Psyllid ID: psy895

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MTLLSFLKDKEIEKKGGKRLRKITLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
ccEEccccEEEEEEcccEEEEEEEEcccccEEEEEccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccHHHccccHHHHHcccccccccccccEEEEEcccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHc
ccHHHHccHHHHHHccccHEEEEEEEEEccccHEEccccHHHccccccccccHcccccccccccccEEEEEEccccccccccccccccccEEEEEEccHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccHHHEEEEEccccHHHHHHHccccccEEEccccHHHHHHccccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHcc
MTLLSFLKDKEIEKKGGKRLRKITLVIRTRSIYcyecdswkdrrcldpfnysvlpihqpalnpcngccvkmvrnsktefESVRRTCTSKLDISLFMVDHVcmyegsgrghmcfcesdrpmiemvlpssldntlsppghhvcllftqftpyklagdrdwteedkanyatNVFSSIeqycpgftqdivgyeiltppdlekefgltggniFHGALSLNQllfnrplpiqgpsspftliphlllcgsgahpgggvcgapgYIAAQMVNRLMRK
mtllsflkdkeiekkggkrlrkitlvirtrsiycyecdswkdrrCLDPFNYSVLPIHQPALNPCNGCCVKMVRNsktefesvrrtctskldislFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
MTLLSFLKDKEIEKKGGKRLRKITLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
*****************KRLRKITLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMV******
****SFLKDKEIEKKGGKRLRKITLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLM**
MTLLSFLKDKEIEKKGGKRLRKITLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
*TLLSFLKDKEIEKKGGKRLRKITLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTLLSFLKDKEIEKKGGKRLRKITLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEFESVRRTCTSKLDISLFMVDHVCMYEGSGRGHMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query269 2.2.26 [Sep-21-2011]
Q3MHH6581 Pyridine nucleotide-disul yes N/A 0.561 0.259 0.588 8e-44
Q3U4I7580 Pyridine nucleotide-disul yes N/A 0.561 0.260 0.568 2e-42
Q68FT3581 Pyridine nucleotide-disul yes N/A 0.561 0.259 0.575 3e-42
Q8N2H3581 Pyridine nucleotide-disul yes N/A 0.557 0.258 0.564 2e-41
Q5RAP5581 Pyridine nucleotide-disul yes N/A 0.557 0.258 0.551 3e-40
B4GAN3160 Protein quiver OS=Drosoph N/A N/A 0.408 0.687 0.610 1e-34
B4MQJ1161 Protein quiver OS=Drosoph N/A N/A 0.334 0.559 0.711 2e-34
B4J8Z9161 Protein quiver OS=Drosoph N/A N/A 0.334 0.559 0.711 2e-34
B4LQ44159 Protein quiver OS=Drosoph N/A N/A 0.334 0.566 0.711 2e-34
B4P641158 Protein quiver OS=Drosoph N/A N/A 0.334 0.569 0.711 4e-34
>sp|Q3MHH6|PYRD2_BOVIN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Bos taurus GN=PYROXD2 PE=2 SV=1 Back     alignment and function desciption
 Score =  177 bits (449), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 90/153 (58%), Positives = 109/153 (71%), Gaps = 2/153 (1%)

Query: 116 SDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIE 175
           S RP+IE+ +PSSLD TL+PPG HV  LFTQ+TPY LAG + W E+ +  YA  VF  IE
Sbjct: 429 SKRPLIELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKAWDEQQRNTYADRVFDCIE 488

Query: 176 QYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI 235
            Y PGF   +VG +ILTPPDLE+ FGL GGNIFH A+SL+QL F RP+P+   SS  + +
Sbjct: 489 AYAPGFKGSVVGRDILTPPDLERVFGLPGGNIFHCAMSLDQLYFARPVPLH--SSYCSPL 546

