Psyllid ID: psy8949

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
MSILILWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPANVISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLDPKASRSSRVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGHRTFPP
cHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccHHHHHHHHHHcHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccHHHHHHHHHcHHccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHccccEEHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MSILILWVKEflnddnhgLDSLIEYLSFRLVMMRHEyriadskhlseetlntssekcdkppyrwvkeflnddnhglDSLIEYLSFRLVMMRHEyriadskhlseetlntssetenglpastnppanvispqslghqrpsldlasspsvkkrSRHAArlnmgdpkddIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERvqakdppahylsklrtyldpkasrssrVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDelghrtfpp
MSILILWVKeflnddnhgLDSLIEYLSFRLVMMRHEYRIadskhlseetlntssekcdkppyRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPANVISPQSLGHQrpsldlasspsvkKRSRHAarlnmgdpkddIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEElqervqakdppahylSKLRtyldpkasrssRVQISAYLDNVFDVAALMEDSETKTAALEKVAEledelghrtfpp
MSILILWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHlseetlntssetenGLPASTNPPANVISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETlllhcyllclyFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLDPKASRSSRVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGHRTFPP
**ILILWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIAD*******************PYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIA********************************************************************DIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKL**************************************VQISAYLDNVFDVAALM***************************
*SILILWVKEFLNDDNHGLDSLIEYLSFRLV***********************EKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLV******************************************************************************IHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQE**Q*********************************************************************
MSILILWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHL***********CDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHL*****************STNPPANVISPQ***********************AARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTE***********DPPAHYLSKLRTYLDPKASRSSRVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGHRTFPP
MSILILWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEE*LNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEY********************************************************RSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSK****LDPK*SRSSRVQISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGHRTFPP
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MSILILWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPANVISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLDPKASRSSRVQISAYLDNVFDVAAxxxxxxxxxxxxxxxxxxxxxLGHRTFPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query493 2.2.26 [Sep-21-2011]
Q9VUC6 1183 Formin-like protein CG321 yes N/A 0.496 0.207 0.608 2e-89
A2APV2 1086 Formin-like protein 2 OS= yes N/A 0.634 0.288 0.466 9e-71
Q96PY5 1086 Formin-like protein 2 OS= yes N/A 0.634 0.288 0.463 5e-70
Q8IVF7 1028 Formin-like protein 3 OS= no N/A 0.482 0.231 0.556 4e-67
Q6ZPF4 1028 Formin-like protein 3 OS= no N/A 0.482 0.231 0.556 9e-67
O95466 1100 Formin-like protein 1 OS= no N/A 0.582 0.260 0.460 1e-64
Q9JL26 1094 Formin-like protein 1 OS= no N/A 0.569 0.256 0.447 1e-64
Q9Y4D1 1078 Disheveled-associated act no N/A 0.302 0.138 0.397 7e-24
Q8BPM0 1077 Disheveled-associated act no N/A 0.302 0.138 0.397 7e-24
Q86T65 1068 Disheveled-associated act no N/A 0.302 0.139 0.378 9e-22
>sp|Q9VUC6|Y2138_DROME Formin-like protein CG32138 OS=Drosophila melanogaster GN=CG32138 PE=1 SV=3 Back     alignment and function desciption
 Score =  330 bits (845), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/273 (60%), Positives = 201/273 (73%), Gaps = 28/273 (10%)

Query: 64  WVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENG------- 116
           WVKEFL+D N GLD+L++YLSFRL MMRHE R+      SEE LN ++  + G       
Sbjct: 186 WVKEFLDDTNQGLDALVDYLSFRLQMMRHEQRLQGVLCASEERLNLTNGGDGGEIVMGNS 245

Query: 117 --------------LPASTNPPANVI--SPQ----SLGHQRPSL-DLASSPSVKKRSRHA 155
                           ++ +  AN    S Q    S G  RP++ D   SPS+K+RSRH 
Sbjct: 246 SSVSPGGGGGLLSHGNSTGHGLANGTLDSRQQHTMSYGFLRPTIADALDSPSLKRRSRHI 305

Query: 156 ARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLEL 215
           A+LNMG   DDIHV I+CLRAIMNNKYG NMVI+H EAIN IALSL+HKSLRTKALVLEL
Sbjct: 306 AKLNMGAATDDIHVSIMCLRAIMNNKYGFNMVIQHREAINCIALSLIHKSLRTKALVLEL 365

Query: 216 LAAICLVTGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVV 275
           LAAICLV GGHEIIL +FDNFK++CQE +RF+TLM+YFMN+E F+I+FMVACMQF+NIVV
Sbjct: 366 LAAICLVKGGHEIILGSFDNFKDVCQEKRRFQTLMEYFMNFEAFNIDFMVACMQFMNIVV 425

Query: 276 HSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTET 308
           HSVEDMN+RVHLQYEF+ LGLD YL+++R TE+
Sbjct: 426 HSVEDMNYRVHLQYEFTALGLDKYLERIRLTES 458

Drosophila melanogaster (taxid: 7227)
>sp|A2APV2|FMNL2_MOUSE Formin-like protein 2 OS=Mus musculus GN=Fmnl2 PE=2 SV=2 Back     alignment and function description
>sp|Q96PY5|FMNL2_HUMAN Formin-like protein 2 OS=Homo sapiens GN=FMNL2 PE=1 SV=3 Back     alignment and function description
>sp|Q8IVF7|FMNL3_HUMAN Formin-like protein 3 OS=Homo sapiens GN=FMNL3 PE=1 SV=3 Back     alignment and function description
>sp|Q6ZPF4|FMNL3_MOUSE Formin-like protein 3 OS=Mus musculus GN=Fmnl3 PE=1 SV=2 Back     alignment and function description
>sp|O95466|FMNL_HUMAN Formin-like protein 1 OS=Homo sapiens GN=FMNL1 PE=1 SV=3 Back     alignment and function description
>sp|Q9JL26|FMNL_MOUSE Formin-like protein 1 OS=Mus musculus GN=Fmnl1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y4D1|DAAM1_HUMAN Disheveled-associated activator of morphogenesis 1 OS=Homo sapiens GN=DAAM1 PE=1 SV=2 Back     alignment and function description
>sp|Q8BPM0|DAAM1_MOUSE Disheveled-associated activator of morphogenesis 1 OS=Mus musculus GN=Daam1 PE=1 SV=4 Back     alignment and function description
>sp|Q86T65|DAAM2_HUMAN Disheveled-associated activator of morphogenesis 2 OS=Homo sapiens GN=DAAM2 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
328703354 1102 PREDICTED: formin-like protein CG32138-l 0.476 0.213 0.748 1e-104
189241310 752 PREDICTED: similar to AGAP004805-PA, par 0.470 0.308 0.706 7e-97
270014063 768 hypothetical protein TcasGA2_TC012762 [T 0.470 0.302 0.706 1e-96
345485242 1102 PREDICTED: formin-like protein CG32138-l 0.472 0.211 0.691 2e-96
340729138 1084 PREDICTED: formin-like protein CG32138-l 0.470 0.214 0.699 6e-96
158297821 1156 AGAP004805-PA [Anopheles gambiae str. PE 0.505 0.215 0.679 8e-96
383857954 1084 PREDICTED: formin-like protein CG32138-l 0.470 0.214 0.691 1e-95
158297823 1125 AGAP004805-PB [Anopheles gambiae str. PE 0.505 0.221 0.679 1e-95
380014004 1024 PREDICTED: formin-like protein CG32138-l 0.470 0.226 0.699 1e-95
307187702 1019 Formin-like protein 2 [Camponotus florid 0.470 0.227 0.703 1e-95
>gi|328703354|ref|XP_001944392.2| PREDICTED: formin-like protein CG32138-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/247 (74%), Positives = 210/247 (85%), Gaps = 12/247 (4%)

Query: 64  WVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYR-IADSKHLSEETLNTSSET-ENGLPAST 121
           WV+EFL+D NHGLDSLI+YLSFRLVMMRHEYR  AD  ++S E +N  +    NG+    
Sbjct: 169 WVREFLDDQNHGLDSLIDYLSFRLVMMRHEYRSCADVTNVSTEKINQGNHIHTNGISN-- 226

Query: 122 NPPANVISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNK 181
               NV +     H RP+LD+  SP +K+RSRHAA+LNMGD KDDIHVCI+CLRAIMNNK
Sbjct: 227 ---GNVTN-----HARPTLDVLDSPGIKRRSRHAAKLNMGDTKDDIHVCIMCLRAIMNNK 278

Query: 182 YGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQ 241
           YGLNMVI+HT+AINSIALSLMHKSLRTKALVLELLAAICLV GGHEIIL+AFDNFKE+CQ
Sbjct: 279 YGLNMVIQHTDAINSIALSLMHKSLRTKALVLELLAAICLVKGGHEIILSAFDNFKEVCQ 338

Query: 242 ESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLD 301
           E KRF+TLMDYF+NYEVFHIEFMVACMQFINI+VHSVEDMNFRVHLQYEFS LGLD YL 
Sbjct: 339 EKKRFQTLMDYFINYEVFHIEFMVACMQFINIIVHSVEDMNFRVHLQYEFSTLGLDEYLV 398

Query: 302 KLRHTET 308
           K++HTE+
Sbjct: 399 KIKHTES 405

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189241310|ref|XP_001815658.1| PREDICTED: similar to AGAP004805-PA, partial [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270014063|gb|EFA10511.1| hypothetical protein TcasGA2_TC012762 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345485242|ref|XP_003425225.1| PREDICTED: formin-like protein CG32138-like isoform 1 [Nasonia vitripennis] gi|345485244|ref|XP_003425226.1| PREDICTED: formin-like protein CG32138-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340729138|ref|XP_003402865.1| PREDICTED: formin-like protein CG32138-like [Bombus terrestris] gi|350401567|ref|XP_003486193.1| PREDICTED: formin-like protein CG32138-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|158297821|ref|XP_554547.3| AGAP004805-PA [Anopheles gambiae str. PEST] gi|157014511|gb|EAL39426.3| AGAP004805-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|383857954|ref|XP_003704468.1| PREDICTED: formin-like protein CG32138-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|158297823|ref|XP_001689075.1| AGAP004805-PB [Anopheles gambiae str. PEST] gi|157014512|gb|EDO63492.1| AGAP004805-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|380014004|ref|XP_003691034.1| PREDICTED: formin-like protein CG32138-like [Apis florea] Back     alignment and taxonomy information
>gi|307187702|gb|EFN72674.1| Formin-like protein 2 [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query493
UNIPROTKB|I3LQV1 771 LOC100738191 "Uncharacterized 0.484 0.309 0.530 1.7e-82
UNIPROTKB|F8W1F5 1027 FMNL3 "Formin-like protein 3" 0.484 0.232 0.546 1.9e-82
UNIPROTKB|Q8IVF7 1028 FMNL3 "Formin-like protein 3" 0.484 0.232 0.546 2e-82
MGI|MGI:109569 1028 Fmnl3 "formin-like 3" [Mus mus 0.484 0.232 0.546 4.3e-82
FB|FBgn0052138 1183 CG32138 [Drosophila melanogast 0.580 0.241 0.525 6.8e-82
UNIPROTKB|I3LS77 929 LOC100738191 "Uncharacterized 0.484 0.257 0.530 3.2e-81
UNIPROTKB|D4ADY1 839 D4ADY1 "Uncharacterized protei 0.292 0.171 0.737 1.1e-75
ZFIN|ZDB-GENE-041111-182 1097 fmnl2b "formin-like 2b" [Danio 0.486 0.218 0.551 4.5e-75
ZFIN|ZDB-GENE-081105-70 1088 fmnl2a "formin-like 2a" [Danio 0.490 0.222 0.530 1.7e-74
ZFIN|ZDB-GENE-030131-1571 992 fmnl3 "formin-like 3" [Danio r 0.292 0.145 0.724 2.5e-74
UNIPROTKB|I3LQV1 LOC100738191 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 619 (223.0 bits), Expect = 1.7e-82, Sum P(3) = 1.7e-82
 Identities = 131/247 (53%), Positives = 164/247 (66%)

Query:    64 WVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHXXXXXXXXXXXXXXGLPASTNP 123
             WV+EFLND+N GLD L++YLSF    +  ++   +S                       P
Sbjct:    87 WVREFLNDENKGLDVLVDYLSFAQCSVMFDFEGLESGDDGAFDKLRSWSRSI---EDLQP 143

Query:   124 PANVISP--QSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNK 181
             P+ + +P   SL        L  S    +R+   +RL     KDD+HVCILCLRAIMN +
Sbjct:   144 PSALSAPFTNSLARSARQSVLRYSTLPGRRALKNSRLV--SQKDDVHVCILCLRAIMNYQ 201

Query:   182 YGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGGHEIILAAFDNFKEICQ 241
             YG N+V+ H  A+N IALSL +K+ R   +VLELLAA+CLV GGHEIILAAFDNFKE+C+
Sbjct:   202 YGFNLVMSHPHAVNEIALSLNNKNPRAHPVVLELLAAVCLVRGGHEIILAAFDNFKEVCK 261

Query:   242 ESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLD 301
             E  RFE LM+YF N E  +I+FMVACMQFINIVVHSVEDMNFRVHLQYEF++LGL+ +L 
Sbjct:   262 ELHRFEKLMEYFRN-EDSNIDFMVACMQFINIVVHSVEDMNFRVHLQYEFTKLGLEEFLQ 320

Query:   302 KLRHTET 308
             K RHTE+
Sbjct:   321 KSRHTES 327
GO:0030036 "actin cytoskeleton organization" evidence=IEA
GO:0017048 "Rho GTPase binding" evidence=IEA
GO:0003779 "actin binding" evidence=IEA
UNIPROTKB|F8W1F5 FMNL3 "Formin-like protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IVF7 FMNL3 "Formin-like protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:109569 Fmnl3 "formin-like 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0052138 CG32138 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|I3LS77 LOC100738191 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|D4ADY1 D4ADY1 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-182 fmnl2b "formin-like 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081105-70 fmnl2a "formin-like 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1571 fmnl3 "formin-like 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VUC6Y2138_DROMENo assigned EC number0.60800.49690.2071yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
pfam06367197 pfam06367, Drf_FH3, Diaphanous FH3 Domain 8e-32
pfam06367197 pfam06367, Drf_FH3, Diaphanous FH3 Domain 9e-23
pfam06367197 pfam06367, Drf_FH3, Diaphanous FH3 Domain 1e-19
pfam06371187 pfam06371, Drf_GBD, Diaphanous GTPase-binding Doma 7e-14
>gnl|CDD|219000 pfam06367, Drf_FH3, Diaphanous FH3 Domain Back     alignment and domain information 
 Score =  120 bits (303), Expect = 8e-32
 Identities = 46/84 (54%), Positives = 61/84 (72%)

Query: 224 GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNF 283
           GGHE +L A  NFKE+C+E  RF +L+    + E  ++E+ VA MQFIN +V+S ED+NF
Sbjct: 1   GGHEKVLEATLNFKEVCRERGRFRSLVGALDSSENDNVEYKVATMQFINALVNSPEDLNF 60

Query: 284 RVHLQYEFSRLGLDSYLDKLRHTE 307
           R+HL+ EF+RLGLD  LDKLR  E
Sbjct: 61  RLHLRSEFTRLGLDRILDKLRELE 84

This region is found in the Formin-like and and diaphanous proteins. Length = 197
>gnl|CDD|219000 pfam06367, Drf_FH3, Diaphanous FH3 Domain Back     alignment and domain information
>gnl|CDD|219000 pfam06367, Drf_FH3, Diaphanous FH3 Domain Back     alignment and domain information
>gnl|CDD|219001 pfam06371, Drf_GBD, Diaphanous GTPase-binding Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 493
KOG1924|consensus 1102 100.0
KOG1923|consensus 830 99.93
PF06367197 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR01047 99.93
PF06371187 Drf_GBD: Diaphanous GTPase-binding Domain; InterPr 99.81
KOG1924|consensus 1102 99.59
PF06367197 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR01047 99.41
KOG1923|consensus 830 97.53
PF11841160 DUF3361: Domain of unknown function (DUF3361) 80.54
>KOG1924|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.3e-41  Score=359.20  Aligned_cols=294  Identities=31%  Similarity=0.471  Sum_probs=253.8

Q ss_pred             hhhhccccccccCCChhHHHHHhcccccchHHHHHHHHHHHHHHhhhhhhcccCCCccccccCCCcccCCCCCCCCCCCC
Q psy8949          47 EETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPAN  126 (493)
Q Consensus        47 t~~L~~LeisLRTn~i~WV~eFln~~n~Gl~~L~eyL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (493)
                      -+.|.+|.|||-.|+|+||++|--+   |++.+.+.|..+...          +              +           
T Consensus       159 ~~CleslRVsL~~npVSwvn~Fgve---gl~ll~~~Lkrl~ds----------k--------------~-----------  200 (1102)
T KOG1924|consen  159 LECLESLRVSLTSNPVSWVNKFGVE---GLGLLLDVLKRLRDS----------K--------------V-----------  200 (1102)
T ss_pred             HHHHHHHhhhhcCCccHHHHHhhhh---hHHHHHHHHHHHHhh----------h--------------h-----------
Confidence            4567899999999999999999986   999999999876521          0              0           


Q ss_pred             CCCCCCCCCCCCccccccChhhhhhhhhhhhccCCCCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCCh
Q psy8949         127 VISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSL  206 (493)
Q Consensus       127 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~  206 (493)
                             +.   .+                      ..+..+++|+||||+|||++|+..|+.....+..+|.+++...+
T Consensus       201 -------~~---~~----------------------~~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~p  248 (1102)
T KOG1924|consen  201 -------GS---KL----------------------DIKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREP  248 (1102)
T ss_pred             -------hh---hh----------------------HHHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCc
Confidence                   00   00                      12446999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccc--CchHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhhH
Q psy8949         207 RTKALVLELLAAICLVT--GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR  284 (493)
Q Consensus       207 ~tr~lVlELLaalCl~~--~Gh~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~R  284 (493)
                      .+++.|+.+|+++|++.  +|.++||+|++...+. ....||+++|+.+...+  .....++||+|||+++.++.|++||
T Consensus       249 nmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~-~~veRF~piv~gl~~~e--~~~l~vacmq~INal~t~p~dldfR  325 (1102)
T KOG1924|consen  249 NMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEA-KPVERFRPIVEGLDFLE--KQQLQVACMQFINALVTSPSDLDFR  325 (1102)
T ss_pred             cHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhh-cchhhhhhHHHHHhccc--hHHHHHHHHHHHHHhcCCHHHhhHH
Confidence            99999999999999997  6999999999999885 77899999999998764  6778999999999999999999999


Q ss_pred             HHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH----HHHHHHHhhhhccccchhhhhhHHHHHhhchHHHH
Q psy8949         285 VHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV----ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYL  360 (493)
Q Consensus       285 VhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~----~~~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v  360 (493)
                      +|||+||+++||..+|++++.+++..++.|+.+  |+|+++    +++|.++++...++|+|..++.             
T Consensus       326 lhlR~E~mr~gL~~~l~~l~~i~n~~ldvqlkv--fdE~~e~Dl~el~~rledir~emDd~~~~f~l-------------  390 (1102)
T KOG1924|consen  326 LHLRSEFMRDGLHKYLPDLTEINNDILDVQLKV--FDEHKEDDLEELSGRLEDIRAEMDDANEVFEL-------------  390 (1102)
T ss_pred             HHHHHHHHHHhHHHHHHHhhhhccHHHHHHHHH--HhhhhhhhHHHHHhHHHhhhhhhccHHHHHHH-------------
Confidence            999999999999999999999998888888877  566653    8999999998888777755543             


Q ss_pred             hhhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCCCcchhhhhhhhc
Q psy8949         361 DKLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYL  440 (493)
Q Consensus       361 ~~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~~~~~lSiLqhll  440 (493)
                                                                                |.+.+++.-+++||||||||||
T Consensus       391 ----------------------------------------------------------L~n~vkdT~aE~yfLSILQhll  412 (1102)
T KOG1924|consen  391 ----------------------------------------------------------LANTVKDTGAEPYFLSILQHLL  412 (1102)
T ss_pred             ----------------------------------------------------------HHHhhhhccccchHHHHHHHHH
Confidence                                                                      3345556667899999999998


Q ss_pred             ------------------------------CCCCCCCch--hHHHHHHHhhHhHHHhhccchhHHHHHHHHHHHhHhhcC
Q psy8949         441 ------------------------------DPKASRSSR--VQISAYLDNVFDVAALMEDSETKTAALEKVAELEDELGH  488 (493)
Q Consensus       441 ------------------------------~~~~~~~~~--~~~w~~ld~~v~~a~lle~~e~~~~~l~~~~~~~~~~~~  488 (493)
                                                    |+++++..+  ..+..++|.+||+|+ ++++|+|+++++|+  +++++++
T Consensus       413 lirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~yr~~l~id~~~liD~~vdkak-~eeseqkA~e~~kk--~~ke~ta  489 (1102)
T KOG1924|consen  413 LIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKYRFRLDIDLTELIDKMVDKAK-AEESEQKAAELEKK--FDKELTA  489 (1102)
T ss_pred             HHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcchhhcccCcHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHhH
Confidence                                          888887764  488899999999999 99999999999999  9998886


Q ss_pred             C
Q psy8949         489 R  489 (493)
Q Consensus       489 ~  489 (493)
                      +
T Consensus       490 ~  490 (1102)
T KOG1924|consen  490 R  490 (1102)
T ss_pred             H
Confidence            4

>KOG1923|consensus Back     alignment and domain information
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] Back     alignment and domain information
>KOG1924|consensus Back     alignment and domain information
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>KOG1923|consensus Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
2bnx_A386 Crystal Structure Of The Dimeric Regulatory Domain 1e-12
2bnx_A386 Crystal Structure Of The Dimeric Regulatory Domain 1e-08
3eg5_B383 Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W 1e-12
3eg5_B383 Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W 1e-08
1z2c_B383 Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With 1e-12
1z2c_B383 Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With 1e-08
3o4x_A330 Crystal Structure Of Complex Between Amino And Carb 2e-12
3o4x_A330 Crystal Structure Of Complex Between Amino And Carb 1e-08
3obv_A327 Autoinhibited Formin Mdia1 Structure Length = 327 2e-12
3obv_A327 Autoinhibited Formin Mdia1 Structure Length = 327 1e-08
2f31_A233 Crystal Structure Of The Autoinhibitory Switch In F 2e-12
2f31_A233 Crystal Structure Of The Autoinhibitory Switch In F 8e-09
2bap_B317 Crystal Structure Of The N-Terminal Mdia1 Armadillo 2e-12
2bap_B317 Crystal Structure Of The N-Terminal Mdia1 Armadillo 1e-08
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of Mouse Diaphaneous-Related Formin (Drf), Mdia1 Length = 386 Back     alignment and structure 
Iteration: 1

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 168 HVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTKALVLELLAAICLVTGG-- 225
           H  I CL+A MNNK+G+  +++  E I  +  ++            +LL+A+C++     
Sbjct: 76  HEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED 135
Query: 226 -HEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNFR 284
            +E +L A     E+  E +RF+ L+D   +     I   V C+Q IN ++   E+++FR
Sbjct: 136 MNERVLEAMTERAEM-DEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDFR 192
Query: 285 VHLQYEFSRLGLDSYLDKLRHTET 308
           VH++ E  RLGL   L +LR  E 
Sbjct: 193 VHIRSELMRLGLHQVLQELREIEN 216
>pdb|2BNX|A Chain A, Crystal Structure Of The Dimeric Regulatory Domain Of Mouse Diaphaneous-Related Formin (Drf), Mdia1 Length = 386 Back     alignment and structure
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 383 Back     alignment and structure
>pdb|3EG5|B Chain B, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 383 Back     alignment and structure
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 383 Back     alignment and structure
>pdb|1Z2C|B Chain B, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 383 Back     alignment and structure
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 330 Back     alignment and structure
>pdb|3O4X|A Chain A, Crystal Structure Of Complex Between Amino And Carboxy Terminal Fragments Of Mdia1 Length = 330 Back     alignment and structure
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure Length = 327 Back     alignment and structure
>pdb|3OBV|A Chain A, Autoinhibited Formin Mdia1 Structure Length = 327 Back     alignment and structure
>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin Mdia1; The DidDAD COMPLEX Length = 233 Back     alignment and structure
>pdb|2F31|A Chain A, Crystal Structure Of The Autoinhibitory Switch In Formin Mdia1; The DidDAD COMPLEX Length = 233 Back     alignment and structure
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat Region And Dimerisation Domain In Complex With The Mdia1 Autoregulatory Domain (Dad) Length = 317 Back     alignment and structure
>pdb|2BAP|B Chain B, Crystal Structure Of The N-Terminal Mdia1 Armadillo Repeat Region And Dimerisation Domain In Complex With The Mdia1 Autoregulatory Domain (Dad) Length = 317 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query493
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 1e-37
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 6e-14
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 6e-30
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 1e-09
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 5e-29
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 6e-10
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 5e-09
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 7e-18
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 8e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Length = 233 Back     alignment and structure
 Score =  136 bits (344), Expect = 1e-37
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 150 KRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRTK 209
           +        +      + H  I CL+A MNNK+G+  +++  E I  +  ++        
Sbjct: 54  RLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM 113

Query: 210 ALVLELLAAICLV---TGGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVA 266
               +LL+A+C++      +E +L A     E   E +RF+ L+D   +     I   V 
Sbjct: 114 IDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT--SIALKVG 170

Query: 267 CMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTE 307
           C+Q IN ++   E+++FRVH++ E  RLGL   L +LR  E
Sbjct: 171 CLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE 211
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Length = 233 Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} PDB: 1z2c_B* Length = 383 Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} PDB: 1z2c_B* Length = 383 Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Length = 386 Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Length = 386 Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Length = 386 Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Length = 339 Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Length = 339 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 100.0
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 100.0
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 100.0
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 99.56
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 99.5
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 99.48
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 99.31
4dvg_B353 Diaphanous protein; cytoskeleton, armadillo repeat 97.04
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 94.25
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 90.29
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 90.0
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 89.27
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 86.46
4dvg_B353 Diaphanous protein; cytoskeleton, armadillo repeat 83.59
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 83.45
3grl_A 651 General vesicular transport factor P115; vesicle t 83.22
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 82.53
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Back     alignment and structure
Probab=100.00  E-value=2.8e-50  Score=419.78  Aligned_cols=278  Identities=24%  Similarity=0.360  Sum_probs=230.1

Q ss_pred             hhhhccccccccCCChhHHHHHhcccccchHHHHHHHHHHHHHHhhhhhhcccCCCccccccCCCcccCCCCCCCCCCCC
Q psy8949          47 EETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPAN  126 (493)
Q Consensus        47 t~~L~~LeisLRTn~i~WV~eFln~~n~Gl~~L~eyL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (493)
                      +++|++|+|+||||+++||++|.   ++|+++|+++|...+.          ++.                     +. +
T Consensus        23 ~~~L~~L~v~Lrt~~~~Wv~~F~---~~Gl~~Ll~~L~~~~~----------~~~---------------------~~-~   67 (386)
T 2bnx_A           23 LSCLESLRVSLNNNPVSWVQTFG---AEGLASLLDILKRLHD----------EKE---------------------ET-S   67 (386)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHH---HHHHHHHHHHHHHHHT----------CCT---------------------TT-C
T ss_pred             HHHHHHHhHHHhcCCcHHHHHHH---HhHHHHHHHHHHHHHh----------ccc---------------------cc-c
Confidence            67899999999999999999995   5899999999987641          000                     00 0


Q ss_pred             CCCCCCCCCCCCccccccChhhhhhhhhhhhccCCCCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCCh
Q psy8949         127 VISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSL  206 (493)
Q Consensus       127 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~  206 (493)
                                   .                    ....+.+|+||+|||||||+++|++.|+.||.++..|+.||+++++
T Consensus        68 -------------~--------------------~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~  114 (386)
T 2bnx_A           68 -------------G--------------------NYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP  114 (386)
T ss_dssp             -------------C--------------------TTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred             -------------c--------------------chhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence                         0                    0123678999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhcccC--c-hHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhh
Q psy8949         207 RTKALVLELLAAICLVTG--G-HEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNF  283 (493)
Q Consensus       207 ~tr~lVlELLaalCl~~~--G-h~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~  283 (493)
                      +||++|+|+|+++|++++  | |+.||+||++++. ++|+.||++||+++++  ...++|+++||+|||+||++++|+++
T Consensus       115 ~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~-~~e~~RF~~lv~~l~~--~~~~e~~~a~m~lIN~lv~~~~dl~~  191 (386)
T 2bnx_A          115 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDF  191 (386)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHHTST--TSCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH-hCchhhHHHHHHHHHc--CChHHHHHHHHHHHHHHHCCCCCHHH
Confidence            999999999999999986  9 9999999999987 5899999999999976  35899999999999999999999999


Q ss_pred             HHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH--HHHHHHHhhhhccccchhhhhhHHHHHhhchHHHHh
Q psy8949         284 RVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV--ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLD  361 (493)
Q Consensus       284 RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~--~~~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~  361 (493)
                      |+|||+||.++||.+++++||..+++.++.|++.|+..+...  ++.+.                         |..+--
T Consensus       192 R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~~fe~~~~eD~~el~~r-------------------------~~~i~~  246 (386)
T 2bnx_A          192 RVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR-------------------------LDDIRM  246 (386)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHH
T ss_pred             HHHHHHHHHHCChHHHHHHHhccCChhHHHHHHHHHHHHHHHHHHHHhh-------------------------hhcCCC
Confidence            999999999999999999999999999999999976644211  22111                         111100


Q ss_pred             hhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCCCcchhhhhhhhcC
Q psy8949         362 KLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLD  441 (493)
Q Consensus       362 ~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~~~~~lSiLqhll~  441 (493)
                      +                    +.+|.++                          ++.|..+++..++++||+|||||||.
T Consensus       247 d--------------------~~d~~~~--------------------------~~~l~~~~~~t~~~~~flSiLQhLLl  280 (386)
T 2bnx_A          247 E--------------------MDDFGEV--------------------------FQIILNTVKDSKAEPHFLSILQHLLL  280 (386)
T ss_dssp             H--------------------CCCHHHH--------------------------HHHHHHHHTTSTHHHHHHHHHHHHTT
T ss_pred             C--------------------CCCHHHH--------------------------HHHHHHHHcCCCchhHHHHHHHHHHh
Confidence            0                    1122222                          34556777788889999999999999


Q ss_pred             CCCCCCchhHHHHHHHhhHhHHHhh
Q psy8949         442 PKASRSSRVQISAYLDNVFDVAALM  466 (493)
Q Consensus       442 ~~~~~~~~~~~w~~ld~~v~~a~ll  466 (493)
                      ++.+.....++|.++|++|.+..+-
T Consensus       281 i~~d~~~~~~~~~Lid~~v~qivl~  305 (386)
T 2bnx_A          281 VRNDYEARPQYYKLIEECVSQIVLH  305 (386)
T ss_dssp             SCCCTTTHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHhc
Confidence            9987666689999999999999964
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 493
d2bnxa1343 a.118.1.23 (A:133-475) Diaphanous protein homolog 4e-35
d2bnxa1343 a.118.1.23 (A:133-475) Diaphanous protein homolog 4e-13
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 343 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (332), Expect = 4e-35
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 149 KKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSLRT 208
           K+        +      + H  I CL+A MNNK+G+  +++  E I  +  ++       
Sbjct: 55  KRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM 114

Query: 209 KALVLELLAAICLVT---GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMV 265
                +LL+A+C++      +E +L A     E   E +RF+ L+D   +     I   V
Sbjct: 115 MIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSGT--SIALKV 171

Query: 266 ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTE 307
            C+Q IN ++   E+++FRVH++ E  RLGL   L +LR  E
Sbjct: 172 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE 213
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 343 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query493
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 100.0
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 99.48
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.15
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 93.97
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 81.4
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-49  Score=401.41  Aligned_cols=281  Identities=24%  Similarity=0.362  Sum_probs=231.1

Q ss_pred             hhhhccccccccCCChhHHHHHhcccccchHHHHHHHHHHHHHHhhhhhhcccCCCccccccCCCcccCCCCCCCCCCCC
Q psy8949          47 EETLNTSSEKCDKPPYRWVKEFLNDDNHGLDSLIEYLSFRLVMMRHEYRIADSKHLSEETLNTSSETENGLPASTNPPAN  126 (493)
Q Consensus        47 t~~L~~LeisLRTn~i~WV~eFln~~n~Gl~~L~eyL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (493)
                      .+.|.+|+|+|||++++||++|.   ++|+++|+++|..++.          ++.                   .++   
T Consensus        21 ~~~L~sL~v~Lrt~~~sWv~~F~---~~G~~~L~~~L~~l~~----------~~~-------------------~~~---   65 (343)
T d2bnxa1          21 LSCLESLRVSLNNNPVSWVQTFG---AEGLASLLDILKRLHD----------EKE-------------------ETS---   65 (343)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHH---HHHHHHHHHHHHHHHT----------CCT-------------------TTC---
T ss_pred             HHHHHHHHHHHhcCCchHHHHHH---hccHHHHHHHHHHHHh----------hcc-------------------ccc---
Confidence            56799999999999999999992   6899999999988751          000                   000   


Q ss_pred             CCCCCCCCCCCCccccccChhhhhhhhhhhhccCCCCCcchHHHHHHHHHHhcchhhHHHHhcchhhHHHHHHhhcCCCh
Q psy8949         127 VISPQSLGHQRPSLDLASSPSVKKRSRHAARLNMGDPKDDIHVCILCLRAIMNNKYGLNMVIKHTEAINSIALSLMHKSL  206 (493)
Q Consensus       127 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~m~~~~dd~~~cI~CLkAIMN~~~Gl~~vl~~~~~i~~Ia~sL~s~~~  206 (493)
                              .                         ....+.+|+||+|||||||+++|++.++.||.++..|+.||.|+++
T Consensus        66 --------~-------------------------~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~  112 (343)
T d2bnxa1          66 --------G-------------------------NYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP  112 (343)
T ss_dssp             --------C-------------------------TTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred             --------c-------------------------cccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCch
Confidence                    0                         0012468999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccc---CchHHHHHHHHhhHhhccCCcchHHHHhHhhccccccHHHHHHHHHHhhHHhcCCCChhh
Q psy8949         207 RTKALVLELLAAICLVT---GGHEIILAAFDNFKEICQESKRFETLMDYFMNYEVFHIEFMVACMQFINIVVHSVEDMNF  283 (493)
Q Consensus       207 ~tr~lVlELLaalCl~~---~Gh~~VL~A~d~~k~~~~E~~RF~~Lv~~l~~~e~~~~ey~~a~m~fIN~lV~s~eDl~~  283 (493)
                      +||++|+|+|+++|.|+   +||+.||+||++++. ++++.||++||+.+.+.  .+++|+++||+|||+||++++|+++
T Consensus       113 ~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~-~~e~~RF~~lv~~l~~~--~~~ey~~a~m~lIN~li~~~~dl~~  189 (343)
T d2bnxa1         113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE-MDEVERFQPLLDGLKSG--TSIALKVGCLQLINALITPAEELDF  189 (343)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH-HHTSCTTHHHHHHTSTT--SCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH-hcCCCcHHHHHHHHhcc--ccHHHHHHHHHHHHHHHcCcccHHH
Confidence            99999999999999985   699999999999887 67999999999999874  4789999999999999999999999


Q ss_pred             HHHHHHHHHHCCChHHHHhhhhhhhhhhhhHHHhhhhhhhHH--HHHHHHHhhhhccccchhhhhhHHHHHhhchHHHHh
Q psy8949         284 RVHLQYEFSRLGLDSYLDKLRHTETLLLHCYLLCLYFYRVQV--ACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLD  361 (493)
Q Consensus       284 RVhLR~Ef~~lGL~~iL~kLr~~e~~~lq~qi~~~~~~e~~~--~~~~~~~al~~~~~d~d~r~~~r~~~~~~~~~~~v~  361 (493)
                      |+|||+||.++||.+++++|+..+++.++.|+++|+.++...  ++.+.                         |++.--
T Consensus       190 R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~~f~~~~~~D~~el~~~-------------------------~~~~~~  244 (343)
T d2bnxa1         190 RVHIRSELMRLGLHQVLQELREIENEDMKVQLCVFDEQGDEDFFDLKGR-------------------------LDDIRM  244 (343)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHH
T ss_pred             HHHHHHHHHHCChHHHHHHHHccCChHHHHHHHHHHHHHHhHHHHHHhc-------------------------cccccc
Confidence            999999999999999999999999999999999986543221  22111                         111111


Q ss_pred             hhhcccchhHHHHHHHhhhhhccCccccchhhhhHHHHhhcCchHHHhhhccCCcHHHHHhhhccCCCcchhhhhhhhcC
Q psy8949         362 KLRHTESEELQVACMQFINIVVHSVEDMNFRVHLQYEFSRLGLDSYLDKLRHTESEELQERVQAKDPPAHYLSKLRTYLD  441 (493)
Q Consensus       362 ~L~~~~n~~~~v~~m~fiN~li~~~~dl~~R~hLr~Ef~~lgl~~~l~~lr~~e~~~L~~ql~~fd~~~~~lSiLqhll~  441 (493)
                      ++                    .+|.++                          ...|..+++.+++++||+|||||||.
T Consensus       245 d~--------------------~~~~~~--------------------------~~~l~~~~~~t~~e~~flSilQhLll  278 (343)
T d2bnxa1         245 EM--------------------DDFGEV--------------------------FQIILNTVKDSKAEPHFLSILQHLLL  278 (343)
T ss_dssp             HC--------------------CCHHHH--------------------------HHHHHHHHTTSTHHHHHHHHHHHHTT
T ss_pred             cc--------------------CCHHHH--------------------------HHHHHHHhcCCccHHHHHHHHHHHHc
Confidence            11                    011111                          34566778888889999999999999


Q ss_pred             CCCCCCchhHHHHHHHhhHhHHHhhccc
Q psy8949         442 PKASRSSRVQISAYLDNVFDVAALMEDS  469 (493)
Q Consensus       442 ~~~~~~~~~~~w~~ld~~v~~a~lle~~  469 (493)
                      ++.+...+.++|.++|.+|++++|..+.
T Consensus       279 ~~~~~~~~~~~~~Lid~~v~~i~l~~~~  306 (343)
T d2bnxa1         279 VRNDYEARPQYYKLIEECVSQIVLHKNG  306 (343)
T ss_dssp             SCCCTTTHHHHHHHHHHHHHHHHTCGGG
T ss_pred             CCcCcchHHHHHHHHHHHHHHHHHhhcC
Confidence            9988777789999999999999875543
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure