Psyllid ID: psy8945

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MVLSDVECGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWILDR
cccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEEEcccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccc
cEEEEEEccccccccccccEEEEEEEEEEccccccEEEEEccccccccccccEEEEEcccccccccEEEEEccccccccccEcccccccHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEccccEEEEccccEEEEccccccccccccccHHHHHHHHHHHHHHccccccc
mvlsdvecgrladsldvpdiqfhhdpmsvrdwitnpvnasstnmspfayydgitvrpillkpksrgyiqlnatdplwgpplifpkfftkkpdlDVFVAGMKLGASIVQTEAMQKIHARlvdvsppqcvfykfgtWDYWACIAMQFtgtiyhpvgtckmgpkddpgsvvdARLRVHGVENLrvvdasimpkivrgntnaptIMIAEKAADMIkedwildr
mvlsdvecgRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVenlrvvdasimpkivrgntnaptiMIAEKAadmikedwildr
MVLSDVECGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWILDR
*******CGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWI***
MVLSDVECGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWIL**
MVLSDVECGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWILDR
MVLSDVECGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKED*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVLSDVECGRLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWILDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query219 2.2.26 [Sep-21-2011]
P18172625 Glucose dehydrogenase [ac no N/A 0.913 0.32 0.407 4e-37
P18173625 Glucose dehydrogenase [ac no N/A 0.913 0.32 0.398 6e-36
Q00593558 Alcohol dehydrogenase [ac N/A N/A 0.803 0.315 0.433 1e-30
Q9WWW2552 Alcohol dehydrogenase [ac yes N/A 0.803 0.318 0.408 6e-28
Q47944531 L-sorbose 1-dehydrogenase yes N/A 0.831 0.342 0.371 7e-25
Q1QXE1560 Choline dehydrogenase OS= no N/A 0.844 0.330 0.344 2e-24
B4SHV9560 Choline dehydrogenase OS= yes N/A 0.858 0.335 0.349 2e-24
B2FQ89560 Choline dehydrogenase OS= yes N/A 0.826 0.323 0.346 3e-24
P64264528 Uncharacterized GMC-type yes N/A 0.735 0.304 0.366 3e-24
P64263528 Uncharacterized GMC-type yes N/A 0.735 0.304 0.366 3e-24
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4 Back     alignment and function desciption
 Score =  154 bits (389), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 111/206 (53%), Gaps = 6/206 (2%)

Query: 10  RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
           R AD  ++PD+Q +          T  V    +N S       I + P +L PKSRGYI 
Sbjct: 409 RWADRPNLPDLQLYFGGYLASCARTGQVGELLSNNS-----RAIQIFPAVLNPKSRGYIT 463

Query: 70  LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVF 129
           L + DPL  PP IF  + T + D+   V G+K    + QT  +++   RL       C  
Sbjct: 464 LRSADPL-DPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKGCES 522

Query: 130 YKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMP 189
           + F +  YW C   Q TG   H  G+CKMGP  DP +VV+  LRVHGV  LRV+D SIMP
Sbjct: 523 HAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVMDTSIMP 582

Query: 190 KIVRGNTNAPTIMIAEKAADMIKEDW 215
           K+  GNT+AP +MIAEK A ++K  W
Sbjct: 583 KVTAGNTHAPAVMIAEKGAYLLKRAW 608

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3 Back     alignment and function description
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1 Back     alignment and function description
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3 SV=1 Back     alignment and function description
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1 Back     alignment and function description
>sp|Q1QXE1|BETA1_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain R551-3) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain K279a) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3 SV=1 Back     alignment and function description
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316 OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
328720713 669 PREDICTED: glucose dehydrogenase [accept 0.958 0.313 0.618 1e-74
350401258 794 PREDICTED: glucose dehydrogenase [accept 0.963 0.265 0.564 2e-67
340720643 794 PREDICTED: glucose dehydrogenase [accept 0.963 0.265 0.555 3e-66
156551748 917 PREDICTED: glucose dehydrogenase [accept 0.940 0.224 0.548 8e-66
307206066 781 Glucose dehydrogenase [acceptor] [Harpeg 0.913 0.256 0.55 8e-65
242008457 635 glucose dehydrogenase precursor, putativ 0.958 0.330 0.497 1e-63
380013445260 PREDICTED: glucose dehydrogenase [accept 0.913 0.769 0.56 5e-62
383860464 802 PREDICTED: glucose dehydrogenase [accept 0.913 0.249 0.555 6e-62
66499225 800 PREDICTED: glucose dehydrogenase [accept 0.913 0.25 0.55 3e-61
357613618 553 hypothetical protein KGM_08202 [Danaus p 0.926 0.367 0.527 6e-61
>gi|328720713|ref|XP_001945176.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/215 (61%), Positives = 163/215 (75%), Gaps = 5/215 (2%)

Query: 6   VECG-----RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILL 60
           ++CG     +  D+LD+PDI +  D  + +DWI +P NA+   MSP +YY+ I VRPILL
Sbjct: 440 LQCGVFLQTKYEDTLDLPDINYAFDNGNEKDWIIDPANATKFGMSPVSYYEAINVRPILL 499

Query: 61  KPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLV 120
           KPKSRGYI LN T P+WG PLI+P+FFTK  D+D+ V GMK+GA++V T +M+K  A LV
Sbjct: 500 KPKSRGYILLNETHPIWGQPLIYPRFFTKGNDIDILVEGMKIGANLVNTASMRKAGAELV 559

Query: 121 DVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENL 180
           DV    C  YKFG+  YWAC+A ++T TIYHPVGTCKMGP+ D  +VVD  LRVHGVE L
Sbjct: 560 DVPAKACKAYKFGSDKYWACVATEYTATIYHPVGTCKMGPEQDEEAVVDPELRVHGVEGL 619

Query: 181 RVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215
           RVVDASIMP IVRGNTNAPTIMIAEKA+DMIK+ W
Sbjct: 620 RVVDASIMPTIVRGNTNAPTIMIAEKASDMIKDKW 654

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom:

>gi|350401258|ref|XP_003486101.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340720643|ref|XP_003398743.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|156551748|ref|XP_001602062.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307206066|gb|EFN84159.1| Glucose dehydrogenase [acceptor] [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|242008457|ref|XP_002425020.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212508669|gb|EEB12282.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|380013445|ref|XP_003690767.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Apis florea] Back     alignment and taxonomy information
>gi|383860464|ref|XP_003705709.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|66499225|ref|XP_394222.2| PREDICTED: glucose dehydrogenase [acceptor] [Apis mellifera] Back     alignment and taxonomy information
>gi|357613618|gb|EHJ68619.1| hypothetical protein KGM_08202 [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
FB|FBgn0030591865 CG9517 [Drosophila melanogaste 0.917 0.232 0.457 3.7e-44
FB|FBgn0030596633 CG12398 [Drosophila melanogast 0.771 0.266 0.476 8.8e-40
FB|FBgn0030598626 CG9503 [Drosophila melanogaste 0.922 0.322 0.436 1.7e-39
FB|FBgn0030588621 CG9521 [Drosophila melanogaste 0.716 0.252 0.518 2e-39
FB|FBgn0030590703 CG9518 [Drosophila melanogaste 0.922 0.287 0.431 3.2e-37
FB|FBgn0030589622 CG9519 [Drosophila melanogaste 0.744 0.262 0.481 4.3e-37
FB|FBgn0030592726 CG9514 [Drosophila melanogaste 0.753 0.227 0.469 1.2e-35
FB|FBgn0001112625 Gld "Glucose dehydrogenase" [D 0.913 0.32 0.398 6e-33
FB|FBgn0039415616 CG6142 [Drosophila melanogaste 0.716 0.254 0.431 2e-31
FB|FBgn0030586626 CG12539 [Drosophila melanogast 0.771 0.269 0.429 9.7e-31
FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 473 (171.6 bits), Expect = 3.7e-44, P = 3.7e-44
 Identities = 96/210 (45%), Positives = 134/210 (63%)

Query:    14 SLDVPDIQFHHDPMSVR----DWITNPVNAS----STNMSPFAYYDGITVRPILLKPKSR 65
             S+D PD+QFH  P S+     + I   +N      +T   P  + +  ++ P+LL+PKS 
Sbjct:   648 SVDWPDVQFHFCPSSINSDGGEQIRKILNLRDGFYNTVYKPLQHSETWSILPLLLRPKST 707

Query:    66 GYIQLNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPP 125
             G+++LN+ +P   P +I P +F  + D+DV V G+KL  ++  T+A Q+  +RL ++  P
Sbjct:   708 GWVRLNSRNPQHQPKII-PNYFAHQEDIDVLVEGIKLAINVSNTQAFQRFGSRLHNIPLP 766

Query:   126 QCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDA 185
              C    F + +YWAC   +FT TIYHP GTC+MGP  D  +VVD RLRV+GV  +RVVDA
Sbjct:   767 GCRHLPFQSNEYWACCIKEFTFTIYHPAGTCRMGPSWDVTAVVDPRLRVYGVSGVRVVDA 826

Query:   186 SIMPKIVRGNTNAPTIMIAEKAADMIKEDW 215
             SIMP IV GN NAP I I EKA+D+IKEDW
Sbjct:   827 SIMPTIVNGNPNAPVIAIGEKASDLIKEDW 856
GO:0004344 "glucose dehydrogenase activity" evidence=ISS
GO:0006066 "alcohol metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008812 "choline dehydrogenase activity" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030586 CG12539 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
PRK02106560 PRK02106, PRK02106, choline dehydrogenase; Validat 6e-46
pfam05199139 pfam05199, GMC_oxred_C, GMC oxidoreductase 2e-42
COG2303542 COG2303, BetA, Choline dehydrogenase and related f 5e-39
TIGR01810532 TIGR01810, betA, choline dehydrogenase 5e-36
TIGR03970487 TIGR03970, Rv0697, dehydrogenase, Rv0697 family 1e-22
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated Back     alignment and domain information 
 Score =  159 bits (404), Expect = 6e-46
 Identities = 75/204 (36%), Positives = 102/204 (50%), Gaps = 22/204 (10%)

Query: 10  RLADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQ 69
           R    +D P+IQ+H  P+++R   +N V              G       ++  SRG ++
Sbjct: 350 RSRAGVDWPNIQYHFLPVAIRYDGSNAVKG-----------HGFQAHVGPMRSPSRGSVK 398

Query: 70  LNATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSP-PQCV 128
           L + DP    P I   + + + D   F   ++L   I+   A+     R  ++SP     
Sbjct: 399 LKSADPR-AHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGR--EISPGADVQ 455

Query: 129 FYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIM 188
             +    D +     +   T YHP  TCKMG   DP +VVD   RVHGVE LRVVDASIM
Sbjct: 456 TDE--EIDAFV---REHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIM 508

Query: 189 PKIVRGNTNAPTIMIAEKAADMIK 212
           P I  GN NAPTIMIAEKAAD+I+
Sbjct: 509 PTITNGNLNAPTIMIAEKAADLIR 532

Length = 560
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase Back     alignment and domain information
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase Back     alignment and domain information
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 219
KOG1238|consensus623 100.0
PF05199144 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078 100.0
TIGR01810532 betA choline dehydrogenase. This enzyme is a membe 100.0
PRK02106560 choline dehydrogenase; Validated 100.0
PLN02785587 Protein HOTHEAD 100.0
COG2303542 BetA Choline dehydrogenase and related flavoprotei 100.0
TIGR02462544 pyranose_ox pyranose oxidase. Pyranose oxidase (al 99.9
COG1252405 Ndh NADH dehydrogenase, FAD-containing subunit [En 87.73
PTZ00318424 NADH dehydrogenase-like protein; Provisional 81.7
>KOG1238|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.7e-54  Score=394.64  Aligned_cols=209  Identities=44%  Similarity=0.700  Sum_probs=187.7

Q ss_pred             eeeecc------cCCCCCCCEEEEeccccccccc-------CCCccCCCCCCCCCCCCCcEEEEEEeeccCCCeEEEcCC
Q psy8945           6 VECGRL------ADSLDVPDIQFHHDPMSVRDWI-------TNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNA   72 (219)
Q Consensus         6 ~~~~~~------~~~~~~Pdiql~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG~V~L~s   72 (219)
                      +|+.+|      ..+.+|||+|+++.+.....+-       ..++|  ...+.+....+.|.++..+++|+|||+|+|+|
T Consensus       397 ~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y--~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s  474 (623)
T KOG1238|consen  397 VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALGEIY--QALFGELTNSDSFVIFPKLLRPKSRGRLKLRS  474 (623)
T ss_pred             ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcchHH--HHhhhhhhcCceeEEeehhcCCCccceEEecC
Confidence            688888      3366899999999987776551       11222  22233344455799999999999999999999


Q ss_pred             CCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHHHHHHHHhhccCccccc
Q psy8945          73 TDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHP  152 (219)
Q Consensus        73 ~dp~~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~  152 (219)
                      +|| .+.|+|++|||++|+|++.+++|++.+.++.++++|++++.+++..+.|+|+.....+|++|+||+|.++.+.||+
T Consensus       475 ~nP-~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~  553 (623)
T KOG1238|consen  475 TNP-RDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHY  553 (623)
T ss_pred             CCC-CcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeecc
Confidence            999 9999999999999999999999999999999999999999999988899999888999999999999999999999


Q ss_pred             CCccccCCCCCCCCcccCCCeEeccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhcc
Q psy8945         153 VGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKEDWIL  217 (219)
Q Consensus       153 ~GTc~MG~~~d~~~VVD~~lrV~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~~~~  217 (219)
                      +|||+||+..|+++|||+++|||||+|||||||||||.+|++|||+|+||||||+|++||++|..
T Consensus       554 ~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~  618 (623)
T KOG1238|consen  554 SGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLA  618 (623)
T ss_pred             CCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999853

>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] Back     alignment and domain information
>TIGR01810 betA choline dehydrogenase Back     alignment and domain information
>PRK02106 choline dehydrogenase; Validated Back     alignment and domain information
>PLN02785 Protein HOTHEAD Back     alignment and domain information
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02462 pyranose_ox pyranose oxidase Back     alignment and domain information
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] Back     alignment and domain information
>PTZ00318 NADH dehydrogenase-like protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
2jbv_A546 Crystal Structure Of Choline Oxidase Reveals Insigh 3e-20
3nne_A546 Crystal Structure Of Choline Oxidase S101a Mutant L 3e-20
3ljp_A546 Crystal Structure Of Choline Oxidase V464a Mutant L 6e-20
3fim_B566 Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu 2e-14
1cf3_A583 Glucose Oxidase From Apergillus Niger Length = 583 1e-12
3t37_A526 Crystal Structure Of Pyridoxine 4-Oxidase From Meso 2e-10
1gpe_A587 Glucose Oxidase From Penicillium Amagasakiense Leng 4e-10
3q9t_A577 Crystal Structure Analysis Of Formate Oxidase Lengt 2e-09
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546 Back     alignment and structure 
Iteration: 1

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 13  DSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNA 72
           D LD PD+  H+  +        P + ++         +G ++ P +   +SRG ++L +
Sbjct: 341 DGLDRPDLMMHYGSV--------PFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRS 392
Query: 73  TDPLWGPPLIFPKFFT--KKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFY 130
            D     P++ P++FT  +  D+ V VAG++    I    AM +   R  ++SP      
Sbjct: 393 RD-FRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGR--ELSPGVEAQT 449
Query: 131 KFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPK 190
                DY      +   T+YHPVGT +MG  +D  S +D  LRV GV  LRV DAS+MP+
Sbjct: 450 DEELQDY----IRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPE 505
Query: 191 IVRGNTNAPTIMIAEKAADMIK 212
            V  N N   +MI E+ AD+I+
Sbjct: 506 HVTVNPNITVMMIGERCADLIR 527
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546 Back     alignment and structure
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546 Back     alignment and structure
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566 Back     alignment and structure
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583 Back     alignment and structure
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526 Back     alignment and structure
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587 Back     alignment and structure
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 1e-82
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 2e-82
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 1e-79
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 6e-76
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 9e-75
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 2e-70
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 3e-67
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 1e-63
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 6e-19
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 5e-15
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 4e-13
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587 Back     alignment and structure
 Score =  255 bits (654), Expect = 1e-82
 Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 10/202 (4%)

Query: 14  SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNAT 73
           ++    +Q+ +    + D         +           I      L P +RG + + ++
Sbjct: 392 NVTALKVQYENYRNWLLD------EDVAFAELFMDTEGKINFDLWDLIPFTRGSVHILSS 445

Query: 74  DPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFG 133
           DP        PKFF  + DL    A  KL   +    AM++  A       P     +  
Sbjct: 446 DPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL---PGYNLVQNA 502

Query: 134 TWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRVHGVENLRVVDASIMPKIVR 193
           T   W+   +Q     +H V +C M    + G VVDA  +V+G + LRV+D SI P  V 
Sbjct: 503 TLSQWSDYVLQNFRPNWHAVSSCSMMS-RELGGVVDATAKVYGTQGLRVIDGSIPPTQVS 561

Query: 194 GNTNAPTIMIAEKAADMIKEDW 215
            +       +A K AD I +D+
Sbjct: 562 SHVMTIFYGMALKVADAILDDY 583
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583 Back     alignment and structure
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566 Back     alignment and structure
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577 Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526 Back     alignment and structure
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536 Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546 Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 100.0
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 100.0
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 100.0
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 100.0
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 100.0
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 100.0
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 100.0
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 100.0
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 99.97
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 99.97
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 99.94
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Back     alignment and structure
Probab=100.00  E-value=1.3e-46  Score=349.08  Aligned_cols=183  Identities=26%  Similarity=0.411  Sum_probs=158.5

Q ss_pred             CCCCCEEEEecccccccccCCCccCCCCCCCCCCCCCcEEEEEEeeccCCCeEEEcCCCCCCCCCceeeeCCCCCHHHHH
Q psy8945          15 LDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLNATDPLWGPPLIFPKFFTKKPDLD   94 (219)
Q Consensus        15 ~~~Pdiql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG~V~L~s~dp~~~~P~I~~~yl~~~~D~~   94 (219)
                      ...||+|+++.+.....     .      +......++|++.+.+++|+|||+|+|+|+|| ++.|+|++|||++|.|++
T Consensus       383 ~~~pd~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp-~~~P~i~~~yl~~~~D~~  450 (566)
T 3fim_B          383 PNSAHWETIFSNQWFHP-----A------IPRPDTGSFMSVTNALISPVARGDIKLATSNP-FDKPLINPQYLSTEFDIF  450 (566)
T ss_dssp             TTSCSEEEEEESSCCCT-----T------SCCCSSCCEEEEEEEESSCSCCBEEECSSSCT-TSCCEEECCTTCSHHHHH
T ss_pred             CCCCCEEEEecccchhh-----c------ccCCCCCCEEEEEEeecCCccceEEEecCCCC-CCCceeccccCCCccHHH
Confidence            35799999887643311     0      11122347899999999999999999999999 999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHhhhcccccCCCCcccccCCCHHHHHHHHhhccCcccccCCccccCCCCCCCCcccCCCeE
Q psy8945          95 VFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYKFGTWDYWACIAMQFTGTIYHPVGTCKMGPKDDPGSVVDARLRV  174 (219)
Q Consensus        95 ~l~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~d~~~VVD~~lrV  174 (219)
                      .|+++++.+++|+++++|+++...+..   |++  ....+|++|++|||+...+.||++||||||++++.++|||++|||
T Consensus       451 ~~~~~~~~~~~i~~~~~~~~~~~~~~~---P~~--~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV  525 (566)
T 3fim_B          451 TMIQAVKSNLRFLSGQAWADFVIRPFD---PRL--RDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKV  525 (566)
T ss_dssp             HHHHHHHHHHHHHTSGGGTTTEEEESS---GGG--SCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBB
T ss_pred             HHHHHHHHHHHHHhCcccCCccccccC---CCc--ccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeE
Confidence            999999999999999999887655432   431  235789999999999999999999999999877555999999999


Q ss_pred             eccCCeEEecCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q psy8945         175 HGVENLRVVDASIMPKIVRGNTNAPTIMIAEKAADMIKED  214 (219)
Q Consensus       175 ~Gv~nLrV~DaSv~P~~~~~np~~t~~~iaer~a~~i~~~  214 (219)
                      ||++|||||||||||.++++||++|+||||||+||+|+++
T Consensus       526 ~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~  565 (566)
T 3fim_B          526 KGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD  565 (566)
T ss_dssp             TTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999875
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Back     alignment and structure
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Back     alignment and structure
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Back     alignment and structure
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 219
d1cf3a2196 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus 4e-24
d1cf3a1385 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper 5e-24
d1gpea2196 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium 6e-24
d1kdga1360 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain 4e-22
d1gpea1391 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic 1e-18
d1ju2a2170 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond 1e-16
d2f5va1379 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W 4e-16
d1kdga2181 d.16.1.1 (A:513-693) Flavoprotein domain of flavoc 4e-10
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 92.9 bits (230), Expect = 4e-24
 Identities = 28/144 (19%), Positives = 41/144 (28%), Gaps = 13/144 (9%)

Query: 12  ADSLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLN 71
              L   +               + V  S   +         +     L P +RGY+ + 
Sbjct: 66  TALLIQYENYRDWIV-------NHNVAYSELFLDTA---GVASFDVWDLLPFTRGYVHIL 115

Query: 72  ATDPLWGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDVSPPQCVFYK 131
             DP        P++F  + DL    A  +L  +I  + AMQ   A       P      
Sbjct: 116 DKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGET---IPGDNLAY 172