Query: 236 PHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR 268
             L LCGSGAHPGGGV GA G  AA +V R +R
Sbjct: 547 RGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLR 579
Probable oxidoreductase.
Bos taurus (taxid: 9913)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -
>sp|Q3U4I7|PYRD2_MOUSE Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Mus musculus GN=Pyroxd2 PE=2 SV=2 Back     alignment and function description
>sp|Q68FT3|PYRD2_RAT Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Rattus norvegicus GN=Pyroxd2 PE=2 SV=1 Back     alignment and function description
>sp|Q8N2H3|PYRD2_HUMAN Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Homo sapiens GN=PYROXD2 PE=2 SV=2 Back     alignment and function description
>sp|Q5RAP5|PYRD2_PONAB Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 OS=Pongo abelii GN=PYROXD2 PE=2 SV=1 Back     alignment and function description
>sp|B4GAN3|QVR_DROPE Protein quiver OS=Drosophila persimilis GN=qvr PE=3 SV=2 Back     alignment and function description
>sp|B4MQJ1|QVR_DROWI Protein quiver OS=Drosophila willistoni GN=qvr PE=3 SV=2 Back     alignment and function description
>sp|B4J8Z9|QVR_DROGR Protein quiver OS=Drosophila grimshawi GN=qvr PE=3 SV=2 Back     alignment and function description
>sp|B4LQ44|QVR_DROVI Protein quiver OS=Drosophila virilis GN=qvr PE=3 SV=2 Back     alignment and function description
>sp|B4P641|QVR_DROYA Protein quiver OS=Drosophila yakuba GN=qvr PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
213514352 577 Probable oxidoreductase C10orf33 [Salmo 0.527 0.246 0.643 2e-46
443693037 593 hypothetical protein CAPTEDRAFT_178680 [ 0.542 0.246 0.587 1e-44
443684431 591 hypothetical protein CAPTEDRAFT_153668 [ 0.565 0.257 0.564 9e-44
344274867 581 PREDICTED: pyridine nucleotide-disulfide 0.609 0.282 0.560 1e-43
390353930 590 PREDICTED: pyridine nucleotide-disulfide 0.550 0.250 0.626 2e-43
321475385 546 putative oxidoreductase [Daphnia pulex] 0.539 0.265 0.581 6e-43
118092902 593 PREDICTED: pyridine nucleotide-disulfide 0.609 0.276 0.540 1e-42
326923820 501 PREDICTED: pyridine nucleotide-disulfide 0.598 0.321 0.550 2e-42
296472691 581 TPA: pyridine nucleotide-disulfide oxido 0.561 0.259 0.588 4e-42
77736011 581 pyridine nucleotide-disulfide oxidoreduc 0.561 0.259 0.588 4e-42
>gi|213514352|ref|NP_001135210.1| Probable oxidoreductase C10orf33 [Salmo salar] gi|209154186|gb|ACI33325.1| Probable oxidoreductase C10orf33 [Salmo salar] Back     alignment and taxonomy information
 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 110/146 (75%), Gaps = 4/146 (2%)

Query: 116 SDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIE 175
           S RPMIEM +PS LD TL+PPG HV LLFTQFTPY L G R WT++D+  +A +VFS IE
Sbjct: 425 SSRPMIEMTIPSVLDPTLAPPGSHVVLLFTQFTPYSLVGGRAWTDQDREAFADSVFSWIE 484

Query: 176 QYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLP-IQGPSSPFTL 234
           QY PGF   IVG ++LTPPDLE+ FGLTGGNIFHGA+SL+QL   RPLP +    SP   
Sbjct: 485 QYAPGFKSSIVGKDVLTPPDLERIFGLTGGNIFHGAMSLDQLYLARPLPSLSDYRSP--- 541

Query: 235 IPHLLLCGSGAHPGGGVCGAPGYIAA 260
           I  L LCGSG+HPGGGV G+PG+ AA
Sbjct: 542 IKGLYLCGSGSHPGGGVMGSPGWNAA 567

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota
>gi|443693037|gb|ELT94497.1| hypothetical protein CAPTEDRAFT_178680 [Capitella teleta] Back     alignment and taxonomy information
>gi|443684431|gb|ELT88359.1| hypothetical protein CAPTEDRAFT_153668 [Capitella teleta] Back     alignment and taxonomy information
>gi|344274867|ref|XP_003409236.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Loxodonta africana] Back     alignment and taxonomy information
>gi|390353930|ref|XP_792338.2| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|321475385|gb|EFX86348.1| putative oxidoreductase [Daphnia pulex] Back     alignment and taxonomy information
>gi|118092902|ref|XP_423118.2| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Gallus gallus] Back     alignment and taxonomy information
>gi|326923820|ref|XP_003208131.1| PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|296472691|tpg|DAA14806.1| TPA: pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Bos taurus] Back     alignment and taxonomy information
>gi|77736011|ref|NP_001029704.1| pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 [Bos taurus] gi|109820907|sp|Q3MHH6.1|PYRD2_BOVIN RecName: Full=Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2 gi|75773677|gb|AAI05236.1| Chromosome 10 open reading frame 33 ortholog [Bos taurus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query269
UNIPROTKB|Q3MHH6581 PYROXD2 "Pyridine nucleotide-d 0.561 0.259 0.588 1.9e-42
ZFIN|ZDB-GENE-050506-147571 pyroxd2 "pyridine nucleotide-d 0.539 0.253 0.597 1.4e-41
MGI|MGI:1921830580 Pyroxd2 "pyridine nucleotide-d 0.550 0.255 0.58 4.6e-41
RGD|1303232581 Pyroxd2 "pyridine nucleotide-d 0.550 0.254 0.586 9.6e-41
UNIPROTKB|Q8N2H3581 PYROXD2 "Pyridine nucleotide-d 0.546 0.253 0.576 1.2e-40
WB|WBGene00018146544 F37C4.6 [Caenorhabditis elegan 0.524 0.259 0.564 4.8e-39
TAIR|locus:505006683556 AT5G49555 [Arabidopsis thalian 0.539 0.260 0.543 9.9e-39
UNIPROTKB|B4GAN3160 qvr "Protein quiver" [Drosophi 0.408 0.687 0.610 5.1e-35
UNIPROTKB|B4J8Z9161 qvr "Protein quiver" [Drosophi 0.334 0.559 0.711 8.3e-35
UNIPROTKB|B4LQ44159 qvr "Protein quiver" [Drosophi 0.334 0.566 0.711 8.3e-35
UNIPROTKB|Q3MHH6 PYROXD2 "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 90/153 (58%), Positives = 109/153 (71%)

Query:   116 SDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIE 175
             S RP+IE+ +PSSLD TL+PPG HV  LFTQ+TPY LAG + W E+ +  YA  VF  IE
Sbjct:   429 SKRPLIELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKAWDEQQRNTYADRVFDCIE 488

Query:   176 QYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLI 235
              Y PGF   +VG +ILTPPDLE+ FGL GGNIFH A+SL+QL F RP+P+   SS  + +
Sbjct:   489 AYAPGFKGSVVGRDILTPPDLERVFGLPGGNIFHCAMSLDQLYFARPVPLH--SSYCSPL 546

Query:   236 PHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMR 268
               L LCGSGAHPGGGV GA G  AA +V R +R
Sbjct:   547 RGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLR 579
GO:0016491 "oxidoreductase activity" evidence=IEA
ZFIN|ZDB-GENE-050506-147 pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1921830 Pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1303232 Pyroxd2 "pyridine nucleotide-disulphide oxidoreductase domain 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N2H3 PYROXD2 "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00018146 F37C4.6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:505006683 AT5G49555 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B4GAN3 qvr "Protein quiver" [Drosophila persimilis (taxid:7234)] Back     alignment and assigned GO terms
UNIPROTKB|B4J8Z9 qvr "Protein quiver" [Drosophila grimshawi (taxid:7222)] Back     alignment and assigned GO terms
UNIPROTKB|B4LQ44 qvr "Protein quiver" [Drosophila virilis (taxid:7244)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5A5T4QVR_DROMENo assigned EC number0.71110.33450.5696yesN/A
B5E022QVR_DROPSNo assigned EC number0.61010.40520.6855yesN/A
Q68FT3PYRD2_RAT1, ., -, ., -, ., -0.57510.56130.2598yesN/A
Q3U4I7PYRD2_MOUSE1, ., -, ., -, ., -0.56860.56130.2603yesN/A
Q5RAP5PYRD2_PONAB1, ., -, ., -, ., -0.55190.55760.2581yesN/A
Q3MHH6PYRD2_BOVIN1, ., -, ., -, ., -0.58820.56130.2598yesN/A
Q8N2H3PYRD2_HUMAN1, ., -, ., -, ., -0.56490.55760.2581yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
COG1233487 COG1233, COG1233, Phytoene dehydrogenase and relat 2e-31
TIGR02734502 TIGR02734, crtI_fam, phytoene desaturase 2e-09
TIGR02730493 TIGR02730, carot_isom, carotene isomerase 0.003
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information 
 Score =  121 bits (304), Expect = 2e-31
 Identities = 57/167 (34%), Positives = 77/167 (46%), Gaps = 17/167 (10%)

Query: 107 GRGHMCFCESDR----PMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEED 162
            R  +     DR    P + + +PS  D +L+P G H       F            +E 
Sbjct: 329 TREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHST-----FAQLVPVPSLGDYDEL 383

Query: 163 KANYATNVFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRP 222
           K + A  +  ++E+  PG    IV  E+LTP DLE+  GL GG+IF GA +L+QL   RP
Sbjct: 384 KESLADAI-DALEELAPGLRDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRP 442

Query: 223 LPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGAPGYIAAQMVNRLMRK 269
            P        T I  L L G+  HPGGGV G PG  AA +   +   
Sbjct: 443 PP------KSTPIKGLYLVGASTHPGGGVPGVPGS-AAAVALLIDLD 482

Length = 487
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase Back     alignment and domain information
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 269
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 100.0
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 100.0
TIGR02730493 carot_isom carotene isomerase. Members of this fam 100.0
KOG4254|consensus561 100.0
COG1233487 Phytoene dehydrogenase and related proteins [Secon 99.96
PLN02612567 phytoene desaturase 99.61
PRK07233434 hypothetical protein; Provisional 99.38
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 99.17
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 99.07
PLN02487569 zeta-carotene desaturase 99.01
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 98.98
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 98.93
PRK11883451 protoporphyrinogen oxidase; Reviewed 98.76
PRK07208479 hypothetical protein; Provisional 98.31
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 98.3
PRK12416463 protoporphyrinogen oxidase; Provisional 97.85
PLN02576496 protoporphyrinogen oxidase 97.55
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 97.41
PLN02268435 probable polyamine oxidase 96.81
PLN02676487 polyamine oxidase 96.42
PLN02568539 polyamine oxidase 95.71
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 94.59
PLN02529 738 lysine-specific histone demethylase 1 94.43
PLN02976 1713 amine oxidase 93.96
COG3349485 Uncharacterized conserved protein [Function unknow 93.69
PLN02328 808 lysine-specific histone demethylase 1 homolog 93.11
PLN03000 881 amine oxidase 91.41
PTZ00363443 rab-GDP dissociation inhibitor; Provisional 88.37
COG1231450 Monoamine oxidase [Amino acid transport and metabo 86.74
COG0445 621 GidA Flavin-dependent tRNA uridine 5-carboxymethyl 86.22
COG2509486 Uncharacterized FAD-dependent dehydrogenases [Gene 82.88
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information 
Probab=100.00  E-value=4.8e-41  Score=324.07  Aligned_cols=249  Identities=20%  Similarity=0.287  Sum_probs=212.7

Q ss_pred             hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895            3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF   79 (269)
Q Consensus         3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~   79 (269)
                      .|++.|.+.++++||+|+.++   +++.++.++..|++++++.+.++. +|+++.+     ..+    ..+|++.+..++
T Consensus       220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~-VI~a~~~-----~~~----~~~l~~~~~~~~  289 (502)
T TIGR02734       220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADA-VVSNADL-----HHT----YRRLLPNHPRRR  289 (502)
T ss_pred             HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCE-EEECCcH-----HHH----HHHhcCcccccc
Confidence            467899999999999999985   666677788899999998899999 9999776     233    124677666666


Q ss_pred             hhhhhhccCCCCCceEEEEe--e---cccCCCCCcceEee---------------eCCCCeEEEEcCCCCCCCCCCCCee
Q psy895           80 ESVRRTCTSKLDISLFMVDH--V---CMYEGSGRGHMCFC---------------ESDRPMIEMVLPSSLDNTLSPPGHH  139 (269)
Q Consensus        80 ~~~~r~~~~~~s~s~f~vyl--~---~~~~~~~~~~i~~~---------------~~~~p~~~v~~ps~~Dp~~AP~G~~  139 (269)
                      .+.+++++++.+.|+|++|+  +   ..++++.||++++.               +|++|++|+++|+..||++||+|++
T Consensus       290 ~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~  369 (502)
T TIGR02734       290 YPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCE  369 (502)
T ss_pred             ccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCc
Confidence            66778889999999999999  4   46777777776541               3567899999999999999999999


Q ss_pred             EEEEEEecccccCCCCCCCcHHHHHHHHHHHHHHHHHH-CCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccc
Q psy895          140 VCLLFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQY-CPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLL  218 (269)
Q Consensus       140 ~l~i~~~~~p~~~~~g~~w~~~~K~~~a~~il~~le~~-~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~  218 (269)
                      +++++++ +|++-.++.+|+ +.|+++++++|+.||++ +|+|+++|+..+++||+||++|+|+++|++||++++..|..
T Consensus       370 ~~~~~~~-~~~~~~~~~~~~-~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~  447 (502)
T TIGR02734       370 NLYVLAP-VPHLGTADVDWS-VEGPRYRDRILAYLEERAIPGLRDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSA  447 (502)
T ss_pred             cEEEEEe-CCCCCCCCCCcH-HHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcc
Confidence            9999998 887512234797 57999999999999998 99999999999999999999999999999999999999988


Q ss_pred             cCCCCCCCCCCCCCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhcC
Q psy895          219 FNRPLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMRK  269 (269)
Q Consensus       219 ~~rp~~~~~~~~~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~~  269 (269)
                      .+||.      ..+|+|+||||||||+|||+||+|+  ||++||++|++++++
T Consensus       448 ~~rp~------~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~  494 (502)
T TIGR02734       448 WFRPH------NRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAP  494 (502)
T ss_pred             cCCCC------CCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence            88983      3578999999999999999999995  999999999998763

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>KOG4254|consensus Back     alignment and domain information
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>COG3349 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PTZ00363 rab-GDP dissociation inhibitor; Provisional Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
4dgk_A501 Crystal Structure Of Phytoene Desaturase Crti From 1e-05
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea Ananatis Length = 501 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 13/138 (9%)
Query: 126 PSSLDNTLSPPGHHVCLLFTQFTPYKLAG--DRDWTEEDKANYATNVFSSIEQ-YCPGFT 182
           P   D++L+P G   C  +    P    G  + DWT E        +F+ +EQ Y PG  
Sbjct: 355 PCVTDSSLAPEG---CGSYYVLAPVPHLGTANLDWTVEGP-KLRDRIFAYLEQHYMPGLR 410
Query: 183 QDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPSSPFTLIPHLLLCG 242
             +V + + TP D   +     G+ F     L Q  + RP       +    I +L L G
Sbjct: 411 SQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFRP------HNRDKTITNLYLVG 464
Query: 243 SGAHPGGGVCGAPGYIAA 260
           +G HPG G+ G  G   A
Sbjct: 465 AGTHPGAGIPGVIGSAKA 482

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query269
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 3e-12
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 6e-06
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425 Back     alignment and structure
 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 34/160 (21%)

Query: 110 HMCFCESDRPMIEMVLPSSLDNTLSPPGHHVCLLFTQFTPYKLAGDRDWTEEDKANYATN 169
            +      R +  +   +  D  L+PPG H+ +      P           ++  +    
Sbjct: 297 GVLLTPYTRRINGVNEVTQADPELAPPGKHLTMCHQYVAP--------ENVKNLESEIEM 348

Query: 170 VFSSIEQYCPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNRPLPIQGPS 229
               +++  PG       YE+L               +   A          P    G  
Sbjct: 349 GLEDLKEIFPGKR-----YEVLLIQSYH-----DEWPVNRAA------SGTDP----GNE 388

Query: 230 SPFTLIPHLLLCGSGAHPGGGVCGAPGYI--AAQMVNRLM 267
           +P      L + G GA   GG+    G       ++ +++
Sbjct: 389 TP---FSGLYVVGDGAKGKGGI-EVEGVALGVMSVMEKVL 424
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 100.0
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 99.79
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 99.63
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 99.16
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 99.12
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 99.1
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 99.1
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 99.02
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 98.87
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 98.72
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 98.65
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 98.52
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 98.51
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 98.29
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 98.21
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 97.98
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 97.95
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 97.07
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 96.88
4gde_A513 UDP-galactopyranose mutase; flavin adenine dinucle 96.86
1vg0_A650 RAB proteins geranylgeranyltransferase component A 96.76
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 96.61
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 96.22
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 93.18
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 92.83
1rsg_A516 FMS1 protein; FAD binding motif, oxidoreductase; H 92.61
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 92.58
3ayj_A721 Pro-enzyme of L-phenylalanine oxidase; amino acid 92.22
3p1w_A475 Rabgdi protein; GDI RAB, malaria, structural genom 87.28
2e1m_C181 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 86.13
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
Probab=100.00  E-value=2.1e-43  Score=336.51  Aligned_cols=248  Identities=19%  Similarity=0.274  Sum_probs=167.4

Q ss_pred             hhhhhhHHHHHHhcCeeeeee---eeeeeceeeEEEecCCCccCccCCCCCCCCCCCCCCCcccccccccccccCcccch
Q psy895            3 LLSFLKDKEIEKKGGKRLRKI---TLVIRTRSIYCYECDSWKDRRCLDPFNYSVLPIHQPALNPCNGCCVKMVRNSKTEF   79 (269)
Q Consensus         3 ~~~~~~~~~i~~~gg~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~fi~~~~p~~~~~~~~~~~~~~~Ll~~~~~~~   79 (269)
                      -|.+.|.+.|+++||+|..++   +|+.++.+++.|++++++.+.|+. +|+++.|     ..+    ..+|+++...+.
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~-VV~~a~~-----~~~----~~~Ll~~~~~~~  291 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQA-VASNADV-----VHT----YRDLLSQHPAAV  291 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSC-EEECCC-------------------------
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCE-EEECCCH-----HHH----HHHhccccccch
Confidence            477899999999999999885   888999999999999999999999 9999888     344    235778777777


Q ss_pred             hhhhhhccCCCCCceEEEEe--ecccCCCCCcceEee---------------eCCCCeEEEEcCCCCCCCCCCCCeeEEE
Q psy895           80 ESVRRTCTSKLDISLFMVDH--VCMYEGSGRGHMCFC---------------ESDRPMIEMVLPSSLDNTLSPPGHHVCL  142 (269)
Q Consensus        80 ~~~~r~~~~~~s~s~f~vyl--~~~~~~~~~~~i~~~---------------~~~~p~~~v~~ps~~Dp~~AP~G~~~l~  142 (269)
                      .+.+++++.+.+.|+|++|+  +...+.+.||++++.               ++++|.+++++|+..||++||+|+++++
T Consensus       292 ~~~~~~~~~~~~~s~~~~~~~l~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~dp~~ap~G~~~~~  371 (501)
T 4dgk_A          292 KQSNKLQTKRMSNSLFVLYFGLNHHHDQLAHHTVCFGPRYRELIDEIFNHDGLAEDFSLYLHAPCVTDSSLAPEGCGSYY  371 (501)
T ss_dssp             -----------CCEEEEEEEEESSCCTTSCSEEEEEECC-------------CCCEEEEEEECGGGTCGGGSSTTCEEEE
T ss_pred             hhhhhhhccccCCceeEEEecccCCccccccceeccccchhhhccccccccccccCCceecccCCCCCCCcCCCCCceEE
Confidence            78889999999999999999  777778888887642               3567889999999999999999999999


Q ss_pred             EEEecccccCCCCCCCcHHHHHHHHHHHHHHHHHH-CCCCCcceEEEEecChhHHHHhhCCCCCccccccccccccccCC
Q psy895          143 LFTQFTPYKLAGDRDWTEEDKANYATNVFSSIEQY-CPGFTQDIVGYEILTPPDLEKEFGLTGGNIFHGALSLNQLLFNR  221 (269)
Q Consensus       143 i~~~~~p~~~~~g~~w~~~~K~~~a~~il~~le~~-~P~i~~~I~~~~~~TP~t~~~y~~~~~GsiyG~~~~~~q~~~~r  221 (269)
                      ++++ +|+....+.+|+ +.|+++++++++.||++ +|+|+++|+..++.||+||++|++.++|++||++++..|..++|
T Consensus       372 ~~~~-~p~~~~~~~~~~-~~~~~~~~~vl~~l~~~~~P~~~~~i~~~~~~tP~~~~~~~~~~~G~~~g~~~~~~q~~~~R  449 (501)
T 4dgk_A          372 VLAP-VPHLGTANLDWT-VEGPKLRDRIFAYLEQHYMPGLRSQLVTHRMFTPFDFRDQLNAYHGSAFSVEPVLTQSAWFR  449 (501)
T ss_dssp             EEEE-ECCTTTSCCCHH-HHHHHHHHHHHHHHHHHTCTTHHHHEEEEEEECTTTTC------------------------
T ss_pred             EEEe-cCccccccccHH-HHHHHHHHHHHHHHHHhhCCChHHceEEEEECCHHHHHHHcCCCCccccChhcchhhccccC
Confidence            9998 888645566787 68999999999999986 59999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCcEEEcCCCCCCCCCccch--HHHHHHHHHHHHhc
Q psy895          222 PLPIQGPSSPFTLIPHLLLCGSGAHPGGGVCGA--PGYIAAQMVNRLMR  268 (269)
Q Consensus       222 p~~~~~~~~~~t~i~nLyl~G~~~~pG~Gv~gv--sg~~~a~~il~~~~  268 (269)
                      |.      ...|||+|||||||+++||+||+|+  ||++||++||+|+.
T Consensus       450 P~------~~~t~i~gLyl~G~~t~pG~Gv~ga~~SG~~aA~~il~dL~  492 (501)
T 4dgk_A          450 PH------NRDKTITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLEDLI  492 (501)
T ss_dssp             ------------CCTTEEECCCH------HHHHHHHHHHHHHHHHHHHC
T ss_pred             CC------CCCCCCCCEEEECCCCCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            82      3468999999999999999999995  99999999999985
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Back     alignment and structure
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Back     alignment and structure
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Back     alignment and structure
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query269
d2dw4a2449 Lysine-specific histone demethylase 1, LSD1 {Human 97.23
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 91.92
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 91.56
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 90.56
d1aoga2117 Trypanothione reductase {Trypanosoma cruzi [TaxId: 81.66
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 81.15
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 80.23
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=5.3e-05  Score=62.93  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             CCCCCCCcEEEcCCCCCCCC--Cccch--HHHHHHHHHHHHh
Q psy895          230 SPFTLIPHLLLCGSGAHPGG--GVCGA--PGYIAAQMVNRLM  267 (269)
Q Consensus       230 ~~~t~i~nLyl~G~~~~pG~--Gv~gv--sg~~~a~~il~~~  267 (269)
                      ..+++++||||||+++++++  ++.|+  ||+.||++|++++
T Consensus       406 ~~~~~~~~l~fAGe~t~~~~~g~~~GA~~SG~~aA~~Il~~~  447 (449)
T d2dw4a2         406 GAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF  447 (449)
T ss_dssp             ----CCCCEEECSGGGCTTSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCCEEEEcCCcCCCCceehHHHHHHHHHHHHHHHHHh
Confidence            67889999999999998764  36673  9999999999886
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure