccc-cccc--cccccccccccccccccCcc-ccEEchh
Confidence            44665553 66665 5566666666666654 4443  444444 3666666666544 4455443

>KOG1909|consensus

Probab=89.17  E-value=0.27  Score=42.55  Aligned_cols=63  Identities=25%  Similarity=0.280  Sum_probs=50.5

Q ss_pred             CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCCC---CccccCCCCCCEEecccCCCCC
Q psy8923          21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSGI---PVDLFHLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~i---p~~~~~l~~L~~L~Ls~N~l~~   83 (273)
                      +.|++++.++|++..     +-..|...+.|+.+.++.|.|....+   -.++..+++|+.|||..|-|+.
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~  227 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL  227 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence            478999999999985     34667788999999999999864112   2356689999999999999983

>KOG3665|consensus

Probab=89.10  E-value=0.18  Score=48.51  Aligned_cols=68  Identities=22%  Similarity=0.300  Sum_probs=49.8

Q ss_pred             CccEEEccCCCCC--CchhhhcC-CccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLE--KLFGELTE-LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~--~lp~~~~~-l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +|++|++++...-  +.|..++. ||+|+.|.+++=.+....+-.-..++++|..||+|+-+++.+ .++..
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~  193 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR  193 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc
Confidence            7888999997554  37766665 699999999987776522222233889999999999998877 44444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.08  E-value=0.17  Score=25.43  Aligned_cols=15  Identities=53%  Similarity=0.663  Sum_probs=9.6

Q ss_pred             CCCCCEEecccCCCC
Q psy8923          68 LEDLTTLDLSHNNIK   82 (273)
Q Consensus        68 l~~L~~L~Ls~N~l~   82 (273)
                      +++|+.|+|++|+|+
T Consensus         1 ~~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    1 NPNLETLDLSNNQIT   15 (24)
T ss_dssp             -TT-SEEE-TSSBEH
T ss_pred             CCCCCEEEccCCcCC
Confidence            467888888888876

...

>KOG1985|consensus

Probab=88.83  E-value=0.34  Score=46.27  Aligned_cols=21  Identities=38%  Similarity=0.975  Sum_probs=19.8

Q ss_pred             EEEEeCCceEEEEeCCCcchH
Q psy8923         241 VFLLDAGLKLFIWNGPKAKNT  261 (273)
Q Consensus       241 v~~ld~~~~~~~w~G~~a~~~  261 (273)
                      +|++|+|.++|+|+|+.|.+.
T Consensus       775 lyL~D~g~~lfl~vg~~a~P~  795 (887)
T KOG1985|consen  775 LYLMDTGTTLFLWVGSNADPS  795 (887)
T ss_pred             eEEEecCcEEEEEEcCCCCcc
Confidence            999999999999999999875

>KOG1984|consensus

Probab=88.69  E-value=0.55  Score=45.21  Aligned_cols=29  Identities=28%  Similarity=0.635  Sum_probs=24.9

Q ss_pred             CceEEEEeCCceEEEEeCCCcchHhHHhH
Q psy8923         238 NTFVFLLDAGLKLFIWNGPKAKNTFKSKT  266 (273)
Q Consensus       238 ~~~v~~ld~~~~~~~w~G~~a~~~~~~~~  266 (273)
                      +..||+||+|..+|+|+|+..+..-.++-
T Consensus       890 negiYll~nG~~~ylwvg~sv~~~llQ~l  918 (1007)
T KOG1984|consen  890 NEGIYLLDNGQKIYLWVGESVDPDLLQDL  918 (1007)
T ss_pred             CCceEEEecCcEEEEEecCCCCHHHHHHH
Confidence            34599999999999999999998877654

>PTZ00395 Sec24-related protein; Provisional

Probab=87.18  E-value=0.62  Score=47.19  Aligned_cols=36  Identities=22%  Similarity=0.481  Sum_probs=32.1

Q ss_pred             EecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHH
Q psy8923         184 PVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFV  219 (273)
Q Consensus       184 ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~  219 (273)
                      .++++.+.|.++-||+||+|..+|+|+|+.+++.-.
T Consensus      1433 ~LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~PqLL 1468 (1560)
T PTZ00395       1433 TIPSSAEKIYSNGIYLLDACTHFYLYFGFHSDANFA 1468 (1560)
T ss_pred             cccchHHHhcCCcEEEEECCCEEEEEECCCCCHHHH
Confidence            356788899999999999999999999999998754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.83  E-value=0.58  Score=39.42  Aligned_cols=14  Identities=7%  Similarity=0.128  Sum_probs=9.5

Q ss_pred             CccEEEccCCCCCC
Q psy8923          22 LTEHLSIVNNNLEK   35 (273)
Q Consensus        22 ~l~~L~l~~N~l~~   35 (273)
                      .++.++||+|.|..
T Consensus        31 ~~~evdLSGNtigt   44 (388)
T COG5238          31 ELVEVDLSGNTIGT   44 (388)
T ss_pred             ceeEEeccCCcccH
Confidence            45667777777763

>KOG1985|consensus

Probab=86.04  E-value=0.61  Score=44.64  Aligned_cols=58  Identities=29%  Similarity=0.560  Sum_probs=40.5

Q ss_pred             eeEEEEecCcccCCCC---ce--EEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923         163 TRLYRVHAPLHQAQAS---SI--HLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF  220 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~---~~--~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~  220 (273)
                      +.||+++.-..+.+..   ..  .-...+.++..|.++-+|++|+|..+|+|.|+.|++.--+
T Consensus       736 P~Lysl~~l~~ea~~~~~d~~~~~p~~L~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P~ll~  798 (887)
T KOG1985|consen  736 PTLYSLHDLDDEAGLPIHDQTVVLPPPLNLTAELLSRRGLYLMDTGTTLFLWVGSNADPSLLF  798 (887)
T ss_pred             ccceeccccccccCcccccccccCCCccchHHHHhccCceEEEecCcEEEEEEcCCCCccccc
Confidence            6788887652211100   00  0122457788899999999999999999999999987433

>KOG2123|consensus

Probab=85.64  E-value=0.071  Score=44.85  Aligned_cols=60  Identities=23%  Similarity=0.326  Sum_probs=48.0

Q ss_pred             ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .+.|+.-+..|+.| ..+..|+.|+.|.||-|+|+.  + ..+..|++|+.|+|..|.|.++-+
T Consensus        21 vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIss--L-~pl~rCtrLkElYLRkN~I~sldE   80 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISS--L-APLQRCTRLKELYLRKNCIESLDE   80 (388)
T ss_pred             hhhhcccCCCccHH-HHHHhcccceeEEeecccccc--c-hhHHHHHHHHHHHHHhcccccHHH
Confidence            34466666666654 446679999999999999997  4 356789999999999999887765

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.57  E-value=0.65  Score=24.40  Aligned_cols=14  Identities=43%  Similarity=0.622  Sum_probs=11.6

Q ss_pred             CCCCEEecccCCCC
Q psy8923          69 EDLTTLDLSHNNIK   82 (273)
Q Consensus        69 ~~L~~L~Ls~N~l~   82 (273)
                      ++|++|||++|.|+
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            57888999999876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=83.74  E-value=1.1  Score=37.75  Aligned_cols=47  Identities=26%  Similarity=0.340  Sum_probs=38.1

Q ss_pred             hhhcCCccCCEeeccCCcCccCCCCcccc----CCCCCCEEecccCCCCCcc
Q psy8923          38 GELTELQCLRTLNLRYNKIKNSGIPVDLF----HLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        38 ~~~~~l~~L~~L~l~~N~l~~~~ip~~~~----~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +.+.+|++|+..+||.|-+.. ..|+.+.    .-+.|.+|.|++|-+..+.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~-~~~e~L~d~is~~t~l~HL~l~NnGlGp~a  136 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGS-EFPEELGDLISSSTDLVHLKLNNNGLGPIA  136 (388)
T ss_pred             HHHhcCCcceeeeccccccCc-ccchHHHHHHhcCCCceeEEeecCCCCccc
Confidence            567788999999999999986 6776544    6688999999999887553

>KOG2120|consensus

Probab=81.40  E-value=0.18  Score=42.92  Aligned_cols=60  Identities=23%  Similarity=0.328  Sum_probs=48.1

Q ss_pred             CccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEeccc-CCCC
Q psy8923          22 LTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH-NNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~-N~l~   82 (273)
                      .|++||||+..|+.  +-..+..+++|+.|.|-+++|.. .|-..+..=.+|+.|+||. |-|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t  248 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFT  248 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccc
Confidence            58899999999996  56778889999999999999996 6666666667888888875 3344

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	273
1jhw_A	347	Ca2+-Binding Mimicry In The Crystal Structure Of Th		1e-09
1j72_A	347	Crystal Structure Of Mutant Macrophage Capping Prot		5e-09
1rgi_G	346	Crystal Structure Of Gelsolin Domains G1-G3 Bound T		1e-08
2fgh_A	731	Atp Bound Gelsolin Length = 731		2e-08
1d0n_A	729	The Crystal Structure Of Calcium-Free Equine Plasma		3e-08
3ffk_A	377	Crystal Structure Of Human Gelsolin Domains G1-G3 B		5e-08
3ffn_A	782	Crystal Structure Of Calcium-Free Human Gelsolin Le		9e-08

>pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G Length = 347

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
           +++ D++   A+ AV L ++L       RE QG+ES+ F+S F  G+ Y EGG   SGF 
Sbjct: 68  QSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGG-VESGFK 126
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPK 213
             V + V   RLY+V        A +I      +  +S +    F+LD G  +F W G K
Sbjct: 127 HVVPNEVVVQRLYQVKG------AKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGK 180
Query: 214 A 214
           +
Sbjct: 181 S 181

>pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein (Cap G) With Actin-Severing Activity In The Ca2+-Free Form Length = 347

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
           +++ D++   A+ AV L ++L       RE QG+ES+ F+S F  G+ Y EGG   SGF 
Sbjct: 68  QSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGG-VESGFK 126
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPK 213
             V + V   RLY+V          +I      +  +S +    F+LD G  +F W G K
Sbjct: 127 HVVPNEVVVQRLYQVKG------KKNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGK 180
Query: 214 A 214
           +
Sbjct: 181 S 181

>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin Length = 346

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 8/121 (6%)
Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
           + + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF 
Sbjct: 67  ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFK 125
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPK 213
             V + V   RL +V           +    VPV  ES +    F+LD G  ++ W G K
Sbjct: 126 HVVPNEVVVQRLLQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSK 179
Query: 214 A 214
           +
Sbjct: 180 S 180

>pdb|2FGH|A Chain A, Atp Bound Gelsolin Length = 731

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 97  TLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF-FT 155
           + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF   
Sbjct: 70  SQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHV 128
Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           V + V   RL +V           +    VPV  ES +    F+LD G  ++ W G K+
Sbjct: 129 VPNEVVVQRLLQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 181

>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma Gelsolin. Length = 729

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 97  TLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF-FT 155
           + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF   
Sbjct: 68  SQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHV 126
Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           V + V   RL +V           +    VPV  ES +    F+LD G  ++ W G K+
Sbjct: 127 VPNEVVVQRLLQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 179

>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To Actin Length = 377

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF- 153
           + + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF 
Sbjct: 70  ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFK 128
Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
             V + V   RL++V           +    VPV  ES +    F+LD G  +  W G
Sbjct: 129 HVVPNEVVVQRLFQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCG 180

>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin Length = 782

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 97  TLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF-FT 155
           + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF   
Sbjct: 121 SQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHV 179
Query: 156 VEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNG 211
           V + V   RL++V           +    VPV  ES +    F+LD G  +  W G
Sbjct: 180 VPNEVVVQRLFQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCG 229

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	273
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	1e-25
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	2e-18
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	2e-06
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	2e-05
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	1e-25
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	3e-07
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	2e-19
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	4e-05
1t44_G	147	Chimera of gelsolin domain 1 and C-terminal domain	2e-17
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	5e-17
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	1e-04
3cip_G	128	Gelsolin; actin, dictyostelium discoideum, actin-a	1e-16
1svq_A	114	Severin; actin-binding; NMR {Dictyostelium discoid	3e-16
2ff3_A	150	Gelsolin; protein-protein complex, structural prot	4e-16
2vik_A	126	Villin 14T; actin-binding protein, capping protein	1e-15
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	4e-15
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
1kcq_A	104	Gelsolin, brevin, ADF, AGEL; alpha-beta structure,	4e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-04

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729

 Score =  105 bits (262), Expect = 1e-25
 Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           + + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  +    
Sbjct: 66  ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKH 125

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            V + V   RL +V           +    VPV  ES +    F+LD G  ++ W G K+
Sbjct: 126 VVPNEVVVQRLLQVKGRRV------VRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKS 179

Query: 215 K 215
            
Sbjct: 180 N 180

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729

 Score = 83.4 bits (205), Expect = 2e-18
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           ++T D+ A SAI    L   L       R  QG E    +SLF      +  G T+    
Sbjct: 444 QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGGTSREGG 503

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
                  +TRL++V A    + + +     +   + +L+    F+L      ++W G  A
Sbjct: 504 QTAPA--STRLFQVRA----SSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGA 557

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 13/120 (10%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
            A+  ++  +      LR     +   + E  G E + F        +Y    R      
Sbjct: 556 GASEAEKTGAQELLRVLRA----QPVQVAE--GSEPDSFWEALGGKATYRTSPRLKD--- 606

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             +   +  RL+     + +     +   P   + E L    V LLD   ++F+W G  +
Sbjct: 607 -KKMDAHPPRLFACSNKIGRFVIEEV---PGEFMQEDLATDDVMLLDTWDQVFVWVGKDS 662

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Length = 729

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 6/124 (4%)

Query: 95  KATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
           K+   +R  +   +  +R N  +   +    E+G E E  L +     +  E        
Sbjct: 178 KSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATE--DTV 235

Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAG--LKLFIWNG 211
                     +LY+V         S +  +  P    +L     F+LD G   K+F+W G
Sbjct: 236 KEDAANRKLAKLYKVSNGAGPMVVS-LVADENPFAQGALRSEDCFILDHGKDGKIFVWKG 294

Query: 212 PKAK 215
            +A 
Sbjct: 295 KQAN 298

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347

 Score =  102 bits (255), Expect = 1e-25
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           +++ D++   A+ AV L ++L       RE QG+ES+ F+S F  G+ Y EGG  +    
Sbjct: 68  QSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKH 127

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            V + V   RLY+V    +      I      +  +S +    F+LD G  +F W G K+
Sbjct: 128 VVPNEVVVQRLYQVKGKKN------IRATERALNWDSFNTGDCFILDLGQNIFAWCGGKS 181

Query: 215 KNT 217
              
Sbjct: 182 NIL 184

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Length = 347

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 95  KATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
           K+ + +R  +   A+ +R +    + +      G+E  E + +       ++ G      
Sbjct: 180 KSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLG-PKPALKEGNPEEDL 238

Query: 154 FTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGL--KLFIWNG 211
              +       LY+V     Q   + +  +  P   E L     F+LD GL  K++IW G
Sbjct: 239 TADKANAQAAALYKVSDATGQMNLTKVA-DSSPFALELLISDDCFVLDNGLCGKIYIWKG 297

Query: 212 PKA 214
            KA
Sbjct: 298 RKA 300

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344

 Score = 85.6 bits (211), Expect = 2e-19
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           ++T D+ A SAI    L   L       R  QG E    +SLF      I  G T+    
Sbjct: 59  QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGG 118

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
                  +TRL++V A      A +     V   + +L+    F+L      ++W G  A
Sbjct: 119 QTAPA--STRLFQVRA----NSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGA 172

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Length = 344

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
            A+  ++  +      LR     +   + E  G E + F        +Y    RT+    
Sbjct: 171 GASEAEKTGAQELLRVLRA----QPVQVAE--GSEPDGFWEALGGKAAY----RTSPRLK 220

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
             +   +  RL+      ++     I   P  ++ E L    V LLD   ++F+W G  +
Sbjct: 221 DKKMDAHPPRLFACS---NKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDS 277

>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 Length = 147

 Score = 76.2 bits (187), Expect = 2e-17
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           + + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF 
Sbjct: 68  ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFK 126

Query: 155 TVEDTVY----TTRLYR 167
            VE        +     
Sbjct: 127 HVETQEKNPLPSKETIE 143

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398

 Score = 79.1 bits (194), Expect = 5e-17
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           +A+ D+   SA  AV L      E   IR   G E    +S+F   +   +GG   S   
Sbjct: 114 QASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGT--SRTN 171

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            +E    +TRL++V        A++     VP  +  L+   VF+L      ++W G   
Sbjct: 172 NLETG-PSTRLFQVQG----TGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGC 226

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} Length = 398

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 16/121 (13%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
             + D+R  + + A  +              +G E   F         Y    R      
Sbjct: 225 GCSGDEREMAKMVADTISR-----TEKQVVVEGQEPANFWMALGGKAPYANTKRLQE--- 276

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLS-ESLDPRFVFLLDAGLKLFIWNGPK 213
             E+ V T RL+         +        +P  + + L+   VFLLD   ++F W G  
Sbjct: 277 --ENLVITPRLFECSN-----KTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKH 329

Query: 214 A 214
           A
Sbjct: 330 A 330

>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S* Length = 128

 Score = 73.4 bits (180), Expect = 1e-16
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
           + + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF
Sbjct: 71  ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGF 128

>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Length = 114

 Score = 72.2 bits (177), Expect = 3e-16
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 151 SGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWN 210
           SGF  V+ T Y  RL  +          +  +  VP+ + SL+    FLLDAGL ++ +N
Sbjct: 1   SGFNHVKPTEYKPRLLHISG------DKNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFN 54

Query: 211 GPKAK 215
           G K+ 
Sbjct: 55  GSKSS 59

>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G* Length = 150

 Score = 72.7 bits (178), Expect = 4e-16
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
           + + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF 
Sbjct: 90  ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFK 148

Query: 155 TV 156
            V
Sbjct: 149 HV 150

>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A Length = 126

 Score = 70.8 bits (173), Expect = 1e-15
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
            ++ D++  +AI+   +  +L +     RE QG ESE F + F  G+ Y +GG  ASG 
Sbjct: 68  NSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG-VASGM 125

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371

 Score = 73.3 bits (179), Expect = 4e-15
 Identities = 35/121 (28%), Positives = 46/121 (38%), Gaps = 7/121 (5%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF 154
            AT D+   SA   V L   L  +   IR  QG E    LSLF      I    T+    
Sbjct: 100 NATRDELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLIIYKNGTSKKGG 159

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGL-KLFIWNGPK 213
             +     TRL++V   L         +  V V + SL+   VF+L       +IW G  
Sbjct: 160 --QAPAPPTRLFQVRRNLAS----ITRIVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKG 213

Query: 214 A 214
           A
Sbjct: 214 A 214

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Length = 371

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 119 CRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQAS 178
           C+T+R ++G+E EEF +       Y       S     +   +  RLY      ++    
Sbjct: 231 CKTLRIQEGEEPEEFWNSLGGKKDYQT-----SPLLETQAEDHPPRLYGCS---NKTGRF 282

Query: 179 SIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            I   P     + L    V LLDA  ++FIW G  A
Sbjct: 283 VIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDA 318

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 9/79 (11%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 24  EHLSIVNNNLEKL---------FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74
           + +++  N                +    + ++ + + YN +K   +   L  ++ L  L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 75  DLSHNNIKQIPDALENAKR 93
           +  +N ++    A  +  +
Sbjct: 336 ECLYNQLEGKLPAFGSEIK 354

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
             L  + N LE           L +LNL YN+I  + IP +     E +  L  +HN +K
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI--TEIPANFCGFTEQVENLSFAHNKLK 390

Query: 83  QIPDALE 89
            IP+  +
Sbjct: 391 YIPNIFD 397

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 27  SIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF--HLEDLTTLDLSHNNIKQI 84
            I  N+L+           L +++LR+NK+  + +  D     L  L  +DLS+N+  + 
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSKF 528

Query: 85  PDALEN 90
           P    N
Sbjct: 529 PTQPLN 534

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNS-----GIPVDLFHLEDLTTLDLSH 78
             + +  N+  K   +      L+   +R  +           P  +     LT L +  
Sbjct: 516 VGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 79  NNIKQIPDAL 88
           N+I+++ + +
Sbjct: 576 NDIRKVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 24  EHLSIVNNNLEKL-----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
           + + I  NNL+         ++ +L     L   YN++   G          L +L+L++
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLG---MLECLYNQL--EGKLPAFGSEIKLASLNLAY 362

Query: 79  NNIKQIPDAL 88
           N I +IP   
Sbjct: 363 NQITEIPANF 372

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 24  EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKN------SGIPVDLFHLEDLTTLD 75
           E+LS  +N L+ +    +   +  +  ++  YN+I +        +    F   ++++++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 76  LSHNNIKQIPDAL 88
           LS+N I + P  L
Sbjct: 440 LSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 24  EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKI------KNSGIPVDLFHLEDLTTLDL 76
             +++ NN + K   E  +    L ++NL  N +             +  +   LT++DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 77  SHNNIKQIPDALENAK 92
             N + ++ D      
Sbjct: 496 RFNKLTKLSDDFRATT 511

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 30  NNNLEKLFGELTELQCLRTLNLRYNKIK-------NSGIPVDLFHLEDLTTLDLSHNNIK 82
             NL KL   L  L  ++ +N+  N+         +     D    E +  + + +NN+K
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 83  QIP 85
             P
Sbjct: 319 TFP 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 19/85 (22%)

Query: 25  HLSIVNNNLEKLFGELTELQCLRTLNLRYNKI------------------KNSGIPVDLF 66
            +  ++NN+  +   +  L  LR   +  +                    +     +   
Sbjct: 187 QIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 67  HLEDLTTLDLSHNN-IKQIPDALEN 90
           +L+DLT +++ +   + ++P  L+ 
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKA 271

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 30  NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
           N  L +    +T    L  L +  N I    +   +    +++ LD+  N    I 
Sbjct: 552 NRTLREWPEGITLCPSLTQLQIGSNDI--RKVNEKI--TPNISVLDIKDNPNISID 603

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 11/69 (15%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH--LEDLTTLDLS 77
             L++  N + ++     G   +++    L+  +NK+    IP       +  ++ +D S
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVE---NLSFAHNKL--KYIPNIFDAKSVSVMSAIDFS 410

Query: 78  HNNIKQIPD 86
           +N I  +  
Sbjct: 411 YNEIGSVDG 419

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 7/78 (8%), Positives = 23/78 (29%), Gaps = 2/78 (2%)

Query: 13  SKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLT 72
                      E+        +    +   L+ L  + +       + +P  L  L ++ 
Sbjct: 219 VAENICEAWENENSE-YAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLKALPEMQ 276

Query: 73  TLDLSHNNIKQIPDALEN 90
            ++++ N         ++
Sbjct: 277 LINVACNRGISGEQLKDD 294

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L I +N++ K+  ++     +  L+++ N    S     +    +     L ++  + 
Sbjct: 569 TQLQIGSNDIRKVNEKI--TPNISVLDIKDNPN-ISIDLSYVCPYIEAGMYMLFYDKTQD 625

Query: 84  IPD 86
           I  
Sbjct: 626 IRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN----SGIPVDLFHLEDLTTLDLSHN 79
           E    +  + +K F  +         +L  + I +      I          T +    N
Sbjct: 136 EQKQKMRMHYQKTF--VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 80  NIKQIPDALEN 90
           NI  +  A+  
Sbjct: 194 NITFVSKAVMR 204

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 24  EHLSIVNNNLEKLFGELTELQC-LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
               I ++  +K   + + +      +    N I  + +   +  L  L    + ++  
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPF 218

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 9/63 (14%), Positives = 23/63 (36%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
              + +  +  +L  +      ++   + YN ++       L  +  L  LD  HN ++ 
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 84  IPD 86
           +  
Sbjct: 588 LEA 590

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
             L  V+N +  L         L  L L YN+I    IP D     + +  L  SHN +K
Sbjct: 576 GLLDCVHNKVRHL-EAFGTNVKLTDLKLDYNQI--EEIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 83  QIPDALE 89
            IP+   
Sbjct: 633 YIPNIFN 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG-----IPVDLFHLEDLTTLDLSH 78
            ++ +  N       +      L+   +R+ +           P  +     L  L +  
Sbjct: 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS 815

Query: 79  NNIKQIPDAL 88
           N+I+++ + L
Sbjct: 816 NDIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 27  SIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH--LEDLTTLDLSHNNIKQI 84
           SI  N+L+   G       L T++LR+NK+  + +  D     L  L+ +D+S+N     
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKL--TSLSDDFRATTLPYLSNMDVSYNCFSSF 768

Query: 85  PDALEN 90
           P    N
Sbjct: 769 PTQPLN 774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 4e-08
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 24  EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKI----KNSGIPVDLFHLEDLTTLDLS 77
           E L   +N L+ +        +  + +++  YNKI    +N    +D +   + +T+ LS
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681

Query: 78  HNNIKQIPDAL 88
           +N I++ P  L
Sbjct: 682 YNEIQKFPTEL 692

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKN------SGIPVDLFHLEDLTTLDL 76
             +++  N ++K           + T+ L  N + +           +  +   LTT+DL
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 77  SHNNIKQIPDALENAK 92
             N +  + D      
Sbjct: 736 RFNKLTSLSDDFRATT 751

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 15  SESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL 74
            +++ +   +  S      E      + L+ L  + L         +P  L+ L +L +L
Sbjct: 462 YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSL 520

Query: 75  DLSHNNIKQIPDALENAKR 93
           +++ N          +  R
Sbjct: 521 NIACNRGISAAQLKADWTR 539

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 19  TIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLS 77
             G+        N + + +   +T    L  L +  N I    +   L     L  LD++
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI--RKVDEKL--TPQLYILDIA 835

Query: 78  HNNIKQIP 85
            N    I 
Sbjct: 836 DNPNISID 843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 39  ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTKATL 98
           +L     +  L+L     K   +P  +  L +L  L    ++         + + T    
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 99  DKR 101
           ++R
Sbjct: 377 EER 379

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 12/85 (14%), Positives = 30/85 (35%), Gaps = 19/85 (22%)

Query: 25  HLSIVNNNLEKLFGELTELQCLRTLNLRYNKI------------------KNSGIPVDLF 66
            +  + N +  +   +  L  L+ +    +                    +     +   
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWS 488

Query: 67  HLEDLTTLDLSHNN-IKQIPDALEN 90
           +L+DLT ++L +   + Q+PD L +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYD 513

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 24  EHLSIVNNNLEKLFGEL-TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L +  N +E++  +       +  L   +NK+K      +   +  + ++D S+N I 
Sbjct: 598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 83  QIPDAL 88
                +
Sbjct: 658 SEGRNI 663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 8/71 (11%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-----SGIPVDLFHLEDLTTLDLSH 78
               ++ + + +   E+  ++    ++L+  +I N     + I   +  L  L  +  ++
Sbjct: 399 NLSDLLQDAINRN-PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 79  NNIKQIPDALE 89
           +       A++
Sbjct: 458 SPFTYDNIAVD 468

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.2 bits (145), Expect = 2e-10
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIK 82
            HL + +N L  L   L  L+CL  L    N ++N  G+     +L  L  L L +N ++
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA----NLPRLQELLLCNNRLQ 521

Query: 83  QIPD 86
           Q   
Sbjct: 522 QSAA 525

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L   +N LE + G +  L  L+ L L  N+++ S     L     L  L+L  N++ Q
Sbjct: 489 EVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547

Query: 84  IPD 86
              
Sbjct: 548 EEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 4e-05
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 22  LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
                 + +  L +      E   +R L+L +  +    +   L  L  +T LDLSHN +
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRL 475

Query: 82  KQIPDALENAKR 93
           + +P AL   + 
Sbjct: 476 RALPPALAALRC 487

>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Length = 104

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNT 217
            RL++V           +    VPV  ES +    F+LD G  +  W G  +   
Sbjct: 3   QRLFQVKG------RRVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRY 51

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 6e-10
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L I NN L  L      +  L+ L+L +N + +  +  +    + L  L L HN+I  
Sbjct: 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT 332

Query: 84  IP 85
           + 
Sbjct: 333 LK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             + +  N LEK+ +    ++Q L  L +  N++    + +    +  L  LDLSHN++ 
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL 308

Query: 83  QIPDALENAKR 93
            +        R
Sbjct: 309 HVERNQPQFDR 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           + L +  N +  L       +  L  L L  N + +  +P  +F +   LTTL +S+NN+
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNL 153

Query: 82  KQIPD 86
           ++I D
Sbjct: 154 ERIED 158

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 5  EPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVD 64
          +P   C+ S  +   +    H+ +   ++   F ++T L   + +  + + ++   +P  
Sbjct: 7  QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRK--LPAA 63

Query: 65 LFH-LEDLTTLDLSHNNIKQIPD 86
          L      +  L+L+   I++I  
Sbjct: 64 LLDSFRQVELLNLNDLQIEEIDT 86

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
           E L++ +  +E++    F     +Q    L + +N I+   +P  +F ++  LT L L  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQ---KLYMGFNAIRY--LPPHVFQNVPLLTVLVLER 126

Query: 79  NNIKQIPDAL 88
           N++  +P  +
Sbjct: 127 NDLSSLPRGI 136

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
             L +  N+L  L    F    +L    TL++  N ++   I  D F     L  L LS 
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLT---TLSMSNNNLER--IEDDTFQATTSLQNLQLSS 174

Query: 79  NNIKQIPDAL 88
           N +  +  +L
Sbjct: 175 NRLTHVDLSL 184

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L   +N++  + G +     L  L L++N + ++     L +   L  +DLS+N +++
Sbjct: 208 EELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEK 262

Query: 84  IPD 86
           I  
Sbjct: 263 IMY 265

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
           + L + +N+L  +     +   L  L L +N I    + +   H   L  L LSHN+ 
Sbjct: 298 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--LKLSTHH--TLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           ++L + +N L  +  +L+ +  L   N+ YN +        L     +  LD SHN+I  
Sbjct: 168 QNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINV 219

Query: 84  IPDAL 88
           +   +
Sbjct: 220 VRGPV 224

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           + L +  N + K+       L  +  + L  N +K+SGI    F  ++ L+ + ++  NI
Sbjct: 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 82  KQIPDAL 88
             IP  L
Sbjct: 184 TTIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +  N + K+    L  L  L  L L +N I  S +      +   L  L L++N +
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI--SAVDNGSLANTPHLRELHLNNNKL 252

Query: 82  KQIPDALEN 90
            ++P  L +
Sbjct: 253 VKVPGGLAD 261

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           T  L + NN + ++  G+   L+ L TL L  NKI  S I    F  L  L  L LS N 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQ 111

Query: 81  IKQIPDAL 88
           +K++P+ +
Sbjct: 112 LKELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 6e-07
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L +  N++  +  G L     LR L+L  NK+    +P  L   + +  + L +NNI 
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNIS 276

Query: 83  QIPD 86
            I  
Sbjct: 277 AIGS 280

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-------HLEDLTTLDL 76
             L + NN L K+ G L + + ++ + L  N I    I  + F            + + L
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA--IGSNDFCPPGYNTKKASYSGVSL 300

Query: 77  SHNNIK 82
             N ++
Sbjct: 301 FSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 24  EHLSIVNNNLEKL-------FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLD 75
           + + + NNN+  +        G  T+      ++L  N ++   I    F  +     + 
Sbjct: 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

Query: 76  LSHN 79
           L + 
Sbjct: 326 LGNY 329

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 8e-10
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L + +  L +   +   L  L+ + +    +    +P  +     L TL L+ N ++ 
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRA 141

Query: 84  IPDALENAKRTKATLDKRACSAI 106
           +P ++ +  R +  L  RAC  +
Sbjct: 142 LPASIASLNRLR-ELSIRACPEL 163

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 20  IGLTEHLSIVNNNLEKLFGELTELQ--CLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLS 77
               +  +     L+     L +        L LR   +     P   F L  L  + + 
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTID 112

Query: 78  HNNIKQIPDALEN 90
              + ++PD ++ 
Sbjct: 113 AAGLMELPDTMQQ 125

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN-IK 82
           + L +    +  L   +  LQ L++L +R + +    +   + HL  L  LDL     ++
Sbjct: 186 QSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALR 243

Query: 83  QIPDALEN 90
             P     
Sbjct: 244 NYPPIFGG 251

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNK--------IKNSGIPVDLFHLEDLTTLD 75
           E L++  N L  L   +  L  LR L++R           + ++    +   L +L +L 
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 76  LSHNNIKQIPDALENAKR 93
           L    I+ +P ++ N + 
Sbjct: 190 LEWTGIRSLPASIANLQN 207

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 7/69 (10%), Positives = 16/69 (23%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           +     + N              +        +K +   ++         L+L    + Q
Sbjct: 36  QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ 95

Query: 84  IPDALENAK 92
            PD      
Sbjct: 96  FPDQAFRLS 104

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 9e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 30  NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL 88
            +NL  L  ++  L  L  L+LR      S +P  +  L     + +  +   Q+    
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 9e-10
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L I NN L  L      +  L+ L+L +N + +  +  +    + L  L L HN+I  
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVT 338

Query: 84  IP-DALEN 90
           +       
Sbjct: 339 LKLSTHHT 346

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             + +  N LEK+ +    ++Q L  L +  N++    + +    +  L  LDLSHN++ 
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL 314

Query: 83  QIPDALEN 90
            +      
Sbjct: 315 HVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           + L +  N +  L       +  L  L L  N + +  +P  +F +   LTTL +S+NN+
Sbjct: 102 QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNL 159

Query: 82  KQIPD 86
           ++I D
Sbjct: 160 ERIED 164

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
           E L++ +  +E++    F     +Q    L + +N I+   +P  +F ++  LT L L  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQ---KLYMGFNAIRY--LPPHVFQNVPLLTVLVLER 132

Query: 79  NNIKQIPDAL 88
           N++  +P  +
Sbjct: 133 NDLSSLPRGI 142

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 6e-07
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +  N+L  L  G       L TL++  N ++   I  D F     L  L LS N +
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER--IEDDTFQATTSLQNLQLSSNRL 183

Query: 82  KQIPDAL 88
             +  +L
Sbjct: 184 THVDLSL 190

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 5  EPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVD 64
          +P   C+ S  +   +    H+ +   ++   F ++T L   + +  + + ++   +P  
Sbjct: 13 QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRK--LPAA 69

Query: 65 LFH-LEDLTTLDLSHNNIKQIPD 86
          L      +  L+L+   I++I  
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDT 92

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L   +N++  + G +     L  L L++N + ++     L +   L  +DLS+N +++
Sbjct: 214 EELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA---WLLNYPGLVEVDLSYNELEK 268

Query: 84  IPD 86
           I  
Sbjct: 269 IMY 271

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
           + L + +N+L  +     +   L  L L +N I    + +   H   L  L LSHN+ 
Sbjct: 304 KVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--LKLSTHH--TLKNLTLSHNDW 357

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           ++L + +N L  +  +L+ +  L   N+ YN +        L     +  LD SHN+I  
Sbjct: 174 QNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST------LAIPIAVEELDASHNSINV 225

Query: 84  IPDAL 88
           +   +
Sbjct: 226 VRGPV 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
             L + +N L+ L  G   +L  L  L+L  N +   G           L  LDLS N 
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 81 IKQIPDALEN 90
          +  +      
Sbjct: 90 VITMSSNFLG 99

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 8/79 (10%)

Query: 21  GLT--EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLD 75
           GL+  E L +  N+ ++ F     TEL+ L  L+L   +++   +    F+ L  L  L+
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLN 205

Query: 76  LSHNNIKQIPD-ALENAKR 93
           +SHNN   +     +    
Sbjct: 206 MSHNNFFSLDTFPYKCLNS 224

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +    LE+L       L  L+ LN+ +N      +    +  L  L  LD S N+I
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHI 235

Query: 82  KQIP-DALENAKRTKATLD 99
                  L++   + A L+
Sbjct: 236 MTSKKQELQHFPSSLAFLN 254

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
            +L I + +    F G    L  L  L +  N  + + +P     L +LT LDLS   ++
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 83  QIPD 86
           Q+  
Sbjct: 189 QLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 24  EHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
             LS+ +N L               L+ L+L +N +    +  +   LE L  LD  H+N
Sbjct: 55  TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSN 112

Query: 81  IKQIPD 86
           +KQ+ +
Sbjct: 113 LKQMSE 118

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 24  EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           EHL   ++NL+++  F     L+ L  L++ +   +       +F  L  L  L ++ N+
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNS 161

Query: 81  IKQ--IPDALEN 90
            ++  +PD    
Sbjct: 162 FQENFLPDIFTE 173

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH--LEDLTTLDLSHNN 80
           + L++ +NN   L       L  L+ L+   N I                L  L+L+ N+
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT--SKKQELQHFPSSLAFLNLTQND 259

Query: 81  I 81
            
Sbjct: 260 F 260

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           E+L  V   L  L    + +L  L+ LN+ +N I +  +P    +L +L  +DLS+N I+
Sbjct: 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 83  QIPDA----LENAKRTKATLD 99
            I       L    +   +LD
Sbjct: 167 TITVNDLQFLRENPQVNLSLD 187

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +    LE++  G    L  L+ LN+ +N +    +    +  L  L+TLD S N I
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL--LFLDSSHYNQLYSLSTLDCSFNRI 533

Query: 82  KQIPDAL 88
           +     L
Sbjct: 534 ETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLS 77
          T+++ +  N L+ L    F   +ELQ    L+L   +I    I    +H L  L+ L L+
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQ---WLDLSRCEI--ETIEDKAWHGLHHLSNLILT 88

Query: 78 HNNIKQIPD 86
           N I+    
Sbjct: 89 GNPIQSFSP 97

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            HL +  N    +      L+ L+ L+ +++ +K          LE L  LD+S+ N K 
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

Query: 84  IPD 86
             D
Sbjct: 439 DFD 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
            +L I   N +  F G    L  L TL +  N  K++ +     +  +LT LDLS   ++
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 83  QIP 85
           QI 
Sbjct: 487 QIS 489

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
            +L +  N L       + +L     LR L+L +N      +  +   LE+L  LD  H+
Sbjct: 353 SYLDLSRNALSFSGCCSYSDLGTNS-LRHLDLSFNGA--IIMSANFMGLEELQHLDFQHS 409

Query: 80  NIKQIPD 86
            +K++ +
Sbjct: 410 TLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + LSI+   L++      +L  L++L L  NK     I      L  L+ LDLS N +  
Sbjct: 310 QSLSIIRCQLKQF--PTLDLPFLKSLTLTMNKGS---ISFKKVALPSLSYLDLSRNALSF 364

Query: 84  IPD 86
              
Sbjct: 365 SGC 367

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH---LEDLTTLDLSHNN 80
           + L++  N     F +   L  L  L+L  N +  S      +       L  LDLS N 
Sbjct: 331 KSLTLTMNKGSISF-KKVALPSLSYLDLSRNAL--SFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 81  IKQIPDALEN 90
              +      
Sbjct: 388 AIIMSANFMG 397

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 30  NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDA 87
             NLE      +  L  +     R     +    +  F  L +++ + L+  +IK + D 
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303

Query: 88  LENAKRTKATLDKRACSAIHAVNLRN 113
            ++ K    ++ +        ++L  
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPTLDLPF 329

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED-LTTLDLSHNNI 81
           + L++ +NNL  L      +L  L TL+  +N+I        L H    L   +L++N++
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI--ETSKGILQHFPKSLAFFNLTNNSV 557

Query: 82  KQIPDAL 88
             I +  
Sbjct: 558 ACICEHQ 564

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQ 83
              ++  L K+  ++      + ++L +N +    +    F +  +L  LDLS   I+ 
Sbjct: 15 TYQCMDQKLSKVPDDIPSS--TKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIET 70

Query: 84 IPD 86
          I D
Sbjct: 71 IED 73

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 9/63 (14%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             +S+   +++ L  ++ +    ++L++   ++K          L  L +L L+ N    
Sbjct: 288 SAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQ----FPTLDLPFLKSLTLTMNKGSI 342

Query: 84  IPD 86
              
Sbjct: 343 SFK 345

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNI 81
             + +  N   +L       +  L+ L LR   +KN       F  L +LT LDLS+NNI
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 82  KQIPDAL 88
             I D +
Sbjct: 493 ANINDDM 499

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 10/71 (14%)

Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
             L++ +N L +L    F   ++L    +L++ +N I  S +  +L   L  L  L+L 
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLT---SLDVGFNTI--SKLEPELCQKLPMLKVLNLQ 81

Query: 78 HNNIKQIPDAL 88
          HN + Q+ D  
Sbjct: 82 HNELSQLSDKT 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +++N+++K+      + + L TL+L +N +  S   +     LE+L  L LS+N I
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNNKI 157

Query: 82  KQIPD 86
           + +  
Sbjct: 158 QALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L++ +N  +++      +L  L+ ++L  N +  + +P  +F +   L +L+L  N I
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL--NTLPASVFNNQVSLKSLNLQKNLI 596

Query: 82  KQIP 85
             + 
Sbjct: 597 TSVE 600

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           + L++ +N L +L          L  L+L  N I    I  + F   ++L TLDLSHN +
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI--QKIKNNPFVKQKNLITLDLSHNGL 133

Query: 82  KQIPD 86
                
Sbjct: 134 SSTKL 138

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF---HLEDLTTLDLSHN 79
             L + +N L     G   +L+ L+ L L  NKI    +  +         L  L+LS N
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI--QALKSEELDIFANSSLKKLELSSN 181

Query: 80  NIKQI-PDALEN 90
            IK+  P     
Sbjct: 182 QIKEFSPGCFHA 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
            +LS+ N+ L       F  L     L  L+L YN +  + +  D F  L  L    L +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTN-LTMLDLSYNNL--NVVGNDSFAWLPQLEYFFLEY 281

Query: 79  NNIKQI-PDALENAKR 93
           NNI+ +   +L     
Sbjct: 282 NNIQHLFSHSLHGLFN 297

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFH---LEDLTTLDLSHN 79
           EHL++ +N++  +     T L  L+ L+L  +      +  + F       L  L+L+ N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 80  NIKQIPD 86
            I +I  
Sbjct: 392 KISKIES 398

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIK------NSGIPVDLF-HLEDLTTLD 75
             L + NNN+  +    L  L+ L  L+L++N +       N G P+     L  L  L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 76  LSHNNIKQIP 85
           L  N   +IP
Sbjct: 543 LESNGFDEIP 552

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
             L++  N + K+    F  L  L+ L   +L  N+I    +    +  LE++  + LS+
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVL---DLGLNEIGQE-LTGQEWRGLENIFEIYLSY 439

Query: 79  NNIKQIPD 86
           N   Q+  
Sbjct: 440 NKYLQLTR 447

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQC--LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
           + L + NN ++ L   EL       L+ L L  N+IK    P     +  L  L L++  
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-SPGCFHAIGRLFGLFLNNVQ 206

Query: 81  I 81
           +
Sbjct: 207 L 207

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSG--------IPVDLFHLEDLTTL 74
           E+  +  NN++ LF   L  L  +R LNL+ +  K S                L+ L  L
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 75  DLSHNNIKQIPD 86
           ++  N+I  I  
Sbjct: 335 NMEDNDIPGIKS 346

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF---HLEDLTTLDLSHN 79
           + L + +N +++   G    +  L  L L   ++  S +   L        +  L LS++
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS-LTEKLCLELANTSIRNLSLSNS 232

Query: 80  NIKQIPD 86
            +    +
Sbjct: 233 QLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI-PDAL 88
          +  L ++  +L     +  LNL +N+++      +      LT+LD+  N I ++ P+  
Sbjct: 13 HLKLTQVPDDL--PTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELC 69

Query: 89 EN 90
          + 
Sbjct: 70 QK 71

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH--LEDLTTLDLSHNN 80
           + + +  NNL  L          L++LNL+ N I  + +   +F     +LT LD+  N 
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI--TSVEKKVFGPAFRNLTELDMRFNP 620

Query: 81  IKQIPDALE 89
                +++ 
Sbjct: 621 FDCTCESIA 629

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L I +N + K+  G  + L+ +  + +  N ++NSG     F    L  L +S   + 
Sbjct: 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 83  QIPDAL 88
            IP  L
Sbjct: 186 GIPKDL 191

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L + +N ++ +   +L     L  L L +N+I+   I       L  L  L L +N +
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKL 253

Query: 82  KQIPDALEN 90
            ++P  L +
Sbjct: 254 SRVPAGLPD 262

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           T  L + NN++ +L   +   LQ L  L L  NKI  S I    F  L  L  L +S N+
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNH 113

Query: 81  IKQIPDAL 88
           + +IP  L
Sbjct: 114 LVEIPPNL 121

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L + +N +  +  G L+ L  LR L+L  NK+    +P  L  L+ L  + L  NNI 
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNIT 277

Query: 83  QIPD 86
           ++  
Sbjct: 278 KVGV 281

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 16/87 (18%)

Query: 2   VGFEPGTFCMASKSESVTIGLT-EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG 60
            GFEPG F           GL   +L I    L  +  +L   + L  L+L +NKI+   
Sbjct: 162 SGFEPGAFD----------GLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQA-- 207

Query: 61  IPVDLF-HLEDLTTLDLSHNNIKQIPD 86
           I ++       L  L L HN I+ I +
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIEN 234

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L +VNN + K+     + L+ L+ L +  N +    IP +L     L  L +  N I+
Sbjct: 81  YALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVELRIHDNRIR 136

Query: 83  QIPDAL 88
           ++P  +
Sbjct: 137 KVPKGV 142

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-------HLEDLTTLDL 76
             L + NN L ++   L +L+ L+ + L  N I    + V+ F              + L
Sbjct: 244 RELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK--VGVNDFCPVGFGVKRAYYNGISL 301

Query: 77  SHNNIK 82
            +N + 
Sbjct: 302 FNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 8/64 (12%)

Query: 24  EHLSIVNNNLEKL-------FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLD 75
           + + +  NN+ K+        G   +      ++L  N +    +    F  + D   + 
Sbjct: 267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326

Query: 76  LSHN 79
             + 
Sbjct: 327 FGNY 330

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L I  N    +       + +R LNL    I+   +   +     L  LD+S+NN+  
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV--VKTCIPQ--TLEVLDVSNNNLDS 445

Query: 84  IPDALEN 90
               L  
Sbjct: 446 FSLFLPR 452

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
           E L +  N + +              L+TL L  N +++     ++   L++LT+LD+S 
Sbjct: 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR 396

Query: 79  NNIKQIPDALEN 90
           N    +PD+ + 
Sbjct: 397 NTFHPMPDSCQW 408

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           + L +  N +  +  G+L     L+ L L+ ++I  + I  D F  L  L  LDLS N+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNH 85

Query: 81 IKQIPDAL 88
          +  +  + 
Sbjct: 86 LSSLSSSW 93

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
           + L + ++ +  +    F  L  L+    L+L  N + +  +    F  L  L  L+L  
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLE---HLDLSDNHLSS--LSSSWFGPLSSLKYLNLMG 107

Query: 79  NNIKQIPDA 87
           N  + +   
Sbjct: 108 NPYQTLGVT 116

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF--HLEDLTTLDLSHNN 80
           + +++ N+ +  +       L+ L  L+L  N +    +           L TL LS N+
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 81  IKQIPD 86
           ++ +  
Sbjct: 373 LRSMQK 378

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L + NNNL+     L  LQ    L +  NK+K   +P        L  + +S N +K 
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQ---ELYISRNKLKT--LPDASL-FPVLLVMKISRNQLKS 487

Query: 84  IPD 86
           +PD
Sbjct: 488 VPD 490

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L I    L        + L+ ++ + +  +K+    +P     HL+ L  LDLS N +
Sbjct: 289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL--VPCSFSQHLKSLEFLDLSENLM 346

Query: 82  KQIP 85
            +  
Sbjct: 347 VEEY 350

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 24  EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN-I 81
           EHL + +N+L  L       L  L+ LNL  N  +  G+     +L +L TL + +    
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 82  KQIPD 86
            +I  
Sbjct: 137 SEIRR 141

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 24  EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           + L I N          +   L  L  L ++   ++N          + D+  L L  + 
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN--YQSQSLKSIRDIHHLTLHLSE 183

Query: 81  IKQIPDALEN 90
              + +   +
Sbjct: 184 SAFLLEIFAD 193

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD 86
          + +   +   LT    +++L+L +NKI    I         +L  L L  + I  I  
Sbjct: 14 SRSFTSIPSGLTAA--MKSLDLSFNKITY--IGHGDLRACANLQVLILKSSRINTIEG 67

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 24  EHLSIVNNNLEKL--FGELTELQCLRTLNL-RYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
           ++L+++ N  + L        L  L+TL +        S I    F  L  L  L++   
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF--SEIRRIDFAGLTSLNELEIKAL 158

Query: 80  NIKQIPD 86
           +++    
Sbjct: 159 SLRNYQS 165

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 26  LSIVNNNLEKLFGELTELQC--LRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
           L   N +   +  EL +++   +R L++    +        ++  LE +  + + ++ + 
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FYDLSTVYSLLEKVKRITVENSKVF 323

Query: 83  QIPD 86
            +P 
Sbjct: 324 LVPC 327

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L I   +L       L  ++ +  L L  ++     +       L  +  L+L   N+
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF--LLEIFADILSSVRYLELRDTNL 208

Query: 82  KQIP 85
            +  
Sbjct: 209 ARFQ 212

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 16  ESVTIGLT--EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLT 72
           +S ++ L   + L I  N L+ L  + +    L  + +  N++K+  +P  +F  L  L 
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTL-PDASLFPVLLVMKISRNQLKS--VPDGIFDRLTSLQ 500

Query: 73  TLDLSHNNI 81
            + L  N  
Sbjct: 501 KIWLHTNPW 509

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 23  TEHLSIVNNNLEKLFGE--LTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
           T  L + +NNL +L  E   T L  L +L L +N +    I  + F  + +L  LDLS N
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYLDLSSN 98

Query: 80  NIKQIPD 86
           ++  + +
Sbjct: 99  HLHTLDE 105

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 15/76 (19%)

Query: 21  GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF----HLED 70
            L   E L + NN++  +    F ++ +LQ    L L  N+I     PV+L      L  
Sbjct: 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQ---KLYLSQNQISR--FPVELIKDGNKLPK 164

Query: 71  LTTLDLSHNNIKQIPD 86
           L  LDLS N +K++P 
Sbjct: 165 LMLLDLSSNKLKKLPL 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
            +L + +N+L  L     ++LQ L  L L  N I    +  + F  +  L  L LS N I
Sbjct: 91  RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV--VDRNAFEDMAQLQKLYLSQNQI 148

Query: 82  KQIPD 86
            + P 
Sbjct: 149 SRFPV 153

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 24  EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
           E L +  N+ ++ F     TEL+ L  L+L   ++    +    F+ L  L  L++SHNN
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNN 505

Query: 81  IKQ-IPDALENAKR 93
                    +    
Sbjct: 506 FFSLDTFPYKCLNS 519

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           ++L +  N +  +      L+ L  L+ +++ +K          L +L  LD+SH + + 
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 84  IPD 86
             +
Sbjct: 436 AFN 438

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           + L  V  NL  L    +  L+ L+ LN+ +N I++  +P    +L +L  LDLS N I+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 83  QI-PDALEN 90
            I    L  
Sbjct: 163 SIYCTDLRV 171

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +    LE+L       L  L+ LN+ +N      +    +  L  L  LD S N+I
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 82  K-QIPDALENAKRTKATLD 99
                  L++   + A L+
Sbjct: 531 MTSKKQELQHFPSSLAFLN 549

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
            +L I + +    F G    L  L  L +  N  + + +P     L +LT LDLS   ++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 83  QIP 85
           Q+ 
Sbjct: 484 QLS 486

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 25  HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNIKQ 83
            L+  +N     F E+ +L  L  L+L  N +   G      F    L  LDLS N +  
Sbjct: 329 RLTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 84  IPDALEN 90
           +      
Sbjct: 388 MSSNFLG 394

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
          T++L +  N L  L    F    ELQ    L+L   +I    I    +  L  L+TL L+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQ---VLDLSRCEI--QTIEDGAYQSLSHLSTLILT 84

Query: 78 HNNIKQI-PDALEN 90
           N I+ +   A   
Sbjct: 85 GNPIQSLALGAFSG 98

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 24  EHLSIVNNNLE--KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLT----TLDLS 77
           + L++ +N ++  KL    + L  L  L+L  NKI++     DL  L  +     +LDLS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLS 185

Query: 78  HNNIKQIPD 86
            N +  I  
Sbjct: 186 LNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 25  HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
           +L    +++  LF  LT +      +L    I    +  D  +      L+L +    Q 
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSF---SLVSVTI--ERVK-DFSYNFGWQHLELVNCKFGQF 319

Query: 85  PD 86
           P 
Sbjct: 320 PT 321

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLED-LTTLDLSHNNI 81
           + L++ +NN   L       L  L+ L+   N I  S    +L H    L  L+L+ N+ 
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 6   PGTFCMASKSESVTIGLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNS-GIPV 63
                  +  E   + L E  +    NLEK     L  L  L     R   +       +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRN--EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 275

Query: 64  DLFH-LEDLTTLDLSHNNIKQIPD 86
           DLF+ L ++++  L    I+++ D
Sbjct: 276 DLFNCLTNVSSFSLVSVTIERVKD 299

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 10 CMASKSESVTIGL---TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL 65
          C       +   L      + +  N ++ +  G  +  + LR ++L  N+I    +  D 
Sbjct: 18 CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--LAPDA 75

Query: 66 F-HLEDLTTLDLSHNNIKQIP 85
          F  L  L +L L  N I ++P
Sbjct: 76 FQGLRSLNSLVLYGNKITELP 96

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 21  GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTT 73
              +   + + NN + +L    F  L  L    +L L  NKI    +P  LF  L  L  
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQGLRSLN---SLVLYGNKITE--LPKSLFEGLFSLQL 108

Query: 74  LDLSHNNIKQIPD 86
           L L+ N I  +  
Sbjct: 109 LLLNANKINCLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 21  GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
           GL     L +  N + +L    F  L  LQ    L L  NKI    + VD F  L +L  
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQ---LLLLNANKINC--LRVDAFQDLHNLNL 132

Query: 74  LDLSHNNIKQIPD 86
           L L  N ++ I  
Sbjct: 133 LSLYDNKLQTIAK 145

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 16/82 (19%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN---------------SGIPVDLFHL 68
           E L    N+L +L      L+ L   N     + +                 +P +L + 
Sbjct: 94  ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNS 152

Query: 69  EDLTTLDLSHNNIKQIPDALEN 90
             L  +D+ +N++K++PD   +
Sbjct: 153 SFLKIIDVDNNSLKKLPDLPPS 174

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 6/67 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + + + NN+L+KL      L+    +    N+++   +P +L +L  LT +   +N++K+
Sbjct: 156 KIIDVDNNSLKKLPDLPPSLE---FIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLKK 209

Query: 84  IPDALEN 90
           +PD   +
Sbjct: 210 LPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             +   NN+L+KL      L+   ++    N ++      +L +L  LTT+   +N +K 
Sbjct: 198 TAIYADNNSLKKLPDLPLSLE---SIVAGNNILE---ELPELQNLPFLTTIYADNNLLKT 251

Query: 84  IPDALEN 90
           +PD   +
Sbjct: 252 LPDLPPS 258

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L+  +N +  L      L+    LN+  NK+    +P        L  L  S N++ +
Sbjct: 300 YYLNASSNEIRSLCDLPPSLE---ELNVSNNKLIE--LPA---LPPRLERLIASFNHLAE 351

Query: 84  IPDALEN 90
           +P+  +N
Sbjct: 352 VPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E +   NN LE+L  EL  L  L T+    N +K   +P        L  L++  N +  
Sbjct: 218 ESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKT--LP---DLPPSLEALNVRDNYLTD 271

Query: 84  IPDALEN 90
           +P+  ++
Sbjct: 272 LPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 21/83 (25%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED------------- 70
           E L    N+L ++       Q L+ L++ YN ++    P     +ED             
Sbjct: 340 ERLIASFNHLAEV---PELPQNLKQLHVEYNPLRE--FPDIPESVEDLRMNSHLAEVPEL 394

Query: 71  ---LTTLDLSHNNIKQIPDALEN 90
              L  L +  N +++ PD  E+
Sbjct: 395 PQNLKQLHVETNPLREFPDIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 19/81 (23%)

Query: 24  EHLSIVNNNLEKL----FGELTELQC----------LRTLNLRYNKIKNSGIPVDLFHLE 69
                  +  E+      GE  E+               L L    + +  +P    HLE
Sbjct: 37  TEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS--LPELPPHLE 94

Query: 70  DLTTLDLSHNNIKQIPDALEN 90
              +L  S N++ ++P+  ++
Sbjct: 95  ---SLVASCNSLTELPELPQS 112

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 8/73 (10%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLE------------DLTTLDLS 77
          ++NL ++  E   ++        +++ + +  P +    E                L+L+
Sbjct: 20 SSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELN 79

Query: 78 HNNIKQIPDALEN 90
          +  +  +P+   +
Sbjct: 80 NLGLSSLPELPPH 92

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L +  N    L      L     LN   N+I++  +      LE    L++S+N + +
Sbjct: 280 TFLDVSENIFSGLSELPPNL---YYLNASSNEIRS--LCDLPPSLE---ELNVSNNKLIE 331

Query: 84  IPDALEN 90
           +P     
Sbjct: 332 LPALPPR 338

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 15  SESVTIGLT--EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDL 71
             SV + L    +L I + +    F G    L  L  L +  N  + + +P     L +L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 72  TTLDLSHNNIKQIPD 86
           T LDLS   ++Q+  
Sbjct: 473 TFLDLSQCQLEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           + L  V  NL  L    +  L+ L+ LN+ +N I++  +P    +L +L  LDLS N I+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 83  QIP----DALENAKRTKATLD 99
            I       L        +LD
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLD 183

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 24  EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           E L +  N+ ++ F     TEL+ L  L+L   ++    +    F  L  L  L+++ N 
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMASNQ 505

Query: 81  IKQIPD 86
           +K +PD
Sbjct: 506 LKSVPD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
          T++L +  N L  L          L+ L+L   +I    I    +  L  L+TL L+ N 
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNP 87

Query: 81 IKQIPD 86
          I+ +  
Sbjct: 88 IQSLAL 93

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
           + L+  +N     F    +L  L  L+L  N +   G           L  LDLS N + 
Sbjct: 328 KRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 83  QIPDALENAKRTKATLD 99
            +       ++ +  LD
Sbjct: 387 TMSSNFLGLEQLE-HLD 402

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 12/63 (19%), Positives = 28/63 (44%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           ++L +  N +  +      L+ L  L+ +++ +K          L +L  LD+SH + + 
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 84  IPD 86
             +
Sbjct: 436 AFN 438

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 24  EHLSIVNNNLEKL---FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
           E L +  N L               L+ L+L +N +    +  +   LE L  LD  H+N
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSN 407

Query: 81  IKQIPDA 87
           +KQ+ + 
Sbjct: 408 LKQMSEF 414

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +  N ++ L  G  + L  L+ L      +  + +      HL+ L  L+++HN I
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLI 136

Query: 82  KQIPD 86
           +    
Sbjct: 137 QSFKL 141

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 24  EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +    LE+L       L  L+ LN+  N++K+  +P  +F  L  L  + L  N  
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           +HL +VN    +      +L+ L+ L    NK  N+        L  L  LDLS N +  
Sbjct: 307 QHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSF 361

Query: 84  IP 85
             
Sbjct: 362 KG 363

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E LS +N  L  +   L +L  L+ L L  N++   G+ V      +LT L+LS N IK 
Sbjct: 45  EFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKD 102

Query: 84  IPD 86
           +  
Sbjct: 103 LST 105

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 24  EHLSIVNNNLEKLFGELTE-LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           + L + +N +      L E    L  LNL  NKIK+      L  LE+L +LDL +  + 
Sbjct: 67  KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

Query: 83  QIPD 86
            + D
Sbjct: 127 NLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQI 84
          L    +N  KL G   E + L  L+     + + + +P     L  L  L+LS N +   
Sbjct: 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGG 79

Query: 85 PDAL 88
           + L
Sbjct: 80 LEVL 83

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
          T  L +  N ++ L   E      L  L L  N +    +    F +L +L TL L  N 
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSNR 91

Query: 81 IKQIPDAL 88
          +K IP  +
Sbjct: 92 LKLIPLGV 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           E L +  N +  +  G    L  LRTL LR N++K   IP+ +F  L +LT LD+S N I
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKLDISENKI 116

Query: 82  KQIPDAL 88
             + D +
Sbjct: 117 VILLDYM 123

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNI 81
             LSI + NL  + +  +  L  LR LNL YN I    I   + H L  L  + L    +
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQL 284

Query: 82  KQIP-DALEN 90
             +   A   
Sbjct: 285 AVVEPYAFRG 294

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L I  N +  L      +L  L++L +  N +    I    F  L  L  L L   N+
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNL 164

Query: 82  KQIPD 86
             IP 
Sbjct: 165 TSIPT 169

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNN-LEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           + L I +   L+ +         L +L++ +  +    +P     HL  L  L+LS+N I
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPI 260

Query: 82  KQIPD 86
             I  
Sbjct: 261 STIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
           + L + +N+L  +    F  L  L+    L L    +  + IP +   HL  L  L L H
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLE---QLTLEKCNL--TSIPTEALSHLHGLIVLRLRH 185

Query: 79  NNIKQIPD 86
            NI  I D
Sbjct: 186 LNINAIRD 193

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L + + N+  +       L  L+ L + +       +  +  +  +LT+L ++H N+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLT 237

Query: 83  QIPD 86
            +P 
Sbjct: 238 AVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
             L++  N +  +      EL  LQ    + L   ++    +    F  L  L  L++S 
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQ---EIQLVGGQLAV--VEPYAFRGLNYLRVLNVSG 305

Query: 79  NNIKQIP 85
           N +  + 
Sbjct: 306 NQLTTLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNI 81
           + + +V   L  +       L  LR LN+  N++    +   +FH + +L TL L  N +
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT--LEESVFHSVGNLETLILDSNPL 332

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           EHL++  N +  + G++     L+TL+L  NK+  + +  +      +T + L +N +  
Sbjct: 172 EHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 84  IPDALEN 90
           I  AL  
Sbjct: 229 IEKALRF 235

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 24 EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
          +   + +++L++           ++ L+L  N +  S I          L  L+LS N +
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVL 70

Query: 82 KQIPD 86
           +  D
Sbjct: 71 YETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
          + L +  N L ++   +L     L  LNL  N +       DL  L  L TLDL++N ++
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETL-DLESLSTLRTLDLNNNYVQ 93

Query: 83 QIP 85
          ++ 
Sbjct: 94 ELL 96

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           +++ + NN +  L   +      ++ L+L+ N+I            + L  L+L +N I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 83  QIPD 86
            +  
Sbjct: 183 DVKG 186

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L++ +N L +   +L  L  LRTL+L  N ++      +L     + TL  ++NNI +
Sbjct: 61  ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISR 113

Query: 84  IP 85
           + 
Sbjct: 114 VS 115

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK 82
           E L   NNN+ ++    +  Q  + + L  NKI  + +          +  LDL  N I 
Sbjct: 102 ETLHAANNNISRV--SCSRGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 83  QIPDA 87
            +  A
Sbjct: 158 TVNFA 162

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPD 86
              +   +  + +        L     ++  LDLS N + QI  
Sbjct: 9  GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISA 51

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 4e-08
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           EHL++  N +  + G++     L+TL+L  NK+  + +  +      +T + L +N +  
Sbjct: 172 EHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKL--AFMGPEFQSAAGVTWISLRNNKLVL 228

Query: 84  IPDALEN 90
           I  AL  
Sbjct: 229 IEKALRF 235

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           +   + +++L++           ++ L+L  N +  S I          L  L+LS N 
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNV 69

Query: 81 IKQIPD 86
          + +  D
Sbjct: 70 LYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
          + L +  N L ++   +L     L  LNL  N +       DL  L  L TLDL++N ++
Sbjct: 37 KELDLSGNPLSQISAADLAPFTKLELLNLSSNVL--YETL-DLESLSTLRTLDLNNNYVQ 93

Query: 83 QIP 85
          ++ 
Sbjct: 94 ELL 96

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           +++ + NN +  L   +      ++ L+L+ N+I            + L  L+L +N I 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 83  QIPDAL 88
            +   +
Sbjct: 183 DVKGQV 188

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L + NN ++    EL     + TL+   N I  S +       +    + L++N I  
Sbjct: 83  RTLDLNNNYVQ----ELLVGPSIETLHAANNNI--SRVSCSRG--QGKKNIYLANNKITM 134

Query: 84  IPD 86
           + D
Sbjct: 135 LRD 137

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L++ +N L +   +L  L  LRTL+L  N ++      +L     + TL  ++NNI +
Sbjct: 61  ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNISR 113

Query: 84  IPDAL 88
           +  + 
Sbjct: 114 VSCSR 118

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)

Query: 43 LQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPD 86
              +   +  + +        L     ++  LDLS N + QI  
Sbjct: 9  GNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQISA 51

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 1/79 (1%)

Query: 22  LTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
           L  + +    +L       L  L+      L     +   +  +  +      +D     
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 81  IKQIPDALENAKRTKATLD 99
            + + D +   K+ K TL+
Sbjct: 348 YRTVIDQVTLRKQAKITLE 366

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIK 82
             LS   +  E+L  E       R ++    + +   +   +    +   TL+     + 
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRT--VIDQVTLRKQAKITLEQKKKALD 373

Query: 83  QIPDALENA 91
           +       A
Sbjct: 374 EQVSNGRRA 382

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E LS++N  L  +   L +L  L+ L L  N+I   G+ +    L +LT L+LS N +K 
Sbjct: 52  EFLSLINVGLISVSN-LPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKD 109

Query: 84  IPD 86
           I  
Sbjct: 110 IST 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQI 84
          L    +N  K+ G   E   L  L+L    + + S +P     L  L  L+LS N I   
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSENRIFGG 86

Query: 85 PDALENA 91
           D L   
Sbjct: 87 LDMLAEK 93

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
           E +++  +    +    F   + LQ L   +L    +  S +P  L  L  L  L LS N
Sbjct: 257 ESINLQKHYFFNISSNTFHCFSGLQEL---DLTATHL--SELPSGLVGLSTLKKLVLSAN 311

Query: 80  NIKQIPD 86
             + +  
Sbjct: 312 KFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
              +  + + E +    F  L E+  + ++NL+ +      I  + FH    L  LDL+ 
Sbjct: 231 WLGTFEDMDDEDISPAVFEGLCEMS-VESINLQKHYF--FNISSNTFHCFSGLQELDLTA 287

Query: 79  NNIKQIPDALEN 90
            ++ ++P  L  
Sbjct: 288 THLSELPSGLVG 299

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           TE L    N L  +     + L  L  L+L   +I    I  D F     L TL L+ N 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANP 92

Query: 81  IKQIPDAL 88
           +  + +  
Sbjct: 93  LIFMAETA 100

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 24  EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           E L +    L+          L  L+ LNL ++ +        LF  L  L  L+L  N+
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL--DISSEQLFDGLPALQHLNLQGNH 460

Query: 81  IKQIPDALENA 91
             +      N+
Sbjct: 461 FPKGNIQKTNS 471

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           + L +  N  E L     +    L  L+++ N  +       L +LE+L  LDLSH++I+
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 83  QIP 85
              
Sbjct: 364 TSD 366

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           +HL  +   +  + F  L   + L +L L  N I  S I +      E L  LD  +N I
Sbjct: 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHI--SSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 82  KQIPD 86
             +  
Sbjct: 166 HYLSK 170

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
           +HL++  N+  K        L  L  L  L L +  +  S I    F  L+ +  +DLSH
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL--SSIDQHAFTSLKMMNHVDLSH 509

Query: 79  NNIKQIP 85
           N +    
Sbjct: 510 NRLTSSS 516

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           + L++  N    L      E   L  L+L + ++K         +L  L  L+LSH+ + 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 83  QIPDAL 88
              + L
Sbjct: 439 ISSEQL 444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 24  EHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
            HLSI  N        G L  L+ LR L+L ++ I+ S         L  L +L+LS+N 
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 81  IKQIP 85
              + 
Sbjct: 388 PLSLK 392

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLT--TLDLSHN 79
           E L + +N++  +   +    + L+ L+ + N I    +  +    L+  T  +L+L+ N
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI--HYLSKEDMSSLQQATNLSLNLNGN 189

Query: 80  NIKQIPDALENAKR 93
           +I  I     ++  
Sbjct: 190 DIAGIEPGAFDSAV 203

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           + L +  N L  +    L+  + L+ L      I  S I      + + L +L L  N+I
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGI--SSIDFIPLHNQKTLESLYLGSNHI 141

Query: 82  KQIPD 86
             I  
Sbjct: 142 SSIKL 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           E L +   +L  +     T L+ +  ++L +N++  +   ++         L+L+ N+I 
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHLKGIYLNLASNHIS 536

Query: 83  QIP 85
            I 
Sbjct: 537 IIL 539

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
          + +  +  N  L ++ G L        L   +N +    I    F  L +LT LDL+   
Sbjct: 13 VNKTYNCENLGLNEIPGTLPNS--TECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQ 68

Query: 81 IKQIPD 86
          I  I +
Sbjct: 69 IYWIHE 74

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
           + L   NN +  L       L +   L +LNL  N I  +GI    F      +L+    
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDI--AGIEPGAFDSAVFQSLNFGGT 212

Query: 80  NI-KQIPDALENAK 92
                I   L+N+ 
Sbjct: 213 QNLLVIFKGLKNST 226

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L I +NNL  L     EL   RTL +  N++ +  +PV    L +L+       ++  
Sbjct: 64  TTLVIPDNNLTSLPALPPEL---RTLEVSGNQLTS--LPVLPPGLLELSIFSNPLTHLPA 118

Query: 84  IPDALEN 90
           +P  L  
Sbjct: 119 LPSGLCK 125

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 10/67 (14%), Positives = 16/67 (23%), Gaps = 8/67 (11%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L +  N L  L      L  L   +     +              L  L +  N +  
Sbjct: 84  RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLTS 135

Query: 84  IPDALEN 90
           +P     
Sbjct: 136 LPVLPPG 142

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + L +  N L  L    +EL   + L +  N++ +  +P+       L +L +  N + +
Sbjct: 224 KELIVSGNRLTSLPVLPSEL---KELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTR 275

Query: 84  IPDALEN 90
           +P++L +
Sbjct: 276 LPESLIH 282

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + LS+ +N L  L    +EL     L    N++ +  +P+    L     L +S N +  
Sbjct: 144 QELSVSDNQLASLPALPSELC---KLWAYNNQLTS--LPMLPSGL---QELSVSDNQLAS 195

Query: 84  IPDALEN 90
           +P     
Sbjct: 196 LPTLPSE 202

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L I  N L  L      LQ    L++  N++  + +P        L  L   +N +  
Sbjct: 124 CKLWIFGNQLTSLPVLPPGLQ---ELSVSDNQL--ASLPALPSE---LCKLWAYNNQLTS 175

Query: 84  IPDALEN 90
           +P     
Sbjct: 176 LPMLPSG 182

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 22/84 (26%)

Query: 24  EHLSIVNNNLEKL---FGELTELQC--------------LRTLNLRYNKIKNSGIPVDLF 66
           + LS+ +N L  L     EL +L                L+ L +  N++  + +PV   
Sbjct: 184 QELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL--TSLPV--- 238

Query: 67  HLEDLTTLDLSHNNIKQIPDALEN 90
              +L  L +S N +  +P     
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSG 262

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 30 NNNLEKLFGELTELQC--LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA 87
          +     +  ++          LN+  + +    +P  L     +TTL +  NN+  +P  
Sbjct: 24 SRGRAAVVQKMRACLNNGNAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLTSLPAL 79

Query: 88 LEN 90
             
Sbjct: 80 PPE 82

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 21  GLT--EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
           GL+   +L++   NL ++   LT L  L  L+L  N +    I    F  L  L  L + 
Sbjct: 183 GLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSA--IRPGSFQGLMHLQKLWMI 239

Query: 78  HNNIKQIP 85
            + I+ I 
Sbjct: 240 QSQIQVIE 247

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
           T  L++  N ++ +       L+ L  L L  N I+   I +  F+ L +L TL+L  N 
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT--IEIGAFNGLANLNTLELFDNR 123

Query: 81  IKQIPD 86
           +  IP+
Sbjct: 124 LTTIPN 129

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           E L +  N++  +  G    L  L TL L  N++  + IP   F +L  L  L L +N I
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPI 148

Query: 82  KQIPD 86
           + IP 
Sbjct: 149 ESIPS 153

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNL-RYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
           + L + NN +E +       +  LR L+L    ++    I    F  L +L  L+L+  N
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--ISEGAFEGLSNLRYLNLAMCN 196

Query: 81  IKQIPD 86
           +++IP+
Sbjct: 197 LREIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           + L +  N+L  +  G    L  L+ L +  ++I+   I  + F +L+ L  ++L+HNN+
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNL 267

Query: 82  KQIP 85
             +P
Sbjct: 268 TLLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 30  NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
              L  +  G    L  LR LNL    ++   IP +L  L  L  LDLS N++  I  
Sbjct: 170 LKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLSAIRP 224

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
           + L ++ + ++ +       LQ L  +NL +N +    +P DLF  L  L  + L HN
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL--LPHDLFTPLHHLERIHLHHN 289

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 21  GLT--EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
           GL   ++L++   N++ +   LT L  L  L +  N      I    F  L  L  L + 
Sbjct: 194 GLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPE--IRPGSFHGLSSLKKLWVM 250

Query: 78  HNNIKQI-PDALEN 90
           ++ +  I  +A + 
Sbjct: 251 NSQVSLIERNAFDG 264

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
           T +L+++ NN++ +       L  L  L L  N I+   I V  F+ L  L TL+L  N 
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ--IEVGAFNGLASLNTLELFDNW 134

Query: 81  IKQIPD 86
           +  IP 
Sbjct: 135 LTVIPS 140

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
           E L +  N+  ++    F  L+ L+    L +  +++    I  + F  L  L  L+L+H
Sbjct: 221 EELEMSGNHFPEIRPGSFHGLSSLK---KLWVMNSQVSL--IERNAFDGLASLVELNLAH 275

Query: 79  NNIKQIP 85
           NN+  +P
Sbjct: 276 NNLSSLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNL-RYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
             L + NN +E +       +  L  L+L    K++   I    F  L +L  L+L   N
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY--ISEGAFEGLFNLKYLNLGMCN 207

Query: 81  IKQIPD 86
           IK +P+
Sbjct: 208 IKDMPN 213

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 30  NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
              LE +  G    L  L+ LNL    IK+  +P +L  L  L  L++S N+  +I  
Sbjct: 181 LKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFPEIRP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
           + L ++N+ +  +       L  L  LNL +N + +  +P DLF  L  L  L L HN
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS--LPHDLFTPLRYLVELHLHHN 300

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
             L +  N   +L    F  L  L+    L L    +  + +  + F  L  L  L L  
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLE---VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 79  NNIKQIP 85
           NNIK+I 
Sbjct: 139 NNIKKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 23  TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLS 77
            E L++  N + K+    F  LT L     LNL  N + +  I   +F  L+ L  LDLS
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLL---KLNLSQNFLGS--IDSRMFENLDKLEVLDLS 355

Query: 78  HNNIKQIPD 86
           +N+I+ + D
Sbjct: 356 YNHIRALGD 364

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.0 bits (117), Expect = 6e-07
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
            ++ +  N++ +L    F  L +LQ    L +         I  + F  L  L  L L 
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQ---FLKVEQQTPGLV-IRNNTFRGLSSLIILKLD 87

Query: 78 HNNIKQIPD 86
          +N   Q+  
Sbjct: 88 YNQFLQLET 96

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 21  GLT--EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDL 76
           GLT    L++  N L  +       L  L  L+L YN I+   +    F  L +L  L L
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA--LGDQSFLGLPNLKELAL 378

Query: 77  SHNNIKQIPD 86
             N +K +PD
Sbjct: 379 DTNQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 21  GLT--EHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTL 74
           GL   E L++   NL+           L  L  L LR N IK    P   F ++     L
Sbjct: 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVL 159

Query: 75  DLSHNNIKQIPD 86
           DL+ N +K I +
Sbjct: 160 DLTFNKVKSICE 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 27  SIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           S  + N +      F  L     ++T +L  +KI    +   +F H  DL  L L+ N I
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASG-VKTCDLSKSKIFA--LLKSVFSHFTDLEQLTLAQNEI 311

Query: 82  KQIPD 86
            +I D
Sbjct: 312 NKIDD 316

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +    L++L  G    L  L+ L L+ N ++   +P D F  L +LT L L  N I
Sbjct: 108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNRI 165

Query: 82  KQIPD 86
             +P+
Sbjct: 166 SSVPE 170

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 21  GLT--EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDL 76
           GL   ++L + +N L+ L      +L  L  L L  N+I +  +P   F  L  L  L L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLL 184

Query: 77  SHNNIKQIPD 86
             N +  +  
Sbjct: 185 HQNRVAHVHP 194

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
            HL +  N +  +    F  L  L     L L  N++ +  +    F  L  L TL L  
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSL---DRLLLHQNRVAH--VHPHAFRDLGRLMTLYLFA 210

Query: 79  NNIKQIPD 86
           NN+  +P 
Sbjct: 211 NNLSALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 30  NNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDA 87
           N  L  +       L  L TL+L    ++   +   LF  L  L  L L  N ++ +PD 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 88  L 88
            
Sbjct: 148 T 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
          ++ + +  N +  +        + L  L L  N +  + I    F  L  L  LDLS N 
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNA 91

Query: 81 -IKQIPD 86
           ++ +  
Sbjct: 92 QLRSVDP 98

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 21  GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
           GL   + L +  N +  +    F +L  L    TL L  N +    +P +    L  L  
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLM---TLYLFANNLSA--LPTEALAPLRALQY 229

Query: 74  LDLSHN 79
           L L+ N
Sbjct: 230 LRLNDN 235

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 21  GLT--EHLSIVNNNLEKL----FGELTELQCLR-TLNLRYNKIKNSGIPVDLFHLEDLTT 73
            LT  EHL + +N ++ +       L ++  L  +L+L  N +    I    F    L  
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKE 204

Query: 74  LDLSHNNIKQIPD 86
           L L  N +K +PD
Sbjct: 205 LALDTNQLKSVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 15/90 (16%)

Query: 21  GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
           GL+  + L  V  NL  L     G L  L+    LN+ +N I++  +P + F +L +L  
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLK---ELNVAHNLIQSFKLP-EYFSNLTNLEH 153

Query: 74  LDLSHNNIKQIP----DALENAKRTKATLD 99
           LDLS N I+ I       L        +LD
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSH 78
           + L +    ++ +    +  L+ L    TL L  N I++  + +  F  L  L  L    
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLS---TLILTGNPIQS--LALGAFSGLSSLQKLVAVE 109

Query: 79  NNIKQIPD 86
            N+  + +
Sbjct: 110 TNLASLEN 117

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +  N ++ L  G  + L  L+ L      + +  +      HL+ L  L+++HN I
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLI 136

Query: 82  KQIPDA 87
           +     
Sbjct: 137 QSFKLP 142

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPD 86
           + L+L +N +++  +    F    +L  LDLS   I+ I D
Sbjct: 30 TKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIED 69

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
          TE L +  N +  +       L+ L+ L L       + I  + F  L +L  LDL  + 
Sbjct: 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSK 84

Query: 81 IKQIPD 86
          I  +  
Sbjct: 85 IYFLHP 90

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 24  EHLSIVNNNLEKLFGE---LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
             L +    L     +      L+ L  L+L  N+I++  +      L  L ++D S N 
Sbjct: 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 81  IKQIPD 86
           I  + +
Sbjct: 160 IFLVCE 165

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 24  EHLSIVNNNLEKLFGE-LTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
           + L++  N L +L+      L  +  ++L+ N I  + I    F  LE L TLDL  N +
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI--AIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 82  KQIPD 86
             I  
Sbjct: 375 TTIHF 379

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 24  EHLSIVNNNLEKLFGE--LTELQCLRTLNLRYNKIK---NSGIPVDLF-HLEDLTTLDLS 77
           + L +  N      G+   +E   L  L L  N ++    + +  D+F  L  L  L L+
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 78  HNNIKQIPD 86
           HN +  +P 
Sbjct: 489 HNYLNSLPP 497

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 10/68 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
            HL + +  +  L    F  L +L+ L   NL YNKI  + I  + F  L++L  L+LS+
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVL---NLAYNKI--NKIADEAFYGLDNLQVLNLSY 323

Query: 79  NNIKQIPD 86
           N + ++  
Sbjct: 324 NLLGELYS 331

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           + L + +N L  L  G  + L  LR L+L  N++    +  +     +L  LD+S N + 
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--LSHNDL-PANLEILDISRNQLL 539

Query: 83  QI-PDALENAKRTKATLDKRACSAIHAVNLRNFL 115
              PD   +      T +K  C         N+L
Sbjct: 540 APNPDVFVSLSVLDITHNKFICE-CELSTFINWL 572

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 24  EHLSIVNNNLEKLF------GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDL 76
           E L +  N L+  +           L  L+ L L +N + +  +P  +F  L  L  L L
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS--LPPGVFSHLTALRGLSL 511

Query: 77  SHNNIKQIPD 86
           + N +  +  
Sbjct: 512 NSNRLTVLSH 521

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 8/68 (11%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
                  +N++      F  L     +R L+L +  + +  +   +F  L+DL  L+L++
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSS-VRHLDLSHGFVFS--LNSRVFETLKDLKVLNLAY 299

Query: 79  NNIKQIPD 86
           N I +I D
Sbjct: 300 NKINKIAD 307

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQI--PD 86
            NL ++   L   +    L L +N I+   +    F  LE L  L+L           +
Sbjct: 13 FCNLTQVPQVLNTTE---RLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 87 ALEN 90
          A  N
Sbjct: 68 AFRN 71

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             + +  N L  L            ++L  N+++N  I   L  +  L  L L+ N    
Sbjct: 384 PDIFLSGNKLVTLP---KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440

Query: 84  IPD 86
              
Sbjct: 441 CSG 443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 24  EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
             + +  N LE L     L  +  L+ L L  N+  +            L  L L  N +
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 82  KQIPD 86
           +   +
Sbjct: 464 QLAWE 468

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
            + L + NN +  +   +L     L+ L L  N I    I  D F  L  L  LDLS+N 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLSYNY 111

Query: 81  IKQIP 85
           +  + 
Sbjct: 112 LSNLS 116

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
           + L + +N +  +    F  L  L+    L+L YN + N  +    F  L  LT L+L  
Sbjct: 79  QALVLTSNGINTIEEDSFSSLGSLE---HLDLSYNYLSN--LSSSWFKPLSSLTFLNLLG 133

Query: 79  NNIKQIPDA 87
           N  K + + 
Sbjct: 134 NPYKTLGET 142

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 25  HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
              +   +  +L       L +    R + +    +    +   L  +  L  L+ S N 
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQ 288

Query: 81  IKQIPD 86
           +K +PD
Sbjct: 289 LKSVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
            ++ I + +L ++   L ++  L  L    N++K+  +P  +F  L  L  + L  N 
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 34  EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD 86
            K F  LT L+    L +  + +++          +++++ L L       + +
Sbjct: 167 RKDFAGLTFLE---ELEIDASDLQS--YEPKSLKSIQNVSHLILHMKQHILLLE 215

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIK 82
             LS+  N ++K+         L  L + YN+I + SGI      L +L  L +S+N I 
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIE----KLVNLRVLYMSNNKIT 128

Query: 83  QIPD 86
              +
Sbjct: 129 NWGE 132

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 25 HLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQ 83
           L  +   +EK+   L+ L+  + L L  N I+  S +      +E+L  L L  N IK+
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS----GMENLRILSLGRNLIKK 84

Query: 84 I 84
          I
Sbjct: 85 I 85

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L I  N +  L G + +L  LR L +  NKI N G    L  L+ L  L L+ N +  
Sbjct: 96  EELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 84  IPDALEN 90
                  
Sbjct: 155 DYKENNA 161

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 34 EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
          E+     TE + +  L+     I+   +   L  L+    L LS NNI++I
Sbjct: 16 ERKSVVATEAEKVE-LHGMIPPIEK--MDATLSTLKACKHLALSTNNIEKI 63

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
          T  L+I  N + +L   ++  L  LR L + +N+I    + + +F   ++L  LDLSHN 
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNK 80

Query: 81 IKQIP-DALEN 90
          + +I      N
Sbjct: 81 LVKISCHPTVN 91

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L++ +N L    F  L     ++ L+L  NKIK+  IP  +  LE L  L+++ N +K
Sbjct: 402 LSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLK 457

Query: 83  QIPD 86
            +PD
Sbjct: 458 SVPD 461

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 23  TEHLSIVNNNLEKL------FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDL 76
            E L +  N L++L        ++  LQ    L++  N +       D    + L +L++
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQ---QLDISQNSVSYDEKKGDCSWTKSLLSLNM 406

Query: 77  SHNNIKQIP 85
           S N +    
Sbjct: 407 SSNILTDTI 415

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           E+L + +N L K+       L+    L+L +N      I  +  ++  L  L LS  +++
Sbjct: 72  EYLDLSHNKLVKISCHPTVNLK---HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 83  QIP 85
           +  
Sbjct: 129 KSS 131

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
             HL   NN L    F     L  L TL L+ N++K      ++   ++ L  LD+S N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385

Query: 81  IKQIP 85
           +    
Sbjct: 386 VSYDE 390

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 25  HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
            L I +N ++ L    F    EL+    L+L +NK+    I        +L  LDLS N 
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELE---YLDLSHNKLVK--ISCH--PTVNLKHLDLSFNA 101

Query: 81  IKQIPDA 87
              +P  
Sbjct: 102 FDALPIC 108

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
           + L+I N +       ++ L  L  L +    + +  IP +L  L  LT LD+SH+  
Sbjct: 69  KDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAH 124

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 24  EHLSIVNNNL-EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           E L I+  ++       L+ L  L  L++ ++   +S +   +  L  + ++DLS+N   
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAI 149

Query: 83  QIPDALEN 90
                L+ 
Sbjct: 150 TDIMPLKT 157

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 3/58 (5%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
             + +  N        L  L  L++LN++++ + +      +     L  L      I
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTI 193

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + +   +N + KL G    L+ L+TL +  N+I           L DLT L L++N++ +
Sbjct: 45  DAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVE 102

Query: 84  IPD 86
           + D
Sbjct: 103 LGD 105

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIK 82
            L +    +  +      L     ++   N+I+   G P     L  L TL +++N I 
Sbjct: 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRIC 77

Query: 83 QIPDALE 89
          +I + L+
Sbjct: 78 RIGEGLD 84

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 24  EHLSIVNNNLEKLFGELTE-LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           + L + NN + ++   L + L  L  L L  N +   G    L  L+ LT L +  N + 
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Query: 83  QIPD 86
               
Sbjct: 127 NKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQI 84
          + +    +E+     T     R L+LR  KI     +   L   +    +D S N I+++
Sbjct: 2  VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFD---AIDFSDNEIRKL 57

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 4e-07
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
           T+ LS+  N++ +L   +++ L  LR L L +N+I++  +   +F   +DL  LD+SHN 
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDVSHNR 111

Query: 81  IKQIP-DALEN 90
           ++ I    + +
Sbjct: 112 LQNISCCPMAS 122

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 23  TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
              L++ +N L    F  L     ++ L+L  N+I +  IP D+ HL+ L  L+++ N +
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQL 485

Query: 82  KQIPD 86
           K +PD
Sbjct: 486 KSVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           E+L + +N L+ +    +  L+    L+L +N      +  +  +L  LT L LS    +
Sbjct: 103 EYLDVSHNRLQNISCCPMASLR---HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 83  QIP 85
           Q+ 
Sbjct: 160 QLD 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 11/67 (16%)

Query: 25  HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
            L + +N +  L    F    +L+    L++ +N+++N  I      +  L  LDLS N+
Sbjct: 80  VLRLSHNRIRSLDFHVFLFNQDLE---YLDVSHNRLQN--ISCC--PMASLRHLDLSFND 132

Query: 81  IKQIPDA 87
              +P  
Sbjct: 133 FDVLPVC 139

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L +  N L  +   LT L+ L  L L  NKIK+  +   L  L+ L +L L HN I  
Sbjct: 68  TKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISD 123

Query: 84  IPDALEN 90
           I + L +
Sbjct: 124 I-NGLVH 129

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + LS+ +N +  + G L  L  L +L L  NKI +      L  L  L TL L  N I  
Sbjct: 112 KSLSLEHNGISDING-LVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISD 167

Query: 84  IPD 86
           I  
Sbjct: 168 IVP 170

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L + NN +  +   L+ L  L TL+L  N+I +  I   L  L  L  L LS N+I  
Sbjct: 134 ESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISD--IV-PLAGLTKLQNLYLSKNHISD 189

Query: 84  IPDALENAKR 93
           +  AL   K 
Sbjct: 190 L-RALAGLKN 198

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
               V+  ++++F            NL+   + +    V    L  +  +  ++++IK 
Sbjct: 2  GETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKS 57

Query: 84 I 84
          +
Sbjct: 58 V 58

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIK 82
             ++   ++        EL  +  +    + IK+  GI     +L ++T L L+ N + 
Sbjct: 24 IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQGIQ----YLPNVTKLFLNGNKLT 78

Query: 83 QIP 85
           I 
Sbjct: 79 DIK 81

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + LS+ +N +  +   L  L  L+ L L  N I +  +   L  L++L  L+L       
Sbjct: 156 DTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLN 211

Query: 84  IP 85
            P
Sbjct: 212 KP 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L I  N +  +   L  L  LR L L  + I  S I   L +L  + +L+L  N+   
Sbjct: 91  TNLYIGTNKITDI-SALQNLTNLRELYLNEDNI--SDIS-PLANLTKMYSLNLGANHNLS 146

Query: 84  IPDALEN 90
               L N
Sbjct: 147 DLSPLSN 153

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + L++ +N +  +   L  L  L +L L  N++ N      +  L +LTTL LS N+I  
Sbjct: 268 KMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITD 325

Query: 84  IP 85
           I 
Sbjct: 326 IR 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
          G    L+ +   + ++F    +L       L+   + +    V    LE +T L ++   
Sbjct: 1  GAAT-LATLPAPINQIF-PDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEK 55

Query: 81 IKQIPD 86
          +  I  
Sbjct: 56 VASIQG 61

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L++  + ++ +   +  L  L +L+L YN+I    I   L  L  L       N I  
Sbjct: 158 NYLTVTESKVKDV-TPIANLTDLYSLSLNYNQI--EDIS-PLASLTSLHYFTAYVNQITD 213

Query: 84  IP 85
           I 
Sbjct: 214 IT 215

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E+L++  N +  +   L+ L  L  L +  NKI +      L +L +L  L L+ +NI  
Sbjct: 69  EYLNLNGNQITDI-SPLSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISD 124

Query: 84  IP 85
           I 
Sbjct: 125 IS 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L++  N+       L+ +  L  L +  +K+    +   + +L DL +L L++N I+ 
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV--KDVT-PIANLTDLYSLSLNYNQIED 191

Query: 84  IP 85
           I 
Sbjct: 192 IS 193

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 5e-06
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            + +   N +  +   +  +  L +L +  NKI  + +   L +L  LT L++  N I  
Sbjct: 202 HYFTAYVNQITDI-TPVANMTRLNSLKIGNNKI--TDLS-PLANLSQLTWLEIGTNQISD 257

Query: 84  IPDALEN 90
           I  A+++
Sbjct: 258 IN-AVKD 263

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 8e-06
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L I NN +  L   L  L  L  L +  N+I  S I   +  L  L  L++  N I  
Sbjct: 224 NSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI--SDINA-VKDLTKLKMLNVGSNQISD 279

Query: 84  IP 85
           I 
Sbjct: 280 IS 281

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
              +   ++  +     EL+ +  L +   K+ +  I   + +L +L  L+L+ N I  
Sbjct: 25 IRAVLQKASVTDV-VTQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD 80

Query: 84 IP 85
          I 
Sbjct: 81 IS 82

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 24  EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
             L +    +  +     LT L+    LNL  N+I  + I   L +L  LT L +  N I
Sbjct: 47  TKLVVAGEKVASIQGIEYLTNLE---YLNLNGNQI--TDIS-PLSNLVKLTNLYIGTNKI 100

Query: 82  KQIP 85
             I 
Sbjct: 101 TDIS 104

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 24  EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
             L + NN L       +  L  L TL L  N I  + I   L  L  + + D ++  IK
Sbjct: 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI--TDIR-PLASLSKMDSADFANQVIK 346

Query: 83  Q 83
           +
Sbjct: 347 K 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + LS+  N L+ + G L  L  L  L+L  N+I  S +   L  L  LT L L  N I  
Sbjct: 224 DELSLNGNQLKDI-GTLASLTNLTDLDLANNQI--SNLA-PLSGLTKLTELKLGANQISN 279

Query: 84  IPD 86
           I  
Sbjct: 280 ISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L   NN +  +   L  L  L  L+L  N++K+      L  L +LT LDL++N I  
Sbjct: 202 ESLIATNNQISDITP-LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISN 257

Query: 84  IPD 86
           +  
Sbjct: 258 LAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             + + NN +  +   L  L  L  L L  N+I  + I   L +L +L  L+LS N I  
Sbjct: 93  VDILMNNNQIADIT-PLANLTNLTGLTLFNNQI--TDID-PLKNLTNLNRLELSSNTISD 148

Query: 84  IP 85
           I 
Sbjct: 149 IS 150

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L++  NN+  +   ++ L  L+ L    NK+ +      L +L ++  L   HN I  
Sbjct: 312 TYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISD 367

Query: 84  IP 85
           + 
Sbjct: 368 LT 369

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L      ++ + G +  L  L  +N   N++  + I   L +L  L  + +++N I  
Sbjct: 49  TTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL--TDIT-PLKNLTKLVDILMNNNQIAD 104

Query: 84  IPD 86
           I  
Sbjct: 105 ITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L + NN +  L   L+ L  L  L L  N+I  S I   L  L  LT L+L+ N ++ 
Sbjct: 246 TDLDLANNQISNLAP-LSGLTKLTELKLGANQI--SNIS-PLAGLTALTNLELNENQLED 301

Query: 84  IP 85
           I 
Sbjct: 302 IS 303

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L +  N LE +   ++ L+ L  L L +N I  S I   +  L  L  L   +N +  
Sbjct: 290 TNLELNENQLEDI-SPISNLKNLTYLTLYFNNI--SDIS-PVSSLTKLQRLFFYNNKVSD 345

Query: 84  IP 85
           + 
Sbjct: 346 VS 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
              +   N+       T+L  + TL      IK+      + +L +LT ++ S+N +  
Sbjct: 27 MKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTD 82

Query: 84 IP 85
          I 
Sbjct: 83 IT 84

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + L   NN +  +   L  L  +  L+  +N+I  S +   L +L  +T L L+      
Sbjct: 334 QRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI--SDLT-PLANLTRITQLGLNDQAWTN 389

Query: 84  IP 85
            P
Sbjct: 390 AP 391

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 30  NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
            N +  L   L  L  L  L++  NK+ +      L  L +L +L  ++N I  I 
Sbjct: 164 GNQVTDLK-PLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDIT 215

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)

Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
          +  + ++F   T L       L    + +    V    L+ +TTL      IK I 
Sbjct: 11 DTPINQIFT-DTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSID 62

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L++ NN +  +   L  L  L  L L  N I +      L  L  L  L   +     
Sbjct: 115 TGLTLFNNQITDID-PLKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGNQVTDL 170

Query: 84  IP 85
            P
Sbjct: 171 KP 172

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 24  EHLSIVNNNLEKLFGE----LTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
           + L++ N  +E   G           L+ L+L +N ++++           L +L+LS  
Sbjct: 204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 80  NIKQIPDAL 88
            +KQ+P  L
Sbjct: 264 GLKQVPKGL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 24  EHLSIVNNNLEKLFGELT--ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
           + L + +N+L    G  +      L +LNL +  +    +P  L     L+ LDLS+N +
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQVPKGLPA--KLSVLDLSYNRL 286

Query: 82  KQIPDALE 89
            + P   E
Sbjct: 287 DRNPSPDE 294

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNS---GIPVDLF-HLEDLTTLDLSHN 79
             L++ N +       L ELQ      L+   I  +       +       L+TLDLS N
Sbjct: 124 NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 80  NI 81
             
Sbjct: 184 PE 185

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
             L++    L+++   L     L  L+L YN++     P     L  +  L L  N  
Sbjct: 256 NSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRL--DRNPSPD-ELPQVGNLSLKGNPF 308

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 23 TEHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
          T  L + NN    L   G   +L  LR +N   NKI +  I    F     +  + L+ N
Sbjct: 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--IEEGAFEGASGVNEILLTSN 91

Query: 80 NIKQIP 85
           ++ + 
Sbjct: 92 RLENVQ 97

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
             ++  NN +  +    F   + +     + L  N+++N  +   +F  LE L TL L  
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVN---EILLTSNRLEN--VQHKMFKGLESLKTLMLRS 114

Query: 79  NNIKQIPD 86
           N I  + +
Sbjct: 115 NRITCVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 18/87 (20%)

Query: 5   EPGTFCMASKSESVTIGLTEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSG 60
           E G F  AS        + E + + +N LE +    F  L  L+   TL LR N+I    
Sbjct: 73  EEGAFEGASG-------VNE-ILLTSNRLENVQHKMFKGLESLK---TLMLRSNRITC-- 119

Query: 61  IPVDLF-HLEDLTTLDLSHNNIKQIPD 86
           +  D F  L  +  L L  N I  +  
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAP 146

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 30  NNNLEKLFG----ELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNIK-Q 83
            N L    G    E+  +  L  LNL +N I  SG IP ++  L  L  LDLS N +  +
Sbjct: 641 YNMLS---GYIPKEIGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLDGR 695

Query: 84  IPDALEN 90
           IP A+  
Sbjct: 696 IPQAMSA 702

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 24  EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNI 81
             L +  N LE ++  EL  ++ L TL L +N +  +G IP  L +  +L  + LS+N +
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--TGEIPSGLSNCTNLNWISLSNNRL 502

Query: 82  K-QIPDALEN 90
             +IP  +  
Sbjct: 503 TGEIPKWIGR 512

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 24  EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNI 81
             L +  N L   +   L  L  LR L L  N +   G IP +L +++ L TL L  N++
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML--EGEIPQELMYVKTLETLILDFNDL 478

Query: 82  K-QIPDALEN 90
             +IP  L N
Sbjct: 479 TGEIPSGLSN 488

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK- 82
           E L + +NN       L +   L+ L++  NK+ +      +    +L  L++S N    
Sbjct: 203 EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVG 261

Query: 83  QIPDAL 88
            IP   
Sbjct: 262 PIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 24  EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNI 81
              +I +                +  L++ YN +  SG IP ++  +  L  L+L HN+I
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML--SGYIPKEIGSMPYLFILNLGHNDI 668

Query: 82  K-QIPDALEN 90
              IPD + +
Sbjct: 669 SGSIPDEVGD 678

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 11/73 (15%)

Query: 24  EHLSIVNNNLE----KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSH 78
             +S+ NN L     K  G L  L     L L  N    SG IP +L     L  LDL+ 
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLA---ILKLSNNSF--SGNIPAELGDCRSLIWLDLNT 547

Query: 79  NNIK-QIPDALEN 90
           N     IP A+  
Sbjct: 548 NLFNGTIPAAMFK 560

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 24  EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSG-IPVD-LFHLEDLTTLDLSHNN 80
             L +  N+    +         L +L L  N    SG +P+D L  +  L  LDLS N 
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF--SGELPMDTLLKMRGLKVLDLSFNE 354

Query: 81  IK-QIPDALEN 90
              ++P++L N
Sbjct: 355 FSGELPESLTN 365

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 24  EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
           ++LS+  N       + L G    L     L+L  N      +P        L +L LS 
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLT---GLDLSGNHF-YGAVPPFFGSCSLLESLALSS 327

Query: 79  NNI 81
           NN 
Sbjct: 328 NNF 330

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 24  EHLSIVNNNLE-KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK 82
           +HL I  N L       ++    L+ LN+  N+     IP     L+ L  L L+ N   
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQF-VGPIP--PLPLKSLQYLSLAENKFT 282

Query: 83  -QIPDALEN 90
            +IPD L  
Sbjct: 283 GEIPDFLSG 291

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 13/79 (16%)

Query: 24  EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHL-EDLTTLDL 76
           E L++ +NN           ++  L+    L+L +N+   SG +P  L +L   L TLDL
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLK---VLDLSFNEF--SGELPESLTNLSASLLTLDL 375

Query: 77  SHNNIK-QIPDALENAKRT 94
           S NN    I   L    + 
Sbjct: 376 SSNNFSGPILPNLCQNPKN 394

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 24  EHLSIVNNNLE-KLFGEL--TELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHN 79
             L + +NN    +   L       L+ L L+ N    +G IP  L +  +L +L LS N
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF--TGKIPPTLSNCSELVSLHLSFN 428

Query: 80  NIK-QIPDALEN 90
            +   IP +L +
Sbjct: 429 YLSGTIPSSLGS 440

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 24  EHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
             L +  N+L         L     L+ LN+  N +   G       L  L  LDLS N+
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 81  I-KQIPDAL 88
           I        
Sbjct: 163 ISGANVVGW 171

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 7/74 (9%), Positives = 18/74 (24%), Gaps = 2/74 (2%)

Query: 19  TIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLS 77
            +         N    K +  +      +  +   N ++  G     L  L      +++
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 78  HNNIK-QIPDALEN 90
                       +N
Sbjct: 617 SRVYGGHTSPTFDN 630

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIP--VDLFHLEDLTTLDLSHNNI 81
           E L + N+++            L +L+L  N + +  +     L     L  L++S N +
Sbjct: 80  ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTL 138

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 24 EHLSIVNNN-LEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
            L I N   L+ L       L EL   R L +  + ++   +  D F     L+ L+LS
Sbjct: 34 TELYIENQQHLQHLELRDLRGLGEL---RNLTIVKSGLRF--VAPDAFHFTPRLSRLNLS 88

Query: 78 HNNIKQIP 85
           N ++ + 
Sbjct: 89 FNALESLS 96

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L + NN L      L  L+ L  L++R NK+K+  I   L  L  L  LDL  N I  
Sbjct: 109 SRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITN 164

Query: 84  IPD 86
              
Sbjct: 165 TGG 167

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           ++ +  N+N++ L G +     L+ L+L +N+I +  +   L  L  L  L ++ N +K 
Sbjct: 44  QNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISD--LS-PLKDLTKLEELSVNRNRLKN 99

Query: 84  IP 85
           + 
Sbjct: 100 LN 101

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             ++   ++  L     EL  ++  N   + I++  +   +    +L  L LSHN I  
Sbjct: 22 VKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD 77

Query: 84 IPDALEN 90
          +   L++
Sbjct: 78 L-SPLKD 83

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E LS+  N L+ L        CL  L L  N++++      L HL++L  L + +N +K 
Sbjct: 88  EELSVNRNRLKNL--NGIPSACLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKS 142

Query: 84  IPD 86
           I  
Sbjct: 143 IVM 145

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E LSI NN L+ +   L  L  L  L+L  N+I N+G    L  L+ +  +DL+      
Sbjct: 131 EILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKCVN 186

Query: 84  IP 85
            P
Sbjct: 187 EP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 30 NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI 84
             + ++F     L      NL    + +    V    L  +   +  ++NI+ +
Sbjct: 6  PTPINQVFP-DPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQSL 56

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L+   NN+ KL  +L +   L  L+   NK+      +D+  L  LT  D S N + +
Sbjct: 194 NRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE----IDVTPLTQLTYFDCSVNPLTE 247

Query: 84  IPD 86
           +  
Sbjct: 248 LDV 250

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L   N+++  + G + +L  L  L    N I      +DL    +LT L    N +  
Sbjct: 45  TSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITT----LDLSQNTNLTYLACDSNKLTN 99

Query: 84  IP 85
           + 
Sbjct: 100 LD 101

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L      + +L  +L++   L  L L   ++      +D+ H   L +L   + +I+ 
Sbjct: 300 YLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTE----LDVSHNTKLKSLSCVNAHIQD 353

Query: 84  IP 85
             
Sbjct: 354 FS 355

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L+  +N L  L  ++T L  L  LN   NK+      +D+     LT L+ + N + +
Sbjct: 88  TYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTK----LDVSQNPLLTYLNCARNTLTE 141

Query: 84  IP 85
           I 
Sbjct: 142 ID 143

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L   +N L ++  ++T L  L   +   N +      +D+  L  LTTL     ++ +
Sbjct: 215 TFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLTE----LDVSTLSKLTTLHCIQTDLLE 268

Query: 84  IP 85
           I 
Sbjct: 269 ID 270

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L    N       ++T    L TL+  +NKI      +D+   + L  L+   NNI +
Sbjct: 151 TELDCHLNKKITK-LDVTPQTQLTTLDCSFNKITE----LDVSQNKLLNRLNCDTNNITK 205

Query: 84  IP 85
           + 
Sbjct: 206 LD 207

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L+   N L ++  +++    L  L+   NK       +D+     LTTLD S N I +
Sbjct: 130 TYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITK---LDVTPQTQLTTLDCSFNKITE 184

Query: 84  IP 85
           + 
Sbjct: 185 LD 186

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L+   N L KL  ++++   L  LN   N +      +D+ H   LT LD   N    
Sbjct: 109 TYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLTE----IDVSHNTQLTELDCHLNKKIT 162

Query: 84  IPDALENAK 92
             D     +
Sbjct: 163 KLDVTPQTQ 171

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +         K   ++T    L  L+ +   I      +DL     L  L L++  + +
Sbjct: 278 IYFQAEGCRKIK-ELDVTHNTQLYLLDCQAAGITE----LDLSQNPKLVYLYLNNTELTE 332

Query: 84  IP 85
           + 
Sbjct: 333 LD 334

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 9/142 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L + N  L +L  +++    L++L+     I++      +  +  L     +      
Sbjct: 321 VYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQD--FS-SVGKIPALNNNFEAEGQTIT 375

Query: 84  IPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISY 143
           +P            +           N  N    +     +     + E LS  N  ++Y
Sbjct: 376 MPKETLTNNSLTIAVSPDLLDQFG--NPMNIEPGDGGVYDQATNTITWENLSTDNPAVTY 433

Query: 144 --IEGGRTASGFFTVEDTVYTT 163
                     G  T        
Sbjct: 434 TFTSENGAIVGTVTTPFEAPQP 455

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
           +      + +     +L  L +L+   + I +  +   +  L  LT L  + NNI  + 
Sbjct: 26 AAFEMQATDTI--SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTLD 80

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 22/84 (26%)

Query: 24  EHLSIVNNNLEKL---FGELTELQC--------------LRTLNLRYNKIKNSGIPVDLF 66
           E+L   +N L  L      L  L                L  +N   N++    +P    
Sbjct: 103 EYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM--LPELPT 160

Query: 67  HLEDLTTLDLSHNNIKQIPDALEN 90
            LE    L + +N +  +P+  E+
Sbjct: 161 SLE---VLSVRNNQLTFLPELPES 181

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 7e-06
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTT----LDLSHN 79
           E LS+ NN L  L      L+    L++  N +++  +P                    N
Sbjct: 163 EVLSVRNNQLTFLPELPESLE---ALDVSTNLLES--LPAVPVRNHHSEETEIFFRCREN 217

Query: 80  NIKQIPDALENAKR 93
            I  IP+ + +   
Sbjct: 218 RITHIPENILSLDP 231

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 20  IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
             L E+++  NN L  L         L  L++R N++  + +P +L   E L  LD+S N
Sbjct: 139 PALLEYINADNNQLTML---PELPTSLEVLSVRNNQL--TFLP-EL--PESLEALDVSTN 190

Query: 80  NIKQIPDALEN 90
            ++ +P     
Sbjct: 191 LLESLPAVPVR 201

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L +   NL  L   L     +  L +  N + +  +P        L  LD   N +  
Sbjct: 62  SELQLNRLNLSSLPDNL--PPQITVLEITQNALIS--LPELP---ASLEYLDACDNRLST 114

Query: 84  IPDALENAKR 93
           +P+   + K 
Sbjct: 115 LPELPASLKH 124

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 13/87 (14%)

Query: 21  GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
           GL E   L +  N L+ L         +L+    L+L  N +  + +P  L   LE+L T
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLE---KLSLANNNL--TELPAGLLNGLENLDT 176

Query: 74  LDLSHNNIKQIPD-ALENAKRTKATLD 99
           L L  N++  IP     +     A L 
Sbjct: 177 LLLQENSLYTIPKGFFGSHLLPFAFLH 203

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
          T  L +  N L       L     L  LNL   ++    + VD   L  L TLDLSHN +
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQL 89

Query: 82 KQIPDALEN 90
          + +P   + 
Sbjct: 90 QSLPLLGQT 98

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 24  EHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
             L++    L KL   G L  L    TL+L +N++++  +P+    L  LT LD+S N +
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLG---TLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRL 112

Query: 82  KQIP 85
             +P
Sbjct: 113 TSLP 116

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
           E LS+ NNNL +L       L  L    TL L+ N +    IP   F    L    L  N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLD---TLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L +  N L+ +   +  LQ ++TL+L   +I +  +   L  L +L  L L  N I  
Sbjct: 88  TELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITD--VT-PLAGLSNLQVLYLDLNQITN 143

Query: 84  IP 85
           I 
Sbjct: 144 IS 145

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + L +  N +  +   L  L  L+ L++   ++ +  +   L +L  LTTL    N I  
Sbjct: 132 QVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSD--LT-PLANLSKLTTLKADDNKISD 187

Query: 84  IPD 86
           I  
Sbjct: 188 ISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 9e-06
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             LS     +  + G +  L  L  L L+ N+I +  +   L +L  +T L+LS N +K 
Sbjct: 44  TTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITD--LA-PLKNLTKITELELSGNPLKN 99

Query: 84  IP 85
           + 
Sbjct: 100 VS 101

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           ++LSI N  +  L   L  L  L TL    NKI +  I   L  L +L  + L +N I  
Sbjct: 154 QYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD--IS-PLASLPNLIEVHLKNNQISD 209

Query: 84  IP 85
           + 
Sbjct: 210 VS 211

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L   +N +  +   L  L  L  ++L+ N+I +  +   L +  +L  + L++  I  
Sbjct: 176 TTLKADDNKISDI-SPLASLPNLIEVHLKNNQISD--VSP-LANTSNLFIVTLTNQTITN 231

Query: 84  IP 85
            P
Sbjct: 232 QP 233

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + LS+ +N +  + G L  L  L +L L  NKI +  I V L  L  L TL L  N I  
Sbjct: 115 KSLSLEHNGISDING-LVHLPQLESLYLGNNKITD--ITV-LSRLTKLDTLSLEDNQISD 170

Query: 84  IPD 86
           I  
Sbjct: 171 IVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             L +  N L  +   L  L+ L  L L  NK+K+      L  L+ L +L L HN I  
Sbjct: 71  TKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL---SSLKDLKKLKSLSLEHNGISD 126

Query: 84  IPDALEN 90
           I + L +
Sbjct: 127 I-NGLVH 132

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           + LS+ +N +  +   L  L  L+ L L  N I +  +   L  L++L  L+L       
Sbjct: 159 DTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQECLN 214

Query: 84  IPD 86
            P 
Sbjct: 215 KPI 217

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 24 EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
             ++   ++        EL  +  +    + IK+  +   + +L ++T L L+ N +  
Sbjct: 27 IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTD 82

Query: 84 IPD 86
          I  
Sbjct: 83 IKP 85

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
          L      V   ++++F            NL+   + +    V    L  +  +  ++++I
Sbjct: 3  LGSETITVPTPIKQIFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDI 58

Query: 82 KQIP 85
          K + 
Sbjct: 59 KSVQ 62

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 12/73 (16%)

Query: 21  GLT--EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
            LT    L + +N L+ L    F EL  L+   TL +  NK++   +P+ +F  L +L  
Sbjct: 59  RLTKLRLLYLNDNKLQTLPAGIFKELKNLE---TLWVTDNKLQA--LPIGVFDQLVNLAE 113

Query: 74  LDLSHNNIKQIPD 86
           L L  N +K +P 
Sbjct: 114 LRLDRNQLKSLPP 126

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)

Query: 21  GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTT 73
            LT+  +LS+  N L+ L    F +LT L+    L L  N++K   +P   F  L +L T
Sbjct: 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLK---ELRLYNNQLKR--VPEGAFDKLTELKT 185

Query: 74  LDLSHNNIKQIPD 86
           L L +N +K++P+
Sbjct: 186 LKLDNNQLKRVPE 198

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNI 81
             L +  N    +  EL+  + L  ++L  N+I    +    F ++  L TL LS+N +
Sbjct: 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYNRL 90

Query: 82 KQIPD 86
          + IP 
Sbjct: 91 RCIPP 95

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 10/66 (15%)

Query: 26  LSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN 80
           + + NN +  L    F  +T+L    TL L YN+++   IP   F  L+ L  L L  N+
Sbjct: 59  IDLSNNRISTLSNQSFSNMTQLL---TLILSYNRLRC--IPPRTFDGLKSLRLLSLHGND 113

Query: 81  IKQIPD 86
           I  +P+
Sbjct: 114 ISVVPE 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 6e-06
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 23 TEHLSIVNNNLEKL-----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDL 76
          T  L + +N L ++     FG L  L     L L+ N++    I  + F     +  L L
Sbjct: 31 TTELLLNDNELGRISSDGLFGRLPHLV---KLELKRNQLTG--IEPNAFEGASHIQELQL 85

Query: 77 SHNNIKQIPD 86
            N IK+I +
Sbjct: 86 GENKIKEISN 95

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 24  EHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSH 78
             L +  N L  +    F   + +Q    L L  NKIK   I   +F  L  L TL+L  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQ---ELQLGENKIKE--ISNKMFLGLHQLKTLNLYD 111

Query: 79  NNIKQIPD 86
           N I  +  
Sbjct: 112 NQISCVMP 119

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 10/69 (14%)

Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
          T+ L + +N + KL    F  LT+L     L+L  N++    +P  +F  L  LT L L+
Sbjct: 32 TQVLYLYDNQITKLEPGVFDRLTQLT---RLDLDNNQLTV--LPAGVFDKLTQLTQLSLN 86

Query: 78 HNNIKQIPD 86
           N +K IP 
Sbjct: 87 DNQLKSIPR 95

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 24  EHLSIVNNNLEKLFG----ELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSH 78
            +L I + N+    G     L++++ L TL+  YN +  SG +P  +  L +L  +    
Sbjct: 104 HYLYITHTNVS---GAIPDFLSQIKTLVTLDFSYNAL--SGTLPPSISSLPNLVGITFDG 158

Query: 79  NNIK-QIPDALEN 90
           N I   IPD+  +
Sbjct: 159 NRISGAIPDSYGS 171

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLDLSHNNIK 82
           + + +  N+L    G++   + L  L+LR N+I   G +P  L  L+ L +L++S NN+ 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI--YGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 83  -QIP 85
            +IP
Sbjct: 282 GEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 12/71 (16%)

Query: 21  GLTEHLSIVNNNLE----KLFGELTELQCLRTLNLRYNKIKNSG-IPVDLFHLEDLTTLD 75
            L   ++I  N L       F  L     L  ++L  N +   G   V     ++   + 
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLN----LAFVDLSRNML--EGDASVLFGSDKNTQKIH 227

Query: 76  LSHNNIK-QIP 85
           L+ N++   + 
Sbjct: 228 LAKNSLAFDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.4 bits (93), Expect = 7e-04
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 25  HLSIVNNNLE---KLFGELTELQCLRTLNLR-YNKIKNSG-IPVDLFHLEDLTTLDLSHN 79
           +L +   NL     +   L  L  L  L +   N +   G IP  +  L  L  L ++H 
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--VGPIPPAIAKLTQLHYLYITHT 111

Query: 80  NIK-QIPDALENAKR 93
           N+   IPD L   K 
Sbjct: 112 NVSGAIPDFLSQIKT 126

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
           + L + NN + KL    F  L  LQ    L    NK+    IP  +F  L  LT LDL+
Sbjct: 35 KQRLWLNNNQITKLEPGVFDHLVNLQ---QLYFNSNKLTA--IPTGVFDKLTQLTQLDLN 89

Query: 78 HNNIKQIPD 86
           N++K IP 
Sbjct: 90 DNHLKSIPR 98

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
             L + +N L+ L    F +LT+L     L+L  N+I++  +P  +F  L  LT L L 
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLT---KLSLSQNQIQS--LPDGVFDKLTKLTILYLH 84

Query: 78 HNNIKQIPD 86
           N ++ +P+
Sbjct: 85 ENKLQSLPN 93

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)

Query: 21  GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
            LT+   LS+  N ++ L    F +LT+L     L L  NK+++  +P  +F  L  L  
Sbjct: 50  KLTQLTKLSLSQNQIQSLPDGVFDKLTKLT---ILYLHENKLQS--LPNGVFDKLTQLKE 104

Query: 74  LDLSHNNIKQIPD 86
           L L  N +K +PD
Sbjct: 105 LALDTNQLKSVPD 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 34/205 (16%), Positives = 69/205 (33%), Gaps = 48/205 (23%)

Query: 16  ESVTIGLTEH-LSIVNNNLEKLFGE--LTELQCLRTLNLRYNKIKNSGIPVDLF-----H 67
            S  I      LS++  ++ K      + +L    +L  +  K     IP  ++      
Sbjct: 383 PSAHI--PTILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIP-SIYLELKVK 438

Query: 68  LEDLTTLDLSHNNIK---QIPDALENAKRTKATLDKRACSAI--HAVNLRNFLAAECRTI 122
           LE+   L   H +I     IP   ++       LD+   S I  H  N+           
Sbjct: 439 LENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI----------- 484

Query: 123 REEQGDESEEFLSLFNTGISYIEG-----GRTASGFFTVEDTVYTTRLYRVH----APLH 173
             E  +    F  +F     ++E          +   ++ +T+   + Y+ +     P +
Sbjct: 485 --EHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 174 QAQASSI-----HLEPVPVLSESLD 193
           +   ++I      +E   + S+  D
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTD 566

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 23 TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
             L  V   L  +    F    +L+    + +  N +    I  D+F +L  L  + + 
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLE---KIEISQNDVL-EVIEADVFSNLPKLHEIRIE 87

Query: 78 H-NNIKQIPD 86
            NN+  I  
Sbjct: 88 KANNLLYINP 97

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 22  LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN 79
            +  L +  N ++++        Q         N ++   +P D+F        LD+S  
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRT 212

Query: 80  NIKQIPDAL 88
            I  +P   
Sbjct: 213 RIHSLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 24  EHLSIVNNN-LEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
           E + I  N+ LE +    F  L +L  +R      N +    I  + F +L +L  L +S
Sbjct: 57  EKIEISQNDVLEVIEADVFSNLPKLHEIRIEK--ANNLLY--INPEAFQNLPNLQYLLIS 112

Query: 78  HNNIKQIPD 86
           +  IK +PD
Sbjct: 113 NTGIKHLPD 121

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIKQIPDA 87
             L     K++   I    F    DL  +++S N++ ++ +A
Sbjct: 32 AIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEA 72

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 24  EHLSIVN-NNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
             + I   NNL  +       L  L+ L +    IK+  +P     H      LD+  N 
Sbjct: 82  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH--LPDVHKIHSLQKVLLDIQDNI 139

Query: 81  -IKQIPD 86
            I  I  
Sbjct: 140 NIHTIER 146

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 164 RLYRVHAPLHQA---------QASSIHLEPVPVL--SESLDPRFVFLLDAGLKLFIWNGP 212
            +Y +H    +A         +A+   + P P+   S   +   ++L+D G +LF+W G 
Sbjct: 755 DVYSLHDMADEAGLPVQTEDGEATGTIVLPQPINATSSLFERYGLYLIDNGNELFLWMGG 814

Query: 213 KAKNTFVFLL 222
            A    VF +
Sbjct: 815 DAVPALVFDV 824

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)

Query: 21  GLTE--HLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTT 73
            LT+   L +  N L+ L    F  LT+L+    L L  N++++  IP   F  L +L T
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLK---ELRLNTNQLQS--IPAGAFDKLTNLQT 159

Query: 74  LDLSHNNIKQIPD 86
           L LS N ++ +P 
Sbjct: 160 LSLSTNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN 80
          TE L + +  L  L       L  L  LNL YN++    +   +F  L +L TL L++N 
Sbjct: 37 TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQ 94

Query: 81 IKQIP 85
          +  +P
Sbjct: 95 LASLP 99

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 23  TEHLSIVNNNLEKL--FGELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHN 79
             +L++  N L  +    ELT L     L L  N++    +P  +F  L +L  L L  N
Sbjct: 65  VRYLALGGNKLHDISALKELTNLT---YLILTGNQL--QSLPNGVFDKLTNLKELVLVEN 119

Query: 80  NIKQIP 85
            ++ +P
Sbjct: 120 QLQSLP 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 24  EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGI----PVDLFHLEDLTTL 74
           E L + +  +       L G +     LR L L  NK+ + G+    P  L     L TL
Sbjct: 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 75  DLSHNNI 81
            +    I
Sbjct: 262 WIWECGI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 24  EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
             L + + ++       L   L     LR L+L  N + ++GI   +  +      L  L
Sbjct: 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 75  DLSHNNI-KQIPDALENAKRTKATLD 99
            L      +++ D L+  ++ K +L 
Sbjct: 433 VLYDIYWSEEMEDRLQALEKDKPSLR 458

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 24  EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
           E L +   +L     E L   L      + L +  N I  +G+ V    L+D    L  L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 75  DLSHNNI 81
            L    +
Sbjct: 205 KLESCGV 211

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 10  CMASKSESVTIGL---TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIP 62
           C + +  SV  G+    + L + +N + KL    F  L  L+    L L  N++    +P
Sbjct: 26  CRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLK---ELYLGSNQLGA--LP 80

Query: 63  VDLF-HLEDLTTLDLSHNNIKQIPD 86
           V +F  L  LT LDL  N +  +P 
Sbjct: 81  VGVFDSLTQLTVLDLGTNQLTVLPS 105

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 9/68 (13%)

Query: 23  TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
              L +  N L  L    F  L  L+    L +  NK+    +P  +  L  LT L L  
Sbjct: 90  LTVLDLGTNQLTVLPSAVFDRLVHLK---ELFMCCNKLTE--LPRGIERLTHLTHLALDQ 144

Query: 79  NNIKQIPD 86
           N +K IP 
Sbjct: 145 NQLKSIPH 152

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 30  NNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQI 84
           +  L++L    F  L+++     + +R  +     I  D    L  L  L + +  +K  
Sbjct: 65  DVTLQQLESHSFYNLSKVT---HIEIRNTRNLTY-IDPDALKELPLLKFLGIFNTGLKMF 120

Query: 85  PD 86
           PD
Sbjct: 121 PD 122

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 4/43 (9%)

Query: 46 LRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNN-IKQIPD 86
           +TL L    ++   IP   F  L +++ + +S +  ++Q+  
Sbjct: 33 TQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLES 73

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 23  TEHLSIVNNNLEKL----FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLS 77
             +L++  N L+ L    F +LT+L+    L L  N++++  +P  +F  L  L  L L 
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLK---ELALNTNQLQS--LPDGVFDKLTQLKDLRLY 132

Query: 78  HNNIKQIPD 86
            N +K +PD
Sbjct: 133 QNQLKSVPD 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	273
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	100.0
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	100.0
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	100.0
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	100.0
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	100.0
1d0n_A	729	Horse plasma gelsolin; mixed alpha-beta structure,	100.0
1svq_A	114	Severin; actin-binding; NMR {Dictyostelium discoid	99.76
1j72_A	347	Macrophage capping protein; actin, human, CAP G, G	99.71
1kcq_A	104	Gelsolin, brevin, ADF, AGEL; alpha-beta structure,	99.71
3tu5_B	297	Gelsolin, protein cordon-BLeu, thymosin beta-4; un	99.68
3fg7_A	398	Villin-1; actin binding protein, gelsolin, actin c	99.56
3fg6_A	371	Adseverin, scinderin; C-terminus of adseverin, act	99.51
2fh1_A	344	Gelsolin; calcium, contractIle protein; 1.55A {Hom	99.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.31
1t44_G	147	Chimera of gelsolin domain 1 and C-terminal domain	99.27
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
2ff3_A	150	Gelsolin; protein-protein complex, structural prot	99.19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.18
3cip_G	128	Gelsolin; actin, dictyostelium discoideum, actin-a	99.18
2vik_A	126	Villin 14T; actin-binding protein, capping protein	99.16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.14
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.12
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.11
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.02
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.02
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.01
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.01
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.01
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.99
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.98
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.97
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.97
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.97
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.93
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.93
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.9
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.89
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.88
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.88
1kcq_A	104	Gelsolin, brevin, ADF, AGEL; alpha-beta structure,	98.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.85
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.85
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.81
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.81
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.8
1svq_A	114	Severin; actin-binding; NMR {Dictyostelium discoid	98.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.79
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.77
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.76
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.75
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.72
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.72
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.72
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.7
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.68
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.65
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.61
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.6
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.58
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.58
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.56
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.54
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.51
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.42
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.37
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.09
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.95
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.89
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.56
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.64
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.55
3tu5_B	297	Gelsolin, protein cordon-BLeu, thymosin beta-4; un	95.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.11
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	94.24
2vik_A	126	Villin 14T; actin-binding protein, capping protein	93.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.72
3cip_G	128	Gelsolin; actin, dictyostelium discoideum, actin-a	92.01
2ff3_A	150	Gelsolin; protein-protein complex, structural prot	91.64
1t44_G	147	Chimera of gelsolin domain 1 and C-terminal domain	90.58
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	88.85
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	87.45
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	87.09
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	86.3
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	86.28
3efo_B	770	SEC24 related gene family, member D; copii, coat p	85.98
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	85.76
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	85.69
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	85.25
3efo_B	770	SEC24 related gene family, member D; copii, coat p	85.1
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	82.53
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	82.05

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A

Probab=100.00  E-value=1.2e-37  Score=270.95  Aligned_cols=222  Identities=25%  Similarity=0.320  Sum_probs=180.4

Q ss_pred             hcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhhhh
Q psy8923          40 LTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAA  117 (273)
Q Consensus        40 ~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~  117 (273)
                      .++-+.|+...+.+..+..  +|+... .+ ..=.++-|.--.-..  ..||.|+|.+++.++.+++++.+.+|++.+++
T Consensus        15 ~~~~~g~~iWrie~~~~~~--vp~~~~G~Fy~gd~Yivl~t~~~~~--~~i~~W~G~~ss~de~~~aa~~t~~ld~~lgg   90 (347)
T 1j72_A           15 SVQDPGLHVWRVEKLKPVP--VAQENQGVFFSGDSYLVLHNGPEEV--SHLHLWIGQQSSRDEQGACAVLAVQLDDYLGG   90 (347)
T ss_dssp             TTSSSEEEEEEECSSSEEE--CCTTTTTEEETTSEEEEEEECSSSC--EEEEEEECTTSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccCCCeEEEEEcCCEEEE--CCHHHcCeecCCCEEEEEEeecCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            3445677777777766665  775322 11 111122222111111  67999999999999999999999999999999


Q ss_pred             hhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCc-ceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCC
Q psy8923         118 ECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTV-YTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRF  196 (273)
Q Consensus       118 ~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~-~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~d  196 (273)
                      .++|+|+.||+||++|+++|++++++++|+ ..+++.++.+.. ..++||||+|+      +++++.|||++++|||++|
T Consensus        91 ~~vq~R~~Qg~Es~~Fl~~F~~~~~i~~Gg-~~sgf~~~~~~~~~~~rL~~v~G~------~~v~~~eV~~~~~sLns~d  163 (347)
T 1j72_A           91 RPVQHREVQGNESDLFMSYFPRGLKYQEGG-VESGFKHVVPNEVVVQRLYQVKGK------KNIRATERALNWDSFNTGD  163 (347)
T ss_dssp             CSEEEEEETTSCCHHHHTTCSSCCEEECSS-CCTTCCCCCCCCCEEEEEEEEECS------SSCEEEEECSSGGGCBTTS
T ss_pred             CCcEEEeeCCCCCHHHHHhhCCCeEEeeCC-ccccccccccCCCCCcEEEEEECC------CceEEEEEeeeHHHcCCCc
Confidence            999999999999999999999999999999 889998887655 46799999998      6889999999999999999


Q ss_pred             EEEEECCCeEEEEeCCCCCHHHHHHhhhhh----------------------cccccc--C---CC--------------
Q psy8923         197 VFLLDAGLKLFIWNGPKAKNTFVFLLDAGL----------------------KLFIWN--G---PK--------------  235 (273)
Q Consensus       197 vfild~~~~~~vW~G~~s~~~e~~~~~~~~----------------------~~~fw~--~---~~--------------  235 (273)
                      |||||+++.+|+|+|++|+.+||..|..+|                      +.+||.  |   .+              
T Consensus       164 ~FIL~~~~~iy~W~G~~s~~~Er~~A~~~a~~i~~~~~~g~~~v~~v~EG~E~~~Fw~~LGg~~~~~~~~~~~d~~~~~~  243 (347)
T 1j72_A          164 CFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGNPEEDLTADKA  243 (347)
T ss_dssp             EEEEEETTEEEEEECTTCCHHHHHHHHHHHHHHHTTSCCSSCEEEEEETTCCCHHHHHHHCSCCCCBCSCCSSCCTTSSS
T ss_pred             eEEEecCCEEEEEECCCCCHHHHHHHHHHHHHHHhhccCCCceEEEEeCCCCHHHHHHHhCCCcccccCCcchhhhhhhh
Confidence            999999999999999999999999876443                      557777  2   00              


Q ss_pred             --------------------------------CCCceEEEEeCC--ceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923         236 --------------------------------AKNTFVFLLDAG--LKLFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       236 --------------------------------~~~~~v~~ld~~--~~~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                                                      ..+++|||||++  .+||||+|++|+..||+.|+++|++
T Consensus       244 ~~~~~rLy~vs~~~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er~~A~~~A~~  314 (347)
T 1j72_A          244 NAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEG  314 (347)
T ss_dssp             SSCCCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEECCCCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                            011359999999  9999999999999999999999986

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}

Probab=100.00  E-value=2e-37  Score=270.20  Aligned_cols=218  Identities=24%  Similarity=0.238  Sum_probs=168.2

Q ss_pred             ccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhhhhhhhh
Q psy8923          44 QCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRT  121 (273)
Q Consensus        44 ~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~  121 (273)
                      ..|+...+.+.....  +|+... .+ ..=.++-|.--   .....+|.|+|.+++.++.+.+++.+.+|++.+++.|+|
T Consensus        52 g~l~vWrIe~~~~~~--vp~~~~G~Fy~gD~YIvl~ty---~~~~~i~~W~G~~ss~de~g~aa~~~v~Ld~~lgg~~vq  126 (371)
T 3fg6_A           52 GKVEIWRVENNGRIQ--VDQNSYGEFYGGDCYIILYTY---PRGQIIYTWQGANATRDELTTSAFLTVQLDRSLGGQAVQ  126 (371)
T ss_dssp             CEEEEEEECSSSEEE--CCGGGTTEECTTCEEEEEEEC---SSCEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred             CcEEEEEEECCeeee--CChHHcCeEecCceEEEEEEe---cCCeEEEEeeCCCCChhHHHHHHHHHHHHHHHcCCCceE
Confidence            467777777777776  776432 11 11112222111   345679999999999999999999999999999999999


Q ss_pred             cccccCCCchhhHhhccCC-cEEecCCcccccceecccCcceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEE
Q psy8923         122 IREEQGDESEEFLSLFNTG-ISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLL  200 (273)
Q Consensus       122 ~~~~qg~e~~~fl~lf~~~-i~~l~g~~~~s~~~~~~~~~~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfil  200 (273)
                      +|+.||+||++|+++|+++ +++++|+ ..++...  .....+|||||+|+    ...++++.|||++++|||++|||||
T Consensus       127 ~R~~QG~Es~~Fls~Fkg~~~ii~~Gg-~~~~~~~--~~~~~~rL~~vrg~----~~~~vr~~EV~~~~ssLns~d~FIL  199 (371)
T 3fg6_A          127 IRVSQGKEPVHLLSLFKDKPLIIYKNG-TSKKGGQ--APAPPTRLFQVRRN----LASITRIVEVDVDANSLNSNDVFVL  199 (371)
T ss_dssp             EEEETTCCCHHHHTTSCSSCEEEC-----------------CCEEEEEECC----SSSCCEEEEECSSGGGCBTTSEEEE
T ss_pred             EEEecCCCcHHHHHHhCCceEEEEcCC-ccCCCcc--CCcCccEEEEEecc----CCCceEEEEecCCHHHccCCCeEEE
Confidence            9999999999999999998 8888988 5443222  12345799999998    3468999999999999999999999


Q ss_pred             ECC-CeEEEEeCCCCCHHHHHHhhhhh---------------cccccc--C---CC------------------------
Q psy8923         201 DAG-LKLFIWNGPKAKNTFVFLLDAGL---------------KLFIWN--G---PK------------------------  235 (273)
Q Consensus       201 d~~-~~~~vW~G~~s~~~e~~~~~~~~---------------~~~fw~--~---~~------------------------  235 (273)
                      |++ +.+|+|+|++|+.+||.+|..+|               +++||+  |   +|                        
T Consensus       200 d~~~~~iyvW~G~~ss~~Er~~A~~~a~~i~~~~~~v~EG~Ep~~Fw~~LGg~~~~~~~~~~~~~~~~~~~rLf~~s~~~  279 (371)
T 3fg6_A          200 KLPQNSGYIWVGKGASQEEEKGAEYVASVLKCKTLRIQEGEEPEEFWNSLGGKKDYQTSPLLETQAEDHPPRLYGCSNKT  279 (371)
T ss_dssp             ECTTSEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCCCHHHHHHTTSCCCCBCCTTTSSCCCSSCCEEEEEECTT
T ss_pred             EcCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHcCCCcccCcchhhcccccccCcEEEEEEcCC
Confidence            999 99999999999999999977543               667887  2   11                        


Q ss_pred             ----------------CCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         236 ----------------AKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       236 ----------------~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                                      ..+++|||||++.+||||+|++|+++||+.|+.+|++.
T Consensus       280 G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er~~A~~~A~~y  333 (371)
T 3fg6_A          280 GRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSAKMY  333 (371)
T ss_dssp             SSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHTTC
T ss_pred             CcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence                            12245999999999999999999999999999999863

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A

Probab=100.00  E-value=7.1e-38  Score=274.71  Aligned_cols=183  Identities=25%  Similarity=0.310  Sum_probs=32.7

Q ss_pred             CccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcce
Q psy8923          83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYT  162 (273)
Q Consensus        83 ~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~  162 (273)
                      .....+|.|+|.+++.++.+.+++.+.+|++.++|.|+|+|+.||+||++|+++|++++++++|+ ......  ......
T Consensus       102 ~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~~lgg~~vq~Re~QG~Es~~Fls~Fkg~iii~~Gg-~~~~~~--~~~~~~  178 (398)
T 3fg7_A          102 KQHYLLYVWQGSQASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGG-TSRTNN--LETGPS  178 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCceEEEEeecCCCCHHHHHHhCCeEEEeeCC-cccCCc--cCccCC
Confidence            34567999999999999999999999999999999999999999999999999999999999999 543211  122335


Q ss_pred             eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh----------------
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL----------------  226 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~----------------  226 (273)
                      +|||+|+|+    ...++++.|||++++|||++||||||+++.+|+|+|++|+.+||.+|..+|                
T Consensus       179 ~rLf~VrG~----~~~~~ra~EV~~s~sSLns~d~FILd~~~~iyvW~G~~ss~~Er~~A~~va~~i~~~~~~~v~EG~E  254 (398)
T 3fg7_A          179 TRLFQVQGT----GANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMVADTISRTEKQVVVEGQE  254 (398)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEECC----CCCceEEEEecCCHHHccCCceEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHhcCCcEEEEeCCCC
Confidence            799999998    234789999999999999999999999999999999999999998876433                


Q ss_pred             cccccc--C---CC---------------------------------------CCCceEEEEeCCceEEEEeCCCcchHh
Q psy8923         227 KLFIWN--G---PK---------------------------------------AKNTFVFLLDAGLKLFIWNGPKAKNTF  262 (273)
Q Consensus       227 ~~~fw~--~---~~---------------------------------------~~~~~v~~ld~~~~~~~w~G~~a~~~~  262 (273)
                      +.+||+  |   +|                                       ...++|||||+|.+||||+|++|++.|
T Consensus       255 p~~Fw~~LGg~~~~~~~~~~~~~~~~~~~rLf~~s~~~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~E  334 (398)
T 3fg7_A          255 PANFWMALGGKAPYANTKRLQEENLVITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEE  334 (398)
T ss_dssp             -----------------------CCCCCCEEEEEECTTSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHH
T ss_pred             chhHHHHhCCCccCCChhhhccchhcccCeeEEEEcCCCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHH
Confidence            678998  1   11                                       122459999999999999999999999


Q ss_pred             HHhHHHHhhh
Q psy8923         263 KSKTRLLAEK  272 (273)
Q Consensus       263 ~~~~~~~~~~  272 (273)
                      |+.|+.+|++
T Consensus       335 r~~Al~~A~~  344 (398)
T 3fg7_A          335 KKAAATTAQE  344 (398)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999975

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A

Probab=100.00  E-value=4.3e-36  Score=260.44  Aligned_cols=182  Identities=24%  Similarity=0.300  Sum_probs=156.0

Q ss_pred             ccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCC-cEEecCCcccccceecccCcce
Q psy8923          84 IPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTG-ISYIEGGRTASGFFTVEDTVYT  162 (273)
Q Consensus        84 ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~-i~~l~g~~~~s~~~~~~~~~~~  162 (273)
                      ....+|.|+|.+++.++.+.+++.+.+|++.+++.++|+|+.||+||.+|+++|+++ +++++|+...+++.   .....
T Consensus        48 ~~~~i~~W~G~~ss~de~~~aa~~~~~ld~~lgg~~vq~R~~Qg~Es~~Fl~~F~g~~~ii~~gg~~~~~~~---~~~~~  124 (344)
T 2fh1_A           48 QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQ---TAPAS  124 (344)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSCSEEEEEETTCCCHHHHGGGTTCCEEEESCCCCTTTCS---CCCCS
T ss_pred             ceEEEEEEecCCCCHhHHHHHHHHHHHHHHHhCCCceEEEeecCCCCHHHHHhhCCCeEEEEcCCcccCCcc---CCCCC
Confidence            456799999999999999999999999999999999999999999999999999987 67778762333321   23345


Q ss_pred             eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh---------------c
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL---------------K  227 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~---------------~  227 (273)
                      +|||||+|+    ...++++.|||++++|||++|||||++++.+|+|+|++|+..||..|..+|               +
T Consensus       125 ~rL~~v~g~----~~~~~~~~eV~~~~ssLns~d~FIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l~~~i~~v~EG~E~  200 (344)
T 2fh1_A          125 TRLFQVRAN----SAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVLRAQPVQVAEGSEP  200 (344)
T ss_dssp             SEEEEEEEC----TTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHTTCCCEEEETTCCC
T ss_pred             ceEEEEECC----CCCceEEEEecCchhhcCCCceEEEecCCEEEEEECCCCCHHHHHHHHHHHHHhCCCcEEEeCCCCc
Confidence            799999998    346899999999999999999999999999999999999999999887653               6


Q ss_pred             ccccc--C---CCC-----------------------------------------CCceEEEEeCCceEEEEeCCCcchH
Q psy8923         228 LFIWN--G---PKA-----------------------------------------KNTFVFLLDAGLKLFIWNGPKAKNT  261 (273)
Q Consensus       228 ~~fw~--~---~~~-----------------------------------------~~~~v~~ld~~~~~~~w~G~~a~~~  261 (273)
                      ++||+  |   +|.                                         .+++|||||+|.+||||+|++|++.
T Consensus       201 ~~Fw~~LGg~~~y~~~~~~~~~~~~~~~~rLf~~s~~~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~  280 (344)
T 2fh1_A          201 DGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEE  280 (344)
T ss_dssp             HHHHHHTTSCCCCBCCHHHHCSCC--CCCEEEEEECTTSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHH
T ss_pred             HHHHHhcCCCCccccccccccccccccCCEEEEEEcCCCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHH
Confidence            67887  2   111                                         1245999999999999999999999


Q ss_pred             hHHhHHHHhhh
Q psy8923         262 FKSKTRLLAEK  272 (273)
Q Consensus       262 ~~~~~~~~~~~  272 (273)
                      ||+.|+.+|++
T Consensus       281 er~~A~~~A~~  291 (344)
T 2fh1_A          281 EKTEALTSAKR  291 (344)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999975

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*

Probab=100.00  E-value=1e-35  Score=280.23  Aligned_cols=224  Identities=24%  Similarity=0.364  Sum_probs=182.9

Q ss_pred             hcCCccCCEeeccCCcCccCCCCcccc-CC---CCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhh
Q psy8923          40 LTELQCLRTLNLRYNKIKNSGIPVDLF-HL---EDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFL  115 (273)
Q Consensus        40 ~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l---~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l  115 (273)
                      .++-+.|+...+-+..+..  +|+... .+   -+-..|+--...=..+...||.|+|.+++.++.+.+++.+++|++.+
T Consensus         9 ~g~~~g~~iWrIe~~~~~~--v~~~~~G~Fy~gdsYivL~t~~~~~~~~~~~i~~W~G~~ss~de~g~aA~~tveLd~~l   86 (729)
T 1d0n_A            9 AGKEPGLQIWRVEKFDLVP--VPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYL   86 (729)
T ss_dssp             TTSSSEEEEEEECSSSEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             cccCCCeEEEEEcCCEEEe--CChHhcCcccCCCEEEEEEeccCCCCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHc
Confidence            4556777887777666665  776432 11   12222331111111456689999999999999999999999999999


Q ss_pred             hhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcc-eeeEEEEecCcccCCCCceEEEEecCCCCCCCC
Q psy8923         116 AAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVY-TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDP  194 (273)
Q Consensus       116 ~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~-~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s  194 (273)
                      +|.|+|+|+.||+||++|+++|++++++++|+ ..++|.++.+..+ .+|||||+|+      +++++.|||++++|||+
T Consensus        87 gg~~vq~Re~Qg~Es~~Fl~~Fk~~i~~~~Gg-~~sgf~~v~~~~~~~~rL~~vkG~------~~v~~~eV~~s~~SLns  159 (729)
T 1d0n_A           87 NGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHVVPNEVVVQRLLQVKGR------RVVRATEVPVSWESFNN  159 (729)
T ss_dssp             TSCCEEEEEETTCCCHHHHHTCSSCEEEESCC-TTTTCCCCCCSSCCCCEEEEEECS------SSCEEEEECSSGGGCCS
T ss_pred             CCcceEEEEecCCCCHHHHHhccCCcEEeeCC-cccCcccccccCCCCcEEEEEECC------CcEEEEEEeccHHHcCC
Confidence            99999999999999999999999999999999 9999999887664 6799999998      68999999999999999


Q ss_pred             CCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh----------------------cccccc--C---CCC-----------
Q psy8923         195 RFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL----------------------KLFIWN--G---PKA-----------  236 (273)
Q Consensus       195 ~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~----------------------~~~fw~--~---~~~-----------  236 (273)
                      +||||||+++.+|+|+|++|+..||..|..+|                      +++||+  |   +|.           
T Consensus       160 ~DvFILd~g~~iy~W~G~~s~~~Er~kA~~~a~~i~~~er~g~~~i~~v~Eg~e~~eFw~~LGg~~~~~~~~~~~~~~~~  239 (729)
T 1d0n_A          160 GDCFILDLGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKEDA  239 (729)
T ss_dssp             SSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHHHHHSGGGCSEEEEEETTCCCHHHHHHHCSCCCCCCCCGGGSCCCC
T ss_pred             CCeEEEEcCCEEEEEECCCCCHHHHHHHHHHHHHHhhhhcCCCccEEEecCCCChHHHHHHcCCCcccCCCCcchhhhhh
Confidence            99999999999999999999999999876543                      457887  2   110           


Q ss_pred             ----------------------------------CCceEEEEeCCc-e-EEEEeCCCcchHhHHhHHHHhhh
Q psy8923         237 ----------------------------------KNTFVFLLDAGL-K-LFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       237 ----------------------------------~~~~v~~ld~~~-~-~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                                                        .+++|||||+|. + ||||+|++|+..||+.|+.+|++
T Consensus       240 ~~~~~~rLy~vs~~~G~l~~~ev~~~~~~~q~~L~~~dv~ILD~g~~~~ifVW~Gk~a~~~er~~A~~~A~~  311 (729)
T 1d0n_A          240 ANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASD  311 (729)
T ss_dssp             CCCCCCEEEEEECSSSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHHHTTHHHHHHH
T ss_pred             ccccCcEEEEEECCCCCEEEEEeccCCCCCHHHcCCCCEEEEecCCccEEEEEECCCCCHHHHHHHHHHHHH
Confidence                                              113599999995 4 99999999999999999999975

>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G*

Probab=100.00  E-value=3e-34  Score=270.23  Aligned_cols=182  Identities=23%  Similarity=0.300  Sum_probs=158.8

Q ss_pred             ccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCC-cEEecCCcccccceecccCcce
Q psy8923          84 IPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTG-ISYIEGGRTASGFFTVEDTVYT  162 (273)
Q Consensus        84 ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~-i~~l~g~~~~s~~~~~~~~~~~  162 (273)
                      ....+|.|+|.+++.++.+.+++.+.+|++.+++.|+|+|+.||+||++|+++|+++ +++++|+ ..+  .+.......
T Consensus       433 ~~~~iyfW~G~~ss~de~g~aa~~~veLd~~lgg~~vq~R~~Qg~E~~~Fl~~F~g~~~ii~~Gg-~~~--~~~~~~~~~  509 (729)
T 1d0n_A          433 QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYKGG-TSR--EGGQTAPAS  509 (729)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTSCSEEEEEETTCCCHHHHTTSTTSCEEEESSC-CCS--SCCCCCCCS
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCceEEecccCCCCHHHHHhcCCCeEEEEeCC-ccc--cCccCCCCC
Confidence            345789999999999999999999999999999999999999999999999999999 9999999 443  222333456


Q ss_pred             eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh---------------c
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL---------------K  227 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~---------------~  227 (273)
                      +|||+|+|+    ...++++.|||++++||||+|||||++++.+|+|+|++|+.+||.+|..+|               +
T Consensus       510 ~rLf~vrg~----~~~~~~~~eV~~~~ssLns~d~fIL~~~~~iyvW~G~~s~~~er~~A~~~a~~l~~~~~~v~EG~E~  585 (729)
T 1d0n_A          510 TRLFQVRAS----SSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELLRVLRAQPVQVAEGSEP  585 (729)
T ss_dssp             SEEEEEEEC----TTSCEEEEEECCCGGGCCSSSEEEEECSSCCBCEECTTCCHHHHHHHHHHHHHHTCCCCCEETTCCC
T ss_pred             CEEEEEECC----CCCceEEEEecCChhhcCcCCeEEEecCCeEEEEECCCCCHHHHHHHHHHHHHhccCcEEEeCCCCh
Confidence            799999998    346899999999999999999999999999999999999999999987653               7


Q ss_pred             ccccc--C---CCC-----------------------------------------CCceEEEEeCCceEEEEeCCCcchH
Q psy8923         228 LFIWN--G---PKA-----------------------------------------KNTFVFLLDAGLKLFIWNGPKAKNT  261 (273)
Q Consensus       228 ~~fw~--~---~~~-----------------------------------------~~~~v~~ld~~~~~~~w~G~~a~~~  261 (273)
                      ++||+  |   +|+                                         ..++|||||+|.+||||+|++|++.
T Consensus       586 ~~FW~~LGg~~~y~~~~~~~~~~~~~~~~rLf~~s~~~G~~~v~ev~~~f~Q~dL~~~dv~iLD~~~eifvWiG~~a~~~  665 (729)
T 1d0n_A          586 DSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDE  665 (729)
T ss_dssp             HHHHHTTTSCCCCCCCCCCSTTHHHHSCCEEEEEECTTTCCEEEECCSSCCGGGCCTTSEEEEECSSCEEEEECTTSCHH
T ss_pred             HHHHHhcCCCCccCcccccccccccccCCeEEEEEcCCCcEEEEEecCcccHhHCCCCCEEEEeCCCEEEEEECCCCCHH
Confidence            78887  1   221                                         1235999999999999999999999


Q ss_pred             hHHhHHHHhhh
Q psy8923         262 FKSKTRLLAEK  272 (273)
Q Consensus       262 ~~~~~~~~~~~  272 (273)
                      ||+.|+.+|++
T Consensus       666 er~~al~~A~~  676 (729)
T 1d0n_A          666 EKTEALTSAKR  676 (729)
T ss_dssp             HHSSHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999975

>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A

Probab=99.76  E-value=1.3e-18  Score=126.35  Aligned_cols=90  Identities=26%  Similarity=0.335  Sum_probs=69.2

Q ss_pred             ccceecccCcceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhcccc
Q psy8923         151 SGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFI  230 (273)
Q Consensus       151 s~~~~~~~~~~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~f  230 (273)
                      +||.++++..+.++||||+|+      .++++.|||++++|||++||||||+++.+|+|+|++|+..||..|..+|... 
T Consensus         1 SGf~~v~~~~~~~rL~~v~G~------~~~~~~eV~~~~ssLns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i-   73 (114)
T 1svq_A            1 SGFNHVKPTEYKPRLLHISGD------KNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI-   73 (114)
T ss_dssp             ---------CCCEEEEEEECT------TSCEEEEECCCSSSCCTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH-
T ss_pred             CCCccccCCCCCcEEEEEECC------CcEEEEEecCCHHHcCCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh-
Confidence            468888887788899999998      7899999999999999999999999999999999999999999998887543 


Q ss_pred             ccCCCCCCceEEEEeCCc
Q psy8923         231 WNGPKAKNTFVFLLDAGL  248 (273)
Q Consensus       231 w~~~~~~~~~v~~ld~~~  248 (273)
                       +.++.....|.++|.|.
T Consensus        74 -~~er~g~~~i~vv~eg~   90 (114)
T 1svq_A           74 -DAERKGLPKVEVFCETD   90 (114)
T ss_dssp             -HHHHTTCSEEEECCCCT
T ss_pred             -hhccCCCccEEEEeCCC
Confidence             32222224688888877

>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A

Probab=99.71  E-value=1.1e-17  Score=145.13  Aligned_cols=161  Identities=22%  Similarity=0.238  Sum_probs=126.3

Q ss_pred             ccchhhhhhhcccccchhccccccccchh-hhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcce
Q psy8923          84 IPDALENAKRTKATLDKRACSAIHAVNLR-NFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYT  162 (273)
Q Consensus        84 ip~~l~~w~g~~~~~~~~~~~~l~~~~L~-~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~  162 (273)
                      .+..+|.|.|..++..++..+...+..+. +..++.+....+.+|.|+..|..+++++..+..+. ...+..........
T Consensus       169 ~~~~iy~W~G~~s~~~Er~~A~~~a~~i~~~~~~g~~~v~~v~EG~E~~~Fw~~LGg~~~~~~~~-~~~d~~~~~~~~~~  247 (347)
T 1j72_A          169 LGQNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGN-PEEDLTADKANAQA  247 (347)
T ss_dssp             ETTEEEEEECTTCCHHHHHHHHHHHHHHHTTSCCSSCEEEEEETTCCCHHHHHHHCSCCCCBCSC-CSSCCTTSSSSSCC
T ss_pred             cCCEEEEEECCCCCHHHHHHHHHHHHHHHhhccCCCceEEEEeCCCCHHHHHHHhCCCcccccCC-cchhhhhhhhcccC
Confidence            35579999999999999988877777774 34556666777889999999999999876655554 32222112223346


Q ss_pred             eeEEEEecCcccCCCCceEEEEe----cCCCCCCCCCCEEEEECC--CeEEEEeCCCCCHHHHHHhhhhhccccccCCCC
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPV----PVLSESLDPRFVFLLDAG--LKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKA  236 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev----~~~~ssL~s~dvfild~~--~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~  236 (273)
                      ++||+|+..     .+...+.+|    |++.++|+++||||||++  ..+|||.|++|+..||..|...|..++-...++
T Consensus       248 ~rLy~vs~~-----~G~~~v~ev~~~~~~~q~~L~s~dv~ILD~g~~~~IyVW~G~~a~~~er~~A~~~A~~y~~~~~rp  322 (347)
T 1j72_A          248 AALYKVSDA-----TGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYA  322 (347)
T ss_dssp             CEEEEEECT-----TSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CEEEEEECC-----CCCEEEEeeccCCCCCHHHcCCCCEEEEecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            799999966     477888899    899999999999999999  899999999999999999998886665444555


Q ss_pred             CCceEEEEeCCceE
Q psy8923         237 KNTFVFLLDAGLKL  250 (273)
Q Consensus       237 ~~~~v~~ld~~~~~  250 (273)
                      ....|.++..|.|.
T Consensus       323 ~~~~i~~v~eG~Ep  336 (347)
T 1j72_A          323 PNTQVEILPQGRES  336 (347)
T ss_dssp             TTCEEEEEETTCCC
T ss_pred             CCCeEEEEcCCCCC
Confidence            66789999888764

>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1

Probab=99.71  E-value=4.5e-17  Score=116.43  Aligned_cols=82  Identities=22%  Similarity=0.310  Sum_probs=69.5

Q ss_pred             eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceE
Q psy8923         162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFV  241 (273)
Q Consensus       162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v  241 (273)
                      .+|||||+|+      +++++.|||++++|||++||||||+++.+|+|+|++|+..||..|..+|.. +.+.++.....|
T Consensus         2 ~~rL~~v~g~------~~~~~~eV~~~~~sLns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~-i~~~er~~~~~i   74 (104)
T 1kcq_A            2 VQRLFQVKGR------RVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG-IRDNERSGRARV   74 (104)
T ss_dssp             CCEEEEEEES------SSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH-HHHHTSTTCSEE
T ss_pred             CcEEEEEECC------CcEEEEEecCCHHHcCCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHH-HHhhccCCCCcE
Confidence            4799999998      799999999999999999999999999999999999999999999988743 333233334578


Q ss_pred             EEEeCCceE
Q psy8923         242 FLLDAGLKL  250 (273)
Q Consensus       242 ~~ld~~~~~  250 (273)
                      .++|.|.|.
T Consensus        75 ~~v~eG~E~   83 (104)
T 1kcq_A           75 HVSEEGTEP   83 (104)
T ss_dssp             EEEETTCCC
T ss_pred             EEEeCCCCC
Confidence            888988763

>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}

Probab=99.68  E-value=3.9e-18  Score=142.72  Aligned_cols=168  Identities=17%  Similarity=0.147  Sum_probs=95.7

Q ss_pred             hhhcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecc--cCCCCCccchhhhhhhcccccchhccccccccchhh
Q psy8923          38 GELTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLS--HNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRN  113 (273)
Q Consensus        38 ~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls--~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~  113 (273)
                      ...++-+.|+...+.+-....  +|.... .+ ..=.++-|.  .+.=..+...||.|+|.+++.++.+++++.+.+|++
T Consensus        27 ~~~g~~~Gl~iWrIe~~~~~~--v~~~~~G~Fy~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~de~g~aa~~av~Ld~  104 (297)
T 3tu5_B           27 LKAGKEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD  104 (297)
T ss_dssp             HHTTSSSEEEEEEEETTEEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCceEEEEEcCCEEEE--CCHHHcCeecCCCeEEEeEeEECCCCceeEEEEEEeCCCCChhHHHHHHHHHHHHHH
Confidence            334556778999887777765  776432 21 222233332  111124566799999999999999999999999999


Q ss_pred             hhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeEEEEecCcccCCCCceEEEEecCCCCCCC
Q psy8923         114 FLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLD  193 (273)
Q Consensus       114 ~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~  193 (273)
                      .+++.++|+|+.||+|+.+|++||++++++++|| ..+||.++++..+.+|+.++...      ......++.+++.+++
T Consensus       105 ~lgg~~vq~Re~Qg~Es~~Fl~~F~~~i~~~~GG-~~sgf~~v~~~~~~~r~~rl~~~------e~~~~r~~~ls~vs~~  177 (297)
T 3tu5_B          105 YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASKLRKVAEQTSEGRPKKPSYV------EAESERSALLAAIRGH  177 (297)
T ss_dssp             HTTTCCEEEEEETTCCCHHHHTTCTTCCEEESCC-CCCCCBCCCCCC---------------------------------
T ss_pred             HcCCCceEEEEeCCcCCHHHHHHhccCcEEecCC-CCCCCceecccCCCCcccceeee------eccccccceeeEEecc
Confidence            9999999999999999999999999999999999 99999999988887776666655      2223455678889999


Q ss_pred             CCCEEEEECCCeEEEEeCCCC
Q psy8923         194 PRFVFLLDAGLKLFIWNGPKA  214 (273)
Q Consensus       194 s~dvfild~~~~~~vW~G~~s  214 (273)
                      ++|||++|.+..+|.|.++..
T Consensus       178 ~Gd~fi~Dv~~~A~q~le~~r  198 (297)
T 3tu5_B          178 SGTLSLRKVSSLASEELQSFR  198 (297)
T ss_dssp             ---------------------
T ss_pred             CCceeeccccHHHHHHHHHHH
Confidence            999999999999999987654

>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A

Probab=99.56  E-value=1e-14  Score=127.99  Aligned_cols=158  Identities=15%  Similarity=0.167  Sum_probs=74.2

Q ss_pred             CCCCccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccC
Q psy8923          80 NIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDT  159 (273)
Q Consensus        80 ~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~  159 (273)
                      .+-..+..+|.|.|..++..++..+...+..+.+     .....+.+|.||..|...++++-.+.... .   .. ....
T Consensus       210 FILd~~~~iyvW~G~~ss~~Er~~A~~va~~i~~-----~~~~~v~EG~Ep~~Fw~~LGg~~~~~~~~-~---~~-~~~~  279 (398)
T 3fg7_A          210 FVLKTQSCCYLWCGKGCSGDEREMAKMVADTISR-----TEKQVVVEGQEPANFWMALGGKAPYANTK-R---LQ-EENL  279 (398)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             EEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHhcC-----CcEEEEeCCCCchhHHHHhCCCccCCChh-h---hc-cchh
Confidence            3445577899999999999988766665555532     12233567889999999888753322111 0   00 0112


Q ss_pred             cceeeEEEEecCcccCCCCceEEEEe-cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccC--CCC
Q psy8923         160 VYTTRLYRVHAPLHQAQASSIHLEPV-PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNG--PKA  236 (273)
Q Consensus       160 ~~~~~L~~v~g~~~~~~~~~~~~~ev-~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~--~~~  236 (273)
                      ...+|||+|+..     .+...+.|| |++.+.|+++||||||++..+|||.|++|+..||..|...|..++-..  +++
T Consensus       280 ~~~~rLf~~s~~-----~G~~~v~EV~~f~Q~dL~~~dv~ILD~g~~IfVW~G~~as~~Er~~Al~~A~~yi~~~~~~r~  354 (398)
T 3fg7_A          280 VITPRLFECSNK-----TGRFLATEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQEYLKTHPSGRD  354 (398)
T ss_dssp             CCCCEEEEEECT-----TSSCEEEECTTCCGGGCCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHHHHHSSSSCC
T ss_pred             cccCeeEEEEcC-----CCCEEEEEecccCHHHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhCcccCC
Confidence            346799999987     677889998 599999999999999999999999999999999999999886665442  455


Q ss_pred             CCceEEEEeCCceEEE
Q psy8923         237 KNTFVFLLDAGLKLFI  252 (273)
Q Consensus       237 ~~~~v~~ld~~~~~~~  252 (273)
                      ..+.|.++-.|.|.-.
T Consensus       355 ~~tpi~~V~eG~Ep~~  370 (398)
T 3fg7_A          355 PETPIIVVKQGHEPPT  370 (398)
T ss_dssp             TTCCEEEEETTCCCHH
T ss_pred             CCCCEEEEcCCCCCHH
Confidence            5678999988887543

>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens}

Probab=99.51  E-value=1.9e-14  Score=125.42  Aligned_cols=151  Identities=19%  Similarity=0.228  Sum_probs=108.6

Q ss_pred             chhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcceeeE
Q psy8923          86 DALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTTRL  165 (273)
Q Consensus        86 ~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~~L  165 (273)
                      ..+|.|.|..++..++..+...+..+.    ...  ..+.+|.||..|...++++-.+.... .   .. .....+.+||
T Consensus       204 ~~iyvW~G~~ss~~Er~~A~~~a~~i~----~~~--~~v~EG~Ep~~Fw~~LGg~~~~~~~~-~---~~-~~~~~~~~rL  272 (371)
T 3fg6_A          204 NSGYIWVGKGASQEEEKGAEYVASVLK----CKT--LRIQEGEEPEEFWNSLGGKKDYQTSP-L---LE-TQAEDHPPRL  272 (371)
T ss_dssp             SEEEEEECTTCCHHHHHHHHHHHHHTT----CEE--EEEETTCCCHHHHHHTTSCCCCBCCT-T---TS-SCCCSSCCEE
T ss_pred             CeEEEEECCCCCHHHHHHHHHHHHHhc----CCe--EEEeCCCCCHHHHHHcCCCcccCcch-h---hc-ccccccCcEE
Confidence            578999999999988776555444432    222  34667899999999998764332211 0   00 0112345799


Q ss_pred             EEEecCcccCCCCceEEEEe--cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccC--CCCCCceE
Q psy8923         166 YRVHAPLHQAQASSIHLEPV--PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNG--PKAKNTFV  241 (273)
Q Consensus       166 ~~v~g~~~~~~~~~~~~~ev--~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~--~~~~~~~v  241 (273)
                      |+|+..     .+...+.+|  |++.+.|+++||||||++..+|||.|++|+..||..|...|..++-..  +++..+.|
T Consensus       273 f~~s~~-----~G~~~v~ev~~~f~Q~dL~~~dv~ILD~~~~IfVW~G~~as~~Er~~A~~~A~~yi~~~~~~r~~~t~i  347 (371)
T 3fg6_A          273 YGCSNK-----TGRFVIEEIPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESLKSAKMYLETDPSGRDKRTPI  347 (371)
T ss_dssp             EEEECT-----TSSCEEEECCSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHTTCC----------CCE
T ss_pred             EEEEcC-----CCcEEEEEecccccHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhCccCCCCCCCE
Confidence            999987     577889998  589999999999999999999999999999999999999886665443  45566789


Q ss_pred             EEEeCCceEEE
Q psy8923         242 FLLDAGLKLFI  252 (273)
Q Consensus       242 ~~ld~~~~~~~  252 (273)
                      +++-.|.|.-.
T Consensus       348 ~~v~eG~Ep~~  358 (371)
T 3fg6_A          348 VIIKQGHEPPT  358 (371)
T ss_dssp             EEEETTCCCHH
T ss_pred             EEecCCCCCHH
Confidence            99998887543

>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A

Probab=99.46  E-value=5.6e-14  Score=121.58  Aligned_cols=154  Identities=18%  Similarity=0.211  Sum_probs=108.3

Q ss_pred             CccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCcce
Q psy8923          83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYT  162 (273)
Q Consensus        83 ~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~  162 (273)
                      ..|..+|.|.|..++..++..+...+..+    +.  ....+.+|.|+..|...++++-.+.... .   ..........
T Consensus       159 ~~~~~iyvW~G~~s~~~er~~A~~~a~~l----~~--~i~~v~EG~E~~~Fw~~LGg~~~y~~~~-~---~~~~~~~~~~  228 (344)
T 2fh1_A          159 KTPSAAYLWVGTGASEAEKTGAQELLRVL----RA--QPVQVAEGSEPDGFWEALGGKAAYRTSP-R---LKDKKMDAHP  228 (344)
T ss_dssp             ECSSCEEEEECTTCCHHHHHHHHHHHHHT----TC--CCEEEETTCCCHHHHHHTTSCCCCBCCH-H---HHCSCC--CC
T ss_pred             ecCCEEEEEECCCCCHHHHHHHHHHHHHh----CC--CcEEEeCCCCcHHHHHhcCCCCcccccc-c---cccccccccC
Confidence            34667999999999988876554433333    22  2334667889999999998753222111 0   0000112346


Q ss_pred             eeEEEEecCcccCCCCceEEEEe--cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccC--CCCCC
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPV--PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNG--PKAKN  238 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev--~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~--~~~~~  238 (273)
                      +|||+|+..     .+...+.+|  |++.+.|+++||||||++..+|||.|++|+..||..|...|..++-..  .++..
T Consensus       229 ~rLf~~s~~-----~G~~~v~ev~~~f~q~dL~~~dv~iLD~g~~IfVW~G~~as~~er~~A~~~A~~y~~~~~~~r~~~  303 (344)
T 2fh1_A          229 PRLFACSNK-----IGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRR  303 (344)
T ss_dssp             CEEEEEECT-----TSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHHHHTC-------
T ss_pred             CEEEEEEcC-----CCCEEEEEccCCcCHhHCCCCCEEEEeCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhCccCCCCC
Confidence            799999976     577889998  689999999999999999999999999999999999998886655433  45556


Q ss_pred             ceEEEEeCCceEE
Q psy8923         239 TFVFLLDAGLKLF  251 (273)
Q Consensus       239 ~~v~~ld~~~~~~  251 (273)
                      +.|.++-.|.|.-
T Consensus       304 t~i~~V~eG~Ep~  316 (344)
T 2fh1_A          304 TPITVVKQGFEPP  316 (344)
T ss_dssp             CCEEEEETTCCCH
T ss_pred             CcEEEEcCCCCCH
Confidence            7788888887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.31  E-value=1.1e-11  Score=101.23  Aligned_cols=78  Identities=27%  Similarity=0.408  Sum_probs=51.5

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCC
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNN   80 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~   80 (273)
                      +..|..|..+++|        ++|+|++|+|+.+| ..|..+++|+.|+|++|+|+.  +|..+ ..+++|+.|+|++|+
T Consensus        54 ~~~~~~~~~l~~L--------~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A           54 KLEPGVFDSLINL--------KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV--LPSAVFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             CCCTTTTTTCTTC--------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCHHHhhCccCC--------cEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc--cChhHhCcchhhCeEeccCCc
Confidence            3445555555555        56777777777776 446777777777777777776  55543 467777777777777


Q ss_pred             CCCccchhhh
Q psy8923          81 IKQIPDALEN   90 (273)
Q Consensus        81 l~~ip~~l~~   90 (273)
                      |+.+|..+..
T Consensus       124 l~~lp~~~~~  133 (229)
T 3e6j_A          124 LTELPRGIER  133 (229)
T ss_dssp             CCSCCTTGGG
T ss_pred             ccccCccccc
Confidence            7777765543

>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1

Probab=99.27  E-value=5.5e-13  Score=100.25  Aligned_cols=122  Identities=25%  Similarity=0.342  Sum_probs=91.9

Q ss_pred             hhcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecc-c-CCCCCccchhhhhhhcccccchhccccccccchhhh
Q psy8923          39 ELTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLS-H-NNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNF  114 (273)
Q Consensus        39 ~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls-~-N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~  114 (273)
                      ..++-+.|+...+.+-....  +|+... .+ ..=.++-|. + ..-......+|.|+|.+++.++.+.+++.+.+|++.
T Consensus        10 ~~g~~~gl~VWrIe~~~~~~--vp~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~   87 (147)
T 1t44_G           10 KAGKEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDY   87 (147)
T ss_dssp             HTTSSSEEEEEEEETTEEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCeEEEEEeCCEEEE--CChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCChhHHHHHHHHHHHHHHH
Confidence            34455677777777666665  775422 11 111122221 1 111144567999999999999999999999999999


Q ss_pred             hhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccceecccCccee
Q psy8923         115 LAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFTVEDTVYTT  163 (273)
Q Consensus       115 l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~~~~~~~~~  163 (273)
                      +++.++|+|+.||+||++|+++|++++++++|+ ..++++++++..+.+
T Consensus        88 lgg~~vq~R~~QG~Ep~~Fl~~F~~~iii~~Gg-~~s~~k~~et~~~~~  135 (147)
T 1t44_G           88 LNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKHVETQEKNP  135 (147)
T ss_dssp             TTTCCEEEEEETTCCCHHHHTTCTTCCEEESCC-CCCCCBCCCCEECCC
T ss_pred             cCCCceEEEEECCCCCHHHHHHhCCCeEEEeCC-cccccceeccccccC
Confidence            999999999999999999999999999999999 999999988765543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=1.9e-11  Score=95.59  Aligned_cols=66  Identities=35%  Similarity=0.484  Sum_probs=58.2

Q ss_pred             CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccchh
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                      .+|++|+|++|+|+++ |..|.++++|++|+|++|+|++  +|..+ .++++|+.|+|++|+|+.+|...
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~l~~l~~~~  100 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNHLKSIPRGA  100 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCccceeCHHH
Confidence            4668899999999998 4789999999999999999998  88775 58999999999999999988763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.25  E-value=1.9e-11  Score=99.12  Aligned_cols=62  Identities=29%  Similarity=0.347  Sum_probs=35.1

Q ss_pred             CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +|++|+|++|+|+++ |..|.++++|++|+|++|+|+.  +|..+ .++++|+.|+|++|+|+.++
T Consensus        57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~  120 (220)
T 2v9t_B           57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLLLLNANKINCLR  120 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEEECCCCCCCEeC
Confidence            345566666666654 4556666666666666666665  55443 35556666666666655443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.25  E-value=6e-12  Score=120.20  Aligned_cols=80  Identities=31%  Similarity=0.393  Sum_probs=54.6

Q ss_pred             CCCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923           2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN   80 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~   80 (273)
                      .|.+|..++.++.|        ++|+|++|++++ +|..|++|++|+.|+|++|++++ .+|..++++++|+.||||+|+
T Consensus       621 ~g~~~~~~~~l~~L--------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~  691 (768)
T 3rgz_A          621 GGHTSPTFDNNGSM--------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNK  691 (768)
T ss_dssp             EEECCCSCSSSBCC--------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSC
T ss_pred             cccCchhhhccccc--------cEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCc
Confidence            35667777776666        447777777775 56677777777777777777774 677777777777777777777


Q ss_pred             CC-Cccchhhh
Q psy8923          81 IK-QIPDALEN   90 (273)
Q Consensus        81 l~-~ip~~l~~   90 (273)
                      |+ .+|..+..
T Consensus       692 l~g~ip~~l~~  702 (768)
T 3rgz_A          692 LDGRIPQAMSA  702 (768)
T ss_dssp             CEECCCGGGGG
T ss_pred             ccCcCChHHhC
Confidence            77 66665544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.23  E-value=2.9e-11  Score=96.13  Aligned_cols=63  Identities=29%  Similarity=0.471  Sum_probs=35.1

Q ss_pred             ccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCCCccch
Q psy8923          23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        23 l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      |++|+|++|.|++++ ..|.++++|+.|+|++|+|+.  +|. .+.++++|+.|+|++|+|+.+|..
T Consensus        56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~L~L~~N~l~~~~~~  120 (193)
T 2wfh_A           56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC--IPPRTFDGLKSLRLLSLHGNDISVVPEG  120 (193)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE--eCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence            344566666666554 445556666666666666655  333 344555666666666666555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.22  E-value=1.6e-11  Score=93.20  Aligned_cols=73  Identities=32%  Similarity=0.387  Sum_probs=50.0

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      |.+|..++.+++|        ++|+|++|.|+++ ..++.+++|++|+|++|++++ .+|..+..+++|+.|++++|+++
T Consensus        32 ~~~~~~~~~l~~L--------~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~ls~N~i~  101 (149)
T 2je0_A           32 GKLEGLTDEFEEL--------EFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHLNLSGNKIK  101 (149)
T ss_dssp             TBCCSCCTTCTTC--------CEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCEEECTTSCCC
T ss_pred             hHHHHHHhhcCCC--------cEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCEEECCCCcCC
Confidence            5677777777766        5577777777776 666677777777777777775 45555555777777777777777


Q ss_pred             Ccc
Q psy8923          83 QIP   85 (273)
Q Consensus        83 ~ip   85 (273)
                      .+|
T Consensus       102 ~~~  104 (149)
T 2je0_A          102 DLS  104 (149)
T ss_dssp             SHH
T ss_pred             ChH
Confidence            654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.22  E-value=9.6e-12  Score=118.80  Aligned_cols=78  Identities=29%  Similarity=0.445  Sum_probs=72.3

Q ss_pred             CCCCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccC
Q psy8923           1 MVGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN   79 (273)
Q Consensus         1 ~~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N   79 (273)
                      ++|.+|..|+.++.|        +.|+|++|+|++ ||..|++|++|+.|+|++|++++ .+|..+.++++|+.|+||+|
T Consensus       644 l~g~ip~~l~~l~~L--------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          644 LSGYIPKEIGSMPYL--------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG-RIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CBSCCCGGGGGCTTC--------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-CCCGGGGGCCCCSEEECCSS
T ss_pred             ccccCCHHHhccccC--------CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECcCC
Confidence            578999999999888        559999999997 89999999999999999999996 89999999999999999999


Q ss_pred             CCC-Cccch
Q psy8923          80 NIK-QIPDA   87 (273)
Q Consensus        80 ~l~-~ip~~   87 (273)
                      +|+ .||..
T Consensus       715 ~l~g~iP~~  723 (768)
T 3rgz_A          715 NLSGPIPEM  723 (768)
T ss_dssp             EEEEECCSS
T ss_pred             cccccCCCc
Confidence            999 88874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.21  E-value=6e-11  Score=92.71  Aligned_cols=65  Identities=25%  Similarity=0.265  Sum_probs=53.4

Q ss_pred             CccEEEccCCCCCCchh-hhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccchh
Q psy8923          22 LTEHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                      +|++|+|++|+|+++|+ .|..+++|+.|+|++|+|+.  +|.. +..+++|+.|+|++|++...+..+
T Consensus        58 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~~~c~~~~~  124 (174)
T 2r9u_A           58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS--IPRGAFDNLKSLTHIYLYNNPWDCECRDI  124 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred             CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce--eCHHHhccccCCCEEEeCCCCcccccccH
Confidence            44779999999999874 57889999999999999997  7765 668899999999999998766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=5.5e-11  Score=92.52  Aligned_cols=67  Identities=31%  Similarity=0.450  Sum_probs=58.4

Q ss_pred             CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccchhh
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      .+|++|+|++|+|+++ |..|..+++|++|+|++|+|+.  +|..+ ..+++|+.|+|++|+|+.+|...+
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~   98 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV--LPAGVFDKLTQLTQLSLNDNQLKSIPRGAF   98 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc--cChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence            5678899999999998 4779999999999999999998  77765 589999999999999998887533

>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*

Probab=99.19  E-value=2.9e-12  Score=96.20  Aligned_cols=115  Identities=24%  Similarity=0.339  Sum_probs=87.7

Q ss_pred             hhhcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecc-c-CCCCCccchhhhhhhcccccchhccccccccchhh
Q psy8923          38 GELTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLS-H-NNIKQIPDALENAKRTKATLDKRACSAIHAVNLRN  113 (273)
Q Consensus        38 ~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls-~-N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~  113 (273)
                      ...++-+.|+...+.+-....  +|+... .+ ..=.++-|. + ..-......||.|+|.+++.++.+.+++.+.+|++
T Consensus        31 ~~~g~~~gl~VWrIe~~~~v~--vp~~~~G~FysgD~YIVl~ty~~~~g~~~~~IyfW~G~~ss~de~gaAA~~aveLd~  108 (150)
T 2ff3_A           31 LKAGKEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDD  108 (150)
T ss_dssp             HHTTSSSEEEEEEEETTEEEE--CCGGGTTEEETTSEEEEEEEEECTTSSEEEEEEEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCeEEEEEeCCEEEE--CChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEeCCCCCchhHHHHHHHHHHHHH
Confidence            345556778888888766665  776432 11 111122221 1 11114456799999999999999999999999999


Q ss_pred             hhhhhhhhcccccCCCchhhHhhccCCcEEecCCccccccee
Q psy8923         114 FLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGFFT  155 (273)
Q Consensus       114 ~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~~  155 (273)
                      .+++.++|+|+.||+||++|+++|++++++++|+ ..++|++
T Consensus       109 ~lgg~~vQ~Re~QG~Ep~~Fl~lFkg~iii~~GG-~~Sgf~~  149 (150)
T 2ff3_A          109 YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGFKH  149 (150)
T ss_dssp             HTTTCCEEEEEETTCCCHHHHHTCTTCCEEESCC-CCCCCBC
T ss_pred             HcCCCceEEEeECCCCCHHHHHHhcCCeEEEeCC-cCCcccc
Confidence            9999999999999999999999999999999999 8888875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.19  E-value=1.1e-10  Score=95.17  Aligned_cols=68  Identities=31%  Similarity=0.444  Sum_probs=60.2

Q ss_pred             CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccchhhh
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      ++|++|+|++|.|+++ |..|..+++|+.|+|++|+|+.  +|... ..+++|+.|+|++|+|+.+|...+.
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  109 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD  109 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCcCCccChhHhC
Confidence            5789999999999997 5889999999999999999998  87664 5899999999999999998876543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=3.1e-11  Score=104.44  Aligned_cols=77  Identities=22%  Similarity=0.210  Sum_probs=64.0

Q ss_pred             CCccccCCCCCceecCCCccEEEccC-CCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923           5 EPGTFCMASKSESVTIGLTEHLSIVN-NNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus         5 ~p~~~~~~~~l~~~~l~~l~~L~l~~-N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      +|. |+.+++|        ++|+|++ |.|+++| ..|++|++|+.|+|++|+|++ ..|..|.+|++|+.|+|++|+|+
T Consensus        24 ip~-l~~~~~L--------~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~   93 (347)
T 2ifg_A           24 LHH-LPGAENL--------TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNALE   93 (347)
T ss_dssp             TTT-SCSCSCC--------SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cCC-CCCCCCe--------eEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCccc
Confidence            555 5555554        7799996 9999987 789999999999999999998 34445679999999999999999


Q ss_pred             Cccchhhhh
Q psy8923          83 QIPDALENA   91 (273)
Q Consensus        83 ~ip~~l~~w   91 (273)
                      .+|..++..
T Consensus        94 ~~~~~~~~~  102 (347)
T 2ifg_A           94 SLSWKTVQG  102 (347)
T ss_dssp             CCCSTTTCS
T ss_pred             eeCHHHccc
Confidence            999876653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.18  E-value=1.3e-10  Score=95.89  Aligned_cols=65  Identities=31%  Similarity=0.484  Sum_probs=43.3

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccchh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                      +|++|+|++|.|++++ ..|..+++|++|+|++|+|+.  +|.. +..+++|+.|+|++|+|+.+|...
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  126 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--LPLGVFDHLTQLDKLYLGGNQLKSLPSGV  126 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc--cChhHhcccCCCCEEEcCCCcCCCcChhH
Confidence            4466777777777764 456777777777777777776  5543 446777777777777777666543

>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*

Probab=99.18  E-value=3.3e-12  Score=93.81  Aligned_cols=112  Identities=25%  Similarity=0.372  Sum_probs=84.4

Q ss_pred             hhcCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecc-c-CCCCCccchhhhhhhcccccchhccccccccchhhh
Q psy8923          39 ELTELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLS-H-NNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNF  114 (273)
Q Consensus        39 ~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls-~-N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~  114 (273)
                      ..++-+.|+...+.+.....  +|+... .+ ..=.++-|. + ..-......+|.|+|.+++.++.+.+++.+.+|++.
T Consensus        13 ~~g~~~gl~vWrIe~~~~~~--vp~~~~G~Fy~gd~YIvl~ty~~~~g~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~   90 (128)
T 3cip_G           13 KAGKEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDY   90 (128)
T ss_dssp             HTTSSSEEEEEEEETTEEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCeEEEEEeCCEEEE--CChHHcCeecCCCeEEEEEEEecCCCceEEEEEEEcCCCCCcchHHHHHHHHHHHHHH
Confidence            34556678888887666665  776432 11 111122221 1 111144567999999999999999999999999999


Q ss_pred             hhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccc
Q psy8923         115 LAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF  153 (273)
Q Consensus       115 l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~  153 (273)
                      +++.++|+|+.||+||++|+++|++++++++|+ ..++|
T Consensus        91 lgg~~vq~R~~QG~E~~~Fl~~F~~~iii~~Gg-~~sgf  128 (128)
T 3cip_G           91 LNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGF  128 (128)
T ss_dssp             TTTCEEEEEEETTCCCHHHHTTCTTCCEEESCC-CCCCC
T ss_pred             cCCCceEEEeECCCCCHHHHHHhCCCeEEEECC-cCCCC
Confidence            999999999999999999999999999999999 77764

>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A

Probab=99.16  E-value=2.5e-12  Score=94.19  Aligned_cols=70  Identities=29%  Similarity=0.467  Sum_probs=65.5

Q ss_pred             CccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCCcEEecCCcccccc
Q psy8923          83 QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF  153 (273)
Q Consensus        83 ~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~  153 (273)
                      .....+|.|+|.+++.++.+.+++.+.+|++.+++.|+|+|+.||+||++|+++|++++++++|+ ..+++
T Consensus        56 ~~~~~i~~W~G~~ss~de~g~Aa~~aveLd~~lgg~~vq~R~~QG~E~~~Fl~~F~~~iii~~Gg-~~sgf  125 (126)
T 2vik_A           56 GFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG-VASGM  125 (126)
T ss_dssp             SEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTSCSCEEEEETTTSHHHHHHHCSSCCCCCCSC-TTCSC
T ss_pred             ceeEEEEEEeCCCCCchhHHHHHHHHHHHHHHcCCCccEEEEECCCCCHHHHHHcCCCeEEEECc-ccCCC
Confidence            44567999999999999999999999999999999999999999999999999999999999999 88776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.16  E-value=1.2e-10  Score=96.25  Aligned_cols=84  Identities=27%  Similarity=0.369  Sum_probs=60.9

Q ss_pred             CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923           2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD   64 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~   64 (273)
                      .+..|..|+.+++|+.+.+                ++|++|+|++|.|+.+| ..|..+++|++|+|++|+|+.  +|..
T Consensus        48 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~  125 (251)
T 3m19_A           48 ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS--LPSG  125 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTT
T ss_pred             CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC--cChh
Confidence            3445556666666666533                36778888888888876 567788888888888888887  6655


Q ss_pred             c-cCCCCCCEEecccCCCCCccch
Q psy8923          65 L-FHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        65 ~-~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      . ..+++|+.|+|++|+|+.+|..
T Consensus       126 ~~~~l~~L~~L~Ls~N~l~~~~~~  149 (251)
T 3m19_A          126 VFDRLTKLKELRLNTNQLQSIPAG  149 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             HhccCCcccEEECcCCcCCccCHH
Confidence            4 5778888888888888877763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.16  E-value=3.6e-11  Score=93.13  Aligned_cols=73  Identities=33%  Similarity=0.396  Sum_probs=45.0

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      |.+|..++.+++|        ++|+|++|.|+.+ ..+..+++|++|+|++|+++. .+|..+.++++|+.|+|++|+++
T Consensus        39 ~~i~~~~~~l~~L--------~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~  108 (168)
T 2ell_A           39 GKIEGLTAEFVNL--------EFLSLINVGLISV-SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLK  108 (168)
T ss_dssp             TBCSSCCGGGGGC--------CEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCC
T ss_pred             hhHHHHHHhCCCC--------CEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccC
Confidence            4667777666666        4466666666666 556666666666666666664 34444445666666666666666


Q ss_pred             Ccc
Q psy8923          83 QIP   85 (273)
Q Consensus        83 ~ip   85 (273)
                      .+|
T Consensus       109 ~~~  111 (168)
T 2ell_A          109 DIS  111 (168)
T ss_dssp             SSG
T ss_pred             cch
Confidence            554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=1.5e-10  Score=90.03  Aligned_cols=74  Identities=31%  Similarity=0.383  Sum_probs=57.3

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCC
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNN   80 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~   80 (273)
                      +..|..|..+++|        ++|+|++|+|+++| ..|..+++|+.|+|++|+|++  +|.. +..+++|+.|+|++|+
T Consensus        44 ~~~~~~~~~l~~L--------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           44 KLEPGVFDRLTQL--------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS--IPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCTTTTTTCTTC--------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred             ccChhhhcCcccC--------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCE--eCHHHhcCCCCCCEEEeCCCC
Confidence            3344445555444        77999999999987 557899999999999999997  7765 6688999999999999


Q ss_pred             CCCccc
Q psy8923          81 IKQIPD   86 (273)
Q Consensus        81 l~~ip~   86 (273)
                      ++..+.
T Consensus       114 ~~c~c~  119 (170)
T 3g39_A          114 WDCACS  119 (170)
T ss_dssp             BCTTBG
T ss_pred             CCCCch
Confidence            985443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=94.35  Aligned_cols=62  Identities=26%  Similarity=0.312  Sum_probs=36.7

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI   84 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~i   84 (273)
                      +|++|+|++|.|+++| ..|..+++|++|+|++|+|++ ..|..+.++++|+.|+|++|+|+.+
T Consensus        82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred             CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEE
Confidence            4555666666666654 446666666666666666665 3344555666666666666666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.14  E-value=1.9e-10  Score=97.19  Aligned_cols=63  Identities=27%  Similarity=0.410  Sum_probs=32.5

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCC-ccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIP-VDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|+|+.+|..+..+++|++|+|++|+|+.  +| ..+.++++|+.|+|++|+|+.+|.
T Consensus        78 ~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~~~~  141 (290)
T 1p9a_G           78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS--LPLGALRGLGELQELYLKGNELKTLPP  141 (290)
T ss_dssp             TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCC--CCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcc--cCHHHHcCCCCCCEEECCCCCCCccCh
Confidence            4555555555555555555555555555555555554  33 233355555555555555554444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.12  E-value=4.5e-11  Score=113.38  Aligned_cols=68  Identities=25%  Similarity=0.362  Sum_probs=46.9

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENA   91 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w   91 (273)
                      +|++|+|++|.|+.||..|++|++|++|+|++|+|+.  ||..+++|++|+.|+|++|+|+.||..+..+
T Consensus       248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l  315 (727)
T 4b8c_D          248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFDNMVTTLPWEFGNL  315 (727)
T ss_dssp             SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECCSSCCCCCCSSTTSC
T ss_pred             CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECCCCCCCccChhhhcC
Confidence            5566777777777777667777777777777777776  6777777777777777777777777655443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.12  E-value=3e-10  Score=90.99  Aligned_cols=64  Identities=30%  Similarity=0.485  Sum_probs=39.8

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccch
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      +|++|+|++|+|+.+| ..|..+++|++|+|++|+++.  +|.. +..+++|+.|+|++|+++.+|..
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A           53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS--LPNGVFDKLTQLKELALNTNQLQSLPDG  118 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc--cCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence            3455666666666665 345666666666666666665  5444 34666666666666666665553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.11  E-value=3e-10  Score=97.65  Aligned_cols=69  Identities=20%  Similarity=0.312  Sum_probs=60.5

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN   90 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~   90 (273)
                      +++|++|+|++|.|+.+|..++.+++|+.|+|++|++++  +|..+..+++|+.|+|++|++. .+|..+..
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~  251 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGG  251 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcC
Confidence            567888999999999999889999999999999999998  8988889999999999998887 77765543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.11  E-value=1.2e-10  Score=107.28  Aligned_cols=65  Identities=29%  Similarity=0.433  Sum_probs=48.1

Q ss_pred             ccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCc--cchhhh
Q psy8923          23 TEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI--PDALEN   90 (273)
Q Consensus        23 l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~i--p~~l~~   90 (273)
                      |+.|+|++|.|+.||..|+.|++|+.|+|++|+|++  +| .+.++++|+.|+|++|+|+.+  |..+..
T Consensus       465 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~  531 (567)
T 1dce_A          465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS  531 (567)
T ss_dssp             CCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred             CcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence            355777777777777777777777777777777776  77 677777777777777777766  555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.11  E-value=2.4e-10  Score=89.24  Aligned_cols=63  Identities=30%  Similarity=0.481  Sum_probs=29.6

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|+.|+|++|.|+++| ..|..+++|++|++++|+|+.  +|.. +..+++|+.|+|++|+|+.+|.
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~   93 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS--LPDGVFDKLTKLTILYLHENKLQSLPN   93 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE--eChhHccCCCccCEEECCCCCccccCH
Confidence            3444555555555444 234445555555555555544  3333 2344555555555555554443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.11  E-value=1e-10  Score=108.55  Aligned_cols=79  Identities=24%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             cCCCCCceecC---CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCCCc
Q psy8923          10 CMASKSESVTI---GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIKQI   84 (273)
Q Consensus        10 ~~~~~l~~~~l---~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~~i   84 (273)
                      |.-.+|..+|-   +++++|||++|+|++|| .+|.++++|++|+|++|+|+.  ||+ +|.+|++|++|+|++|+|+.+
T Consensus        38 c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           38 CMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             CTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCC
Confidence            44456777763   48999999999999997 689999999999999999998  766 466999999999999999999


Q ss_pred             cchhhh
Q psy8923          85 PDALEN   90 (273)
Q Consensus        85 p~~l~~   90 (273)
                      |...+.
T Consensus       116 ~~~~f~  121 (635)
T 4g8a_A          116 ALGAFS  121 (635)
T ss_dssp             CGGGGT
T ss_pred             CHHHhc
Confidence            876543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.09  E-value=2.3e-10  Score=90.73  Aligned_cols=58  Identities=29%  Similarity=0.368  Sum_probs=29.6

Q ss_pred             ccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCC
Q psy8923          23 TEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        23 l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~   82 (273)
                      |++|+|++|.|+++ |..|..+++|+.|+|++|+|++  +|. .+.++++|+.|+|++|+|+
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--ISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE--ECSSSSTTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCc--cCHHHhcCCCCCCEEECCCCcCC
Confidence            34455555555554 3445555555555555555554  332 2345555555555555555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.09  E-value=4.3e-10  Score=91.12  Aligned_cols=69  Identities=23%  Similarity=0.365  Sum_probs=58.8

Q ss_pred             CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      ++|+.|+|++|.|+.+| ..|..+++|+.|+|++|+|+. ..|..+.++++|+.|+|++|+|+.+|..++.
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~  101 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITELPKSLFE  101 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence            46788999999999987 578999999999999999997 4477788999999999999999988876543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.09  E-value=4.8e-10  Score=89.02  Aligned_cols=65  Identities=25%  Similarity=0.326  Sum_probs=59.3

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCC-ccccCCCCCCEEecccCCCCCccch
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIP-VDLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip-~~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      ++|+.|+|++|.|+.+|..|..+++|+.|+|++|+|+.  ++ ..+.++++|+.|+|++|+|+.+|..
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   96 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST--LSNQSFSNMTQLLTLILSYNRLRCIPPR   96 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE--eCHhHccCCCCCCEEECCCCccCEeCHH
Confidence            47799999999999999999999999999999999998  65 4577999999999999999988764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.07  E-value=1.8e-10  Score=91.29  Aligned_cols=76  Identities=25%  Similarity=0.341  Sum_probs=64.3

Q ss_pred             ccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCC
Q psy8923           9 FCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDL   71 (273)
Q Consensus         9 ~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L   71 (273)
                      |+.+++|+.+.+                ++|++|+|++|+|++++ ..|..+++|++|+|++|+|++ .+|..+..+++|
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  128 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSL  128 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTC
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCC
Confidence            666666666533                36788999999999986 669999999999999999997 567788899999


Q ss_pred             CEEecccCCCC-Ccc
Q psy8923          72 TTLDLSHNNIK-QIP   85 (273)
Q Consensus        72 ~~L~Ls~N~l~-~ip   85 (273)
                      +.|+|++|+++ ..+
T Consensus       129 ~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          129 TSLNLASNPFNCNCH  143 (192)
T ss_dssp             CEEECTTCCBCCSGG
T ss_pred             CEEEeCCCCccCcCc
Confidence            99999999999 554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.06  E-value=3.9e-10  Score=95.28  Aligned_cols=66  Identities=33%  Similarity=0.452  Sum_probs=33.4

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      +|++|+|++|+|+.+| ..|..+++|+.|+|++|+|+.  +|..++ .+++|+.|+|++|+|+.+|..++
T Consensus       125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~  192 (290)
T 1p9a_G          125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPKGFF  192 (290)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccChhhc
Confidence            3444555555555544 334455555555555555554  444332 45555555555555555555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.05  E-value=2.7e-10  Score=105.04  Aligned_cols=67  Identities=25%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCC-CccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGI-PVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~i-p~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +|+.|+|++|.|++|| .|+.|++|+.|+|++|+|++ .. |..+..+++|+.|+|++|+|+.+|+.+..
T Consensus       487 ~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  554 (567)
T 1dce_A          487 CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER  554 (567)
T ss_dssp             TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred             CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence            6788999999999999 89999999999999999998 33 89999999999999999999988775544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.05  E-value=9.5e-11  Score=100.10  Aligned_cols=87  Identities=22%  Similarity=0.322  Sum_probs=55.2

Q ss_pred             CCCccccCCCCCceecC-----------------CCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccc
Q psy8923           4 FEPGTFCMASKSESVTI-----------------GLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDL   65 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l-----------------~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~   65 (273)
                      .+|..|+.+++|+.+.+                 ++|++|+|++|.|++ +|..|..+++|++|+|++|++++ .+|..+
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~  145 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPPSI  145 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCGGG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-cCChHH
Confidence            56666666666644321                 245667777777764 56666677777777777777763 466666


Q ss_pred             cCCCCCCEEecccCCCC-Cccchhhhh
Q psy8923          66 FHLEDLTTLDLSHNNIK-QIPDALENA   91 (273)
Q Consensus        66 ~~l~~L~~L~Ls~N~l~-~ip~~l~~w   91 (273)
                      ..+++|++|+|++|+++ .+|..+..+
T Consensus       146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l  172 (313)
T 1ogq_A          146 SSLPNLVGITFDGNRISGAIPDSYGSF  172 (313)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred             hcCCCCCeEECcCCcccCcCCHHHhhh
Confidence            66777777777777776 666655543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.04  E-value=4.4e-10  Score=96.60  Aligned_cols=69  Identities=22%  Similarity=0.137  Sum_probs=61.8

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~   90 (273)
                      ++|++|+|++|.|+++|+.++.+++|+.|+|++|++.+ .+|..+.++++|+.|+|++|++. .+|..+..
T Consensus       206 ~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~  275 (328)
T 4fcg_A          206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR  275 (328)
T ss_dssp             TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred             CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence            37788999999999999899999999999999999885 79999999999999999998877 88877654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.04  E-value=5e-10  Score=90.71  Aligned_cols=61  Identities=23%  Similarity=0.340  Sum_probs=30.6

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQI   84 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~i   84 (273)
                      +|++|+|++|.|++++ ..|..+++|+.|+|++|+|++  +|.. +.++++|+.|+|++|+|+.+
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~  120 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN--VQHKMFKGLESLKTLMLRSNRITCV  120 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCC--CCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred             CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCc--cCHhHhcCCcCCCEEECCCCcCCeE
Confidence            3444555555555543 345555555555555555554  3332 33555555555555555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.02  E-value=1.2e-09  Score=91.35  Aligned_cols=64  Identities=34%  Similarity=0.543  Sum_probs=41.6

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccch
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      +|++|+|++|.|+++| ..|+.+++|++|+|++|++++  +|.. +..+++|+.|+|++|+++.+|..
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~  175 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS--LPKGVFDKLTNLTELDLSYNQLQSLPEG  175 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCc--cCHHHhccCccCCEEECCCCCcCccCHH
Confidence            4566777777777765 446667777777777777775  5444 34667777777777777765553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.02  E-value=2.1e-10  Score=108.87  Aligned_cols=84  Identities=18%  Similarity=0.154  Sum_probs=69.7

Q ss_pred             CCCccccCCCCCceecC---------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCC
Q psy8923           4 FEPGTFCMASKSESVTI---------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHL   68 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l---------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l   68 (273)
                      .+|..++.+++|+.+.+               ++|++|+|++|.|+.||..|+.|++|++|+|++|.|+.  ||..+.+|
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l  315 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTT--LPWEFGNL  315 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCC--CCSSTTSC
T ss_pred             CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCc--cChhhhcC
Confidence            35555555555555432               26688999999999999999999999999999999998  99999999


Q ss_pred             CCCCEEecccCCCC-Cccchhh
Q psy8923          69 EDLTTLDLSHNNIK-QIPDALE   89 (273)
Q Consensus        69 ~~L~~L~Ls~N~l~-~ip~~l~   89 (273)
                      ++|+.|+|++|+|+ .+|..+.
T Consensus       316 ~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          316 CNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             TTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCccEEeCCCCccCCCChHHHh
Confidence            99999999999999 5565553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.01  E-value=4.9e-10  Score=97.58  Aligned_cols=66  Identities=29%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                      +|++|+|++|+|+.+| ..|..+++|+.|+|++|+|+. ..|..+.++++|+.|+|++|+|+.+|..+
T Consensus        89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence            4455555555555554 345555555555555555554 22334445555666666666655555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.01  E-value=1.4e-09  Score=90.79  Aligned_cols=64  Identities=28%  Similarity=0.452  Sum_probs=49.2

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccch
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      +|++|+|++|.|+.+| ..|..+++|++|+|++|+|+.  +|.. +..+++|+.|+|++|+++.+|..
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCCcCcEeChh
Confidence            6778888888888876 557788888888888888887  6655 45778888888888888877664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.01  E-value=9.9e-10  Score=92.23  Aligned_cols=83  Identities=25%  Similarity=0.398  Sum_probs=59.6

Q ss_pred             CccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccC
Q psy8923           6 PGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFH   67 (273)
Q Consensus         6 p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~   67 (273)
                      |..|..+++|+.+.+                ++|++|+|++|.|+.+| ..|..+++|+.|+|++|+++.  +|.. +..
T Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~  175 (285)
T 1ozn_A           98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRG  175 (285)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--ECTTTTTT
T ss_pred             HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--cCHHHhcC
Confidence            556666666665532                36778888888888876 457888888888888888887  6654 567


Q ss_pred             CCCCCEEecccCCCCCc-cchhhh
Q psy8923          68 LEDLTTLDLSHNNIKQI-PDALEN   90 (273)
Q Consensus        68 l~~L~~L~Ls~N~l~~i-p~~l~~   90 (273)
                      +++|+.|+|++|+++.+ |..+..
T Consensus       176 l~~L~~L~l~~n~l~~~~~~~~~~  199 (285)
T 1ozn_A          176 LHSLDRLLLHQNRVAHVHPHAFRD  199 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ccccCEEECCCCcccccCHhHccC
Confidence            88888888888888855 444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.99  E-value=8.2e-10  Score=98.72  Aligned_cols=84  Identities=25%  Similarity=0.358  Sum_probs=49.8

Q ss_pred             CCCCccccCCCCCceecC----------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc
Q psy8923           3 GFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL   65 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~   65 (273)
                      +.+|..|+.+++|+.+.+                ++|++|+|++|.|+++ |..|..+++|+.|+|++|+++. ..|..+
T Consensus       289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~  367 (455)
T 3v47_A          289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSF  367 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE-ECTTTT
T ss_pred             ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc-cChhhc
Confidence            345666777776655432                2556666666666654 3556666666666666666665 334555


Q ss_pred             cCCCCCCEEecccCCCCCccch
Q psy8923          66 FHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        66 ~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      .++++|+.|+|++|+++.+|..
T Consensus       368 ~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          368 LGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccccccEEECCCCccccCCHh
Confidence            5666666666666666655553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.98  E-value=9.6e-10  Score=101.93  Aligned_cols=89  Identities=21%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc-hhhhhhhcccccc
Q psy8923          22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD-ALENAKRTKATLD   99 (273)
Q Consensus        22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~-~l~~w~g~~~~~~   99 (273)
                      +|++|+|++|+|+++ |..|.+|++|+.|+|++|+|++ ..|..+.++++|+.|+|++|+|+.++. .+..+......++
T Consensus       495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred             ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC-CChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence            568899999999997 5789999999999999999997 334456689999999999999996654 4443322223333


Q ss_pred             hhccccccccch
Q psy8923         100 KRACSAIHAVNL  111 (273)
Q Consensus       100 ~~~~~~l~~~~L  111 (273)
                      ..+++..|..++
T Consensus       574 L~~Np~~C~C~~  585 (635)
T 4g8a_A          574 LTQNDFACTCEH  585 (635)
T ss_dssp             CTTCCBCCSGGG
T ss_pred             eeCCCCcccCCc
Confidence            334444444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.97  E-value=6.3e-10  Score=85.99  Aligned_cols=64  Identities=31%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             CCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCC--ccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIP--VDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip--~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|+|++|.|++ +|..+..+++|++|+|++|+++.  +|  ..+..+++|+.|++++|+++.+|.
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS--SGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc--chhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            455889999999999 77888889999999999999998  77  678899999999999999998886

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.97  E-value=2.2e-09  Score=89.49  Aligned_cols=64  Identities=31%  Similarity=0.472  Sum_probs=43.7

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccch
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      +|++|+|++|.|+.+| ..|..+++|++|+|++|+++.  +|... ..+++|+.|+|++|+++.+|..
T Consensus        62 ~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~  127 (270)
T 2o6q_A           62 KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA--LPIGVFDQLVNLAELRLDRNQLKSLPPR  127 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC--CCTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc--CCHhHcccccCCCEEECCCCccCeeCHH
Confidence            4566777777777776 445677777777777777776  55443 4677777777777777766653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.97  E-value=9e-10  Score=95.89  Aligned_cols=83  Identities=27%  Similarity=0.390  Sum_probs=70.5

Q ss_pred             CCCCccccCCCCCceecC----------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccc
Q psy8923           3 GFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDL   65 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~   65 (273)
                      +..|..|..+++|+.+.+                ++|++|+|++|.|+.+ |..|..+++|+.|+|++|+|+.  +|..+
T Consensus        78 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~  155 (361)
T 2xot_A           78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVEL  155 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGG
T ss_pred             ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHH
Confidence            344567888888877643                3889999999999998 5889999999999999999998  99876


Q ss_pred             c----CCCCCCEEecccCCCCCccch
Q psy8923          66 F----HLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        66 ~----~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      +    .+++|+.|+|++|+|+.+|..
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~  181 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLT  181 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHH
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHH
Confidence            4    689999999999999999853

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.96  E-value=6.9e-10  Score=86.57  Aligned_cols=62  Identities=31%  Similarity=0.408  Sum_probs=37.1

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|.|+++ +.|+.+++|++|+|++|+|+.  +|+.+ ..+++|+.|+|++|+++.+|.
T Consensus        43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~  105 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLVELGD  105 (176)
T ss_dssp             CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcCCcchh
Confidence            455566666666655 455566666666666666665  55444 456666666666666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.95  E-value=9e-10  Score=102.08  Aligned_cols=65  Identities=26%  Similarity=0.290  Sum_probs=30.1

Q ss_pred             CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923          22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      +|+.|+|++|.|+++ |..|..+++|+.|+|++|++++ .+|..+.++++|+.|+|++|+|+.+|..
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~p~~  539 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGI  539 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-EEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC-cCHHHccCCCcCCEEECCCCcCcccCHh
Confidence            344444444444443 2344444444444444444443 2244444444444444444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.94  E-value=3.6e-10  Score=105.70  Aligned_cols=80  Identities=15%  Similarity=0.149  Sum_probs=69.1

Q ss_pred             CCCCCccccCCCCCceecCCCccEEEccCCCCCC------------------chhhhc--CCccCCEeeccCCcCccCCC
Q psy8923           2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK------------------LFGELT--ELQCLRTLNLRYNKIKNSGI   61 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~------------------lp~~~~--~l~~L~~L~l~~N~l~~~~i   61 (273)
                      +| +|..|+++++|        ++|+|++|.|++                  +|..++  ++++|++|+|++|++.+ .+
T Consensus       196 ~~-ip~~l~~l~~L--------~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~  265 (636)
T 4eco_A          196 TF-VSKAVMRLTKL--------RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KL  265 (636)
T ss_dssp             EE-ECGGGGGCTTC--------CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SC
T ss_pred             cc-CCHHHhcccCC--------CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cC
Confidence            35 78888888777        669999999999                  999888  99999999999999885 89


Q ss_pred             CccccCCCCCCEEecccCC-CC--Cccchhhhh
Q psy8923          62 PVDLFHLEDLTTLDLSHNN-IK--QIPDALENA   91 (273)
Q Consensus        62 p~~~~~l~~L~~L~Ls~N~-l~--~ip~~l~~w   91 (273)
                      |..++++++|+.|+|++|+ ++  .+|..++.+
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L  298 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLKDDWQAL  298 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHH
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccchHHHHhh
Confidence            9999999999999999998 88  488877764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.94  E-value=6.4e-10  Score=94.94  Aligned_cols=75  Identities=23%  Similarity=0.206  Sum_probs=37.0

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCC
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI   81 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l   81 (273)
                      |.+|..|+.++ |        ++|+|++|.|++ +|..|..+++|+.|+|++|++++  .++.+..+++|+.|+|++|++
T Consensus       188 ~~~~~~~~~l~-L--------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          188 GKIPPTFANLN-L--------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF--DLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             EECCGGGGGCC-C--------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC--BGGGCCCCTTCCEEECCSSCC
T ss_pred             ccCChHHhCCc-c--------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee--ecCcccccCCCCEEECcCCcc
Confidence            45677776664 4        335555555543 23444455555555555555543  222344445555555555555


Q ss_pred             C-Cccchh
Q psy8923          82 K-QIPDAL   88 (273)
Q Consensus        82 ~-~ip~~l   88 (273)
                      + .+|..+
T Consensus       257 ~~~~p~~l  264 (313)
T 1ogq_A          257 YGTLPQGL  264 (313)
T ss_dssp             EECCCGGG
T ss_pred             cCcCChHH
Confidence            4 444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.93  E-value=4.4e-09  Score=88.26  Aligned_cols=83  Identities=27%  Similarity=0.385  Sum_probs=70.2

Q ss_pred             CCCCccccCCCCCceecC-----------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923           3 GFEPGTFCMASKSESVTI-----------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVD   64 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l-----------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~   64 (273)
                      +..|..|+.+++|+.+.+                 ++|++|+|++|.|+++ |..|..+++|++|++++|+++.  +|..
T Consensus        70 ~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~  147 (285)
T 1ozn_A           70 RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA--LPDD  147 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTT
T ss_pred             eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc--cCHh
Confidence            445777887777776533                 4899999999999997 4789999999999999999998  6655


Q ss_pred             -ccCCCCCCEEecccCCCCCccch
Q psy8923          65 -LFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        65 -~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                       +..+++|+.|+|++|+++.+|..
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTT
T ss_pred             HhccCCCccEEECCCCcccccCHH
Confidence             66899999999999999988874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.93  E-value=4.1e-10  Score=105.29  Aligned_cols=60  Identities=20%  Similarity=0.234  Sum_probs=53.5

Q ss_pred             CCCCchhhhcCCccCCEeeccCCcCccCC-----------------CCcccc--CCCCCCEEecccCCCC-Cccchhhhh
Q psy8923          32 NLEKLFGELTELQCLRTLNLRYNKIKNSG-----------------IPVDLF--HLEDLTTLDLSHNNIK-QIPDALENA   91 (273)
Q Consensus        32 ~l~~lp~~~~~l~~L~~L~l~~N~l~~~~-----------------ip~~~~--~l~~L~~L~Ls~N~l~-~ip~~l~~w   91 (273)
                      .|++||..|+++++|++|+|++|++++ .                 +|..++  ++++|++|+|++|+++ .+|..+..+
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPFVA-ENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCG-GGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCccCCHHHhcccCCCEEECcCCcccc-ccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            455689999999999999999999995 6                 999999  9999999999999988 899877764


Q ss_pred             h
Q psy8923          92 K   92 (273)
Q Consensus        92 ~   92 (273)
                      .
T Consensus       273 ~  273 (636)
T 4eco_A          273 P  273 (636)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=1.2e-09  Score=105.26  Aligned_cols=66  Identities=26%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             CccEEEccCCCCCCchh--hhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLEKLFG--ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~--~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +|++|+|++|.|+.||.  .|+++++|+.|+|++|+++.  +| .+..+++|+.|+|++|+++.+|..+..
T Consensus       549 ~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~  616 (876)
T 4ecn_A          549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVKLTDLKLDYNQIEEIPEDFCA  616 (876)
T ss_dssp             TCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSEESEEECCSSCCSCCCTTSCE
T ss_pred             CccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCcceEEECcCCccccchHHHhh
Confidence            35555555555555554  55555555555555555554  55 445555555555555555555544433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.93  E-value=3.7e-09  Score=84.56  Aligned_cols=84  Identities=25%  Similarity=0.414  Sum_probs=69.3

Q ss_pred             CCCCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-
Q psy8923           3 GFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-   64 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-   64 (273)
                      +..|..|..+++|+.+.+                ++|++|+|++|.|+++| ..|..+++|++|+|++|+|+.  +|.. 
T Consensus        42 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~  119 (208)
T 2o6s_A           42 SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS--LPDGV  119 (208)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTT
T ss_pred             cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc--cCHhH
Confidence            344555677777766643                37899999999999987 558999999999999999998  7765 


Q ss_pred             ccCCCCCCEEecccCCCCCccchh
Q psy8923          65 LFHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        65 ~~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                      +..+++|+.|+|++|+++.+|...
T Consensus       120 ~~~l~~L~~L~l~~N~l~~~~~~~  143 (208)
T 2o6s_A          120 FDKLTQLKDLRLYQNQLKSVPDGV  143 (208)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             hccCCcCCEEECCCCccceeCHHH
Confidence            568999999999999999888754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.92  E-value=2.9e-09  Score=82.96  Aligned_cols=76  Identities=29%  Similarity=0.462  Sum_probs=62.4

Q ss_pred             CCCccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCC
Q psy8923           4 FEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNI   81 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l   81 (273)
                      ..|..|+.+++|        ++|+|++|.|+++| ..|..+++|+.|+|++|+|++  +|.. +..+++|+.|+|++|++
T Consensus        43 ~~~~~~~~l~~L--------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           43 LPHGVFDKLTQL--------TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS--LPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             CCTTTTTTCTTC--------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCC
T ss_pred             eCHHHhcCcccc--------cEEECCCCcceEeChhHccCCCccCEEECCCCCccc--cCHHHhhCCcccCEEECcCCcc
Confidence            334445565555        77999999999987 557999999999999999998  7665 56899999999999999


Q ss_pred             CCccchhh
Q psy8923          82 KQIPDALE   89 (273)
Q Consensus        82 ~~ip~~l~   89 (273)
                      +.+|..++
T Consensus       113 ~~~~~~~~  120 (177)
T 2o6r_A          113 KSVPDGIF  120 (177)
T ss_dssp             SCCCTTTT
T ss_pred             eEeCHHHh
Confidence            99887654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=1.7e-09  Score=93.41  Aligned_cols=80  Identities=20%  Similarity=0.162  Sum_probs=63.8

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCC
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI   81 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l   81 (273)
                      +..|..|+.+++|        ++|+|++|+|+++| ..|.+|++|+.|+|++|+|+.  +|..++....|+.|+|++|+|
T Consensus        46 ~~~~~~~~~l~~L--------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           46 HLELRDLRGLGEL--------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             EECGGGSCSCCCC--------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSCCCCEEECCSSCC
T ss_pred             CcChhHhccccCC--------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce--eCHHHcccCCceEEEeeCCCc
Confidence            3445566666666        67999999999986 689999999999999999998  888877555599999999999


Q ss_pred             CCccc--hhhhhh
Q psy8923          82 KQIPD--ALENAK   92 (273)
Q Consensus        82 ~~ip~--~l~~w~   92 (273)
                      .....  .+..|.
T Consensus       116 ~c~c~l~~~~~~~  128 (347)
T 2ifg_A          116 HCSCALRWLQRWE  128 (347)
T ss_dssp             CCCGGGHHHHHHH
T ss_pred             cCCCccHHHHHHH
Confidence            94433  344454

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.90  E-value=4.7e-09  Score=87.67  Aligned_cols=64  Identities=20%  Similarity=0.198  Sum_probs=42.9

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|.|+.++ ..|..+++|++|+|++|+++. ..|..+.++++|+.|++++|+++.++.
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~  117 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLEN  117 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccccEEECCCCCccccCc
Confidence            4566777777777765 467777777777777777776 223455567777777777777765554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.90  E-value=1.1e-09  Score=93.25  Aligned_cols=64  Identities=20%  Similarity=0.290  Sum_probs=31.1

Q ss_pred             CccEEEccCCCCCCchh----hhcCCccCCEeeccCCcCccCCCCccccCC---CCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLFG----ELTELQCLRTLNLRYNKIKNSGIPVDLFHL---EDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~----~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l---~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|+|+.+|.    .++.+++|++|+|++|+|++ .+|..+..+   ++|+.|+|++|+|+.+|.
T Consensus       198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~  268 (310)
T 4glp_A          198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPK  268 (310)
T ss_dssp             CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCS
T ss_pred             CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhh
Confidence            34445555555544432    13444555555555555554 224444433   355555555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.89  E-value=1.3e-09  Score=82.49  Aligned_cols=66  Identities=26%  Similarity=0.275  Sum_probs=58.8

Q ss_pred             CCccEEEccCCCCC--CchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCC-ccchhh
Q psy8923          21 GLTEHLSIVNNNLE--KLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ-IPDALE   89 (273)
Q Consensus        21 ~~l~~L~l~~N~l~--~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~-ip~~l~   89 (273)
                      ++|+.|++++|.++  .+|..+..+++|+.|++++|.++.  + ..+..+++|+.|+|++|+++. +|..+.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   85 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAE   85 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence            56788999999999  689989999999999999999998  6 778899999999999999996 776544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.89  E-value=2.5e-09  Score=91.74  Aligned_cols=86  Identities=26%  Similarity=0.343  Sum_probs=62.3

Q ss_pred             CCCccccCCCCCceecC-------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCC
Q psy8923           4 FEPGTFCMASKSESVTI-------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLE   69 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l-------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~   69 (273)
                      ..|..+..+++|+.+.+             ++|++|+|++|.|+++ |..|..+++|+.|+|++|+++. ..|..+..++
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~  240 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLANTP  240 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGGGST
T ss_pred             cChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhccCCC
Confidence            45666777777766543             3677888888888876 4778888888888888888886 3333566788


Q ss_pred             CCCEEecccCCCCCccchhhh
Q psy8923          70 DLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        70 ~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +|+.|+|++|+++.+|..+..
T Consensus       241 ~L~~L~L~~N~l~~lp~~l~~  261 (330)
T 1xku_A          241 HLRELHLNNNKLVKVPGGLAD  261 (330)
T ss_dssp             TCCEEECCSSCCSSCCTTTTT
T ss_pred             CCCEEECCCCcCccCChhhcc
Confidence            888888888888887776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.89  E-value=3.3e-09  Score=98.22  Aligned_cols=67  Identities=22%  Similarity=0.362  Sum_probs=38.2

Q ss_pred             CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCC-ccccCCCCCCEEecccCCCC--Cccchhhh
Q psy8923          22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIP-VDLFHLEDLTTLDLSHNNIK--QIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip-~~~~~l~~L~~L~Ls~N~l~--~ip~~l~~   90 (273)
                      +|++|+|++|.|+++ |..|+++++|++|+|++|.++.  +| ..+.++++|++|+|++|+++  .+|..+..
T Consensus        81 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~  151 (606)
T 3vq2_A           81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS--LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN  151 (606)
T ss_dssp             TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC--SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred             hcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc--ccccccCCCCCCCEEeCCCCcccceechHhHhh
Confidence            455566666666654 4556666666666666666654  33 44556666666666666665  34554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.88  E-value=9.8e-10  Score=99.55  Aligned_cols=77  Identities=26%  Similarity=0.336  Sum_probs=51.5

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCCc-hhhhc-CCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKL-FGELT-ELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN   80 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~l-p~~~~-~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~   80 (273)
                      |..|..|+.+++|        ++|+|++|.|+++ |..+. .+++|+.|+|++|.|++  +|. ...+++|+.|+|++|+
T Consensus       134 ~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~Ls~N~  202 (487)
T 3oja_A          134 MLRDLDEGCRSRV--------QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNK  202 (487)
T ss_dssp             SGGGBCGGGGSSE--------EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSC
T ss_pred             CCCchhhcCCCCC--------CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--ccc-cccCCCCCEEECCCCC
Confidence            3344455554444        6688888888874 55554 67788888888888876  543 3357777888888887


Q ss_pred             CCCccchhhh
Q psy8923          81 IKQIPDALEN   90 (273)
Q Consensus        81 l~~ip~~l~~   90 (273)
                      |+.+|..+..
T Consensus       203 l~~~~~~~~~  212 (487)
T 3oja_A          203 LAFMGPEFQS  212 (487)
T ss_dssp             CCEECGGGGG
T ss_pred             CCCCCHhHcC
Confidence            7777665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.88  E-value=3e-09  Score=94.99  Aligned_cols=81  Identities=22%  Similarity=0.281  Sum_probs=57.7

Q ss_pred             cccCCCCCceecC--------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCC
Q psy8923           8 TFCMASKSESVTI--------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLT   72 (273)
Q Consensus         8 ~~~~~~~l~~~~l--------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~   72 (273)
                      .|..+++|+.+.+              ++|+.|+|++|.|+++ |..|.++++|+.|+|++|+|+. ..|..+.++++|+
T Consensus       180 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  258 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLV  258 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCC
T ss_pred             hhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-EChhhhcCCCCCC
Confidence            4556666655533              3677788888888876 4777888888888888888876 3344566788888


Q ss_pred             EEecccCCCCCccchhh
Q psy8923          73 TLDLSHNNIKQIPDALE   89 (273)
Q Consensus        73 ~L~Ls~N~l~~ip~~l~   89 (273)
                      .|+|++|+|+.+|...+
T Consensus       259 ~L~L~~N~l~~~~~~~~  275 (440)
T 3zyj_A          259 EINLAHNNLTLLPHDLF  275 (440)
T ss_dssp             EEECTTSCCCCCCTTTT
T ss_pred             EEECCCCCCCccChhHh
Confidence            88888888887776544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.88  E-value=1.2e-09  Score=99.05  Aligned_cols=77  Identities=22%  Similarity=0.267  Sum_probs=49.8

Q ss_pred             CCCCCcccc-CCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923           2 VGFEPGTFC-MASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN   80 (273)
Q Consensus         2 ~g~~p~~~~-~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~   80 (273)
                      +|.+|..++ .+++|        ++|+|++|.|+++|+. ..+++|+.|+|++|+|++  +|+.+..+++|+.|+|++|+
T Consensus       157 ~~~~~~~l~~~l~~L--------~~L~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          157 DTVNFAELAASSDTL--------EHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             CEEEGGGGGGGTTTC--------CEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC
T ss_pred             CCcChHHHhhhCCcc--------cEEecCCCcccccccc-ccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCc
Confidence            344555554 45555        5577777777766532 246777777777777776  66666677777777777777


Q ss_pred             CCCccchhh
Q psy8923          81 IKQIPDALE   89 (273)
Q Consensus        81 l~~ip~~l~   89 (273)
                      |+.+|..+.
T Consensus       226 l~~lp~~l~  234 (487)
T 3oja_A          226 LVLIEKALR  234 (487)
T ss_dssp             CCEECTTCC
T ss_pred             Ccccchhhc
Confidence            776666543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.88  E-value=3.1e-09  Score=94.95  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=73.9

Q ss_pred             CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923           2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVD   64 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~   64 (273)
                      .+..|..|+.+++|+.+.+                ++|++|+|++|+|+++ |..|..+++|++|+|++|+|++  +|..
T Consensus       312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~  389 (455)
T 3v47_A          312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS--VPDG  389 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--CCTT
T ss_pred             cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc--CCHh
Confidence            3445777777777777643                3889999999999997 6889999999999999999998  7775


Q ss_pred             c-cCCCCCCEEecccCCCC-Cccc--hhhhhhh
Q psy8923          65 L-FHLEDLTTLDLSHNNIK-QIPD--ALENAKR   93 (273)
Q Consensus        65 ~-~~l~~L~~L~Ls~N~l~-~ip~--~l~~w~g   93 (273)
                      + ..+++|+.|+|++|+++ .+|.  .+..|..
T Consensus       390 ~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~  422 (455)
T 3v47_A          390 IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN  422 (455)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred             HhccCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence            5 58999999999999999 7773  3445653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.88  E-value=1.1e-09  Score=85.38  Aligned_cols=65  Identities=22%  Similarity=0.141  Sum_probs=59.1

Q ss_pred             CCccEEEccCCCCCCchh-hhcCCccCCEeeccCCcCccCCCCc--cccCCCCCCEEecccCCCCCccch
Q psy8923          21 GLTEHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPV--DLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~ip~--~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      ++|++|+|++|.|+++|+ .|..+++|++|+|++|+|+.  +|.  .+..+++|+.|++++|+++.+|..
T Consensus        64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~  131 (176)
T 1a9n_A           64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTNKKHY  131 (176)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred             CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence            478999999999999984 45999999999999999988  887  788999999999999999988874

>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1

Probab=98.87  E-value=1.6e-09  Score=76.95  Aligned_cols=39  Identities=23%  Similarity=0.390  Sum_probs=35.5

Q ss_pred             CCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         235 KAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       235 ~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                      ..++.||||||++.+||+|+|++|+..||..|.++|+++
T Consensus        25 sLns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i   63 (104)
T 1kcq_A           25 SFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI   63 (104)
T ss_dssp             GCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HcCCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            346789999999999999999999999999999999763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.87  E-value=6.7e-09  Score=86.67  Aligned_cols=85  Identities=26%  Similarity=0.465  Sum_probs=69.6

Q ss_pred             CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc
Q psy8923           2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD   64 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~   64 (273)
                      .+..|..|+.+++|+.+.+                ++|++|+|++|.|+++| ..|+.+++|+.|++++|++++  +|..
T Consensus        98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~  175 (272)
T 3rfs_A           98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS--LPEG  175 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTT
T ss_pred             CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc--cCHH
Confidence            3455556777777776633                37899999999999987 567999999999999999998  6655


Q ss_pred             -ccCCCCCCEEecccCCCCCccchh
Q psy8923          65 -LFHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        65 -~~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                       +..+++|+.|+|++|+++.+|...
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~  200 (272)
T 3rfs_A          176 VFDKLTQLKDLRLYQNQLKSVPDGV  200 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             HhcCCccCCEEECCCCcCCccCHHH
Confidence             568999999999999999877643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.87  E-value=2.7e-09  Score=91.45  Aligned_cols=66  Identities=26%  Similarity=0.295  Sum_probs=60.8

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      +|+.|+|++|.|++++ ..+..+++|+.|+|++|+++.  +|..+..+++|+.|+|++|+++.+|...+
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCCcCCccChhhc
Confidence            5578999999999986 689999999999999999998  99999999999999999999999987654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.87  E-value=5.2e-09  Score=88.68  Aligned_cols=64  Identities=28%  Similarity=0.376  Sum_probs=42.6

Q ss_pred             CccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|.+++  +|..+..+++|+.|+|++|+++. ..|..+..+++|+.|+|++|+++.++.
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~  216 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDT  216 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccCh
Confidence            55667777777765  46666777777777777777765 335555666777777777777766554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.87  E-value=9.4e-10  Score=105.95  Aligned_cols=79  Identities=18%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             CCccccCCCCCceecCCCccEEEccCCCCCC------------------chhhhc--CCccCCEeeccCCcCccCCCCcc
Q psy8923           5 EPGTFCMASKSESVTIGLTEHLSIVNNNLEK------------------LFGELT--ELQCLRTLNLRYNKIKNSGIPVD   64 (273)
Q Consensus         5 ~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~------------------lp~~~~--~l~~L~~L~l~~N~l~~~~ip~~   64 (273)
                      +|..|+++++|        ++|+|++|+|++                  ||..++  +|++|+.|+|++|++.+ .+|..
T Consensus       440 IP~~l~~L~~L--------~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~  510 (876)
T 4ecn_A          440 ISKAIQRLTKL--------QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-QLPDF  510 (876)
T ss_dssp             ECGGGGGCTTC--------CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-SCCGG
T ss_pred             hhHHHhcCCCC--------CEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-cChHH
Confidence            78888888777        559999999998                  888877  89999999999998885 78888


Q ss_pred             ccCCCCCCEEecccCC-CCC--ccchhhhhh
Q psy8923          65 LFHLEDLTTLDLSHNN-IKQ--IPDALENAK   92 (273)
Q Consensus        65 ~~~l~~L~~L~Ls~N~-l~~--ip~~l~~w~   92 (273)
                      +.++++|+.|+|++|+ ++.  +|..+..+.
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~  541 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLA  541 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHH
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhh
Confidence            8899999999999998 874  888776653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.86  E-value=7.3e-09  Score=97.30  Aligned_cols=85  Identities=29%  Similarity=0.413  Sum_probs=62.6

Q ss_pred             CCCCccccCCCCCceec----------------CCCccEEEccCCCCCCch---------hhhcCCccCCEeeccCCcCc
Q psy8923           3 GFEPGTFCMASKSESVT----------------IGLTEHLSIVNNNLEKLF---------GELTELQCLRTLNLRYNKIK   57 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~----------------l~~l~~L~l~~N~l~~lp---------~~~~~l~~L~~L~l~~N~l~   57 (273)
                      |.+|..|+.+++|+.+.                +++|++|+|++|+|++++         ..|..+++|+.|+|++|+++
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence            55677777777766652                246788888888888753         12677888888888888888


Q ss_pred             cCCCCcc-ccCCCCCCEEecccCCCCCccchhh
Q psy8923          58 NSGIPVD-LFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        58 ~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      .  +|.. +.++++|+.|+|++|+|+.+|...+
T Consensus       550 ~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  580 (680)
T 1ziw_A          550 E--IPVEVFKDLFELKIIDLGLNNLNTLPASVF  580 (680)
T ss_dssp             C--CCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             C--CCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence            7  7764 5578888888888888888877654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.86  E-value=1.3e-09  Score=93.01  Aligned_cols=65  Identities=28%  Similarity=0.392  Sum_probs=36.2

Q ss_pred             CccEEEccCCCCCCch-hhh-cCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GEL-TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~-~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      +|++|+|++|.|+.++ ..+ ..+++|++|+|++|+++.  +|.. ..+++|+.|+|++|+++.+|..+.
T Consensus       145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~  211 (317)
T 3o53_A          145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQ-VVFAKLKTLDLSSNKLAFMGPEFQ  211 (317)
T ss_dssp             SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EECC-CCCTTCCEEECCSSCCCEECGGGG
T ss_pred             CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc--cccc-cccccCCEEECCCCcCCcchhhhc
Confidence            4455666666666643 333 355666666666666665  4332 235566666666666665555433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.85  E-value=4.5e-09  Score=94.13  Aligned_cols=68  Identities=24%  Similarity=0.300  Sum_probs=53.5

Q ss_pred             CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      ++|+.|+|++|.|+++ |..|.++++|+.|+|++|+++. ..|..+.++++|+.|+|++|+|+.+|...+
T Consensus       218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  286 (452)
T 3zyi_A          218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLF  286 (452)
T ss_dssp             TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred             ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence            3678888888888886 5778888888888888888886 445566688888888888888888876544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.85  E-value=1.9e-09  Score=92.07  Aligned_cols=67  Identities=25%  Similarity=0.316  Sum_probs=50.6

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      ++|++|+|++|.|+.+|... .+++|+.|+|++|+|++  +|..+..+++|+.|+|++|+++.+|..+..
T Consensus       169 ~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  235 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRF  235 (317)
T ss_dssp             TTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             CcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCcccchhhHhhc
Confidence            46778888888888775332 47888888888888887  777777888888888888888877765543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.85  E-value=3.7e-09  Score=90.77  Aligned_cols=67  Identities=24%  Similarity=0.307  Sum_probs=39.2

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      +|+.|+|++|.|++++ ..|..+++|+.|+|++|+++. ..|..+..+++|+.|+|++|+++.+|..+.
T Consensus       194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~  261 (332)
T 2ft3_A          194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLP  261 (332)
T ss_dssp             SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCCBCCTTGG
T ss_pred             CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCeecChhhh
Confidence            4455666666666654 556666666666666666665 222345566666666666666666665443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.85  E-value=3e-09  Score=84.44  Aligned_cols=67  Identities=22%  Similarity=0.240  Sum_probs=51.1

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhh
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALE   89 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~   89 (273)
                      ++|++|++++|.++.++ .+..+++|++|++++|+++. ..|..+..+++|+.|+|++|+++ ..|..+.
T Consensus        66 ~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~  133 (197)
T 4ezg_A           66 HNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTS-DKIPNLSGLTSLTLLDISHSAHDDSILTKIN  133 (197)
T ss_dssp             TTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBG-GGSCCCTTCTTCCEEECCSSBCBGGGHHHHT
T ss_pred             CCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCc-ccChhhcCCCCCCEEEecCCccCcHhHHHHh
Confidence            35677888888777665 67778888888888888885 56777788888888888888888 4555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.84  E-value=6.1e-09  Score=88.71  Aligned_cols=72  Identities=26%  Similarity=0.337  Sum_probs=34.9

Q ss_pred             CCCCccccCCCCCceecCCCccEEEccCCCCCC---chhhh--cCCccCCEeeccCCcCcc-CCCCccc-cCCCCCCEEe
Q psy8923           3 GFEPGTFCMASKSESVTIGLTEHLSIVNNNLEK---LFGEL--TELQCLRTLNLRYNKIKN-SGIPVDL-FHLEDLTTLD   75 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~---lp~~~--~~l~~L~~L~l~~N~l~~-~~ip~~~-~~l~~L~~L~   75 (273)
                      +..|..|+.+++|        ++|+|++|++++   +|..+  +.+++|+.|+|++|+|+. +.++..+ .++++|+.|+
T Consensus       163 ~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~  234 (312)
T 1wwl_A          163 NFSCEQVRVFPAL--------STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD  234 (312)
T ss_dssp             CCCTTTCCCCSSC--------CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred             cchHHHhccCCCC--------CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence            3444566666555        445555555544   23333  455555555555555552 0022222 2445555555


Q ss_pred             cccCCCC
Q psy8923          76 LSHNNIK   82 (273)
Q Consensus        76 Ls~N~l~   82 (273)
                      |++|+++
T Consensus       235 Ls~N~l~  241 (312)
T 1wwl_A          235 LSHNSLR  241 (312)
T ss_dssp             CTTSCCC
T ss_pred             CCCCcCC
Confidence            5555555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.84  E-value=6.5e-09  Score=86.79  Aligned_cols=85  Identities=20%  Similarity=0.336  Sum_probs=69.7

Q ss_pred             CCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-ccc
Q psy8923           5 EPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLF   66 (273)
Q Consensus         5 ~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~   66 (273)
                      .|..|..+++|+.+.+                ++|++|+|++|.|++++ ..|.++++|++|++++|+++.  ++. .+.
T Consensus        44 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~  121 (276)
T 2z62_A           44 GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIG  121 (276)
T ss_dssp             CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC--STTCCCT
T ss_pred             CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccc--cCchhcc
Confidence            3456777777776643                37899999999999986 789999999999999999997  655 677


Q ss_pred             CCCCCCEEecccCCCCC--ccchhhhh
Q psy8923          67 HLEDLTTLDLSHNNIKQ--IPDALENA   91 (273)
Q Consensus        67 ~l~~L~~L~Ls~N~l~~--ip~~l~~w   91 (273)
                      .+++|+.|+|++|+++.  +|..+..+
T Consensus       122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l  148 (276)
T 2z62_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNL  148 (276)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred             cCCCCCEEECcCCccceecCchhhccC
Confidence            99999999999999986  67766653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.84  E-value=4.1e-09  Score=94.40  Aligned_cols=62  Identities=32%  Similarity=0.403  Sum_probs=37.2

Q ss_pred             ccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccc
Q psy8923          23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        23 l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      |++|+|++|.|++++ ..|.++++|++|+|++|+|+.  +|.. +.++++|+.|+|++|+++.+|.
T Consensus       101 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~  164 (452)
T 3zyi_A          101 LEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPS  164 (452)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB--CCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred             CCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc--cChhhhcccCCCCEEECCCCCcceeCH
Confidence            355666666666654 556666666666666666665  4443 3456666666666666665554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.82  E-value=1.4e-08  Score=92.25  Aligned_cols=77  Identities=18%  Similarity=0.163  Sum_probs=51.2

Q ss_pred             CCCCCccccCCCCCceecCCCccEEEccCCCCCCc---hhhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecc
Q psy8923           2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKL---FGELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLS   77 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~l---p~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls   77 (273)
                      .+.+|..++.+++|        ++|+|++|+|+++   |..++.+++|++|++++|++++ .+|.. +..+++|+.|+|+
T Consensus       337 ~~~~~~~~~~l~~L--------~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~-~l~~~~~~~l~~L~~L~Ls  407 (520)
T 2z7x_B          337 TDTVFENCGHLTEL--------ETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY-DEKKGDCSWTKSLLSLNMS  407 (520)
T ss_dssp             CTTTTTTCCCCSSC--------CEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC-CGGGCSCCCCTTCCEEECC
T ss_pred             ChhhhhhhccCCCC--------CEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc-ccccchhccCccCCEEECc
Confidence            34456666666555        5677777877754   3567777778888887777774 56665 4466777777777


Q ss_pred             cCCCC-Cccch
Q psy8923          78 HNNIK-QIPDA   87 (273)
Q Consensus        78 ~N~l~-~ip~~   87 (273)
                      +|+++ .+|..
T Consensus       408 ~N~l~~~~~~~  418 (520)
T 2z7x_B          408 SNILTDTIFRC  418 (520)
T ss_dssp             SSCCCGGGGGS
T ss_pred             CCCCCcchhhh
Confidence            77775 44443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.82  E-value=7.5e-09  Score=96.00  Aligned_cols=62  Identities=26%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +|++|+|++|.|+++| ..|+++++|++|+|++|.|+.  +|..+ .++++|+.|+|++|+++.++
T Consensus       100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~Ls~N~l~~~~  163 (597)
T 3oja_B          100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIE  163 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCCEEEeeCCcCCCCC
Confidence            3355555555555554 344555555555555555555  55443 35555555555555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.81  E-value=5e-09  Score=83.15  Aligned_cols=64  Identities=23%  Similarity=0.335  Sum_probs=52.7

Q ss_pred             CCccEEEccCCCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC-CCCcc
Q psy8923          21 GLTEHLSIVNNNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN-IKQIP   85 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~-l~~ip   85 (273)
                      ++|++|++++|.|+. .|..++.+++|++|+|++|+++. ..|..+..+++|+.|+|++|+ ++.+|
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD-SILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG-GGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc-HhHHHHhhCCCCCEEEccCCCCccccH
Confidence            345779999999887 56788888999999999999885 567778888899999999987 77776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.81  E-value=1.6e-10  Score=91.96  Aligned_cols=67  Identities=31%  Similarity=0.366  Sum_probs=51.5

Q ss_pred             cccCCCCCceecCCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923           8 TFCMASKSESVTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus         8 ~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      .|+.+++|        ++|+|++|.|+.+| .+..+++|++|++++|+++.  +|..+..+++|+.|+|++|+++.+|
T Consensus        43 ~~~~l~~L--------~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~  109 (198)
T 1ds9_A           43 TLSTLKAC--------KHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS  109 (198)
T ss_dssp             HHHHTTTC--------SEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHH
T ss_pred             HHhcCCCC--------CEEECCCCCCcccc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCC
Confidence            56655555        56888888888877 77778888888888888887  7776667778888888888888776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.80  E-value=9.1e-09  Score=94.44  Aligned_cols=66  Identities=23%  Similarity=0.395  Sum_probs=36.2

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCCC--ccchhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIKQ--IPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~~--ip~~l~   89 (273)
                      +|++|+|++|.|+.+| ..|+++++|++|++++|+++.  +|. .+.++++|++|+|++|+++.  +|..+.
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~  146 (570)
T 2z63_A           77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPEYFS  146 (570)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC--STTCSCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             hCCEEeCcCCcCCccCHhhhcCcccccccccccccccc--CCCccccccccccEEecCCCccceecChhhhc
Confidence            4455555555555543 455555555555555555554  443 34555666666666666553  455444

>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A

Probab=98.80  E-value=2.6e-09  Score=77.14  Aligned_cols=40  Identities=35%  Similarity=0.508  Sum_probs=36.2

Q ss_pred             CCCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         234 PKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       234 ~~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                      ...++.||||||++..||+|+|++|+..||..|.++|+.+
T Consensus        34 ssLns~D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i   73 (114)
T 1svq_A           34 SSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI   73 (114)
T ss_dssp             SSCCTTSEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCCeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            4456789999999999999999999999999999999753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.79  E-value=5.2e-09  Score=95.18  Aligned_cols=55  Identities=31%  Similarity=0.335  Sum_probs=29.7

Q ss_pred             cEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          24 EHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        24 ~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      ++|+|++|+|+++ |..|+++++|++|+|++|+|+.  +|..  .+++|++|+|++|+++
T Consensus        48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L~~L~L~~N~l~  103 (520)
T 2z7x_B           48 RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFD  103 (520)
T ss_dssp             CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCCSEEECCSSCCS
T ss_pred             cEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCccEEeccCCccc
Confidence            4455555555554 3455555555555555555554  5544  4555555555555555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.78  E-value=8e-09  Score=92.98  Aligned_cols=60  Identities=25%  Similarity=0.303  Sum_probs=25.5

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      +|++|+|++|.|+.+| ..|.++++|++|+|++|+++. ..|..+..+++|+.|+|++|+++
T Consensus        81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~  141 (477)
T 2id5_A           81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLV  141 (477)
T ss_dssp             TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCC
T ss_pred             cCCEEECCCCcCCccCcccccCCCCCCEEECCCCcccc-CChhHccccccCCEEECCCCccc
Confidence            3444444444444444 234444444444444444443 22233334444444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.77  E-value=1e-08  Score=94.25  Aligned_cols=64  Identities=31%  Similarity=0.376  Sum_probs=35.2

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|.|+++| ..|.++++|++|+|++|+|++ ..|..+.++++|++|+|++|+|+.+|.
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~  117 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQNISC  117 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCCEECS
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCCccCc
Confidence            4455555555555554 455555555555555555554 223444455555555555555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.77  E-value=1.6e-08  Score=92.99  Aligned_cols=85  Identities=19%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCCCCccccCCCCCceecC------------------CCccEEEccCCCCCC-ch-hhhcCCccCCEeeccCCcCccCCC
Q psy8923           2 VGFEPGTFCMASKSESVTI------------------GLTEHLSIVNNNLEK-LF-GELTELQCLRTLNLRYNKIKNSGI   61 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l------------------~~l~~L~l~~N~l~~-lp-~~~~~l~~L~~L~l~~N~l~~~~i   61 (273)
                      .+.+|..++.+++|+.+.+                  ++|++|+|++|.|++ +| ..+..+++|+.|+|++|++++ .+
T Consensus       366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~  444 (562)
T 3a79_B          366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SV  444 (562)
T ss_dssp             CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-GG
T ss_pred             ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-ch
Confidence            4456777777766655322                  245556666666655 55 234444444444444444432 23


Q ss_pred             CccccCCCCCCEEecccCCCCCccchhh
Q psy8923          62 PVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        62 p~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      |..+.  ++|+.|+|++|+++.||..++
T Consensus       445 ~~~l~--~~L~~L~L~~N~l~~ip~~~~  470 (562)
T 3a79_B          445 FRCLP--PKVKVLDLHNNRIMSIPKDVT  470 (562)
T ss_dssp             GSSCC--TTCSEEECCSSCCCCCCTTTT
T ss_pred             hhhhc--CcCCEEECCCCcCcccChhhc
Confidence            32221  466666666666666666555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.77  E-value=1.1e-08  Score=91.39  Aligned_cols=63  Identities=32%  Similarity=0.443  Sum_probs=41.2

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCc-cccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPV-DLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~-~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|.|+.++ ..|.++++|++|+|++|+|+.  +|. .+..+++|+.|+|++|+++.+|.
T Consensus        89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~i~~~~~  153 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPS  153 (440)
T ss_dssp             SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS--CCTTTSCSCSSCCEEECCSCCCCEECT
T ss_pred             CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe--eCHhHhhccccCceeeCCCCcccccCH
Confidence            4456777777776654 566667777777777777765  554 34566777777777777666655

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.77  E-value=1.5e-08  Score=88.79  Aligned_cols=63  Identities=27%  Similarity=0.380  Sum_probs=41.3

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|.|+++| ..|+++++|++|+|++|+++.  +|..+ .++++|++|+|++|+++.++.
T Consensus        94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~  158 (390)
T 3o6n_A           94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIED  158 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcEEECCCCccCccCh
Confidence            4566777777777664 456667777777777777766  66554 466777777777777665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.76  E-value=8.6e-09  Score=87.77  Aligned_cols=72  Identities=24%  Similarity=0.177  Sum_probs=44.4

Q ss_pred             CCCCCccc--cCCCCCceecCCCccEEEccCCCCCCchhhhcCC-----ccCCEeeccCCcCccCCCCccccCCCCCCEE
Q psy8923           2 VGFEPGTF--CMASKSESVTIGLTEHLSIVNNNLEKLFGELTEL-----QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL   74 (273)
Q Consensus         2 ~g~~p~~~--~~~~~l~~~~l~~l~~L~l~~N~l~~lp~~~~~l-----~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L   74 (273)
                      .|.+|..+  +.+++|        ++|+|++|.|+++|..++.+     ++|++|+|++|++++ ..|..+..+++|+.|
T Consensus       108 ~~~~~~~~~~~~l~~L--------~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L  178 (312)
T 1wwl_A          108 TGTAPPPLLEATGPDL--------NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTL  178 (312)
T ss_dssp             BSCCCCCSSSCCSCCC--------SEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCC-CCTTTCCCCSSCCEE
T ss_pred             cchhHHHHHHhcCCCc--------cEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCcc-chHHHhccCCCCCEE
Confidence            34555554  444444        55777777776666555555     667777777777765 333555666777777


Q ss_pred             ecccCCCC
Q psy8923          75 DLSHNNIK   82 (273)
Q Consensus        75 ~Ls~N~l~   82 (273)
                      +|++|+++
T Consensus       179 ~Ls~N~l~  186 (312)
T 1wwl_A          179 DLSDNPEL  186 (312)
T ss_dssp             ECCSCTTC
T ss_pred             ECCCCCcC
Confidence            77777655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.76  E-value=1.4e-08  Score=95.31  Aligned_cols=82  Identities=26%  Similarity=0.334  Sum_probs=57.1

Q ss_pred             CCCCCccccCCCCCceecC----------------CCccEEEccCCCCCCchh-hhcCCccCCEeeccCCcCccCCCC-c
Q psy8923           2 VGFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIP-V   63 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~ip-~   63 (273)
                      .+..|..|+.+++|+.+.+                ++|++|+|++|.|+.+|+ .|+++++|++|+|++|++++  +| .
T Consensus        38 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~~~  115 (680)
T 1ziw_A           38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK--IKNN  115 (680)
T ss_dssp             CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCSC
T ss_pred             CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCc--cChh
Confidence            3444556777777766543                266778888888877773 57778888888888887776  54 4


Q ss_pred             cccCCCCCCEEecccCCCCCcc
Q psy8923          64 DLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        64 ~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      .+.++++|++|+|++|+++.++
T Consensus       116 ~~~~l~~L~~L~Ls~n~l~~~~  137 (680)
T 1ziw_A          116 PFVKQKNLITLDLSHNGLSSTK  137 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCC
T ss_pred             HccccCCCCEEECCCCcccccC
Confidence            5667778888888887777443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.76  E-value=5.5e-09  Score=85.40  Aligned_cols=63  Identities=13%  Similarity=0.367  Sum_probs=40.8

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCc-CccCCCCc-cccCCCCCCEEeccc-CCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNK-IKNSGIPV-DLFHLEDLTTLDLSH-NNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~-l~~~~ip~-~~~~l~~L~~L~Ls~-N~l~~ip~   86 (273)
                      +|++|+|++|+|+++| ..|.++++|+.|++++|+ ++.  +|. .+.++++|++|+|++ |+++.+|.
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~--i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ--LESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE--ECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce--eCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            4566777777777665 356667777777777775 665  554 444666777777766 66666654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.75  E-value=9e-09  Score=89.08  Aligned_cols=64  Identities=25%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|.|+.+| ..|.++++|+.|+|++|++++ ..|..+.++++|++|+|++|+++.+|.
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~  117 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSS  117 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCH
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCH
Confidence            3444555555555544 245555555555555555554 222334445555555555555554444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.75  E-value=2.4e-08  Score=92.50  Aligned_cols=68  Identities=25%  Similarity=0.344  Sum_probs=47.1

Q ss_pred             CccEEEccCCCCCC--ch--hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhhh
Q psy8923          22 LTEHLSIVNNNLEK--LF--GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~--lp--~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~~   90 (273)
                      +|++|+|++|.+++  +|  ..+..+++|+.|++++|++++ ..|..+.++++|+.|+|++|+++ ..|..+..
T Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred             CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence            66778888887775  23  457777788888888887776 44566667778888888888777 34444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.74  E-value=1.5e-08  Score=92.67  Aligned_cols=59  Identities=29%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCC
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN   80 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~   80 (273)
                      +|++|+|++|.|+++| ..|+++++|++|+|++|.++.-.+|..+.++++|+.|++++|+
T Consensus        75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            4455555555555543 2355555555555555555420123444455555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.74  E-value=2.6e-08  Score=84.03  Aligned_cols=61  Identities=33%  Similarity=0.443  Sum_probs=46.2

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      ++|++|+|++|.|+.+|. +..+++|++|+|++|+++.  + +.+..+++|+.|+|++|+++.++
T Consensus        90 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~~  150 (291)
T 1h6t_A           90 KNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDIT  150 (291)
T ss_dssp             TTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCCG
T ss_pred             CCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcch
Confidence            366778888888887665 7778888888888888876  5 35667788888888888877663

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.74  E-value=2.1e-08  Score=83.35  Aligned_cols=59  Identities=34%  Similarity=0.538  Sum_probs=45.2

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +|++|+|++|+|+++|....  ++|+.|+|++|+++.  +| .+..+++|+.|+|++|+++.+|
T Consensus        86 ~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~~~  144 (263)
T 1xeu_A           86 KLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRD--TD-SLIHLKNLEILSIRNNKLKSIV  144 (263)
T ss_dssp             SCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSB--SG-GGTTCTTCCEEECTTSCCCBCG
T ss_pred             CCCEEECCCCccCCcCcccc--CcccEEEccCCccCC--Ch-hhcCcccccEEECCCCcCCCCh
Confidence            56778888888888775333  788888888888887  65 5777888888888888888775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.72  E-value=1.9e-08  Score=86.22  Aligned_cols=67  Identities=31%  Similarity=0.351  Sum_probs=43.7

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      +|++|+|++|.|+.++ ..|.++++|++|+|++|+++. ..|..+.++++|++|+|++|+++.+|..++
T Consensus        55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~  122 (332)
T 2ft3_A           55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYISKNHLVEIPPNLP  122 (332)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEECCSSCCCSCCSSCC
T ss_pred             CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEECCCCcCCccCcccc
Confidence            4566777777777664 466677777777777777765 335556666777777777777666665443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.72  E-value=2e-08  Score=92.12  Aligned_cols=88  Identities=28%  Similarity=0.364  Sum_probs=71.0

Q ss_pred             CCCCccccCCCCCceecC----------------CCccEEEccCCCCCCchh-hhcCCccCCEeeccCCcCccCCCCccc
Q psy8923           3 GFEPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLFG-ELTELQCLRTLNLRYNKIKNSGIPVDL   65 (273)
Q Consensus         3 g~~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp~-~~~~l~~L~~L~l~~N~l~~~~ip~~~   65 (273)
                      +..|..|+.+++|+.+.+                ++|++|++++|.++.+|. .|+++++|++|++++|.++.-.+|..+
T Consensus        66 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~  145 (570)
T 2z63_A           66 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  145 (570)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh
Confidence            334666777777777643                378999999999999984 799999999999999999852368899


Q ss_pred             cCCCCCCEEecccCCCCCccc-hhhh
Q psy8923          66 FHLEDLTTLDLSHNNIKQIPD-ALEN   90 (273)
Q Consensus        66 ~~l~~L~~L~Ls~N~l~~ip~-~l~~   90 (273)
                      .++++|+.|++++|+++.++. .+..
T Consensus       146 ~~l~~L~~L~l~~n~l~~~~~~~~~~  171 (570)
T 2z63_A          146 SNLTNLEHLDLSSNKIQSIYCTDLRV  171 (570)
T ss_dssp             GGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred             cccCCCCEEeCcCCccceecHHHccc
Confidence            999999999999999996653 3443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.72  E-value=3e-08  Score=84.35  Aligned_cols=62  Identities=27%  Similarity=0.396  Sum_probs=48.2

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|+|++|.|+.+| .+..+++|+.|+|++|+++.  +|. +..+++|+.|+|++|+++.+|.
T Consensus        85 ~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~  146 (308)
T 1h6u_A           85 TKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP  146 (308)
T ss_dssp             CSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc
Confidence            36777888888888875 57778888888888888887  664 6778888888888888887765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.72  E-value=3e-08  Score=83.61  Aligned_cols=74  Identities=28%  Similarity=0.320  Sum_probs=55.3

Q ss_pred             ccCCCCCceecC--------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEE
Q psy8923           9 FCMASKSESVTI--------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL   74 (273)
Q Consensus         9 ~~~~~~l~~~~l--------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L   74 (273)
                      ++.+++|+.+.+              ++|++|+|++|.|+.++ .+..+++|+.|++++|+++.  + ..+..+++|+.|
T Consensus        86 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L  161 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTL  161 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEE
T ss_pred             cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEE
Confidence            666666665533              37788888888888874 57778888888888888887  5 567778888888


Q ss_pred             ecccCCCCCccc
Q psy8923          75 DLSHNNIKQIPD   86 (273)
Q Consensus        75 ~Ls~N~l~~ip~   86 (273)
                      +|++|+++.++.
T Consensus       162 ~L~~N~l~~~~~  173 (291)
T 1h6t_A          162 SLEDNQISDIVP  173 (291)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EccCCccccchh
Confidence            888888887665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.70  E-value=1.9e-08  Score=85.23  Aligned_cols=70  Identities=26%  Similarity=0.319  Sum_probs=56.4

Q ss_pred             CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCc-cchhhh
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI-PDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~i-p~~l~~   90 (273)
                      ++|++|++++|.++++ |..|..+++|+.|++++|.+++..+|..+..+++|+.|+|++|+++.+ |..+..
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  197 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  197 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence            3678899999999875 577888999999999999987424788888999999999999999966 444443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.70  E-value=6.6e-09  Score=91.11  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=61.6

Q ss_pred             CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhh
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENA   91 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w   91 (273)
                      ++|+.|+|++|.|+++ |..|..+++|+.|+|++|+++.  +|..+..+++|+.|+|++|+++.+|..+..+
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l  317 (390)
T 3o6n_A          248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQF  317 (390)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHH
T ss_pred             CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCcceecCcccccc
Confidence            4557899999999996 6889999999999999999998  8888889999999999999999999877654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.69  E-value=6.6e-09  Score=96.35  Aligned_cols=69  Identities=22%  Similarity=0.303  Sum_probs=60.8

Q ss_pred             CCccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhhh
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENA   91 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~w   91 (273)
                      ++|+.|+|++|.|+++ |..|+.+++|+.|+|++|++++  +|..+..+++|+.|+|++|+++.+|..+..+
T Consensus       254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l  323 (597)
T 3oja_B          254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQF  323 (597)
T ss_dssp             TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCCCCGGGHHHH
T ss_pred             CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCCccCcccccC
Confidence            3457799999999996 6889999999999999999998  8888888999999999999999999877654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.68  E-value=3.9e-08  Score=91.24  Aligned_cols=60  Identities=35%  Similarity=0.425  Sum_probs=29.6

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +|+.|+|++|.|+.+| .+..|++|+.|+|++|+|+.  + ..+..|++|+.|+|++|+|+.++
T Consensus       110 ~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A          110 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             TCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             CCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECcCCcCCCch
Confidence            3444555555555442 24445555555555555554  3 34445555555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.68  E-value=2.5e-08  Score=86.23  Aligned_cols=71  Identities=23%  Similarity=0.352  Sum_probs=37.6

Q ss_pred             CccccCCCCCceecCCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCC
Q psy8923           6 PGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus         6 p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~   83 (273)
                      +..|+.+++|+.        |+|++|.|++++ ..|.++++|++|+|++|+++.  +|.. +.++++|++|+|++|+++.
T Consensus        69 ~~~~~~l~~L~~--------L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~  138 (353)
T 2z80_A           69 NSDLQRCVNLQA--------LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYKT  138 (353)
T ss_dssp             TTTTTTCTTCCE--------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCSS
T ss_pred             HHHhccCCCCCE--------EECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCcc
Confidence            335666666644        555555555543 445555555555555555554  4443 3455555555555555555


Q ss_pred             ccc
Q psy8923          84 IPD   86 (273)
Q Consensus        84 ip~   86 (273)
                      +|.
T Consensus       139 l~~  141 (353)
T 2z80_A          139 LGE  141 (353)
T ss_dssp             SCS
T ss_pred             cCc
Confidence            544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.68  E-value=1.1e-08  Score=83.55  Aligned_cols=72  Identities=18%  Similarity=0.250  Sum_probs=58.8

Q ss_pred             CCccccCCCCCceecCCCccEEEccCCC-CCCch-hhhcCCccCCEeeccC-CcCccCCCCc-cccCCCCCCEEecccCC
Q psy8923           5 EPGTFCMASKSESVTIGLTEHLSIVNNN-LEKLF-GELTELQCLRTLNLRY-NKIKNSGIPV-DLFHLEDLTTLDLSHNN   80 (273)
Q Consensus         5 ~p~~~~~~~~l~~~~l~~l~~L~l~~N~-l~~lp-~~~~~l~~L~~L~l~~-N~l~~~~ip~-~~~~l~~L~~L~Ls~N~   80 (273)
                      .|..|+.+++|        ++|++++|. ++.+| ..|.++++|++|++++ |+++.  +|. .+.++++|+.|++++|+
T Consensus        47 ~~~~~~~l~~L--------~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~~f~~l~~L~~L~l~~n~  116 (239)
T 2xwt_C           47 PSHAFSNLPNI--------SRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPLLKFLGIFNTG  116 (239)
T ss_dssp             CTTTTTTCTTC--------CEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTTSEECCTTCCEEEEEEEC
T ss_pred             CHHHccCCCCC--------cEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHHHhCCCCCCCEEeCCCCC
Confidence            34456666666        669999997 88887 5789999999999998 99998  765 55689999999999999


Q ss_pred             CCCccc
Q psy8923          81 IKQIPD   86 (273)
Q Consensus        81 l~~ip~   86 (273)
                      ++.+|.
T Consensus       117 l~~lp~  122 (239)
T 2xwt_C          117 LKMFPD  122 (239)
T ss_dssp             CCSCCC
T ss_pred             Cccccc
Confidence            998886

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.68  E-value=2e-08  Score=92.94  Aligned_cols=61  Identities=25%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCC-CccccCCCCCCEEecccCCCCCc
Q psy8923          22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGI-PVDLFHLEDLTTLDLSHNNIKQI   84 (273)
Q Consensus        22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~i-p~~~~~l~~L~~L~Ls~N~l~~i   84 (273)
                      +|++|+|++|.|+++ |..|+++++|++|++++|+++.  + |..+.++++|++|+|++|+++.+
T Consensus        82 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--l~~~~~~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A           82 RLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS--IDFIPLHNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSC--GGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred             ccCeeeCCCCcccccChhhhcccccccEeeccccCccc--CCcchhccCCcccEEECCCCccccc
Confidence            444455555555543 3445555555555555555554  3 33444555555555555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.68  E-value=2.6e-08  Score=89.57  Aligned_cols=68  Identities=19%  Similarity=0.220  Sum_probs=47.9

Q ss_pred             CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      ++|+.|+|++|.|+.++ ..|..+++|+.|+|++|+++. ..|..+.++++|+.|+|++|+|+.+|...+
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  316 (477)
T 2id5_A          248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVF  316 (477)
T ss_dssp             TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred             cccCeeECCCCcCCccChhhccccccCCEEECCCCccce-ECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence            35666777777777765 557777777777777777776 445566677777888888777777776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.67  E-value=5.2e-08  Score=82.80  Aligned_cols=74  Identities=20%  Similarity=0.312  Sum_probs=59.2

Q ss_pred             ccCCCCCceecC--------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEE
Q psy8923           9 FCMASKSESVTI--------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTL   74 (273)
Q Consensus         9 ~~~~~~l~~~~l--------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L   74 (273)
                      ++.+++|+.+.+              ++|++|+|++|.|+.+|+ +..+++|+.|++++|+++.  +|. +..+++|+.|
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L  156 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYL  156 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEE
T ss_pred             HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEE
Confidence            666666666543              378889999999988875 8888899999999998887  665 7788888889


Q ss_pred             ecccCCCCCccc
Q psy8923          75 DLSHNNIKQIPD   86 (273)
Q Consensus        75 ~Ls~N~l~~ip~   86 (273)
                      +|++|+++.++.
T Consensus       157 ~l~~n~l~~~~~  168 (308)
T 1h6u_A          157 SIGNAQVSDLTP  168 (308)
T ss_dssp             ECCSSCCCCCGG
T ss_pred             EccCCcCCCChh
Confidence            998888887776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.67  E-value=2.3e-08  Score=96.41  Aligned_cols=61  Identities=26%  Similarity=0.306  Sum_probs=34.6

Q ss_pred             CccEEEccCCCCCCc-hhhhcCCccCCEeeccCCcCccCCCCcc--ccCCCCCCEEecccCCCCC
Q psy8923          22 LTEHLSIVNNNLEKL-FGELTELQCLRTLNLRYNKIKNSGIPVD--LFHLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        22 ~l~~L~l~~N~l~~l-p~~~~~l~~L~~L~l~~N~l~~~~ip~~--~~~l~~L~~L~Ls~N~l~~   83 (273)
                      +|++|+|++|.|+++ |..|+++++|++|+|++|.+++ .+|..  +.++++|++|+|++|+++.
T Consensus        74 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~L~~L~~L~Ls~N~l~~  137 (844)
T 3j0a_A           74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD-AVLKDGYFRNLKALTRLDLSKNQIRS  137 (844)
T ss_dssp             TCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS-CCSTTCCCSSCSSCCEEEEESCCCCC
T ss_pred             CCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc-ccccCccccccCCCCEEECCCCcccc
Confidence            455566666666654 4556666666666666666653 34433  4455566666666665553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.66  E-value=5.7e-08  Score=88.77  Aligned_cols=77  Identities=27%  Similarity=0.360  Sum_probs=43.8

Q ss_pred             CCCccccCCCCCceecC-------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCC
Q psy8923           4 FEPGTFCMASKSESVTI-------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED   70 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l-------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~   70 (273)
                      .+|..++.+++|+.+.+             ++|++|+|++|+|++++   ..+++|+.|+|++|+|+.  ||. ...+++
T Consensus       401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~--ip~-~~~l~~  474 (549)
T 2z81_A          401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKT--LPD-ASLFPV  474 (549)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSS--CCC-GGGCTT
T ss_pred             cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCc--CCC-cccCcc
Confidence            35555555555544322             24455555555555443   356666666666666665  665 345666


Q ss_pred             CCEEecccCCCCCccc
Q psy8923          71 LTTLDLSHNNIKQIPD   86 (273)
Q Consensus        71 L~~L~Ls~N~l~~ip~   86 (273)
                      |+.|+|++|+|+.+|.
T Consensus       475 L~~L~Ls~N~l~~~~~  490 (549)
T 2z81_A          475 LLVMKISRNQLKSVPD  490 (549)
T ss_dssp             CCEEECCSSCCCCCCT
T ss_pred             CCEEecCCCccCCcCH
Confidence            6666666666665544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=3e-08  Score=82.46  Aligned_cols=62  Identities=23%  Similarity=0.344  Sum_probs=38.6

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|++++|.|+.+| .+..+++|+.|+|++|+|++  +|. +.++++|+.|+|++|+++.+|.
T Consensus        41 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~~  102 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEELSVNRNRLKNLNG  102 (263)
T ss_dssp             TTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCSCCTT
T ss_pred             CcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCEEECCCCccCCcCc
Confidence            34555666666666665 45666666666666666665  554 5566666666666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.65  E-value=4e-08  Score=90.44  Aligned_cols=58  Identities=33%  Similarity=0.427  Sum_probs=47.9

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|+|++|.|++||.   .+++|+.|+|++|+|++  +|. +.  ++|+.|+|++|+|+.+|.
T Consensus       140 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          140 ALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred             ccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCCchhh
Confidence            467888888888888876   57888888888888887  887 54  888888888888888887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.65  E-value=3e-08  Score=84.27  Aligned_cols=62  Identities=26%  Similarity=0.406  Sum_probs=54.6

Q ss_pred             CCccEEEccCCCCCCc-hhhhcCC---ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTEL---QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~l---~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|+|++|+|+++ |+.++.+   ++|++|+|++|+|+.  +|..+.  ++|+.|+|++|+|+.+|.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCCSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCCCCch
Confidence            4557799999999996 8777777   699999999999998  998875  899999999999998765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.63  E-value=7.2e-08  Score=89.50  Aligned_cols=75  Identities=31%  Similarity=0.356  Sum_probs=63.6

Q ss_pred             cccCCCCCceecC--------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCE
Q psy8923           8 TFCMASKSESVTI--------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTT   73 (273)
Q Consensus         8 ~~~~~~~l~~~~l--------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~   73 (273)
                      .++.+++|+.+.+              ++|+.|+|++|.|+.+ +.+..|++|+.|+|++|+|++  +++ +..|++|+.
T Consensus       104 ~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~  179 (605)
T 1m9s_A          104 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQN  179 (605)
T ss_dssp             TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC--CGG-GTTCTTCCE
T ss_pred             hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC--chh-hccCCCCCE
Confidence            5667777766643              4889999999999998 678899999999999999997  655 889999999


Q ss_pred             EecccCCCCCccc
Q psy8923          74 LDLSHNNIKQIPD   86 (273)
Q Consensus        74 L~Ls~N~l~~ip~   86 (273)
                      |+|++|+|+.+|.
T Consensus       180 L~Ls~N~i~~l~~  192 (605)
T 1m9s_A          180 LYLSKNHISDLRA  192 (605)
T ss_dssp             EECCSSCCCBCGG
T ss_pred             EECcCCCCCCChH
Confidence            9999999998864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.61  E-value=2.6e-08  Score=86.20  Aligned_cols=66  Identities=21%  Similarity=0.271  Sum_probs=52.8

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccC-CcCccCCCCccc-cCCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRY-NKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~-N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      .++.|+|++|.|+.||+.....++|+.|++++ |.++.  ||..+ .++++|+.||||+|+|+.+|...+
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~--i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~  222 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTRIHSLPSYGL  222 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCC--CCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred             hhhhhccccccccCCChhhccccchhHHhhccCCcccC--CCHHHhccCcccchhhcCCCCcCccChhhh
Confidence            46778889999988887666778888888874 67776  88754 588999999999999999987543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.60  E-value=5.3e-08  Score=87.41  Aligned_cols=58  Identities=28%  Similarity=0.254  Sum_probs=35.8

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +|++|+|++|.|+++|  ++.+++|++|++++|++++  +|  +..+++|+.|++++|+++.+|
T Consensus        86 ~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~l~  143 (457)
T 3bz5_A           86 NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTEID  143 (457)
T ss_dssp             TCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSCCC
T ss_pred             CCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCCccceec
Confidence            5566666666666654  5566666666666666665  54  556666666666666666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.58  E-value=1.2e-07  Score=85.11  Aligned_cols=58  Identities=26%  Similarity=0.291  Sum_probs=47.4

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +|++|+|++|.|+++|  ++.+++|++|++++|++++  +|  +.++++|++|+|++|+++.+|
T Consensus        65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l~  122 (457)
T 3bz5_A           65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKLD  122 (457)
T ss_dssp             TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCeec
Confidence            5677888888888886  7788888888888888887  65  778888888888888888775

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.58  E-value=9.7e-08  Score=92.04  Aligned_cols=85  Identities=21%  Similarity=0.261  Sum_probs=69.3

Q ss_pred             CccccCCCCCceecCC----------------CccEEEccCCCCCC-chhh--hcCCccCCEeeccCCcCccCCCC-ccc
Q psy8923           6 PGTFCMASKSESVTIG----------------LTEHLSIVNNNLEK-LFGE--LTELQCLRTLNLRYNKIKNSGIP-VDL   65 (273)
Q Consensus         6 p~~~~~~~~l~~~~l~----------------~l~~L~l~~N~l~~-lp~~--~~~l~~L~~L~l~~N~l~~~~ip-~~~   65 (273)
                      |..|+++++|+.+.+.                +|++|+|++|.+++ +|..  |++|++|++|+|++|.+++ ..| ..+
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~-~~~~~~~  144 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS-LYLHPSF  144 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC-CCCCGGG
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc-cccchhH
Confidence            6678888888777543                78999999999998 5654  9999999999999999997 333 568


Q ss_pred             cCCCCCCEEecccCCCC-Cccchhhhh
Q psy8923          66 FHLEDLTTLDLSHNNIK-QIPDALENA   91 (273)
Q Consensus        66 ~~l~~L~~L~Ls~N~l~-~ip~~l~~w   91 (273)
                      .++++|+.|+|++|+++ ..|..+...
T Consensus       145 ~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A          145 GKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             GTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             hhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            89999999999999999 456666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.57  E-value=1e-07  Score=81.95  Aligned_cols=61  Identities=26%  Similarity=0.349  Sum_probs=48.8

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      ++|++|++++|.++.++ .+..+++|+.|++++|+++.  +| .+..+++|+.|++++|+++.++
T Consensus       243 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~--~~-~~~~l~~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          243 SQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISD--IS-VLNNLSQLNSLFLNNNQLGNED  303 (347)
T ss_dssp             TTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCGGG
T ss_pred             CCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCC--Ch-hhcCCCCCCEEECcCCcCCCcC
Confidence            36788888888888874 57788888888888888887  64 5678888888888888888444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.56  E-value=4.4e-08  Score=90.19  Aligned_cols=62  Identities=27%  Similarity=0.366  Sum_probs=28.1

Q ss_pred             ccEEEccCCCCCCchhhhcCCccC-------CEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccchhh
Q psy8923          23 TEHLSIVNNNLEKLFGELTELQCL-------RTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPDALE   89 (273)
Q Consensus        23 l~~L~l~~N~l~~lp~~~~~l~~L-------~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~~l~   89 (273)
                      |++|+|++|.|+.||. |..  +|       +.|+|++|+|+.  ||..++.+++|+.|+|++|+|+ .+|..+.
T Consensus       182 L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          182 LEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             CCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            4444444444444444 332  33       445555555544  4544444555555555555554 4444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.54  E-value=1e-09  Score=87.24  Aligned_cols=63  Identities=24%  Similarity=0.263  Sum_probs=54.5

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|+|++|.|+.+|..+..+++|+.|+|++|++++  +| .+..+++|+.|+|++|+++.+|.
T Consensus        70 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~  132 (198)
T 1ds9_A           70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGE  132 (198)
T ss_dssp             TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHH
T ss_pred             CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhH
Confidence            34577999999999999888888999999999999997  77 67788999999999999987765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.52  E-value=6.5e-08  Score=83.69  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=53.5

Q ss_pred             CCCceecC---CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccc-cCCCCCCE-EecccCCCCCccc
Q psy8923          13 SKSESVTI---GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTT-LDLSHNNIKQIPD   86 (273)
Q Consensus        13 ~~l~~~~l---~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~-L~Ls~N~l~~ip~   86 (273)
                      .+|..+|-   .+++.|+|++|+|+.|| ..|.+|++|++|+|++|++.+ .+|... .++++|.. +.++.|+|+.+|.
T Consensus        19 ~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~-~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           19 SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             TTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-EECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-ccChhHhhcchhhhhhhcccCCcccccCc
Confidence            34555542   47888999999999988 568899999999999998754 466544 36766553 5556677777665


Q ss_pred             hhh
Q psy8923          87 ALE   89 (273)
Q Consensus        87 ~l~   89 (273)
                      ..+
T Consensus        98 ~~f  100 (350)
T 4ay9_X           98 EAF  100 (350)
T ss_dssp             TSB
T ss_pred             hhh
Confidence            433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.51  E-value=2.4e-07  Score=83.06  Aligned_cols=52  Identities=27%  Similarity=0.309  Sum_probs=32.4

Q ss_pred             CCccccCCCCCceecCC------------CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCcc
Q psy8923           5 EPGTFCMASKSESVTIG------------LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKN   58 (273)
Q Consensus         5 ~p~~~~~~~~l~~~~l~------------~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~   58 (273)
                      +| .|+.+++|+.+.+.            +|++|++++|.++++| .++++++|+.|++++|++++
T Consensus       146 lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~  209 (454)
T 1jl5_A          146 LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK  209 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc
Confidence            56 47777777665432            5666777777766666 46666666666666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=1.3e-07  Score=78.49  Aligned_cols=63  Identities=27%  Similarity=0.264  Sum_probs=45.1

Q ss_pred             CCCccEEEccCCCCCCch---hhhcCCccCCEeeccCCcCccCCCCccccCCC--CCCEEecccCCCC-Ccc
Q psy8923          20 IGLTEHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVDLFHLE--DLTTLDLSHNNIK-QIP   85 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp---~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~--~L~~L~Ls~N~l~-~ip   85 (273)
                      +++|+.|+|++|+|++|+   ..+..+++|+.|+|++|+|++  + ..+..+.  +|+.|+|++|.++ .+|
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccC
Confidence            456777888888888754   556678888888888888886  4 3344444  7888888888877 455

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.45  E-value=4.1e-07  Score=81.52  Aligned_cols=76  Identities=25%  Similarity=0.269  Sum_probs=48.7

Q ss_pred             CCccccCCCCCceecC------------CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCC
Q psy8923           5 EPGTFCMASKSESVTI------------GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLT   72 (273)
Q Consensus         5 ~p~~~~~~~~l~~~~l------------~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~   72 (273)
                      +| .++.+++|+.+.+            ++|++|++++|.++.+| .++.+++|+.|++++|++++  +|..   +++|+
T Consensus       188 l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l~~~---~~~L~  260 (454)
T 1jl5_A          188 LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--LPDL---PPSLE  260 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--CCSC---CTTCC
T ss_pred             Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--cccc---ccccC
Confidence            45 4666666665433            25677777777777666 36677777777777777776  6643   35666


Q ss_pred             EEecccCCCCCccch
Q psy8923          73 TLDLSHNNIKQIPDA   87 (273)
Q Consensus        73 ~L~Ls~N~l~~ip~~   87 (273)
                      .|++++|+++.+|..
T Consensus       261 ~L~l~~N~l~~l~~~  275 (454)
T 1jl5_A          261 ALNVRDNYLTDLPEL  275 (454)
T ss_dssp             EEECCSSCCSCCCCC
T ss_pred             EEECCCCcccccCcc
Confidence            666666666666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.44  E-value=4.4e-07  Score=77.96  Aligned_cols=62  Identities=31%  Similarity=0.388  Sum_probs=50.0

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|++++|.|+.+|+ +..+++|++|++++|.++.  +| .+.++++|++|++++|+++.+|.
T Consensus        66 ~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~  127 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISP  127 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGG
T ss_pred             CCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchh
Confidence            466778888888888877 8888888888888888887  65 57788888888888888887765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.42  E-value=4.9e-07  Score=81.14  Aligned_cols=60  Identities=30%  Similarity=0.384  Sum_probs=32.4

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      +|++|+|++|.|+.+|+ +.++++|++|++++|.++.  +|. +.++++|++|+|++|+++.+|
T Consensus        69 ~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~  128 (466)
T 1o6v_A           69 NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDID  128 (466)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCEEECCCCccCCchh-hhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCCh
Confidence            44555555555555554 5555555555555555554  443 445555555555555555444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.41  E-value=4.2e-07  Score=84.56  Aligned_cols=38  Identities=24%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             ccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          44 QCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        44 ~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|+.|+|++|+|++  +|   ..+++|+.|+|++|+|+.+|.
T Consensus       221 ~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~~lp~  258 (622)
T 3g06_A          221 SGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLTSLPM  258 (622)
T ss_dssp             TTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCC
T ss_pred             CCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCCcCCc
Confidence            445555555555554  55   233555555555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.39  E-value=2.6e-07  Score=85.94  Aligned_cols=62  Identities=21%  Similarity=0.327  Sum_probs=49.5

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      ++|+.|+|++|.|+++|   ..+++|+.|+|++|+|+.  +|.   .+++|+.|+|++|+|+.||..+..
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~l~~  282 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPESLIH  282 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHHHhh
Confidence            56788888888888887   456788888888888887  886   567888888888888888876654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.37  E-value=4.5e-07  Score=81.41  Aligned_cols=62  Identities=31%  Similarity=0.385  Sum_probs=55.4

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|++++|.++++++ ++++++|++|++++|.++.  +|. +.++++|++|++++|+++.+|.
T Consensus        90 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~  151 (466)
T 1o6v_A           90 TKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITD--IDP-LKNLTNLNRLELSSNTISDISA  151 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECCCGG
T ss_pred             ccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCC--ChH-HcCCCCCCEEECCCCccCCChh
Confidence            477889999999999887 9999999999999999998  765 8899999999999999988764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.18  E-value=3.5e-07  Score=78.19  Aligned_cols=59  Identities=22%  Similarity=0.287  Sum_probs=42.1

Q ss_pred             CccEEEccCC-CCCC--chhhhcCCccCCEeeccCC-cCccCCCCccccCCC-CCCEEecccCC
Q psy8923          22 LTEHLSIVNN-NLEK--LFGELTELQCLRTLNLRYN-KIKNSGIPVDLFHLE-DLTTLDLSHNN   80 (273)
Q Consensus        22 ~l~~L~l~~N-~l~~--lp~~~~~l~~L~~L~l~~N-~l~~~~ip~~~~~l~-~L~~L~Ls~N~   80 (273)
                      +|++|+|++| .++.  +|..+..+++|+.|++++| .++...+|..+..++ +|+.|+|++|+
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            6677888887 6774  6666777788888888888 777412455566777 78888887773

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.15  E-value=3.9e-07  Score=79.09  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             CCCCCccccCCCCCceecCCCccEEEccCCCCCCch-----hhhcCCc-cCCEeeccCCcCccCCCCccccCC-----CC
Q psy8923           2 VGFEPGTFCMASKSESVTIGLTEHLSIVNNNLEKLF-----GELTELQ-CLRTLNLRYNKIKNSGIPVDLFHL-----ED   70 (273)
Q Consensus         2 ~g~~p~~~~~~~~l~~~~l~~l~~L~l~~N~l~~lp-----~~~~~l~-~L~~L~l~~N~l~~~~ip~~~~~l-----~~   70 (273)
                      +|.+|..+...++|        ++|+|++|.|+.++     ..|..++ +|+.|+|++|+++. ..+..+..+     ++
T Consensus        11 ~~~~~~~~~~~~~L--------~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A           11 SNPVEEFTSIPHGV--------TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPAN   81 (362)
T ss_dssp             CCHHHHHHTSCTTC--------CEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTT
T ss_pred             hHHHHHHHhCCCCc--------eEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCC
Confidence            44555555555555        33555555555432     3344444 45555555555543 222233322     44


Q ss_pred             CCEEecccCCCC
Q psy8923          71 LTTLDLSHNNIK   82 (273)
Q Consensus        71 L~~L~Ls~N~l~   82 (273)
                      |+.|+|++|+++
T Consensus        82 L~~L~Ls~n~l~   93 (362)
T 3goz_A           82 VTSLNLSGNFLS   93 (362)
T ss_dssp             CCEEECCSSCGG
T ss_pred             ccEEECcCCcCC
Confidence            555555555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.09  E-value=8.8e-07  Score=77.40  Aligned_cols=58  Identities=22%  Similarity=0.346  Sum_probs=36.0

Q ss_pred             cEEEccCCCCC--C---c-hhhhcCCccCCEeeccCCcCc----cCCCCccccCCCCCCEEecccCCCC
Q psy8923          24 EHLSIVNNNLE--K---L-FGELTELQCLRTLNLRYNKIK----NSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        24 ~~L~l~~N~l~--~---l-p~~~~~l~~L~~L~l~~N~l~----~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      ++|+|++|.|+  +   + |..+..+++|+.|+|++|.++    . .+|..+..+++|+.|+|++|+++
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~-~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS-ALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH-HHHHHGGGCTTCCEEECTTCCCC
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH-HHHHHHccCCCcCEEECCCCCCc
Confidence            55666666666  2   2 235666666677777766663    2 25666666666666666666666

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.06  E-value=1.3e-06  Score=74.51  Aligned_cols=68  Identities=24%  Similarity=0.294  Sum_probs=51.9

Q ss_pred             CCccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccC-CCC--Cccchhh
Q psy8923          21 GLTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN-NIK--QIPDALE   89 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N-~l~--~ip~~l~   89 (273)
                      ++|++|+|++|.++.  +|..+..+++|+.|+|++|.++. .+|..+..+++|+.|+|++| .++  .+|..+.
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH-HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence            456778888888875  67778888888888888888875 57777778888888888888 676  2555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.96  E-value=8.2e-06  Score=69.69  Aligned_cols=67  Identities=21%  Similarity=0.206  Sum_probs=56.1

Q ss_pred             CCCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCC-EEecccCCCCCccchhhh
Q psy8923          20 IGLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLT-TLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~-~L~Ls~N~l~~ip~~l~~   90 (273)
                      .++|+.|+|++|+++.|| ..|.++++|+.|+|++| ++.  |++..+ +|++|+ .++++. +++.|+...+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~--I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~  294 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKT--IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM  294 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cce--ehHHHhhCChhccEEEEEcc-cceEEchhhhh
Confidence            467888999999999998 77999999999999988 877  777655 889999 999988 78888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.95  E-value=1.1e-05  Score=59.46  Aligned_cols=55  Identities=22%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             cEEEccCCCCC--CchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCC
Q psy8923          24 EHLSIVNNNLE--KLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK   82 (273)
Q Consensus        24 ~~L~l~~N~l~--~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~   82 (273)
                      ..++-+++.++  .+|..+.  ++|+.|+|++|+|+.  ||..++ .+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence            46899999999  8996432  579999999999998  988766 8999999999999987

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.89  E-value=5.5e-06  Score=72.29  Aligned_cols=70  Identities=21%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             CCccEEEccCCCCC--Cch---hhhcCCccCCEeeccCCcCccC----CCCccccCCCCCCEEecccCCCC-----Cccc
Q psy8923          21 GLTEHLSIVNNNLE--KLF---GELTELQCLRTLNLRYNKIKNS----GIPVDLFHLEDLTTLDLSHNNIK-----QIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~--~lp---~~~~~l~~L~~L~l~~N~l~~~----~ip~~~~~l~~L~~L~Ls~N~l~-----~ip~   86 (273)
                      ++|++|+|++|.|+  ++|   ..+..+++|+.|+|++|+++..    .+|..+..+++|+.|+|++|+++     .+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            67899999999998  356   5788999999999999999831    14447789999999999999994     4555


Q ss_pred             hhhh
Q psy8923          87 ALEN   90 (273)
Q Consensus        87 ~l~~   90 (273)
                      .+..
T Consensus       239 ~l~~  242 (386)
T 2ca6_A          239 ALKS  242 (386)
T ss_dssp             HGGG
T ss_pred             HHcc
Confidence            4443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=1.4e-05  Score=68.18  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=56.6

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCC-EeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLR-TLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~-~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +|+.|+|++| ++.|+ ..|.++++|+ .+++++ +++.  |++. |.+|++|+.|+++.|+++.|+...+.
T Consensus       251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~--I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~  318 (329)
T 3sb4_A          251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA--IEFGAFMGCDNLRYVLATGDKITTLGDELFG  318 (329)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE--ECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred             CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE--EchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence            4577999998 99997 8899999999 999998 8887  7754 55999999999999999999986664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.72  E-value=1.1e-05  Score=69.89  Aligned_cols=63  Identities=24%  Similarity=0.254  Sum_probs=36.0

Q ss_pred             CccEEEccCCCCCCc-hhhhcCC-----ccCCEeeccCCcCccCCCCcc----ccCC-CCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKL-FGELTEL-----QCLRTLNLRYNKIKNSGIPVD----LFHL-EDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~l-p~~~~~l-----~~L~~L~l~~N~l~~~~ip~~----~~~l-~~L~~L~Ls~N~l~~ip   85 (273)
                      +|++|+|++|.|+.. +..+..+     ++|+.|+|++|.++. ..+..    +..+ ++|+.|+|++|+++..+
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  125 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKS  125 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh-HHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence            345566777666664 3445543     666666666666665 22222    2233 56666666666666443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.56  E-value=3e-05  Score=68.94  Aligned_cols=61  Identities=25%  Similarity=0.236  Sum_probs=40.1

Q ss_pred             CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCC----CCcccc-CCCCCCEEecccCCCCC
Q psy8923          22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSG----IPVDLF-HLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~----ip~~~~-~l~~L~~L~Ls~N~l~~   83 (273)
                      +|++|+|++|.++.     ++..+..+++|+.|++++|.++. .    +++.+. .+++|+.|+|++|+++.
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-VGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh-HHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            66777777777776     45666677777777777777764 1    112222 46777777777777774

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.55  E-value=2.6e-05  Score=67.94  Aligned_cols=62  Identities=19%  Similarity=0.199  Sum_probs=36.7

Q ss_pred             CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923          21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      ..|+.|+|++|.|+.     ++..+..+++|++|+|++|.|+..   .++..+..+++|+.|+|++|+|+
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            345667777776664     334455666677777777766530   12334445566666666666666

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.52  E-value=2.2e-05  Score=69.80  Aligned_cols=69  Identities=16%  Similarity=0.148  Sum_probs=51.4

Q ss_pred             CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCCCCcccc-----CCCCCCEEecccCCCC-----Ccc
Q psy8923          21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSGIPVDLF-----HLEDLTTLDLSHNNIK-----QIP   85 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-----~l~~L~~L~Ls~N~l~-----~ip   85 (273)
                      ++|++|+|++|.|+.     +|..+..+++|+.|+|++|.++. ..+..+.     ..++|+.|+|++|+++     .+|
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  391 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA  391 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence            478889999999885     46677788999999999998886 3233333     2678999999999888     455


Q ss_pred             chhhh
Q psy8923          86 DALEN   90 (273)
Q Consensus        86 ~~l~~   90 (273)
                      ..+..
T Consensus       392 ~~l~~  396 (461)
T 1z7x_W          392 ATLLA  396 (461)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            54443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.51  E-value=3.8e-05  Score=66.91  Aligned_cols=63  Identities=21%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             CCccEEEccCCCCCCch-hhh-----cCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCCC
Q psy8923          21 GLTEHLSIVNNNLEKLF-GEL-----TELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~-----~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~~   83 (273)
                      .+|+.|+|++|.|+... ..+     ...++|+.|+|++|.|+..   .++..+..+++|++|+|++|+|+.
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence            35677888888887532 222     2457788888888887640   133344567788888888888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.48  E-value=2.8e-05  Score=71.43  Aligned_cols=62  Identities=11%  Similarity=0.038  Sum_probs=29.2

Q ss_pred             CCccEEEccCC--CCCC-chhhh-cCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          21 GLTEHLSIVNN--NLEK-LFGEL-TELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        21 ~~l~~L~l~~N--~l~~-lp~~~-~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      ++|++|+|+.+  .++. .+..+ ..+++|++|++++|.++...++..+.++++|+.|+|++|+++
T Consensus       436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence            34455555432  2443 22222 235555555555555543123333345555555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.37  E-value=9.7e-05  Score=61.20  Aligned_cols=54  Identities=20%  Similarity=0.116  Sum_probs=42.9

Q ss_pred             CCCccEEEccCCCCCCch--hhhcCCccCCEeeccCCcCccCCCCc-------cccCCCCCCEEe
Q psy8923          20 IGLTEHLSIVNNNLEKLF--GELTELQCLRTLNLRYNKIKNSGIPV-------DLFHLEDLTTLD   75 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp--~~~~~l~~L~~L~l~~N~l~~~~ip~-------~~~~l~~L~~L~   75 (273)
                      +++|+.|+|++|+|+++.  ..+..+ +|+.|+|++|.+++ .+|.       .+..+++|+.||
T Consensus       195 l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~-~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          195 APNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD-TFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             STTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG-GCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc-ccCcchhHHHHHHHHCcccCeEC
Confidence            456788999999999983  344444 99999999999985 6763       245789999887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.29  E-value=0.00011  Score=57.25  Aligned_cols=63  Identities=14%  Similarity=0.126  Sum_probs=45.0

Q ss_pred             CCccEEEccCC-CCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCCC
Q psy8923          21 GLTEHLSIVNN-NLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        21 ~~l~~L~l~~N-~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~~   83 (273)
                      +.|+.|+|++| .|+.     +...+...++|+.|+|++|.|...   .+...+...++|+.|+|++|+|+.
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            45677888888 8874     346677778888888888888640   123334455788888888888873

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.27  E-value=0.00031  Score=51.56  Aligned_cols=37  Identities=38%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCc
Q psy8923          21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIK   57 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~   57 (273)
                      .+|+.|+|++|+|+.|| ..|..+++|+.|+|++|.+.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            37899999999999998 77899999999999999885

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.22  E-value=0.0005  Score=60.41  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=27.9

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~   82 (273)
                      +|+.+++.+| ++.|+ ..|.+ .+|+.+.+ .|+++.  |+...+ +|++|+.++++.|.++
T Consensus       227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~--I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTN--IASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             TCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCE--ECTTTTTTCTTCCEEEEESSCCC
T ss_pred             CCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccE--EChhHhhCCCCCCEEEeCCcccc
Confidence            3444555543 45554 44444 55555555 334444  443333 5555666655555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.14  E-value=0.00021  Score=55.78  Aligned_cols=61  Identities=23%  Similarity=0.247  Sum_probs=48.3

Q ss_pred             CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEec--ccCCCC
Q psy8923          22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDL--SHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~L--s~N~l~   82 (273)
                      .|++|+|++|.|+.     |...+...++|++|+|++|.|...   .+...+...++|+.|+|  ++|.++
T Consensus        66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A           66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence            57889999999984     446677778999999999999751   13455667788999999  889987

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.91  E-value=0.00015  Score=62.79  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=41.6

Q ss_pred             cCCCccEEEccC--CC------CCCchhhh--cCCccCCEeeccCCcCccCCCCcccc---CCCCCCEEecccCCCCC
Q psy8923          19 TIGLTEHLSIVN--NN------LEKLFGEL--TELQCLRTLNLRYNKIKNSGIPVDLF---HLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        19 ~l~~l~~L~l~~--N~------l~~lp~~~--~~l~~L~~L~l~~N~l~~~~ip~~~~---~l~~L~~L~Ls~N~l~~   83 (273)
                      .+++|+.|+|+.  |.      +..|.+.+  ..+++|+.|+|++|.+.. ..+..+.   .+++|+.|+||.|+|+.
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            467888888853  22      22222233  247889999998888874 3333333   46788999998888874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.85  E-value=0.00026  Score=65.01  Aligned_cols=66  Identities=11%  Similarity=0.131  Sum_probs=35.7

Q ss_pred             CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCcc---CCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKN---SGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~---~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ++|++|+|++|.++.     ++..+..+++|+.|++++|.++.   +.++..+.++++|+.|+|++|.++.+|.
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~  237 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVG  237 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHH
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHH
Confidence            355666666665543     22344455666666666666652   0123333456666666666666655554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.77  E-value=0.0016  Score=57.13  Aligned_cols=65  Identities=15%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             CccEEEccCCCCC-----Cch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLE-----KLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~-----~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +|+.+.+.+|.+.     .|+ ..|.++++|+.+.|. |+++.  |+...+ +|++|+.++|..| ++.|+...+.
T Consensus       272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~--I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~  343 (401)
T 4fdw_A          272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI--LGQGLLGGNRKVTQLTIPAN-VTQINFSAFN  343 (401)
T ss_dssp             TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE--ECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred             CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE--EhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence            4466777777665     465 678888888888887 45776  666544 7788888888543 6777665554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.62  E-value=0.00046  Score=63.24  Aligned_cols=60  Identities=12%  Similarity=0.074  Sum_probs=41.9

Q ss_pred             CCccEEEccCCCCCCc-hhhhcC-CccCCEeeccCCcCccCCCCccc-cCCCCCCEEecccCCCC
Q psy8923          21 GLTEHLSIVNNNLEKL-FGELTE-LQCLRTLNLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~l-p~~~~~-l~~L~~L~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~   82 (273)
                      ++|+.|+|++ .++.. +..++. +++|+.|+|++|.++. ..+..+ .++++|+.|+|++|+++
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~-~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD-LGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH-HHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH-HHHHHHHhcCCCcCEEECcCCCCc
Confidence            4677788876 66653 345554 7888888888888865 333333 46788888888888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.04  E-value=0.003  Score=48.74  Aligned_cols=60  Identities=12%  Similarity=0.219  Sum_probs=45.1

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCc-CccCCCCccccCC----CCCCEEecccCC-CC
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNK-IKNSGIPVDLFHL----EDLTTLDLSHNN-IK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~-l~~~~ip~~~~~l----~~L~~L~Ls~N~-l~   82 (273)
                      .|+.|||+++.|+..- ..+..+++|+.|+|+++. ++. .--..+..+    ++|++|+|+++. +|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            6899999999998643 567899999999999985 765 111223343    479999999864 66

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.83  E-value=0.0084  Score=51.75  Aligned_cols=65  Identities=12%  Similarity=0.125  Sum_probs=50.8

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      .|+.+.+.. .++.|+ ..|.++++|+.+.+.++.++.  |++..+ +|++|+.+.|..+ ++.|+...+.
T Consensus       264 ~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  330 (379)
T 4h09_A          264 ALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK  330 (379)
T ss_dssp             TCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             hhccccccc-cceeccccccccccccccccccccccce--ehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence            566677754 477777 778999999999999999987  876555 8899999999754 7888776554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.78  E-value=0.0029  Score=57.91  Aligned_cols=61  Identities=10%  Similarity=0.026  Sum_probs=46.4

Q ss_pred             CCCccEEEcc--C----CCCCCch------hhhcCCccCCEeeccCCcCccCCCCccccC-CCCCCEEecccCCCC
Q psy8923          20 IGLTEHLSIV--N----NNLEKLF------GELTELQCLRTLNLRYNKIKNSGIPVDLFH-LEDLTTLDLSHNNIK   82 (273)
Q Consensus        20 l~~l~~L~l~--~----N~l~~lp------~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~-l~~L~~L~Ls~N~l~   82 (273)
                      +++|+.|+|+  +    |.++..|      ..+..+++|+.|+|++ .++. ..+..+.. +++|+.|+|++|.++
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~-~~~~~l~~~~~~L~~L~L~~~~i~  469 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD-KVFEYIGTYAKKMEMLSVAFAGDS  469 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH-HHHHHHHHHCTTCCEEEEESCCSS
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH-HHHHHHHHhchhccEeeccCCCCc
Confidence            6788889998  4    7788543      3467789999999987 6664 34445554 889999999999987

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.64  E-value=0.028  Score=48.78  Aligned_cols=64  Identities=16%  Similarity=0.311  Sum_probs=38.2

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      .|+.+.+. +.++.|+ ..|.++++|+.+.|..+ ++.  |.+..+ +|++|+.+.+.. .++.|+...+.
T Consensus       289 ~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~--I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~  354 (394)
T 4gt6_A          289 ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQ--ILDDAFAGCEQLERIAIPS-SVTKIPESAFS  354 (394)
T ss_dssp             TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTTCTTCCEEEECT-TCCBCCGGGGT
T ss_pred             ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccE--ehHhHhhCCCCCCEEEECc-ccCEEhHhHhh
Confidence            45556654 4566665 56777777777777643 555  554433 667777777753 36666654443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.55  E-value=0.019  Score=49.42  Aligned_cols=66  Identities=20%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALENA   91 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~w   91 (273)
                      .|+.+.+..+ ++.|+ ..|.++.+|+.+.+..+ ++.  ++...+ +|++|+.+.+..|.++.|+...+.-
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~--i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKT--VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSE--ECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-cee--ccccccccccccccccccccccceehhhhhcC
Confidence            5667777665 77786 78899999999999754 666  776555 8999999999999999998876653

>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}

Probab=95.29  E-value=0.033  Score=46.49  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=38.6

Q ss_pred             eEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEE------CCC---eEEEEeCCCCCHHHHHHhhh
Q psy8923         164 RLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLD------AGL---KLFIWNGPKAKNTFVFLLDA  224 (273)
Q Consensus       164 ~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild------~~~---~~~vW~G~~s~~~e~~~~~~  224 (273)
                      .+.||.+-         ...+||. ....+.++||||+-      .+.   .+|.|.|+.|+.+|+..|..
T Consensus        36 ~iWrIe~~---------~~~~v~~~~~G~Fy~gd~Yivl~t~~~~~g~~~~~i~~W~G~~ss~de~g~aa~   97 (297)
T 3tu5_B           36 QIWRVEKF---------DLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAI   97 (297)
T ss_dssp             EEEEEETT---------EEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHH
T ss_pred             EEEEEcCC---------EEEECCHHHcCeecCCCeEEEeEeEECCCCceeEEEEEEeCCCCChhHHHHHHH
Confidence            56676543         5667764 45788999999984      222   48999999999999887653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.27  E-value=0.035  Score=48.18  Aligned_cols=55  Identities=13%  Similarity=0.320  Sum_probs=45.7

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCC
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNN   80 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~   80 (273)
                      +|+.+.|.+| ++.|. ..|.++++|+.+.+..+ ++.  |+...+ +|++|+.++++.|.
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~--I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK--IPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB--CCGGGGTTCTTCCEEEESSCH
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE--EhHhHhhCCCCCCEEEECCce
Confidence            6788888764 88886 88999999999999754 777  876555 99999999998765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.17  E-value=0.011  Score=46.30  Aligned_cols=61  Identities=18%  Similarity=0.215  Sum_probs=44.3

Q ss_pred             CccEEEccCC-CCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVNN-NLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N-~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      .|+.|+|++| .|..     |-..+..=+.|+.|+|++|+|...   .|-+.+..-+.|+.|+|+.|+|+
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            6788999985 8873     346677778899999999998750   12223334478999999999987

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.16  E-value=0.031  Score=48.52  Aligned_cols=64  Identities=11%  Similarity=0.240  Sum_probs=40.8

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +|+.+.+.++ ++.|+ ..|.++++|+.++|.. .++.  |+...+ +|++|+.+++..| ++.|+...+.
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~--I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  363 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEE--IGKRSFRGCTSLSNINFPLS-LRKIGANAFQ  363 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCE--ECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCC-cccE--EhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence            4555666543 66665 6677777777777764 3665  655443 7777777777655 6666654443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.11  E-value=0.0067  Score=52.43  Aligned_cols=63  Identities=14%  Similarity=0.113  Sum_probs=43.5

Q ss_pred             CCCccEEEccCCCCCCch-hhhc--CCccCCEeeccC--CcCccC----CCCcccc--CCCCCCEEecccCCCC
Q psy8923          20 IGLTEHLSIVNNNLEKLF-GELT--ELQCLRTLNLRY--NKIKNS----GIPVDLF--HLEDLTTLDLSHNNIK   82 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp-~~~~--~l~~L~~L~l~~--N~l~~~----~ip~~~~--~l~~L~~L~Ls~N~l~   82 (273)
                      +++|+.|+|..+.++.-. ..+.  .+++|+.|+|+.  |...+.    .+...+.  .+++|+.|+|++|.++
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~  265 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ  265 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence            468999999999887522 4444  789999999864  222110    0222232  5799999999999987

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.55  E-value=0.032  Score=48.47  Aligned_cols=54  Identities=13%  Similarity=0.234  Sum_probs=44.1

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccC
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHN   79 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N   79 (273)
                      +|+.++|.+ .++.|+ .+|.++++|+.+.+..| ++.  |+...+ +|++|+.++++.|
T Consensus       321 ~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~--I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          321 SLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRK--IGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCE--ECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccE--ehHHHhhCCCCCCEEEECCC
Confidence            567788864 488896 88999999999999877 877  776555 9999999998653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=94.24  E-value=0.02  Score=43.99  Aligned_cols=60  Identities=20%  Similarity=0.339  Sum_probs=44.2

Q ss_pred             CCCccEEEccCC-CCCCch-hhhcCC----ccCCEeeccCCc-CccCCCCccccCCCCCCEEecccCC
Q psy8923          20 IGLTEHLSIVNN-NLEKLF-GELTEL----QCLRTLNLRYNK-IKNSGIPVDLFHLEDLTTLDLSHNN   80 (273)
Q Consensus        20 l~~l~~L~l~~N-~l~~lp-~~~~~l----~~L~~L~l~~N~-l~~~~ip~~~~~l~~L~~L~Ls~N~   80 (273)
                      +++|+.|+|+++ .|+.-- ..+..+    ++|+.|+|+++. ++...+ ..+..+++|+.|+|++..
T Consensus        84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A           84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESCT
T ss_pred             CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCCC
Confidence            457899999998 488532 455554    489999999975 776222 345688999999999853

>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A

Probab=93.50  E-value=0.091  Score=37.93  Aligned_cols=52  Identities=13%  Similarity=0.259  Sum_probs=38.0

Q ss_pred             eEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEEC-----C---CeEEEEeCCCCCHHHHHHhhh
Q psy8923         164 RLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDA-----G---LKLFIWNGPKAKNTFVFLLDA  224 (273)
Q Consensus       164 ~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~-----~---~~~~vW~G~~s~~~e~~~~~~  224 (273)
                      .+.|+.+.         ...+||. ....+.++||||+--     +   -.+|.|.|+.|+.+|+..|..
T Consensus        19 ~vWrIe~~---------~~~~vp~~~~G~Fy~gd~YIvl~t~~~~g~~~~~i~~W~G~~ss~de~g~Aa~   79 (126)
T 2vik_A           19 QIWRIENM---------EMVPVPTKSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAI   79 (126)
T ss_dssp             EEEECGGG---------SCCEECTTTTTCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCC---------EEEECChhhcCeeCCCCeEEEEEeccCCCceeEEEEEEeCCCCCchhHHHHHH
Confidence            46666543         3456654 467899999999842     2   248999999999999988754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.72  E-value=0.049  Score=42.65  Aligned_cols=60  Identities=15%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCC
Q psy8923          22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNI   81 (273)
Q Consensus        22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l   81 (273)
                      .|+.|+|++|.|..     |-..+..=+.|+.|+|+.|+|...   .|-+++..-+.|+.|+|++|..
T Consensus        71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~  138 (197)
T 1pgv_A           71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  138 (197)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcC
Confidence            67999999999993     456676778999999999999851   1222344446799999987643

>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*

Probab=92.01  E-value=0.09  Score=38.07  Aligned_cols=66  Identities=17%  Similarity=0.253  Sum_probs=44.1

Q ss_pred             eeEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceE
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFV  241 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v  241 (273)
                      ..+.|+.+.         ...+||. ....+.++||||+-     |......                   |.       
T Consensus        20 l~vWrIe~~---------~~~~vp~~~~G~Fy~gd~YIvl-----~ty~~~~-------------------g~-------   59 (128)
T 3cip_G           20 LQIWRVEKF---------DLVPVPTNLYGDFFTGDAYVIL-----KTVQLRN-------------------GN-------   59 (128)
T ss_dssp             EEEEEEETT---------EEEECCGGGTTEEETTCEEEEE-----EEEECTT-------------------SC-------
T ss_pred             eEEEEEeCC---------EEEECChHHcCeecCCCeEEEE-----EEEecCC-------------------Cc-------
Confidence            356777744         5666764 45788999999985     2221100                   00       


Q ss_pred             EEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923         242 FLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       242 ~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                          ....||.|+|++|+..|+..|...|.+
T Consensus        60 ----~~~~i~~W~G~~ss~de~g~Aa~~ave   86 (128)
T 3cip_G           60 ----LQYDLHYWLGNECSQDESGAAAIFTVQ   86 (128)
T ss_dssp             ----EEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ----eEEEEEEEcCCCCCcchHHHHHHHHHH
Confidence                134799999999999999988665543

>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*

Probab=91.64  E-value=0.1  Score=38.76  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             eeEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceE
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFV  241 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v  241 (273)
                      ..+.++.+.         ...+||. ....+.++||||+-     |.....                   .+.       
T Consensus        39 l~VWrIe~~---------~~v~vp~~~~G~FysgD~YIVl-----~ty~~~-------------------~g~-------   78 (150)
T 2ff3_A           39 LQIWRVEKF---------DLVPVPTNLYGDFFTGDAYVIL-----KTVQLR-------------------NGN-------   78 (150)
T ss_dssp             EEEEEEETT---------EEEECCGGGTTEEETTSEEEEE-----EEEECT-------------------TSS-------
T ss_pred             eEEEEEeCC---------EEEECChHHcCeecCCCeEEEE-----EEEecC-------------------CCc-------
Confidence            356777644         5666764 45788999999985     322110                   000       


Q ss_pred             EEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923         242 FLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       242 ~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                          ....||.|+|++|+..|+..|...|.+
T Consensus        79 ----~~~~IyfW~G~~ss~de~gaAA~~ave  105 (150)
T 2ff3_A           79 ----LQYDLHYWLGNECSQDESGAAAIFTVQ  105 (150)
T ss_dssp             ----EEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ----eEEEEEEEeCCCCCchhHHHHHHHHHH
Confidence                134799999999999999988665544

>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1

Probab=90.58  E-value=0.15  Score=37.85  Aligned_cols=66  Identities=18%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             eeEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceE
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFV  241 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v  241 (273)
                      ..+.||.+.         ...+||. ....+.++||||+-     |.....                   .|.       
T Consensus        17 l~VWrIe~~---------~~~~vp~~~~G~Fy~gd~YIvl-----~ty~~~-------------------~g~-------   56 (147)
T 1t44_G           17 LQIWRVEKF---------DLVPVPTNLYGDFFTGDAYVIL-----KTVQLR-------------------NGN-------   56 (147)
T ss_dssp             EEEEEEETT---------EEEECCGGGTTEEETTCEEEEE-----EEEECT-------------------TSC-------
T ss_pred             eEEEEEeCC---------EEEECChHHcCeecCCCeEEEE-----EEEecC-------------------CCc-------
Confidence            356777644         5666764 45788999999985     322110                   000       


Q ss_pred             EEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923         242 FLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       242 ~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                          ....||.|+|++|+..|+..|...|.+
T Consensus        57 ----~~~~i~~W~G~~ss~de~g~Aa~~ave   83 (147)
T 1t44_G           57 ----LQYDLHYWLGNECSQDESGAAAIFTVQ   83 (147)
T ss_dssp             ----EEEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             ----eEEEEEEEeCCCCChhHHHHHHHHHHH
Confidence                134799999999999999988665543

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=88.85  E-value=0.26  Score=46.60  Aligned_cols=26  Identities=35%  Similarity=0.713  Sum_probs=22.9

Q ss_pred             eEEEEeCCceEEEEeCCCcchHhHHh
Q psy8923         240 FVFLLDAGLKLFIWNGPKAKNTFKSK  265 (273)
Q Consensus       240 ~v~~ld~~~~~~~w~G~~a~~~~~~~  265 (273)
                      -|||||+|..+|+|+|+.++++--.+
T Consensus       640 giyLlD~g~~i~lw~G~~v~~~ll~d  665 (751)
T 3eh1_A          640 GAFLMDCGSVFYIWVGKGCDNNFIED  665 (751)
T ss_dssp             SEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred             CEEEEECCCEEEEEECCCCCHHHHHH
Confidence            39999999999999999999876543

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=87.45  E-value=0.46  Score=45.34  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=23.1

Q ss_pred             ceEEEEeCCceEEEEeCCCcchHhHHh
Q psy8923         239 TFVFLLDAGLKLFIWNGPKAKNTFKSK  265 (273)
Q Consensus       239 ~~v~~ld~~~~~~~w~G~~a~~~~~~~  265 (273)
                      +.+||+|+|..+|+|+|+.++++--.+
T Consensus       681 ~g~yLld~G~~i~lwvg~~~~~~l~~~  707 (810)
T 1pcx_A          681 YGLYLIDNGNELFLWMGGDAVPALVFD  707 (810)
T ss_dssp             TCEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred             CCEEEEECCCEEEEEeCCCCCHHHHHH
Confidence            459999999999999999998775443

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=87.09  E-value=0.52  Score=44.55  Aligned_cols=36  Identities=31%  Similarity=0.552  Sum_probs=31.4

Q ss_pred             cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHH
Q psy8923         186 PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFL  221 (273)
Q Consensus       186 ~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~  221 (273)
                      +++.+++.++.+|++|++..+|+|.|+.+++.-..-
T Consensus       630 ~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~ll~d  665 (751)
T 3eh1_A          630 KLSAEKLTREGAFLMDCGSVFYIWVGKGCDNNFIED  665 (751)
T ss_dssp             CSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred             cCCHHHcccCCEEEEECCCEEEEEECCCCCHHHHHH
Confidence            347889999999999999999999999999885543

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=86.30  E-value=0.45  Score=45.09  Aligned_cols=26  Identities=31%  Similarity=0.746  Sum_probs=22.7

Q ss_pred             eEEEEeCCceEEEEeCCCcchHhHHh
Q psy8923         240 FVFLLDAGLKLFIWNGPKAKNTFKSK  265 (273)
Q Consensus       240 ~v~~ld~~~~~~~w~G~~a~~~~~~~  265 (273)
                      -|||||+|..+|+|+|+.++++--.+
T Consensus       651 giyLlD~g~~i~lw~G~~v~~~~l~d  676 (766)
T 3eh2_A          651 DIYLLENGLNLFLWVGASVQQGVVQS  676 (766)
T ss_dssp             CEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred             cEEEEEcCcEEEEEecCCCCHHHHHH
Confidence            39999999999999999998875543

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=86.28  E-value=0.76  Score=43.85  Aligned_cols=37  Identities=32%  Similarity=0.655  Sum_probs=32.7

Q ss_pred             EecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923         184 PVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF  220 (273)
Q Consensus       184 ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~  220 (273)
                      .++++.+.|.++.+|++|+|..+|+|.|+.+++.-.+
T Consensus       670 ~l~Ls~~~l~~~g~yLld~G~~i~lwvg~~~~~~l~~  706 (810)
T 1pcx_A          670 PINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVF  706 (810)
T ss_dssp             BCCSSTTSCCTTCEEEEECSSEEEEEECTTCCHHHHH
T ss_pred             cccCCHHHhCcCCEEEEECCCEEEEEeCCCCCHHHHH
Confidence            4678889999999999999999999999999877443

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=85.98  E-value=0.57  Score=44.44  Aligned_cols=26  Identities=31%  Similarity=0.650  Sum_probs=23.1

Q ss_pred             eEEEEeCCceEEEEeCCCcchHhHHh
Q psy8923         240 FVFLLDAGLKLFIWNGPKAKNTFKSK  265 (273)
Q Consensus       240 ~v~~ld~~~~~~~w~G~~a~~~~~~~  265 (273)
                      -|||||+|..+|+|+|+.++++-..+
T Consensus       655 giyLLD~g~~i~lw~G~~v~~~l~~~  680 (770)
T 3efo_B          655 GIFLLANGLHMFLWLGVSSPPELIQG  680 (770)
T ss_dssp             CEEEEECSSEEEEEECTTCCHHHHHH
T ss_pred             cEEEEECCcEEEEEecCCCCHHHHHH
Confidence            49999999999999999999876654

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=85.76  E-value=0.59  Score=45.23  Aligned_cols=25  Identities=32%  Similarity=0.638  Sum_probs=22.0

Q ss_pred             ceEEEEeCCceEEEEeCCCcchHhH
Q psy8923         239 TFVFLLDAGLKLFIWNGPKAKNTFK  263 (273)
Q Consensus       239 ~~v~~ld~~~~~~~w~G~~a~~~~~  263 (273)
                      +.+||+|+|..+|+|+|+.++++--
T Consensus       797 ~g~yLld~G~~i~lWvG~~~~p~ll  821 (926)
T 1m2v_B          797 YGLYLIDNGNELFLWMGGDAVPALV  821 (926)
T ss_dssp             TCEEEEECSSEEEEEECTTCCSGGG
T ss_pred             CCEEEEECCCEEEEEecCCCCHHHH
Confidence            4599999999999999999987643

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=85.69  E-value=0.68  Score=43.91  Aligned_cols=55  Identities=27%  Similarity=0.438  Sum_probs=41.2

Q ss_pred             eeeEEEEecCcccCCCCc-eEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923         162 TTRLYRVHAPLHQAQASS-IHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF  220 (273)
Q Consensus       162 ~~~L~~v~g~~~~~~~~~-~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~  220 (273)
                      -|+||.++.-.    ... ..-..++++.+++.++.+|++|++..+|+|.|+..++.-..
T Consensus       620 yP~L~~~h~~~----~~~~~~P~~v~ls~~~l~~~giyLlD~g~~i~lw~G~~v~~~~l~  675 (766)
T 3eh2_A          620 YPRLLPLTKSP----VESTTEPPAVRASEERLSNGDIYLLENGLNLFLWVGASVQQGVVQ  675 (766)
T ss_dssp             SCEEEECSSCC----CSCC--CCCBCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHH
T ss_pred             hheEEEeecCC----cccccCCCCcCCcHHHcCCCcEEEEEcCcEEEEEecCCCCHHHHH
Confidence            47899887430    011 11224678899999999999999999999999999888543

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=85.25  E-value=0.84  Score=44.17  Aligned_cols=34  Identities=29%  Similarity=0.592  Sum_probs=31.2

Q ss_pred             EecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHH
Q psy8923         184 PVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNT  217 (273)
Q Consensus       184 ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~  217 (273)
                      .++++.+.|.++.+|++|+|..+|+|.|+.+++.
T Consensus       786 ~l~Ls~~~l~~~g~yLld~G~~i~lWvG~~~~p~  819 (926)
T 1m2v_B          786 PINATSSLFERYGLYLIDNGNELFLWMGGDAVPA  819 (926)
T ss_dssp             CBCSCSTTCCTTCEEEEECSSEEEEEECTTCCSG
T ss_pred             cccCcHHHhccCCEEEEECCCEEEEEecCCCCHH
Confidence            4678899999999999999999999999999865

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=85.10  E-value=0.73  Score=43.70  Aligned_cols=56  Identities=23%  Similarity=0.390  Sum_probs=41.6

Q ss_pred             eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923         162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF  220 (273)
Q Consensus       162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~  220 (273)
                      -|+||.++.-..   .....-..++++.+++.++.+|++|++..+|+|.|+..++.-..
T Consensus       624 yP~L~~~h~l~~---~~~~~P~~v~ls~~~l~~~giyLLD~g~~i~lw~G~~v~~~l~~  679 (770)
T 3efo_B          624 YPQLLPIHTLDV---KSTMLPAAVRCSESRLSEEGIFLLANGLHMFLWLGVSSPPELIQ  679 (770)
T ss_dssp             SCEEEECTTCCS---SSCSCCCCCCSSGGGCCTTCEEEEECSSEEEEEECTTCCHHHHH
T ss_pred             ccceEEEecccc---ccccCCCCcCCcHHHcCCCcEEEEECCcEEEEEecCCCCHHHHH
Confidence            478998864210   01111234678899999999999999999999999999987544

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=82.53  E-value=1.2  Score=42.36  Aligned_cols=45  Identities=24%  Similarity=0.357  Sum_probs=37.6

Q ss_pred             eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCC
Q psy8923         162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA  214 (273)
Q Consensus       162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s  214 (273)
                      .|+||.++..      .  ....++++.+++.++.+|++|++..+|+|.|+..
T Consensus       624 yP~L~~~~~~------~--~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v  668 (769)
T 2nut_A          624 QPILYAYSFS------G--PPEPVLLDSSSILADRILLMDTFFQILIYHGETI  668 (769)
T ss_dssp             SCEEEEECSS------S--SCEECCSSGGGCCTTCEEEEECSSEEEEEECHHH
T ss_pred             cCEEEeccCC------C--CCCceeCCHHHccCCCEEEEECCCEEEEEECCcc
Confidence            4789988865      1  2456889999999999999999999999999755

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=82.05  E-value=1.1  Score=42.41  Aligned_cols=45  Identities=24%  Similarity=0.370  Sum_probs=37.5

Q ss_pred             eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCC
Q psy8923         162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA  214 (273)
Q Consensus       162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s  214 (273)
                      .|+||.++..      .  ....++++..++.++.+|++|++..+|+|.|...
T Consensus       626 yP~L~~~~~~------~--~P~~v~Ls~~~l~~~gi~LLD~g~~i~i~~G~~v  670 (768)
T 1m2o_A          626 QPTLTSFSME------D--DPQPVLLDSISVKPNTILLLDTFFFILIYHGEQI  670 (768)
T ss_dssp             SCEEEEECSS------S--CCEECCSBGGGCCTTCEEEEECSSEEEEEECHHH
T ss_pred             CCeEEEecCC------C--CCcceeCcHHHcCCCCEEEEECCCEEEEEECCcc
Confidence            4789988755      1  2456889999999999999999999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	273
d1j72a1	114	d.109.1.1 (A:11-124) Macrophage capping protein Ca	5e-17
d3cipg1	124	d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens)	1e-15
d2fh1a1	121	d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapien	6e-15
d2vika_	126	d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chic	3e-14
d1j72a2	116	d.109.1.1 (A:125-240) Macrophage capping protein C	2e-10
d1svya_	102	d.109.1.1 (A:) Severin, domain 2 {Dictyostelium di	4e-09
d2fh1a2	96	d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien	1e-08
d2fh1a2	96	d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapien	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d1kcqa_	104	d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax	1e-07
d1kcqa_	104	d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [Tax	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d2fh1a3	113	d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapien	3e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1d0na3	121	d.109.1.1 (A:263-383) Gelsolin {Horse (Equus cabal	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001

>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (179), Expect = 5e-17
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASG 152
           +++ D++   A+ AV L ++L       RE QG+ES+ F+S F  G+ Y EGG   SG
Sbjct: 58  QSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGG-VESG 114

>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 1e-15
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
           + + D+   +AI  V L ++L       RE QG ES  FL  F +G+ Y +GG  ASGF
Sbjct: 67  ECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGF 124

>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (164), Expect = 6e-15
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYI-EGGRTASGF 153
           ++T D+ A SAI    L   L       R  QG E    +SLF      I +GG +  G 
Sbjct: 59  QSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGG 118

>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Villin, domain 1 (res. 1-126)
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.6 bits (160), Expect = 3e-14
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 95  KATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF 153
            ++ D++  +AI+   +  +L +     RE QG ESE F + F  G+ Y +GG  ASG 
Sbjct: 68  NSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQGG-VASGM 125

>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 155 TVEDTVYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            V + V   RLY+V    +      I      +  +S +    F+LD G  +F W G K+
Sbjct: 4   VVPNEVVVQRLYQVKGKKN------IRATERALNWDSFNTGDCFILDLGQNIFAWCGGKS 57

>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Severin, domain 2
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 50.7 bits (121), Expect = 4e-09
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 161 YTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           Y  RL  +    +        +  VP+ + SL+    FLLDAGL ++ +NG K+
Sbjct: 2   YKPRLLHISGDKN------AKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKS 49

>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 1e-08
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
           +TRL++V A        +     V   + +L+    F+L      ++W G  A
Sbjct: 3   STRLFQVRANSA----GATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGA 51

>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 7e-04
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
             F+L      ++W G  A    K+  + L   +
Sbjct: 33  DAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVL 66

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 3e-08
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
           E L++ NN L +L      L+    L   +N +    +P      ++L  L + +N +++
Sbjct: 287 EELNVSNNKLIELPALPPRLE---RLIASFNHLAE--VP---ELPQNLKQLHVEYNPLRE 338

Query: 84  IPDALEN 90
            PD  E+
Sbjct: 339 FPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 5e-06
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 43  LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90
              L  LN+  NK+    +P     LE    L  S N++ ++P+  +N
Sbjct: 283 PPSLEELNVSNNKL--IELPALPPRLE---RLIASFNHLAEVPELPQN 325

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALENAKRTK 95
             L L    +  S +P    HLE   +L  S N++ ++P+  ++ K   
Sbjct: 40 AHELELNNLGL--SSLPELPPHLE---SLVASCNSLTELPELPQSLKSLL 84

>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            RL++V           +    VPV  ES +    F+LD G  +  W G  +
Sbjct: 3   QRLFQVKGRRV------VRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNS 48

>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 240 FVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI 273
             F+LD G  +  W G  +    + K   +++ I
Sbjct: 30  DCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-07
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 24  EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
             L + + ++       L   L     LR L+L  N + ++GI   +  +      L  L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 75  DLSHNNI-KQIPDALENAKRTKATLD 99
            L      +++ D L+  ++ K +L 
Sbjct: 432 VLYDIYWSEEMEDRLQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 24 EHLSIVNNNL--EKLFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDLSH 78
          + L I    L   +    L  LQ  + + L    +  +    I   L     L  L+L  
Sbjct: 5  QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 79 NNI-----KQIPDALENAKRTKATLD 99
          N +       +   L+        L 
Sbjct: 65 NELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 44  QCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDLSHNNI-----KQIPDALENAKRTK 95
             LR L L    + +S    +   L     L  LDLS+N +      Q+ +++       
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 96  ATLD 99
             L 
Sbjct: 429 EQLV 432

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 46 LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI-----KQIPDALEN 90
          +++L+++  ++ ++     L  L+    + L    +     K I  AL  
Sbjct: 4  IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRV 53

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.002
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 24 EHLSIVNNNL-----EKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLED----LTTL 74
          + + + +  L     + +   L     L  LNLR N++ + G+   L  L+     +  L
Sbjct: 30 QVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 89

Query: 75 DLSHNN 80
           L +  
Sbjct: 90 SLQNCC 95

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQ 83
            +L++  NN+  +   ++ L  L+ L    NK+  S +   L +L ++  L   HN I  
Sbjct: 310 TYLTLYFNNISDI-SPVSSLTKLQRLFFANNKV--SDVS-SLANLTNINWLSAGHNQISD 365

Query: 84  IP 85
           + 
Sbjct: 366 LT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 24  EHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
           + L   NN +  +   L  L  +  L+  +N+I  S +   L +L  +T L L+  
Sbjct: 332 QRLFFANNKVSDV-SSLANLTNINWLSAGHNQI--SDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 4e-05
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 40 LTELQCLRTLNLRYNKIKN-SGIPVDLFHLEDLTTLDLSHNNIKQIP 85
           T+L  + TL      IK+  G+     +L +LT ++ S+N +  I 
Sbjct: 40 QTDLDQVTTLQADRLGIKSIDGVE----YLNNLTQINFSNNQLTDIT 82

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 43  LQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP 85
           L+ L  L L +N I  S I   +  L  L  L  ++N +  + 
Sbjct: 306 LKNLTYLTLYFNNI--SDIS-PVSSLTKLQRLFFANNKVSDVS 345

>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 160 VYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKA 214
            +  RL+     + +     +   P  ++ E L    V LLD   ++F+W G  +
Sbjct: 9   AHPPRLFACSNKIGRFVIEEV---PGELMQEDLATDDVMLLDTWDQVFVWVGKDS 60

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 39 ELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
          + T     R L+LR  KI    I      L+    +D S N I+++  
Sbjct: 13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDG 58

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 26 LSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDLSHNNIK 82
           +I   + + +F  L E   ++ + L  N I       +  ++   +DL   + S     
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 83 QIPD 86
          ++ D
Sbjct: 73 RVKD 76

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 46  LRTLNLRYNKIKNSG---IPVDLFH-LEDLTTLDLSHNNIKQIPDALE 89
           L+TL L+YN+I+      +   +   + DL  L+L+ N   +  D ++
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 30  NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN 79
           NN  E   G L  L+ L TL L+ N +    IP   F    L    L  N
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGN 205

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 22/85 (25%)

Query: 24  EHLSIVNNNLEKLFGELTELQCL----------------------RTLNLRYNKIKNSGI 61
            HL + +N L  L   L  L+CL                      + L L  N+++ S  
Sbjct: 23  THLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAA 82

Query: 62  PVDLFHLEDLTTLDLSHNNIKQIPD 86
              L     L  L+L  N++ Q   
Sbjct: 83  IQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 47 RTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN 90
          R L+L +  +    +   L  L  +T LDLSHN ++ +P AL  
Sbjct: 1  RVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLRALPPALAA 41

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 23 TEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNI 81
          T  L + NN + ++  G+   L+ L TL L  NKI     P     L  L  L LS N +
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL 91

Query: 82 KQIPDAL 88
          K++P+ +
Sbjct: 92 KELPEKM 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 30  NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-------HLEDLTTLDLSHNNIK 82
           NN L K+ G L + + ++ + L  N I  S I  + F            + + L  N ++
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNI--SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

Query: 83  QIP 85
              
Sbjct: 286 YWE 288

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 30  NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNN 80
           N     L   LT+L+ L +LN+ +N +   G      +L+       ++N 
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNL--CGEIPQGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 50  NLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPD 86
           +LR N+I  + +P  L  L+ L +L++S NN+  +IP 
Sbjct: 250 DLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 5/50 (10%)

Query: 37  FGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIP 85
                       L++   +I    +P     +L+ L        N+K++P
Sbjct: 194 NDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLRARST--YNLKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 5/44 (11%)

Query: 44 QC-LRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD 86
           C  R    + +K+    IP DL    +   L      ++ I  
Sbjct: 7  HCSNRVFLCQESKVTE--IPSDLP--RNAIELRFVLTKLRVIQK 46

>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Length = 121

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 157 EDT--VYTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDA--GLKLFIWNGP 212
           ED       +LY+V         S +  +  P    +L     F+LD     K+F+W G 
Sbjct: 1   EDAANRKLAKLYKVSNGAGPMVVSLVA-DENPFAQGALRSEDCFILDHGKDGKIFVWKGK 59

Query: 213 KA 214
           +A
Sbjct: 60  QA 61

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 30  NNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH 78
           +N +  +   L  L  L  ++L+ N+I  S +   L +  +L  + L++
Sbjct: 182 DNKISDIS-PLASLPNLIEVHLKNNQI--SDVS-PLANTSNLFIVTLTN 226

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 18  VTIGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKI-KNSGIPVDLFHLEDLTTLDL 76
           V   +   L+  ++    L      +  L +LNL  N++ +   +   +    +L  L+L
Sbjct: 39  VAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 98

Query: 77  SHNNIKQIPD 86
           S N +K   +
Sbjct: 99  SGNELKSERE 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	273
d2fh1a2	96	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1j72a2	116	Macrophage capping protein Cap G {Human (Homo sapi	99.68
d1svya_	102	Severin, domain 2 {Dictyostelium discoideum [TaxId	99.67
d1kcqa_	104	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2fh1a3	113	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1j72a3	107	Macrophage capping protein Cap G {Human (Homo sapi	99.41
d1d0na3	121	Gelsolin {Horse (Equus caballus) [TaxId: 9796]}	99.4
d2vika_	126	Villin, domain 1 (res. 1-126) {Chicken (Gallus gal	99.22
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.21
d1j72a1	114	Macrophage capping protein Cap G {Human (Homo sapi	99.21
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.13
d3cipg1	124	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.11
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.02
d2fh1a3	113	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.95
d2fh1a2	96	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.9
d1svya_	102	Severin, domain 2 {Dictyostelium discoideum [TaxId	98.9
d2fh1a1	121	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.85
d1kcqa_	104	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.81
d1j72a2	116	Macrophage capping protein Cap G {Human (Homo sapi	98.76
d1d0na3	121	Gelsolin {Horse (Equus caballus) [TaxId: 9796]}	98.66
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.64
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.62
d1j72a3	107	Macrophage capping protein Cap G {Human (Homo sapi	98.61
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.47
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.44
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.42
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.3
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.82
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.58
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.34
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.14
d1pd0a4	173	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	96.09
d1pd0a4	173	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	95.93
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.89
d2fh1a1	121	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	95.59
d3cipg1	124	Gelsolin {Human (Homo sapiens) [TaxId: 9606]}	95.06
d1j72a1	114	Macrophage capping protein Cap G {Human (Homo sapi	95.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.95
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.85
d2vika_	126	Villin, domain 1 (res. 1-126) {Chicken (Gallus gal	91.72

>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.9e-18  Score=116.58  Aligned_cols=61  Identities=23%  Similarity=0.284  Sum_probs=56.0

Q ss_pred             eeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhh
Q psy8923         162 TTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGL  226 (273)
Q Consensus       162 ~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~  226 (273)
                      .+|||||+|+    ...++++.||++++++||++||||||+++.+|+|.|++|+..||..|...|
T Consensus         3 ~~RLf~v~g~----~~~~~~~~EV~~~~ssLns~d~fILd~~~~iyvW~G~~s~~~er~~a~~~a   63 (96)
T d2fh1a2           3 STRLFQVRAN----SAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELL   63 (96)
T ss_dssp             SSEEEEEEEC----TTCCEEEEEECCSGGGCBTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHH
T ss_pred             CcEEEEEECC----CCCeEEEEEeCCCHHHhCCCCeEEEECCCEEEEEECCCCCHHHHHHHHHHH
Confidence            4799999998    456788999999999999999999999999999999999999999988765

>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1e-16  Score=115.06  Aligned_cols=89  Identities=19%  Similarity=0.216  Sum_probs=73.6

Q ss_pred             eecccCc-ceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhcccccc
Q psy8923         154 FTVEDTV-YTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWN  232 (273)
Q Consensus       154 ~~~~~~~-~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~  232 (273)
                      .|+.+.. ..+|||||+|+      ..+++.+||+++++|+++||||||+++.+|+|.|++|+..||..|...|... .+
T Consensus         2 ~hv~~~~~~~~rL~~v~G~------~~~~~~eV~~~~~sL~s~dvfILd~~~~iyvW~G~~ss~~ek~~a~~~a~~~-~~   74 (116)
T d1j72a2           2 KHVVPNEVVVQRLYQVKGK------KNIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAI-RD   74 (116)
T ss_dssp             CCCCCCCCEEEEEEEEECS------SSCEEEEECSSGGGCBTTSEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHH-HT
T ss_pred             cccCCCCCCCcEEEEEECC------CceEEEEeCCCHHHcCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHH-Hh
Confidence            4555444 45799999998      6789999999999999999999999999999999999999999998877543 34


Q ss_pred             CCCCCCceEEEEeCCce
Q psy8923         233 GPKAKNTFVFLLDAGLK  249 (273)
Q Consensus       233 ~~~~~~~~v~~ld~~~~  249 (273)
                      .++.....|.+++.|.|
T Consensus        75 ~~~~~~~~v~~v~eG~E   91 (116)
T d1j72a2          75 SERQGKAQVEIVTDGEE   91 (116)
T ss_dssp             TSCCSSCEEEEEETTCC
T ss_pred             ccCCCCCcEEEEECCCC
Confidence            44555567888887754

>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Severin, domain 2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.67  E-value=7.2e-17  Score=113.45  Aligned_cols=61  Identities=28%  Similarity=0.445  Sum_probs=57.3

Q ss_pred             ceeeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhc
Q psy8923         161 YTTRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLK  227 (273)
Q Consensus       161 ~~~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~  227 (273)
                      +.||||+|+|+      +++.+.|||+++++|+++||||||+++.+|+|.|++|+..||..|...|.
T Consensus         2 ~~pRL~~v~G~------~~~~~~ev~~~~~~L~s~dvfILd~~~~iyvW~G~~s~~~er~~a~~~A~   62 (102)
T d1svya_           2 YKPRLLHISGD------KNAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVAR   62 (102)
T ss_dssp             CSCEEEEEECT------TSCEEEEECSSGGGCBTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECC------CceEEEEecCCHHHcCCCCeEEEEcCCEEEEEECCCCCHHHHHHHHHHHH
Confidence            56899999998      78899999999999999999999999999999999999999999988773

>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.3e-16  Score=110.98  Aligned_cols=81  Identities=22%  Similarity=0.314  Sum_probs=69.7

Q ss_pred             eeEEEEecCcccCCCCceEEEEecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceEE
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVF  242 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v~  242 (273)
                      .|||+|+|+      ..+++.+||+++++|+++||||||+++.+|+|.|++|+..||..|...|.. +.+.++.....|.
T Consensus         3 ~RLy~v~G~------~~i~~~eV~~~~~~L~s~dvfILd~~~~iyvW~G~~s~~~ek~~a~~~a~~-l~~~~~~~~~~i~   75 (104)
T d1kcqa_           3 QRLFQVKGR------RVVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG-IRDNERSGRARVH   75 (104)
T ss_dssp             CEEEEEEES------SSEEEEEECSSGGGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH-HHHHTSTTCSEEE
T ss_pred             eEEEEEECC------CcEEEEEeCCCHHHcCCCCeEEEEcCCeEEEEECCcCCHHHHHHHHHHHHH-HHhcCCCCCceEE
Confidence            589999998      789999999999999999999999999999999999999999999888843 4444444556788


Q ss_pred             EEeCCceE
Q psy8923         243 LLDAGLKL  250 (273)
Q Consensus       243 ~ld~~~~~  250 (273)
                      +++.|.|.
T Consensus        76 ~v~eG~E~   83 (104)
T d1kcqa_          76 VSEEGTEP   83 (104)
T ss_dssp             EEETTCCC
T ss_pred             EEeCCCCh
Confidence            88888653

>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-14  Score=103.82  Aligned_cols=87  Identities=20%  Similarity=0.296  Sum_probs=67.9

Q ss_pred             CcceeeEEEEecCcccCCCCceEEEEe--cCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccC--C
Q psy8923         159 TVYTTRLYRVHAPLHQAQASSIHLEPV--PVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNG--P  234 (273)
Q Consensus       159 ~~~~~~L~~v~g~~~~~~~~~~~~~ev--~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~--~  234 (273)
                      ..+.||||+|++.     .+...+.+|  |++.++|+++||||||++..+|||+|++|+..|+..|..+|..++-..  .
T Consensus         8 ~~~~prLf~~~~~-----~g~~~~~ev~~~~~q~dL~s~dvfILD~g~~ifvW~G~~a~~~er~~a~~~A~~~~~~~~~~   82 (113)
T d2fh1a3           8 DAHPPRLFACSNK-----IGRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN   82 (113)
T ss_dssp             --CCCEEEEEECT-----TSSCEEEEECSSCCGGGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHHHHTC---
T ss_pred             cCCCCEEEEEEcC-----CCCEEEEEEccCCCHHHCCCCceEEEECCCEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence            3456899999986     355667766  689999999999999999999999999999999999999887665432  3


Q ss_pred             CCCCceEEEEeCCceE
Q psy8923         235 KAKNTFVFLLDAGLKL  250 (273)
Q Consensus       235 ~~~~~~v~~ld~~~~~  250 (273)
                      +.....|.+++.|.|-
T Consensus        83 r~~~~~i~~v~eG~Ep   98 (113)
T d2fh1a3          83 RDRRTPITVVKQGFEP   98 (113)
T ss_dssp             ----CCEEEEETTCCC
T ss_pred             CCCCCcEEEEeCCCCC
Confidence            4445679999988764

>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.3e-13  Score=94.60  Aligned_cols=85  Identities=31%  Similarity=0.340  Sum_probs=69.6

Q ss_pred             ceeeEEEEecCcccCCCCceEEEEe----cCCCCCCCCCCEEEEECC--CeEEEEeCCCCCHHHHHHhhhhhccccccCC
Q psy8923         161 YTTRLYRVHAPLHQAQASSIHLEPV----PVLSESLDPRFVFLLDAG--LKLFIWNGPKAKNTFVFLLDAGLKLFIWNGP  234 (273)
Q Consensus       161 ~~~~L~~v~g~~~~~~~~~~~~~ev----~~~~ssL~s~dvfild~~--~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~  234 (273)
                      ..++||||++.     .+...+.+|    |++.++|+++||||||++  ..+|+|.|++|+..||..|...|..++-..+
T Consensus         6 ~~~~Ly~vs~~-----~G~~~~~~v~~~~p~~~~~L~s~dvfILD~~~~~~iyvW~G~~s~~~ek~~a~~~A~~~~~~~~   80 (107)
T d1j72a3           6 QAAALYKVSDA-----TGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQ   80 (107)
T ss_dssp             CCCEEEEEECT-----TSSCEEEEEECSSSBCGGGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECC-----CCCEEEEEEecCCccCHHHCCCCCEEEEeccCCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcC
Confidence            35799999875     466777776    689999999999999986  4599999999999999999988866654445


Q ss_pred             CCCCceEEEEeCCceE
Q psy8923         235 KAKNTFVFLLDAGLKL  250 (273)
Q Consensus       235 ~~~~~~v~~ld~~~~~  250 (273)
                      ++....|.+++.|.|.
T Consensus        81 ~~~~~~v~~v~eG~Ep   96 (107)
T d1j72a3          81 YAPNTQVEILPQGRES   96 (107)
T ss_dssp             CCTTCEEEEEETTCCC
T ss_pred             CCCCCcEEEEeCCCCC
Confidence            5566789999998764

>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.40  E-value=3.6e-13  Score=97.02  Aligned_cols=84  Identities=27%  Similarity=0.339  Sum_probs=69.1

Q ss_pred             eeeEEEEecCcccCCCCceEEEEe----cCCCCCCCCCCEEEEECCC--eEEEEeCCCCCHHHHHHhhhhhccccccCCC
Q psy8923         162 TTRLYRVHAPLHQAQASSIHLEPV----PVLSESLDPRFVFLLDAGL--KLFIWNGPKAKNTFVFLLDAGLKLFIWNGPK  235 (273)
Q Consensus       162 ~~~L~~v~g~~~~~~~~~~~~~ev----~~~~ssL~s~dvfild~~~--~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~  235 (273)
                      .+|||+|++.     .+...+.+|    |++.++|+++||||||++.  .+|+|.|++|+..||..|...|..++-+..+
T Consensus         8 ~~rLy~vs~~-----~G~~~~~~v~~~~p~~~s~L~s~dvfILD~~~e~~IyvW~G~~ss~~ek~~A~~~A~~~~~~~~~   82 (121)
T d1d0na3           8 LAKLYKVSNG-----AGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDY   82 (121)
T ss_dssp             CCEEEEEECS-----SSSCEEEEEESSSSBCGGGCCTTSEEEEEEGGGTEEEEEECTTSCHHHHTTHHHHHHHHHHHTTC
T ss_pred             CCEEEEEECC-----CCCEEEEEEccCCCcCHHHCCCCCEEEEeeCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            4699999865     466777776    7999999999999999864  5999999999999999998888666555555


Q ss_pred             CCCceEEEEeCCceE
Q psy8923         236 AKNTFVFLLDAGLKL  250 (273)
Q Consensus       236 ~~~~~v~~ld~~~~~  250 (273)
                      .....|.+++.|.|.
T Consensus        83 ~~~~~v~~v~eG~Ep   97 (121)
T d1d0na3          83 PKQTQVSVLPEGGET   97 (121)
T ss_dssp             CTTCEEEEEETTCCC
T ss_pred             CCCCeEEEEcCCCCC
Confidence            566778888888764

>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Villin, domain 1 (res. 1-126)
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.22  E-value=9.1e-13  Score=94.77  Aligned_cols=109  Identities=22%  Similarity=0.347  Sum_probs=83.8

Q ss_pred             CccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecccCCCC-Cccchhhhhhhcccccchhccccccccchhhhhhhhh
Q psy8923          43 LQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLSHNNIK-QIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAEC  119 (273)
Q Consensus        43 l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls~N~l~-~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~  119 (273)
                      ++.|+...+.+.++..  +|+.-. .+ ..=.++-+..-.-. .....+|.|+|.+++.++.+.+++.+.+|++.+++.+
T Consensus        15 ~~gl~VWrIe~~~~~~--vp~~~~G~Fysgd~Yivl~ty~~~~~~~~~iy~W~G~~ss~~e~~~aa~~a~eLd~~l~g~~   92 (126)
T d2vika_          15 TPGIQIWRIENMEMVP--VPTKSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVA   92 (126)
T ss_dssp             CCEEEEEECGGGSCCE--ECTTTTTCCCSSSCEEEEEEEECSSSEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTSCS
T ss_pred             CCCEEEEEEeCCEEEE--CChHHcCEEeCCCEEEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            3567777777766665  665422 22 22233333311112 4455799999999999999999999999999999999


Q ss_pred             hhcccccCCCchhhHhhccCCcEEecCCcccccce
Q psy8923         120 RTIREEQGDESEEFLSLFNTGISYIEGGRTASGFF  154 (273)
Q Consensus       120 ~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~~  154 (273)
                      +|+|+.||+||++|+++|++++++++|| ..+||+
T Consensus        93 vq~R~~Qg~Ep~~Fl~lF~g~lii~~GG-~~sgfk  126 (126)
T d2vika_          93 VQHREVQGHESETFRAYFKQGLIYKQGG-VASGMK  126 (126)
T ss_dssp             CEEEEETTTSHHHHHHHCSSCCCCCCSC-TTCSCC
T ss_pred             EEEEEEcCcCCHHHHHHcCCCeEEeeCc-ccccCC
Confidence            9999999999999999999999999999 778764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1.2e-11  Score=89.51  Aligned_cols=63  Identities=30%  Similarity=0.436  Sum_probs=56.1

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .+|++|++++|.|+.+|+.|+.+++|+.|++++|+|+.  +| .+..+++|+.|++++|+++.+|.
T Consensus        20 ~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L~l~~N~i~~~~~   82 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAA   82 (124)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSST
T ss_pred             CCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cC-ccccccccCeEECCCCccCCCCC
Confidence            45688999999999999889999999999999999998  76 58899999999999999998875

>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7.6e-13  Score=93.31  Aligned_cols=107  Identities=25%  Similarity=0.311  Sum_probs=81.0

Q ss_pred             cCCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecccCCCCCccchhhhhhhcccccchhccccccccchhhhhhhh
Q psy8923          41 TELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLSHNNIKQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAAE  118 (273)
Q Consensus        41 ~~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls~N~l~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~  118 (273)
                      ++-+.|+...+.+..+..  +|+... .+ ..=.++-+...  ......+|.|+|.+++.++.+.+++.+.+|++.+++.
T Consensus         6 g~~~Gl~VWrIe~~~~~~--v~~~~~G~Fy~gd~Yivl~~y--~~~~~~i~fW~G~~ss~de~g~aa~~~veLd~~l~g~   81 (114)
T d1j72a1           6 VQDPGLHVWRVEKLKPVP--VAQENQGVFFSGDSYLVLHNG--PEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGR   81 (114)
T ss_dssp             TSSSEEEEEEECSSSEEE--CCTTTTTEEETTSEEEEEEEC--SSSCEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCcCCeEEEEEcCCEEEE--CChHHcCeeeCCCEEEEEEec--CCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            445567777777777776  775432 11 11122222211  1223468999999999999999999999999999999


Q ss_pred             hhhcccccCCCchhhHhhccCCcEEecCCccccc
Q psy8923         119 CRTIREEQGDESEEFLSLFNTGISYIEGGRTASG  152 (273)
Q Consensus       119 ~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~  152 (273)
                      ++|+|+.||+||.+|+++|++++++++|+ ..+|
T Consensus        82 ~vq~R~~Qg~E~~~Fl~lF~~~~ii~~GG-~~sg  114 (114)
T d1j72a1          82 PVQHREVQGNESDLFMSYFPRGLKYQEGG-VESG  114 (114)
T ss_dssp             SEEEEEETTSCCHHHHTTCSSCCEEECSS-CCTT
T ss_pred             ccEEEEECCCCCHHHHHHhCCCeEEeecc-cCCC
Confidence            99999999999999999999999999999 6553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=3e-11  Score=93.96  Aligned_cols=62  Identities=27%  Similarity=0.359  Sum_probs=29.1

Q ss_pred             cEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccch
Q psy8923          24 EHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        24 ~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      ++|+|++|.|+.++ ..|..+++|+.|+|++|+|+.  +|+. |.++++|+.|+|++|+|+.||..
T Consensus        57 ~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~--l~~~~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE--ISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE--ECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             eeeeccccccccccccccccccccceeeeccccccc--cCHHHHhCCCcccccccCCccccccCHH
Confidence            44455555444433 444444555555555555544  3332 22445555555555555544443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.9e-11  Score=90.22  Aligned_cols=70  Identities=23%  Similarity=0.266  Sum_probs=60.3

Q ss_pred             CCccEEEccCC-CCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCccchhhhhh
Q psy8923          21 GLTEHLSIVNN-NLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQIPDALENAK   92 (273)
Q Consensus        21 ~~l~~L~l~~N-~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~ip~~l~~w~   92 (273)
                      ++|+.|++++| .|+.|+ ..|.++++|+.|+|++|+|+.  |++. |..+++|+.|+|++|+|+.+|..++...
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~--i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~  103 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL  103 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--ECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCC--cccccccccccccceeccCCCCcccChhhhccc
Confidence            35577999876 599997 789999999999999999998  7554 6699999999999999999999877543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=5.2e-11  Score=92.58  Aligned_cols=80  Identities=23%  Similarity=0.282  Sum_probs=65.1

Q ss_pred             cCCCCCceecC---CCccEEEccCCCCCC-ch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCc
Q psy8923          10 CMASKSESVTI---GLTEHLSIVNNNLEK-LF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQI   84 (273)
Q Consensus        10 ~~~~~l~~~~l---~~l~~L~l~~N~l~~-lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~i   84 (273)
                      |...+|..+|-   .++++|+|++|+|++ ++ ..|.++++|+.|+|++|+++. ..+..+..+++|+.|+|++|+|+.+
T Consensus        15 Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~-~~~~~~~~~~~L~~L~Ls~N~l~~l   93 (192)
T d1w8aa_          15 CTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKIKEI   93 (192)
T ss_dssp             CTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred             EeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccc-ccccccccccccceeeecccccccc
Confidence            33444555542   478999999999987 54 778999999999999999997 4455666899999999999999999


Q ss_pred             cchhhh
Q psy8923          85 PDALEN   90 (273)
Q Consensus        85 p~~l~~   90 (273)
                      |...+.
T Consensus        94 ~~~~F~   99 (192)
T d1w8aa_          94 SNKMFL   99 (192)
T ss_dssp             CSSSST
T ss_pred             CHHHHh
Confidence            886554

>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.9e-12  Score=90.64  Aligned_cols=109  Identities=26%  Similarity=0.412  Sum_probs=83.5

Q ss_pred             CCccCCEeeccCCcCccCCCCcccc-CC-CCCCEEecccCCC--CCccchhhhhhhcccccchhccccccccchhhhhhh
Q psy8923          42 ELQCLRTLNLRYNKIKNSGIPVDLF-HL-EDLTTLDLSHNNI--KQIPDALENAKRTKATLDKRACSAIHAVNLRNFLAA  117 (273)
Q Consensus        42 ~l~~L~~L~l~~N~l~~~~ip~~~~-~l-~~L~~L~Ls~N~l--~~ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~  117 (273)
                      +=+.|+...+.+..+..  +|+... .+ ..=.++-+..-+.  ......+|.|+|.+++.++..++++.+.+|++.+++
T Consensus        12 ~~~Gl~VWrIe~~~~~~--vp~~~~G~Fy~gd~YIil~ty~~~~g~~~~~iy~W~G~~ss~~e~~~aa~~aveLd~~l~g   89 (124)
T d3cipg1          12 KEPGLQIWRVEKFDLVP--VPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNG   89 (124)
T ss_dssp             SSSEEEEEEEETTEEEE--CCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCceEEEEEeCCEEEE--CCHHHccEEeCCCEEEEEEEEEcCCCCEeEEEEEEECCCCChhHHHHHHHHHHHHHHHcCC
Confidence            34557777777777776  776432 11 1222332221111  145567999999999999999999999999999999


Q ss_pred             hhhhcccccCCCchhhHhhccCCcEEecCCcccccc
Q psy8923         118 ECRTIREEQGDESEEFLSLFNTGISYIEGGRTASGF  153 (273)
Q Consensus       118 ~~~~~~~~qg~e~~~fl~lf~~~i~~l~g~~~~s~~  153 (273)
                      .++|+|+.||+||++|+++|++++++++|+ ..+||
T Consensus        90 ~~vq~R~~Qg~Ep~~Fl~lF~~~~ii~~GG-~~sgf  124 (124)
T d3cipg1          90 RAVQHREVQGFESATFLGYFKSGLKYKKGG-VASGF  124 (124)
T ss_dssp             CEEEEEEETTCCCHHHHTTCTTCCEEESCC-CCCCC
T ss_pred             CccEEEEecCCCCHHHHHHhCCCeEEeeCC-cccCC
Confidence            999999999999999999999999999999 77765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=9e-11  Score=84.70  Aligned_cols=62  Identities=27%  Similarity=0.304  Sum_probs=54.7

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCC--ccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIP--VDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip--~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|+.|++++|.|+.+|+ ++.+++|+.|++++|+|+.  +|  ..+..+++|+.|++++|+++.++.
T Consensus        44 ~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~~--~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          44 CLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQ--SAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCCS--SSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             cccccccccccccccCc-cccccccCeEECCCCccCC--CCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            44779999999999975 8999999999999999998  76  367799999999999999986654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.6e-10  Score=86.11  Aligned_cols=66  Identities=18%  Similarity=0.260  Sum_probs=57.1

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      .++.|+|++|+|+.||..+..+++|+.|+|++|+|+.  ++ .+..+++|+.|+|++|+++.+|..++.
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccccCCCccccc
Confidence            4577999999999998777889999999999999998  75 578899999999999999988876554

>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.8e-10  Score=81.39  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=36.0

Q ss_pred             CCCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923         234 PKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       234 ~~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                      .+..+++|||||++.+||||+|++|+..||..|+.+|++
T Consensus        36 ~dL~s~dvfILD~g~~ifvW~G~~a~~~er~~a~~~A~~   74 (113)
T d2fh1a3          36 EDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKR   74 (113)
T ss_dssp             GGSCTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHCCCCceEEEECCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456778999999999999999999999999999999975

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=5e-10  Score=84.02  Aligned_cols=60  Identities=25%  Similarity=0.296  Sum_probs=55.6

Q ss_pred             CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      ++|+.|+|++|+|+.|+ ..|..+++|++|+|++|+|+.  +|..++...+|+.|+|++|++.
T Consensus        56 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~--l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          56 GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES--LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC--CCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccCcceeeccccCCcccccccccccccceeccCCCCcc--cChhhhccccccccccCCCccc
Confidence            37889999999999996 779999999999999999998  9999887778999999999986

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.95  E-value=2.7e-10  Score=94.99  Aligned_cols=64  Identities=31%  Similarity=0.464  Sum_probs=59.6

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Cccc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip~   86 (273)
                      +++.|++++|.+++.++.++.+++|+.|+|++|+|++ .+|+.+.++++|+.|+|++|+|+ .||+
T Consensus       222 ~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g-~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccccccccccccccccccCccCeecc-cCChHHhCCCCCCEEECcCCcccccCCC
Confidence            5677999999999988889999999999999999995 79999999999999999999999 8986

>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.6e-10  Score=77.36  Aligned_cols=40  Identities=18%  Similarity=0.301  Sum_probs=36.2

Q ss_pred             CCCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         234 PKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       234 ~~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                      ...++++|||||++..||||+|++|++.||+.|.++|+++
T Consensus        27 ssLns~d~fILd~~~~iyvW~G~~s~~~er~~a~~~a~~~   66 (96)
T d2fh1a2          27 GALNSNDAFVLKTPSAAYLWVGTGASEAEKTGAQELLRVL   66 (96)
T ss_dssp             GGCBTTSEEEEECSSCEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred             HHhCCCCeEEEECCCEEEEEECCCCCHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999999999999764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.7e-10  Score=85.29  Aligned_cols=64  Identities=30%  Similarity=0.376  Sum_probs=57.0

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCcccc-CCCCCCEEecccCCCCCccc
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLF-HLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~-~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +++|++|+|++|.|+.++ .|..+++|++|++++|+++.  +|+.++ .+++|+.|+|++|+++.++.
T Consensus        40 l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~--l~~~~~~~l~~L~~L~L~~N~i~~~~~  104 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLVELGD  104 (162)
T ss_dssp             TTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             cccCCEEECCCCCCCccC-CcccCcchhhhhcccccccC--CCccccccccccccceecccccccccc
Confidence            346788999999999995 48899999999999999998  888765 79999999999999998875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.91  E-value=3e-10  Score=94.76  Aligned_cols=56  Identities=30%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             EEccC-CCCCC-chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC
Q psy8923          26 LSIVN-NNLEK-LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        26 L~l~~-N~l~~-lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      |+|++ |.+++ ||++|++|++|++|+|++|++++ ..|..+..+++|+.+++++|++.
T Consensus        81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L~~l~l~~N~~~  138 (313)
T d1ogqa_          81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccchhhhccccccc-cccccccchhhhccccccccccc
Confidence            44443 44442 44444444444444444444443 22222333444444444444333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-09  Score=88.15  Aligned_cols=85  Identities=28%  Similarity=0.330  Sum_probs=68.3

Q ss_pred             CCccccCCCCCceecC----------------CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-cc
Q psy8923           5 EPGTFCMASKSESVTI----------------GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LF   66 (273)
Q Consensus         5 ~p~~~~~~~~l~~~~l----------------~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~   66 (273)
                      +|..+..++.|+.+.+                .+++.|++++|.++.+| ..+..+++|+.|++++|+|+.  +|.. +.
T Consensus        92 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~--~~~~~~~  169 (266)
T d1p9ag_          92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE--LPAGLLN  169 (266)
T ss_dssp             CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC--CCTTTTT
T ss_pred             cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc--cCccccc
Confidence            4556666666666533                37788999999999987 667889999999999999997  6654 56


Q ss_pred             CCCCCCEEecccCCCCCccchhhhh
Q psy8923          67 HLEDLTTLDLSHNNIKQIPDALENA   91 (273)
Q Consensus        67 ~l~~L~~L~Ls~N~l~~ip~~l~~w   91 (273)
                      .+++|++|+|++|+|+.||..++..
T Consensus       170 ~l~~L~~L~Ls~N~L~~lp~~~~~~  194 (266)
T d1p9ag_         170 GLENLDTLLLQENSLYTIPKGFFGS  194 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccccceeecccCCCcccChhHCCC
Confidence            8999999999999999999887753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=8.1e-10  Score=91.65  Aligned_cols=67  Identities=25%  Similarity=0.282  Sum_probs=52.3

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      .+++|++++|.|++++ ..|.++++|+.|+|++|+|+.  +|.++.++++|++|+|++|+|+.|+...+.
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             cccccccccccccccccccccccccceeeecccccccc--cccccccccCCCEEECCCCccCccChhhcc
Confidence            4466888888888874 667788888888888888887  888888888888888888888888765443

>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Severin, domain 2
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.90  E-value=5.1e-10  Score=77.67  Aligned_cols=39  Identities=33%  Similarity=0.487  Sum_probs=35.7

Q ss_pred             CCCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923         234 PKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       234 ~~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                      ...++++|||||++++||||+|++|+..||+.|..+|+.
T Consensus        25 ~~L~s~dvfILd~~~~iyvW~G~~s~~~er~~a~~~A~~   63 (102)
T d1svya_          25 SSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARA   63 (102)
T ss_dssp             GGCBTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCCeEEEEcCCEEEEEECCCCCHHHHHHHHHHHHH
Confidence            445678999999999999999999999999999999975

>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.4e-10  Score=82.66  Aligned_cols=68  Identities=26%  Similarity=0.301  Sum_probs=60.5

Q ss_pred             ccchhhhhhhcccccchhccccccccchhhhhhhhhhhcccccCCCchhhHhhccCC-cEEecCCcccc
Q psy8923          84 IPDALENAKRTKATLDKRACSAIHAVNLRNFLAAECRTIREEQGDESEEFLSLFNTG-ISYIEGGRTAS  151 (273)
Q Consensus        84 ip~~l~~w~g~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~qg~e~~~fl~lf~~~-i~~l~g~~~~s  151 (273)
                      ....+|.|+|.+++.++.+.+++.+.+|++.+++.++|+|+.||+||++|+++|+++ +++++|+...+
T Consensus        48 ~~~~iy~W~G~~ss~~e~~~aa~~a~eld~~l~g~~vq~R~~QG~Ep~~Fl~~F~g~~~Ii~~Gg~~~~  116 (121)
T d2fh1a1          48 QGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSRE  116 (121)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTSCSEEEEEETTCCCHHHHGGGTTCCEEEESCCCCTT
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEeccCCCCCHHHHHHhCCCeEEEECCCcccc
Confidence            345799999999999999999999999999999999999999999999999999987 67778873333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6.3e-09  Score=85.36  Aligned_cols=79  Identities=24%  Similarity=0.365  Sum_probs=45.5

Q ss_pred             CCCccccCCCCCceecCC----------------CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-c
Q psy8923           4 FEPGTFCMASKSESVTIG----------------LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-L   65 (273)
Q Consensus         4 ~~p~~~~~~~~l~~~~l~----------------~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~   65 (273)
                      ..|..|+++++|+.+.+.                +|+.+++++|+|+.+| ..|..+++|+.|++++|+|+.  +|.. +
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~--l~~~~f  173 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAF  173 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--ECTTTT
T ss_pred             ccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc--cchhhh
Confidence            346667777777664322                5556666666666654 445556666666666666665  4333 3


Q ss_pred             cCCCCCCEEecccCCCCCc
Q psy8923          66 FHLEDLTTLDLSHNNIKQI   84 (273)
Q Consensus        66 ~~l~~L~~L~Ls~N~l~~i   84 (273)
                      .++++|+.+++++|+++.+
T Consensus       174 ~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEE
T ss_pred             ccccccchhhhhhcccccc
Confidence            3556666666666666644

>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.2e-09  Score=75.94  Aligned_cols=40  Identities=23%  Similarity=0.376  Sum_probs=35.9

Q ss_pred             CCCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         234 PKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       234 ~~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                      ...++.+|||||++.+||||+|++|+..||..|..+|+++
T Consensus        24 ~~L~s~dvfILd~~~~iyvW~G~~s~~~ek~~a~~~a~~l   63 (104)
T d1kcqa_          24 ESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI   63 (104)
T ss_dssp             GGCCTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCCeEEEEcCCeEEEEECCcCCHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.84  E-value=2.9e-09  Score=88.23  Aligned_cols=69  Identities=32%  Similarity=0.424  Sum_probs=61.0

Q ss_pred             CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhhh
Q psy8923          21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALEN   90 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~~   90 (273)
                      +++++|+|++|+|+.|| .+|.++++|++|++++|.++. ..|..+.++++|+.|++++|+++.+|..+..
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~-i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~  100 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKELPEKMPK  100 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCSBCCSSCCT
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccc-cchhhhhCCCccCEecccCCccCcCccchhh
Confidence            57899999999999998 579999999999999999998 3355677999999999999999999976543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3.3e-09  Score=86.33  Aligned_cols=70  Identities=31%  Similarity=0.244  Sum_probs=60.2

Q ss_pred             CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCC-Ccc-chhhhhh
Q psy8923          21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIK-QIP-DALENAK   92 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~-~ip-~~l~~w~   92 (273)
                      +.++.|++++|+|+.+| ..|..+++|++|+|++|+|+.  ||+.++.+++|+.|+|++|.+. .-. ..+..|+
T Consensus       148 ~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~--lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl  220 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL  220 (266)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHH
T ss_pred             ccchhcccccccccccCccccccccccceeecccCCCcc--cChhHCCCCCCCEEEecCCCCCCCcchHHHHHHH
Confidence            36788999999999987 679999999999999999998  9999999999999999999987 321 2345554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.6e-09  Score=86.22  Aligned_cols=67  Identities=25%  Similarity=0.292  Sum_probs=59.7

Q ss_pred             CccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchhh
Q psy8923          22 LTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDALE   89 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l~   89 (273)
                      .|+.|+|++|+|+.+| ..|.++++|+.+++++|+++. ..|..+.++++|+.|++++|+++.+|...+
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~  221 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEAL  221 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHH
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccc-cChhHhhhhhhccccccccccccccccccc
Confidence            5688999999999986 789999999999999999997 567888899999999999999998876544

>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.5e-09  Score=75.85  Aligned_cols=40  Identities=33%  Similarity=0.457  Sum_probs=35.7

Q ss_pred             CCCCCceEEEEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         234 PKAKNTFVFLLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       234 ~~~~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                      ...++.+|||||++.+||||+|++|+..||..|..+|+.+
T Consensus        33 ~sL~s~dvfILd~~~~iyvW~G~~ss~~ek~~a~~~a~~~   72 (116)
T d1j72a2          33 DSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAI   72 (116)
T ss_dssp             GGCBTTSEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred             HHcCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence            3456779999999999999999999999999999999753

>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Horse (Equus caballus) [TaxId: 9796]

Probab=98.66  E-value=4.7e-09  Score=74.94  Aligned_cols=39  Identities=23%  Similarity=0.440  Sum_probs=34.9

Q ss_pred             CCCCCceEEEEeCCce--EEEEeCCCcchHhHHhHHHHhhh
Q psy8923         234 PKAKNTFVFLLDAGLK--LFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       234 ~~~~~~~v~~ld~~~~--~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                      ....+++|||||++.+  ||||+|++|+..||..|..+|++
T Consensus        35 s~L~s~dvfILD~~~e~~IyvW~G~~ss~~ek~~A~~~A~~   75 (121)
T d1d0na3          35 GALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASD   75 (121)
T ss_dssp             GGCCTTSEEEEEEGGGTEEEEEECTTSCHHHHTTHHHHHHH
T ss_pred             HHCCCCCEEEEeeCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4456789999999876  99999999999999999999975

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.64  E-value=2.9e-10  Score=88.76  Aligned_cols=64  Identities=31%  Similarity=0.370  Sum_probs=52.5

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +++|++|+|++|+|+.|+ .+..|++|+.|+|++|+|+.  +|.....+++|+.|++++|+++.++.
T Consensus        47 L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~l~~  110 (198)
T d1m9la_          47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSG  110 (198)
T ss_dssp             TTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCCHHH
T ss_pred             ccccceeECcccCCCCcc-cccCCccccChhhccccccc--cccccccccccccccccccccccccc
Confidence            445677999999999886 47888999999999999987  88655566789999999999988754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.62  E-value=2.4e-08  Score=84.76  Aligned_cols=62  Identities=23%  Similarity=0.342  Sum_probs=47.5

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .+++.|++++|+|+++++ +..+++|+.|++++|+|+.  +| .+.+|++|++|+|++|+|+.+++
T Consensus       307 ~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~--l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         307 KNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD--VS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             TTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC--CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             cccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCC--Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence            366778888888887753 6778888888888888876  65 57778888888888888887664

>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.1e-08  Score=71.30  Aligned_cols=39  Identities=31%  Similarity=0.473  Sum_probs=34.4

Q ss_pred             CCCCCceEEEEeCC--ceEEEEeCCCcchHhHHhHHHHhhh
Q psy8923         234 PKAKNTFVFLLDAG--LKLFIWNGPKAKNTFKSKTRLLAEK  272 (273)
Q Consensus       234 ~~~~~~~v~~ld~~--~~~~~w~G~~a~~~~~~~~~~~~~~  272 (273)
                      +...+++|||||++  .+||||+|+.|+..||..|..+|++
T Consensus        34 ~~L~s~dvfILD~~~~~~iyvW~G~~s~~~ek~~a~~~A~~   74 (107)
T d1j72a3          34 ELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEG   74 (107)
T ss_dssp             GGCCTTSEEEEECGGGSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             HHCCCCCEEEEeccCCCEEEEEECCCCCHHHHHHHHHHHHH
Confidence            44567899999997  4699999999999999999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.61  E-value=6.1e-08  Score=75.16  Aligned_cols=60  Identities=28%  Similarity=0.403  Sum_probs=31.1

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCcc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIP   85 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip   85 (273)
                      .|+.|++++|.+..+++ +..+++|+.|++++|++..  +| .+..+++|+.|++++|+++.++
T Consensus       107 ~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~--~~-~l~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2         107 NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD--IS-ALSGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccccccc-cchhhhhHHhhhhhhhhcc--cc-cccccccccccccccccccCCc
Confidence            45555555555554432 4445555555555555554  33 3445555555555555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=4.7e-08  Score=77.31  Aligned_cols=61  Identities=33%  Similarity=0.378  Sum_probs=48.1

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|+.|++++|.++.+++ +.++++|+.|+|++|+++.  +|. +.++++|++|+|++|+++.+|.
T Consensus       152 ~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~--l~~-l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         152 NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG
T ss_pred             ccccccccccccccchh-hcccccceecccCCCccCC--Chh-hcCCCCCCEEECcCCcCCCCcc
Confidence            67778888888877654 7778888888888888887  653 6778888888888888887764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=1.4e-07  Score=73.72  Aligned_cols=62  Identities=24%  Similarity=0.355  Sum_probs=46.7

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .+|++|++++|.|+.+++ +..+++|+.|+|++|+|++  ++ .+..+++|+.|++++|+++.+|.
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~~l~~  107 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVKDLSS  107 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCCCGGG
T ss_pred             cCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccccccc
Confidence            466778888888887764 6677888888888888876  66 35677888888888888877764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=8.9e-08  Score=81.06  Aligned_cols=56  Identities=23%  Similarity=0.331  Sum_probs=50.9

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccC
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHN   79 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N   79 (273)
                      +++|+.|++++|+|+.+| .++++++|++|++++|+|++  +++ +.++++|+.|+|++|
T Consensus       328 l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~--l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 LTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISD--LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCB--CGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCC--Chh-hccCCCCCEeeCCCC
Confidence            457899999999999987 58999999999999999998  764 889999999999987

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.45  E-value=1.3e-07  Score=78.87  Aligned_cols=59  Identities=25%  Similarity=0.364  Sum_probs=50.7

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccch
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDA   87 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~   87 (273)
                      ++|++|+|++|+|+.||..   +++|+.|+|++|+|+.  +|..   +++|+.|+|++|+|+++|..
T Consensus       284 ~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~--l~~~---~~~L~~L~L~~N~L~~lp~~  342 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAE--VPEL---PQNLKQLHVEYNPLREFPDI  342 (353)
T ss_dssp             TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSCCCC
T ss_pred             CCCCEEECCCCccCccccc---cCCCCEEECCCCcCCc--cccc---cCCCCEEECcCCcCCCCCcc
Confidence            5789999999999999854   6789999999999998  8863   57899999999999998863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.44  E-value=4.1e-09  Score=82.07  Aligned_cols=62  Identities=31%  Similarity=0.416  Sum_probs=43.1

Q ss_pred             cEEEccCC--CCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccchh
Q psy8923          24 EHLSIVNN--NLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        24 ~~L~l~~N--~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                      +.++++.+  .++.+|.++..|++|++|+|++|+|+.  ++ .+.++++|+.|+|++|+++.+|...
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~~i~~~~   89 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLD   89 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEECSCSSHH
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccccccccc
Confidence            44566554  466677777777777777777777776  65 4667777777777777777776533

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=1.5e-07  Score=73.51  Aligned_cols=63  Identities=32%  Similarity=0.409  Sum_probs=56.5

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +++|+.|+|++|.|+.+++ ++.|++|++|++++|+|+.  +| .+.++++|+.|++++|.++.++.
T Consensus        67 l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~~~~~  129 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISDING  129 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCCCGG
T ss_pred             CCCCCEEeCCCccccCccc-cccCccccccccccccccc--cc-ccccccccccccccccccccccc
Confidence            4578999999999999984 6889999999999999998  87 58899999999999999987764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=2.1e-07  Score=73.39  Aligned_cols=54  Identities=20%  Similarity=0.313  Sum_probs=48.7

Q ss_pred             CCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEeccc
Q psy8923          21 GLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH   78 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~   78 (273)
                      ++|+.|+|++|+++.+|+ ++++++|++|+|++|+|+.  +| .+.++++|+.|++++
T Consensus       173 ~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~--i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         173 SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEE
T ss_pred             ccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCC--Cc-ccccCCCCCEEEeeC
Confidence            477889999999999875 8899999999999999998  87 478999999999984

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.39  E-value=3.2e-07  Score=70.94  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=46.6

Q ss_pred             CCCccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          20 IGLTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +.+++.|++++|.|+.++. +..+++|++|++++|++++  ++. +.++++|+.|++++|.++.+|.
T Consensus        39 l~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~~~  101 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADITP  101 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             hcCCCEEECCCCCCCCccc-cccCCCcCcCccccccccC--ccc-ccCCcccccccccccccccccc
Confidence            3466778888888877753 6677888888888888876  653 6777888888888887777764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3e-07  Score=72.97  Aligned_cols=65  Identities=18%  Similarity=0.214  Sum_probs=50.4

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEe-eccCCcCccCCCCccc-cCCCCCCEEecccCCCCCccchh
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTL-NLRYNKIKNSGIPVDL-FHLEDLTTLDLSHNNIKQIPDAL   88 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L-~l~~N~l~~~~ip~~~-~~l~~L~~L~Ls~N~l~~ip~~l   88 (273)
                      .+..|++++|+|+.++......++++.+ ++++|+|+.  +|... .++++|+.|+|++|+|+.+|...
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~--l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~  220 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE--LPNDVFHGASGPVILDISRTRIHSLPSYG  220 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCC--CCTTTTTTSCCCSEEECTTSCCCCCCSSS
T ss_pred             cceeeecccccccccccccccchhhhcccccccccccc--ccHHHhcCCCCCCEEECCCCcCCccCHHH
Confidence            5677899999999887555555665554 678888987  88764 47899999999999999888754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=9.4e-08  Score=71.64  Aligned_cols=47  Identities=23%  Similarity=0.226  Sum_probs=22.6

Q ss_pred             hhhcCCccCCEeeccCCcCccCCCCc---cccCCCCCCEEecccCCCCCccc
Q psy8923          38 GELTELQCLRTLNLRYNKIKNSGIPV---DLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        38 ~~~~~l~~L~~L~l~~N~l~~~~ip~---~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      ..+..++.|+.|+|++|+|+.  ++.   .+..+++|+.|+||+|+++.+++
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~--l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~  108 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSERE  108 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCC--CSGGGTHHHHSTTCCCCCCTTSCCCCGGG
T ss_pred             HHHHhCCCCCEeeCCCccccC--CchhHHHHhhCCcccccccccCccccchh
Confidence            333445555555555555554  321   22245555555555555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=6.7e-07  Score=70.90  Aligned_cols=65  Identities=20%  Similarity=0.280  Sum_probs=50.8

Q ss_pred             CCccEEEccCCCCCCch-hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEeccc-CCCCCccc
Q psy8923          21 GLTEHLSIVNNNLEKLF-GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSH-NNIKQIPD   86 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~lp-~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~-N~l~~ip~   86 (273)
                      +++++|+|++|+|+.|| ..|.++++|++|++++|.+.. .+|.. +.++++++.++++. |+++.++.
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~-~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC-EECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc-eeecccccccccccccccccccccccccc
Confidence            47889999999999998 578999999999999998875 45553 44788888888764 67765554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.05  E-value=3e-06  Score=70.21  Aligned_cols=57  Identities=26%  Similarity=0.294  Sum_probs=28.6

Q ss_pred             CccEEEccCCCCCCchhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEKLFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      +|++|+|++|+|+.||..   +.+|+.|++++|+++.  ++.-   .++|++|++++|+++.+|.
T Consensus        59 ~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~--l~~l---p~~L~~L~L~~n~l~~lp~  115 (353)
T d1jl5a_          59 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVSNNQLEKLPE  115 (353)
T ss_dssp             TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECCSSCCSSCCC
T ss_pred             CCCEEECCCCCCcccccc---hhhhhhhhhhhcccch--hhhh---ccccccccccccccccccc
Confidence            444555555555555433   2344555555555554  4321   1346666666666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=5.5e-07  Score=67.27  Aligned_cols=63  Identities=25%  Similarity=0.179  Sum_probs=52.9

Q ss_pred             CCCccEEEccCCCCCCch---hhhcCCccCCEeeccCCcCccCCCCcc-ccCCCCCCEEecccCCCCCc
Q psy8923          20 IGLTEHLSIVNNNLEKLF---GELTELQCLRTLNLRYNKIKNSGIPVD-LFHLEDLTTLDLSHNNIKQI   84 (273)
Q Consensus        20 l~~l~~L~l~~N~l~~lp---~~~~~l~~L~~L~l~~N~l~~~~ip~~-~~~l~~L~~L~Ls~N~l~~i   84 (273)
                      +++|++|+|++|+|+.++   ..+..+++|+.|+|++|+|+.  +++- .....+|+.|+|++|+++..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~--l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--ERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC--GGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc--chhhhhhhccccceeecCCCCcCcC
Confidence            457899999999999864   567889999999999999998  7763 23566899999999999854

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.5e-05  Score=61.26  Aligned_cols=63  Identities=24%  Similarity=0.297  Sum_probs=51.2

Q ss_pred             cCCCccEEEccCCCCCC--chhhhcCCccCCEeeccCCcCccCCCCccccCCCCCCEEeccc-CCCC
Q psy8923          19 TIGLTEHLSIVNNNLEK--LFGELTELQCLRTLNLRYNKIKNSGIPVDLFHLEDLTTLDLSH-NNIK   82 (273)
Q Consensus        19 ~l~~l~~L~l~~N~l~~--lp~~~~~l~~L~~L~l~~N~l~~~~ip~~~~~l~~L~~L~Ls~-N~l~   82 (273)
                      ...+|++|||+++.++.  ++..+..+++|++|+|+++.++. ..+..+..+++|+.|+|++ +.++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~Ls~c~~it  109 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD-PIVNTLAKNSNLVRLNLSGCSGFS  109 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH-HHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCc-HHHHHHhcCCCCcCcccccccccc
Confidence            34478889999998885  56778889999999999998885 6777788889999999988 4565

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=2e-05  Score=67.37  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=38.7

Q ss_pred             CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccC---CCCcccc-CCCCCCEEecccCCCCC
Q psy8923          22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNS---GIPVDLF-HLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~-~l~~L~~L~Ls~N~l~~   83 (273)
                      ++++|+|++|.|+.     |+..+..+++|+.|+|++|.|+..   .+...+. ..++|+.|+|++|+++.
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence            55667777777772     445566777777777777777530   0222222 23467777777777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00025  Score=60.15  Aligned_cols=63  Identities=21%  Similarity=0.236  Sum_probs=43.5

Q ss_pred             CCccEEEccCCCCCC-----chhhhcC-CccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCCC
Q psy8923          21 GLTEHLSIVNNNLEK-----LFGELTE-LQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIKQ   83 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-----lp~~~~~-l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~~   83 (273)
                      ++|++|+|++|.|+.     +...+.. ..+|+.|+|++|+++..   .++..+..+++|+.|+|++|+++.
T Consensus        55 ~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          55 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            356789999988863     2222222 34788999999888751   134556678889999999988874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0014  Score=52.55  Aligned_cols=61  Identities=28%  Similarity=0.314  Sum_probs=45.6

Q ss_pred             CCccEEEccCC--CCCC--chhhhcCCccCCEeeccCC-cCccCCCCccccCCCCCCEEeccc-CCCC
Q psy8923          21 GLTEHLSIVNN--NLEK--LFGELTELQCLRTLNLRYN-KIKNSGIPVDLFHLEDLTTLDLSH-NNIK   82 (273)
Q Consensus        21 ~~l~~L~l~~N--~l~~--lp~~~~~l~~L~~L~l~~N-~l~~~~ip~~~~~l~~L~~L~Ls~-N~l~   82 (273)
                      +.|+.|++++.  .++.  +...+..+++|+.|++++| .++. ..+..+..+++|++|+|++ +.++
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd-~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCc-hhhhhhcccCcCCEEECCCCCCCC
Confidence            46788999864  4654  4555667899999999886 4664 5667778889999999998 4565

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.49  E-value=0.00061  Score=56.18  Aligned_cols=61  Identities=23%  Similarity=0.337  Sum_probs=26.3

Q ss_pred             CccEEEccCCCCCC------chhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVNNNLEK------LFGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~------lp~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      .|+.|+|++|.|+.      +...+..+++|+.|+|++|.++..   .+...+..+++|++|+|++|+|+
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            34445555555442      112234444555555555554320   01223334455555555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.34  E-value=0.00077  Score=55.54  Aligned_cols=61  Identities=23%  Similarity=0.188  Sum_probs=47.5

Q ss_pred             CCccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCC----CCcccc--CCCCCCEEecccCCCC
Q psy8923          21 GLTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSG----IPVDLF--HLEDLTTLDLSHNNIK   82 (273)
Q Consensus        21 ~~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~----ip~~~~--~l~~L~~L~Ls~N~l~   82 (273)
                      ++|+.|+|++|.|+.     +...+..+++|+.|+|++|.|+. .    +-..+.  ..+.|+.|++++|+++
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~-~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccCc-hhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            467889999999974     45678889999999999999985 2    112222  2367999999999987

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.14  E-value=0.0012  Score=48.57  Aligned_cols=61  Identities=16%  Similarity=0.225  Sum_probs=36.1

Q ss_pred             CccEEEccC-CCCCC--c---hhhhcCCccCCEeeccCCcCccC---CCCccccCCCCCCEEecccCCCC
Q psy8923          22 LTEHLSIVN-NNLEK--L---FGELTELQCLRTLNLRYNKIKNS---GIPVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~-N~l~~--l---p~~~~~l~~L~~L~l~~N~l~~~---~ip~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      .|+.|+|++ |.|+.  +   -..+...+.|+.|+|++|.+...   .+...+...+.|+.|+|++|.++
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            456677776 34653  2   24566667777777777777530   11122334567777777777766

>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0024  Score=47.32  Aligned_cols=37  Identities=32%  Similarity=0.655  Sum_probs=33.3

Q ss_pred             EecCCCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHH
Q psy8923         184 PVPVLSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVF  220 (273)
Q Consensus       184 ev~~~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~  220 (273)
                      .++++.+.+.++-||++|+|..+|+|.|+.+++.-..
T Consensus        33 ~l~lS~e~l~~~G~YLld~G~~~~LwvG~~v~p~ll~   69 (173)
T d1pd0a4          33 PINATSSLFERYGLYLIDNGNELFLWMGGDAVPALVF   69 (173)
T ss_dssp             CBCSSGGGCCTTCEEEEECSSCEEEEECTTCCHHHHH
T ss_pred             cccchHHHccCCCEEEEECCCEEEEEECCCCCHHHHH
Confidence            3578899999999999999999999999999998654

>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: C-terminal, gelsolin-like domain of Sec23/24
family: C-terminal, gelsolin-like domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0028  Score=46.92  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=25.4

Q ss_pred             CCceEEEEeCCceEEEEeCCCcchHhHHhH
Q psy8923         237 KNTFVFLLDAGLKLFIWNGPKAKNTFKSKT  266 (273)
Q Consensus       237 ~~~~v~~ld~~~~~~~w~G~~a~~~~~~~~  266 (273)
                      ..+-|||+|+|..+|+|+|+.++++--++-
T Consensus        42 ~~~G~YLld~G~~~~LwvG~~v~p~ll~dl   71 (173)
T d1pd0a4          42 ERYGLYLIDNGNELFLWMGGDAVPALVFDV   71 (173)
T ss_dssp             CTTCEEEEECSSCEEEEECTTCCHHHHHHH
T ss_pred             cCCCEEEEECCCEEEEEECCCCCHHHHHHH
Confidence            445699999999999999999999876543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.89  E-value=0.0022  Score=47.08  Aligned_cols=65  Identities=14%  Similarity=0.200  Sum_probs=50.8

Q ss_pred             CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCC---CCccccCCCCCCEEecccCCCCCccc
Q psy8923          22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDLSHNNIKQIPD   86 (273)
Q Consensus        22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~---ip~~~~~l~~L~~L~Ls~N~l~~ip~   86 (273)
                      .|+.|+|++|.|+.     +...+...+.|+.|+|++|.++...   +-.++...++|+.|+|++|++..+..
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~  117 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  117 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence            67889999999984     3466777899999999999998611   12245567889999999998877654

>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0087  Score=41.30  Aligned_cols=55  Identities=13%  Similarity=0.244  Sum_probs=40.4

Q ss_pred             eeEEEEecCcccCCCCceEEEEec-CCCCCCCCCCEEEEE-----CC---CeEEEEeCCCCCHHHHHHhhhhh
Q psy8923         163 TRLYRVHAPLHQAQASSIHLEPVP-VLSESLDPRFVFLLD-----AG---LKLFIWNGPKAKNTFVFLLDAGL  226 (273)
Q Consensus       163 ~~L~~v~g~~~~~~~~~~~~~ev~-~~~ssL~s~dvfild-----~~---~~~~vW~G~~s~~~e~~~~~~~~  226 (273)
                      ..++++.+.         ...+|| .....|.++||||+-     .+   ..+|.|.|+.|+.+|+..+...+
T Consensus         9 ~~VWrI~~~---------~~~~vp~~~~G~Fy~gd~Yiv~~~y~~~g~~~~~iy~W~G~~ss~~e~~~aa~~a   72 (121)
T d2fh1a1           9 KQIWRIEGS---------NKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILT   72 (121)
T ss_dssp             EEEEEEETT---------EEEECCGGGTTEEETTSEEEEEEEEEETTEEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred             EEEEEEeCC---------EEeECCcccccEEeCCCeEEEEEEEEcCCCceEEEEEEECCCCCHHHHHHHHHHH
Confidence            356777654         566665 345778999999984     23   23899999999999988876543

>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Gelsolin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.022  Score=39.36  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=39.8

Q ss_pred             eEEEEecCcccCCCCceEEEEec-CCCCCCCCCCEEEEE------CCC---eEEEEeCCCCCHHHHHHhhhh
Q psy8923         164 RLYRVHAPLHQAQASSIHLEPVP-VLSESLDPRFVFLLD------AGL---KLFIWNGPKAKNTFVFLLDAG  225 (273)
Q Consensus       164 ~L~~v~g~~~~~~~~~~~~~ev~-~~~ssL~s~dvfild------~~~---~~~vW~G~~s~~~e~~~~~~~  225 (273)
                      ...++.+.         ...+|| .....+.++||||+-      ++.   .+|.|.|+.|+.+++..+...
T Consensus        17 ~VWrIe~~---------~~~~vp~~~~G~Fy~gd~YIil~ty~~~~g~~~~~iy~W~G~~ss~~e~~~aa~~   79 (124)
T d3cipg1          17 QIWRVEKF---------DLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIF   79 (124)
T ss_dssp             EEEEEETT---------EEEECCGGGTTEEETTCEEEEEEEEECTTSCEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred             EEEEEeCC---------EEEECCHHHccEEeCCCEEEEEEEEEcCCCCEeEEEEEEECCCCChhHHHHHHHH
Confidence            56777754         566775 456788999999983      232   389999999999999886643

>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Macrophage capping protein Cap G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.018  Score=39.13  Aligned_cols=52  Identities=15%  Similarity=0.134  Sum_probs=38.8

Q ss_pred             eEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEEC-----CCeEEEEeCCCCCHHHHHHhhh
Q psy8923         164 RLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDA-----GLKLFIWNGPKAKNTFVFLLDA  224 (273)
Q Consensus       164 ~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~-----~~~~~vW~G~~s~~~e~~~~~~  224 (273)
                      ..+|+.+.         ...+||. ....+.++||||+--     ...+|.|.|+.|+.+|+-.+..
T Consensus        12 ~VWrIe~~---------~~~~v~~~~~G~Fy~gd~Yivl~~y~~~~~~i~fW~G~~ss~de~g~aa~   69 (114)
T d1j72a1          12 HVWRVEKL---------KPVPVAQENQGVFFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAV   69 (114)
T ss_dssp             EEEEECSS---------SEEECCTTTTTEEETTSEEEEEEECSSSCEEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEcCC---------EEEECChHHcCeeeCCCEEEEEEecCCcceEEEEEEcCCCCHHHHHHHHH
Confidence            46676654         4566654 457889999999863     2359999999999999977654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.95  E-value=0.013  Score=42.60  Aligned_cols=61  Identities=15%  Similarity=0.127  Sum_probs=45.0

Q ss_pred             CCccEEEccC-CCCCC-----chhhhcCCccCCEeeccCCcCccCCC----CccccCCCCCCEEecccCCCC
Q psy8923          21 GLTEHLSIVN-NNLEK-----LFGELTELQCLRTLNLRYNKIKNSGI----PVDLFHLEDLTTLDLSHNNIK   82 (273)
Q Consensus        21 ~~l~~L~l~~-N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~i----p~~~~~l~~L~~L~Ls~N~l~   82 (273)
                      +.|+.|+|++ |.|+.     +-..+...++|+.|+|++|.++. .-    -..+...++++.+++++|.++
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~-~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSND-PVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCH-HHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccH-HHHHHHHHHHhhcccchhhhhcccccc
Confidence            4567799987 56874     22667788999999999998865 21    123446688999999999887

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.85  E-value=0.035  Score=40.14  Aligned_cols=61  Identities=25%  Similarity=0.280  Sum_probs=45.6

Q ss_pred             CccEEEccCCCCCC-----chhhhcCCccCCEeeccCCcCccCC---CCccccCCCCCCEEec--ccCCCC
Q psy8923          22 LTEHLSIVNNNLEK-----LFGELTELQCLRTLNLRYNKIKNSG---IPVDLFHLEDLTTLDL--SHNNIK   82 (273)
Q Consensus        22 ~l~~L~l~~N~l~~-----lp~~~~~l~~L~~L~l~~N~l~~~~---ip~~~~~l~~L~~L~L--s~N~l~   82 (273)
                      .|+.|+|++|.|+.     |-..+...++++.+++++|.+....   +-..+...++|+.++|  ++|++.
T Consensus        47 ~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          47 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            67889999999985     3356777899999999999986511   2245567788987655  566765

>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Gelsolin-like
domain: Villin, domain 1 (res. 1-126)
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.72  E-value=0.046  Score=37.78  Aligned_cols=65  Identities=11%  Similarity=0.248  Sum_probs=44.0

Q ss_pred             eEEEEecCcccCCCCceEEEEecC-CCCCCCCCCEEEEECCCeEEEEeCCCCCHHHHHHhhhhhccccccCCCCCCceEE
Q psy8923         164 RLYRVHAPLHQAQASSIHLEPVPV-LSESLDPRFVFLLDAGLKLFIWNGPKAKNTFVFLLDAGLKLFIWNGPKAKNTFVF  242 (273)
Q Consensus       164 ~L~~v~g~~~~~~~~~~~~~ev~~-~~ssL~s~dvfild~~~~~~vW~G~~s~~~e~~~~~~~~~~~fw~~~~~~~~~v~  242 (273)
                      ..+++.+.         ...+||. ....+.++||||+-     |.....                     ..       
T Consensus        19 ~VWrIe~~---------~~~~vp~~~~G~Fysgd~Yivl-----~ty~~~---------------------~~-------   56 (126)
T d2vika_          19 QIWRIENM---------EMVPVPTKSYGNFYEGDCYVLL-----STRKTG---------------------SG-------   56 (126)
T ss_dssp             EEEECGGG---------SCCEECTTTTTCCCSSSCEEEE-----EEEECS---------------------SS-------
T ss_pred             EEEEEeCC---------EEEECChHHcCEEeCCCEEEEE-----EEEEcC---------------------CC-------
Confidence            46676655         3446654 45789999999985     222111                     00       


Q ss_pred             EEeCCceEEEEeCCCcchHhHHhHHHHhhhC
Q psy8923         243 LLDAGLKLFIWNGPKAKNTFKSKTRLLAEKI  273 (273)
Q Consensus       243 ~ld~~~~~~~w~G~~a~~~~~~~~~~~~~~~  273 (273)
                         ....||.|+|++|+..++..|...|.+|
T Consensus        57 ---~~~~iy~W~G~~ss~~e~~~aa~~a~eL   84 (126)
T d2vika_          57 ---FSYNIHYWLGKNSSQDEQGAAAIYTTQM   84 (126)
T ss_dssp             ---EEEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             ---cEEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence               0236999999999999999887777653