Query: 132 FGTWDYWACIAMQFTGTIYHPVGT 155
                 W           YH VGT
Sbjct: 173 DADLSAWTEYIPYHFRPNYHGVGT 196
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 Back     information, alignment and structure
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196 Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 Back     information, alignment and structure
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170 Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
d1ju2a2170 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 99.91
d1gpea2196 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.88
d1cf3a2196 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.87
d1kdga2181 Flavoprotein domain of flavocytochrome cellobiose 99.83
d2f5va1379 Pyranose 2-oxidase {White-rot fungus (Peniophora s 99.71
d1cf3a1385 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.58
d1kdga1360 Flavoprotein domain of flavocytochrome cellobiose 99.32
d1gpea1391 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.19
d1n4wa1367 Cholesterol oxidase of GMC family {Streptomyces sp 97.58
d3coxa1370 Cholesterol oxidase of GMC family {Brevibacterium 97.33
d2f5va2198 Pyranose 2-oxidase {White-rot fungus (Peniophora s 87.4
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.91  E-value=7.7e-25  Score=171.90  Aligned_cols=142  Identities=14%  Similarity=0.157  Sum_probs=112.5

Q ss_pred             CcccceeeecccC---CCCCCCEEEEecccccccccCCCccCCCCCCCCCCCCCcEEEEEEeeccCCCeEEEcC-CCCCC
Q psy8945           1 MVLSDVECGRLAD---SLDVPDIQFHHDPMSVRDWITNPVNASSTNMSPFAYYDGITVRPILLKPKSRGYIQLN-ATDPL   76 (219)
Q Consensus         1 ~~~~~~~~~~~~~---~~~~Pdiql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~~P~SrG~V~L~-s~dp~   76 (219)
                      +.++..|+++|..   ....|++|+++.|..+...          ...+......+++...+++|+|||+|+|+ |+|| 
T Consensus        18 ~~~s~~q~~G~~~~~~~~~~p~lq~~~~p~~~~~~----------~~~p~~~~~~~~i~~~l~~P~SrG~v~L~~S~dp-   86 (170)
T d1ju2a2          18 IEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPS----------SSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNV-   86 (170)
T ss_dssp             CCCCCCCEEEECSSEEEEEEEECCCSSCCBTTBSS----------SCCCCCSSCEEEEEEEESSCSCCEEEECSCSSCT-
T ss_pred             cccchhhEEEEecCchhhcCCCcccccCccccccc----------CCCCCCCCCeeEeecccCCccccceEEecCCCCc-
Confidence            3567889988833   3456888988887654211          12244445677899999999999999997 8999 


Q ss_pred             CCCceeeeCCCCCHHHHHHHHHHHHHHHHHHhhHHHHHhhhccccc-------CCCCcccccCCCHHHHHHHHhhccCcc
Q psy8945          77 WGPPLIFPKFFTKKPDLDVFVAGMKLGASIVQTEAMQKIHARLVDV-------SPPQCVFYKFGTWDYWACIAMQFTGTI  149 (219)
Q Consensus        77 ~~~P~I~~~yl~~~~D~~~l~~g~~~~~~i~~~~~~~~~~~~~~~~-------~~p~~~~~~~~~~~~~~~~i~~~~~~~  149 (219)
                      .+.|+|++|||++|.|++.+++|+|.+++|+++++|+++...++..       ..|+..  ...+|++|++|+|+++.|.
T Consensus        87 ~~~P~i~~nyl~~~~D~~~~v~~~~~~r~i~~~~~~~~~~~~e~~p~~~~~~~~~p~p~--~~~dde~l~~~iR~~~~T~  164 (170)
T d1ju2a2          87 RVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPK--DQTDDAAFETFCRESVASY  164 (170)
T ss_dssp             TSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCS--CTTCHHHHHHHHHHHCEEC
T ss_pred             ccCcccCcccccCchhHHHHHHHHHHHHHHHcChhhhhccccccccccccccccCCCcc--CCCCHHHHHHHHHhcCEec
Confidence            9999999999999999999999999999999999999987665421       112221  2458999999999999999


Q ss_pred             cccCCc
Q psy8945         150 YHPVGT  155 (219)
Q Consensus       150 ~H~~GT  155 (219)
                      ||++|+
T Consensus       165 yHyhgg  170 (170)
T d1ju2a2         165 WHYHGG  170 (170)
T ss_dssp             SCCEES
T ss_pred             cCCCCc
Confidence            999985
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure