Psyllid ID: psy904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
Protein Sequence
MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMRWFPCYWTGRPMWSIEPSQCLTIANN
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcHHHHHHHHHHccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccccEEEEEEEcccccccccccccHHHHHHHcccccEEEEEccccccccccccccccccccccccccEEEHHHccccccccccccccccccccccccccHHccccHHHHccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccEEcccc
Coil and Loop (DISEMBL)
mdvdsetesnhdTALTLACAGGHEELVELLLSRgadiehrdkkgftpLILAATAGHDKVVDILLNHKAdmeaqsertkdtplslacsggRYEVVELLLTrgankehrnvsdytplslaasGGYVNIIKLLLTHGaeinsrtgsklgiSPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRaktgltplmeaasggyVEVGRVLLdkgadvnappvpssrdtaLTIAADKGHCRFVELLLSkgaqvevknkkgnsplwlaanggHLSVVELLCKhgadidsqdnrKVSCLMAAFRKGHVKAVRWMVNHvaqfpsdqeMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEgemmeeeteendmhssgggrgegeegdsgidansqascssnevktaapnsrrkdkkkkkldmrwfpcywtgrpmwsiepsqcltiann
Flexible Loop (DISEMBL)
mdvdsetesnhdtALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADmeaqsertkdtplslacsGGRYEVVELLLTrgankehrnvsdytplsLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRaktgltplmeaasGGYVEVGRVLLDKGadvnappvpssRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVaqfpsdqemtRYIQTVNDKELLDKCQECSMVIRVaknqqaerankNANIlleeldmekwREESKRAAqarkrerkkqkklekkeekrkameeeeevirvaknqqaeranknanilleeldmekwREESKRAAqarkrerkkqkklekkeekrkameeeeeeeeevevqevegemmeeeteendmhssggGRGEGEEGDSGIDAnsqascssnevktaapnsrrkdkkkkkldmrwfpcywtgrpmwsiepsqcltiann
Low Complexity Region (SEG)
MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWreeskraaqarkrerkkqkklekkeekrkameeeeevirvakNQQAERANKNANILLEELDMEKWreeskraaqarkrerkkqkklekkeekrkameeeeeeeeevevqevegemmeeeteeNDMHssgggrgegeegdsgIDANSQASCSSNEVKTAAPNSRRkdkkkkkLDMRWFPCYWTGRPMWSIEPSQCLTIANN
Disordered region (IsUnstruct)
*************ALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH****************SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV**********TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVA********************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA********************************************************************************************************PCYWTGRPMWSIEPSQCLTIA**
Disordered Region (DISEMBL)
************TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM************SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKW*************************************IRVAKNQQAERANKNANILLEELDMEKW**********************************************************************************************************LDMRWFPCYWTGRPMWSIEPSQCLTIANN
Disordered Region (DISPRO)
*****ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKR*********************RKAMEEEEEEE*************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMRWFPCYWTGRPMWSIEPSQCLTIANN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	596	2.2.26 [Sep-21-2011]
Q9VCA8	4001	Ankyrin repeat and KH dom	yes	N/A	0.609	0.090	0.86	0.0
Q8IWZ3	2542	Ankyrin repeat and KH dom	yes	N/A	0.498	0.116	0.790	0.0
O75179	2603	Ankyrin repeat domain-con	no	N/A	0.568	0.130	0.815	0.0
Q99NH0	2603	Ankyrin repeat domain-con	no	N/A	0.484	0.111	0.815	0.0
Q21920	2620	Ankyrin repeat and KH dom	no	N/A	0.518	0.117	0.662	1e-144
Q60J38	2636	Ankyrin repeat and KH dom	N/A	N/A	0.664	0.150	0.615	1e-142
Q9ULJ7	1429	Ankyrin repeat domain-con	no	N/A	0.553	0.230	0.350	8e-43
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	N/A	0.541	0.073	0.332	5e-41
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	N/A	0.541	0.164	0.340	2e-40
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.548	0.083	0.352	4e-40

>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2

 Score =  729 bits (1881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/400 (86%), Positives = 375/400 (93%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            +++DSETESNHDTALTLACAGGHEELVELL++RGA+IEHRDKKGFTPLILAATAGHDKVV
Sbjct: 2303 IEIDSETESNHDTALTLACAGGHEELVELLINRGANIEHRDKKGFTPLILAATAGHDKVV 2362

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            DILL H A++EAQSERTKDTPLSLACSGGRYEVVELLL+ GANKEHRNVSDYTPLSLAAS
Sbjct: 2363 DILLKHSAELEAQSERTKDTPLSLACSGGRYEVVELLLSVGANKEHRNVSDYTPLSLAAS 2422

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGHT AVKLLLD GSDINAQIETNR
Sbjct: 2423 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHTPAVKLLLDQGSDINAQIETNR 2482

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDR+ANVEHRAKTGLTPLMEAASGGY+EVGRVLLDKGADVN
Sbjct: 2483 NTALTLACFQGRHEVVSLLLDRRANVEHRAKTGLTPLMEAASGGYIEVGRVLLDKGADVN 2542

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVP+SRDTALTIAADKGH +FVELLLS+ A VEVKNKKGNSPLWLAA+GGHLSVVELL
Sbjct: 2543 AAPVPTSRDTALTIAADKGHQKFVELLLSRNASVEVKNKKGNSPLWLAAHGGHLSVVELL 2602

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              H ADIDSQDNR+VSCLMAAFRKGH K V+WMV +V+QFPSDQEM R+I T++DKEL+D
Sbjct: 2603 YDHNADIDSQDNRRVSCLMAAFRKGHTKIVKWMVQYVSQFPSDQEMIRFIGTISDKELID 2662

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREES 400
            KC +C  ++R AK  QA +ANKNA+ILLEELD+E+ REES
Sbjct: 2663 KCFDCMKILRSAKEAQAVKANKNASILLEELDLERTREES 2702

Mediator of receptor tyrosine kinase (RTK) signaling, and may act either downstream of MAPK or transduce signaling through a parallel branch of the RTK pathway.
Drosophila melanogaster (taxid: 7227)

>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens GN=ANKHD1 PE=1 SV=1

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/406 (79%), Positives = 358/406 (88%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            +D+D+ TESNHDTALTLACAGGHEELV +L++R A IEHRDKKGFTPLILAATAGH  VV
Sbjct: 1045 VDIDAHTESNHDTALTLACAGGHEELVSVLIARDAKIEHRDKKGFTPLILAATAGHVGVV 1104

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            +ILL+   D+EAQSERTKDTPLSLACSGGR EVV+LLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1105 EILLDKGGDIEAQSERTKDTPLSLACSGGRQEVVDLLLARGANKEHRNVSDYTPLSLAAS 1164

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGH  AVKLLLDMGSDINAQIETNR
Sbjct: 1165 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHVPAVKLLLDMGSDINAQIETNR 1224

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct: 1225 NTALTLACFQGRAEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1284

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLA+NGGH  VV+LL
Sbjct: 1285 APPVPSSRDTALTIAADKGHYKFCELLIHRGAHIDVRNKKGNTPLWLASNGGHFDVVQLL 1344

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
             + GAD+D+ DNRK++ LM+AFRKGHVK V+++V  V QFPSD E  RYI T+ DKELL 
Sbjct: 1345 VQAGADVDAADNRKITPLMSAFRKGHVKVVQYLVKEVNQFPSDIECMRYIATITDKELLK 1404

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 406
            KC +C   I  AK+QQA  ANKNA+ILL+ELD+EK REES++ A A
Sbjct: 1405 KCHQCVETIVKAKDQQAAEANKNASILLKELDLEKSREESRKQALA 1450

May play a role as a scaffolding protein that may be associated with the abnormal phenotype of leukemia cells. Isoform 2 may possess an antiapoptotic effect and protect cells during normal cell survival through its regulation of caspases.

Homo sapiens (taxid: 9606)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/406 (81%), Positives = 363/406 (89%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct: 1073 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 1132

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1133 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 1192

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 1193 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1252

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct: 1253 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1312

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct: 1313 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1372

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
             + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct: 1373 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1432

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 406
            KC  C   I  AK++QA  ANKNA+ILLEELD+EK REES+R A A
Sbjct: 1433 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEKLREESRRLALA 1478

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/406 (81%), Positives = 362/406 (89%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct: 1069 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 1128

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1129 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 1188

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 1189 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1248

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct: 1249 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1308

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            APPVPSSRDTALTIAADKGH +F ELL+ KGA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct: 1309 APPVPSSRDTALTIAADKGHYKFCELLIGKGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1368

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
             +  AD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct: 1369 VQATADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1428

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 406
            KC  C   I  AK++QA  ANKNA+ILLEELD+EK REES+R A A
Sbjct: 1429 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEKLREESRRLALA 1474

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|Q21920|ANKHM_CAEEL Ankyrin repeat and KH domain-containing protein R11A8.7 OS=Caenorhabditis elegans GN=R11A8.7 PE=2 SV=3

 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/376 (66%), Positives = 300/376 (79%)

Query: 17   LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
            +ACA GH+++VELLL  GA+IEHRDKKGF+PLI+AATAGH  VV++LL + A +EAQS+R
Sbjct: 1241 IACANGHKDIVELLLKEGANIEHRDKKGFSPLIIAATAGHSSVVEVLLKNHAAIEAQSDR 1300

Query: 77   TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
            TKDT LSLACSGGR +VVELLL  GANKEHRNVSDYTPLSLA+SGGY+ I+ +LLT G+E
Sbjct: 1301 TKDTALSLACSGGRKDVVELLLAHGANKEHRNVSDYTPLSLASSGGYIEIVNMLLTAGSE 1360

Query: 137  INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
            INSRTGSKLGISPLMLA+MNGH  A ++LL+ GSDINAQIETNRNTALTLA FQGR EVV
Sbjct: 1361 INSRTGSKLGISPLMLASMNGHREATRVLLEKGSDINAQIETNRNTALTLASFQGRTEVV 1420

Query: 197  SLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256
             LLL   ANVEHRAKTGLTPLME ASGGYV+VG +L+  GAD NA PV  ++DTALTI+A
Sbjct: 1421 KLLLAYNANVEHRAKTGLTPLMECASGGYVDVGNLLIAAGADTNASPVQQTKDTALTISA 1480

Query: 257  DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
            +KGH +FV +LL+  A V+V+NKKG + LWLA NGG+LS  + L + GAD D  DNRK+S
Sbjct: 1481 EKGHEKFVRMLLNGDAAVDVRNKKGCTALWLACNGGYLSTAQALLEKGADPDMFDNRKIS 1540

Query: 317  CLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQ 376
             +MAAFRKGHV+ V++MVN   QFP++Q++ R  QT    ++  KC EC  +IR AK  Q
Sbjct: 1541 PMMAAFRKGHVEIVKYMVNSAKQFPNEQDLIRAQQTAETDDIKKKCGECIDIIRSAKKAQ 1600

Query: 377  AERANKNANILLEELD 392
            AE A   A  LLE +D
Sbjct: 1601 AESAELAAQKLLELID 1616

Caenorhabditis elegans (taxid: 6239)

>sp|Q60J38|ANKHM_CAEBR Ankyrin repeat and KH domain-containing protein CBG24701 OS=Caenorhabditis briggsae GN=CBG24701 PE=3 SV=3

 Score =  507 bits (1305), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 247/401 (61%), Positives = 310/401 (77%), Gaps = 5/401 (1%)

Query: 3    VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDI 62
            +D  T+S  +T L++AC+ GH E+VELLL  GA+IEHRDKKGFTPLI+AAT GH  +V++
Sbjct: 1266 IDKATDSTLETPLSIACSNGHREVVELLLKEGANIEHRDKKGFTPLIIAATYGHAPIVEV 1325

Query: 63   LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG 122
            LL + A +EAQS+RTKDT LSLAC+ GR +VVE+LL  GANKEHRNVSDYTPLSLA+S G
Sbjct: 1326 LLKNHAAIEAQSDRTKDTALSLACTAGRKDVVEMLLAHGANKEHRNVSDYTPLSLASSSG 1385

Query: 123  YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETN--- 179
            +++I+ LLLT G+EINSRTGSKLGISPLMLAAMNGH    K+LL+ GSDINAQIETN   
Sbjct: 1386 FLDIVNLLLTAGSEINSRTGSKLGISPLMLAAMNGHKETTKVLLEKGSDINAQIETNSYL 1445

Query: 180  --RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
              RNTALTLA FQGR EVV LLL   ANVEHRAKTGLTPLME ASGGYV+VG +L++ GA
Sbjct: 1446 FYRNTALTLASFQGRFEVVKLLLCYNANVEHRAKTGLTPLMECASGGYVDVGNLLIENGA 1505

Query: 238  DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVV 297
            D NA PV S++DTALTIAA+KGH +FV++LL      +++NKKG S LWLA NGGHL   
Sbjct: 1506 DPNASPVQSTKDTALTIAAEKGHEKFVQMLLDNDVIYDIRNKKGCSALWLACNGGHLGTA 1565

Query: 298  ELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKE 357
            + L   GAD D  DNRK+S ++AAFRKGH++ ++++V H  QFP++ ++ R   T+   +
Sbjct: 1566 QALVFKGADTDMFDNRKMSPMVAAFRKGHIEIIKFLVGHAKQFPNETDLVRMQSTLECAD 1625

Query: 358  LLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWRE 398
            L+ +C EC ++IR AK  QAE A + AN LL+ +D EK R+
Sbjct: 1626 LVARCGECIIIIRNAKKAQAETAEETANRLLQLIDDEKERD 1666

Caenorhabditis briggsae (taxid: 6238)

>sp|Q9ULJ7|ANR50_HUMAN Ankyrin repeat domain-containing protein 50 OS=Homo sapiens GN=ANKRD50 PE=1 SV=4

 Score =  175 bits (444), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/337 (35%), Positives = 183/337 (54%), Gaps = 7/337 (2%)

Query: 2    DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            DVD  T  +   AL +  + GH  +V LL+ RGA+++H DK G TPL++AA  GH  VVD
Sbjct: 707  DVDGRTALS-VAALCVPASKGHASVVSLLIDRGAEVDHCDKDGMTPLLVAAYEGHVDVVD 765

Query: 62   ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
            +LL   AD++  ++    TPL  A S G   VV  LL  GA  +  +    T LS+A++ 
Sbjct: 766  LLLEGGADVD-HTDNNGRTPLLAAASMGHASVVNTLLFWGAAVDSIDSEGRTVLSIASAQ 824

Query: 122  GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
            G V +++ LL  G + N R  +  G +PL +AA  GH    + L++ G+  N +I+ +  
Sbjct: 825  GNVEVVRTLLDRGLDENHRDDA--GWTPLHMAAFEGHRLICEALIEQGARTN-EIDNDGR 881

Query: 182  TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
                LA  +G ++ V +LL+ K+N++ R   G   L  AA  G+ ++  +L   GADVN 
Sbjct: 882  IPFILASQEGHYDCVQILLENKSNIDQRGYDGRNALRVAALEGHRDIVELLFSHGADVNC 941

Query: 242  PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLC 301
                  R T L I A +      E  L  GA VE  + +G + L ++   GH+ +V++L 
Sbjct: 942  KDA-DGRPT-LYILALENQLTMAEYFLENGANVEASDAEGRTALHVSCWQGHMEMVQVLI 999

Query: 302  KHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
             + AD+++ DN K S L +A  +GHVK V+ ++ H A
Sbjct: 1000 AYHADVNAADNEKRSALQSAAWQGHVKVVQLLIEHGA 1036

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score =  169 bits (429), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 121/364 (33%), Positives = 180/364 (49%), Gaps = 41/364 (11%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
           N  T L +AC     +++ELLL  GA I+   + G TP+ +AA  GH  +V  L++H A 
Sbjct: 399 NGFTPLHIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGAS 458

Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
               + R  +T L +A   G+ EVV  L+  GA  E +   D TPL ++A  G  +I++ 
Sbjct: 459 PNTTNVR-GETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQ 517

Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN-TALTLAC 188
           LL  GA  N+ T S  G +PL L+A  GH      LLD G+ ++  I T +  T L +A 
Sbjct: 518 LLQQGASPNAATTS--GYTPLHLSAREGHEDVAAFLLDHGASLS--ITTKKGFTPLHVAA 573

Query: 189 FQGRHEVVSLLLDRKANVEHRAKTGLTPLM----------------------EAASGGY- 225
             G+ EV +LLL + A+ +   K+GLTPL                        AA  GY 
Sbjct: 574 KYGKLEVANLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYT 633

Query: 226 ----------VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE 275
                     +++   LL+ GAD NA  V      ++ +AA +GH   V LLL + A V 
Sbjct: 634 PLHIAAKKNQMDIATTLLEYGADANA--VTRQGIASVHLAAQEGHVDMVSLLLGRNANVN 691

Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
           + NK G +PL LAA    ++V E+L   GA +D+Q     + L      G++K V +++ 
Sbjct: 692 LSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQ 751

Query: 336 HVAQ 339
           H A+
Sbjct: 752 HSAK 755

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 124/364 (34%), Positives = 180/364 (49%), Gaps = 41/364 (11%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
           N  T L +AC      ++ELLL  GA I+   + G TP+ +AA  GH  +V  L++H A 
Sbjct: 382 NGFTPLHIACKKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGAS 441

Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
               + R  +T L +A   G+ EVV  L+  GA  E +   D TPL ++A  G  +I++ 
Sbjct: 442 PNTTNVR-GETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKADIVQQ 500

Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN-TALTLAC 188
           LL  GA  N+ T S  G +PL LAA  GH      LLD G+ ++  I T +  T L +A 
Sbjct: 501 LLQQGASPNAATTS--GYTPLHLAAREGHEDVAAFLLDHGASLS--ITTKKGFTPLHVAA 556

Query: 189 FQGRHEVVSLLLDRKANVEHRAKTGLTPLM----------------------EAASGGY- 225
             G+ EV SLLL + A+ +   K+GLTPL                        AA  GY 
Sbjct: 557 KYGKLEVASLLLQKSASPDAAGKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYT 616

Query: 226 ----------VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE 275
                     +++   LL+ GAD NA  V      ++ +AA +GH   V LLLS+ A V 
Sbjct: 617 PLHIAAKKNQMDIATSLLEYGADANA--VTRQGIASVHLAAQEGHVDMVSLLLSRNANVN 674

Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
           + NK G +PL LAA    ++V E+L   GA +D+Q     + L      G++K V +++ 
Sbjct: 675 LSNKSGLTPLHLAAQEDRVNVAEVLVNQGAHVDAQTKMGYTPLHVGCHYGNIKIVNFLLQ 734

Query: 336 HVAQ 339
           H A+
Sbjct: 735 HSAK 738

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score =  166 bits (421), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/375 (35%), Positives = 189/375 (50%), Gaps = 48/375 (12%)

Query: 3   VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDI 62
           VDS T+   +TAL +A   G  E+V++L+  GA+I  + + GFTPL +AA   H  VV  
Sbjct: 90  VDSATKKG-NTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKY 148

Query: 63  LLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLL---TRG---------------- 101
           LL + A+   QS  T+D  TPL++A   G  + V +LL   T+G                
Sbjct: 149 LLENGAN---QSTATEDGFTPLAVALQQGHNQAVAILLENDTKGKVRLPALHIAARKDDT 205

Query: 102 -------ANKEHRNV-----------SDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS 143
                   N  + +V           S +TPL +AA  G VN+  LLL  GA ++    +
Sbjct: 206 KSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVD--FTA 263

Query: 144 KLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK 203
           + GI+PL +A+  G+T  VKLLLD G  I+A+      T L  A   G  +VV LLL+RK
Sbjct: 264 RNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGL-TPLHCAARSGHDQVVELLLERK 322

Query: 204 ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF 263
           A +  R K GL+PL  AA G +VE  + LL   A V+   V     TAL +AA  GH R 
Sbjct: 323 APLLARTKNGLSPLHMAAQGDHVECVKHLLQYKAPVDD--VTLDYLTALHVAAHCGHYRV 380

Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
            +LLL K A    +   G +PL +A     + V+ELL K+GA I +     ++ +  A  
Sbjct: 381 TKLLLDKRANPNARALNGFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAF 440

Query: 324 KGHVKAVRWMVNHVA 338
            GH+  V  ++ + A
Sbjct: 441 MGHLNIVLLLLQNGA 455

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
307212336	2982	Ankyrin repeat domain-containing protein	0.848	0.169	0.760	0.0
350419534	3091	PREDICTED: hypothetical protein LOC10074	0.874	0.168	0.732	0.0
328790111	3136	PREDICTED: hypothetical protein LOC40998	0.848	0.161	0.759	0.0
307186886	2898	Ankyrin repeat domain-containing protein	0.845	0.173	0.760	0.0
332022374	3049	Ankyrin repeat and KH domain-containing	0.843	0.164	0.759	0.0
242019742	2803	multiple ankyrin repeats single kh domai	0.854	0.181	0.743	0.0
345496985	757	PREDICTED: ankyrin repeat and KH domain-	0.671	0.528	0.912	0.0
270002082	2691	hypothetical protein TcasGA2_TC001033 [T	0.587	0.130	0.892	0.0
189234573	2677	PREDICTED: similar to Ankyrin repeat dom	0.605	0.134	0.892	0.0
328698338	2652	PREDICTED: hypothetical protein LOC10016	0.622	0.139	0.857	0.0

>gi|307212336|gb|EFN88140.1| Ankyrin repeat domain-containing protein 17 [Harpegnathos saltator]

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/552 (76%), Positives = 448/552 (81%), Gaps = 46/552 (8%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            MDVDSET+SNHDTALTLACAGGHE+LVELLLSRGADIEHRDKKGFTPLILAATAGH KVV
Sbjct: 1407 MDVDSETDSNHDTALTLACAGGHEDLVELLLSRGADIEHRDKKGFTPLILAATAGHQKVV 1466

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            +ILLNH AD+EAQSERTKDTPLSLACSGGRYEVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1467 EILLNHGADIEAQSERTKDTPLSLACSGGRYEVVELLLNRGANKEHRNVSDYTPLSLAAS 1526

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 1527 GGYVNIIKLLLNHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1586

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL KGADVN
Sbjct: 1587 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLTKGADVN 1646

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVPSSRDTALTIAADKGHCRFVELLLS+G QVEVKNKKGNSPLWLAANGGHL+VV+LL
Sbjct: 1647 ATPVPSSRDTALTIAADKGHCRFVELLLSRGTQVEVKNKKGNSPLWLAANGGHLNVVDLL 1706

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
               GADIDSQDNRKVSCLMAAFRKGH+K V+WMVNHV QFPSDQEMTRY+ T++DKELL+
Sbjct: 1707 YHAGADIDSQDNRKVSCLMAAFRKGHIKVVKWMVNHVTQFPSDQEMTRYVATISDKELLE 1766

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 420
            KCQEC  VIR AK  QA +ANKNA ILLEELDMEK REESK+AA AR+RERKK+KKLEKK
Sbjct: 1767 KCQECVKVIRAAKETQAAKANKNATILLEELDMEKTREESKKAAAARRRERKKKKKLEKK 1826

Query: 421  EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
            EEKRK  EE +      KN+ A                                +++   
Sbjct: 1827 EEKRKMHEEYK------KNETA------------------------------YEDKEDNG 1850

Query: 481  KLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDA 540
            K    EE  +A + E E  +  E  E     +    E+ D       R EG   DSGIDA
Sbjct: 1851 KKSGDEECDRADDSEHEGGDGCERIESVPSPVNRSPEDPD-------REEG---DSGIDA 1900

Query: 541  NSQASCSSNEVK 552
            NSQ SCSSN+VK
Sbjct: 1901 NSQGSCSSNDVK 1912

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419534|ref|XP_003492217.1| PREDICTED: hypothetical protein LOC100740063 [Bombus impatiens]

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/579 (73%), Positives = 455/579 (78%), Gaps = 58/579 (10%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            MDVDSET+SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGH KVV
Sbjct: 1475 MDVDSETDSNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHQKVV 1534

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            +ILLNH AD+EAQSERTKDTPLSLACSGGRYEVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1535 EILLNHGADIEAQSERTKDTPLSLACSGGRYEVVELLLNRGANKEHRNVSDYTPLSLAAS 1594

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGH AAVKLLLDMGSDINAQIETNR
Sbjct: 1595 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHVAAVKLLLDMGSDINAQIETNR 1654

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL KGADVN
Sbjct: 1655 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLTKGADVN 1714

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVPSSRDTALTIAADKGHCRFVELLLS+G QVEVKNKKGNSPLWLAANGGHL+VV+LL
Sbjct: 1715 ATPVPSSRDTALTIAADKGHCRFVELLLSRGTQVEVKNKKGNSPLWLAANGGHLNVVDLL 1774

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
               GADIDSQDNRKVSCLMAAFRKGH+K V+WMVNHV QFPSDQEMTRYI TV+DKELL+
Sbjct: 1775 YHAGADIDSQDNRKVSCLMAAFRKGHIKVVKWMVNHVTQFPSDQEMTRYIATVSDKELLE 1834

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 420
            KCQEC  VIR AK  QA +ANKNA ILLEELDMEK REESK+AA AR+RERKK+KKLEKK
Sbjct: 1835 KCQECVKVIRAAKETQAAKANKNATILLEELDMEKTREESKKAAAARRRERKKKKKLEKK 1894

Query: 421  EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
            EEKRK  EE ++                      E + E   E  K++            
Sbjct: 1895 EEKRKLHEEYKK---------------------NETNYEDKEENGKKSGD---------- 1923

Query: 481  KLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDA 540
                 EE  +A + E E  +  E  +     +    E+         R EG   DSGIDA
Sbjct: 1924 -----EECDRADDSEHETGDSCERMDSMPSPVNRSPEDPY-------REEG---DSGIDA 1968

Query: 541  NSQASCSSNEVK------------TAAPNSRRKDKKKKK 567
            NSQ SCSSN+VK              +PN+  KD   ++
Sbjct: 1969 NSQGSCSSNDVKAREKKKEKKKKKANSPNNNEKDTSPQR 2007

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790111|ref|XP_393472.4| PREDICTED: hypothetical protein LOC409983 [Apis mellifera]

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/552 (75%), Positives = 447/552 (80%), Gaps = 46/552 (8%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            MDVDSET+SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGH KVV
Sbjct: 1488 MDVDSETDSNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHQKVV 1547

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            +ILLNH AD+EAQSERTKDTPLSLACSGGRYEVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1548 EILLNHGADIEAQSERTKDTPLSLACSGGRYEVVELLLNRGANKEHRNVSDYTPLSLAAS 1607

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGH AAVKLLLDMGSDINAQIETNR
Sbjct: 1608 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHVAAVKLLLDMGSDINAQIETNR 1667

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL KGADVN
Sbjct: 1668 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLTKGADVN 1727

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVPSSRDTALTIAADKGHCRFVELLLS+G QVEVKNKKGNSPLWLAANGGHL+VV+LL
Sbjct: 1728 ATPVPSSRDTALTIAADKGHCRFVELLLSRGTQVEVKNKKGNSPLWLAANGGHLNVVDLL 1787

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
               GADIDSQDNRKVSCLMAAFRKGH+K V+WMVNHV QFPSDQEMTRYI TV+DKELL+
Sbjct: 1788 YHAGADIDSQDNRKVSCLMAAFRKGHIKVVKWMVNHVTQFPSDQEMTRYIATVSDKELLE 1847

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 420
            KCQEC  VIR AK  QA +ANKNA ILLEELDMEK REESK+AA AR+RERKK+KKLEKK
Sbjct: 1848 KCQECVKVIRAAKETQAAKANKNATILLEELDMEKTREESKKAAAARRRERKKKKKLEKK 1907

Query: 421  EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
            EEKRK  EE ++                      E + E   E  K++            
Sbjct: 1908 EEKRKLHEEYKK---------------------NETNYEDKEENGKKSGD---------- 1936

Query: 481  KLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDA 540
                 EE  +A + E E  +  E  +     +    E+         R EG+   SGIDA
Sbjct: 1937 -----EECDRADDSEHETGDSCERMDSMPSPVNRSPEDPY-------REEGD---SGIDA 1981

Query: 541  NSQASCSSNEVK 552
            NSQ SCSSN+VK
Sbjct: 1982 NSQGSCSSNDVK 1993

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186886|gb|EFN72287.1| Ankyrin repeat domain-containing protein 17 [Camponotus floridanus]

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/552 (76%), Positives = 448/552 (81%), Gaps = 48/552 (8%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            M+VDSET+SNHDTALTLACAGGHE+LV+LL+SRGADIEHRDKKGFTPLILAATAGH KVV
Sbjct: 1393 MEVDSETDSNHDTALTLACAGGHEDLVDLLVSRGADIEHRDKKGFTPLILAATAGHQKVV 1452

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            D LLNH AD+EAQSERTKDTPLSLACSGGRYEVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1453 DGLLNHGADIEAQSERTKDTPLSLACSGGRYEVVELLLNRGANKEHRNVSDYTPLSLAAS 1512

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 1513 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1572

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL KGADVN
Sbjct: 1573 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLSKGADVN 1632

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVPSSRDTALTIAADKGHCRFVELLL+KG QVEVKNKKGNSPLWLAANGGHLSVV+LL
Sbjct: 1633 ATPVPSSRDTALTIAADKGHCRFVELLLTKGTQVEVKNKKGNSPLWLAANGGHLSVVDLL 1692

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
                ADIDSQDNRKVSCLMAAFRKGH+K V+WMVNHV QFPSDQEMTRYI TV+DKELL+
Sbjct: 1693 YHANADIDSQDNRKVSCLMAAFRKGHIKVVKWMVNHVTQFPSDQEMTRYIATVSDKELLE 1752

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 420
            KCQEC  VIR AK  QA +ANKNA ILLEELDMEK REESK+AA AR+RERKK+KKLEKK
Sbjct: 1753 KCQECVKVIRAAKETQAAKANKNATILLEELDMEKTREESKKAAAARRRERKKKKKLEKK 1812

Query: 421  EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
            EEKRK  EE ++                      E   E   E  K++            
Sbjct: 1813 EEKRKLHEEYKK---------------------NETTFEDKEENGKKSG----------- 1840

Query: 481  KLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDA 540
                 EE  +A + E E  +E  ++ V    M    E+ D       R EG   DSGIDA
Sbjct: 1841 ----DEECDRADDSEHEGGDE-RMESVPSP-MNRSPEDPD-------REEG---DSGIDA 1884

Query: 541  NSQASCSSNEVK 552
            NSQ SCSSN+VK
Sbjct: 1885 NSQGSCSSNDVK 1896

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022374|gb|EGI62686.1| Ankyrin repeat and KH domain-containing protein 1 [Acromyrmex echinatior]

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/552 (75%), Positives = 451/552 (81%), Gaps = 49/552 (8%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            +DVDSET+SNHDTALTLACAGGHE+LVELLLSRGADIEHRDKKGFTPLILAATAGH KVV
Sbjct: 1404 IDVDSETDSNHDTALTLACAGGHEDLVELLLSRGADIEHRDKKGFTPLILAATAGHQKVV 1463

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            +ILLNH AD+EAQSERTKDTPLSLACSGGRYEVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1464 EILLNHGADIEAQSERTKDTPLSLACSGGRYEVVELLLNRGANKEHRNVSDYTPLSLAAS 1523

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 1524 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1583

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL KGADVN
Sbjct: 1584 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLTKGADVN 1643

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVPSSRDTALTIAADKGHCRFVELLLS+G QVEVKNKKGNSPLWLAANGGHL+VV+LL
Sbjct: 1644 ATPVPSSRDTALTIAADKGHCRFVELLLSRGTQVEVKNKKGNSPLWLAANGGHLNVVDLL 1703

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
               GADIDSQDNRKVSCLMAAFRKGH+K V+WMVNHV QFPSDQEMTRYI TV+DKELL+
Sbjct: 1704 FHAGADIDSQDNRKVSCLMAAFRKGHIKVVKWMVNHVTQFPSDQEMTRYIATVSDKELLE 1763

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 420
            KC EC  VIR AK  QA +ANKNA+ILLEELDMEK REESK+AA AR+RERKK+KKLEKK
Sbjct: 1764 KCHECVKVIRAAKETQAAKANKNASILLEELDMEKNREESKKAAAARRRERKKKKKLEKK 1823

Query: 421  EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
            EEKRK  EE +               KN  +                       E K++ 
Sbjct: 1824 EEKRKLHEEYK---------------KNETVF----------------------EDKEES 1846

Query: 481  KLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDA 540
              +  EE  +A + E E  +E  ++ V    +    E+ D       R EG+   SGIDA
Sbjct: 1847 GKKSDEECDRADDSEHEGGDE-RMESVPSP-VNRSPEDPD-------REEGD---SGIDA 1894

Query: 541  NSQASCSSNEVK 552
            NSQ SCSSN+VK
Sbjct: 1895 NSQGSCSSNDVK 1906

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019742|ref|XP_002430318.1| multiple ankyrin repeats single kh domain protein, putative [Pediculus humanus corporis] gi|212515433|gb|EEB17580.1| multiple ankyrin repeats single kh domain protein, putative [Pediculus humanus corporis]

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/557 (74%), Positives = 456/557 (81%), Gaps = 48/557 (8%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            MDVDSET++NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGH+KVV
Sbjct: 1365 MDVDSETDTNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHEKVV 1424

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            DILLNH AD+EAQSERTKDTPLSLACSGGRYEVVELLLT+ ANKEHRNVSDYTPLSLAAS
Sbjct: 1425 DILLNHGADIEAQSERTKDTPLSLACSGGRYEVVELLLTKMANKEHRNVSDYTPLSLAAS 1484

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGHT AV++LLDMGSDINAQIETNR
Sbjct: 1485 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHTTAVRILLDMGSDINAQIETNR 1544

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN
Sbjct: 1545 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 1604

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            APPVPSSRDTALTIAADKGHCRFVELLLS+ A VEVKNKKGNSPLWLAANGGHL+VVELL
Sbjct: 1605 APPVPSSRDTALTIAADKGHCRFVELLLSRNAMVEVKNKKGNSPLWLAANGGHLNVVELL 1664

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
                ADIDSQDNRKVSCLMAAFRKGHVK V+WMVNHV QFPSDQ+MTR+I TVNDKELL+
Sbjct: 1665 YNLDADIDSQDNRKVSCLMAAFRKGHVKVVKWMVNHVTQFPSDQDMTRFIATVNDKELLE 1724

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 420
            KC EC  +IR AK+ Q+ +ANKNA+ILLEELDMEK REESK+AA AR+RERKK+KKLEKK
Sbjct: 1725 KCHECVKLIRAAKDLQSAKANKNASILLEELDMEKTREESKKAAAARRRERKKKKKLEKK 1784

Query: 421  EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
            EEKRK + E +      KN                   EK   +++   +  + E+   +
Sbjct: 1785 EEKRKLINENK------KN-------------------EKIPSDNEDEEEEEEAEKSDIE 1819

Query: 481  KLEKK--EEKRKAMEEEEEEEEEVEVQEVE----GEMMEEETEENDMHSSGGGRGEGEEG 534
            ++  K    K K M +E +   +V +        GE +++E              EG+  
Sbjct: 1820 EISPKVTYTKEKEMNKESKNNNDVRLNSSSPLRNGEALDKE--------------EGD-- 1863

Query: 535  DSGIDANSQASCSSNEV 551
             SGIDANSQ SCSSN+V
Sbjct: 1864 -SGIDANSQGSCSSNDV 1879

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496985|ref|XP_003427871.1| PREDICTED: ankyrin repeat and KH domain-containing protein mask [Nasonia vitripennis]

 Score =  765 bits (1976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/400 (91%), Positives = 379/400 (94%)

Query: 1   MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
           MDVDSET+SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGH KVV
Sbjct: 197 MDVDSETDSNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHQKVV 256

Query: 61  DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
           +IL NH AD+EAQSERTKDTPLSLACSGGRYEVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 257 EILFNHGADIEAQSERTKDTPLSLACSGGRYEVVELLLNRGANKEHRNVSDYTPLSLAAS 316

Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
           GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 317 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 376

Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
           NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL+KGADVN
Sbjct: 377 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLNKGADVN 436

Query: 241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
           A PVPSSRDTALTIAADKGHCRFVELLLSKG QVEVKNKKGNSPLWLAANGGHL+VV+LL
Sbjct: 437 ATPVPSSRDTALTIAADKGHCRFVELLLSKGTQVEVKNKKGNSPLWLAANGGHLNVVDLL 496

Query: 301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              GADIDSQDNRKVSCLMAAFRKGH+K V+WMVNHV QFPSDQEMTRYI TV+DKELL+
Sbjct: 497 YHAGADIDSQDNRKVSCLMAAFRKGHIKVVKWMVNHVTQFPSDQEMTRYIATVSDKELLE 556

Query: 361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREES 400
           +C EC  +IR AK  QA +ANKNA ILLEELDMEK REES
Sbjct: 557 RCHECVKIIRAAKETQAAKANKNATILLEELDMEKNREES 596

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002082|gb|EEZ98529.1| hypothetical protein TcasGA2_TC001033 [Tribolium castaneum]

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/400 (89%), Positives = 378/400 (94%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            +DVDS+T+SNHDTALTLACAGGHE+LV+LL++RGADIEHRDKKGFTPLILAATAGH+KVV
Sbjct: 1352 LDVDSKTDSNHDTALTLACAGGHEDLVDLLINRGADIEHRDKKGFTPLILAATAGHEKVV 1411

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            ++LLNH AD+EAQSERTKDTPLSLACSGGRYEVVELLL R ANKEHRNVSDYTPLSLAAS
Sbjct: 1412 EVLLNHNADIEAQSERTKDTPLSLACSGGRYEVVELLLNRNANKEHRNVSDYTPLSLAAS 1471

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 1472 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1531

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN
Sbjct: 1532 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 1591

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVPSSRDTALTIAADKGH RFVELLL +GAQ+EVKNKKGNSPLWLAANGGHL+VVELL
Sbjct: 1592 ATPVPSSRDTALTIAADKGHVRFVELLLCRGAQIEVKNKKGNSPLWLAANGGHLAVVELL 1651

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
                ADIDSQDNRKVSCLMAAFRKGHVK V+WMV+HV QFPSDQEM RYI TVNDKELL+
Sbjct: 1652 YNVNADIDSQDNRKVSCLMAAFRKGHVKVVKWMVHHVTQFPSDQEMIRYISTVNDKELLE 1711

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREES 400
            KCQEC  +IR AK  QA +ANKNA ILLEELDMEK REE+
Sbjct: 1712 KCQECVKIIRAAKETQAAKANKNATILLEELDMEKNREET 1751

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234573|ref|XP_974489.2| PREDICTED: similar to Ankyrin repeat domain-containing protein 17 (Gene trap ankyrin repeat protein) (Serologically defined breast cancer antigen NY-BR-16) [Tribolium castaneum]

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/400 (89%), Positives = 378/400 (94%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            +DVDS+T+SNHDTALTLACAGGHE+LV+LL++RGADIEHRDKKGFTPLILAATAGH+KVV
Sbjct: 1349 LDVDSKTDSNHDTALTLACAGGHEDLVDLLINRGADIEHRDKKGFTPLILAATAGHEKVV 1408

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            ++LLNH AD+EAQSERTKDTPLSLACSGGRYEVVELLL R ANKEHRNVSDYTPLSLAAS
Sbjct: 1409 EVLLNHNADIEAQSERTKDTPLSLACSGGRYEVVELLLNRNANKEHRNVSDYTPLSLAAS 1468

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 1469 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1528

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN
Sbjct: 1529 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 1588

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVPSSRDTALTIAADKGH RFVELLL +GAQ+EVKNKKGNSPLWLAANGGHL+VVELL
Sbjct: 1589 ATPVPSSRDTALTIAADKGHVRFVELLLCRGAQIEVKNKKGNSPLWLAANGGHLAVVELL 1648

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
                ADIDSQDNRKVSCLMAAFRKGHVK V+WMV+HV QFPSDQEM RYI TVNDKELL+
Sbjct: 1649 YNVNADIDSQDNRKVSCLMAAFRKGHVKVVKWMVHHVTQFPSDQEMIRYISTVNDKELLE 1708

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREES 400
            KCQEC  +IR AK  QA +ANKNA ILLEELDMEK REE+
Sbjct: 1709 KCQECVKIIRAAKETQAAKANKNATILLEELDMEKNREET 1748

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328698338|ref|XP_001946819.2| PREDICTED: hypothetical protein LOC100167340 [Acyrthosiphon pisum]

 Score =  740 bits (1910), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/408 (85%), Positives = 384/408 (94%)

Query: 1    MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
            ++VDS+TESNHDTALT+ACAGGHEELV+LLL RGA+IEHRDKKGFTPLILAAT G DK+V
Sbjct: 1243 INVDSQTESNHDTALTVACAGGHEELVKLLLVRGANIEHRDKKGFTPLILAATGGFDKIV 1302

Query: 61   DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
            +ILL++ A+MEAQSERTKDTPLSLACSGGRYEV +LLL RGANKEHRNVSDYTPLSLAAS
Sbjct: 1303 EILLSNVANMEAQSERTKDTPLSLACSGGRYEVCDLLLQRGANKEHRNVSDYTPLSLAAS 1362

Query: 121  GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            GGYVNIIKLLL++GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct: 1363 GGYVNIIKLLLSNGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1422

Query: 181  NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL+DKGADVN
Sbjct: 1423 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLIDKGADVN 1482

Query: 241  APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A PVPSSRDTALTIAADKGH RFVELLL K A VEVKNKKGNSPLWLAANGGHL V+ELL
Sbjct: 1483 ANPVPSSRDTALTIAADKGHVRFVELLLEKNAYVEVKNKKGNSPLWLAANGGHLGVIELL 1542

Query: 301  CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
             K GA+IDSQDNRKV+CLMAAFRKGHVK VRWMVNHV+QFPSDQEMTR++ T++DKE +D
Sbjct: 1543 YKVGANIDSQDNRKVTCLMAAFRKGHVKVVRWMVNHVSQFPSDQEMTRFLTTLSDKESID 1602

Query: 361  KCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 408
            KC +C + IR++K+QQA RANKNA+ILLEELDMEK +EE K+A+ AR+
Sbjct: 1603 KCHDCMIAIRISKDQQAARANKNASILLEELDMEKTKEELKKASAARR 1650

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
FB|FBgn0043884	4001	mask "multiple ankyrin repeats	0.662	0.098	0.860	1.4e-183
UNIPROTKB|E1BVC6	1330	Gga.53476 "Uncharacterized pro	0.662	0.296	0.822	2.8e-176
UNIPROTKB|I3LSK0	2222	ANKRD17 "Uncharacterized prote	0.662	0.177	0.820	9.4e-176
UNIPROTKB|F1LRM8	2341	Ankrd17 "Protein Ankrd17" [Rat	0.662	0.168	0.820	9.3e-175
UNIPROTKB|G5E964	2352	ANKRD17 "Ankyrin repeat domain	0.662	0.167	0.820	1.1e-174
UNIPROTKB|H0YM23	2487	ANKRD17 "Ankyrin repeat domain	0.662	0.158	0.820	5.3e-174
UNIPROTKB|E2QZ73	2488	ANKRD17 "Uncharacterized prote	0.662	0.158	0.820	5.3e-174
UNIPROTKB|E7EUV3	2490	ANKRD17 "Ankyrin repeat domain	0.662	0.158	0.820	5.4e-174
UNIPROTKB|J9NSE6	2551	ANKRD17 "Uncharacterized prote	0.662	0.154	0.820	8.3e-174
UNIPROTKB|F1LQP1	2592	Ankrd17 "Protein Ankrd17" [Rat	0.662	0.152	0.820	1.1e-173

FB|FBgn0043884 mask "multiple ankyrin repeats single KH domain" [Drosophila melanogaster (taxid:7227)]

 Score = 1759 (624.3 bits), Expect = 1.4e-183, Sum P(2) = 1.4e-183
 Identities = 340/395 (86%), Positives = 371/395 (93%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +++DSETESNHDTALTLACAGGHEELVELL++RGA+IEHRDKKGFTPLILAATAGHDKVV
Sbjct:  2303 IEIDSETESNHDTALTLACAGGHEELVELLINRGANIEHRDKKGFTPLILAATAGHDKVV 2362

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             DILL H A++EAQSERTKDTPLSLACSGGRYEVVELLL+ GANKEHRNVSDYTPLSLAAS
Sbjct:  2363 DILLKHSAELEAQSERTKDTPLSLACSGGRYEVVELLLSVGANKEHRNVSDYTPLSLAAS 2422

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIKLLL+HGAEINSRTGSKLGISPLMLAAMNGHT AVKLLLD GSDINAQIETNR
Sbjct:  2423 GGYVNIIKLLLSHGAEINSRTGSKLGISPLMLAAMNGHTPAVKLLLDQGSDINAQIETNR 2482

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGRHEVVSLLLDR+ANVEHRAKTGLTPLMEAASGGY+EVGRVLLDKGADVN
Sbjct:  2483 NTALTLACFQGRHEVVSLLLDRRANVEHRAKTGLTPLMEAASGGYIEVGRVLLDKGADVN 2542

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             A PVP+SRDTALTIAADKGH +FVELLLS+ A VEVKNKKGNSPLWLAA+GGHLSVVELL
Sbjct:  2543 AAPVPTSRDTALTIAADKGHQKFVELLLSRNASVEVKNKKGNSPLWLAAHGGHLSVVELL 2602

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
               H ADIDSQDNR+VSCLMAAFRKGH K V+WMV +V+QFPSDQEM R+I T++DKEL+D
Sbjct:  2603 YDHNADIDSQDNRRVSCLMAAFRKGHTKIVKWMVQYVSQFPSDQEMIRFIGTISDKELID 2662

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC +C  ++R AK  QA +ANKNA+ILLEELD+E+
Sbjct:  2663 KCFDCMKILRSAKEAQAVKANKNASILLEELDLER 2697

GO:0007016 "cytoskeletal anchoring at plasma membrane" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0008283 "cell proliferation" evidence=IMP

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=IGI

GO:0009987 "cellular process" evidence=IMP

GO:0003723 "RNA binding" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|E1BVC6 Gga.53476 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1654 (587.3 bits), Expect = 2.8e-176, Sum P(2) = 2.8e-176
 Identities = 325/395 (82%), Positives = 357/395 (90%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA+IEHRDKKGFTPLILAATAGH  VV
Sbjct:   677 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGANIEHRDKKGFTPLILAATAGHVGVV 736

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:   737 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 796

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:   797 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 856

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:   857 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 916

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+S+GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:   917 APPVPSSRDTALTIAADKGHYKFCELLISRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 976

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:   977 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1036

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1037 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1071

GO:0001955 "blood vessel maturation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051151 "negative regulation of smooth muscle cell differentiation" evidence=IEA

UNIPROTKB|I3LSK0 ANKRD17 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1649 (585.5 bits), Expect = 9.4e-176, Sum P(2) = 9.4e-176
 Identities = 324/395 (82%), Positives = 355/395 (89%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct:   691 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 750

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:   751 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 810

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:   811 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 870

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:   871 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 930

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:   931 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 990

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:   991 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1050

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1051 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1085

GO:0051151 "negative regulation of smooth muscle cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001955 "blood vessel maturation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1LRM8 Ankrd17 "Protein Ankrd17" [Rattus norvegicus (taxid:10116)]

 Score = 1649 (585.5 bits), Expect = 9.3e-175, Sum P(2) = 9.3e-175
 Identities = 324/395 (82%), Positives = 355/395 (89%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct:   807 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 866

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:   867 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 926

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:   927 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 986

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:   987 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1046

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:  1047 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1106

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:  1107 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1166

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1167 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1201

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|G5E964 ANKRD17 "Ankyrin repeat domain 17, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 1649 (585.5 bits), Expect = 1.1e-174, Sum P(2) = 1.1e-174
 Identities = 324/395 (82%), Positives = 355/395 (89%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct:   822 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 881

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:   882 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 941

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:   942 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1001

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:  1002 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1061

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:  1062 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1121

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:  1122 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1181

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1182 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1216

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H0YM23 ANKRD17 "Ankyrin repeat domain-containing protein 17" [Homo sapiens (taxid:9606)]

 Score = 1649 (585.5 bits), Expect = 5.3e-174, Sum P(2) = 5.3e-174
 Identities = 324/395 (82%), Positives = 355/395 (89%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct:   957 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 1016

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:  1017 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 1076

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:  1077 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1136

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:  1137 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1196

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:  1197 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1256

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:  1257 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1316

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1317 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1351

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2QZ73 ANKRD17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1649 (585.5 bits), Expect = 5.3e-174, Sum P(2) = 5.3e-174
 Identities = 324/395 (82%), Positives = 355/395 (89%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct:   954 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 1013

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:  1014 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 1073

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:  1074 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1133

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:  1134 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1193

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:  1194 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1253

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:  1254 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1313

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1314 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1348

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E7EUV3 ANKRD17 "Ankyrin repeat domain-containing protein 17" [Homo sapiens (taxid:9606)]

 Score = 1649 (585.5 bits), Expect = 5.4e-174, Sum P(2) = 5.4e-174
 Identities = 324/395 (82%), Positives = 355/395 (89%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct:   960 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 1019

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:  1020 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 1079

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:  1080 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1139

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:  1140 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1199

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:  1200 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1259

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:  1260 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1319

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1320 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1354

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|J9NSE6 ANKRD17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1649 (585.5 bits), Expect = 8.3e-174, Sum P(2) = 8.3e-174
 Identities = 324/395 (82%), Positives = 355/395 (89%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct:  1020 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 1079

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:  1080 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 1139

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:  1140 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1199

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:  1200 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1259

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:  1260 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1319

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:  1320 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1379

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1380 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1414

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1LQP1 Ankrd17 "Protein Ankrd17" [Rattus norvegicus (taxid:10116)]

 Score = 1649 (585.5 bits), Expect = 1.1e-173, Sum P(2) = 1.1e-173
 Identities = 324/395 (82%), Positives = 355/395 (89%)

Query:     1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             +D+D++TESNHDTALTLACAGGHEELV+ LL RGA IEHRDKKGFTPLILAATAGH  VV
Sbjct:  1058 IDIDAQTESNHDTALTLACAGGHEELVQTLLERGASIEHRDKKGFTPLILAATAGHVGVV 1117

Query:    61 DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
             +ILL++ AD+EAQSERTKDTPLSLACSGGR EVVELLL RGANKEHRNVSDYTPLSLAAS
Sbjct:  1118 EILLDNGADIEAQSERTKDTPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAAS 1177

Query:   121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
             GGYVNIIK+LL  GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR
Sbjct:  1178 GGYVNIIKILLNAGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 1237

Query:   181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             NTALTLACFQGR EVVSLLLDRKANVEHRAKTGLTPLMEAASGGY EVGRVLLDKGADVN
Sbjct:  1238 NTALTLACFQGRTEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYAEVGRVLLDKGADVN 1297

Query:   241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             APPVPSSRDTALTIAADKGH +F ELL+ +GA ++V+NKKGN+PLWLAANGGHL VV+LL
Sbjct:  1298 APPVPSSRDTALTIAADKGHYKFCELLIGRGAHIDVRNKKGNTPLWLAANGGHLDVVQLL 1357

Query:   301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLD 360
              + GAD+D+ DNRK++ LMAAFRKGHVK VR++V  V QFPSD E  RYI T+ DKE+L 
Sbjct:  1358 VQAGADVDAADNRKITPLMAAFRKGHVKVVRYLVKEVNQFPSDSECMRYIATITDKEMLK 1417

Query:   361 KCQECSMVIRVAKNQQAERANKNANILLEELDMEK 395
             KC  C   I  AK++QA  ANKNA+ILLEELD+EK
Sbjct:  1418 KCHLCMESIVQAKDRQAAEANKNASILLEELDLEK 1452

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IWZ3	ANKH1_HUMAN	No assigned EC number	0.7906	0.4983	0.1168	yes	N/A
Q9VCA8	ANKHM_DROME	No assigned EC number	0.86	0.6090	0.0907	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	596
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-34
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-32
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-31
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-29
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-25
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-23
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-23
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-22
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	9e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-21
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-21
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-19
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-19
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-17
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-17
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-16
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-16
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-15
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	6e-13
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	7e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-11
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-11
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	8e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-10
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-09
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-09
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	9e-09
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	9e-09
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	9e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-08
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	8e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-08
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	1e-07
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	2e-07
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	3e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-07
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	9e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-06
pfam09756	189	pfam09756, DDRGK, DDRGK domain	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-06
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-06
pfam09507	427	pfam09507, CDC27, DNA polymerase subunit Cdc27	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-06
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	4e-06
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	5e-06
pfam04147	809	pfam04147, Nop14, Nop14-like family	5e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-06
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	1e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-05
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	1e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-05
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	3e-05
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	4e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-05
smart00248	30	smart00248, ANK, ankyrin repeats	6e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-05
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	9e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	9e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	1e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	1e-04
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	1e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	2e-04
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	3e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-04
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	3e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	3e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-04
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-04
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	3e-04
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	3e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-04
smart00248	30	smart00248, ANK, ankyrin repeats	4e-04
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-04
pfam13904	261	pfam13904, DUF4207, Domain of unknown function (DU	4e-04
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	4e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	5e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	5e-04
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	5e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	5e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	6e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	6e-04
pfam11169	103	pfam11169, DUF2956, Protein of unknown function (D	6e-04
COG5271	4600	COG5271, MDN1, AAA ATPase containing von Willebran	7e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	8e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	0.001
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.001
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	0.001
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
pfam13868	349	pfam13868, Trichoplein, Tumour suppressor, Mitosta	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.002
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.002
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	0.003
pfam10310	436	pfam10310, DUF2413, Protein of unknown function (D	0.003
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
pfam07767	387	pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)	0.003
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	0.003
COG4487	438	COG4487, COG4487, Uncharacterized protein conserve	0.003
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.004
pfam09756	189	pfam09756, DDRGK, DDRGK domain	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
smart00248	30	smart00248, ANK, ankyrin repeats	0.004
smart00248	30	smart00248, ANK, ankyrin repeats	0.004
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.004
pfam05262	489	pfam05262, Borrelia_P83, Borrelia P83/100 protein	0.004
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	0.004
pfam12072	201	pfam12072, DUF3552, Domain of unknown function (DU	0.004
pfam07543	139	pfam07543, PGA2, Protein trafficking PGA2	0.004
PRK00106	535	PRK00106, PRK00106, hypothetical protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  125 bits (317), Expect = 3e-34
 Identities = 55/119 (46%), Positives = 75/119 (63%), Gaps = 1/119 (0%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           T L LA + GH E+V+LLL  GAD+  +D  G TPL LAA  GH ++V +LL   AD+ A
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
           +  +  +TPL LA   G  +VV+LLL  GA+   R+    TPL LAA  G++ ++KLLL
Sbjct: 69  RD-KDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  123 bits (311), Expect = 2e-33
 Identities = 63/128 (49%), Positives = 83/128 (64%), Gaps = 3/128 (2%)

Query: 39  HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
            RD+ G TPL LAA+ GH +VV +LL + AD+ A+      TPL LA   G  E+V+LLL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND-GRTPLHLAAKNGHLEIVKLLL 60

Query: 99  TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
            +GA+   R+    TPL LAA  G ++++KLLL HGA++N+R   K G +PL LAA NGH
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD--KDGRTPLHLAAKNGH 118

Query: 159 TAAVKLLL 166
              VKLLL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  121 bits (305), Expect = 1e-32
 Identities = 60/125 (48%), Positives = 77/125 (61%), Gaps = 3/125 (2%)

Query: 76  RTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
               TPL LA S G  EVV+LLL  GA+   ++    TPL LAA  G++ I+KLLL  GA
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64

Query: 136 EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEV 195
           ++N+R   K G +PL LAA NG+   VKLLL  G+D+NA+ + +  T L LA   G  EV
Sbjct: 65  DVNARD--KDGNTPLHLAARNGNLDVVKLLLKHGADVNAR-DKDGRTPLHLAAKNGHLEV 121

Query: 196 VSLLL 200
           V LLL
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  118 bits (298), Expect = 1e-31
 Identities = 58/127 (45%), Positives = 83/127 (65%), Gaps = 2/127 (1%)

Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
            R + G TPL  AAS G++EV ++LL+ GADVNA    +   T L +AA  GH   V+LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 268 LSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327
           L KGA V  ++K GN+PL LAA  G+L VV+LL KHGAD++++D    + L  A + GH+
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 328 KAVRWMV 334
           + V+ ++
Sbjct: 120 EVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (294), Expect = 5e-31
 Identities = 58/123 (47%), Positives = 74/123 (60%), Gaps = 3/123 (2%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
           G +PL LAA NGH   VKLLL+ G+D+NA+   +  T L LA   G  E+V LLL++ A+
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKLLLEKGAD 65

Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
           V  R K G TPL  AA  G ++V ++LL  GADVNA        T L +AA  GH   V+
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA--RDKDGRTPLHLAAKNGHLEVVK 123

Query: 266 LLL 268
           LLL
Sbjct: 124 LLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  111 bits (279), Expect = 5e-29
 Identities = 58/126 (46%), Positives = 75/126 (59%), Gaps = 10/126 (7%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           +  T L LA   G  EVV LLL+  A+V  +   G TPL  AA  G++E+ ++LL+KGAD
Sbjct: 6   DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD 65

Query: 239 VNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
           VNA      RD    T L +AA  G+   V+LLL  GA V  ++K G +PL LAA  GHL
Sbjct: 66  VNA------RDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL 119

Query: 295 SVVELL 300
            VV+LL
Sbjct: 120 EVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score =  107 bits (269), Expect = 6e-25
 Identities = 66/317 (20%), Positives = 119/317 (37%), Gaps = 71/317 (22%)

Query: 55  GHDKVVDILLNHKADMEAQSERTKD----TPLSLACSGGRYEVVELLLTRGANKEHRNVS 110
              +++ +       ME             PL LA      +VV++LL  GA+      +
Sbjct: 8   TKSRIIKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKN 67

Query: 111 DYTPLSLAASGGYV-----NIIKLLLTHGAEINSRTGSKLGISPLMLAAMN--GHTAAVK 163
           + TPL   ++  Y       I+KLLL +GA +N+      GI+PL+ A        + V+
Sbjct: 68  NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA--PDNNGITPLLYAISKKSNSYSIVE 125

Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG 223
            LLD G+++N                                   +   G   L      
Sbjct: 126 YLLDNGANVNI----------------------------------KNSDGENLLHLYLES 151

Query: 224 GYV--EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKG 281
             +  ++ ++L+DKG D+N              A ++     V  LLS G  + +K+  G
Sbjct: 152 NKIDLKILKLLIDKGVDIN--------------AKNR-----VNYLLSYGVPINIKDVYG 192

Query: 282 NSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP 341
            +PL  A    +   V+ L   GA+ +  +    + L  A    + +  + ++N+    P
Sbjct: 193 FTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN---GP 249

Query: 342 SDQEMTRYIQTVNDKEL 358
           S + +   +    DK+L
Sbjct: 250 SIKTIIETLLYFKDKDL 266

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 3/92 (3%)

Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           L LAA NG+   VKLLL+ G+D+N     + +TAL LA   G  E+V LLL+  A+V  +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLG---DTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
            K G T L  AA  G +E+ ++LL+ GAD+N 
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINL 89

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.9 bits (239), Expect = 1e-23
 Identities = 45/90 (50%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 9   SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
           ++  T L LA   GH E+V+LLL +GAD+  RDK G TPL LAA  G+  VV +LL H A
Sbjct: 38  NDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97

Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLL 98
           D+ A+ ++   TPL LA   G  EVV+LLL
Sbjct: 98  DVNAR-DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score =  102 bits (256), Expect = 3e-23
 Identities = 80/252 (31%), Positives = 114/252 (45%), Gaps = 21/252 (8%)

Query: 84  LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSL---AASGGYVNIIKLLLTHGAEINSR 140
           L  S    E V  LL  GA+   R     TPL L    +S    +I++LLL  GA++N+ 
Sbjct: 20  LNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP 79

Query: 141 TGSKLGISPLMLAAMNGHTAAV-KLLLDMGSDINAQIETNRNTALT--LACFQGRHEVVS 197
              + G +PL L   N  T  V KLL+  G+D+NA+ +    T L   L+ F    +V+ 
Sbjct: 80  --ERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK-VGRTPLHVYLSGFNINPKVIR 136

Query: 198 LLLDRKANVEHRAKTGLTPLMEAA----SGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
           LLL + A+V      G+TPL  A         VE+ R+L+D GADV A  V     + L 
Sbjct: 137 LLLRKGADVNALDLYGMTPL--AVLLKSRNANVELLRLLIDAGADVYA--VDDRFRSLLH 192

Query: 254 IAAD--KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL--SVVELLCKHGADIDS 309
                 K   R V  L+  G      +  GN+PL   A G     S+V  L   G  I++
Sbjct: 193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252

Query: 310 QDNRKVSCLMAA 321
           ++    + L  A
Sbjct: 253 RNRYGQTPLHYA 264

Length = 471

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 93.6 bits (233), Expect = 8e-23
 Identities = 37/89 (41%), Positives = 54/89 (60%)

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           T L +AA  GH   V+LLL  GA V  K+  G +PL LAA  GHL +V+LL + GAD+++
Sbjct: 9   TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           +D    + L  A R G++  V+ ++ H A
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHGA 97

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 91.2 bits (227), Expect = 3e-22
 Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 4/95 (4%)

Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L  AA  G +E+ ++LL+KGADVN        DTAL +AA  G+   V+LLL  GA V  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           K+K GN+ L LAA  G+L +V+LL +HGADI+ +D
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 90.4 bits (225), Expect = 4e-22
 Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 3/94 (3%)

Query: 15  LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
           L LA   G+ ELV+LLL +GAD+   D    T L LAA  G+ ++V +LL H AD+ A+ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 75  ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
            +  +T L LA   G  E+V+LLL  GA+   ++
Sbjct: 59  -KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 90.0 bits (224), Expect = 6e-22
 Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L LAA  G+ ++V +LL   AD+        DT L LA   G  E+V+LLL  GA+   +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL---GDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSR 140
           +    T L LAA  G + I+KLLL HGA+IN +
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 89.6 bits (223), Expect = 7e-22
 Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 4/94 (4%)

Query: 82  LSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRT 141
           L LA   G  E+V+LLL +GA+    +    T L LAA  G + I+KLLL HGA++N++ 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
             K G + L LAA NG+   VKLLL+ G+DIN +
Sbjct: 59  --KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 97.8 bits (244), Expect = 9e-22
 Identities = 65/227 (28%), Positives = 93/227 (40%), Gaps = 30/227 (13%)

Query: 24  EELVELLLSRGADIEHRDKKGFTPLILAATAGHD-----KVVDILLNHKADMEAQSERTK 78
            ++V++LL  GADI    K   TPL   +   ++     ++V +LL + A++ A      
Sbjct: 48  IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG- 106

Query: 79  DTPLSLACSG--GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV--NIIKLLLTHG 134
            TPL  A S     Y +VE LL  GAN   +N      L L      +   I+KLL+  G
Sbjct: 107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG 166

Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE 194
            +IN++                     V  LL  G  IN   +    T L  A +    E
Sbjct: 167 VDINAKN-------------------RVNYLLSYGVPINI-KDVYGFTPLHYAVYNNNPE 206

Query: 195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
            V  LLD  AN     K G TPL  A      E+ ++LL+ G  +  
Sbjct: 207 FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 5/95 (5%)

Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
           L LAA  G + ++KLLL  GA++N         + L LAA NG+   VKLLL+ G+D+NA
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           + + + NTAL LA   G  E+V LLL+  A++  +
Sbjct: 57  KDK-DGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 85/319 (26%), Positives = 137/319 (42%), Gaps = 51/319 (15%)

Query: 25  ELVELLLSRGADIEHRDKKGFTPL-ILAATAGHD--KVVDILLNHKADMEAQSERTKDTP 81
           E V  LL+ GAD+  R + G TPL +    +      +V +LL   AD+ A  ER   TP
Sbjct: 28  EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP-ERCGFTP 86

Query: 82  L-SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN--IIKLLLTHGAEIN 138
           L     +    +V++LL+  GA+   ++    TPL +  SG  +N  +I+LLL  GA++N
Sbjct: 87  LHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVN 146

Query: 139 SRTGSKLGISPL--MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLAC--FQGRHE 194
           +      G++PL  +L + N +   ++LL+D G+D+ A ++    + L      F+ R  
Sbjct: 147 AL--DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLHHHLQSFKPRAR 203

Query: 195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRV--LLDKGADVNAPPVPSSRDTAL 252
           +V  L+    +       G TPL   A+G   +   V  LL  G  +NA           
Sbjct: 204 IVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINAR---------- 253

Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
                                    N+ G +PL  AA   +      L   GADI++  +
Sbjct: 254 -------------------------NRYGQTPLHYAAVFNNPRACRRLIALGADINAVSS 288

Query: 313 RKVSCLMAAFRKGHVKAVR 331
              + L    R  + +AVR
Sbjct: 289 DGNTPLSLMVRNNNGRAVR 307

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 88.3 bits (218), Expect = 1e-19
 Identities = 70/208 (33%), Positives = 97/208 (46%), Gaps = 12/208 (5%)

Query: 1   MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
           +   S+ + N    L L  A    EL+  L+     +  RD  G  PL  AA+ G DK+V
Sbjct: 31  LSNPSDKKLNLYLELALLPAASLSELLLKLIVDR-HLAARDLDGRLPLHSAASKGDDKIV 89

Query: 61  DILLNHKADMEAQSERTKDTPLSLACSGGR-----YEVVELLLTRGANKE---HRNVSDY 112
            +LL   AD+ A+     DTPL LA   G       EV +LLL  GA+ +    R+    
Sbjct: 90  KLLLASGADVNAKD-ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN 148

Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
           TPL  AA  G  +I++LLL  GA+ NSR     G++ L  AA NG    VKLLLD G  +
Sbjct: 149 TPLHWAALNGDADIVELLLEAGADPNSRN--SYGVTALDPAAKNGRIELVKLLLDKGLHL 206

Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLL 200
           +         A      +    + SL++
Sbjct: 207 SLLKFNLEGVANANVSKRNILNLTSLII 234

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 91.7 bits (227), Expect = 3e-19
 Identities = 98/330 (29%), Positives = 153/330 (46%), Gaps = 38/330 (11%)

Query: 26  LVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME------------AQ 73
           + E+LL  GAD+  +D    TP+  AA  G+ K+V++LL++ AD+             A 
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 74  SERTKDT--------------PLSL--ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSL 117
             +  DT               LSL  A      E   LL   G +    +    TPL  
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279

Query: 118 AASGGYVN-IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH-TAAVKLLLDMGSDINAQ 175
           A+    ++ ++  LL  GA++N++     G +PL L A NG+ T  ++ L+ +G+D+NA 
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIK--GETPLYLMAKNGYDTENIRTLIMLGADVNAA 337

Query: 176 IETNRNTALTLACFQGRH-EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
            +    T L  A    R+ ++V  LL+  ANV  R     TP+  AA    V +   LLD
Sbjct: 338 -DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLD 396

Query: 235 KGADVNAPPVPSSRDTALTIA-ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA-NGG 292
            GAD+ A  +     TAL  A         V+ L+ +GA V  KNK  ++PL  A     
Sbjct: 397 YGADIEA--LSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC 454

Query: 293 HLSVVELLCKHGADIDSQDNRKVSCLMAAF 322
            L V+E+L  +GAD+++ + +    L+ A 
Sbjct: 455 KLDVIEMLLDNGADVNAINIQNQYPLLIAL 484

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 81.9 bits (203), Expect = 5e-19
 Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           L +AA  G+   V+LLL KGA V + +   ++ L LAA  G+L +V+LL +HGAD++++D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 312 NRKVSCLMAAFRKGHVKAVRWMVNH 336
               + L  A R G+++ V+ ++ H
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 85.3 bits (210), Expect = 9e-19
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 12/205 (5%)

Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
           SK  +S L+L         +  LL + S   +     +              +  LLL  
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 203 KANVE--HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA---- 256
             +     R   G  PL  AAS G  ++ ++LL  GADVNA       DT L +AA    
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADG--DTPLHLAALNGN 118

Query: 257 -DKGHCRFVELLLSKGAQVEV---KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
             +G+    +LLL  GA ++V   +++ GN+PL  AA  G   +VELL + GAD +S+++
Sbjct: 119 PPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS 178

Query: 313 RKVSCLMAAFRKGHVKAVRWMVNHV 337
             V+ L  A + G ++ V+ +++  
Sbjct: 179 YGVTALDPAAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 4/95 (4%)

Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
           L LA   G  E+V LLL++ A+V        T L  AA  G +E+ ++LL+ GADVNA  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNA-- 56

Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN 278
                +TAL +AA  G+   V+LLL  GA + +K+
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 81.4 bits (200), Expect = 2e-17
 Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 43  KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA-CSGGRYEVVELLLTRG 101
           K     +L        ++ + L     ++  +   K   L L         + ELLL   
Sbjct: 2   KPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLI 61

Query: 102 ANKEHRNVSDY--TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
            ++           PL  AAS G   I+KLLL  GA++N++     G +PL LAA+NG+ 
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAK--DADGDTPLHLAALNGNP 119

Query: 160 -----AAVKLLLDMGS--DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT 212
                   KLLL+ G+  D+N   + + NT L  A   G  ++V LLL+  A+   R   
Sbjct: 120 PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           G+T L  AA  G +E+ ++LLDKG  ++ 
Sbjct: 180 GVTALDPAAKNGRIELVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 84.3 bits (208), Expect = 5e-17
 Identities = 84/253 (33%), Positives = 115/253 (45%), Gaps = 45/253 (17%)

Query: 26  LVELLLSRGADIEHRDKKGFTPLILAATAGHD-KVVDILLNHKADMEAQSERTKDTPLSL 84
           LV  LL RGAD+  ++ KG TPL L A  G+D + +  L+   AD+ A ++R   TPL  
Sbjct: 289 LVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQ 347

Query: 85  ACSGGRY-EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS 143
           A +  R  ++V  LL  GAN   R+  D TP+  AA    V II  LL +GA+I + +  
Sbjct: 348 ASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS-Q 406

Query: 144 KLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLA-CFQGRHEVVSLLLDR 202
           K+G                                   TAL  A C    +  V  L+DR
Sbjct: 407 KIG-----------------------------------TALHFALCGTNPYMSVKTLIDR 431

Query: 203 KANVEHRAKTGLTPLMEAASGG-YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
            ANV  + K   TPL  A      ++V  +LLD GADVNA  +       L IA    + 
Sbjct: 432 GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA--INIQNQYPLLIAL--EYH 487

Query: 262 RFVELLLSKGAQV 274
             V +LL  GA++
Sbjct: 488 GIVNILLHYGAEL 500

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 83.2 bits (206), Expect = 7e-17
 Identities = 71/290 (24%), Positives = 110/290 (37%), Gaps = 53/290 (18%)

Query: 2   DVDSETESNHDTAL-TLACAGGHEELVELLLSRGADIEHRDKKGFTPL--ILAATAGHDK 58
           DV++  E    T L          ++++LL+  GAD+  +DK G TPL   L+    + K
Sbjct: 75  DVNA-PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPK 133

Query: 59  VVDILLNHKADMEAQSERTKDTPLS--------------LACSGG--------------- 89
           V+ +LL   AD+ A       TPL+              L    G               
Sbjct: 134 VIRLLLRKGADVNALDLYGM-TPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH 192

Query: 90  --------RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL--LLTHGAEINS 139
                   R  +V  L+  G +    ++   TPL   A+G       +  LL  G  IN+
Sbjct: 193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA 252

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           R  ++ G +PL  AA+  +  A + L+ +G+DINA      NT L+L         V   
Sbjct: 253 R--NRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDG-NTPLSLMVRNNNGRAVRAA 309

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGR-----VLLDKGADVNAPPV 244
           L +  + E  A T L     A      +  R     V+L     +   P+
Sbjct: 310 LAKNPSAETVAAT-LNTASVAGGDIPSDATRLCVAKVVLRGAFSLLPEPI 358

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 81.9 bits (202), Expect = 1e-16
 Identities = 84/369 (22%), Positives = 159/369 (43%), Gaps = 60/369 (16%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           T L  A   G  ++VEL +  GADI H + K   PL+ A   G   ++ +L+++  D   
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSI 96

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
                    L + C     ++++ +L  G +   ++    T L  A   G +  IK+L  
Sbjct: 97  ---------LPIPCIEK--DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFE 145

Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
           +GA++N    +  G  P+ +A  +     +KLLL+ G+  N + + N  + L  A   G 
Sbjct: 146 YGADVNIEDDN--GCYPIHIAIKHNFFDIIKLLLEKGAYANVK-DNNGESPLHNAAEYGD 202

Query: 193 HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTAL 252
           +  + LL+D   ++ ++ K G TPL  A          ++ ++ A               
Sbjct: 203 YACIKLLIDHGNHIMNKCKNGFTPLHNA----------IIHNRSA--------------- 237

Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN-GGHLSVVELLCKHGADIDSQD 311
                      +ELL++  A +  ++  G++PL  A N    + ++++L  H ADI  +D
Sbjct: 238 -----------IELLINN-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKD 285

Query: 312 NRKVSCLMAAFRK-------GHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQE 364
           N+  + +  AF+          + A   ++    +   D +   +I+  ++KE  D  +E
Sbjct: 286 NKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLK-DSDFLEHIEIKDNKEFSDFIKE 344

Query: 365 CSMVIRVAK 373
           C+  I   K
Sbjct: 345 CNEEIEDMK 353

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 78.3 bits (192), Expect = 2e-16
 Identities = 64/203 (31%), Positives = 92/203 (45%), Gaps = 9/203 (4%)

Query: 14  ALTLACAGGHEELVELLLSRGADI--EHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
           AL L      + L+  LL   +       DKK    L LA          +L        
Sbjct: 7   ALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL 66

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA-----SGGYVNI 126
           A  +     PL  A S G  ++V+LLL  GA+   ++    TPL LAA       G + +
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 127 IKLLLTHGAEI-NSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
            KLLL  GA++  +    + G +PL  AA+NG    V+LLL+ G+D N++      TAL 
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNS-YGVTALD 185

Query: 186 LACFQGRHEVVSLLLDRKANVEH 208
            A   GR E+V LLLD+  ++  
Sbjct: 186 PAAKNGRIELVKLLLDKGLHLSL 208

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 30/60 (50%), Positives = 40/60 (66%)

Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
          + DTAL LA   G+ E+V+LLL  GAD+  +DK G T L LAA  G+ ++V +LL H AD
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 79.9 bits (197), Expect = 9e-16
 Identities = 73/276 (26%), Positives = 117/276 (42%), Gaps = 31/276 (11%)

Query: 25  ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDT---- 80
           ++V+ LL+RG ++   D +  TPL +              N     E      K +    
Sbjct: 51  DVVKSLLTRGHNVNQPDHRDLTPLHIICKEP---------NKLGMKEMIRSINKCSVFYT 101

Query: 81  --PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN--IIKLLLTHGAE 136
              +  A +    E+ +++LT           D   +   +    +   I KLLL++GA+
Sbjct: 102 LVAIKDAFNNRNVEIFKIILTNRYKNIQ--TIDLVYIDKKSKDDIIEAEITKLLLSYGAD 159

Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
           IN +   K   + L  A  N      +LLL  G+++N   +TN N+ L  A       +V
Sbjct: 160 INMKDRHKGN-TALHYATENKDQRLTELLLSYGANVNIPDKTN-NSPLHHAVKHYNKPIV 217

Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASGGYV---EVGRVLLDKGADVNAPPVPSSRD-TAL 252
            +LL+  A+ + R K G TPL    S GY    ++ ++LL+ G DVNA         TAL
Sbjct: 218 HILLENGASTDARDKCGNTPLH--ISVGYCKDYDILKLLLEHGVDVNAK--SYILGLTAL 273

Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
             +      R ++LLL  GA +   N    +PL  A
Sbjct: 274 HSSIKSE--RKLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 75/309 (24%), Positives = 139/309 (44%), Gaps = 37/309 (11%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           +P+ LA      E ++LL+  GA  + +     + L  A   G V  ++ LL  G   + 
Sbjct: 37  SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD 96

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
               K G++PL LA +      +KLL+  G+D +    T++ + L LA   G  + + LL
Sbjct: 97  -VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELL 154

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN----APPVPSSRDTALTIA 255
           +D KA ++     G TPL+ A + G + + ++LLD GA+++       V      AL  A
Sbjct: 155 IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCV-----AALCYA 209

Query: 256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV 315
            +      V L + +GA         +  +     G   ++++++C    +++S+    +
Sbjct: 210 IENNKIDIVRLFIKRGA---------DCNIMFMIEGEECTILDMICNMCTNLESE---AI 257

Query: 316 SCLMA--AFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDK-ELLDKCQECSMVIRVA 372
             L+A  A R  H K +R           D+     + T+ DK E  D  ++C + +R  
Sbjct: 258 DALIADIAIRI-HKKTIR----------RDEGFKNNMSTIEDKEEFKDVFEKCIIELRRI 306

Query: 373 KNQQAERAN 381
           K+++  + N
Sbjct: 307 KSEKIGKKN 315

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 70.7 bits (173), Expect = 6e-13
 Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 12/203 (5%)

Query: 33  RGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYE 92
           +  D+ + DKK    +I A      ++  +LL++ AD+  +     +T L  A       
Sbjct: 129 QTIDLVYIDKKSKDDIIEA------EITKLLLSYGADINMKDRHKGNTALHYATENKDQR 182

Query: 93  VVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
           + ELLL+ GAN    + ++ +PL  A       I+ +LL +GA  ++R   K G +PL +
Sbjct: 183 LTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR--DKCGNTPLHI 240

Query: 153 AAMNGHTAAV-KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAK 211
           +        + KLLL+ G D+NA+      TAL  +    R   + LLL+  A++     
Sbjct: 241 SVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSER--KLKLLLEYGADINSLNS 298

Query: 212 TGLTPLMEAASGGY-VEVGRVLL 233
             LTPL  A      + +GR+L+
Sbjct: 299 YKLTPLSSAVKQYLCINIGRILI 321

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 70.4 bits (172), Expect = 7e-13
 Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 41/232 (17%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA- 68
               AL  A   G  ++   LL  G +       G +P+ LA      + + +L+ H A 
Sbjct: 1   MDQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI 60

Query: 69  ------DMEAQ----SERTK----------------------DTPLSLACSGGRYEVVEL 96
                 D+E++     E                          TPL LA    + ++++L
Sbjct: 61  PDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKL 120

Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
           L+ RGA+ +  N   ++PL LA   G +  I+LL+ H A ++       G +PL++A   
Sbjct: 121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC--CGCTPLIIAMAK 178

Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACF---QGRHEVVSLLLDRKAN 205
           G  A  K+LLD G++I+      +N  +   C+     + ++V L + R A+
Sbjct: 179 GDIAICKMLLDSGANIDY---FGKNGCVAALCYAIENNKIDIVRLFIKRGAD 227

Length = 413

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 24/63 (38%), Positives = 43/63 (68%)

Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
            +++ G +PL LAA+ GHL VV+LL ++GAD++++DN   + L  A + GH++ V+ ++ 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 336 HVA 338
             A
Sbjct: 62  KGA 64

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%)

Query: 194 EVVSLLLDRKANVEHR---AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
           E V  LL   A+V  R    KT L   +  +S    ++ R+LL+ GADVNAP       T
Sbjct: 28  EEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP--ERCGFT 85

Query: 251 ALTIAADKGHC--------RFVELLLSKGAQVEVKNKKGNSPL--WLAANGGHLSVVELL 300
            L       H           ++LL+  GA V  K+K G +PL  +L+    +  V+ LL
Sbjct: 86  PL-------HLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLL 138

Query: 301 CKHGADIDSQDNRKVSCLMAAFRKGH---VKAVRWMVNHVA 338
            + GAD+++ D   ++ L A   K     V+ +R +++  A
Sbjct: 139 LRKGADVNALDLYGMTPL-AVLLKSRNANVELLRLLIDAGA 178

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 17/134 (12%)

Query: 22  GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHD--KVVDILLNHKADMEAQSE---- 75
               +VE LL  GA++  ++  G   L L   +     K++ +L++   D+ A++     
Sbjct: 119 NSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYL 178

Query: 76  -------RTKD----TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
                    KD    TPL  A      E V+ LL  GAN    N    TPL +A      
Sbjct: 179 LSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNK 238

Query: 125 NIIKLLLTHGAEIN 138
            I KLLL +G  I 
Sbjct: 239 EIFKLLLNNGPSIK 252

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 66.9 bits (163), Expect = 1e-11
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 13/190 (6%)

Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206
            +PL+ A  +G    V+L +  G+DIN  I T     L  A   G H+++ LL+D   + 
Sbjct: 36  TTPLIDAIRSGDAKIVELFIKHGADIN-HINTKIPHPLLTAIKIGAHDIIKLLIDNGVD- 93

Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
                T + P+         ++ + +LD G DVN         T L  A  KG    +++
Sbjct: 94  -----TSILPIPCIEK----DMIKTILDCGIDVNIKDAELK--TFLHYAIKKGDLESIKM 142

Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           L   GA V +++  G  P+ +A       +++LL + GA  + +DN   S L  A   G 
Sbjct: 143 LFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGD 202

Query: 327 VKAVRWMVNH 336
              ++ +++H
Sbjct: 203 YACIKLLIDH 212

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 43/192 (22%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           D++ +     +TAL  A     + L ELLLS GA++   D                    
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD-------------------- 198

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
                         +T ++PL  A       +V +LL  GA+ + R+    TPL ++   
Sbjct: 199 --------------KTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV-- 242

Query: 122 GYV---NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET 178
           GY    +I+KLLL HG ++N+++   LG++ L  +  +     +KLLL+ G+DIN+ + +
Sbjct: 243 GYCKDYDILKLLLEHGVDVNAKS-YILGLTALHSSIKS--ERKLKLLLEYGADINS-LNS 298

Query: 179 NRNTALTLACFQ 190
            + T L+ A  Q
Sbjct: 299 YKLTPLSSAVKQ 310

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 65/231 (28%), Positives = 105/231 (45%), Gaps = 41/231 (17%)

Query: 12  DTALTLACAGGHE-ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
           +T L L    G++ E +  L+  GAD+   D+   TPL  A+T                 
Sbjct: 308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL---------------- 351

Query: 71  EAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
               +R KD  ++             LL  GAN   R+  D TP+  AA    V II  L
Sbjct: 352 ----DRNKDIVIT-------------LLELGANVNARDYCDKTPIHYAAVRNNVVIINTL 394

Query: 131 LTHGAEINSRTGSKLGIS-PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
           L +GA+I + +  K+G +    L   N +  +VK L+D G+++N++   + +T L  AC 
Sbjct: 395 LDYGADIEALS-QKIGTALHFALCGTNPYM-SVKTLIDRGANVNSK-NKDLSTPLHYACK 451

Query: 190 QG-RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
           +  + +V+ +LLD  A+V         PL+ A    Y  +  +LL  GA++
Sbjct: 452 KNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL--EYHGIVNILLHYGAEL 500

Length = 682

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 64.4 bits (157), Expect = 8e-11
 Identities = 67/271 (24%), Positives = 121/271 (44%), Gaps = 34/271 (12%)

Query: 92  EVVELLLTRGANKEHRNVSDYTPL------SLAASGGYVNIIKLLLTHGAEINSRTGSKL 145
           ++V+LL+  GA+  ++   + TPL          S     I+KLLL  GA+IN +T +  
Sbjct: 51  KIVKLLIDNGADVNYKGYIE-TPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFN-- 107

Query: 146 GISPLMLAAMNGHTAAV---KLLLDMGSDINAQIETNRNTALTLACFQG---RHEVVSLL 199
           G+SP++    N +       + LL  G ++N  ++ +R   L     +    + +V+ +L
Sbjct: 108 GVSPIVCFIYNSNINNCDMLRFLLSKGINVN-DVKNSRGYNLLHMYLESFSVKKDVIKIL 166

Query: 200 LDRKANV-EHRAKTGLTP----LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI 254
           L    N+ E  +  GLTP    L        ++V + L+ KG ++      S  ++ L  
Sbjct: 167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGS--ESVLES 224

Query: 255 AAD------KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
             D      K   + +  +L K  ++  K+KKG +PL ++A   +      L K G DI 
Sbjct: 225 FLDNNKILSKKEFKVLNFIL-KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIY 283

Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
           +      + L  A + G++     M+N + Q
Sbjct: 284 NVSKDGDTVLTYAIKHGNI----DMLNRILQ 310

Length = 494

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 56/228 (24%), Positives = 102/228 (44%), Gaps = 16/228 (7%)

Query: 91  YEVVELLLTRGANKEHR----NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG 146
           YE +   +    + E+     ++  + PL  A     ++++K LLT G  +N +   +  
Sbjct: 13  YETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVN-QPDHR-D 70

Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV-SLLLDRKAN 205
           ++PL +     +   +K ++     IN         A+  A      E+   +L +R  N
Sbjct: 71  LTPLHIICKEPNKLGMKEMI---RSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKN 127

Query: 206 VEHRAKTGLTPLMEAASGGYVE--VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF 263
           ++      L  + + +    +E  + ++LL  GAD+N        +TAL  A +    R 
Sbjct: 128 IQ---TIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKD-RHKGNTALHYATENKDQRL 183

Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
            ELLLS GA V + +K  NSPL  A    +  +V +L ++GA  D++D
Sbjct: 184 TELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD 231

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 23/54 (42%), Positives = 31/54 (57%)

Query: 11 HDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
            TAL  A   G  ELV+ LL +G DI   D+ G T L +AA  G+ +V+ +LL
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 61.0 bits (148), Expect = 1e-09
 Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 5/181 (2%)

Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
             + N  + L    + G+  L+E LL    D +  D KG TPL +AA+ G++  V +LL 
Sbjct: 520 HDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLK 579

Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
           H  ++  + +   +T L  A S   +++  +L    +  +     D   L  AA    + 
Sbjct: 580 HACNVHIR-DANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL--LCTAAKRNDLT 636

Query: 126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
            +K LL  G  ++S      G + L +A    H   V+LL+  G+D++     +  +   
Sbjct: 637 AMKELLKQGLNVDSE--DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTE 694

Query: 186 L 186
           L
Sbjct: 695 L 695

Length = 823

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 61.3 bits (148), Expect = 1e-09
 Identities = 52/232 (22%), Positives = 108/232 (46%), Gaps = 17/232 (7%)

Query: 345  EMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 404
            +  +  +     + L K +E        K ++A++A ++ N+ L +       EE+K+A 
Sbjct: 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK------AEEAKKAE 1590

Query: 405  QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
            +AR  E  K  + EKK +  +A + EE  I+  + ++AE   K    L ++   EK + E
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE 1650

Query: 465  SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE--------ET 516
              + A+   + +  ++  + +E+K+KA E ++ EE+E +  E   +  EE        + 
Sbjct: 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKK 1710

Query: 517  EENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKL 568
            E  +   +   +   EE     +   +A   + E K  A  +++ +++KKK+
Sbjct: 1711 EAEEKKKAEELKKAEEENKIKAE---EAKKEAEEDKKKAEEAKKDEEEKKKI 1759

Length = 2084

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.6 bits (127), Expect = 3e-09
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLL 200
           + L  AA++G    VK LL+ G DIN   E + NTAL +A   G  EV+ LLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 59.8 bits (144), Expect = 3e-09
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 12/203 (5%)

Query: 375  QQAERANKNANILLEELD-MEKWREESKRAAQARK-RERKKQKKLEKKEEKRKAMEEEEE 432
            ++A+ A K A    ++ D  +K  EE+K+AA+A K        + E  EEK +A E+++E
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374

Query: 433  VIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE----KKEEK 488
                   ++A+ A K A    +  + +K  EE K+ A   K+    +KK +    K EEK
Sbjct: 1375 ----EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK 1430

Query: 489  RKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDAN--SQASC 546
            +KA E +++ EE  +  E + +  E +  E     +   +   E      +A    +A  
Sbjct: 1431 KKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490

Query: 547  SSNEVKTAAPNSRRKDKKKKKLD 569
             + E K  A  +++  + KKK D
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKAD 1513

Length = 2084

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 58.5 bits (141), Expect = 4e-09
 Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 4/128 (3%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           T L LA      ++++LL++RGAD +  +   F+PL LA   G  K +++L++HKA ++ 
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI 163

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEH--RNVSDYTPLSLAASGGYVNIIKLL 130
           + +    TPL +A + G   + ++LL  GAN ++  +N      L  A     ++I++L 
Sbjct: 164 E-DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKN-GCVAALCYAIENNKIDIVRLF 221

Query: 131 LTHGAEIN 138
           +  GA+ N
Sbjct: 222 IKRGADCN 229

Length = 413

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
           G + L  AA  G L +V+ L + G DI+  D    + L  A   G+++ ++ ++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL 268
           G T L +AA  G +E+ + LL+KG D+N        +TAL IAA+ G+   ++LLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINR--TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 58.3 bits (141), Expect = 7e-09
 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 17/198 (8%)

Query: 123 YVNIIKLLLTHGAEI------------NSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
            V I+K  L H  E+                      S L+  A  G+ A ++ LL    
Sbjct: 490 NVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPNMASNLLTVASTGNAALLEELLKAKL 549

Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230
           D +      R T L +A  +G  + V +LL    NV  R   G T L  A S  + ++ R
Sbjct: 550 DPDIGDSKGR-TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFR 608

Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
           +L    +  +    P +    L  AA +     ++ LL +G  V+ ++ +G + L +A  
Sbjct: 609 ILYHFASISD----PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA 664

Query: 291 GGHLSVVELLCKHGADID 308
             H+ +V LL  +GAD+D
Sbjct: 665 EDHVDMVRLLIMNGADVD 682

Length = 823

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
            T L  AA  G + ++K LL  G +IN       G + L +AA NG+   +KLLL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDED--GNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 58.2 bits (140), Expect = 9e-09
 Identities = 54/235 (22%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 334  VNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDM 393
            V    +   D E  +  +   + E + K +E  M    A+ Q A +A +       + D 
Sbjct: 1229 VKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMA-HFARRQAAIKAEEA-----RKADE 1282

Query: 394  EKWREESKRAAQARK-RERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
             K  EE K+A +A+K  E+KK  + +KK E+ K  +E ++    AK ++A+ A K A   
Sbjct: 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEA 1341

Query: 453  LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
             +  +  K   E+         E+ +  + +K+E K+KA   +++ EE+ +  E + +  
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401

Query: 513  EEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKK 567
            E++ + +++  +   + + +E     +   +A    +E K  A  +++ D+ KKK
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKA----DEAKKKAEEAKKADEAKKK 1452

Length = 2084

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 58.0 bits (140), Expect = 9e-09
 Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 4/84 (4%)

Query: 117 LAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
           LAASG  V   ++LLT GA+ N R     G +PL +A  NGH   V++LL+ G+D    +
Sbjct: 89  LAASGDAVGA-RILLTGGADPNCRDYD--GRTPLHIACANGHVQVVRVLLEFGADPTL-L 144

Query: 177 ETNRNTALTLACFQGRHEVVSLLL 200
           + +  T L LA   G  EVV LL 
Sbjct: 145 DKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 27/241 (11%)

Query: 81  PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSR 140
           PL  A      +VV+ LLTRG N    +  D TPL +         +K ++     IN  
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMI---RSINKC 96

Query: 141 TGSKLGISPLMLAAM--NGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH----- 193
               +  + + +     N +    K++L      N + +  +   L     + +      
Sbjct: 97  ---SVFYTLVAIKDAFNNRNVEIFKIIL-----TN-RYKNIQTIDLVYIDKKSKDDIIEA 147

Query: 194 EVVSLLLDRKANVEHRAK-TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTAL 252
           E+  LLL   A++  + +  G T L  A       +  +LL  GA+VN P    + ++ L
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK--TNNSPL 205

Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL---SVVELLCKHGADIDS 309
             A    +   V +LL  GA  + ++K GN+PL ++   G+     +++LL +HG D+++
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV--GYCKDYDILKLLLEHGVDVNA 263

Query: 310 Q 310
           +
Sbjct: 264 K 264

Length = 477

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 103 NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV 162
             EH + +  + L   AS G   +++ LL   A+++   G   G +PL +AA  G+   V
Sbjct: 517 GGEHDDPNMASNLLTVASTGNAALLEELLK--AKLDPDIGDSKGRTPLHIAASKGYEDCV 574

Query: 163 KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAAS 222
            +LL    +++ + + N NTAL  A     H++  +L    +  +  A   L  L  AA 
Sbjct: 575 LVLLKHACNVHIR-DANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL--LCTAAK 631

Query: 223 GGYVEVGRVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKN 278
              +   + LL +G +V++          TAL +A  + H   V LL+  GA V+  N
Sbjct: 632 RNDLTAMKELLKQGLNVDS----EDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN 685

Length = 823

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 57.1 bits (137), Expect = 2e-08
 Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 16/160 (10%)

Query: 372  AKNQQAERANKNANILLEELDMEKWREESKRAAQARKR--ERKKQKKLEKK-EEKRKAME 428
            A  ++A+ A K A    +  + +K  EE+K+A +A+K+  E KK ++ +KK EE +KA E
Sbjct: 1415 AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474

Query: 429  EEEEVIRVAK----NQQAERANKNANILLEELDMEKWREESKRAAQARK-------RERK 477
             +++     K     ++AE A K A+   +  + +K  +E+K+A +A+K        E K
Sbjct: 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534

Query: 478  KQKKLEKKEEKRKAME--EEEEEEEEVEVQEVEGEMMEEE 515
            K  + +K EEK+KA E  + EE ++  E ++ E     EE
Sbjct: 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574

Length = 2084

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 56.8 bits (137), Expect = 2e-08
 Identities = 33/79 (41%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 20  AGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD 79
           A G      +LL+ GAD   RD  G TPL +A   GH +VV +LL   AD     ++   
Sbjct: 91  ASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGK 149

Query: 80  TPLSLACSGGRYEVVELLL 98
           TPL LA   G  EVV+LL 
Sbjct: 150 TPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 58/231 (25%), Positives = 83/231 (35%), Gaps = 49/231 (21%)

Query: 15  LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM---- 70
              A    + EL ELLL+        D      L+ A +  +   V+ +L H        
Sbjct: 57  FVAAIENENLELTELLLNLSCRGAVGDT-----LLHAISLEYVDAVEAILLHLLAAFRKS 111

Query: 71  --------EAQSERTKD-TPLSLACSGGRYEVVELLLTRGAN------------KEHRNV 109
                   +  SE T   T L LA     YE+V+LLL RGA+             +  + 
Sbjct: 112 GPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS 171

Query: 110 SDYT--PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV----- 162
             +   PL+ AA  G  +I+ LL    A+I   T   LG + L L  M     A      
Sbjct: 172 FYHGESPLNAAACLGSPSIVALLSEDPADI--LTADSLGNTLLHLLVMENEFKAEYEELS 229

Query: 163 ----KLLLDMG--SDINAQIE--TNRN--TALTLACFQGRHEVVSLLLDRK 203
                  L +      + ++E   N    T L LA  +GR  +  L L  K
Sbjct: 230 CQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK 280

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 31/116 (26%)

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVV------------ 297
           T L IAA KG+   V +LL     V +++  GN+ LW A +  H  +             
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP 619

Query: 298 ----ELLC---------------KHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
               +LLC               K G ++DS+D++  + L  A  + HV  VR ++
Sbjct: 620 HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLI 675

Length = 823

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 55.3 bits (133), Expect = 6e-08
 Identities = 37/88 (42%), Positives = 46/88 (52%), Gaps = 11/88 (12%)

Query: 220 AASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVE 275
           AASG  V   R+LL  GAD      P+ RD    T L IA   GH + V +LL  GA   
Sbjct: 90  AASGDAVGA-RILLTGGAD------PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT 142

Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKH 303
           + +K G +PL LA   G   VV+LL +H
Sbjct: 143 LLDKDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 55.5 bits (133), Expect = 8e-08
 Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 18/207 (8%)

Query: 371  VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE----KKEEKRKA 426
              K ++ ++A +   I   E   +K  E+ K+A +A+K E  ++K  E    + EE +KA
Sbjct: 1646 KKKAEELKKAEEENKIKAAEE-AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704

Query: 427  ME----EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
             E    E EE  +  + ++AE  NK   I  EE   E   E+ K+A +A+K E +K+K  
Sbjct: 1705 EELKKKEAEEKKKAEELKKAEEENK---IKAEEAKKEA-EEDKKKAEEAKKDEEEKKKIA 1760

Query: 483  EKKEEKRKAMEEEEEEEEEVEVQEV----EGEMMEEETEENDMHSSGGGRGEG-EEGDSG 537
              K+E+ K  EE  +E+E V  +E+    E   ME + +  D+  +     EG +EG+  
Sbjct: 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLV 1820

Query: 538  IDANSQASCSSNEVKTAAPNSRRKDKK 564
            I+ + +   S+ +    + N + ++  
Sbjct: 1821 INDSKEMEDSAIKEVADSKNMQLEEAD 1847

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 55.1 bits (132), Expect = 8e-08
 Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 29/220 (13%)

Query: 375  QQAERANKNANILLEELDMEKWREESKRAAQARK-------RERKKQKKLEKKEEKRKA- 426
            ++AE A K A+   +  + +K  +E+K+A +A+K        E KK  + +K EEK+KA 
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549

Query: 427  ----MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
                 EE ++     K ++A++A ++ N+ L + +  K  EE++     +  E +K+ K 
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609

Query: 483  E---KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEET----------EENDMHSSGGGRG 529
            E   K EE +   EE ++ EEE +  E   +   EE           EEN + ++   + 
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669

Query: 530  EGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLD 569
              E+         +A  +  + K AA   +++ ++ KK +
Sbjct: 1670 AEEDKKKA----EEAKKAEEDEKKAAEALKKEAEEAKKAE 1705

Length = 2084

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.9 bits (115), Expect = 8e-08
 Identities = 18/33 (54%), Positives = 25/33 (75%)

Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
            GN+PL LAA  GHL VV+LL + GAD++++D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 54.8 bits (131), Expect = 1e-07
 Identities = 36/153 (23%), Positives = 78/153 (50%), Gaps = 4/153 (2%)

Query: 369  IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
            I+  + ++AE   K    L ++   EK + E  + A+   + +  ++  + +E+K+KA E
Sbjct: 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679

Query: 429  ----EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
                EE+E       ++     K A  L ++   EK + E  + A+   + + ++ K E 
Sbjct: 1680 AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739

Query: 485  KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
            +E+K+KA E +++EEE+ ++  ++ E  ++  E
Sbjct: 1740 EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772

Length = 2084

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 3/199 (1%)

Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
            +N++ E+  K     L+ L  E+   +S+     R++   ++K  E ++E +K  +E +
Sbjct: 273 KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELK 332

Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
           +     +  + E          EE + E+  +  ++  Q  +    K+K   ++      
Sbjct: 333 KEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAK 392

Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEE---NDMHSSGGGRGEGEEGDSGIDANSQASCSS 548
           ++EEE E +  E +E +  +   E EE    +         E  E               
Sbjct: 393 LKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE 452

Query: 549 NEVKTAAPNSRRKDKKKKK 567
              K A    + K + KK 
Sbjct: 453 ELEKQALKLLKDKLELKKS 471

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             TAL  AA  G    V+ LL KG  +   ++ GN+ L +AA  G+L V++LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 79  DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
            T L  A   GR E+V+ LL +G +    +    T L +AA  G + ++KLLL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 16/143 (11%)

Query: 58  KVVDILLNHKADMEAQSERTKDTPLSLACSG-----GRYEVVELLLTRGANKEHRNVSDY 112
            +V + +N  A++    +    TPL    S         ++V++L+  GA+   +N    
Sbjct: 52  DIVKLFINLGANVNGL-DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGE 110

Query: 113 TPLSLAASGGYVN---IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA---AVKLLL 166
           TPL    S GY+N   I+  ++ +GA+       K G + L +   + H      +KLLL
Sbjct: 111 TPLYCLLSNGYINNLEILLFMIENGADTTLL--DKDGFTMLQVYLQSNHHIDIEIIKLLL 168

Query: 167 DMGSDINAQIETNRNTALTLACF 189
           + G DIN     N+    TL C+
Sbjct: 169 EKGVDIN--THNNKEKYDTLHCY 189

Length = 489

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 5/90 (5%)

Query: 91  YEVVELLLTRGANKE----HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG 146
            ++++ +L  GA+ E        S   PL  A      +  KLL+ +GA++N R   +  
Sbjct: 46  TDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN-RYAEEAK 104

Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
           I+PL ++ ++G    +++LL  G+DIN Q 
Sbjct: 105 ITPLYISVLHGCLKCLEILLSYGADINIQT 134

Length = 300

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 53.2 bits (127), Expect = 4e-07
 Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 7/202 (3%)

Query: 372  AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
            A  ++ E A K A+   ++ + +K  +E+K+ A+  K   KK  +L+K    +K  +E +
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK---KKADELKKAAAAKKKADEAK 1424

Query: 432  EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR--ERKKQKKLEKKEEKR 489
            +  +  + ++A+ A K A    +  + +K  EE+K+A +A+K+  E KK  + +KK E+ 
Sbjct: 1425 K--KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482

Query: 490  KAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSN 549
            K  +E +++ EE + +  E +   E  ++ D         + +E     +A         
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542

Query: 550  EVKTAAPNSRRKDKKKKKLDMR 571
            E K  A   ++ ++ KK  + +
Sbjct: 1543 EEKKKADELKKAEELKKAEEKK 1564

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 19/215 (8%)

Query: 373  KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK--EEKRKAME-- 428
              + AE A   A    +E    +  EE   AA+ +K E KK+    KK  EEK+KA E  
Sbjct: 1341 AKKAAEAAKAEAEAAADEA---EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397

Query: 429  --EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE--- 483
               EE+  +  + ++A  A K A+   ++ + +K  +E+K+ A+  K+  + +KK E   
Sbjct: 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457

Query: 484  -------KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDS 536
                   K EE +KA E +++ EE  +  E + +  E + + ++   +   + + +E   
Sbjct: 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517

Query: 537  GIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMR 571
              +A         E    A  +++ ++KKK  +++
Sbjct: 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.8 bits (126), Expect = 5e-07
 Identities = 44/168 (26%), Positives = 86/168 (51%), Gaps = 5/168 (2%)

Query: 357  ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 416
            E L K +E    +   K ++AE   K   +   E + +    E  + A+  K++ ++ KK
Sbjct: 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682

Query: 417  LE----KKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR 472
             E    K  E  K   EE +     K ++AE   K   +   E + +   EE+K+ A+  
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742

Query: 473  KRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
            K++ ++ KK +++E+K+ A  ++EEE++  E+++ +  ++EEE +E D
Sbjct: 1743 KKKAEEAKK-DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789

Length = 2084

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEHRDK 42
          + +T L LA   GH E+V+LLL  GAD+  RDK
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 52.5 bits (125), Expect = 6e-07
 Identities = 49/197 (24%), Positives = 98/197 (49%), Gaps = 10/197 (5%)

Query: 375  QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK---EEKRKAMEEEE 431
            ++AE A K      +  + +K  E  K+A +A+K +  K+K  E K   +E +KA E ++
Sbjct: 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510

Query: 432  EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER-KKQKKLEKKEEKRK 490
            +     K ++A++A++      ++ +  K  +E+K+A + +K +  KK ++L+K EEK+K
Sbjct: 1511 KADEAKKAEEAKKADE-----AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565

Query: 491  AMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNE 550
            A EE ++ EE+  +   + E  ++  E            E +          +A   + E
Sbjct: 1566 A-EEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624

Query: 551  VKTAAPNSRRKDKKKKK 567
            +K A    ++ ++ KKK
Sbjct: 1625 LKKAEEEKKKVEQLKKK 1641

Length = 2084

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 51.8 bits (124), Expect = 9e-07
 Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 5/163 (3%)

Query: 79  DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
            + L    S G   ++E LL    + +  +    TPL +AAS GY + + +LL H   ++
Sbjct: 526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH 585

Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSL 198
            R  +  G + L  A    H    ++L    S  +     +    L  A  +     +  
Sbjct: 586 IRDAN--GNTALWNAISAKHHKIFRILYHFASISDPHAAGD---LLCTAAKRNDLTAMKE 640

Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           LL +  NV+     G T L  A +  +V++ R+L+  GADV+ 
Sbjct: 641 LLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
           G +PL LAA NGH   VKLLL+ G+D+NA+
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLA 187
           LL HG    + T    G +PL LAA  G    V+ LL  G D+N + +++  TAL LA
Sbjct: 1   LLEHGPIDLNATDGN-GNTPLHLAAKYGALELVQWLLKPGVDLNLR-DSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 26/56 (46%)

Query: 63  LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
           LL H       ++   +TPL LA   G  E+V+ LL  G +   R+    T L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)

Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
           +K   KK+ KLE+K+ +R+  E EEE     K  + +R  +      +E +  +   E K
Sbjct: 1   KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGE-----RKEEEELEEEREKK 55

Query: 467 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
           +  + RK   ++ +K +++ EK K+    EEE  +    + E
Sbjct: 56  KEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEE 97

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
          G T L  AA +G  ++V  LL    D+    E   +T L +A   G  EV++LLL
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINRTDED-GNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 50.9 bits (122), Expect = 2e-06
 Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 21/184 (11%)

Query: 356 KELLDKCQECSMVIRVAKNQ------QAERANKNANILLEELDME------KWREESKRA 403
           +   +  +    ++   + Q      QAE+A +   +  E  ++E      K +E  K  
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKEL 241

Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE--------E 455
            +  +   + +++LE+ +E+ +  E+E E ++    +  E   +    LLE        E
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301

Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM-EEEEEEEEEVEVQEVEGEMMEE 514
            ++   RE  +      +   ++ ++L++K E  K   EE E   EE+E    E E  +E
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361

Query: 515 ETEE 518
           E EE
Sbjct: 362 ELEE 365

Length = 1163

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 14/174 (8%)

Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD 457
            ES +  +  K + K++KK +K++ K +  + + +     K    E+  +          
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK--------- 150

Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
            EK  EE +   + +KRER + K   KK  K+K   +++E  EE + ++   E ++ + E
Sbjct: 151 -EKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPE 209

Query: 518 ENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKLDMR 571
           E D++       E EE D      + +    +E + ++  SRR     KK D  
Sbjct: 210 EPDVN----EEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPS 259

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
           ++K ++K EKKE     ++EE E     K              L+E + E   E      
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEES-GKRDVILEDESAEPTGLDEDEDED--EPKPSGE 279

Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
           ++   E  ++K+ EK++  +K ME+E+E+EE   V E   E  E E  E  
Sbjct: 280 RSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPP 330

This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif. Length = 427

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 3/136 (2%)

Query: 385 NILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAER 444
            I   E ++E  R   +   +  ++ +  +++LEK EEK + +E E E +   KN+ A+ 
Sbjct: 299 EIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKL 358

Query: 445 ANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE--EEEEEEEV 502
             +    L E L+ E  +E  K   + ++ E   Q+  E+  E   A+EE  EE EE E 
Sbjct: 359 LEERLKELEERLE-ELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEK 417

Query: 503 EVQEVEGEMMEEETEE 518
           E++E+E E+ E E E 
Sbjct: 418 ELEELERELEELEEEI 433

Length = 908

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 49.8 bits (118), Expect = 4e-06
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 14/186 (7%)

Query: 398  EESKRAAQARK-RERKKQKKLEKKEEKRKAMEE---------EEEVIRVAKNQQAERANK 447
            EE ++A +ARK  + KK + ++K EE +K  EE          EE+ +  + + A  A +
Sbjct: 1209 EEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARR 1268

Query: 448  NANILLEE---LDMEKWREESKRAAQARK-RERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
             A I  EE    D  K  EE K+A +A+K  E+KK  + +KK E+ K  +E +++ EE +
Sbjct: 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328

Query: 504  VQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDK 563
             +    +   EE ++    +        +E ++  +    A     E K  A  +++K +
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388

Query: 564  KKKKLD 569
            +KKK D
Sbjct: 1389 EKKKAD 1394

Length = 2084

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 49.4 bits (119), Expect = 4e-06
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 368 VIRVAKNQQAERANKNANIL---LEELDME---KWRE-ESKRAAQARKRERKKQKKLEKK 420
           +I  AK    E   K  N L   LEEL+ E   K  E E+      + +E  ++KK + +
Sbjct: 503 IIEEAKKLIGEDKEK-LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQ 561

Query: 421 EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
           EE+ K +EE E+  + A  +  + A++    L +         ++    +ARKR  K  +
Sbjct: 562 EEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANE 621

Query: 481 KLEKKEEKRKAMEEEEEEEEEVEV 504
           K EKK++K+K  +EE +  +EV+ 
Sbjct: 622 KKEKKKKKQKEKQEELKVGDEVKY 645

Length = 782

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 49.4 bits (117), Expect = 5e-06
 Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 4/166 (2%)

Query: 343  DQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKR 402
            +Q   +  +     E L K +E + +    + ++AE   K A    +  + EK   E+ +
Sbjct: 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK 1695

Query: 403  AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
                  ++ ++ KK E +E+K+    ++ E     K ++A++  +      EE   ++  
Sbjct: 1696 KEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE-- 1753

Query: 463  EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
            EE K+ A  +K E KK +++ K  EK   +EEE +EE+E    EV+
Sbjct: 1754 EEKKKIAHLKKEEEKKAEEIRK--EKEAVIEEELDEEDEKRRMEVD 1797

Length = 2084

>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 22/156 (14%)

Query: 393 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEVIRVAKNQQAERANKNA-- 449
           M++   +SK      K ER+K K  E+ E+ R+ ++++ ++++ + +  +          
Sbjct: 179 MKEVIAKSKF----YKAERQKAK--EEDEDLREELDDDFKDLMSLLRTVKPPPKPPMTPE 232

Query: 450 ------NILLEELDMEKWR----EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEE 499
                 +  + EL  ++ R    + +K   +  K E ++ KKLE +  +R  M  EEE++
Sbjct: 233 EKDDEYDQRVRELTFDR-RAQPTDRTKTEEELAKEEAERLKKLEAERLRR--MRGEEEDD 289

Query: 500 EEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGD 535
           EE E  +   + +++E E +D  + G G+GE +E +
Sbjct: 290 EEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEE 325

Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production. Length = 809

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.4 bits (103), Expect = 6e-06
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL 233
             TAL  A   GR E+V  LL++  ++    + G T L  AA  G +EV ++LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           G TPL  AA  G++EV ++LL+ GADVNA
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 36/220 (16%)

Query: 123 YVNIIKLLLTHGAEINS-RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ--IETN 179
             N ++ LL  G ++N    G+   I  L L   +     VKLL+D G+D+N +  IET 
Sbjct: 15  DKNALEFLLRTGFDVNEEYRGNS--ILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETP 72

Query: 180 -----RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLM---EAASGGYVEVGRV 231
                RN  +T    +   ++V LLL   A++  +   G++P++     ++    ++ R 
Sbjct: 73  LCAVLRNREITSNKIK---KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRF 129

Query: 232 LLDKGADVNAPPVPSSRDTAL--------TIAADKGHCRFVELLLSKGAQV-EVKNKKGN 282
           LL KG +VN   V +SR   L        ++  D      +++LLS G  + E  +  G 
Sbjct: 130 LLSKGINVND--VKNSRGYNLLHMYLESFSVKKD-----VIKILLSFGVNLFEKTSLYGL 182

Query: 283 SPLWL----AANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           +P+ +      +   + V++ L K G +I++ +N   S L
Sbjct: 183 TPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVL 222

Length = 494

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 30 LLSRG-ADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA 85
          LL  G  D+   D  G TPL LAA  G  ++V  LL    D+  +      T L LA
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDG-LTALDLA 56

Length = 56

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 14/182 (7%)

Query: 356 KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREE-SKRAAQARKRERKKQ 414
           + L D  +E    +   + Q  E   + A +  E   ++   EE  +   +  +   + Q
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757

Query: 415 KKLEKKEEKRKAMEEE--------EEVIRVAKNQQAERANKNANILLEELDMEKWREE-- 464
           ++LE+ EE+ +++EE         EE+    +  Q E       +   E  ++    E  
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817

Query: 465 --SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMH 522
              +R  +  +   + ++++E+ EEK   +EEE EE E+ E++E++ E+ E E E+ ++ 
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK-ELEELKEELEELEAEKEELE 876

Query: 523 SS 524
             
Sbjct: 877 DE 878

Length = 1163

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINA 174
           G +PL LAA NG+   VKLLL+ G+DINA
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 71/256 (27%), Positives = 120/256 (46%), Gaps = 28/256 (10%)

Query: 21  GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDT 80
           G  E  VE LL RG      D  G  PL +A+   ++++V +LL H AD  A  ++ K T
Sbjct: 49  GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHK-T 107

Query: 81  PLSLACSGGRYEVVE---LLLTRGANKEHRNVSDY--TPLSLAASGGYVNIIKLLLTHGA 135
           PL    SG   EV+E   LL+  GA K + +V +    PL LA +     + K +++ G 
Sbjct: 108 PLYY-LSGTDDEVIERINLLVQYGA-KINNSVDEEGCGPL-LACTDPSERVFKKIMSIGF 164

Query: 136 EINSRTGSKLGISPL--MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
           E  +R   K G + +   L + N   + +  ++ +G    ++ + + NT L + C +   
Sbjct: 165 E--ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVK 221

Query: 194 --EVVSLLLDRKANVEHRAKTG---LTPLMEAASGGY-----VEVGRVLLDKGADVNAPP 243
             ++++LLL    +V  + K G   LT L++  S  +     +    V+ D+  ++    
Sbjct: 222 NVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNIC--- 277

Query: 244 VPSSRDTALTIAADKG 259
           +   RD  L I  DKG
Sbjct: 278 IFYDRDDVLEIINDKG 293

Length = 446

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 154 AMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213
           A +G     ++LL  G+D N + + +  T L +AC  G  +VV +LL+  A+     K G
Sbjct: 90  AASGDAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDG 148

Query: 214 LTPLMEAASGGYVEVGRVLL-----DKGADVNAPP 243
            TPL  A   G+ EV ++L            NA P
Sbjct: 149 KTPLELAEENGFREVVQLLSRHSQCHFELGANAKP 183

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRT 141
            TPL LAA  G++ ++KLLL  GA++N+R 
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 57/298 (19%), Positives = 104/298 (34%), Gaps = 15/298 (5%)

Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
           V   K A   A  V  S          K      EL L       + +     PL   A 
Sbjct: 539 VANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPA-RTFVLLDPLLKLPLKSIAV 597

Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYI 350
                 + L   + A +++ ++ K + ++    K                   +E     
Sbjct: 598 LEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLE------SAKAKESGLRK 651

Query: 351 QTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 410
               ++ L +K +  + +  + K   AE+  +         +    R+E  +  + R +E
Sbjct: 652 GVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKE 711

Query: 411 RKKQKKLEKKEEKRKAMEEEEEVI-RVAKNQQAERANKNANIL------LEELDMEKWRE 463
             K+ KLEK+E     ++E ++ I    K  + +   K            EE + +    
Sbjct: 712 ELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELS 771

Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
             ++     + + +K K  E+KEEK KA EEE    EE E++E    + EE+      
Sbjct: 772 LKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEE-ELKEEAELLEEEQLLIEQE 828

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 26/54 (48%), Positives = 32/54 (59%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
           T L +ACA GH ++V +LL  GAD    DK G TPL LA   G  +VV +L  H
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 38/181 (20%), Positives = 83/181 (45%), Gaps = 9/181 (4%)

Query: 350 IQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR 409
           +     +E  DK  E   ++     ++ E   K+     EE + +      ++     + 
Sbjct: 723 LLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEE 782

Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDME---------K 460
           + +K K  E+KEEK KA EEE   +     ++AE   +   ++ +E  ++         +
Sbjct: 783 KTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALE 842

Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
            +EE K    A +   + ++++ K+E  ++ + +EEE EE+    E+E +  +E+ E+ +
Sbjct: 843 LKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKE 902

Query: 521 M 521
           +
Sbjct: 903 L 903

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 36/141 (25%), Positives = 75/141 (53%), Gaps = 7/141 (4%)

Query: 384 ANILLEELDMEKWREESKRAA-----QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAK 438
             I  +E + E+ REE  +       +A + E ++ ++ E+KEEK + +         A+
Sbjct: 136 ERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAE 195

Query: 439 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK-QKKLEKKEEKRKAMEEEEE 497
           +++ E     A++  EE +  K R++ K  A+ R+R++++ Q+  E++ E+++   +EE 
Sbjct: 196 DEREELDELRADLYQEEYE-RKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEER 254

Query: 498 EEEEVEVQEVEGEMMEEETEE 518
            EEE E + +  +  E+E  E
Sbjct: 255 AEEEAERERMLEKQAEDEELE 275

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 5/113 (4%)

Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
           + VG +L D G + + P + S+    LT+A+  G+   +E LL      ++ + KG +PL
Sbjct: 507 LNVGDLLGDNGGEHDDPNMASN---LLTVAS-TGNAALLEELLKAKLDPDIGDSKGRTPL 562

Query: 286 WLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
            +AA+ G+   V +L KH  ++  +D    + L  A    H K +  ++ H A
Sbjct: 563 HIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK-IFRILYHFA 614

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 43 KGFTPLILAATAGHDKVVDILLNHKADMEAQ 73
           G TPL LAA  GH +VV +LL   AD+ A+
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNAR 31

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 45.9 bits (110), Expect = 4e-05
 Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 23/153 (15%)

Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
            + + A + A  +LEE             A+      KK+  LE KEE  K   E E+ +
Sbjct: 31  AKIKEAEEEAKRILEE-------------AKKEAEAIKKEALLEAKEEIHKLRNEFEKEL 77

Query: 435 RVAKN--QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM 492
           R  +N  Q+ E+        L+   +E   +  +   +  K   +KQ++LEKKEE+ + +
Sbjct: 78  RERRNELQKLEKRLLQKEENLDR-KLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136

Query: 493 EEEEEEEEEV-------EVQEVEGEMMEEETEE 518
            EE+ +E E        E +E+  E +EEE   
Sbjct: 137 IEEQLQELERISGLTAEEAKEILLEKVEEEARH 169

Length = 520

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 2  DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRD 41
          DV++  + + +TAL LA   G+ E+V+LLL  GADI  +D
Sbjct: 53 DVNA-KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 79  DTPLSLACSGGRYEVVELLLTRGANKEHRN 108
           +TPL LA   G  EVV+LLL  GA+   R+
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 96  LLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLA 153
           LL     +    + +  TPL LAA  G + +++ LL  G ++N R     G++ L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD--GLTALDLA 56

Length = 56

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 9/171 (5%)

Query: 359 LDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE 418
           L++     + +  A  ++ E   +    LLEEL+  K + + ++  +  ++   + ++L+
Sbjct: 513 LEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELK 572

Query: 419 KKEEKRKAMEEEEEVIRVAKNQQAERANKNANI---------LLEELDMEKWREESKRAA 469
           +  E+ + +   +E +   + +  E   K   +         LL+ L++ +   E + A 
Sbjct: 573 ELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAE 632

Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
           +  + E +K     + EE  +A  EE EE+ E    E+  E+   E EE  
Sbjct: 633 EELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQL 683

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 5e-05
 Identities = 34/187 (18%), Positives = 67/187 (35%), Gaps = 19/187 (10%)

Query: 356 KELLDKCQECSMVIRVAKNQQAERAN-----------KNANILLEELDMEKWREESKRAA 404
           +EL +K  E    +   + +  E               +  I     D+ +   E ++  
Sbjct: 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746

Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEE-------EVIRVAKNQQAERANKNANILLEELD 457
           +   +  K+  +LE + E+ +   EE        E        Q E+  +    L E LD
Sbjct: 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD 806

Query: 458 MEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEE-EEEEVEVQEVEGEMMEEET 516
             +          A  RER +  +      +R+  + EE+ EE   +++ +  E+ E E 
Sbjct: 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEE 866

Query: 517 EENDMHS 523
              ++ S
Sbjct: 867 LIEELES 873

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 19/29 (65%), Positives = 22/29 (75%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINA 174
           G +PL LAA NG+   VKLLLD G+DINA
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 50  LAATAGHDKV-VDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
           LAA+   D V   ILL   AD   + +    TPL +AC+ G  +VV +LL  GA+    +
Sbjct: 89  LAASG--DAVGARILLTGGADPNCR-DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 109 VSDYTPLSLAASGGYVNIIKLLLTHGAE 136
               TPL LA   G+  +++LL  H   
Sbjct: 146 KDGKTPLELAEENGFREVVQLLSRHSQC 173

Length = 664

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 45.3 bits (108), Expect = 9e-05
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 35/135 (25%)

Query: 397 REESKRAAQARKR--------ERKKQKKLEK---KEEKRKAMEEEE-----EVIRVAKNQ 440
            +E K+A +A+ R        ER+K  +  +     E R A +++        ++  K  
Sbjct: 442 EQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAA 501

Query: 441 QAERANKNANILLEELDMEKWREESKRAAQARKRE-------------------RKKQKK 481
             +     A    +   +   RE  K  A+AR+ E                   R K KK
Sbjct: 502 ATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAKAKK 561

Query: 482 LEKKEEKRKAMEEEE 496
             ++    +A EE +
Sbjct: 562 AAQQAANAEAEEEVD 576

Length = 695

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 44.8 bits (106), Expect = 9e-05
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 14/146 (9%)

Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE----KKEEKR 424
           +     +  ++         E        + +K+A QA K+  +KQK+ E    K+  + 
Sbjct: 73  LEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEA 132

Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 484
           KA  E E     A+ +  E A K A    EE    K   E+K+ A   K++ + + K  K
Sbjct: 133 KAKAEAE-----AEKKAKEEAKKQA----EEEAKAKAAAEAKKKAAEAKKKAEAEAK-AK 182

Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGE 510
            E K KA  EE + + E    +   E
Sbjct: 183 AEAKAKAKAEEAKAKAEAAKAKAAAE 208

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 19/141 (13%)

Query: 48  LILAATAGHDKVV-DILLNHKADMEAQSERTKDTPLSLACSGGRY-EVVELLLTRGANKE 105
            + AA  G    V   L   K       +R   + L +A       E+ ELLL       
Sbjct: 21  FLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLL-----NL 75

Query: 106 HRNVSDYTPLSLAASGGYVNIIKLLLTH----------GAEINSRTGSKL--GISPLMLA 153
               +    L  A S  YV+ ++ +L H              N +  S+   GI+ L LA
Sbjct: 76  SCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLA 135

Query: 154 AMNGHTAAVKLLLDMGSDINA 174
           A   +   VKLLL+ G+ + A
Sbjct: 136 AHRQNYEIVKLLLERGASVPA 156

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 25  ELVELLLSRGAD--IEH--RDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDT 80
           ++++ +L  GAD        +     PLI A    +D    +L+ + AD+   +E  K T
Sbjct: 47  DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT 106

Query: 81  PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
           PL ++   G  + +E+LL+ GA+   +     TP+ LA
Sbjct: 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA 144

Length = 300

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/39 (48%), Positives = 21/39 (53%)

Query: 13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILA 51
          T L LA   G  ELV+ LL  G D+  RD  G T L LA
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 2/151 (1%)

Query: 372 AKNQQAERANKNANILLEELDMEK--WREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
            + ++ +         +EEL+ E    RE  +      +   ++ ++L++K E  K   E
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340

Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
           E E +     Q      +    L E+L       E    A   +    + +  E + E  
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400

Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
           +   E E  EE +E      E ++EE +E +
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELE 431

Length = 1163

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 44.8 bits (107), Expect = 1e-04
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 24/156 (15%)

Query: 378 ERANKNANILLEELDME------KWREESKRAAQARKRE-RKKQKKLEKKEEKRKAMEEE 430
           E A K A  + +E  +E      K R E ++  + R+ E +K +K+L +KEE    ++ +
Sbjct: 45  EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE---NLDRK 101

Query: 431 EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK-----K 485
            E++   + ++ E+  K      +EL+        K+  +  +   ++ ++LE+      
Sbjct: 102 LELLE-KREEELEKKEKELEQKQQELE--------KKEEELEELIEEQLQELERISGLTA 152

Query: 486 EEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
           EE ++ + E+ EEE   E   +  E+ EE  EE D 
Sbjct: 153 EEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADK 188

Length = 520

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 10 NHDTALTLACAGGHEELVELLLSRGADIE 38
          +  T L LA   G+ E+V+LLL +GADI 
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADID 308
            G +PL LAA  G+L VV+LL   GADI+
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 23/126 (18%)

Query: 398 EESKRAAQARKRERKKQKKLEK-KEEKRKAMEEEEEVIRVA----------KNQQAE--- 443
           E    A QA+++++ ++   EK K+E+ K  EE E   R+A          K QQA    
Sbjct: 90  ENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQR 149

Query: 444 ------RANKNANILLEELDMEKWR---EESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
                  A ++A+  L      +     EE+K+  Q  + ++ KQ++ +++EE+RK  ++
Sbjct: 150 TPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKK 209

Query: 495 EEEEEE 500
           ++EEEE
Sbjct: 210 QQEEEE 215

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 6/117 (5%)

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
            +   +V+   +  L   +  AS   VE  R LL  GADVN         T L +     
Sbjct: 1   DEEDESVDIIMEAALYDYLLNASNVTVEEVRRLLAAGADVNF--RGEYGKTPLHLYLHYS 58

Query: 260 H---CRFVELLLSKGAQVEVKNKKGNSPLWL-AANGGHLSVVELLCKHGADIDSQDN 312
                  V LLL  GA V    + G +PL L   N   L V++LL K GAD++++D 
Sbjct: 59  SEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK 115

Length = 471

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 44.4 bits (104), Expect = 2e-04
 Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 29/201 (14%)

Query: 394  EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE---EEVIRVAKNQQAERANKNAN 450
            E   E   +A +A+K E  K ++  K EE +K  E+    EE  +    ++AE A K  +
Sbjct: 1091 EATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAED 1150

Query: 451  ILLEEL----------DMEKWREESKRAAQARKRER-KKQKKLEKKEEKRKA-------- 491
                E+          +  +  E++K+A  ARK E  +K ++L K E+ RKA        
Sbjct: 1151 AKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEE 1210

Query: 492  ---MEEEEEEEEEVEVQEV----EGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQA 544
                EE  + E+  + + V    E +   EE ++ +   +     + EE      A  QA
Sbjct: 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270

Query: 545  SCSSNEVKTAAPNSRRKDKKK 565
            +  + E + A    + ++KKK
Sbjct: 1271 AIKAEEARKADELKKAEEKKK 1291

Length = 2084

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 19/33 (57%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAK 211
           + NT L LA   G  EVV LLL+  A+V  R K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 6/101 (5%)

Query: 59  VVDILLNHKADMEAQ---SERTKDTPLSLACSGGRYEVVELLLTRGAN-KEHRNVSDYTP 114
           ++D +L   AD EA    SE +K  PL  A      +  +LL+  GA+   +   +  TP
Sbjct: 48  IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107

Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAM 155
           L ++   G +  +++LL++GA+IN +T     ++P+ LA M
Sbjct: 108 LYISVLHGCLKCLEILLSYGADINIQTNDM--VTPIELALM 146

Length = 300

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 13/143 (9%)

Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK------KLEKKEEKRKAMEE 429
             E          E L+  K R     + +    + ++++       LE+ EEK + +EE
Sbjct: 236 ALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEE 295

Query: 430 EEEVIRVAKNQQAERANKNANI--LLEEL-----DMEKWREESKRAAQARKRERKKQKKL 482
            E  I   + +          +  LLE+L      +EK  E+ ++     +   +++ +L
Sbjct: 296 LEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNEL 355

Query: 483 EKKEEKRKAMEEEEEEEEEVEVQ 505
            K  E+R    EE  EE E E++
Sbjct: 356 AKLLEERLKELEERLEELEKELE 378

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 33/171 (19%), Positives = 71/171 (41%), Gaps = 28/171 (16%)

Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARK--------RERKKQKKLEKKEEKRKA 426
           ++ ++        +  L+ +K +   +R A   +         E  + K  E  EE    
Sbjct: 284 EELQKELYALANEISRLEQQK-QILRERLANLERQLEELEAQLEELESKLDELAEEL-AE 341

Query: 427 MEEEEEVIRV------AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 480
           +EE+ E ++       A+ ++ E   +     LEEL+ E+      + AQ   +      
Sbjct: 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELE-EQLETLRSKVAQLELQIASLNN 400

Query: 481 KLE-----------KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEND 520
           ++E           ++E  ++ +EE  ++ EE E++E++ E+ E E E  +
Sbjct: 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 5/165 (3%)

Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
           AK  +             E    K   E+K  A+A + E+K +++ +K+ E+    +   
Sbjct: 104 AKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEA-EAEKKAKEEAKKQAEEEAKAKAAA 162

Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
           E    AK + AE   K       + + +   +  +  A+A   + K   +   K E   A
Sbjct: 163 E----AKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAA 218

Query: 492 MEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDS 536
                E E + +  E+            +      G   G E D 
Sbjct: 219 AAAAAEAERKADEAELGDIFGLASGSNAEKQGGARGNAAGSEVDK 263

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 14/130 (10%)

Query: 162 VKLLLDMGSDINAQIETNRNTAL-TLAC----FQGRHEVVSLLLDRKANVEHRAKTGLTP 216
           VKL +++G+++N  ++   +T L T+      ++   ++V +L++  A++  +   G TP
Sbjct: 54  VKLFINLGANVNG-LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETP 112

Query: 217 LMEAASGGYV---EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH---CRFVELLLSK 270
           L    S GY+   E+   +++ GAD     +     T L +     H      ++LLL K
Sbjct: 113 LYCLLSNGYINNLEILLFMIENGADTTL--LDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170

Query: 271 GAQVEVKNKK 280
           G  +   N K
Sbjct: 171 GVDINTHNNK 180

Length = 489

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 165 LLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
           LL+ G       + N NT L LA   G  E+V  LL    ++  R   GLT L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 15/135 (11%)

Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
            K   + ++  +  K +R  ++K ++KE+K +   + EE  +  + +   R  K      
Sbjct: 124 PKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKK------ 177

Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
                   ++   +  +  + E+++Q   E  + K     EE +  EE E +E +G+  E
Sbjct: 178 -----PPKKKPPNKKKEPPEEEKQRQAAREAVKGK----PEEPDVNEEREKEEDDGKDRE 228

Query: 514 EETEENDMHSSGGGR 528
             T   +   S    
Sbjct: 229 TTTSPMEEDESRQSS 243

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 10 NHDTALTLACAGGHEELVELLLSRGADIEH 39
          + +T L LA   G+ ELV+LLL  GADI  
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 33/148 (22%), Positives = 68/148 (45%), Gaps = 9/148 (6%)

Query: 363 QECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQAR-------KRERKKQK 415
                    A++++ E     A++  EE +  K R++ K  A+ R       +R R++Q 
Sbjct: 185 ARLRAQQEEAEDEREELDELRADLYQEEYE-RKERQKEKEEAEKRRRQKQELQRAREEQI 243

Query: 416 KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 475
           + +++  + +  EEE E  R+ + Q  +   +  N     +   + R E ++  +  K E
Sbjct: 244 EEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEE-KEE 302

Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
           R+  ++ E+ EE  +  EEE E +  +E
Sbjct: 303 RRAAEREEELEEGERLREEEAERQARIE 330

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 43.2 bits (103), Expect = 3e-04
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 10/119 (8%)

Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
           K+ A+A+ +E +++ K   +E K++A   ++E +  AK +  +        L  E + E 
Sbjct: 26  KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHK--------LRNEFEKEL 77

Query: 461 WREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEEEEEVEVQEVEGEMMEEETEE 518
            RE      +  KR  +K++ L++K E  +  EEE E++E+E+E ++ E E  EEE EE
Sbjct: 78  -RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135

Length = 520

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 7/132 (5%)

Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK----EEKRKAME 428
           + Q+   A K      +     +  E+ + A QAR++E +++   EK     E+  K  E
Sbjct: 56  QQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAE 115

Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
           E+++    AK +QA  A   A    E+   E+ +   K+A +  K +   + K +  E K
Sbjct: 116 EKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAK---KQAEEEAKAKAAAEAKKKAAEAK 172

Query: 489 RKAMEEEEEEEE 500
           +KA  E + + E
Sbjct: 173 KKAEAEAKAKAE 184

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 18/155 (11%)

Query: 399 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDM 458
           E        + ER  + + E  EE     E+E E     +N+              E ++
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENES-------------EGEI 685

Query: 459 EKWRE---ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
              R+   E +   +A++ + K + + E+ E + +   E  E+E E+E  E EGE +E+E
Sbjct: 686 PAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGE-EGEEVEDE 744

Query: 516 TEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNE 550
             E +         EG+  ++  +  ++A    +E
Sbjct: 745 -GEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE 778

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 42/183 (22%), Positives = 75/183 (40%), Gaps = 4/183 (2%)

Query: 388 LEELDMEKWREESKRAAQA-RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN 446
            E     K   ES+    A RK E++ + ++E KE   K  E E E +      +AE   
Sbjct: 669 QEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKG-ETEAEEVEHEGETEAEGTE 727

Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
               I   E   E   E    A    + E +  +K  + E + +A  +E+E+E E++  E
Sbjct: 728 DEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGE 787

Query: 507 VEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKK 566
            +GE M+ +          G    GE+ +    + +QA  +  + +T       +++ + 
Sbjct: 788 -DGE-MKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEA 845

Query: 567 KLD 569
           K D
Sbjct: 846 KQD 848

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
           +++ ++  Q  +R+R +++       +R+  E  EE  R  +  Q + A    +   E  
Sbjct: 603 QQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVT 662

Query: 457 DMEKWREESKRAAQA----RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEV 507
           +  + ++E ++A +     R+ + K+Q + E K    +    +E E+EE  VQ+V
Sbjct: 663 EKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEE-RVQQV 716

Length = 1068

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV--EVQEVEGEM 511
           EE D EK  E++K AA+A+ ++  K K  EK++ KR+  E+   E EE   E +  E   
Sbjct: 39  EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLR 98

Query: 512 MEEETEENDM 521
           + +  EE+D+
Sbjct: 99  LRKLQEESDL 108

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.4 bits (102), Expect = 4e-04
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 5/144 (3%)

Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIR 435
               A    ++   +L       + K  A+      + ++KLE +EE    ++  +    
Sbjct: 183 TENLAELIIDLEELKLQ----ELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEE 238

Query: 436 VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE 495
                Q    ++   I   + ++EK  EE         +E +K+KKL+++E K  A EEE
Sbjct: 239 RIDLLQELLRDEQEEIESSKQELEK-EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297

Query: 496 EEEEEEVEVQEVEGEMMEEETEEN 519
           E + E ++++  + +  E+  E  
Sbjct: 298 ELKSELLKLERRKVDDEEKLKESE 321

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 198 LLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIA 255
           LL     ++      G TPL  AA  G +E+ + LL  G D+N     S   TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL--RDSDGLTALDLA 56

Length = 56

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADID 308
            GN+PL LAA  G+L +V+LL +HGADI+
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 111 DYTPLSLAASGGYVNIIKLLLTHGAEIN 138
             TPL LAA  G + ++KLLL  GA+IN
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 10/138 (7%)

Query: 367 MVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 426
           +V   A  QQA R      I  ++    K  +E ++  + +  E +KQ+  E  + ++K 
Sbjct: 42  LVDPGAVAQQANR------IQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAE--QARQKE 93

Query: 427 MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK- 485
           +E+     + AK  +             E    K   E+K  A+A + E+K +++ +K+ 
Sbjct: 94  LEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEA-EAEKKAKEEAKKQA 152

Query: 486 EEKRKAMEEEEEEEEEVE 503
           EE+ KA    E +++  E
Sbjct: 153 EEEAKAKAAAEAKKKAAE 170

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207)

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 19/133 (14%)

Query: 377 AERANKNANILLEELDMEKWREESKRAAQARKRER----------KKQKKLEKKEEKRKA 426
           A++A +   +     + +K +E  K   +A  R+R          +++ +   K+   K 
Sbjct: 95  AKQAQRQKKLQKLLEEKQK-QEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKH 153

Query: 427 MEEEEEVIRVAKNQQAERANK----NANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
            +E  E    + +  A+         A   L+E +++K +++ ++    R+ ER+KQ+K 
Sbjct: 154 KKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQK----REEERRKQRKK 209

Query: 483 EKKEEKRKAMEEE 495
           +++EE+RK   EE
Sbjct: 210 QQEEEERKQKAEE 222

This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known. Length = 261

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 31/154 (20%), Positives = 72/154 (46%), Gaps = 6/154 (3%)

Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
           +E++KRA Q ++   KKQ   +K ++K    ++  +  R  + +Q ++  KN     +  
Sbjct: 209 QEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQR-DEVRQKQQEAKNLP---KPA 264

Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKK-EEKRKAMEEEEEE-EEEVEVQEVEGEMMEE 514
           D    +E+ + A   ++   K Q +++K  EE  KA + +  + ++E +  E E E  E 
Sbjct: 265 DTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKEL 324

Query: 515 ETEENDMHSSGGGRGEGEEGDSGIDANSQASCSS 548
           E ++     +   +    + ++   + ++ +  S
Sbjct: 325 EAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDS 358

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 25/120 (20%)

Query: 405 QARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREE 464
             R+RE ++ + +++K +K    EE ++  +  + ++ +                    E
Sbjct: 43  ALRRREYERLELMDEKWKKETEDEEFQQ--KREEKKRKD--------------------E 80

Query: 465 SKRAAQARKRERKKQKKLEKKEEK---RKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
            K A +  KR++KKQKK +KK+ K   +K  +E  +  EE   +E EGE  ++E     M
Sbjct: 81  EKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIM 140

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 5e-04
 Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 33/174 (18%)

Query: 375 QQAERANKNANIL--LEELDME----KWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
           +QAE+A +   +   L EL++     +  E  +   + ++  ++ +++LE+   + + +E
Sbjct: 207 RQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE 266

Query: 429 EEEEVIRVAKN------QQAERANKNANILLEELDMEKWREESKRAAQARKR-------- 474
           E+ E +R+  +      ++ ++        +  L      E+ K+  + R          
Sbjct: 267 EKLEELRLEVSELEEEIEELQKELYALANEISRL------EQQKQILRERLANLERQLEE 320

Query: 475 -----ERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
                E  + K  E  EE   A  EE+ EE + E++ +E E+ E E E  ++ S
Sbjct: 321 LEAQLEELESKLDELAEE--LAELEEKLEELKEELESLEAELEELEAELEELES 372

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 31/176 (17%), Positives = 82/176 (46%), Gaps = 14/176 (7%)

Query: 394 EKWREESKRAAQARKRERKKQKKLEKK-EEKRKAMEEEEEVIRVAKNQQAERANKNANIL 452
           +++     + + A+K E++++KK E+  EE +     E+E ++  + ++           
Sbjct: 62  QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKER----------- 110

Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMM 512
           L+  + +K  EE+++ AQ  ++++++Q +    E+K+KA   + +   E    +   E  
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAK 170

Query: 513 EEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAAPNSRRKDKKKKKL 568
           ++  E     ++   + + E   +   A ++A  ++ + K  A    + +KK +  
Sbjct: 171 KKAEEA--AKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAA 224

Length = 387

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 2/176 (1%)

Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
           A+ Q      +      +    +K + E+ +A  A +  + K     KK+ +  A   EE
Sbjct: 123 AEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182

Query: 432 EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
              +       ++A   A    E+   E   +           E K   + +K   K KA
Sbjct: 183 AKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKA 242

Query: 492 MEE--EEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQAS 545
            +     +  E         ++    +   +   +GGG        SG   NS AS
Sbjct: 243 DKAAAAAKAAERKAAAAALDDIFGGLSSGKNAPKTGGGAKNASSQGSGAAKNSGAS 298

Length = 387

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 29/151 (19%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 369 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 428
           ++  +N +  ++ +  ++   E   +K ++  K+  + +++ER K KK E +  K   + 
Sbjct: 175 VQKHRNAETSKSPEKGDVPAVE---KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLA 231

Query: 429 EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK----RERKKQKKLEK 484
            ++     A   +A+ A+    +     D E    +   A + +K    +++K++K+ E+
Sbjct: 232 LDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEE 291

Query: 485 KEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
           K++K+K         +    Q V+   +EEE
Sbjct: 292 KKKKKKHHHHRCHHSDGGAEQPVQNGAVEEE 322

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 23/156 (14%)

Query: 386 ILLEELDMEKWREESKRAAQA---RKRERKKQKKLEKKEEKRKAMEE-EEEVIRVAKNQQ 441
           + +++LD+EK R E +        +K + + +   +  E     +E+ E +V ++    Q
Sbjct: 10  LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69

Query: 442 AERANKN--------------ANILLEELDMEKWREESKR--AAQARKRERKKQKKLEKK 485
             R                     L  E+ + K R  S     A+  +   K +K++E  
Sbjct: 70  EIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL 129

Query: 486 EEKRKAMEE---EEEEEEEVEVQEVEGEMMEEETEE 518
           +E+ + +E+   E E   E EV E+  E  E  ++ 
Sbjct: 130 KERLERLEKNLAEAEARLEEEVAEIREEGQELSSKR 165

Length = 239

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 225 YVEVGRVLLDKGADVNAPPVPS--SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
           Y ++   +L  GAD  AP   S  S+   L  A D  +    +LL+  GA V   N+   
Sbjct: 45  YTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV---NRYAE 101

Query: 283 ----SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
               +PL+++   G L  +E+L  +GADI+ Q N  V+ +  A  
Sbjct: 102 EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALM 146

Length = 300

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 3/149 (2%)

Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME--E 429
           AK  + +R  K   +  E    +   +E  +  +  + + ++Q+K  ++ EK+  +E  +
Sbjct: 74  AKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQ 133

Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKR-AAQARKRERKKQKKLEKKEEK 488
           +EE  R A  +Q ++A         E    K   E+K+ A +A K   + + K E    K
Sbjct: 134 QEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAK 193

Query: 489 RKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
           +KA  E +   E+ + +       E++ E
Sbjct: 194 KKAEAEAKAAAEKAKAEAEAKAKAEKKAE 222

Length = 387

>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956)

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 16/47 (34%), Positives = 27/47 (57%)

Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
           EK   E K+  +A+ RE  K +K + K ++R+A  ++EE+  E   Q
Sbjct: 33  EKGIAEYKKQQKAKAREADKARKQQLKAKQRQAANDDEEDTIESVTQ 79

This family of proteins with unknown function appears to be restricted to Gammaproteobacteria. Length = 103

>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

 Score = 42.7 bits (100), Expect = 7e-04
 Identities = 42/198 (21%), Positives = 86/198 (43%), Gaps = 21/198 (10%)

Query: 354  NDKELLDKCQECSMVIRVAKNQQAERANK-NANILLEELDMEKWR---EESKRAAQARKR 409
            +  E   K  E S     A N +++  +K + N  LE+ D ++     E S       + 
Sbjct: 3915 DLLETEQKSNEQS-----AANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI 3969

Query: 410  ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
            +   Q+   +   + + ++  E++         +  + + +  LE++DME   +E+K  A
Sbjct: 3970 QPDIQENNSQPPPENEDLDLPEDL-----KLDEKEGDVSKDSDLEDMDMEA-ADENKEEA 4023

Query: 470  QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN---DMHSSGG 526
             A K E  +    E   E+   ++E+ ++++  ++ E + +M E+  EEN   +  S+  
Sbjct: 4024 DAEKDEPMQD---EDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTED 4080

Query: 527  GRGEGEEGDSGIDANSQA 544
            G    EE + G     QA
Sbjct: 4081 GVKSDEELEQGEVPEDQA 4098

Length = 4600

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 267 LLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNR 313
           LL  G   +   +  GN+PL LAA  G L +V+ L K G D++ +D+ 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD 48

Length = 56

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 8e-04
 Identities = 27/133 (20%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 374 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
            Q+    ++   + L EL++E+  EE  R  +  +  R++ ++LEK+  + +    E   
Sbjct: 464 GQELPEEHEKELLELYELELEELEEELSREKEEAEL-REEIEELEKELRELEEELIELLE 522

Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
           +  A  ++ E   +    LLEEL+  K + + ++  +  ++   + ++L++  E+ + + 
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLR 582

Query: 494 EEEEEEEEVEVQE 506
             +EE EE+  + 
Sbjct: 583 TRKEELEELRERL 595

Length = 908

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 12  DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
            T L  A    + E V+ LL  GA+    +K G TPL +A    + ++  +LLN+   ++
Sbjct: 193 FTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 252

Query: 72  A 72
            
Sbjct: 253 T 253

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNK 279
           +T L +AA  GH   V+LLL  GA V  ++K
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 28/137 (20%), Positives = 58/137 (42%)

Query: 387 LLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERAN 446
           L+EE +            + ++ + K+Q K   +  + K   E EE   +  +       
Sbjct: 179 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEE 238

Query: 447 KNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQE 506
           +   +     D ++  E SK+  +  +    +  K  K+EEK K ++EEE +    E +E
Sbjct: 239 RIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEE 298

Query: 507 VEGEMMEEETEENDMHS 523
           ++ E+++ E  + D   
Sbjct: 299 LKSELLKLERRKVDDEE 315

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           G TPL  AA  G +E+ ++LL+ GAD+NA
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 43 KGFTPLILAATAGHDKVVDILLNHKADMEA 72
           G TPL LAA  G+ +VV +LL+  AD+ A
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 393 MEKWREESKR-AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANK--NA 449
           + K  EE  R  A+ R+ E+K  +   +KE   K ++E +E     K Q      +  N 
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL 859

Query: 450 NILLEELDME------KWRE-ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEV 502
           N   EEL+ E        R+ ES+     ++R+  + +  E + +  +   + E++ + +
Sbjct: 860 NGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919

Query: 503 EVQEVEGEMMEEETEE 518
              + + E +EEE  E
Sbjct: 920 SELKAKLEALEEELSE 935

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 12/163 (7%)

Query: 356 KELLDKCQECSMVIR---------VAKNQQAERANKNANILLEELDMEKWREESKRAAQA 406
           KELL+K +E  + ++          A+ ++A+R  +       E       EE  +A  A
Sbjct: 18  KELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAA 77

Query: 407 RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESK 466
                ++  +     E      E+E         +  +A K A         +K  +   
Sbjct: 78  AAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKA 137

Query: 467 RAAQARKRERKKQ---KKLEKKEEKRKAMEEEEEEEEEVEVQE 506
                R +  K +   +   ++ +K+K  +  E+   EV + E
Sbjct: 138 ARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIPE 180

Length = 746

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 22/109 (20%), Positives = 43/109 (39%), Gaps = 26/109 (23%)

Query: 402 RAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANIL--------- 452
           +   A +R + ++K+ EKK                       R N+   I+         
Sbjct: 284 KEHHAEQRAQYREKQKEKKAFLW-----------------TLRRNRLRMIITPWRAPELH 326

Query: 453 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
            E  +++K R   K  A+ARK+E  ++++  ++E  R+A +E       
Sbjct: 327 AENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMAR 375

Length = 429

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 407 RKRERKKQKKLEKK------EEKRKAMEEEEEVIRVAKNQQAERANKNANIL-LEELDME 459
            K +R+ +  + KK        KRK   E    + +      E A + A  L L E ++E
Sbjct: 341 TKEKRETRDSIAKKIAEKLHTSKRKVRREVLPFLSIIFKHNPELAARLAAFLELTEEEIE 400

Query: 460 KWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
                 K   + +K   K +KK E++++++K      +++EE E +E E +  E+E EE 
Sbjct: 401 FLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEE 460

Query: 520 DMHSSGGGRGEGEEGDSGIDA 540
           +         E ++  + +  
Sbjct: 461 EAEEEKEEEEEKKKKQATLFD 481

Length = 482

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 375 QQAERANKNANILLEELDMEKWRE-ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
           QQ +++ K A    ++ + ++  E + K+AA+  + ++ ++++L  +E+K++A  EE   
Sbjct: 68  QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQA--EEAAK 125

Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
               K +QAE A   A          K   E+KRAA A K+   + KK  + E  +KA  
Sbjct: 126 QAALKQKQAEEAAAKA----AAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAA 181

Query: 494 EEEEEEEEVEVQEVEGE 510
           E +++ E     +   E
Sbjct: 182 EAKKKAEAEAAAKAAAE 198

Length = 387

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 35/156 (22%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 373 KNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM---EE 429
              + E   +    L E+++  K   E +        +   + +  K+E + K     EE
Sbjct: 314 LENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEE 373

Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER------KKQKKLE 483
            EE+    + + AE   + A I  E  ++++   ES      R  ER      + ++   
Sbjct: 374 LEELFEALREELAELEAELAEIRNELEELKR-EIESLEERLERLSERLEDLKEELKELEA 432

Query: 484 KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
           + EE +  +EE  EE EE+E Q  E     +E E  
Sbjct: 433 ELEELQTELEELNEELEELEEQLEELRDRLKELERE 468

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 38/178 (21%), Positives = 84/178 (47%), Gaps = 12/178 (6%)

Query: 356 KELLDKCQECSMVIRVAKNQ----QAERANKNANILLEELDMEKWREESKRAAQARKRER 411
           ++L  + +E    +   + +    Q         +   E  + K +EE +   + R+  +
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792

Query: 412 KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD--MEKWREESKRAA 469
           ++ ++LE++ E+ +   +  E    +  Q+ ER  +    L EE++   EK  E  +   
Sbjct: 793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852

Query: 470 QARKRERKKQKKLEKKEEKRKAME------EEEEEEEEVEVQEVEGEMMEEETEENDM 521
           +  K   + +++LE+ E +++ +E      EEE+EE E E++E+E E+ E + E   +
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910

Length = 1163

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 431 EEVIRVAKNQQAERANKNANIL---LEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
           E +I  AK    E   K  N L   LEEL+ E   ++++ A    K   K +++LE+K+E
Sbjct: 501 ENIIEEAKKLIGEDKEK-LNELIASLEELEREL-EQKAEEAEALLKEAEKLKEELEEKKE 558

Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEE 514
           K +  E++  EE E E Q+   E  +E
Sbjct: 559 KLQEEEDKLLEEAEKEAQQAIKEAKKE 585

Length = 782

>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 16/166 (9%)

Query: 372 AKNQQAERANKNANILLEELDMEKWREESKRAAQARKR----ERKKQKKLEKKEEKRKAM 427
            K ++           L+ L  E+ RE  ++  +   R    E+ ++++  ++EE  + +
Sbjct: 36  EKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERL 95

Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLE---- 483
           +E E++  + +  Q E   +      ++  + +  +E       RK E K++++ E    
Sbjct: 96  QEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKI 155

Query: 484 --------KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
                   ++EE+R+A   E +EE+E EV  +  +  E E E  ++
Sbjct: 156 LEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREEL 201

Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). Length = 349

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.5 bits (96), Expect = 0.002
 Identities = 23/99 (23%), Positives = 54/99 (54%), Gaps = 5/99 (5%)

Query: 397 REE--SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE 454
           +EE   ++     KRE + +KK ++ E+K++ +E++EE +     +Q +   + + +  E
Sbjct: 94  KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153

Query: 455 E---LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRK 490
           E   + +EK  EE++  A    +E +++ K E  ++ ++
Sbjct: 154 EAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKE 192

Length = 520

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 9/131 (6%)

Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQA-----ERANKNANILLEELDM 458
           A+A  + +++++  EK+  + +   E     +  K  +      E  N      LEEL  
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKR 450

Query: 459 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAME--EEEEEEEEVEVQEVEGEMMEEET 516
           E  + ES+   + R+  R K +K  +   + + +E  E+E EE++  V+E+E ++ E   
Sbjct: 451 EIEKLESEL-ERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509

Query: 517 EENDMHSSGGG 527
               +  SG G
Sbjct: 510 -MRKLELSGKG 519

Length = 652

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 24/176 (13%)

Query: 376 QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ---KKLEKKEEKRKAMEEEEE 432
           + ER  +    L E +   +   E KR      RER  +   +  EK+E   +A EE EE
Sbjct: 510 RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569

Query: 433 VIRVAKNQQAERANKNANI-----------LLEELDMEKWREESKRAAQARKRERKKQKK 481
                    ++ A     I            + + + E  R   KR A A   + ++++ 
Sbjct: 570 AREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERL 629

Query: 482 LEKKEEKRK--------AMEEEEEEEEEVE--VQEVEGEMMEEETEENDMHSSGGG 527
            EK+E KR+         +EE  E++E  E  +++VE ++ E   E +D+ +  G 
Sbjct: 630 AEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGA 685

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 34/193 (17%), Positives = 75/193 (38%), Gaps = 11/193 (5%)

Query: 375 QQAERANKNANILLEELDMEKWREE-SKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
           ++ +   +      EE++  K   E  +       +E K+++K +K +E+   +  +EE 
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297

Query: 434 IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAME 493
              ++  + ER         E+L   +   +       +++E  ++ + E KE + K   
Sbjct: 298 ELKSELLKLER---RKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREA 354

Query: 494 EEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKT 553
           EEEEEE+  ++QE       E+ EE  +              +      +    + E K 
Sbjct: 355 EEEEEEQLEKLQEK-----LEQLEEELLAKK--KLESERLSSAAKLKEEELELKNEEEKE 407

Query: 554 AAPNSRRKDKKKK 566
           A       ++++ 
Sbjct: 408 AKLLLELSEQEED 420

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 35/189 (18%), Positives = 73/189 (38%), Gaps = 14/189 (7%)

Query: 343  DQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKR 402
            ++E     Q    KE   +     +       + AE   +     + + ++ +     + 
Sbjct: 819  EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEE 878

Query: 403  AAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWR 462
              + +K + + + K EK++E++K +EEE +   + + ++ E   + A   +  L  E   
Sbjct: 879  ELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEP 938

Query: 463  EESKRAAQARKR---------ERKKQKKLEKKEEKRK-----AMEEEEEEEEEVEVQEVE 508
            EE        K          E + ++ L  KEE          E EE+EE   + +  +
Sbjct: 939  EELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKK 998

Query: 509  GEMMEEETE 517
              + EE+ E
Sbjct: 999  ERLEEEKKE 1007

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD-MEKWREESKRAAQARKRE 475
           + KK  + K  E EEE  R+ +  + E        LLE  + + K R E ++  + R+ E
Sbjct: 24  VRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE 83

Query: 476 -RKKQKKLEKKEEK-RKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
            +K +K+L +KEE   + +E  E+ EEE+E +E E E  ++E E+
Sbjct: 84  LQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128

Length = 520

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 13/143 (9%)

Query: 379 RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAK 438
            A  N++IL    ++E+  E+ +   +   +  + +K L +  ++ + +EEE E +R   
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEE---KIAELEKALAELRKELEELEEELEQLRKEL 721

Query: 439 NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
            +       +  I     D+ +   E ++  +   +  K+  +LE + E+     EE  E
Sbjct: 722 EE------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE----LEERLE 771

Query: 499 EEEVEVQEVEGEMMEEETEENDM 521
           E E E+ E E E+ E E +   +
Sbjct: 772 EAEEELAEAEAEIEELEAQIEQL 794

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 10/128 (7%)

Query: 388 LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEVIRVAKNQQAERAN 446
                     EE +      KR +K ++ +E+ EE+   ++ E EE+ R  +  ++E   
Sbjct: 402 RPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELER 461

Query: 447 KNANILLEELDMEKWREESKRAAQARKRE-RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQ 505
                   E+  +  ++   R  +AR R   + +K+LE+K+++ + +E +  E  ++   
Sbjct: 462 -----FRREVRDKVRKD---REIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL 513

Query: 506 EVEGEMME 513
           E+ G+   
Sbjct: 514 ELSGKGTP 521

Length = 652

>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413)

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 3/118 (2%)

Query: 410 ERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAA 469
           E+   KK +K +  + + E++E+++      +     K      E       R   K + 
Sbjct: 11  EKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSS- 69

Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGG 527
             +  E       EK  + RK+ E       + +    E E  EE  E  D  +S GG
Sbjct: 70  --KPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASIGG 125

This is a family of proteins conserved in fungi. The function is not known. Length = 436

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 42/177 (23%), Positives = 73/177 (41%), Gaps = 10/177 (5%)

Query: 389 EELDMEKWREESKRAAQARKRER-------KKQKKLEKKEEKRKAMEEEEEV-IRVAKNQ 440
            E D+E  ++E+ R A+   R+R       +  K  E+  EK KA+ + +++ I  AK +
Sbjct: 3   PEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRR 62

Query: 441 QAERANKNANILLE--ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEE 498
            A  A   A  L +      E+  EE K  A+A+     K K     ++KR+  EE  EE
Sbjct: 63  AAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEE 122

Query: 499 EEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGDSGIDANSQASCSSNEVKTAA 555
           E+     +       +          G      EE ++  +     + ++ + K AA
Sbjct: 123 EKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAA 179

Length = 430

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 6/132 (4%)

Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
            V K  +         I   E   E  +E+ K   +  +   +   +L +  E+ + +E+
Sbjct: 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEK 228

Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
           E + +   K +  E         LE L+  K + E K   +  +R  + +K++E+ EEK 
Sbjct: 229 EVKELEELKEEIEE-----LEKELESLEGSKRKLEEK-IRELEERIEELKKEIEELEEKV 282

Query: 490 KAMEEEEEEEEE 501
           K ++E +E+ EE
Sbjct: 283 KELKELKEKAEE 294

Length = 880

>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 406 ARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREES 465
             K E+K+Q+    +E+K + M  E   +   +  +      + +   E  D   W    
Sbjct: 206 EVKAEKKRQELERVEEKKLEKMAPEASRLD--EMSEGLLEESDDDGEEESDDESAWEGFE 263

Query: 466 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEE 501
                  K  R K+K   ++ ++++  E E E +EE
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEE 299

This nucleolar family of proteins are involved in 60S ribosomal biogenesis. They are specifically involved in the processing beyond the 27S stage of 25S rRNA maturation. This family contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60). This protein has been found to interact with herpes simplex type 1 regulatory proteins. Length = 387

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 17/139 (12%)

Query: 379 RANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE-----EV 433
           RA   A    E  D  +  +E+K AA A  RE    K   +K E+ KA  + E     + 
Sbjct: 191 RAETLAR---EAEDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKA 247

Query: 434 IRVAKNQQA--------ERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKK 485
           +  AK  +A        ++A + A     +LD  K   E+KRAA A  +E  K     KK
Sbjct: 248 LAAAKTDEAKARAEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAK-AAAAKK 306

Query: 486 EEKRKAMEEEEEEEEEVEV 504
            E  KA  + +   E V +
Sbjct: 307 AETAKAATDAKLALEPVSI 325

Length = 508

>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 35/175 (20%), Positives = 73/175 (41%), Gaps = 2/175 (1%)

Query: 351 QTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 410
                   + KC++     +    Q  +         LEE + E   + ++  +  +K  
Sbjct: 7   PIQTKPFTIPKCEDSIKGEQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKEL 66

Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL-EELDMEKWREESKRAA 469
            + +++L  +++++K     E++ +     Q E A   A  LL  E D E    E +   
Sbjct: 67  SQLEEQLINQKKEQKN-LFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDE 125

Query: 470 QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
            +++ +++ Q   E  E+KR+  + EE  + E E +  E   +E E  E  +H +
Sbjct: 126 LSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEA 180

Length = 438

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 18/130 (13%)

Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPL--MLAAMNGHTAA---VKLLLDMGSDINAQIET 178
            +I+KL +  GA +N         +PL  +L+ +  +      VK+L++ G+DIN +   
Sbjct: 51  TDIVKLFINLGANVNGLDNEY--STPLCTILSNIKDYKHMLDIVKILIENGADINKK--- 105

Query: 179 NRNTALTLAC-----FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY---VEVGR 230
           N +    L C     +    E++  +++  A+     K G T L       +   +E+ +
Sbjct: 106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIK 165

Query: 231 VLLDKGADVN 240
           +LL+KG D+N
Sbjct: 166 LLLEKGVDIN 175

Length = 489

>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 472 RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
           +K   KK+ KLE+K+ +R+  E EEEE EE +  E + E   +E EE
Sbjct: 1   KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEE 47

This is a family of proteins of approximately 300 residues, found in plants and vertebrates. They contain a highly conserved DDRGK motif. Length = 189

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 31/185 (16%), Positives = 69/185 (37%), Gaps = 1/185 (0%)

Query: 354 NDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKK 413
             KE L++ +     +     +  E   +    L   L+  +   E+ R   A   E + 
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE-LEAEL 392

Query: 414 QKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARK 473
            +   + EE ++ +E  EE +     +  +   +   +  E  +++   EE     +  +
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452

Query: 474 RERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEE 533
            + ++ +   K+ E+  A  +EE +  E E+  +E  +   E E+             E 
Sbjct: 453 EQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Query: 534 GDSGI 538
           G  G+
Sbjct: 513 GLPGV 517

Length = 1163

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 79  DTPLSLACSGGRYEVVELLLTRGANKE 105
            TPL LA   G  EVV+LLL +GA+  
Sbjct: 3   RTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVE 207
           +  T L LA   G  EVV LLLD+ A++ 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
           + E +     ++ E + + + E KE++ +   +  E   +  ++ AE   ++        
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGE 811

Query: 457 DMEKWREESKRAAQARKRERKKQKKL------EKKEEKRKA----------MEEEEEEEE 500
             E   +   +A     ++   +++L      E K++++             EEEEEEEE
Sbjct: 812 KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEE 871

Query: 501 EVEVQEVEGEMMEEETEEND 520
           E E +E E E  EEE EEN+
Sbjct: 872 EEEEEEEEEEEEEEEEEENE 891

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 27/133 (20%), Positives = 61/133 (45%), Gaps = 10/133 (7%)

Query: 373 KNQQAERANKNANILLEELDMEKWR--------EESKRAAQARKRERKKQKKLEKKEEKR 424
           K ++++   K A  L EELD ++          + ++  A  ++ E +++++  K   K 
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263

Query: 425 KAMEEEEEVIRVAKNQ--QAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKL 482
                 +E  +VA+NQ  + E+A        EE    K  +      +++  E++ + K 
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKE 323

Query: 483 EKKEEKRKAMEEE 495
            + ++KR+ + E+
Sbjct: 324 LEAQKKREPVAED 336

This family consists of several Borrelia P83/P100 antigen proteins. Length = 489

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 50/152 (32%)

Query: 377 AERANKNANIL---------LEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAM 427
             R N+   I+          E  +++K R   K  A+ARK+E           +KR+A 
Sbjct: 307 TLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIA---------QKRRAA 357

Query: 428 EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
           E E               N+ A            R+E   A    +  R         + 
Sbjct: 358 ERE--------------INREA------------RQERAAAMARARARRA------AVKA 385

Query: 488 KRKAMEEEEEEEEEVEVQEVEGEMMEEETEEN 519
           K+K + +    E+     E       +     
Sbjct: 386 KKKGLIDASPNEDTPSENEESKGSPPQVEATT 417

Length = 429

>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552)

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 24/118 (20%)

Query: 398 EESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKN--QQAERANKNANILLEE 455
           EE+K+ A+A K+E      LE KEE  K   E E  ++  +N  Q+ E+       LL+ 
Sbjct: 41  EEAKKEAEALKKE----ALLEAKEEIHKLRAEAERELKERRNELQRQEKR------LLQ- 89

Query: 456 LDMEKWREE--SKRAAQARKRER---KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVE 508
                 +EE   ++     K+E    +K+K+L  ++++ +  EEE EE  E + QE+E
Sbjct: 90  ------KEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELE 141

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Length = 201

>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 8/98 (8%)

Query: 411 RKKQKKLEKKEEKRKAMEEEEEVIRVAK-NQQAERANKNANILLEELDMEKWREESKRAA 469
            K   K ++KE +++  E EE   + AK +  A R    A    E+ D E+  E+    +
Sbjct: 35  IKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPS 94

Query: 470 -------QARKRERKKQKKLEKKEEKRKAMEEEEEEEE 500
                  +ARKR+RK  +KL + EE+ +  + ++E+E+
Sbjct: 95  AVPQWGKKARKRQRKVIRKLLEAEEQLREDQYDDEDED 132

A Saccharomyces cerevisiae member of this family (PGA2) is an ER protein which has been implicated in protein trafficking. Length = 139

>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 30/140 (21%)

Query: 390 ELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNA 449
           E D E  ++ +KR ++A K+E      LE KEE RK  EE      + +  ++ER     
Sbjct: 52  ERDAEHIKKTAKRESKALKKE----LLLEAKEEARKYREE------IEQEFKSER----- 96

Query: 450 NILLEELDMEKWREESKRAAQARKRER--KKQKKLEKKEE----KRKAMEEEEEEEEEVE 503
               +EL   + R   +  +  RK E    K+K LE KE+    K K ++E EE+ E++E
Sbjct: 97  ----QELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152

Query: 504 VQEVE-----GEMMEEETEE 518
            Q+         + + E  E
Sbjct: 153 EQKKAELERVAALSQAEARE 172

Length = 535

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	596
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG4369|consensus	2131		100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510|consensus	929		100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG4177|consensus	1143		100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177|consensus	1143		100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0508|consensus	615		100.0
KOG0508|consensus	615		100.0
KOG4412|consensus	226		100.0
PHA02792	631	ankyrin-like protein; Provisional	100.0
KOG4412|consensus	226		99.98
KOG4369|consensus	2131		99.97
KOG0509|consensus	600		99.97
KOG0509|consensus	600		99.97
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG0502|consensus	296		99.92
KOG0502|consensus	296		99.92
KOG0507|consensus	854		99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0507|consensus	854		99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
KOG0505|consensus	527		99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
KOG0505|consensus	527		99.88
KOG0514|consensus	452		99.87
KOG0514|consensus	452		99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.8
PHA02736	154	Viral ankyrin protein; Provisional	99.77
KOG0512|consensus	228		99.76
KOG0512|consensus	228		99.75
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
KOG3676|consensus	782		99.72
KOG0195|consensus	448		99.71
KOG3676|consensus	782		99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.68
KOG0195|consensus	448		99.67
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
KOG4214|consensus	117		99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.51
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.5
KOG4214|consensus	117		99.46
KOG1710|consensus	396		99.39
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.37
KOG0515|consensus	752		99.36
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.34
KOG1710|consensus	396		99.34
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.29
KOG0515|consensus	752		99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.24
KOG0818|consensus	669		98.77
KOG0783|consensus	1267		98.71
PF13606	30	Ank_3: Ankyrin repeat	98.68
KOG0818|consensus	669		98.65
KOG0782|consensus	1004		98.63
PF13606	30	Ank_3: Ankyrin repeat	98.62
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.59
KOG0783|consensus	1267		98.56
KOG0782|consensus	1004		98.53
KOG0705|consensus	749		98.48
KOG0506|consensus	622		98.48
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.47
KOG0506|consensus	622		98.45
KOG3609|consensus	822		98.44
KOG2384|consensus	223		98.43
KOG0705|consensus	749		98.42
KOG0522|consensus	560		98.37
KOG0521|consensus	785		98.33
KOG0522|consensus	560		98.29
KOG3609|consensus	822		98.22
PTZ00121	2084	MAEBL; Provisional	98.19
KOG0511|consensus	516		98.18
KOG0511|consensus	516		98.1
KOG2505|consensus	591		98.1
KOG4364|consensus	811		98.07
KOG0520|consensus	975		97.88
KOG2384|consensus	223		97.83
KOG0521|consensus	785		97.77
PTZ00266	1021	NIMA-related protein kinase; Provisional	97.56
KOG0520|consensus	975		97.56
KOG2505|consensus	591		97.3
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.95
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.84
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.61
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.51
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.49
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.47
PLN03218	1060	maturation of RBCL 1; Provisional	95.86
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	95.86
PLN03218	1060	maturation of RBCL 1; Provisional	95.52
KOG2072|consensus	988		95.3
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	95.04
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.98
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.62
PLN03077	857	Protein ECB2; Provisional	92.97
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.78
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.61
PLN03077	857	Protein ECB2; Provisional	92.1
PF07946	321	DUF1682: Protein of unknown function (DUF1682); In	91.57
PF07946	321	DUF1682: Protein of unknown function (DUF1682); In	89.45
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	88.56
PF15437	86	PGBA_C: Plasminogen-binding protein pgbA C-termina	81.62

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=412.99  Aligned_cols=332  Identities=25%  Similarity=0.304  Sum_probs=287.7

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCC-ccccCCCCCcHHHHHH----------------------------------
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGAD-IEHRDKKGFTPLILAA----------------------------------   52 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~-i~~~d~~g~t~L~~A~----------------------------------   52 (596)
                      ++.+.||||.||..|+.++|++|++.+.+ ++..|..|.||||+|+                                  
T Consensus        38 ~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  117 (682)
T PHA02876         38 ESIPFTAIHQALQLRQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKL  117 (682)
T ss_pred             ccccchHHHHHHHHHhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHH
Confidence            46789999999999999999999998766 5667788999999666                                  


Q ss_pred             ------------------------------------HcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHH
Q psy904           53 ------------------------------------TAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL   96 (596)
Q Consensus        53 ------------------------------------~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~   96 (596)
                                                          ..|+.+++++|++.|++++.. +..|.||||+|+..|+.++|++
T Consensus       118 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~-d~~G~TpLh~Aa~~G~~~iv~~  196 (682)
T PHA02876        118 DEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAK-DIYCITPIHYAAERGNAKMVNL  196 (682)
T ss_pred             HHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHCCCHHHHHH
Confidence                                                456788999999999998865 5679999999999999999999


Q ss_pred             HHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCcc---------------------------ccCCCCCCCcH
Q psy904           97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN---------------------------SRTGSKLGISP  149 (596)
Q Consensus        97 LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~---------------------------~~~~~~~g~t~  149 (596)
                      |+++|++++..+..|.||||+|+..|+.+++++|++.+.+++                           ....+..|.||
T Consensus       197 LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~Tp  276 (682)
T PHA02876        197 LLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTP  276 (682)
T ss_pred             HHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            999999999999999999999999999888888776654432                           11223458899


Q ss_pred             HHHHHHcCCH-HHHHHHHhcCCCcccccccCCCcHHHHHHHcC-CHHHHHHHHhcCCCcccccCCCChHHHHHHhc-CcH
Q psy904          150 LMLAAMNGHT-AAVKLLLDMGSDINAQIETNRNTALTLACFQG-RHEVVSLLLDRKANVEHRAKTGLTPLMEAASG-GYV  226 (596)
Q Consensus       150 L~~A~~~g~~-eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~-~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~  226 (596)
                      ||+|+..|+. .++++|+..|++++.. +..|.||||+|+..| ..+++++|+..|++++..+..|.||||+|+.. ++.
T Consensus       277 Lh~Aa~~~~~~~iv~lLl~~gadin~~-d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~  355 (682)
T PHA02876        277 LHHASQAPSLSRLVPKLLERGADVNAK-NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNK  355 (682)
T ss_pred             HHHHHhCCCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcH
Confidence            9999999986 5899999999998876 678899999999998 58999999999999999999999999999885 578


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCc-HHHHHHHHHCCC
Q psy904          227 EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH-LSVVELLCKHGA  305 (596)
Q Consensus       227 ~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~ga  305 (596)
                      +++.+|+..|++++.  .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|+
T Consensus       356 ~iv~lLl~~gadin~--~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~ga  433 (682)
T PHA02876        356 DIVITLLELGANVNA--RDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGA  433 (682)
T ss_pred             HHHHHHHHcCCCCcc--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCC
Confidence            899999999999887  56789999999999999999999999999999999999999999987655 567899999999


Q ss_pred             CcccCCCCCCCHHHHHHHcC-CHHHHHHHHhCcCCCCCc
Q psy904          306 DIDSQDNRKVSCLMAAFRKG-HVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       306 d~~~~~~~g~t~L~~A~~~g-~~~iv~~Ll~~~~~~~~~  343 (596)
                      +++.+|..|.||||+|+..| +.+++++|+++|+++...
T Consensus       434 din~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        434 NVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             CCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence            99999999999999999876 689999999999976543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.9e-45  Score=385.75  Aligned_cols=317  Identities=22%  Similarity=0.315  Sum_probs=280.2

Q ss_pred             CCCCcHHHHHHh--cCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904            9 SNHDTALTLACA--GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC   86 (596)
Q Consensus         9 ~~g~t~L~~A~~--~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~   86 (596)
                      ..+.++||.++.  .++.++|++|++.|+++|..|..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+
T Consensus        35 ~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~-d~~g~TpLh~A~  113 (446)
T PHA02946         35 SGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNAC-DKQHKTPLYYLS  113 (446)
T ss_pred             CCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHH
Confidence            345699998774  45789999999999999999999999999999999999999999999999854 678999999998


Q ss_pred             HCC--cHHHHHHHHhCCCCccC-CCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC--CHHH
Q psy904           87 SGG--RYEVVELLLTRGANKEH-RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG--HTAA  161 (596)
Q Consensus        87 ~~g--~~eivk~LL~~g~~~~~-~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~ei  161 (596)
                      ..+  ..+++++|+++|++++. .+..|.|||+ |+..|+.+++++|++.|++++..+.  .|.||||+|+..+  +.++
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~--~G~t~Lh~A~~~~~~~~~~  190 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK--FGKNHIHRHLMSDNPKAST  190 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCC--CCCCHHHHHHHhcCCCHHH
Confidence            866  48999999999999985 6889999997 6677999999999999998887664  4999999998755  4699


Q ss_pred             HHHHHhcCCCcccccccCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc-HHHHHHHHhCCCC
Q psy904          162 VKLLLDMGSDINAQIETNRNTALTLACFQG--RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY-VEVGRVLLDKGAD  238 (596)
Q Consensus       162 v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~--~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~iv~~Ll~~g~~  238 (596)
                      +++|++.|++++.. +..|.||||+|+..+  +.+++.+|+. |++++..+..|.||||+|+..++ .+++++|+.+|.+
T Consensus       191 v~~Ll~~Gadin~~-d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        191 ISWMMKLGISPSKP-DHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNV  268 (446)
T ss_pred             HHHHHHcCCCCccc-CCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCC
Confidence            99999999999886 678999999999886  8899999985 89999999999999999999988 5899999999865


Q ss_pred             CCCCC-------------------CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHH
Q psy904          239 VNAPP-------------------VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL  299 (596)
Q Consensus       239 ~~~~~-------------------~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~  299 (596)
                      ++...                   ....|.||||+|+..|+.++|++|+++|+       .|.||||+|+..|+.+++++
T Consensus       269 ~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~  341 (446)
T PHA02946        269 ITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDY  341 (446)
T ss_pred             CCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHH
Confidence            42210                   11346799999999999999999999875       47899999999999999999


Q ss_pred             HHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       300 Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      |+.+|++++.. ..|.|||++|+..++..+++.|+.+.++
T Consensus       342 Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~~~ll~~~~~  380 (446)
T PHA02946        342 LLFNHFSVDSV-VNGHTCMSECVRLNNPVILSKLMLHNPT  380 (446)
T ss_pred             HHHCCCCCCCc-cccccHHHHHHHcCCHHHHHHHHhcCcc
Confidence            99999999986 5899999999999999999999997554

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-44  Score=404.69  Aligned_cols=325  Identities=28%  Similarity=0.361  Sum_probs=276.9

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      +..|.||||+||..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.+.++..     +.++|+.|+.
T Consensus       175 d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~-----~~~~L~~ai~  249 (682)
T PHA02876        175 DIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINK-----NDLSLLKAIR  249 (682)
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC-----CcHHHHHHHH
Confidence            44566777777777777777777777777666666667777777777777777777666655432     3356677777


Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCH-HHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC-CHHHHHHH
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV-NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG-HTAAVKLL  165 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~-eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g-~~eiv~~L  165 (596)
                      .++.+++.+|++.|++++..+..|.||||+|+..++. .++.+|+..|++++....  .|.||||+|+..| +.+++++|
T Consensus       250 ~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~--~g~TpLh~Aa~~g~~~~~v~~L  327 (682)
T PHA02876        250 NEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI--KGETPLYLMAKNGYDTENIRTL  327 (682)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCC--CCCCHHHHHHHhCCCHHHHHHH
Confidence            7777777788888888999999999999999999997 599999999999887664  4999999999999 69999999


Q ss_pred             HhcCCCcccccccCCCcHHHHHHHc-CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCC
Q psy904          166 LDMGSDINAQIETNRNTALTLACFQ-GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPV  244 (596)
Q Consensus       166 l~~~~~~~~~~~~~~~t~L~~A~~~-~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~  244 (596)
                      +..|++++.. +..|.||||+|+.. ++.+++.+|+..|++++..+..|.||||+|+..|+.+++++|++.|++++.  .
T Consensus       328 l~~gadin~~-d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~--~  404 (682)
T PHA02876        328 IMLGADVNAA-DRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEA--L  404 (682)
T ss_pred             HHcCCCCCCc-ccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccc--c
Confidence            9999999876 77889999999985 578999999999999999999999999999999999999999999999987  5


Q ss_pred             CCCCCcHHHHHHHcCc-HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcC-cHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904          245 PSSRDTALTIAADKGH-CRFVELLLSKGAQVEVKNKKGNSPLWLAANGG-HLSVVELLCKHGADIDSQDNRKVSCLMAAF  322 (596)
Q Consensus       245 ~~~g~t~L~~A~~~~~-~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~  322 (596)
                      +..|.||||+|+..++ ..++++|+++|++++.+|..|.||||+|+..| +.+++++|+++|++++..|..|.|||++|+
T Consensus       405 ~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~  484 (682)
T PHA02876        405 SQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIAL  484 (682)
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            6788999999997665 56799999999999999999999999999876 789999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCcCCCCCch
Q psy904          323 RKGHVKAVRWMVNHVAQFPSDQ  344 (596)
Q Consensus       323 ~~g~~~iv~~Ll~~~~~~~~~~  344 (596)
                      .++  .++..|+.+|++.....
T Consensus       485 ~~~--~~v~~Ll~~~a~~~~~~  504 (682)
T PHA02876        485 EYH--GIVNILLHYGAELRDSR  504 (682)
T ss_pred             HhC--CHHHHHHHCCCCCCcCc
Confidence            876  57999999999877553

>KOG4369|consensus

Probab=100.00  E-value=2.4e-47  Score=401.02  Aligned_cols=400  Identities=64%  Similarity=0.877  Sum_probs=388.0

Q ss_pred             CCCccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHH
Q psy904            3 VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPL   82 (596)
Q Consensus         3 i~~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L   82 (596)
                      ||..++.+..|+|..||..|+.++|.+|+..|+++.++|..|++||.+|+..||+.+|+.|+.+.+++..+.+..+.|+|
T Consensus       749 id~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  749 IDPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTML  828 (2131)
T ss_pred             eccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceE
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHH
Q psy904           83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV  162 (596)
Q Consensus        83 ~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv  162 (596)
                      .+||..|+.++|.+||..|++-.+++...+|||.+|...|.+++|..|+..|..++.+..++.|..||++|.++||...+
T Consensus       829 Slacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at  908 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAAT  908 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCC
Q psy904          163 KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAP  242 (596)
Q Consensus       163 ~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~  242 (596)
                      +.|++.|.+++..+..+.+|+|.+|+..|+.+++.+||...+++.++...|.|||+-++..|++++-.+||..|+|+|..
T Consensus       909 ~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nas  988 (2131)
T KOG4369|consen  909 LSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNAS  988 (2131)
T ss_pred             HHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904          243 PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF  322 (596)
Q Consensus       243 ~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~  322 (596)
                      .+.....|+|.+++..|+..+|..|+...+.+..+|+.|.|+|++|+..|++..+.+|+++++|++..|+...++++.|+
T Consensus       989 Pvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maaf 1068 (2131)
T KOG4369|consen  989 PVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAF 1068 (2131)
T ss_pred             CCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCcCCCCCchHHHHHHhhcCcHHHHHhhhhhhHHHHHHhhHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Q psy904          323 RKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKR  402 (596)
Q Consensus       323 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~  402 (596)
                      +.||+.||+|+......++...++.+++.++.+..+...|..|..+++.++.-++...+..+..|++..+.+.-+++.++
T Consensus      1069 RKgh~~iVk~mv~~atqfps~q~~ir~~~Tvss~~i~~kc~~c~~i~rSakqAQa~sa~~~a~~lle~~dee~s~qe~~~ 1148 (2131)
T KOG4369|consen 1069 RKGHFAIVKKMVPPATQFPSVQSTIRSLPTVSSAPITSKCAPCTFIPRSAKQAQASSAKMEAFSLLEPTDEEVSTQEQPM 1148 (2131)
T ss_pred             HhchhheeccccCchhcCCcHHHHHHhcccccccchhccccchhhhhhhhHHHHHHHhhhhhhhcccchhhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999988888776665555443

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.9e-44  Score=378.45  Aligned_cols=339  Identities=17%  Similarity=0.231  Sum_probs=263.9

Q ss_pred             CCCCccCCCCCcHHHHHHhcC---cHHHHHHHHHCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCcccc-cc
Q psy904            2 DVDSETESNHDTALTLACAGG---HEELVELLLSRGADIEHRDKKGFTPLILAATAG--HDKVVDILLNHKADMEAQ-SE   75 (596)
Q Consensus         2 di~~~~d~~g~t~L~~A~~~g---~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g--~~eiv~~Ll~~~~~~~~~-~~   75 (596)
                      |||...|..|.||||+|+..|   +.++|++||++|++++..|..|.||||+|+..+  +.++|++|++.|+..... .+
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~  111 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTS  111 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccc
Confidence            677788899999999999997   599999999999999999999999999999977  799999999997654222 34


Q ss_pred             CCCChHHHHHHH--CCcHHHHHHHHh-CCCCccCCCC-----CCCcHHHHHHhcCCHHHHHHHHhCCCCcccc------C
Q psy904           76 RTKDTPLSLACS--GGRYEVVELLLT-RGANKEHRNV-----SDYTPLSLAASGGYVNIIKLLLTHGAEINSR------T  141 (596)
Q Consensus        76 ~~~~t~L~~A~~--~g~~eivk~LL~-~g~~~~~~d~-----~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~------~  141 (596)
                      ..+++|||.++.  ++++++|++|+. .+++++....     .|.+|++++...+++++|++|+++|++++..      .
T Consensus       112 ~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~  191 (672)
T PHA02730        112 NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMY  191 (672)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccc
Confidence            457889988888  889999999996 6677766532     6789999999999999999999999988522      1


Q ss_pred             CCCCCCcHHHHHH------HcCCHHHHHHHHhcCCCcccccccCCCcHHHH--HHHcCCHHHHHHHHh------------
Q psy904          142 GSKLGISPLMLAA------MNGHTAAVKLLLDMGSDINAQIETNRNTALTL--ACFQGRHEVVSLLLD------------  201 (596)
Q Consensus       142 ~~~~g~t~L~~A~------~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~--A~~~~~~~ii~~Ll~------------  201 (596)
                      ....+.|.||+++      .+++.+++++|+.+|++++.. +..|.||||+  ++..++.+++++|++            
T Consensus       192 ~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~k-d~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~  270 (672)
T PHA02730        192 DSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGR-DEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDIS  270 (672)
T ss_pred             cCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccccc
Confidence            2222334455333      446788999999999988876 6788899985  445566888888888            


Q ss_pred             --------------------cCCCccc--------------------ccCCCCh---------------------HHHHH
Q psy904          202 --------------------RKANVEH--------------------RAKTGLT---------------------PLMEA  220 (596)
Q Consensus       202 --------------------~g~~~~~--------------------~~~~g~t---------------------~L~~A  220 (596)
                                          +|++...                    .+..|.+                     .||.-
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y  350 (672)
T PHA02730        271 QPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINY  350 (672)
T ss_pred             chhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHH
Confidence                                6666544                    3445543                     55655


Q ss_pred             HhcC---cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHCCC--CCCCCCCCCChHHHH---H
Q psy904          221 ASGG---YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH----CRFVELLLSKGA--QVEVKNKKGNSPLWL---A  288 (596)
Q Consensus       221 ~~~g---~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~----~~iv~~Ll~~g~--di~~~d~~g~TpL~~---A  288 (596)
                      ...+   +.+++++|+++|+++|..   ..|.||||+|+..++    .+++++|+++|+  +++..|..|.||||.   |
T Consensus       351 ~~~~~~v~ieIvelLIs~GAdIN~k---~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a  427 (672)
T PHA02730        351 LHYGDMVSIPILRCMLDNGATMDKT---TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILS  427 (672)
T ss_pred             HhcCCcCcHHHHHHHHHCCCCCCcC---CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHH
Confidence            5544   588888888888888852   578888888887764    788888888886  588888888888884   3


Q ss_pred             HhcC---------cHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCch
Q psy904          289 ANGG---------HLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQ  344 (596)
Q Consensus       289 ~~~g---------~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~  344 (596)
                      ...+         ..+++++|+.+|++++..|..|.||||+|+..++.+++++|+.+|+++....
T Consensus       428 ~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d  492 (672)
T PHA02730        428 RFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS  492 (672)
T ss_pred             HhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence            2222         2356888888888888888888888888888888888888888888765543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=369.94  Aligned_cols=346  Identities=23%  Similarity=0.350  Sum_probs=295.3

Q ss_pred             cHHHHHHhcCcHHHHHHHHHC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcH
Q psy904           13 TALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY   91 (596)
Q Consensus        13 t~L~~A~~~g~~~ivk~Ll~~-g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~   91 (596)
                      ..|..|+..|++++|++|+.. +..++..+..|.||||.|+..|+.++|++|++.|++++.. +..|.||||+|+..|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~-~~~~~t~L~~A~~~~~~   81 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHI-NTKIPHPLLTAIKIGAH   81 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCH
Confidence            468999999999999999985 5668888899999999999999999999999999998764 55789999999999999


Q ss_pred             HHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q psy904           92 EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD  171 (596)
Q Consensus        92 eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~  171 (596)
                      +++++|+++|+++...          ++...+.+++++|++.|++++....  .|.||||+|+..|+.+++++|++.|++
T Consensus        82 ~iv~~Ll~~g~~~~~~----------~~~~~~~~~i~~ll~~g~d~n~~~~--~g~T~Lh~A~~~~~~~~v~~Ll~~gad  149 (434)
T PHA02874         82 DIIKLLIDNGVDTSIL----------PIPCIEKDMIKTILDCGIDVNIKDA--ELKTFLHYAIKKGDLESIKMLFEYGAD  149 (434)
T ss_pred             HHHHHHHHCCCCCCcc----------hhccCCHHHHHHHHHCcCCCCCCCC--CCccHHHHHHHCCCHHHHHHHHhCCCC
Confidence            9999999999876432          2344578999999999999887654  499999999999999999999999999


Q ss_pred             cccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcH
Q psy904          172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA  251 (596)
Q Consensus       172 ~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~  251 (596)
                      ++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||
T Consensus       150 ~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~--~~~~g~Tp  226 (434)
T PHA02874        150 VNIE-DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN--KCKNGFTP  226 (434)
T ss_pred             CCCc-CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcC--CCCCCCCH
Confidence            9876 67899999999999999999999999999999999999999999999999999999999999876  55789999


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcC-cHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcC-CHHH
Q psy904          252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG-HLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG-HVKA  329 (596)
Q Consensus       252 L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g-~~~i  329 (596)
                      ||+|+..+. .++.+|+ .|++++..|..|.||||+|+..+ +.+++++|+.+|++++.+|..|.|||++|+..+ ...+
T Consensus       227 L~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~  304 (434)
T PHA02874        227 LHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPV  304 (434)
T ss_pred             HHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHH
Confidence            999999765 5667776 68999999999999999999875 899999999999999999999999999999987 7789


Q ss_pred             HHHHHhCcCCCCCc-----hHHHHHHhhcCcHHHHHhhhhhhHHHHHHhhHH
Q psy904          330 VRWMVNHVAQFPSD-----QEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQ  376 (596)
Q Consensus       330 v~~Ll~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  376 (596)
                      ++.|+.++......     ..............+......|...|...+...
T Consensus       305 ik~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~c~~ei~~mk~~~  356 (434)
T PHA02874        305 IKDIIANAVLIKEADKLKDSDFLEHIEIKDNKEFSDFIKECNEEIEDMKKTK  356 (434)
T ss_pred             HHHHHHhcCchhhccccchhHHHHHHHHhccchHHHHHHHHHHHHHHHhcce
Confidence            99999988643221     112222222233344444556666666555443

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-42  Score=377.49  Aligned_cols=334  Identities=18%  Similarity=0.225  Sum_probs=253.9

Q ss_pred             CCCccCCCCCcHHHHHHhc---CcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHH----HHHHHHhCCCCcccccc
Q psy904            3 VDSETESNHDTALTLACAG---GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDK----VVDILLNHKADMEAQSE   75 (596)
Q Consensus         3 i~~~~d~~g~t~L~~A~~~---g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~e----iv~~Ll~~~~~~~~~~~   75 (596)
                      ++...|.+|.||||+||..   |+.++|++||+.|++++..+..|.||||+|+..|+.+    ++++|++.+...+..  
T Consensus        24 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~--  101 (661)
T PHA02917         24 PNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN--  101 (661)
T ss_pred             cccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC--
Confidence            3455688999999997555   8899999999999999999999999999999999854    567787765432221  


Q ss_pred             CCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHH--hcCCHHHHHHHHhCCCCccccCC-CCCC------
Q psy904           76 RTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA--SGGYVNIIKLLLTHGAEINSRTG-SKLG------  146 (596)
Q Consensus        76 ~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~--~~g~~eiv~~Ll~~g~~~~~~~~-~~~g------  146 (596)
                       ...+++++|+.+|+.++|++|+++|++++..|..|.||||+++  ..|+.+++++|+++|++++.... +..|      
T Consensus       102 -~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~  180 (661)
T PHA02917        102 -DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY  180 (661)
T ss_pred             -CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence             1236777888888899999999999999888888999998543  46788999999999888864321 1223      


Q ss_pred             -----CcHHHHHHH-----------cCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCH--HHHHHHHhcCCCcc-
Q psy904          147 -----ISPLMLAAM-----------NGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH--EVVSLLLDRKANVE-  207 (596)
Q Consensus       147 -----~t~L~~A~~-----------~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~--~ii~~Ll~~g~~~~-  207 (596)
                           .||||+|+.           +++.+++++|+.+|++++.. +..|.||||+|+.+|+.  +++++|++ |++++ 
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~-d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI-DKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC-CCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence                 588988875           45788999999999888876 67788899998888874  67887765 55432 


Q ss_pred             ---cccCCCChHHHHHH---------------------------------------------------------------
Q psy904          208 ---HRAKTGLTPLMEAA---------------------------------------------------------------  221 (596)
Q Consensus       208 ---~~~~~g~t~L~~A~---------------------------------------------------------------  221 (596)
                         ..+..|.+|+++|+                                                               
T Consensus       259 ~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  338 (661)
T PHA02917        259 YSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEY  338 (661)
T ss_pred             cccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHH
Confidence               12222222222222                                                               


Q ss_pred             -hcCc--HHHHHHHHhCCCCCCCCC----------------------------CCCCCCcHHHHHHHcC-----------
Q psy904          222 -SGGY--VEVGRVLLDKGADVNAPP----------------------------VPSSRDTALTIAADKG-----------  259 (596)
Q Consensus       222 -~~g~--~~iv~~Ll~~g~~~~~~~----------------------------~~~~g~t~L~~A~~~~-----------  259 (596)
                       ..|.  .+++++|+++|++++..+                            .+..|.||||.|+..+           
T Consensus       339 ~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~  418 (661)
T PHA02917        339 MTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTY  418 (661)
T ss_pred             HHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhh
Confidence             2333  447788888887766421                            1234889998887432           


Q ss_pred             ------------cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH-cCC
Q psy904          260 ------------HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR-KGH  326 (596)
Q Consensus       260 ------------~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~-~g~  326 (596)
                                  ..+++++|+++|+|++.+|..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+. .++
T Consensus       419 ~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~  498 (661)
T PHA02917        419 KKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRN  498 (661)
T ss_pred             hhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCC
Confidence                        3567789999999999999999999999998889999999999999999999999999999985 678


Q ss_pred             HHHHHHHHhCcCCCC
Q psy904          327 VKAVRWMVNHVAQFP  341 (596)
Q Consensus       327 ~~iv~~Ll~~~~~~~  341 (596)
                      .+++++|+.+|+++.
T Consensus       499 ~~iv~~LL~~ga~i~  513 (661)
T PHA02917        499 IELLKMLLCHKPTLD  513 (661)
T ss_pred             HHHHHHHHHcCCChh
Confidence            899999999888765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8e-43  Score=378.35  Aligned_cols=316  Identities=17%  Similarity=0.182  Sum_probs=226.5

Q ss_pred             hcCcHHHHHHHHHCC-CCcccc-CCCCCcHHHHHHH--cCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCc--HHH
Q psy904           20 AGGHEELVELLLSRG-ADIEHR-DKKGFTPLILAAT--AGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR--YEV   93 (596)
Q Consensus        20 ~~g~~~ivk~Ll~~g-~~i~~~-d~~g~t~L~~A~~--~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~--~ei   93 (596)
                      ..+++++|++|++.| +++|.. |..|.||||+|+.  +++.+++++|+++|++++.. +..|.||||+|+..|+  .++
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~k-D~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQ-NNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCCCHHH
Confidence            457788888888888 888877 7778888887754  35678888888888887764 4568888888888774  478


Q ss_pred             HHHHHhCCCCccCCCCCCCcHHHHHH---hcCCHHHHHHHHhCCCCccccCCCCCCCcHH---HHHHHcCCHHHHHHHHh
Q psy904           94 VELLLTRGANKEHRNVSDYTPLSLAA---SGGYVNIIKLLLTHGAEINSRTGSKLGISPL---MLAAMNGHTAAVKLLLD  167 (596)
Q Consensus        94 vk~LL~~g~~~~~~d~~g~t~L~~A~---~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L---~~A~~~g~~eiv~~Ll~  167 (596)
                      |++|+++|++++..+..|.||||+|+   .+++.++++.|++.+.......    ..++|   ..|+..|+.+++++|++
T Consensus       230 VklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~----~~~~L~~~i~AA~~g~leiVklLLe  305 (764)
T PHA02716        230 IKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKN----IPMILHSYITLARNIDISVVYSFLQ  305 (764)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccccc----chhhhHHHHHHHHcCCHHHHHHHHh
Confidence            88888888888888888888888764   3556677777766532211110    11122   23566677777777777


Q ss_pred             cCCCcccccccCCCcHHHHHHH--cCCHHHHHHHHhcCCCcccccCCCChHHHHHHh--------------cCcHHHHHH
Q psy904          168 MGSDINAQIETNRNTALTLACF--QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAAS--------------GGYVEVGRV  231 (596)
Q Consensus       168 ~~~~~~~~~~~~~~t~L~~A~~--~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~--------------~g~~~iv~~  231 (596)
                      .|++++.. +..|.||||+|+.  .++.+++++|++.|++++..|..|.||||+|+.              .++.+++++
T Consensus       306 ~GAdIN~k-D~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVkl  384 (764)
T PHA02716        306 PGVKLHYK-DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQC  384 (764)
T ss_pred             CCCceecc-CCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHH
Confidence            77766654 5566677776553  345677777777777777777777777776653              256677777


Q ss_pred             HHhCCCCCCCCCCCCCCCcHHHHH----HHcCcHHHHHHHHHCC------------------------------------
Q psy904          232 LLDKGADVNAPPVPSSRDTALTIA----ADKGHCRFVELLLSKG------------------------------------  271 (596)
Q Consensus       232 Ll~~g~~~~~~~~~~~g~t~L~~A----~~~~~~~iv~~Ll~~g------------------------------------  271 (596)
                      |+++|++++.  .+..|.||||.+    ...++.+++++|++.|                                    
T Consensus       385 LL~~GADIn~--kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~  462 (764)
T PHA02716        385 LISLGADITA--VNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTD  462 (764)
T ss_pred             HHHCCCCCCC--cCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchh
Confidence            7777776665  446677777632    2234556666665543                                    


Q ss_pred             -------------------------CCCCCCCCCCChHHHHHHhcCcH-----HHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy904          272 -------------------------AQVEVKNKKGNSPLWLAANGGHL-----SVVELLCKHGADIDSQDNRKVSCLMAA  321 (596)
Q Consensus       272 -------------------------~di~~~d~~g~TpL~~A~~~g~~-----~iv~~Ll~~gad~~~~~~~g~t~L~~A  321 (596)
                                               .+++..|..|+||||+|+..|+.     +++++|++.|++++.+|..|.||||+|
T Consensus       463 ~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A  542 (764)
T PHA02716        463 LYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLT  542 (764)
T ss_pred             hhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHH
Confidence                                     34456678899999999999876     556999999999999999999999999


Q ss_pred             HHcCCH-----HHHHHHHhCcCCCCCc
Q psy904          322 FRKGHV-----KAVRWMVNHVAQFPSD  343 (596)
Q Consensus       322 ~~~g~~-----~iv~~Ll~~~~~~~~~  343 (596)
                      +.+|+.     ++|++|+++|+++..-
T Consensus       543 ~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        543 MRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             HHcCCccccHHHHHHHHHhcCCCcchH
Confidence            999977     9999999999986654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.9e-41  Score=367.61  Aligned_cols=327  Identities=17%  Similarity=0.189  Sum_probs=254.6

Q ss_pred             CCCCCccCCCCCcHHHHHHh--cCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCC--HHHHHHHHhCCCCccccccC
Q psy904            1 MDVDSETESNHDTALTLACA--GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGH--DKVVDILLNHKADMEAQSER   76 (596)
Q Consensus         1 ~di~~~~d~~g~t~L~~A~~--~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~--~eiv~~Ll~~~~~~~~~~~~   76 (596)
                      +|||...+..|.||||+|+.  +|+.++|++|+++|++++..|..|.||||+|+..|+  .++|++|+++|++++.. +.
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~k-D~  245 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMK-CV  245 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCC-CC
Confidence            36777778899999999864  568999999999999999999999999999999995  49999999999999875 56


Q ss_pred             CCChHHHHHH---HCCcHHHHHHHHhCCCCccCCCCCCCcHHH---HHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHH
Q psy904           77 TKDTPLSLAC---SGGRYEVVELLLTRGANKEHRNVSDYTPLS---LAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL  150 (596)
Q Consensus        77 ~~~t~L~~A~---~~g~~eivk~LL~~g~~~~~~d~~g~t~L~---~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L  150 (596)
                      .|.||||+|+   ..++.++++.|++.+......  ...++++   .|+..|+.+++++|++.|++++..+.  .|.|||
T Consensus       246 ~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~--~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~--~G~TPL  321 (764)
T PHA02716        246 NGMSPIMTYIINIDNINPEITNIYIESLDGNKVK--NIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDS--AGRTCL  321 (764)
T ss_pred             CCCCHHHHHHHhhhccCHHHHHHHHHhccccccc--cchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCC--CCCCHH
Confidence            8999999875   456777888777753221111  1112232   36677788888888888777766543  377888


Q ss_pred             HHHHH--cCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH--------------cCCHHHHHHHHhcCCCcccccCCCC
Q psy904          151 MLAAM--NGHTAAVKLLLDMGSDINAQIETNRNTALTLACF--------------QGRHEVVSLLLDRKANVEHRAKTGL  214 (596)
Q Consensus       151 ~~A~~--~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~--------------~~~~~ii~~Ll~~g~~~~~~~~~g~  214 (596)
                      |+|+.  +++.+++++|++.|++++.. +..|.||||+|+.              .++.+++++|+++|++++..+..|.
T Consensus       322 H~Aaa~~~~~~eIVklLLe~GADIN~k-D~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~  400 (764)
T PHA02716        322 HQYILRHNISTDIIKLLHEYGNDLNEP-DNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGY  400 (764)
T ss_pred             HHHHHHhCCCchHHHHHHHcCCCCccC-CCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCC
Confidence            87653  45677888888888877765 5677788887654              2567788888888888887788888


Q ss_pred             hHHHH----HHhcCcHHHHHHHHhCCCCC---------------------------------------------------
Q psy904          215 TPLME----AASGGYVEVGRVLLDKGADV---------------------------------------------------  239 (596)
Q Consensus       215 t~L~~----A~~~g~~~iv~~Ll~~g~~~---------------------------------------------------  239 (596)
                      ||||.    |...++.+++++|++.|+..                                                   
T Consensus       401 TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~  480 (764)
T PHA02716        401 TPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVY  480 (764)
T ss_pred             ChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhh
Confidence            88873    22345677777777654310                                                   


Q ss_pred             --------CCCCCCCCCCcHHHHHHHcCcH-----HHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH-----HHHHHHH
Q psy904          240 --------NAPPVPSSRDTALTIAADKGHC-----RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL-----SVVELLC  301 (596)
Q Consensus       240 --------~~~~~~~~g~t~L~~A~~~~~~-----~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~-----~iv~~Ll  301 (596)
                              +....+..|.||||+|+..|+.     +++++|+++|+|+|.+|..|.||||+|+..|+.     ++|++||
T Consensus       481 ~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL  560 (764)
T PHA02716        481 HCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNIL  560 (764)
T ss_pred             HHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHH
Confidence                    0111356799999999999876     456999999999999999999999999999976     9999999


Q ss_pred             HCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          302 KHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       302 ~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      ++|++++..      .|++|...++.+++.+|..+++.
T Consensus       561 ~~ga~~~~~------~l~~~~~~~~~~~~~ll~~~~~~  592 (764)
T PHA02716        561 DKRPNVDIV------IIFLDKCYANGKFPSLLLSEDDI  592 (764)
T ss_pred             hcCCCcchH------HHHHHhhhhhhHHHHHHHHcchh
Confidence            999998876      48999999999999999999875

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=359.35  Aligned_cols=288  Identities=18%  Similarity=0.227  Sum_probs=256.3

Q ss_pred             CCCCccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCCCccccccCCCC
Q psy904            2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAG--HDKVVDILLNHKADMEAQSERTKD   79 (596)
Q Consensus         2 di~~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g--~~eiv~~Ll~~~~~~~~~~~~~~~   79 (596)
                      |+|. .+.+|.||||+||..|+.++|++|+++|++++..|..|.||||+|+..+  ..+++++|+++|++++...+..|.
T Consensus        64 dvn~-~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~  142 (446)
T PHA02946         64 SPNE-TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC  142 (446)
T ss_pred             CCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence            4554 5678999999999999999999999999999999999999999999876  489999999999999877778899


Q ss_pred             hHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC--CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC
Q psy904           80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG--YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG  157 (596)
Q Consensus        80 t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g--~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g  157 (596)
                      |||| |+..|+.+++++|++.|++++..|..|.||||+|+..+  +.+++++|++.|++++..+.+  |.||||+|+..|
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~--G~TpLH~Aa~~~  219 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHD--GNTPLHIVCSKT  219 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCC--CCCHHHHHHHcC
Confidence            9997 66779999999999999999999999999999998755  468999999999999876644  999999999986


Q ss_pred             --CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC-HHHHHHHHhcCCCccc--------------------c-cCCC
Q psy904          158 --HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR-HEVVSLLLDRKANVEH--------------------R-AKTG  213 (596)
Q Consensus       158 --~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-~~ii~~Ll~~g~~~~~--------------------~-~~~g  213 (596)
                        +.+++++|+. |++++.. +..|.||||+|+..++ .+++++|+..|..++.                    . ...|
T Consensus       220 ~~~~~iv~lLl~-gadin~~-d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~  297 (446)
T PHA02946        220 VKNVDIINLLLP-STDVNKQ-NKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYD  297 (446)
T ss_pred             CCcHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccC
Confidence              8899999985 8898876 7789999999999988 4899999998765321                    1 1347


Q ss_pred             ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCc
Q psy904          214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH  293 (596)
Q Consensus       214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~  293 (596)
                      .||||+|+..|+.+++++|+++|+         .|.||||+|+..++.+++++|+.+|++++.. ..|.||||+|+..++
T Consensus       298 ~TpLh~Aa~~g~~eivk~Ll~~~~---------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~  367 (446)
T PHA02946        298 STDFKMAVEVGSIRCVKYLLDNDI---------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNN  367 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCC---------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCC
Confidence            799999999999999999999874         4679999999999999999999999999986 589999999999999


Q ss_pred             HHHHHHHHHCCC
Q psy904          294 LSVVELLCKHGA  305 (596)
Q Consensus       294 ~~iv~~Ll~~ga  305 (596)
                      .++++.|+.+..
T Consensus       368 ~~~~~~ll~~~~  379 (446)
T PHA02946        368 PVILSKLMLHNP  379 (446)
T ss_pred             HHHHHHHHhcCc
Confidence            999999999643

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.1e-42  Score=368.71  Aligned_cols=290  Identities=27%  Similarity=0.338  Sum_probs=266.5

Q ss_pred             HHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcC---CHHHHHHHHhCCCCccccccCCCChHHHHHHHCC-cH
Q psy904           16 TLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAG---HDKVVDILLNHKADMEAQSERTKDTPLSLACSGG-RY   91 (596)
Q Consensus        16 ~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g---~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g-~~   91 (596)
                      ..++..+++++|++|++.|++++..+..|.||||+|+..|   +.+++++|+++|++++... ..|.||||+|+..| +.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~-~~g~TpLh~A~~~~~~~   97 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPE-RCGFTPLHLYLYNATTL   97 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCcH
Confidence            4567789999999999999999999999999999999999   9999999999999998764 48999999999999 59


Q ss_pred             HHHHHHHhCCCCccCCCCCCCcHHHHHH--hcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC--CHHHHHHHHh
Q psy904           92 EVVELLLTRGANKEHRNVSDYTPLSLAA--SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG--HTAAVKLLLD  167 (596)
Q Consensus        92 eivk~LL~~g~~~~~~d~~g~t~L~~A~--~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~eiv~~Ll~  167 (596)
                      +++++|+++|++++..+..|.||||+|+  ..++.+++++|++.|++++....  .|.||||+|+..+  +.+++++|++
T Consensus        98 ~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~--~g~tpL~~a~~~~~~~~~iv~~Ll~  175 (471)
T PHA03095         98 DVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL--YGMTPLAVLLKSRNANVELLRLLID  175 (471)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC--CCCCHHHHHHHcCCCCHHHHHHHHH
Confidence            9999999999999999999999999999  56688999999999999887654  4899999998876  6899999999


Q ss_pred             cCCCcccccccCCCcHHHHHHHc--CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcH--HHHHHHHhCCCCCCCCC
Q psy904          168 MGSDINAQIETNRNTALTLACFQ--GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV--EVGRVLLDKGADVNAPP  243 (596)
Q Consensus       168 ~~~~~~~~~~~~~~t~L~~A~~~--~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--~iv~~Ll~~g~~~~~~~  243 (596)
                      .|++++.. +..|.||||.++..  ++..+++.|++.|++++..+..|.||||+|+..|+.  .++..|+..|++++.  
T Consensus       176 ~g~~~~~~-d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~--  252 (471)
T PHA03095        176 AGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA--  252 (471)
T ss_pred             cCCCCccc-CCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCC--
Confidence            99999887 88899999999875  788999999999999999999999999999999875  578889999999988  


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCC
Q psy904          244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD  311 (596)
Q Consensus       244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~  311 (596)
                      .+..|.||||+|+..|+.+++++|+++|+|++..|..|.||||+|+..|+.+++++|+..|++++...
T Consensus       253 ~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~~  320 (471)
T PHA03095        253 RNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETVA  320 (471)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHHH
Confidence            55789999999999999999999999999999999999999999999999999999999999886543

>KOG0510|consensus

Probab=100.00  E-value=1.8e-42  Score=358.90  Aligned_cols=311  Identities=30%  Similarity=0.383  Sum_probs=226.3

Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904            6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA   85 (596)
Q Consensus         6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A   85 (596)
                      ..|+.++|+||+|+.....+.|++|++.|++++..+..+.+|+|+|+..|+..+++.|++.|.+++.. +..+.||||.|
T Consensus        83 a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~-de~~~TpLh~A  161 (929)
T KOG0510|consen   83 AKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLE-DENGFTPLHLA  161 (929)
T ss_pred             hhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCcccc-ccCCCchhhHH
Confidence            34667777888888888888888888888877777777778888888888888888888877776654 45677788888


Q ss_pred             HHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHh-----CCCCccccCCCCCCCcHHHHHHHcCCHH
Q psy904           86 CSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT-----HGAEINSRTGSKLGISPLMLAAMNGHTA  160 (596)
Q Consensus        86 ~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~-----~g~~~~~~~~~~~g~t~L~~A~~~g~~e  160 (596)
                      |..++.++.+.|++.|+++...|.+|.+|+|.|+.+|..++++.++.     .+..++.....  +.+|||.|+..|+++
T Consensus       162 ~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~--~~~pLhlAve~g~~e  239 (929)
T KOG0510|consen  162 ARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNE--KATPLHLAVEGGDIE  239 (929)
T ss_pred             HhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCC--CCcchhhhhhcCCHH
Confidence            88777777777777787777777777788888888888877777776     44445544433  677788888888888


Q ss_pred             HHHHHHhcCCCcccc--------------cccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcH
Q psy904          161 AVKLLLDMGSDINAQ--------------IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV  226 (596)
Q Consensus       161 iv~~Ll~~~~~~~~~--------------~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  226 (596)
                      +++.+++.|......              .|.+|.||||+|+..|+++.++.|+..|++++.++.++.||||.|+..|++
T Consensus       240 ~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~  319 (929)
T KOG0510|consen  240 MLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRI  319 (929)
T ss_pred             HHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccH
Confidence            887777776543211              245667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHh-CCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC---CCCCCCChHHHHHHhcCcHHHHHHHHH
Q psy904          227 EVGRVLLD-KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE---VKNKKGNSPLWLAANGGHLSVVELLCK  302 (596)
Q Consensus       227 ~iv~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~---~~d~~g~TpL~~A~~~g~~~iv~~Ll~  302 (596)
                      +.++.||+ .|.. ..+..+..|.||||+|+..|+..+++.|++.|++..   ..|.+|+||||+|+..|+..+|++|+.
T Consensus       320 ntv~rLL~~~~~r-llne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~  398 (929)
T KOG0510|consen  320 NTVERLLQESDTR-LLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS  398 (929)
T ss_pred             HHHHHHHhCcCcc-ccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH
Confidence            77777777 3322 223355677777777777777777777777777665   447777777777777777777777777


Q ss_pred             CCCCcccCCCCCCCHHHH
Q psy904          303 HGADIDSQDNRKVSCLMA  320 (596)
Q Consensus       303 ~gad~~~~~~~g~t~L~~  320 (596)
                      +|+++...|..|.+++++
T Consensus       399 ~Ga~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  399 HGADIGVKNKKGKSAFDT  416 (929)
T ss_pred             cCCceeeccccccccccc
Confidence            777777777777777664

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.2e-41  Score=355.51  Aligned_cols=311  Identities=23%  Similarity=0.324  Sum_probs=274.6

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC   86 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~   86 (596)
                      .+..|.||||.|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++...           ++
T Consensus        31 ~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~-----------~~   99 (434)
T PHA02874         31 SVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL-----------PI   99 (434)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc-----------hh
Confidence            3567899999999999999999999999999999999999999999999999999999999875421           23


Q ss_pred             HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy904           87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL  166 (596)
Q Consensus        87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll  166 (596)
                      ...+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++....  .|.||||+|+..|+.+++++|+
T Consensus       100 ~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~--~g~tpLh~A~~~~~~~iv~~Ll  177 (434)
T PHA02874        100 PCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD--NGCYPIHIAIKHNFFDIIKLLL  177 (434)
T ss_pred             ccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC--CCCCHHHHHHHCCcHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999887654  4999999999999999999999


Q ss_pred             hcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCC
Q psy904          167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS  246 (596)
Q Consensus       167 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~  246 (596)
                      +.|++++.. +..|.||||.|+..|+.+++++|++.|++++..+..|.||||.|+..+. .++.+|+ .|++++.  .+.
T Consensus       178 ~~g~~~n~~-~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~--~d~  252 (434)
T PHA02874        178 EKGAYANVK-DNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASIND--QDI  252 (434)
T ss_pred             HCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCC--cCC
Confidence            999998876 6788999999999999999999999999999999999999999999765 5666666 5777776  667


Q ss_pred             CCCcHHHHHHHcC-cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcC-cHHHHHHHHHCCCCcccCCCCC-CCHHHHHHH
Q psy904          247 SRDTALTIAADKG-HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG-HLSVVELLCKHGADIDSQDNRK-VSCLMAAFR  323 (596)
Q Consensus       247 ~g~t~L~~A~~~~-~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~gad~~~~~~~g-~t~L~~A~~  323 (596)
                      .|.||||+|+..+ +.+++++|+++|++++.+|..|.||||+|+..+ ...+++.|+..++.++..+..+ .+++..+..
T Consensus       253 ~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~~~~~~~~~~~~~~~~~~i  332 (434)
T PHA02874        253 DGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSDFLEHIEI  332 (434)
T ss_pred             CCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCchhhccccchhHHHHHHHH
Confidence            8999999999876 789999999999999999999999999999887 7789999999998876655544 455666666


Q ss_pred             cCCHHHHHHHHh
Q psy904          324 KGHVKAVRWMVN  335 (596)
Q Consensus       324 ~g~~~iv~~Ll~  335 (596)
                      .++..+..++..
T Consensus       333 ~~~~~~~~~~~~  344 (434)
T PHA02874        333 KDNKEFSDFIKE  344 (434)
T ss_pred             hccchHHHHHHH
Confidence            666666555554

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.6e-41  Score=355.31  Aligned_cols=336  Identities=14%  Similarity=0.152  Sum_probs=275.7

Q ss_pred             CCCCccCCCCCcHHHHHHhcC--cHHHHHHHHHCCC--CccccCCCCCcHHHHHHH--cCCHHHHHHHHh-CCCCccccc
Q psy904            2 DVDSETESNHDTALTLACAGG--HEELVELLLSRGA--DIEHRDKKGFTPLILAAT--AGHDKVVDILLN-HKADMEAQS   74 (596)
Q Consensus         2 di~~~~d~~g~t~L~~A~~~g--~~~ivk~Ll~~g~--~i~~~d~~g~t~L~~A~~--~g~~eiv~~Ll~-~~~~~~~~~   74 (596)
                      |++ ..|..|.||||+|+..|  +.++|++|++.|+  +++..+.-+.+||+.++.  +++.++|++|+. .+.+++...
T Consensus        69 din-~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~  147 (672)
T PHA02730         69 ERL-CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNT  147 (672)
T ss_pred             CCc-ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhh
Confidence            555 34789999999999976  7999999999965  457777778999999999  889999999996 556665443


Q ss_pred             c----CCCChHHHHHHHCCcHHHHHHHHhCCCCccC-------CCCCCC-cHHHHHH------hcCCHHHHHHHHhCCCC
Q psy904           75 E----RTKDTPLSLACSGGRYEVVELLLTRGANKEH-------RNVSDY-TPLSLAA------SGGYVNIIKLLLTHGAE  136 (596)
Q Consensus        75 ~----~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~-------~d~~g~-t~L~~A~------~~g~~eiv~~Ll~~g~~  136 (596)
                      +    ..|.+|++++...++++||++|+++|++++-       .+.... |.||+++      .+++.+++++|+++|++
T Consensus       148 ~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad  227 (672)
T PHA02730        148 NYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS  227 (672)
T ss_pred             hhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC
Confidence            2    3688999999999999999999999999852       222333 5555333      56789999999999999


Q ss_pred             ccccCCCCCCCcHHHH--HHHcCCHHHHHHHHh--------------------------------cCCCccc--------
Q psy904          137 INSRTGSKLGISPLML--AAMNGHTAAVKLLLD--------------------------------MGSDINA--------  174 (596)
Q Consensus       137 ~~~~~~~~~g~t~L~~--A~~~g~~eiv~~Ll~--------------------------------~~~~~~~--------  174 (596)
                      ++..+.+  |.||||+  +...|+.+++++|+.                                +|++...        
T Consensus       228 IN~kd~~--G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  305 (672)
T PHA02730        228 IHGRDEG--GSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGR  305 (672)
T ss_pred             CCCCCCC--CCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhcc
Confidence            9888765  9999995  555677999999999                                6766533        


Q ss_pred             -----------ccccCCCc---------------------HHHHHHHcC---CHHHHHHHHhcCCCcccccCCCChHHHH
Q psy904          175 -----------QIETNRNT---------------------ALTLACFQG---RHEVVSLLLDRKANVEHRAKTGLTPLME  219 (596)
Q Consensus       175 -----------~~~~~~~t---------------------~L~~A~~~~---~~~ii~~Ll~~g~~~~~~~~~g~t~L~~  219 (596)
                                 +.+..|.+                     .||.-..++   +.+++++|+++|++++.. ..|.||||+
T Consensus       306 ~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~  384 (672)
T PHA02730        306 HTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHD  384 (672)
T ss_pred             CcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHH
Confidence                       12333433                     566666655   689999999999999985 789999999


Q ss_pred             HHhcCc----HHHHHHHHhCCCCCCCCCCCCCCCcHHHH---HHHcC---------cHHHHHHHHHCCCCCCCCCCCCCh
Q psy904          220 AASGGY----VEVGRVLLDKGADVNAPPVPSSRDTALTI---AADKG---------HCRFVELLLSKGAQVEVKNKKGNS  283 (596)
Q Consensus       220 A~~~g~----~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~---A~~~~---------~~~iv~~Ll~~g~di~~~d~~g~T  283 (596)
                      |+..++    .+++++|+++|++.+....+..|.||||.   |...+         ..+++++|+++|+|+|.+|..|.|
T Consensus       385 Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~T  464 (672)
T PHA02730        385 YFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKT  464 (672)
T ss_pred             HHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCC
Confidence            988775    89999999999854444466789999984   33332         235799999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHCCCCcccCCC-CCCCHHHHHHH--cCCHHHHHHHHhCcCCCC
Q psy904          284 PLWLAANGGHLSVVELLCKHGADIDSQDN-RKVSCLMAAFR--KGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       284 pL~~A~~~g~~~iv~~Ll~~gad~~~~~~-~g~t~L~~A~~--~g~~~iv~~Ll~~~~~~~  341 (596)
                      |||+|+..++.+++++|+.+|++++..+. .|.|||++|+.  .++.+++++|+++|+.+.
T Consensus       465 PLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        465 LLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999996 69999999987  479999999999999764

>KOG0510|consensus

Probab=100.00  E-value=1.1e-41  Score=352.90  Aligned_cols=323  Identities=30%  Similarity=0.365  Sum_probs=292.7

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      +..|+|++|.|+..+++      ++.-......|..|.+|||+|+.....+.|++|++.|+++... +..+.+|+|+|+.
T Consensus        58 ~~~gd~~~~~~~~~~y~------~~~~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~-n~~~~aplh~A~~  130 (929)
T KOG0510|consen   58 RAFGDTELHHASARNYI------LSKLAISYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLR-NLNKNAPLHLAAD  130 (929)
T ss_pred             hhhchhHHHHHHhhcch------hhhhhhhhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChh-hhhccCchhhccc
Confidence            45688999999998877      4444556778889999999999999999999999999998765 5678999999999


Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD  167 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~  167 (596)
                      .|++.+++.|+++|++++..|..+.||||+|+..++.+..+.|+..|+++.-.+.+  |.+|+|.|+.+|..++.+.++.
T Consensus       131 ~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~--~~~~iH~aa~s~s~e~mEi~l~  208 (929)
T KOG0510|consen  131 SGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDID--GNFPIHEAARSGSKECMEIFLP  208 (929)
T ss_pred             cchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCc--CCchHHHHHHhcchhhhhhhhc
Confidence            99999999999999999999999999999999999999989999999988766654  8999999999999999999998


Q ss_pred             -----cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCc---------------ccccCCCChHHHHHHhcCcHH
Q psy904          168 -----MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV---------------EHRAKTGLTPLMEAASGGYVE  227 (596)
Q Consensus       168 -----~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~---------------~~~~~~g~t~L~~A~~~g~~~  227 (596)
                           .+..++.. +..+.+|||.|+..|+.++++.+++.|..+               +..|.+|.||||+|++.|+.+
T Consensus       209 ~~g~~r~~~in~~-~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~  287 (929)
T KOG0510|consen  209 EHGYERQTHINFD-NNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPE  287 (929)
T ss_pred             cccchhhcccccc-cCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChh
Confidence                 55666665 677889999999999999999999986542               345788999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-CC-CCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS-KG-AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       228 iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~-~g-~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      .+..|+..|++++.  .+.++.||||.|+.+|++..|+-||+ .| ..+|..|..|.||||.|+..||..++++|++.||
T Consensus       288 svd~Ll~~Ga~I~~--kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA  365 (929)
T KOG0510|consen  288 SVDNLLGFGASINS--KNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGA  365 (929)
T ss_pred             HHHHHHHcCCcccc--cCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcCh
Confidence            99999999999998  55889999999999999999999999 54 5678889999999999999999999999999999


Q ss_pred             Ccc---cCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCC
Q psy904          306 DID---SQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPS  342 (596)
Q Consensus       306 d~~---~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~  342 (596)
                      ...   ..|.+|.||||.|+..|+..+|++|+.+|+++..
T Consensus       366 ~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  366 LFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             hhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence            877   5699999999999999999999999999999855

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-40  Score=357.49  Aligned_cols=287  Identities=27%  Similarity=0.321  Sum_probs=265.8

Q ss_pred             HHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCC---cHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC-CH
Q psy904           49 ILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG---RYEVVELLLTRGANKEHRNVSDYTPLSLAASGG-YV  124 (596)
Q Consensus        49 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g---~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g-~~  124 (596)
                      ..++..+++++|++|+++|++++.. +..|.||||+|+..|   +.+++++|++.|++++..+..|.||||+|+..| +.
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~-~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~   97 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFR-GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTL   97 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccC-CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcH
Confidence            4567788999999999999998764 667999999999998   999999999999999999999999999999999 59


Q ss_pred             HHHHHHHhCCCCccccCCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC--CHHHHHHHH
Q psy904          125 NIIKLLLTHGAEINSRTGSKLGISPLMLAA--MNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG--RHEVVSLLL  200 (596)
Q Consensus       125 eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~--~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~--~~~ii~~Ll  200 (596)
                      +++++|+++|++++.....  |.||||+|+  ..++.+++++|++.|++++.. +..|.||||+|+..+  +.+++++|+
T Consensus        98 ~iv~lLl~~ga~in~~~~~--g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~-d~~g~tpL~~a~~~~~~~~~iv~~Ll  174 (471)
T PHA03095         98 DVIKLLIKAGADVNAKDKV--GRTPLHVYLSGFNINPKVIRLLLRKGADVNAL-DLYGMTPLAVLLKSRNANVELLRLLI  174 (471)
T ss_pred             HHHHHHHHcCCCCCCCCCC--CCCHHHHHhhCCcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence            9999999999998876644  999999999  567899999999999999876 678899999999876  689999999


Q ss_pred             hcCCCcccccCCCChHHHHHHhc--CcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcH--HHHHHHHHCCCCCCC
Q psy904          201 DRKANVEHRAKTGLTPLMEAASG--GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC--RFVELLLSKGAQVEV  276 (596)
Q Consensus       201 ~~g~~~~~~~~~g~t~L~~A~~~--g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~--~iv~~Ll~~g~di~~  276 (596)
                      +.|++++..+..|.||||+++..  +...++++|++.|++++.  .+..|.||||+|+..|+.  .++..|+..|++++.
T Consensus       175 ~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~--~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~  252 (471)
T PHA03095        175 DAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA--TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA  252 (471)
T ss_pred             HcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCC
Confidence            99999999999999999999864  788999999999999988  668999999999999975  588999999999999


Q ss_pred             CCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904          277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       277 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  341 (596)
                      +|..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+.+++++.
T Consensus       253 ~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        253 RNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999998754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=359.21  Aligned_cols=282  Identities=30%  Similarity=0.373  Sum_probs=198.4

Q ss_pred             CcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHH-----HHHCCcHHHHHH
Q psy904           22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSL-----ACSGGRYEVVEL   96 (596)
Q Consensus        22 g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~-----A~~~g~~eivk~   96 (596)
                      ....++++++..+...+..+..+.||||+|+..|+.++|++|+++|++++.. +..+.||||+     |+..|+.+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~-~~~~~t~L~~~~~~~a~~~~~~~iv~~   91 (480)
T PHA03100         13 IKVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSS-TKNNSTPLHYLSNIKYNLTDVKEIVKL   91 (480)
T ss_pred             HHHHHHHHHHhcCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCc-cccCcCHHHHHHHHHHHhhchHHHHHH
Confidence            4457778888777666677777888888888888888888888888877653 4457788888     888888888888


Q ss_pred             HHhCCCCccCCCCCCCcHHHHHH--hcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCc
Q psy904           97 LLTRGANKEHRNVSDYTPLSLAA--SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG--HTAAVKLLLDMGSDI  172 (596)
Q Consensus        97 LL~~g~~~~~~d~~g~t~L~~A~--~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~eiv~~Ll~~~~~~  172 (596)
                      |++.|++++..+..|.||||+|+  ..|+.+++++|+++|++++....  .|.||||+|+..|  +.+++++|+++|+++
T Consensus        92 Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di  169 (480)
T PHA03100         92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS--DGENLLHLYLESNKIDLKILKLLIDKGVDI  169 (480)
T ss_pred             HHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCC--CCCcHHHHHHHcCCChHHHHHHHHHCCCCc
Confidence            88888888888888888888888  88888888888888877765543  3777888888777  777777777777777


Q ss_pred             ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC------ChHHHHHHhcCc--HHHHHHHHhCCCCCCCCCC
Q psy904          173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG------LTPLMEAASGGY--VEVGRVLLDKGADVNAPPV  244 (596)
Q Consensus       173 ~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g------~t~L~~A~~~g~--~~iv~~Ll~~g~~~~~~~~  244 (596)
                      +.. +..|.||||.|+..|+.+++++|+++|++++..+..|      .||||.|+..|+  .+++++|++.|++++.  .
T Consensus       170 n~~-d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~--~  246 (480)
T PHA03100        170 NAK-NRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINI--K  246 (480)
T ss_pred             ccc-cCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCC--C
Confidence            665 4467777777777777777777777777777777666      555555555555  5555555555555554  3


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCccc
Q psy904          245 PSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS  309 (596)
Q Consensus       245 ~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~  309 (596)
                      +..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++.+++++|+++|++++.
T Consensus       247 d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        247 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHH
Confidence            34555555555555555555555555555555555555555555555555555555555555543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-40  Score=356.62  Aligned_cols=271  Identities=31%  Similarity=0.430  Sum_probs=254.6

Q ss_pred             CCCCccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHH-----HHHcCCHHHHHHHHhCCCCccccccC
Q psy904            2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLIL-----AATAGHDKVVDILLNHKADMEAQSER   76 (596)
Q Consensus         2 di~~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~-----A~~~g~~eiv~~Ll~~~~~~~~~~~~   76 (596)
                      |++...+..+.||||+|+..|+.++|++|++.|++++..+..|.||||+     |+..|+.+++++|+++|++++ ..+.
T Consensus        26 ~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~  104 (480)
T PHA03100         26 DLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDN  104 (480)
T ss_pred             ccchhhhcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC-CCCC
Confidence            4666778899999999999999999999999999999999999999999     999999999999999999994 4567


Q ss_pred             CCChHHHHHH--HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC--CHHHHHHHHhCCCCccccCCCCCCCcHHHH
Q psy904           77 TKDTPLSLAC--SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG--YVNIIKLLLTHGAEINSRTGSKLGISPLML  152 (596)
Q Consensus        77 ~~~t~L~~A~--~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g--~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~  152 (596)
                      .|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+++++|+++|++++....  .|.||||+
T Consensus       105 ~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~--~g~tpL~~  182 (480)
T PHA03100        105 NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR--YGYTPLHI  182 (480)
T ss_pred             CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccC--CCCCHHHH
Confidence            8999999999  999999999999999999999999999999999999  99999999999999887765  59999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCC------CcHHHHHHHcCC--HHHHHHHHhcCCCcccccCCCChHHHHHHhcC
Q psy904          153 AAMNGHTAAVKLLLDMGSDINAQIETNR------NTALTLACFQGR--HEVVSLLLDRKANVEHRAKTGLTPLMEAASGG  224 (596)
Q Consensus       153 A~~~g~~eiv~~Ll~~~~~~~~~~~~~~------~t~L~~A~~~~~--~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  224 (596)
                      |+..|+.+++++|+++|++++.. +..+      .||||.|+..++  .+++++|++.|++++..+..|.||||+|+..|
T Consensus       183 A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~  261 (480)
T PHA03100        183 AVEKGNIDVIKFLLDNGADINAG-DIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNN  261 (480)
T ss_pred             HHHhCCHHHHHHHHHcCCCccCC-CCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            99999999999999999998876 4445      799999999999  99999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC
Q psy904          225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN  278 (596)
Q Consensus       225 ~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d  278 (596)
                      +.+++++|++.|++++.  .+..|.||||+|+..++.+++++|+++|++++..+
T Consensus       262 ~~~iv~~Ll~~gad~n~--~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~~i~  313 (480)
T PHA03100        262 NPEFVKYLLDLGANPNL--VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTII  313 (480)
T ss_pred             CHHHHHHHHHcCCCCCc--cCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHHHHH
Confidence            99999999999999887  66899999999999999999999999999887654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-38  Score=342.68  Aligned_cols=287  Identities=24%  Similarity=0.273  Sum_probs=209.5

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHH
Q psy904           40 RDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA  119 (596)
Q Consensus        40 ~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~  119 (596)
                      .+..+.||||+|+..|+.++|++|++.|++++.. +..|.||||+||..|+.+++++|+..+.....  ..+.++++.|+
T Consensus        33 ~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~l~~a~  109 (477)
T PHA02878         33 ASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIRSINKCSV--FYTLVAIKDAF  109 (477)
T ss_pred             ccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHCccHhHHHHHHHHHhcccc--ccchhhHHHHH
Confidence            3445667777777777777777777777666543 45667777777777777777777766544333  34566777777


Q ss_pred             hcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHH
Q psy904          120 SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN--GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVS  197 (596)
Q Consensus       120 ~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~--g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~  197 (596)
                      ..++.+++++|+..+.+.....    ....+......  .+.+++++|+++|++++......|.||||+|+..|+.++++
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~----~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~  185 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTI----DLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTE  185 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccC----cHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHH
Confidence            7777777777776543322111    00111111111  23458888888888888764444888888888888888888


Q ss_pred             HHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc-CcHHHHHHHHHCCCCCCC
Q psy904          198 LLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK-GHCRFVELLLSKGAQVEV  276 (596)
Q Consensus       198 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~-~~~~iv~~Ll~~g~di~~  276 (596)
                      +|++.|++++..+..|.||||.|+..|+.+++++|++.|++++.  .+..|.||||+|+.. ++.+++++|+++|++++.
T Consensus       186 ~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~--~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~  263 (477)
T PHA02878        186 LLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA--RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA  263 (477)
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCc
Confidence            88888888888888888999998888888889988888888887  557888899988865 688888999998988888


Q ss_pred             CCC-CCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcC-CHHHHHHHHhCc
Q psy904          277 KNK-KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG-HVKAVRWMVNHV  337 (596)
Q Consensus       277 ~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g-~~~iv~~Ll~~~  337 (596)
                      .+. .|.||||+|  .++.+++++|+++|+|++..|..|.|||++|+..+ ..+++++|+.++
T Consensus       264 ~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        264 KSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             cCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence            875 788999988  46788888999999999888888999998888653 556777776653

>KOG4177|consensus

Probab=100.00  E-value=2.7e-40  Score=364.10  Aligned_cols=329  Identities=37%  Similarity=0.514  Sum_probs=228.0

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccc------------
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS------------   74 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~------------   74 (596)
                      .+..|.||||.|+..|+++++.+|+.+|+.++..+..|.||+|+|++.+..+++++|+++|+++....            
T Consensus       238 ~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~~vr~~tplh~AA~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~  317 (1143)
T KOG4177|consen  238 KDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVSTVRGETPLHMAARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASR  317 (1143)
T ss_pred             ccccCccHHHHHHhccchhHHHHHHhcccccCcccccccCcchhhhccchhhhHhhhhccCcccccccccccChhhhhcc
Confidence            46678888888888888888888888888888888888888888888888888888888887764321            


Q ss_pred             --------------------cCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCC
Q psy904           75 --------------------ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG  134 (596)
Q Consensus        75 --------------------~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g  134 (596)
                                          ...+.+|||+++..++.++..+|+..+......+..+.||+|.|+..|..+++++++..|
T Consensus       318 ~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~g  397 (1143)
T KOG4177|consen  318 LGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAG  397 (1143)
T ss_pred             cchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhcc
Confidence                                112334444444444444444444444444444556777777777777777777777777


Q ss_pred             CCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC-CHHHHHHHHhcCCCcccccCCC
Q psy904          135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG-RHEVVSLLLDRKANVEHRAKTG  213 (596)
Q Consensus       135 ~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~-~~~ii~~Ll~~g~~~~~~~~~g  213 (596)
                      .+++.....  |.||||.++..++..+++.++..|++.+.. +..|.|++|.|+..+ ..++...++..|.+++.....|
T Consensus       398 a~~~~~gk~--gvTplh~aa~~~~~~~v~l~l~~gA~~~~~-~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G  474 (1143)
T KOG4177|consen  398 ADPNSAGKN--GVTPLHVAAHYGNPRVVKLLLKRGASPNAK-AKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQG  474 (1143)
T ss_pred             CCcccCCCC--CcceeeehhhccCcceEEEEeccCCChhhH-hhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcccc
Confidence            775554433  666666666666666666666666666554 445566666666666 5555566666666666666666


Q ss_pred             ChHHHHHHhcCcHHHHHHHHh---------------------------------CCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904          214 LTPLMEAASGGYVEVGRVLLD---------------------------------KGADVNAPPVPSSRDTALTIAADKGH  260 (596)
Q Consensus       214 ~t~L~~A~~~g~~~iv~~Ll~---------------------------------~g~~~~~~~~~~~g~t~L~~A~~~~~  260 (596)
                      .||||+|+..|+.+++..|++                                 +|++++.  ....|+||||.||..|+
T Consensus       475 ~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~--~~~r~~TpLh~A~~~g~  552 (1143)
T KOG4177|consen  475 FTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL--RTGRGYTPLHVAVHYGN  552 (1143)
T ss_pred             CcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh--hcccccchHHHHHhcCC
Confidence            666666666666555555544                                 4544444  34567778888888888


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904          261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF  340 (596)
Q Consensus       261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  340 (596)
                      +.+|++||++|+|++.+++.|+||||.|+..|+.+|+.+|+++|+++|..+.+|.|||++|++.|+++++++|+..++..
T Consensus       553 v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  553 VDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             chHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            88888888888888888877888888888888888888888888888888888888888888888888888887777653

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.2e-39  Score=345.64  Aligned_cols=306  Identities=23%  Similarity=0.265  Sum_probs=257.2

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      ...+.||||+||..|+.++|++|++.|++++..|..|.||||+||..|+.+++++|+..+.....   ..+.++++.|+.
T Consensus        34 ~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~l~~a~~  110 (477)
T PHA02878         34 SLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYTLVAIKDAFN  110 (477)
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccchhhHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999998765544   457799999999


Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC--CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG--YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL  165 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g--~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~L  165 (596)
                      .++.+++++|+..+.......  ....+......+  ..+++++|+++|++++..... .|.||||+|+.+|+.+++++|
T Consensus       111 ~~~~ei~~~Ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~-~g~tpLh~A~~~~~~~iv~~L  187 (477)
T PHA02878        111 NRNVEIFKIILTNRYKNIQTI--DLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRH-KGNTALHYATENKDQRLTELL  187 (477)
T ss_pred             cCCHHHHHHHHhCcccCcccC--cHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCC-CCCCHHHHHHhCCCHHHHHHH
Confidence            999999999998765432111  111111111222  345999999999998876532 289999999999999999999


Q ss_pred             HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhc-CcHHHHHHHHhCCCCCCCCCC
Q psy904          166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG-GYVEVGRVLLDKGADVNAPPV  244 (596)
Q Consensus       166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~~~  244 (596)
                      +..|++++.. +..|.||||.|+..++.+++++|++.|++++..+..|.||||+|+.. ++.+++++|+++|++++... 
T Consensus       188 l~~gad~n~~-d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~-  265 (477)
T PHA02878        188 LSYGANVNIP-DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS-  265 (477)
T ss_pred             HHCCCCCCCc-CCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC-
Confidence            9999999876 77899999999999999999999999999999999999999999975 78999999999999998742 


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcC-cHHHHHHHHHC-----CCCcccCCCCCCCHH
Q psy904          245 PSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG-HLSVVELLCKH-----GADIDSQDNRKVSCL  318 (596)
Q Consensus       245 ~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~-----gad~~~~~~~g~t~L  318 (596)
                      ...|.||||+|  .++.+++++|+++|+|++..|..|.||||+|+..+ ..+++++|+.+     +.+++..+..|.++-
T Consensus       266 ~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~g~~~n  343 (477)
T PHA02878        266 YILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLKRIKPDIKNSEGFIDN  343 (477)
T ss_pred             CCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHHhccCcccCcHHHHHH
Confidence            23699999999  57889999999999999999999999999999754 56777777755     467777777776654


Q ss_pred             HHHHH
Q psy904          319 MAAFR  323 (596)
Q Consensus       319 ~~A~~  323 (596)
                      ..++.
T Consensus       344 ~~~i~  348 (477)
T PHA02878        344 MDCIT  348 (477)
T ss_pred             HHHHh
Confidence            44433

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.8e-37  Score=339.42  Aligned_cols=314  Identities=18%  Similarity=0.166  Sum_probs=252.4

Q ss_pred             HHHHHHHHHCCCCccccCCCCCcHHHHHHHc---CCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHH----HHHH
Q psy904           24 EELVELLLSRGADIEHRDKKGFTPLILAATA---GHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYE----VVEL   96 (596)
Q Consensus        24 ~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~e----ivk~   96 (596)
                      ++.|+.|+..|..++..|.+|.||||+|+..   |+.++|++|+++|++++.. +..|.||||+|+..|+.+    ++++
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~-~~~g~TpL~~Aa~~g~~~v~~~~~~~   90 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHK-NWRQLTPLEEYTNSRHVKVNKDIAMA   90 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCcccc-CCCCCCHHHHHHHcCChhHHHHHHHH
Confidence            6788999999999999999999999998655   8899999999999999754 678999999999999854    5678


Q ss_pred             HHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHH--HcCCHHHHHHHHhcCCCccc
Q psy904           97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAA--MNGHTAAVKLLLDMGSDINA  174 (596)
Q Consensus        97 LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~--~~g~~eiv~~Ll~~~~~~~~  174 (596)
                      |++.+...+..+  ..++++.|+.+|+.++|++|+++|++++..+.+  |.||||.++  .+|+.+++++|+++|++++.
T Consensus        91 Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~--g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~  166 (661)
T PHA02917         91 LLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCEN--HRSVIENYVMTDDPVPEIIDLFIENGCSVLY  166 (661)
T ss_pred             HHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCC--CccHHHHHHHccCCCHHHHHHHHHcCCCccc
Confidence            887654344433  236788899999999999999999999987654  999999654  57899999999999999875


Q ss_pred             cc--cc-----------CCCcHHHHHHH-----------cCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcH--HH
Q psy904          175 QI--ET-----------NRNTALTLACF-----------QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV--EV  228 (596)
Q Consensus       175 ~~--~~-----------~~~t~L~~A~~-----------~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~--~i  228 (596)
                      ..  +.           .+.||||+|+.           +++.+++++|++.|++++..+..|.||||+|+..|+.  ++
T Consensus       167 ~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~ei  246 (661)
T PHA02917        167 EDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDI  246 (661)
T ss_pred             cccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHH
Confidence            32  11           22599999986           4689999999999999999999999999999999985  78


Q ss_pred             HHHHHhCCCCCCCCC--CCCCCCcHHHHHH--------------------------------------------------
Q psy904          229 GRVLLDKGADVNAPP--VPSSRDTALTIAA--------------------------------------------------  256 (596)
Q Consensus       229 v~~Ll~~g~~~~~~~--~~~~g~t~L~~A~--------------------------------------------------  256 (596)
                      |++|+. |++++...  .+..|.+|+|+|+                                                  
T Consensus       247 vk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~  325 (661)
T PHA02917        247 VKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKT  325 (661)
T ss_pred             HHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHH
Confidence            998875 66553210  1112222222222                                                  


Q ss_pred             --------------HcCc--HHHHHHHHHCCCCCCCC------------------------------CCCCChHHHHHHh
Q psy904          257 --------------DKGH--CRFVELLLSKGAQVEVK------------------------------NKKGNSPLWLAAN  290 (596)
Q Consensus       257 --------------~~~~--~~iv~~Ll~~g~di~~~------------------------------d~~g~TpL~~A~~  290 (596)
                                    ..|.  .+++++|+++|++++.+                              +..|.||||.|+.
T Consensus       326 ~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~  405 (661)
T PHA02917        326 MNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCK  405 (661)
T ss_pred             hchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHH
Confidence                          2333  44788888888876543                              3468999999874


Q ss_pred             cC-----------------------cHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904          291 GG-----------------------HLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       291 ~g-----------------------~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  343 (596)
                      .+                       ..+++++|+.+|++++.+|..|.||||+|+..++.+++++|+.+|+++...
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~  481 (661)
T PHA02917        406 SNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIR  481 (661)
T ss_pred             hcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            33                       356889999999999999999999999999999999999999999987754

>KOG4177|consensus

Probab=100.00  E-value=6.7e-40  Score=361.04  Aligned_cols=334  Identities=38%  Similarity=0.582  Sum_probs=300.6

Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904            6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA   85 (596)
Q Consensus         6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A   85 (596)
                      -.+.+|.||||.||..+.+.+++.++.+|+++...|..|.+|||.|+..|+++++.+|+.+|+.++.. +..+.||+|.|
T Consensus       204 a~~~~~~tpl~~a~~~nri~~~eLll~~gadv~a~d~~gl~~lh~a~~~g~~~i~~~l~~~ga~~~~~-~vr~~tplh~A  282 (1143)
T KOG4177|consen  204 ASALNGFTPLHIACKKNRIKVVELLLKHGADVSAKDESGLTPLHVAAFMGHLDIVKLLLQHGASVNVS-TVRGETPLHMA  282 (1143)
T ss_pred             ccccCCCCchhhhccccccceeeeeeeccCcCCcccccCccHHHHHHhccchhHHHHHHhcccccCcc-cccccCcchhh
Confidence            35788999999999999999999999999999999999999999999999999999999999998875 57899999999


Q ss_pred             HHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccC------------------------
Q psy904           86 CSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRT------------------------  141 (596)
Q Consensus        86 ~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~------------------------  141 (596)
                      +..+..+++++|++.|+++...+....||+|.|...|+.+++.+++..++.++...                        
T Consensus       283 A~~~~~e~~~~ll~~ga~~~~~~~~~kt~l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~  362 (1143)
T KOG4177|consen  283 ARAGQVEVCKLLLQNGADVLAKARDDQTPLHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLE  362 (1143)
T ss_pred             hccchhhhHhhhhccCcccccccccccChhhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhc
Confidence            99999999999999999998888888888888888777777777777655443211                        


Q ss_pred             -------CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCC
Q psy904          142 -------GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGL  214 (596)
Q Consensus       142 -------~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~  214 (596)
                             ....+.+|+|+|+..|..++++.++..|.+++.. ...|.||||.++.+++..+++.+++.|++++..+..|+
T Consensus       363 ~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~-gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~  441 (1143)
T KOG4177|consen  363 HGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGADPNSA-GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGY  441 (1143)
T ss_pred             cccccCcccccCCcchhhhcccCchhHHHhhhhccCCcccC-CCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCC
Confidence                   2344899999999999999999999999997776 78899999999999999999999999999999999999


Q ss_pred             hHHHHHHhcC-cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-------------------------
Q psy904          215 TPLMEAASGG-YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL-------------------------  268 (596)
Q Consensus       215 t~L~~A~~~g-~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll-------------------------  268 (596)
                      ||+|+|+..| +.++...++..|.++|.  ....|.||||+|+..|+.+++..|+                         
T Consensus       442 T~lhvaa~~g~~~~~~~~l~~~g~~~n~--~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  442 TPLHVAAKKGRYLQIARLLLQYGADPNA--VSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             ChhhhhhhcccHhhhhhhHhhcCCCcch--hccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhh
Confidence            9999999999 89999999999999988  5578888888888887766655554                         


Q ss_pred             --------HCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904          269 --------SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF  340 (596)
Q Consensus       269 --------~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  340 (596)
                              .+|++++.++..|+||||+|+..|++++|++|+++|+|++.++..|+||||.|+..|+.+|+.+|+++|+.+
T Consensus       520 v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v  599 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV  599 (1143)
T ss_pred             HHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC
Confidence                    556677788899999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCc
Q psy904          341 PSD  343 (596)
Q Consensus       341 ~~~  343 (596)
                      ...
T Consensus       600 na~  602 (1143)
T KOG4177|consen  600 NAA  602 (1143)
T ss_pred             Ccc
Confidence            754

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-37  Score=335.34  Aligned_cols=285  Identities=19%  Similarity=0.264  Sum_probs=221.1

Q ss_pred             cHHHHHHh---cCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904           13 TALTLACA---GGHEELVELLLSRGADIEHRDKKGFTPLILAATA--GHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus        13 t~L~~A~~---~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~--g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      ++||.-+.   ..+.++|++|++.|+++|.. ..|.||||.++..  ++.++|++|+++|++++...  .+.||||.|+.
T Consensus         2 ~~l~~y~~~~~~~~~~~v~~LL~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~--~~~tpL~~a~~   78 (494)
T PHA02989          2 SSLYEYILYSDTVDKNALEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG--YIETPLCAVLR   78 (494)
T ss_pred             cHHHHHHHcCCcCcHHHHHHHHHcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC--CCCCcHHHHHh
Confidence            34554444   57899999999999999998 6788998776654  37899999999999998653  56899999987


Q ss_pred             CC------cHHHHHHHHhCCCCccCCCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCc-cccCCCCCCCcHHHHHHHc-
Q psy904           88 GG------RYEVVELLLTRGANKEHRNVSDYTPLSLAASG---GYVNIIKLLLTHGAEI-NSRTGSKLGISPLMLAAMN-  156 (596)
Q Consensus        88 ~g------~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~---g~~eiv~~Ll~~g~~~-~~~~~~~~g~t~L~~A~~~-  156 (596)
                      ++      +.+++++|+++|++++..+..|.||||.|+..   |+.+++++|+++|+++ +..+  ..|.||||+|+.. 
T Consensus        79 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d--~~g~tpLh~a~~~~  156 (494)
T PHA02989         79 NREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKN--SRGYNLLHMYLESF  156 (494)
T ss_pred             ccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccC--CCCCCHHHHHHHhc
Confidence            54      57899999999999999999999999988765   6789999999999988 5544  3488999988754 


Q ss_pred             -CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC----CHHHHHHHHhcCCCcccccCCCChHHHHHHhc------Cc
Q psy904          157 -GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG----RHEVVSLLLDRKANVEHRAKTGLTPLMEAASG------GY  225 (596)
Q Consensus       157 -g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~----~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~------g~  225 (596)
                       ++.+++++|+++|++++...+..|.||||.|+..+    +.+++++|++.|++++..+..+.||||.++..      +.
T Consensus       157 ~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~  236 (494)
T PHA02989        157 SVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKE  236 (494)
T ss_pred             cCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccc
Confidence             57899999999998887744667888888887654    78888888888888888888888888876543      24


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      ..++.+|+. |++++.  .+..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.++|++|++.+.
T Consensus       237 ~~il~~l~~-~advn~--~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        237 FKVLNFILK-YIKINK--KDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             hHHHHHHHh-CCCCCC--CCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            556665544 466665  44567777777777777777777777777777777777777777777777777777776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=334.18  Aligned_cols=287  Identities=22%  Similarity=0.319  Sum_probs=248.2

Q ss_pred             cHHHHHHH---cCCHHHHHHHHhCCCCccccccCCCChHHHHHHHC--CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHh
Q psy904           46 TPLILAAT---AGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG--GRYEVVELLLTRGANKEHRNVSDYTPLSLAAS  120 (596)
Q Consensus        46 t~L~~A~~---~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~--g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~  120 (596)
                      ++||..+.   ..+.++|++|+++|++++..  ..|.||||.++..  ++.++|++|+++|++++..+ .+.||||.|+.
T Consensus         2 ~~l~~y~~~~~~~~~~~v~~LL~~GadvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~   78 (494)
T PHA02989          2 SSLYEYILYSDTVDKNALEFLLRTGFDVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLR   78 (494)
T ss_pred             cHHHHHHHcCCcCcHHHHHHHHHcCCCcccc--cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHh
Confidence            35555554   36889999999999999876  4588988765543  47999999999999999876 56899999987


Q ss_pred             cC------CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc-
Q psy904          121 GG------YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN---GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ-  190 (596)
Q Consensus       121 ~g------~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-  190 (596)
                      ++      +.+++++|+++|++++..+..  |.||||.|+..   |+.+++++|+++|++++...+..|.||||+|+.. 
T Consensus        79 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~--g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~  156 (494)
T PHA02989         79 NREITSNKIKKIVKLLLKFGADINLKTFN--GVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESF  156 (494)
T ss_pred             ccCcchhhHHHHHHHHHHCCCCCCCCCCC--CCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhc
Confidence            54      578999999999999887654  99999988765   6899999999999999444478899999998764 


Q ss_pred             -CCHHHHHHHHhcCCCccc-ccCCCChHHHHHHhcC----cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc------
Q psy904          191 -GRHEVVSLLLDRKANVEH-RAKTGLTPLMEAASGG----YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK------  258 (596)
Q Consensus       191 -~~~~ii~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g----~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~------  258 (596)
                       ++.+++++|+++|++++. .+..|.||||.|+..+    +.+++++|++.|++++..  +..+.|+||.++..      
T Consensus       157 ~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~--~~~~~t~l~~~~~~~~~~~~  234 (494)
T PHA02989        157 SVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN--NNGSESVLESFLDNNKILSK  234 (494)
T ss_pred             cCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc--CCccccHHHHHHHhchhhcc
Confidence             689999999999999998 6789999999998754    899999999999999874  45788999987654      


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      +...++.+|+. |++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..|+.++|++|++.++
T Consensus       235 ~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        235 KEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             cchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            35678887765 69999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q psy904          339 QF  340 (596)
Q Consensus       339 ~~  340 (596)
                      ..
T Consensus       314 ~~  315 (494)
T PHA02989        314 GK  315 (494)
T ss_pred             Ch
Confidence            43

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=4.6e-37  Score=302.50  Aligned_cols=239  Identities=23%  Similarity=0.220  Sum_probs=203.9

Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD  167 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~  167 (596)
                      .++.+++++|+++|++  ..|..|.||||+|+..|+.+++++|+..|++++...    +.||||+|+..|+.+++++|+.
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d----~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC----CCCHHHHHHHCCCHHHHHHHHH
Confidence            4677888888887764  467778888888888888888888888887766542    5788999988889999999988


Q ss_pred             cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC-ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCC
Q psy904          168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG-LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS  246 (596)
Q Consensus       168 ~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~  246 (596)
                      .|++++.. +..|.||||+|+..|+.+++++|++.|++++..+..| .||||+|+..|+.+++++|++++++..   ...
T Consensus        83 ~Gadvn~~-d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~---d~~  158 (284)
T PHA02791         83 SGMDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLA  158 (284)
T ss_pred             CCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc---ccc
Confidence            88888765 6778899999999999999999999999998888777 489999999999999999999875431   112


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChH-HHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcC
Q psy904          247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP-LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG  325 (596)
Q Consensus       247 ~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g  325 (596)
                      .|.||||+|+..|+.+++++|+++|++++..|..|.|| ||+|+..|+.++|++|+++|++++..|..| ++|      +
T Consensus       159 ~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~  231 (284)
T PHA02791        159 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------D  231 (284)
T ss_pred             cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------C
Confidence            47899999999999999999999999999999999987 999999999999999999999999999854 655      8


Q ss_pred             CHHHHHHHHhCcCCCCCc
Q psy904          326 HVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       326 ~~~iv~~Ll~~~~~~~~~  343 (596)
                      +.+++++||++.+++..+
T Consensus       232 ~~e~~~~ll~~~~~~~~~  249 (284)
T PHA02791        232 DAEIAKMIIEKHVEYKSD  249 (284)
T ss_pred             CHHHHHHHHHhhhhhccc
Confidence            899999999998876554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.3e-36  Score=316.08  Aligned_cols=295  Identities=24%  Similarity=0.317  Sum_probs=213.9

Q ss_pred             ChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC
Q psy904           79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH  158 (596)
Q Consensus        79 ~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~  158 (596)
                      .++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++....+  +.||||.|+..|+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~--~~t~L~~A~~~g~   80 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPD--IESELHDAVEEGD   80 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC--cccHHHHHHHCCC
Confidence            46777777777777777777777777777777777777777777777777777777766554333  6678888888888


Q ss_pred             HHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCC
Q psy904          159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD  238 (596)
Q Consensus       159 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~  238 (596)
                      .+++++|++.|.......+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~  160 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC  160 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            88888888877766655556678888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC-hHHHHHHhcCcHHHHHHHHHCCCCcccC---CCCC
Q psy904          239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN-SPLWLAANGGHLSVVELLCKHGADIDSQ---DNRK  314 (596)
Q Consensus       239 ~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~gad~~~~---~~~g  314 (596)
                      ++.  .+..|.||||+|+..|+.+++++|+++|++++..+..|. ||||+|+..|+.+++++|+++|+|++..   +..+
T Consensus       161 ~~~--~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~  238 (413)
T PHA02875        161 LDI--EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEE  238 (413)
T ss_pred             CCC--CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCc
Confidence            776  557788888888888888888888888888888887764 7888888888888888888888888754   5667


Q ss_pred             CCHHHHHHHc---CCHHHHHHHHhCc-----CC-CCCchHHHHHHhhc-CcHHHHHhhhhhhHHHHHHhhHHH
Q psy904          315 VSCLMAAFRK---GHVKAVRWMVNHV-----AQ-FPSDQEMTRYIQTV-NDKELLDKCQECSMVIRVAKNQQA  377 (596)
Q Consensus       315 ~t~L~~A~~~---g~~~iv~~Ll~~~-----~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~  377 (596)
                      .||++++...   ...+++..|+.+.     .. +.....+..-+..+ ....+......|...|...+....
T Consensus       239 ~t~l~~~~~~~~~~~~~~~~~li~~i~~~~~~~~~~~~~~~~~n~~~i~~~~~l~~~~~~C~~ei~~mk~~~i  311 (413)
T PHA02875        239 CTILDMICNMCTNLESEAIDALIADIAIRIHKKTIRRDEGFKNNMSTIEDKEEFKDVFEKCIIELRRIKSEKI  311 (413)
T ss_pred             hHHHHHHHhhcCCcccHHHHHHHHHHHHHhCcccccchhcccccHHHhcChHHHHHHHHHHHHHHHHHHhhcc
Confidence            7888776533   3345555554321     11 11111111111122 223344455677777777766443

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.2e-36  Score=314.29  Aligned_cols=329  Identities=16%  Similarity=0.113  Sum_probs=254.0

Q ss_pred             cCCCCCcHHH-HHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHH-cCCHHHHHHHHhCCCCccc------------
Q psy904            7 TESNHDTALT-LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAAT-AGHDKVVDILLNHKADMEA------------   72 (596)
Q Consensus         7 ~d~~g~t~L~-~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~-~g~~eiv~~Ll~~~~~~~~------------   72 (596)
                      .+-+|.++|| .|+..|++++|++|+++|+++|..+..|.+|+|+|+. .|+.+++++|+++|+++..            
T Consensus        67 ~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~  146 (631)
T PHA02792         67 KNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQ  146 (631)
T ss_pred             CccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhh
Confidence            4556777887 4556889999999999999999999989999999966 6899999999999986321            


Q ss_pred             -----------------------cccCCCChHHHHHHHCC-------cHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q psy904           73 -----------------------QSERTKDTPLSLACSGG-------RYEVVELLLTRGANKEHRNVSDYTPLSLAASGG  122 (596)
Q Consensus        73 -----------------------~~~~~~~t~L~~A~~~g-------~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g  122 (596)
                                             ..+..|.||||+|+.++       +.++++.|+++|++++..|..|.||||+|+...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~  226 (631)
T PHA02792        147 ITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKC  226 (631)
T ss_pred             cccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcc
Confidence                                   12345789999999888       789999999999999989989999999999888


Q ss_pred             --CHHHHHHHHhCCCCccccCCCCCCCcHHHHHH--Hc----CCH--HHHHHHHhcCC--CcccccccCC----------
Q psy904          123 --YVNIIKLLLTHGAEINSRTGSKLGISPLMLAA--MN----GHT--AAVKLLLDMGS--DINAQIETNR----------  180 (596)
Q Consensus       123 --~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~--~~----g~~--eiv~~Ll~~~~--~~~~~~~~~~----------  180 (596)
                        ..+++++|+........      ....|+--.  +.    +++  .+|..|++.+.  ++........          
T Consensus       227 ~i~~ei~~~L~~~~~~~~~------~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~  300 (631)
T PHA02792        227 DIKREIFDALFDSNYSGNE------LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILK  300 (631)
T ss_pred             cchHHHHHHHHhccccccc------hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHH
Confidence              78899999875221111      112222211  11    223  37777777654  2111100000          


Q ss_pred             ------CcHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHH
Q psy904          181 ------NTALTLACFQG--RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTAL  252 (596)
Q Consensus       181 ------~t~L~~A~~~~--~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L  252 (596)
                            ...||.-..++  +.+++++|++.|++...  ..+..+++.|+..|+.+++++|+++|++++.......+.|||
T Consensus       301 ~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpL  378 (631)
T PHA02792        301 RYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPL  378 (631)
T ss_pred             HHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHH
Confidence                  12445555555  67899999999998752  235567899999999999999999999998865444567999


Q ss_pred             HHHHHcCcH---HHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH------
Q psy904          253 TIAADKGHC---RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR------  323 (596)
Q Consensus       253 ~~A~~~~~~---~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~------  323 (596)
                      |+|+.....   .++++|+++|+|+|.+|..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+.      
T Consensus       379 h~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~  458 (631)
T PHA02792        379 FPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACI  458 (631)
T ss_pred             HHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhccc
Confidence            998876654   46899999999999999999999999999999999999999999999999999999999976      


Q ss_pred             ----cCCHHHHHHHHhCcCCCCCc
Q psy904          324 ----KGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       324 ----~g~~~iv~~Ll~~~~~~~~~  343 (596)
                          .....++++|+++|+.+..-
T Consensus       459 ~~i~~~~~~il~lLLs~~p~i~~i  482 (631)
T PHA02792        459 PEIAELYIKILEIILSKLPTIECI  482 (631)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHH
Confidence                22356799999999876643

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=319.48  Aligned_cols=281  Identities=18%  Similarity=0.257  Sum_probs=238.5

Q ss_pred             cHHHHHHHHHCCCCccccCCCCCcHHHHHHHc--CCHHHHHHHHhCCCCccccccCCCChHHHHHHHC-----CcHHHHH
Q psy904           23 HEELVELLLSRGADIEHRDKKGFTPLILAATA--GHDKVVDILLNHKADMEAQSERTKDTPLSLACSG-----GRYEVVE   95 (596)
Q Consensus        23 ~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~--g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-----g~~eivk   95 (596)
                      .+++|+.|++.+. ++.. ..|.|+++.+...  ++.++|++|+++|++++.. +..|.||||.|+.+     ++.++++
T Consensus        17 ~~~~v~~ll~~~~-~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~TpL~~~~~n~~~~~~~~~iv~   93 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGL-DNEYSTPLCTILSNIKDYKHMLDIVK   93 (489)
T ss_pred             cHHHHHHHHhcCC-hhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCC-CCCCCChHHHHHHhHHhHHhHHHHHH
Confidence            4789999998653 4433 4567777655544  4889999999999998865 56799999998864     6789999


Q ss_pred             HHHhCCCCccCCCCCCCcHHHHHHhcC---CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC---HHHHHHHHhcC
Q psy904           96 LLLTRGANKEHRNVSDYTPLSLAASGG---YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH---TAAVKLLLDMG  169 (596)
Q Consensus        96 ~LL~~g~~~~~~d~~g~t~L~~A~~~g---~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~---~eiv~~Ll~~~  169 (596)
                      +|+++|++++..+..|.||||+|+.++   +.+++++|+++|++++..+..  |.||||+|+..|+   .+++++|++.|
T Consensus        94 ~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~--g~tpL~~a~~~~~~~~~~vv~~Ll~~g  171 (489)
T PHA02798         94 ILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKD--GFTMLQVYLQSNHHIDIEIIKLLLEKG  171 (489)
T ss_pred             HHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCC--CCcHHHHHHHcCCcchHHHHHHHHHhC
Confidence            999999999999999999999999876   789999999999998877654  9999999999988   99999999999


Q ss_pred             CCcccccccCCCcHHHHHHHc----CCHHHHHHHHhcCCCcccccCCCChHHH-------HHHhcCcHHHHHHHHhCCCC
Q psy904          170 SDINAQIETNRNTALTLACFQ----GRHEVVSLLLDRKANVEHRAKTGLTPLM-------EAASGGYVEVGRVLLDKGAD  238 (596)
Q Consensus       170 ~~~~~~~~~~~~t~L~~A~~~----~~~~ii~~Ll~~g~~~~~~~~~g~t~L~-------~A~~~g~~~iv~~Ll~~g~~  238 (596)
                      ++++...+..+.||||.++..    ++.+++++|+++|++++..+..|.++++       .+...+...++.+|+. +++
T Consensus       172 adin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d  250 (489)
T PHA02798        172 VDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID  250 (489)
T ss_pred             CCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC
Confidence            999887666788999998764    4789999999999999988888888876       2344567788888766 577


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCC
Q psy904          239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD  311 (596)
Q Consensus       239 ~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~  311 (596)
                      +|.  .+..|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.++++.|+++|++++...
T Consensus       251 vN~--~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~i~  321 (489)
T PHA02798        251 INQ--VDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKNTIS  321 (489)
T ss_pred             CCC--cCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHHHHH
Confidence            776  56789999999999999999999999999999999999999999999999999999999999887543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3e-35  Score=289.65  Aligned_cols=236  Identities=19%  Similarity=0.194  Sum_probs=173.2

Q ss_pred             cCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhC
Q psy904           21 GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR  100 (596)
Q Consensus        21 ~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~  100 (596)
                      .++.+++++|++.|++  ..|..|.||||+|+..|+.+++++|+++|++++..   .+.||||+|+..|+.++|++|+.+
T Consensus         9 ~~~~~~~~~Lis~~a~--~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~   83 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF--KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFS   83 (284)
T ss_pred             cCHHHHHHHHHhCCCC--CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHC
Confidence            5678899999998874  57888999999999999999999999998877653   367899999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCcccccccC
Q psy904          101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG-ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETN  179 (596)
Q Consensus       101 g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g-~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~  179 (596)
                      |++++..|..|.||||+|+..|+.+++++|+.+|++++.....  | .||||+|+..|+.+++++|+.++++..   +  
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~--g~~TpL~~Aa~~g~~eivk~LL~~~~~~~---d--  156 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT--GWKTSFYHAVMLNDVSIVSYFLSEIPSTF---D--  156 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCC--CCcHHHHHHHHcCCHHHHHHHHhcCCccc---c--
Confidence            9888888888888888888888888888888888777654332  4 367777777777777777766543211   0  


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcH-HHHHHHc
Q psy904          180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA-LTIAADK  258 (596)
Q Consensus       180 ~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~-L~~A~~~  258 (596)
                                                    ...|.||||+|+..|+.+++++|+++|++++.  .+..|.|| ||+|+..
T Consensus       157 ------------------------------~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~--~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        157 ------------------------------LAILLSCIHITIKNGHVDMMILLLDYMTSTNT--NNSLLFIPDIKLAIDN  204 (284)
T ss_pred             ------------------------------cccCccHHHHHHHcCCHHHHHHHHHCCCCCCc--ccCCCCChHHHHHHHc
Confidence                                          01245666666666666666666666666665  33455554 7777777


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904          259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI  307 (596)
Q Consensus       259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  307 (596)
                      |+.++|++|+++|++++.+|..| |||      |+.+++++||++-++.
T Consensus       205 ~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        205 KDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             CCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            77777777777777777777643 555      6777777777765554

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.7e-35  Score=314.35  Aligned_cols=277  Identities=18%  Similarity=0.276  Sum_probs=241.2

Q ss_pred             CHHHHHHHHhCCCCccccccCCCChHHHHHHH--CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhc-----CCHHHHH
Q psy904           56 HDKVVDILLNHKADMEAQSERTKDTPLSLACS--GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG-----GYVNIIK  128 (596)
Q Consensus        56 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~--~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~-----g~~eiv~  128 (596)
                      .+++|+.|+..+. ++..  ..+.|+++.+..  .++.++|++|+++|++++..+..|.||||.|+.+     +..++++
T Consensus        17 ~~~~v~~ll~~~~-~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~   93 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEI--VNEYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVK   93 (489)
T ss_pred             cHHHHHHHHhcCC-hhhh--cccchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHH
Confidence            5689999998753 3322  346677764443  4589999999999999999999999999999865     6789999


Q ss_pred             HHHhCCCCccccCCCCCCCcHHHHHHHcC---CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC---HHHHHHHHhc
Q psy904          129 LLLTHGAEINSRTGSKLGISPLMLAAMNG---HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR---HEVVSLLLDR  202 (596)
Q Consensus       129 ~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g---~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~---~~ii~~Ll~~  202 (596)
                      +|+++|++++..+..  |.||||+|+.++   +.+++++|+++|++++.. +..|.||||+|+..++   .+++++|++.
T Consensus        94 ~Ll~~GadiN~~d~~--G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~-d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~  170 (489)
T PHA02798         94 ILIENGADINKKNSD--GETPLYCLLSNGYINNLEILLFMIENGADTTLL-DKDGFTMLQVYLQSNHHIDIEIIKLLLEK  170 (489)
T ss_pred             HHHHCCCCCCCCCCC--cCcHHHHHHHcCCcChHHHHHHHHHcCCCcccc-CCCCCcHHHHHHHcCCcchHHHHHHHHHh
Confidence            999999999887654  999999999986   789999999999999886 7889999999999988   9999999999


Q ss_pred             CCCccccc-CCCChHHHHHHhc----CcHHHHHHHHhCCCCCCCCCCCCCCCcHHH-------HHHHcCcHHHHHHHHHC
Q psy904          203 KANVEHRA-KTGLTPLMEAASG----GYVEVGRVLLDKGADVNAPPVPSSRDTALT-------IAADKGHCRFVELLLSK  270 (596)
Q Consensus       203 g~~~~~~~-~~g~t~L~~A~~~----g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~-------~A~~~~~~~iv~~Ll~~  270 (596)
                      |++++..+ ..|.||||.++..    ++.+++++|+++|++++.  .+..|.++++       .+...++..++.+|+. 
T Consensus       171 gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~--~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-  247 (489)
T PHA02798        171 GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK--ENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-  247 (489)
T ss_pred             CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc--CCccccchHHHHHHHHHhhcccchHHHHHHHHh-
Confidence            99999875 5789999998764    479999999999999887  4456777766       2344567888988876 


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904          271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       271 g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  341 (596)
                      |+|+|.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.|||++|+..++..+++.|+++++++.
T Consensus       248 ~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        248 YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999998765

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=304.14  Aligned_cols=242  Identities=26%  Similarity=0.348  Sum_probs=170.4

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCc
Q psy904           11 HDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR   90 (596)
Q Consensus        11 g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~   90 (596)
                      +.++||.|+..|++++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. +..+.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~~~t~L~~A~~~g~   80 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK-YPDIESELHDAVEEGD   80 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc-CCCcccHHHHHHHCCC
Confidence            578999999999999999999999999999889999999999999999999999999876543 3467789999999999


Q ss_pred             HHHHHHHHhCCCCcc-CCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy904           91 YEVVELLLTRGANKE-HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG  169 (596)
Q Consensus        91 ~eivk~LL~~g~~~~-~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~  169 (596)
                      .++|++|++.|..+. ..+..|.||||+|+..|+.+++++|+++|++++.....  |.||||+|+..|+.+++++|+++|
T Consensus        81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~--g~tpLh~A~~~~~~~~v~~Ll~~g  158 (413)
T PHA02875         81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD--KFSPLHLAVMMGDIKGIELLIDHK  158 (413)
T ss_pred             HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999988887653 33456777777777777777777777777766654432  666666666666666666666666


Q ss_pred             CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC-ChHHHHHHhcCcHHHHHHHHhCCCCCCCCC-CCCC
Q psy904          170 SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG-LTPLMEAASGGYVEVGRVLLDKGADVNAPP-VPSS  247 (596)
Q Consensus       170 ~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~~~~  247 (596)
                      ++++.. +..|.||||+|+..|+.+++++|++.|++++..+..| .||+|+|+..|+.+++++|+++|++++... .+..
T Consensus       159 ~~~~~~-d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~  237 (413)
T PHA02875        159 ACLDIE-DCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGE  237 (413)
T ss_pred             CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCC
Confidence            655544 4455566666666666666666666666665555444 355555666666666666666665555421 2334


Q ss_pred             CCcHHHHHH
Q psy904          248 RDTALTIAA  256 (596)
Q Consensus       248 g~t~L~~A~  256 (596)
                      +.|||+.++
T Consensus       238 ~~t~l~~~~  246 (413)
T PHA02875        238 ECTILDMIC  246 (413)
T ss_pred             chHHHHHHH
Confidence            455555544

>KOG0508|consensus

Probab=100.00  E-value=3.1e-34  Score=280.67  Aligned_cols=190  Identities=36%  Similarity=0.507  Sum_probs=169.2

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHH-CCCCcc--------ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCC
Q psy904            7 TESNHDTALTLACAGGHEELVELLLS-RGADIE--------HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT   77 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~-~g~~i~--------~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~   77 (596)
                      ...+|-|||..||.+|+.++|+||++ .++++.        -....|-+||-.|+..||+++|+.|+.+|++++.. ...
T Consensus        38 ~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~t-T~T  116 (615)
T KOG0508|consen   38 EVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDT-TRT  116 (615)
T ss_pred             cccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccc-ccc
Confidence            35678899999999999999999999 477653        33466888999999999999999999999887764 345


Q ss_pred             CChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC
Q psy904           78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG  157 (596)
Q Consensus        78 ~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g  157 (596)
                      ..|||-.||..|++++|+||+++|++++..|..|.|.|++|+..|+.+|+++|++.|++++.....  |.|+||.++..|
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~k--GNTALH~caEsG  194 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYK--GNTALHDCAESG  194 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhccc--CchHHHhhhhcc
Confidence            669999999999999999999999999999999999999999999999999999999999887644  999999999999


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHh
Q psy904          158 HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD  201 (596)
Q Consensus       158 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~  201 (596)
                      +++++++|+.+|+.+..  +..|.|||..|...|..+++.+|+.
T Consensus       195 ~vdivq~Ll~~ga~i~~--d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  195 SVDIVQLLLKHGAKIDV--DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cHHHHHHHHhCCceeee--cCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999997764  4568999999999999999999996

>KOG0508|consensus

Probab=100.00  E-value=3.5e-33  Score=273.30  Aligned_cols=215  Identities=35%  Similarity=0.504  Sum_probs=189.1

Q ss_pred             HHHHhcCcHHHHHHHHHCCCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CCCccc-------cccCCCChHH
Q psy904           16 TLACAGGHEELVELLLSRGAD-----IEHRDKKGFTPLILAATAGHDKVVDILLNH-KADMEA-------QSERTKDTPL   82 (596)
Q Consensus        16 ~~A~~~g~~~ivk~Ll~~g~~-----i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~-~~~~~~-------~~~~~~~t~L   82 (596)
                      ..|+..|.+..+..|+.+..+     +-....+|-|||.+|+++|+.++|+||+++ ++++..       -....|.+||
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence            378899999988888876432     223446788999999999999999999994 333221       1124577899


Q ss_pred             HHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHH
Q psy904           83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV  162 (596)
Q Consensus        83 ~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv  162 (596)
                      -.|+-.||+++|+.|+.+|+++|.......|||-.||.-|++++++||+++|+++.+....  |.|+||+||..|+.+|+
T Consensus        89 WaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianrh--GhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRH--GHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccC--CCeeEEeeeccCchHHH
Confidence            9999999999999999999999999999999999999999999999999999999887754  99999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHh
Q psy904          163 KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD  234 (596)
Q Consensus       163 ~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  234 (596)
                      ++|++.|++++.. ...|+|+||.|+..|+++++++|+.+|+.+.. |..|.|||..|+..|+.++|.+|+.
T Consensus       167 qyLle~gADvn~k-s~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  167 QYLLEQGADVNAK-SYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHhCCCcchh-cccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhc
Confidence            9999999999987 78899999999999999999999999998875 5669999999999999999999994

>KOG4412|consensus

Probab=100.00  E-value=1.9e-33  Score=242.34  Aligned_cols=206  Identities=31%  Similarity=0.387  Sum_probs=169.6

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCC-CccccCCCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCcHHHHHHH
Q psy904          112 YTPLSLAASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAMNGHTAAVKLLLD-MGSDINAQIETNRNTALTLACF  189 (596)
Q Consensus       112 ~t~L~~A~~~g~~eiv~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~-~~~~~~~~~~~~~~t~L~~A~~  189 (596)
                      .++.+.++......-++-+++..+ .++.... ..|+||||+||..|+.+++.+|+. -+..++.. +..|+||||+|+.
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~d-qD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddk-DdaGWtPlhia~s   81 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDD-QDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDK-DDAGWTPLHIAAS   81 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhcccc-ccCCceeeeeeecCchhHHHHHHhcCCCCCCCc-cccCCchhhhhhh
Confidence            345555555555555555665544 3333332 237888888888888888888884 45555655 7788899999999


Q ss_pred             cCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q psy904          190 QGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL  268 (596)
Q Consensus       190 ~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll  268 (596)
                      .|+.++|+.|+.. |+++|..+..|.|+||+|+..|.++|+++|+++|+.+++  .+..|.||||-|+..|.+.+++||+
T Consensus        82 ~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~--kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRI--KDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             cCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcc--cccccCchhHHHHhccchhhHHHHH
Confidence            9999999999988 999999999999999999999999999999999988887  6688999999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904          269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF  322 (596)
Q Consensus       269 ~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~  322 (596)
                      ..|+.+|..|..|+||||+|..-|+.++..+|+++||+++..|+.| ||+..|.
T Consensus       160 ~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  160 SQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIAC  212 (226)
T ss_pred             hcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHH
Confidence            9999999999999999999988889999999999999999999988 9987764

>PHA02792 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=282.51  Aligned_cols=328  Identities=16%  Similarity=0.149  Sum_probs=227.5

Q ss_pred             CCccCCCCCcHHHHHHhcCc-HHHHHHHHHCCCCccccCCCCCcHHHHH-HHcCCHHHHHHHHhCCCCccccccCCCChH
Q psy904            4 DSETESNHDTALTLACAGGH-EELVELLLSRGADIEHRDKKGFTPLILA-ATAGHDKVVDILLNHKADMEAQSERTKDTP   81 (596)
Q Consensus         4 ~~~~d~~g~t~L~~A~~~g~-~~ivk~Ll~~g~~i~~~d~~g~t~L~~A-~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~   81 (596)
                      +.....+|.||||.-....+ ..-++.++..|.+++..+.+|.+++|+- ..+|+.++|++|+.+|++++...+ .+.+|
T Consensus        30 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n-~~~~~  108 (631)
T PHA02792         30 NPLYEYDGETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKN-GINIV  108 (631)
T ss_pred             CcccccCCCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccC-CCCcc
Confidence            33445677788887765554 3345566666777788888888888764 456788999999999988887654 47788


Q ss_pred             HHHHHH-CCcHHHHHHHHhCCCCccC------------------------------------CCCCCCcHHHHHHhcC--
Q psy904           82 LSLACS-GGRYEVVELLLTRGANKEH------------------------------------RNVSDYTPLSLAASGG--  122 (596)
Q Consensus        82 L~~A~~-~g~~eivk~LL~~g~~~~~------------------------------------~d~~g~t~L~~A~~~g--  122 (596)
                      +++|+. .++.+++++||+.|+++..                                    .|..|.||||+|+.++  
T Consensus       109 l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~  188 (631)
T PHA02792        109 EKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQ  188 (631)
T ss_pred             eeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCc
Confidence            888865 6889999999988876432                                    2234566666666666  


Q ss_pred             -----CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccccCCCcHHHHHH--Hc---
Q psy904          123 -----YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG--HTAAVKLLLDMGSDINAQIETNRNTALTLAC--FQ---  190 (596)
Q Consensus       123 -----~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~--~~---  190 (596)
                           +.++++.|+++|++++..+..  |.||||+|+...  +.+++++|+....+..   ..  ...|..-.  ..   
T Consensus       189 ~~~~~~~~v~k~Li~~g~~~~~~d~~--g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~---~~--~~~l~~y~~~~~~~~  261 (631)
T PHA02792        189 DGYATSLDVINYLISHEKEMRYYTYR--EHTTLYYYVDKCDIKREIFDALFDSNYSGN---EL--MNILSNYLRKQYRNK  261 (631)
T ss_pred             ccccCCHHHHHHHHhCCCCcCccCCC--CChHHHHHHHcccchHHHHHHHHhcccccc---ch--HhHHHHHHHHHhccC
Confidence                 566666666666666555433  666666666666  5666666665311110   00  11111111  11   


Q ss_pred             -C--CHHHHHHHHhcCCCccc------ccC-------------CCChHHHHHHhcC--cHHHHHHHHhCCCCCCCCCCCC
Q psy904          191 -G--RHEVVSLLLDRKANVEH------RAK-------------TGLTPLMEAASGG--YVEVGRVLLDKGADVNAPPVPS  246 (596)
Q Consensus       191 -~--~~~ii~~Ll~~g~~~~~------~~~-------------~g~t~L~~A~~~g--~~~iv~~Ll~~g~~~~~~~~~~  246 (596)
                       .  +..+|..|++.+.....      .+.             .-+-.||.-...+  +.+++++|+++|++++-    .
T Consensus       262 ~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r----~  337 (631)
T PHA02792        262 NHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR----F  337 (631)
T ss_pred             ccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc----C
Confidence             1  12356666654331100      000             0112345455555  67899999999998752    2


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC--ChHHHHHHhcCcH---HHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy904          247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKG--NSPLWLAANGGHL---SVVELLCKHGADIDSQDNRKVSCLMAA  321 (596)
Q Consensus       247 ~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g--~TpL~~A~~~g~~---~iv~~Ll~~gad~~~~~~~g~t~L~~A  321 (596)
                      ....+++.|+..|+.++|++|+++|+|++..|..|  .||||+|+..+..   .++++|+.+|+|++.+|..|.||||+|
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~A  417 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYC  417 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHH
Confidence            35567999999999999999999999999999875  6999998876654   468899999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCcCCCCCc
Q psy904          322 FRKGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       322 ~~~g~~~iv~~Ll~~~~~~~~~  343 (596)
                      +..++.+++++|+++|+++...
T Consensus       418 a~~~n~eivelLLs~GADIN~k  439 (631)
T PHA02792        418 IESHSVSLVEWLIDNGADINIT  439 (631)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCc
Confidence            9999999999999999987644

>KOG4412|consensus

Probab=99.98  E-value=7e-32  Score=232.62  Aligned_cols=106  Identities=34%  Similarity=0.449  Sum_probs=52.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcC
Q psy904          180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG  259 (596)
Q Consensus       180 ~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~  259 (596)
                      |.||||+|+..|.++|.++|+++|+.++..|..|.||||.|+.-|.+.++.+|+..|+.+|.  .+..|.||||.|...|
T Consensus       106 G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~--qDk~G~TpL~~al~e~  183 (226)
T KOG4412|consen  106 GQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT--QDKYGFTPLHHALAEG  183 (226)
T ss_pred             CcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc--ccccCccHHHHHHhcc
Confidence            33444444444444444444444444444455555555555555555555555555544444  3344555555554444


Q ss_pred             cHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy904          260 HCRFVELLLSKGAQVEVKNKKGNSPLWLA  288 (596)
Q Consensus       260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A  288 (596)
                      +.++..+|+.+|++++..|+.| ||+-.|
T Consensus       184 ~~d~a~lLV~~gAd~~~edke~-t~~~~a  211 (226)
T KOG4412|consen  184 HPDVAVLLVRAGADTDREDKEG-TALRIA  211 (226)
T ss_pred             CchHHHHHHHhccceeeccccC-chHHHH
Confidence            5555555555555555555544 554444

>KOG4369|consensus

Probab=99.97  E-value=9.3e-33  Score=291.61  Aligned_cols=374  Identities=32%  Similarity=0.415  Sum_probs=314.4

Q ss_pred             ccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcH
Q psy904           70 MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP  149 (596)
Q Consensus        70 ~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~  149 (596)
                      ++.....+..|+|..||.+||.++|++|+..|+++.++|..|++||.+|+..||..+|+.|+.+.+++..-. +..+.|+
T Consensus       749 id~~Te~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQs-drtkdt~  827 (2131)
T KOG4369|consen  749 IDPLTEPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQS-DRTKDTM  827 (2131)
T ss_pred             eccccCccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhc-ccccCce
Confidence            334445567799999999999999999999999999999999999999999999999999999988887544 3447899


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc--CCCChHHHHHHhcCcHH
Q psy904          150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRA--KTGLTPLMEAASGGYVE  227 (596)
Q Consensus       150 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~  227 (596)
                      |.+||..|..+++.+||..|++-... +....|||.+|...|+..+|..|+..|..++.+.  ..|-+||++|..+|+..
T Consensus       828 lSlacsggr~~vvelLl~~gankehr-nvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~  906 (2131)
T KOG4369|consen  828 LSLACSGGRTRVVELLLNAGANKEHR-NVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQA  906 (2131)
T ss_pred             EEEecCCCcchHHHHHHHhhcccccc-chhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccH
Confidence            99999999999999999999986665 4555699999999999999999999999998875  56889999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904          228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI  307 (596)
Q Consensus       228 iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  307 (596)
                      .+..|++.|.|+|.. +..+.+|+|.+|+..|+.++|.+||.+.+++.++-+.|.|||+-++..|.+++-.+||..|+|+
T Consensus       907 at~~ll~~gsdiNaq-IeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  907 ATLSLLQPGSDINAQ-IETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HHHHHhcccchhccc-cccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            999999999999986 6788999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCC--CCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCchHHHHHHhhcCcHHHHHhhhhhhHHHHHHhhHHHHHhhhhHH
Q psy904          308 DSQD--NRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNAN  385 (596)
Q Consensus       308 ~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  385 (596)
                      |...  ....|+|.+++..||..+|..|++..+....+..-                 .|..++.++.....    ....
T Consensus       986 nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~Nkk-----------------G~T~Lwla~~Gg~l----ss~~ 1044 (2131)
T KOG4369|consen  986 NASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKK-----------------GCTVLWLASAGGAL----SSCP 1044 (2131)
T ss_pred             ccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCC-----------------CCcccchhccCCcc----ccch
Confidence            8543  45669999999999999999999865543332210                 12222211111100    1111


Q ss_pred             HHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy904          386 ILLE---ELDMEKWREESKRAAQARKRERKKQKKLE-------------------KKEEKRKAMEEEEEVIRVAKNQQAE  443 (596)
Q Consensus       386 ~l~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~e~~~k~~e~~e~~~~~~~~~~~  443 (596)
                      +|.+   ..++...+...+.+.++||.+.+..+++.                   ...+...+|..|...++..++.|+.
T Consensus      1045 il~~~~ad~d~qdnr~~S~~maafRKgh~~iVk~mv~~atqfps~q~~ir~~~Tvss~~i~~kc~~c~~i~rSakqAQa~ 1124 (2131)
T KOG4369|consen 1045 ILVSSVADADQQDNRTNSRTMAAFRKGHFAIVKKMVPPATQFPSVQSTIRSLPTVSSAPITSKCAPCTFIPRSAKQAQAS 1124 (2131)
T ss_pred             HHhhcccChhhhhcccccccHHHHHhchhheeccccCchhcCCcHHHHHHhcccccccchhccccchhhhhhhhHHHHHH
Confidence            1111   45666788888999999999988877653                   1345677999999999999999999


Q ss_pred             HHHHhHhHHHHHHHHHHHHHHHHH
Q psy904          444 RANKNANILLEELDMEKWREESKR  467 (596)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~e~~~  467 (596)
                      .++.++.++++..++|+-++|.++
T Consensus      1125 sa~~~a~~lle~~dee~s~qe~~~ 1148 (2131)
T KOG4369|consen 1125 SAKMEAFSLLEPTDEEVSTQEQPM 1148 (2131)
T ss_pred             Hhhhhhhhcccchhhhhhhhhhhh
Confidence            999999999999999998888876

>KOG0509|consensus

Probab=99.97  E-value=2.4e-30  Score=264.69  Aligned_cols=210  Identities=32%  Similarity=0.445  Sum_probs=200.6

Q ss_pred             CcHHHHHHhcCcHHHHHHHHHC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCc
Q psy904           12 DTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR   90 (596)
Q Consensus        12 ~t~L~~A~~~g~~~ivk~Ll~~-g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~   90 (596)
                      ...+..|+.+|.++.|+.|++. |.+++..|.+|.|+||+|+.+++++++++|+++|++++......+.||||+|+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            4567899999999999999999 999999999999999999999999999999999999999887889999999999999


Q ss_pred             HHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy904           91 YEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS  170 (596)
Q Consensus        91 ~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~  170 (596)
                      +.+|.+|+++|++++.+|..|.+|||.|+..|++-+|-|||..|++++.++.+  |+||||+|+..|+...+..|+..|+
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~--grTpLmwAaykg~~~~v~~LL~f~a  202 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNN--GRTPLMWAAYKGFALFVRRLLKFGA  202 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCC--CCCHHHHHHHhcccHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999988888765  9999999999999988999999999


Q ss_pred             CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhc
Q psy904          171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG  223 (596)
Q Consensus       171 ~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~  223 (596)
                      .+....+..|+||||+|+..|+..++..|++.|++.+..+.+|.||+.+|...
T Consensus       203 ~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  203 SLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99998889999999999999999999988888899999999999999999766

>KOG0509|consensus

Probab=99.97  E-value=7.7e-30  Score=261.01  Aligned_cols=208  Identities=33%  Similarity=0.454  Sum_probs=110.3

Q ss_pred             hHHHHHHHCCcHHHHHHHHhC-CCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC
Q psy904           80 TPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH  158 (596)
Q Consensus        80 t~L~~A~~~g~~eivk~LL~~-g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~  158 (596)
                      +.++.|+..|.++.|+.|++. |.+++..|..|.|+||.|+.+++++++++|+++|+++|.... ..+.||||+|+++|+
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG-~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGG-VLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCC-CCCCCcchHHHHcCc
Confidence            455666666666666666666 666666666666666666666666666666666666555543 234455555555555


Q ss_pred             HHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCC
Q psy904          159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD  238 (596)
Q Consensus       159 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~  238 (596)
                      +.++.+|+++|++++.. |..|.+|||+|+..++.-++-+|+.+|++++.+|..|.||||+|+..|+...+..|+.-|+.
T Consensus       125 ~~vv~lLlqhGAdpt~~-D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLK-DKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             HHHHHHHHHcCCCCcee-cCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            55555555555555443 44445555555555555555555555555555555555555555555444444444444444


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHh
Q psy904          239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN  290 (596)
Q Consensus       239 ~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~  290 (596)
                      ++.. .+..|+||||+|+..|+..++.+|++.|++.+..|.+|.||+.+|..
T Consensus       204 ~~~~-d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  204 LLLT-DDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             cccc-ccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHH
Confidence            4432 12444455555555555444444444444444444444555444443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=2e-27  Score=242.53  Aligned_cols=231  Identities=18%  Similarity=0.151  Sum_probs=158.1

Q ss_pred             HHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCcccc----CCCCCCCcHHHHHHH--cCCHHHHHHHHhc
Q psy904           95 ELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSR----TGSKLGISPLMLAAM--NGHTAAVKLLLDM  168 (596)
Q Consensus        95 k~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~----~~~~~g~t~L~~A~~--~g~~eiv~~Ll~~  168 (596)
                      +||+.+|++++....++     +|+..+..+++++|+++|++++..    .....+.|+||.++.  +|+.+++++|+.+
T Consensus        66 ~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~  140 (437)
T PHA02795         66 DYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH  140 (437)
T ss_pred             HHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC
Confidence            55666666555555444     555666666666666666665410    122235566666666  5666666666666


Q ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc------cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCC
Q psy904          169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR------AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAP  242 (596)
Q Consensus       169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~------~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~  242 (596)
                      |++++..   .+.||||.|+..++.+++++|+++|++....      +..+.+++|.|...++.+++++|+++|+++|. 
T Consensus       141 GADIn~~---~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~-  216 (437)
T PHA02795        141 GAVIYKI---ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ-  216 (437)
T ss_pred             CCCCCCC---CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc-
Confidence            6666542   2346666666666666666666666532211      13466888888888899999999999988887 


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCc--------HHHHHHHHHCCCCcccCCCCC
Q psy904          243 PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH--------LSVVELLCKHGADIDSQDNRK  314 (596)
Q Consensus       243 ~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~--------~~iv~~Ll~~gad~~~~~~~g  314 (596)
                       .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+        .+++++|+++|++++....  
T Consensus       217 -kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~--  293 (437)
T PHA02795        217 -LDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL--  293 (437)
T ss_pred             -CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH--
Confidence             56788899999999999999999999999999999999999999998874        6899999999988876443  


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904          315 VSCLMAAFRKGHVKAVRWMVNHVAQF  340 (596)
Q Consensus       315 ~t~L~~A~~~g~~~iv~~Ll~~~~~~  340 (596)
                       |++..  ...+.++++.|+.++..+
T Consensus       294 -~~~~~--~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        294 -AILNN--TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             -Hhhhc--ccchHHHHHHHHHHHHhc
Confidence             22221  112678888888776544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.3e-27  Score=240.95  Aligned_cols=208  Identities=14%  Similarity=0.141  Sum_probs=184.9

Q ss_pred             HHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc------cccccCCCcHHHHHHH--cCCHHHHH
Q psy904          126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDIN------AQIETNRNTALTLACF--QGRHEVVS  197 (596)
Q Consensus       126 iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~------~~~~~~~~t~L~~A~~--~~~~~ii~  197 (596)
                      +.++++.+|++++....+  +     +|+..+..+++++|+.+|++++      . .+..+.|+||.++.  +|+.++++
T Consensus        64 ~~~~~~~~~~~i~~~~~~--~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~-~~~~~~~~L~~~~~n~~n~~eiV~  135 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVD--R-----LFAYITYKDIISALVSKNYMEDIFSIIIK-NCNSVQDLLLYYLSNAYVEIDIVD  135 (437)
T ss_pred             HHHHHHHcCcchhhhhhh--h-----HHhhcchHHHHHHHHhcccccchhhhhhh-ccccccHHHHHHHHhcCCCHHHHH
Confidence            468899999999877654  2     8889999999999999999977      3 35567899999999  89999999


Q ss_pred             HHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCC-CC---CCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy904          198 LLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAP-PV---PSSRDTALTIAADKGHCRFVELLLSKGAQ  273 (596)
Q Consensus       198 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~---~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d  273 (596)
                      +|+++|++++..  .+.||||.|+..|+.+++++|+++|++.+.. ..   ...+.+++|.|+..++.+++++|+++|++
T Consensus       136 ~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD  213 (437)
T PHA02795        136 FMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED  213 (437)
T ss_pred             HHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC
Confidence            999999999874  4589999999999999999999999854321 11   13477999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcC--------CHHHHHHHHhCcCCCCCc
Q psy904          274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG--------HVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       274 i~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g--------~~~iv~~Ll~~~~~~~~~  343 (596)
                      +|.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|        +.+++++|+.+|+++..-
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            9999999999999999999999999999999999999999999999999998        469999999999987764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=220.33  Aligned_cols=174  Identities=16%  Similarity=0.212  Sum_probs=150.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC--CHHHHHHHHhcCCCccccc-CCCChHHHHHHh
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG--RHEVVSLLLDRKANVEHRA-KTGLTPLMEAAS  222 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~--~~~ii~~Ll~~g~~~~~~~-~~g~t~L~~A~~  222 (596)
                      +.+||+.|+..|+.++|+.|+....   . .+..|.||||+|+..+  +.+++++|++.|++++..+ ..|.||||+|+.
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~~n---~-~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKFVN---D-CNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHhhh---c-cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            5688999999999999988887532   2 2566889999998754  8899999999999999886 479999999875


Q ss_pred             c---CcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHH--cCcHHHHHHHHHCCCCCCCCCCCCChHHHH-HHhcCcHHH
Q psy904          223 G---GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD--KGHCRFVELLLSKGAQVEVKNKKGNSPLWL-AANGGHLSV  296 (596)
Q Consensus       223 ~---g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~--~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~-A~~~g~~~i  296 (596)
                      .   ++.+++++|+++|++++.  .+..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.++
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~--~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~i  174 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITE--EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKI  174 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHH
Confidence            3   478999999999999987  66789999999876  468999999999999999999999999995 567889999


Q ss_pred             HHHHHHCCCCcccCCCCCCCHHHHHHHcC
Q psy904          297 VELLCKHGADIDSQDNRKVSCLMAAFRKG  325 (596)
Q Consensus       297 v~~Ll~~gad~~~~~~~g~t~L~~A~~~g  325 (596)
                      +++|+++|++++.+|..|.|||++|+..+
T Consensus       175 v~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        175 FDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            99999999999999999999999998664

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=1.1e-25  Score=214.02  Aligned_cols=176  Identities=17%  Similarity=0.186  Sum_probs=138.0

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccccCCCcHHHHH
Q psy904          110 SDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG--HTAAVKLLLDMGSDINAQIETNRNTALTLA  187 (596)
Q Consensus       110 ~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g--~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A  187 (596)
                      .+.|||+.|+..|++++|+.|+..+.   .  .+..|.||||+|+.++  +.+++++|+++|++++......|.||||+|
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~~n---~--~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKFVN---D--CNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHhhh---c--cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            34566666666666666666665421   1  1233667777777643  677788888877777766445677888887


Q ss_pred             HHc---CCHHHHHHHHhcCCCcccccCCCChHHHHHHh--cCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHH-HHHcCcH
Q psy904          188 CFQ---GRHEVVSLLLDRKANVEHRAKTGLTPLMEAAS--GGYVEVGRVLLDKGADVNAPPVPSSRDTALTI-AADKGHC  261 (596)
Q Consensus       188 ~~~---~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~--~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~-A~~~~~~  261 (596)
                      +..   ++.+++++|+++|++++..+..|.||||.|+.  .++.+++++|++.|++++.  .+..|.||||. |+..++.
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~--~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN--KDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc--ccCCCCcHHHHHHHhcCCH
Confidence            653   47899999999999999999999999999876  4689999999999999887  56889999996 5667899


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHhcC
Q psy904          262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGG  292 (596)
Q Consensus       262 ~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g  292 (596)
                      +++++|+++|++++.+|..|.||||+|+..+
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999999999999998754

>KOG0502|consensus

Probab=99.92  E-value=2.5e-25  Score=197.82  Aligned_cols=235  Identities=28%  Similarity=0.360  Sum_probs=126.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q psy904           43 KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG  122 (596)
Q Consensus        43 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g  122 (596)
                      .|.+.+-.+...|+.+++..++...++-...++..|+.+++.++..|+...+..+|.+|...+..+..+.+|+.+++...
T Consensus        61 lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql  140 (296)
T KOG0502|consen   61 LGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQL  140 (296)
T ss_pred             cCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHH
Confidence            34444555555666666555555555555445555666666666666666666666666665555555555555555555


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904          123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR  202 (596)
Q Consensus       123 ~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~  202 (596)
                      +++.+..+.++-.  |  ..+.+|+|||.||+..|++.+|++|++.|++                               
T Consensus       141 ~L~~~~~~~~n~V--N--~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-------------------------------  185 (296)
T KOG0502|consen  141 HLDVVDLLVNNKV--N--ACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-------------------------------  185 (296)
T ss_pred             HHHHHHHHhhccc--c--CccccCchHhHHHHhcCchHHHHHHHHcCCC-------------------------------
Confidence            5555544443321  1  1223355555555555555555555555554                               


Q ss_pred             CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Q psy904          203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN  282 (596)
Q Consensus       203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~  282 (596)
                         +........++|++|++.|+.++|++|+..+.|+|.  .+-+|.|||.+|+..++.++++.|+..|+|++..+..|+
T Consensus       186 ---p~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNv--yDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy  260 (296)
T KOG0502|consen  186 ---PDALGKYRESALSLATRGGYTDIVELLLTREVDVNV--YDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGY  260 (296)
T ss_pred             ---hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcce--eccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCC
Confidence               444444444555555555555555555555555554  444555555555555555555555555555555555555


Q ss_pred             hHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHH
Q psy904          283 SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL  318 (596)
Q Consensus       283 TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L  318 (596)
                      +++..|+..|+- +|+..|+.-++...+|+.-.||+
T Consensus       261 ~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~  295 (296)
T KOG0502|consen  261 WIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPL  295 (296)
T ss_pred             cHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCC
Confidence            555555555555 55555554444444444444443

>KOG0502|consensus

Probab=99.92  E-value=1.1e-24  Score=193.73  Aligned_cols=220  Identities=29%  Similarity=0.373  Sum_probs=181.3

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH
Q psy904          110 SDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF  189 (596)
Q Consensus       110 ~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~  189 (596)
                      .|...+..+...|+.+++..++...++...... ..|..+++.++-.|+++.+..++.++...+.. +..+.+|+.+++.
T Consensus        61 lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~-p~g~~~~~v~ap~~s~~k~sttltN~~rgnev-s~~p~s~~slsVh  138 (296)
T KOG0502|consen   61 LGESLLTVAVRSGNSDVAVQSAQLDPDAIDETD-PEGWSALLVAAPCGSVDKVSTTLTNGARGNEV-SLMPWSPLSLSVH  138 (296)
T ss_pred             cCCcccchhhhcCCcHHHHHhhccCCCCCCCCC-chhhhhhhhcCCCCCcceeeeeecccccCCcc-ccccCChhhHHHH
Confidence            344445556666666666555554443332222 23777888888888888888888877766655 5667788999998


Q ss_pred             cCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH
Q psy904          190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS  269 (596)
Q Consensus       190 ~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  269 (596)
                      ..+++.+..+.++  -+|..|..|.|||++|+..|++.+|++|++.|+++++  .-....++|.+|+..|..+||++||.
T Consensus       139 ql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~--lgk~resALsLAt~ggytdiV~lLL~  214 (296)
T KOG0502|consen  139 QLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDA--LGKYRESALSLATRGGYTDIVELLLT  214 (296)
T ss_pred             HHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhh--hhhhhhhhHhHHhcCChHHHHHHHHh
Confidence            8888888777654  4678899999999999999999999999999999987  44566799999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       270 ~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      +++|+|..|.+|-|||-||++.|+.+|++.||..|||++..+..|++++..|+..|.. +|+..+++
T Consensus       215 r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~  280 (296)
T KOG0502|consen  215 REVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEK  280 (296)
T ss_pred             cCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999987 77776654

>KOG0507|consensus

Probab=99.91  E-value=4.3e-24  Score=221.14  Aligned_cols=246  Identities=32%  Similarity=0.387  Sum_probs=198.0

Q ss_pred             cHHHHHHhcCcHHHHHHHHHC-----C--------CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC
Q psy904           13 TALTLACAGGHEELVELLLSR-----G--------ADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD   79 (596)
Q Consensus        13 t~L~~A~~~g~~~ivk~Ll~~-----g--------~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~   79 (596)
                      +-|.-||..|+++.|..||+.     |        .+++..|.+|+|+||.|+.+|+..++.+|+++.+-++... ..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d-~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCD-TKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhh-ccCc
Confidence            567889999999999999985     1        3467788999999999999999999999999988877665 6799


Q ss_pred             hHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCH
Q psy904           80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT  159 (596)
Q Consensus        80 t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~  159 (596)
                      +|||+|++.|+.++|++||.++..++..+..|.||||.|+..|+.+++.+|+.+|++......+  +.|+|.+|++.|..
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns--~~t~ldlA~qfgr~  161 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNS--KETVLDLASRFGRA  161 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcc--cccHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999988776654  88999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCC
Q psy904          160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV  239 (596)
Q Consensus       160 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~  239 (596)
                      .+|+.|+....  ....                      +.-.|  -..++..+.+|||.|+.+|+.++++.|++.|.++
T Consensus       162 ~Vvq~ll~~~~--~~~~----------------------~~~~~--~~~~~~~~~~plHlaakngh~~~~~~ll~ag~di  215 (854)
T KOG0507|consen  162 EVVQMLLQKKF--PVQS----------------------SLRVG--DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDI  215 (854)
T ss_pred             HHHHHHhhhcc--chhh----------------------cccCC--CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCc
Confidence            99999988621  1110                      11122  2334556667777777777777777777777777


Q ss_pred             CCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHh
Q psy904          240 NAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN  290 (596)
Q Consensus       240 ~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~  290 (596)
                      |...   ..-|+||.|+..|..++|.+|++.|++..++|.+|.|+|.+...
T Consensus       216 n~~t---~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d  263 (854)
T KOG0507|consen  216 NYTT---EDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIID  263 (854)
T ss_pred             cccc---ccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHh
Confidence            7543   33377777777777777777777777777777777777766554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.2e-23  Score=238.20  Aligned_cols=242  Identities=24%  Similarity=0.209  Sum_probs=187.3

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHC--CCCccccCCCCCcHHH-HHHHcCCHHHHHHHHhCCCCccccccCCCChHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSR--GADIEHRDKKGFTPLI-LAATAGHDKVVDILLNHKADMEAQSERTKDTPLSL   84 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~--g~~i~~~d~~g~t~L~-~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~   84 (596)
                      -+.+...|+.||..|+++.|+.+++.  +.++|..|..|.|||| .|+.+++.+++++|+++|.     .+..|.||||.
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~   88 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHA   88 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHH
Confidence            35667999999999999999999998  8999999999999999 8999999999999999987     35578999999


Q ss_pred             HHHCC---cHHHHHHHHhCCCC------c----cCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCC---------
Q psy904           85 ACSGG---RYEVVELLLTRGAN------K----EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG---------  142 (596)
Q Consensus        85 A~~~g---~~eivk~LL~~g~~------~----~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~---------  142 (596)
                      |+..+   ...++.+++..+..      +    ......|.||||+|+..|+.++|++|+++|++++....         
T Consensus        89 A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~  168 (743)
T TIGR00870        89 ISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQG  168 (743)
T ss_pred             HHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCC
Confidence            99732   22344444444322      1    11234689999999999999999999999999885421         


Q ss_pred             ---CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC---------CHHHHHHHHhcCCCc----
Q psy904          143 ---SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG---------RHEVVSLLLDRKANV----  206 (596)
Q Consensus       143 ---~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~---------~~~ii~~Ll~~g~~~----  206 (596)
                         ...|.+|||.|+..|+.+++++|+++|++++.. +..|+||||+|+..+         ...+.++++..+...    
T Consensus       169 ~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~-d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~  247 (743)
T TIGR00870       169 VDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA-DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSK  247 (743)
T ss_pred             CCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH-hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChH
Confidence               234789999999999999999999999988876 678899999999886         233555666554443    


Q ss_pred             ---ccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHH
Q psy904          207 ---EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD  257 (596)
Q Consensus       207 ---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~  257 (596)
                         +..|..|.||||+|+..|+.+++++|++.+.....  .....+.+.+.+..
T Consensus       248 el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~~kk--~~a~~~~~~~~~~~  299 (743)
T TIGR00870       248 ELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKK--FVAWPNGQQLLSLY  299 (743)
T ss_pred             hhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHhcce--eeccCcchHhHhhh
Confidence               55688899999999999999999999985433211  22334455555443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.91  E-value=8.3e-24  Score=219.05  Aligned_cols=252  Identities=28%  Similarity=0.299  Sum_probs=155.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCC------------ccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcH
Q psy904           47 PLILAATAGHDKVVDILLNHKAD------------MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP  114 (596)
Q Consensus        47 ~L~~A~~~g~~eiv~~Ll~~~~~------------~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~  114 (596)
                      -|.-|+..|+.+.+..||+....            -....+.+|.|+||.||.+|+..++++|+++.+-++..+..|.+|
T Consensus         6 el~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~p   85 (854)
T KOG0507|consen    6 ELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILP   85 (854)
T ss_pred             hHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcce
Confidence            45566666777776666654211            011122344455555555555555555555544444444445555


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHH
Q psy904          115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE  194 (596)
Q Consensus       115 L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~  194 (596)
                      ||+|+..|+.+++++|+..+                                   ..++.. ...|.||||.|+..|+.+
T Consensus        86 lhlaaw~g~~e~vkmll~q~-----------------------------------d~~na~-~~e~~tplhlaaqhgh~d  129 (854)
T KOG0507|consen   86 LHLAAWNGNLEIVKMLLLQT-----------------------------------DILNAV-NIENETPLHLAAQHGHLE  129 (854)
T ss_pred             EEehhhcCcchHHHHHHhcc-----------------------------------cCCCcc-cccCcCccchhhhhcchH
Confidence            55555555555555555444                                   333332 233444555555555555


Q ss_pred             HHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCC------CCCCCCCCCCcHHHHHHHcCcHHHHHHHH
Q psy904          195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV------NAPPVPSSRDTALTIAADKGHCRFVELLL  268 (596)
Q Consensus       195 ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~------~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll  268 (596)
                      ++.+|+.+|+++..++..+.|+|..|+..|...+++.|+....++      +....+..+.+|||.|+.+|+.++++.|+
T Consensus       130 vv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll  209 (854)
T KOG0507|consen  130 VVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALL  209 (854)
T ss_pred             HHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHH
Confidence            555555555555444445555555555555555554444431111      11224456789999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcC---CHHHHHHHHh
Q psy904          269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG---HVKAVRWMVN  335 (596)
Q Consensus       269 ~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~  335 (596)
                      ..|+|+|.....| |+||.|+..|..++|.+|++.|++.+++|..|.|+|++-...-   .++++-++..
T Consensus       210 ~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~~  278 (854)
T KOG0507|consen  210 EAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVKN  278 (854)
T ss_pred             hcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhhc
Confidence            9999999988776 7999999999999999999999999999999999998876553   3444444443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=6.6e-23  Score=233.48  Aligned_cols=174  Identities=25%  Similarity=0.305  Sum_probs=160.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      +.++|+.|+..|+.++++.|+..|++++.. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIG-DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKH  603 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            568999999999999999999999999876 7789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      .+++++|+..++..+.    ..+.++||.|+..|+.+++++|+++|+|+|.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       604 ~~iv~~L~~~~~~~~~----~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        604 HKIFRILYHFASISDP----HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             HHHHHHHHhcCcccCc----ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            9999999988765542    457799999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCC-CCHHHHHHHc
Q psy904          306 DIDSQDNRK-VSCLMAAFRK  324 (596)
Q Consensus       306 d~~~~~~~g-~t~L~~A~~~  324 (596)
                      +++..|..| .||+.++...
T Consensus       680 dv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        680 DVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHHH
Confidence            999999888 8998887543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.8e-23  Score=236.71  Aligned_cols=234  Identities=25%  Similarity=0.251  Sum_probs=144.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCChHHH-HHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHH
Q psy904           43 KGFTPLILAATAGHDKVVDILLNH--KADMEAQSERTKDTPLS-LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA  119 (596)
Q Consensus        43 ~g~t~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~t~L~-~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~  119 (596)
                      .+...|+.|+..|+.+.++.+++.  +.+++. .+..|.|||| .|+.+++.+++++|++.|.    .+..|.||||.|+
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~-~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~   90 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINC-PDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAIS   90 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCC-cCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHH
Confidence            455678888888888888888877  555543 3456778888 7777778888888887776    4566778888777


Q ss_pred             hcC---CHHHHHHHHhCCCCc------cc--cCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHH
Q psy904          120 SGG---YVNIIKLLLTHGAEI------NS--RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLAC  188 (596)
Q Consensus       120 ~~g---~~eiv~~Ll~~g~~~------~~--~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~  188 (596)
                      .++   ...++.++...+...      +.  ......|.||||+|+.+|+.+++++|+++|++++....  +..+.    
T Consensus        91 ~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~--~~~~~----  164 (743)
T TIGR00870        91 LEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARAC--GDFFV----  164 (743)
T ss_pred             hccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcC--Cchhh----
Confidence            622   122333343333210      00  01112356666666666666666666666666553211  00000    


Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcC---------
Q psy904          189 FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG---------  259 (596)
Q Consensus       189 ~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~---------  259 (596)
                                   .+.. ......|.||||.|+..|+.+++++|+++|++++.  .+..|+||||+|+..+         
T Consensus       165 -------------~~~~-~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~--~d~~g~T~Lh~A~~~~~~~~~~~~l  228 (743)
T TIGR00870       165 -------------KSQG-VDSFYHGESPLNAAACLGSPSIVALLSEDPADILT--ADSLGNTLLHLLVMENEFKAEYEEL  228 (743)
T ss_pred             -------------cCCC-CCcccccccHHHHHHHhCCHHHHHHHhcCCcchhh--HhhhhhHHHHHHHhhhhhhHHHHHH
Confidence                         0000 00113467777777777777777777777777665  4567777777777765         


Q ss_pred             cHHHHHHHHHCCCCC-------CCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904          260 HCRFVELLLSKGAQV-------EVKNKKGNSPLWLAANGGHLSVVELLCKH  303 (596)
Q Consensus       260 ~~~iv~~Ll~~g~di-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  303 (596)
                      ...+.+++++.++..       +..|.+|.||||+|+..|+.+++++|++.
T Consensus       229 ~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       229 SCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             HHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            223455555554433       55677888888888888888888888874

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.89  E-value=6.4e-23  Score=205.96  Aligned_cols=229  Identities=31%  Similarity=0.411  Sum_probs=167.6

Q ss_pred             HHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHH
Q psy904           81 PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA  160 (596)
Q Consensus        81 ~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~e  160 (596)
                      .+.-|+..|..+=|..||..|++++..+.+|.|+||-++...+.+||++|+++|++++..+..  +.||||.|+..|++.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e--~wtPlhaaascg~~~  120 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNE--GWTPLHAAASCGYLN  120 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccc--cCCcchhhcccccHH
Confidence            344556667777777777777777777777777777777777777777777777777665543  677777777777777


Q ss_pred             HHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccc-CCCChHHHHHHhcCcHHHHHHHHhCCCC
Q psy904          161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRA-KTGLTPLMEAASGGYVEVGRVLLDKGAD  238 (596)
Q Consensus       161 iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~  238 (596)
                      ++.+|+.+|+++... +..|..|+.++......+++...... |.+++..- ..-.+.|+        ++-.| +..|..
T Consensus       121 i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~--------D~~q~-l~~G~~  190 (527)
T KOG0505|consen  121 IVEYLIQHGANLLAV-NSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLD--------DARQW-LNAGAE  190 (527)
T ss_pred             HHHHHHHhhhhhhhc-cCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHH--------HHHHH-Hhcccc
Confidence            777777777766654 45566676666665555555554432 33321100 00111111        23334 448888


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHH
Q psy904          239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL  318 (596)
Q Consensus       239 ~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L  318 (596)
                      .++...  .|.|+||+|+..|..++..+|+++|.++++.|.+|+||||.|+.+|..+++++|+++|++.+..+..|.||+
T Consensus       191 ~d~~~~--rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~  268 (527)
T KOG0505|consen  191 LDARHA--RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPL  268 (527)
T ss_pred             cccccc--ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCc
Confidence            777543  399999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy904          319 MAAFR  323 (596)
Q Consensus       319 ~~A~~  323 (596)
                      .+|..
T Consensus       269 dv~de  273 (527)
T KOG0505|consen  269 DVADE  273 (527)
T ss_pred             cchhh
Confidence            99854

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=1.4e-21  Score=222.68  Aligned_cols=161  Identities=26%  Similarity=0.331  Sum_probs=150.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc
Q psy904          179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK  258 (596)
Q Consensus       179 ~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~  258 (596)
                      .+.++|+.|+..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+..
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~--~d~~G~TpL~~A~~~  601 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI--RDANGNTALWNAISA  601 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC--cCCCCCCHHHHHHHh
Confidence            456899999999999999999999999999999999999999999999999999999999987  567899999999999


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      |+.+++++|+..++..+.  ..|.+|||.|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            999999999998876543  457799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCc
Q psy904          339 QFPSD  343 (596)
Q Consensus       339 ~~~~~  343 (596)
                      ++...
T Consensus       680 dv~~~  684 (823)
T PLN03192        680 DVDKA  684 (823)
T ss_pred             CCCCC
Confidence            87654

>KOG0505|consensus

Probab=99.88  E-value=3.4e-22  Score=200.76  Aligned_cols=231  Identities=32%  Similarity=0.413  Sum_probs=175.7

Q ss_pred             HHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHH
Q psy904           14 ALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV   93 (596)
Q Consensus        14 ~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~ei   93 (596)
                      .|.-||..|..+-|..|+..|++++..+.+|.|+||-+|.-.+.+||+||+++|++++.. +..++||||.|+..||+.+
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~-d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQ-DNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccc-ccccCCcchhhcccccHHH
Confidence            456788888999999999988888888899999999999999999999999999888775 5578899999999999999


Q ss_pred             HHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Q psy904           94 VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDIN  173 (596)
Q Consensus        94 vk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~  173 (596)
                      +.+|+.+|+++...+..|..|+..+......+++......                       -           |.++.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r-----------------------~-----------gi~ie  167 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMAR-----------------------Q-----------GIDIE  167 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHH-----------------------h-----------cccHH
Confidence            9999999988888888887777666544333333322221                       0           11111


Q ss_pred             cccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHH
Q psy904          174 AQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT  253 (596)
Q Consensus       174 ~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~  253 (596)
                      ........+.|        .++..||. .|...+..+..|.|.||.|+..|+.++..+|+..|.++++  .+.+|.||||
T Consensus       168 a~R~~~e~~ml--------~D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~--~D~dgWtPlH  236 (527)
T KOG0505|consen  168 AARKAEEQTML--------DDARQWLN-AGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNI--KDYDGWTPLH  236 (527)
T ss_pred             HHhhhhHHHHH--------HHHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHhccCccc--ccccCCCccc
Confidence            10000011111        13344444 6777777777788999999999999999999999988888  5678889999


Q ss_pred             HHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHh
Q psy904          254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN  290 (596)
Q Consensus       254 ~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~  290 (596)
                      .|+..|..+++++|+++|++++.....|.|||.+|..
T Consensus       237 AAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  237 AAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            9999999999999999999999999999999988864

>KOG0514|consensus

Probab=99.87  E-value=6e-22  Score=189.02  Aligned_cols=159  Identities=34%  Similarity=0.479  Sum_probs=145.1

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhcC-CCcccccCCCChHHHHHHhc-----CcHHHHHHHHhCCCCCCCCCCCCCCC
Q psy904          176 IETNRNTALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASG-----GYVEVGRVLLDKGADVNAPPVPSSRD  249 (596)
Q Consensus       176 ~~~~~~t~L~~A~~~~~~~ii~~Ll~~g-~~~~~~~~~g~t~L~~A~~~-----g~~~iv~~Ll~~g~~~~~~~~~~~g~  249 (596)
                      .+.+|+|+||+++.++++++|+.||+.| ++++..+..|+||+++++..     .+..+|..|+..| ++|.. -...|.
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaK-AsQ~gQ  341 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAK-ASQHGQ  341 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchh-hhhhcc
Confidence            3789999999999999999999999986 78999999999999998753     4677888999886 66765 345799


Q ss_pred             cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC-CCCcccCCCCCCCHHHHHHHcCCHH
Q psy904          250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH-GADIDSQDNRKVSCLMAAFRKGHVK  328 (596)
Q Consensus       250 t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~~~~g~t~L~~A~~~g~~~  328 (596)
                      |+|++|+.+|+.++|+.||..|+|+|+.|.+|.|+||+|+..||.+|+++||.. ++|+..+|.+|.|+|.+|...||.+
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~e  421 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHRE  421 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchH
Confidence            999999999999999999999999999999999999999999999999999985 7999999999999999999999999


Q ss_pred             HHHHHHhC
Q psy904          329 AVRWMVNH  336 (596)
Q Consensus       329 iv~~Ll~~  336 (596)
                      |.-+|..+
T Consensus       422 Ia~mlYa~  429 (452)
T KOG0514|consen  422 IAVMLYAH  429 (452)
T ss_pred             HHHHHHHH
Confidence            99888765

>KOG0514|consensus

Probab=99.86  E-value=1.9e-21  Score=185.60  Aligned_cols=162  Identities=31%  Similarity=0.448  Sum_probs=139.2

Q ss_pred             CccCCCCCcHHHHHHhcCcHHHHHHHHHCC-CCccccCCCCCcHHHHHHHc-----CCHHHHHHHHhCCCCccccccCCC
Q psy904            5 SETESNHDTALTLACAGGHEELVELLLSRG-ADIEHRDKKGFTPLILAATA-----GHDKVVDILLNHKADMEAQSERTK   78 (596)
Q Consensus         5 ~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g-~~i~~~d~~g~t~L~~A~~~-----g~~eiv~~Ll~~~~~~~~~~~~~~   78 (596)
                      ...|+||+|+||||+..+++++|+.||+.| ++++..|.-|+||+|+|+..     .++.+|..|+.-| +++..-...|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhc
Confidence            456899999999999999999999999987 69999999999999999865     4778898888876 5666666789


Q ss_pred             ChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC
Q psy904           79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH  158 (596)
Q Consensus        79 ~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~  158 (596)
                      .|+|++|+..|+.++|+.||..|+++|..|.+|.|+|++|+..||.+|+++||.. +..+....+..|.|+|.+|...||
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~-p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAV-PSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhcc-CcccceeecCCCchhhhhHHhcCc
Confidence            9999999999999999999999999999999999999999999999999999976 223333333448899999999998


Q ss_pred             HHHHHHHHhc
Q psy904          159 TAAVKLLLDM  168 (596)
Q Consensus       159 ~eiv~~Ll~~  168 (596)
                      -+|.-+|..+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            8887776543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=5.8e-21  Score=174.76  Aligned_cols=139  Identities=15%  Similarity=0.248  Sum_probs=90.3

Q ss_pred             CCCcccccCCCChHHHHHHhcCcH----HHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHH---HHHHHHHCCCCCC
Q psy904          203 KANVEHRAKTGLTPLMEAASGGYV----EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR---FVELLLSKGAQVE  275 (596)
Q Consensus       203 g~~~~~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~---iv~~Ll~~g~di~  275 (596)
                      +++++..+..+.++||.|+..|+.    +++++|++.|+.++.  .+..|.||||+|+..|+.+   ++++|+++|++++
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~--~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHR--YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhc--cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            444555555666666666666665    444556666665554  4456667777777666543   3567777777777


Q ss_pred             CCC-CCCChHHHHHHhcCcHHHHHHHHH-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904          276 VKN-KKGNSPLWLAANGGHLSVVELLCK-HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       276 ~~d-~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  343 (596)
                      .++ ..|.||||+|+..|+.+++++|+. .|++++.++..|.||||+|+..++.+++++|+.+|+++..+
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP  157 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            666 367777777777777777777774 57777777777777777777777777777777777665544

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=2.1e-20  Score=171.03  Aligned_cols=136  Identities=20%  Similarity=0.209  Sum_probs=121.0

Q ss_pred             cCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHH---HHHHHhCCCCCCCCCCC-CCCC
Q psy904          178 TNRNTALTLACFQGRH----EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV---GRVLLDKGADVNAPPVP-SSRD  249 (596)
Q Consensus       178 ~~~~t~L~~A~~~~~~----~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~i---v~~Ll~~g~~~~~~~~~-~~g~  249 (596)
                      ..+.++||.||..|+.    +++++|++.|..++..+..|.||||+|+..|+.++   +++|+..|++++.  .+ ..|.
T Consensus        18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~--~d~~~g~   95 (166)
T PHA02743         18 EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA--RELGTGN   95 (166)
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC--CCCCCCC
Confidence            4556789999999988    56667788899999899999999999999987654   7899999999987  44 4799


Q ss_pred             cHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCC
Q psy904          250 TALTIAADKGHCRFVELLLS-KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV  315 (596)
Q Consensus       250 t~L~~A~~~~~~~iv~~Ll~-~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~  315 (596)
                      ||||+|+..++.+++++|+. .|++++..|..|.||||+|+..++.+++++|+.+|++++.++..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            99999999999999999995 8999999999999999999999999999999999999999887764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.6e-19  Score=177.94  Aligned_cols=151  Identities=20%  Similarity=0.215  Sum_probs=127.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCccccc----CCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHH
Q psy904          179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRA----KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI  254 (596)
Q Consensus       179 ~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~----~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~  254 (596)
                      ...++||.|+..++.+++++|+++|++++..+    ..|.||||+|+..|+.+++++|+++|++++... +..|.||||+
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~-~~~g~TpLh~  110 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYA-EEAKITPLYI  110 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCccc-CCCCCCHHHH
Confidence            34477888888899999999999999998763    589999999999999999999999999998631 3468999999


Q ss_pred             HHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy904          255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV  334 (596)
Q Consensus       255 A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  334 (596)
                      |+..++.+++++|+.+|++++.+|..|.||||+|+..++..++.++..  ..   .+..+.+|++++   ++.+++++|+
T Consensus       111 Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~---~n~ei~~~Li  182 (300)
T PHA02884        111 SVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD--NE---ISNFYKHPKKIL---INFDILKILV  182 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC--Cc---ccccccChhhhh---ccHHHHHHHH
Confidence            999999999999999999999999999999999999888888766653  22   355667888875   4789999999


Q ss_pred             hCcC
Q psy904          335 NHVA  338 (596)
Q Consensus       335 ~~~~  338 (596)
                      +|+.
T Consensus       183 sh~v  186 (300)
T PHA02884        183 SHFI  186 (300)
T ss_pred             HHHH
Confidence            9887

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=7.8e-20  Score=168.09  Aligned_cols=130  Identities=23%  Similarity=0.327  Sum_probs=107.5

Q ss_pred             cccCCCChHHHHHHhcCcHHHHHHHHh------CCCCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHCCCCCCCC
Q psy904          208 HRAKTGLTPLMEAASGGYVEVGRVLLD------KGADVNAPPVPSSRDTALTIAADKGH----CRFVELLLSKGAQVEVK  277 (596)
Q Consensus       208 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~------~g~~~~~~~~~~~g~t~L~~A~~~~~----~~iv~~Ll~~g~di~~~  277 (596)
                      ..+..|.||||+|+..|+.+++++|+.      .|++++.  .+..|.||||+|+..|+    .+++++|+++|++++.+
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~--~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNA--TDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhc--cCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            456678888888888888888887753      2455554  56778899999998888    57888999999999988


Q ss_pred             CC-CCChHHHHHHhcCcHHHHHHHHH-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          278 NK-KGNSPLWLAANGGHLSVVELLCK-HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       278 d~-~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      +. .|.||||+|+..++.+++++|+. .|++++..|..|.|||++|+..++.+++++|+..++.
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            85 89999999999999999999997 5899998899999999999999999999998887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.9e-19  Score=177.44  Aligned_cols=154  Identities=22%  Similarity=0.227  Sum_probs=122.7

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccC----CCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHH
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRD----KKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPL   82 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d----~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L   82 (596)
                      +...-.++||.|+..|+.++|++|+++|++++..+    ..|.||||+|+..|+.+++++|+++|++++...+..|.|||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL  108 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL  108 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence            34444567788888899999999999999998864    57899999999999999999999999988876556788999


Q ss_pred             HHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHH
Q psy904           83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV  162 (596)
Q Consensus        83 ~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv  162 (596)
                      |+|+..|+.+++++|+.+|++++..+..|.||||+|+..++..++..+...+  .     +.++.+|++.+   ++.+++
T Consensus       109 h~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~---~n~ei~  178 (300)
T PHA02884        109 YISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE--I-----SNFYKHPKKIL---INFDIL  178 (300)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc--c-----cccccChhhhh---ccHHHH
Confidence            9999999999999999999999999999999999999888888775554322  1     22355676654   467888


Q ss_pred             HHHHhcCC
Q psy904          163 KLLLDMGS  170 (596)
Q Consensus       163 ~~Ll~~~~  170 (596)
                      ++|+.++.
T Consensus       179 ~~Lish~v  186 (300)
T PHA02884        179 KILVSHFI  186 (300)
T ss_pred             HHHHHHHH
Confidence            88877665

>PHA02741 hypothetical protein; Provisional

Probab=99.80  E-value=4.4e-19  Score=163.11  Aligned_cols=129  Identities=22%  Similarity=0.286  Sum_probs=94.5

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHH------CCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHhCCCCccccccC
Q psy904            7 TESNHDTALTLACAGGHEELVELLLS------RGADIEHRDKKGFTPLILAATAGH----DKVVDILLNHKADMEAQSER   76 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~------~g~~i~~~d~~g~t~L~~A~~~g~----~eiv~~Ll~~~~~~~~~~~~   76 (596)
                      .+..|.|+||+||..|+.++|++|+.      .|++++..|..|.||||+|+..|+    .+++++|+..|++++.....
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            45667788888888888888777743      256777777777888888887777    47777777777777655334


Q ss_pred             CCChHHHHHHHCCcHHHHHHHHh-CCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCC
Q psy904           77 TKDTPLSLACSGGRYEVVELLLT-RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA  135 (596)
Q Consensus        77 ~~~t~L~~A~~~g~~eivk~LL~-~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~  135 (596)
                      .|.||||+|+..++.+++++|+. .|++++..+..|.||||+|+..++.+++++|+..+.
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            67777777777777777777776 477777777777777777777777777777776543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.80  E-value=2e-19  Score=163.00  Aligned_cols=132  Identities=20%  Similarity=0.233  Sum_probs=102.4

Q ss_pred             ccccCCCChHHHHHHhcCcHHHHHHHHhCCC--CCC---CCCCCCCCCcHHHHHHHcCcHH---HHHHHHHCCCCCCCCC
Q psy904          207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGA--DVN---APPVPSSRDTALTIAADKGHCR---FVELLLSKGAQVEVKN  278 (596)
Q Consensus       207 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~--~~~---~~~~~~~g~t~L~~A~~~~~~~---iv~~Ll~~g~di~~~d  278 (596)
                      +..+..|.||||+|+..|+.  +.+++..+.  +.+   ....+..|.||||+|+..|+.+   ++++|+++|++++.++
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            44566788888888888773  222222211  111   1123567889999999988764   6888999999999988


Q ss_pred             -CCCChHHHHHHhcCcHHHHHHHHH-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904          279 -KKGNSPLWLAANGGHLSVVELLCK-HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF  340 (596)
Q Consensus       279 -~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  340 (596)
                       ..|.||||+|+..|+.+++++|+. .|++++..+..|.|||++|+..|+.+++++|+.+|++.
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence             489999999999999999999997 48999999999999999999999999999999998864

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=157.91  Aligned_cols=130  Identities=22%  Similarity=0.348  Sum_probs=89.3

Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHCCC--C-----ccccCCCCCcHHHHHHHcCCHH---HHHHHHhCCCCcccccc
Q psy904            6 ETESNHDTALTLACAGGHEELVELLLSRGA--D-----IEHRDKKGFTPLILAATAGHDK---VVDILLNHKADMEAQSE   75 (596)
Q Consensus         6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~--~-----i~~~d~~g~t~L~~A~~~g~~e---iv~~Ll~~~~~~~~~~~   75 (596)
                      ..|.+|.||||+||..|++  +.+++..+.  +     ++..|..|.||||+|+..|+.+   ++++|+..|++++...+
T Consensus        12 ~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            4456778888888888773  333322211  1     2345677777888777777663   56777777777766544


Q ss_pred             CCCChHHHHHHHCCcHHHHHHHHh-CCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCc
Q psy904           76 RTKDTPLSLACSGGRYEVVELLLT-RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI  137 (596)
Q Consensus        76 ~~~~t~L~~A~~~g~~eivk~LL~-~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~  137 (596)
                      ..|.||||+|+..|+.+++++|+. .|++++..+..|.||||+|+..|+.+++++|+.+|++.
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            567777777777777777777776 47777777777777777777777777777777777654

>KOG0512|consensus

Probab=99.76  E-value=1.3e-17  Score=143.44  Aligned_cols=142  Identities=30%  Similarity=0.285  Sum_probs=122.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC-cccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904          182 TALTLACFQGRHEVVSLLLDRKAN-VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH  260 (596)
Q Consensus       182 t~L~~A~~~~~~~ii~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~  260 (596)
                      ..+..|+..+.+..|+.||+..++ +|.+|.+|+||||.|+.+|+++||..|+..|++++.  ....|.||||.||...+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a--~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA--KTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc--ccccCccchhhhhcccc
Confidence            456678888888888888876554 788899999999999999999999999999999888  44789999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHH-HHHHHH-HCCCCcccCCCCCCCHHHHHHHcC
Q psy904          261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS-VVELLC-KHGADIDSQDNRKVSCLMAAFRKG  325 (596)
Q Consensus       261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~-iv~~Ll-~~gad~~~~~~~g~t~L~~A~~~g  325 (596)
                      ++++-+||++|+|+|.......||||+|+...+.. .+.+|+ ..++++...+..+.||+.+|-+.+
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            99999999999999999999999999999876654 555555 457888888999999999997765

>KOG0512|consensus

Probab=99.75  E-value=2.1e-17  Score=142.17  Aligned_cols=147  Identities=31%  Similarity=0.325  Sum_probs=116.9

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHCCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHC
Q psy904           10 NHDTALTLACAGGHEELVELLLSRGAD-IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG   88 (596)
Q Consensus        10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~-i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   88 (596)
                      +..-.+.+|+..|.+..|+.||+..++ +|.+|.+|+||||-|+++|+.+||+.|+..|++....+ ..|+||||.||..
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T-~~GWTPLhSAckW  140 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKT-NEGWTPLHSACKW  140 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccccc-ccCccchhhhhcc
Confidence            334567789999999999999987654 89999999999999999999999999999999988765 4799999999999


Q ss_pred             CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC
Q psy904           89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG  157 (596)
Q Consensus        89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g  157 (596)
                      ++++++-+||++|++++.......||||+|+.+.+.-+.-.+|-....+.....+..+.||+.+|-+.+
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999999999988889999999987776543333333333333334444778888876664

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=4.3e-17  Score=132.92  Aligned_cols=89  Identities=44%  Similarity=0.711  Sum_probs=68.2

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHH
Q psy904          217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV  296 (596)
Q Consensus       217 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~i  296 (596)
                      ||+|+..|+.+++++|++.+.+++.      |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHH
Confidence            6778888888888888887766553      6678888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHCCCCcccCC
Q psy904          297 VELLCKHGADIDSQD  311 (596)
Q Consensus       297 v~~Ll~~gad~~~~~  311 (596)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            888888888877654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676|consensus

Probab=99.72  E-value=1.1e-16  Score=169.00  Aligned_cols=212  Identities=24%  Similarity=0.264  Sum_probs=134.9

Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCC-------CccccCCCCCCCcHHHHHHHc---CCHHHHHHHHhcCC----Cccccccc
Q psy904          113 TPLSLAASGGYVNIIKLLLTHGA-------EINSRTGSKLGISPLMLAAMN---GHTAAVKLLLDMGS----DINAQIET  178 (596)
Q Consensus       113 t~L~~A~~~g~~eiv~~Ll~~g~-------~~~~~~~~~~g~t~L~~A~~~---g~~eiv~~Ll~~~~----~~~~~~~~  178 (596)
                      .++..|...+....+..|+..+-       +.........|.|+||.|..+   ++.++++.|++.-+    ++-.....
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            44455555555555444443331       122222233355666666543   33355555555432    11122234


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc
Q psy904          179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK  258 (596)
Q Consensus       179 ~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~  258 (596)
                      .|.||||+|+.+.+.++|.+|+..|+|++.+.....   ..+--.   ...+      ...|++..-.-|..||..|+..
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F---F~~~dq---k~~r------k~T~Y~G~~YfGEyPLSfAAC~  250 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF---FCPDDQ---KASR------KSTNYTGYFYFGEYPLSFAACT  250 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc---cCcccc---cccc------cccCCcceeeeccCchHHHHHc
Confidence            455666666666666666666666665544321100   000000   0000      0111111234577999999999


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD--IDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      ++.+++++|+++|+|++.+|.+|+|.||..+..-..+|..+++.+|++  ...+|..|.|||.+|++.|..+|++.+++.
T Consensus       251 nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  251 NQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999  889999999999999999999999999988

>KOG0195|consensus

Probab=99.71  E-value=2.8e-17  Score=152.40  Aligned_cols=118  Identities=33%  Similarity=0.440  Sum_probs=86.0

Q ss_pred             cCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC
Q psy904          202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKG  281 (596)
Q Consensus       202 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g  281 (596)
                      ...+.|.-|..|.+|||+|+..|+..+++.|+..|+.+|.  .+....||||+|+..|+.++|..|++..+|+|..|..|
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~--tnmgddtplhlaaahghrdivqkll~~kadvnavnehg  100 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS--TNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHG  100 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHHhccccccc--ccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccC
Confidence            3455666667777777777777777777777777777776  33344577777777777777777777777777777777


Q ss_pred             ChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy904          282 NSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA  321 (596)
Q Consensus       282 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A  321 (596)
                      +|||||||..|+-.+.+-|+..|+-+++.|..|.|||..|
T Consensus       101 ntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             CCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            7777777777777777777777777777777777777765

>KOG3676|consensus

Probab=99.69  E-value=3.3e-16  Score=165.43  Aligned_cols=211  Identities=27%  Similarity=0.250  Sum_probs=161.2

Q ss_pred             hHHHHHHHCCcHHHHHHHHhCC---------CCccCCCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCcc---ccCCCC
Q psy904           80 TPLSLACSGGRYEVVELLLTRG---------ANKEHRNVSDYTPLSLAASG---GYVNIIKLLLTHGAEIN---SRTGSK  144 (596)
Q Consensus        80 t~L~~A~~~g~~eivk~LL~~g---------~~~~~~d~~g~t~L~~A~~~---g~~eiv~~Ll~~g~~~~---~~~~~~  144 (596)
                      .++..|...+.+.....|+..+         ++++.+...|.|.||.|..+   ++-+++..|++..+.+-   ......
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            6777888888888777776655         56677777899999999873   45578888888654321   223345


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcC
Q psy904          145 LGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG  224 (596)
Q Consensus       145 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  224 (596)
                      +|.||||+|+.+.+.++|.+|+..|+|++......-..|=..  ...+         ...+....-+.|..||.+|+..+
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dq--k~~r---------k~T~Y~G~~YfGEyPLSfAAC~n  251 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQ--KASR---------KSTNYTGYFYFGEYPLSFAACTN  251 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccc--cccc---------cccCCcceeeeccCchHHHHHcC
Confidence            699999999999999999999999999876521110000000  0000         11222222356889999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC--CCCCCCCCChHHHHHHhcCcHHHHHHHHH
Q psy904          225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ--VEVKNKKGNSPLWLAANGGHLSVVELLCK  302 (596)
Q Consensus       225 ~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d--i~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  302 (596)
                      +.+++++|+++|+|++.  .|+.|+|.||+.+..-..++..+++++|++  ..++|+.|.|||.+|+..|..+|++.+++
T Consensus       252 q~eivrlLl~~gAd~~a--qDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile  329 (782)
T KOG3676|consen  252 QPEIVRLLLAHGADPNA--QDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILE  329 (782)
T ss_pred             CHHHHHHHHhcCCCCCc--cccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHH
Confidence            99999999999999988  678999999999999889999999999998  88899999999999999999999999988


Q ss_pred             C
Q psy904          303 H  303 (596)
Q Consensus       303 ~  303 (596)
                      .
T Consensus       330 ~  330 (782)
T KOG3676|consen  330 R  330 (782)
T ss_pred             h
Confidence            7

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=6.3e-16  Score=134.10  Aligned_cols=124  Identities=47%  Similarity=0.716  Sum_probs=106.8

Q ss_pred             ccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy904          209 RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA  288 (596)
Q Consensus       209 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A  288 (596)
                      .+..|.||||.|+..|+.+++.+|+..+.+.+.  .+..|.||||.|+..++.+++++|+.+|++++..+..|.||+|+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~--~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLA   80 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            346688888888888888888888888877644  556888999999999999999999999888888888889999999


Q ss_pred             HhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy904          289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV  334 (596)
Q Consensus       289 ~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  334 (596)
                      +..++.+++++|+.+|.+++..+..|.||+++|+..++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999998888888888999999999999988888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.68  E-value=2.8e-16  Score=128.10  Aligned_cols=87  Identities=38%  Similarity=0.612  Sum_probs=81.7

Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHH
Q psy904          252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR  331 (596)
Q Consensus       252 L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~  331 (596)
                      ||+|+..|+++++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.+|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988887    899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCcCCCCC
Q psy904          332 WMVNHVAQFPS  342 (596)
Q Consensus       332 ~Ll~~~~~~~~  342 (596)
                      +|+++|+++..
T Consensus        77 ~Ll~~g~~~~~   87 (89)
T PF12796_consen   77 LLLEHGADVNI   87 (89)
T ss_dssp             HHHHTTT-TTS
T ss_pred             HHHHcCCCCCC
Confidence            99999998654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195|consensus

Probab=99.67  E-value=9.6e-17  Score=148.88  Aligned_cols=131  Identities=34%  Similarity=0.347  Sum_probs=110.3

Q ss_pred             cccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHH
Q psy904          176 IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIA  255 (596)
Q Consensus       176 ~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A  255 (596)
                      .+..|.+|||+|+..|+..+++.|+..|+.+|..+....||||+|+..|+-++|+.|++..+|+|.  ++..|+||||+|
T Consensus        30 gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvna--vnehgntplhya  107 (448)
T KOG0195|consen   30 GDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA--VNEHGNTPLHYA  107 (448)
T ss_pred             ccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch--hhccCCCchhhh
Confidence            467788999999999999999999999999999998899999999999999999999999999888  778999999999


Q ss_pred             HHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcc
Q psy904          256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID  308 (596)
Q Consensus       256 ~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  308 (596)
                      |..|...+.+-|+..|+-+++.|+.|.|||..|--.-...+.++.-++|-.++
T Consensus       108 cfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999988743222222333334566554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=2.7e-15  Score=130.09  Aligned_cols=123  Identities=45%  Similarity=0.717  Sum_probs=107.0

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      +.+|.||||.|+..|+.+++++|+..|.+.+..+..|.||||+|+..++.+++++|+..++.+... +..+.||+|+|+.
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~l~~a~~   82 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR-DKDGNTPLHLAAR   82 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-CCCCCCHHHHHHH
Confidence            467889999999999999999999999888888889999999999999999999999998766544 4677899999999


Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHH
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL  131 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll  131 (596)
                      .++.+++++|+..+.+++..+..+.||+++|+..++.+++++|+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999988888888888889999998888888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.58  E-value=7.4e-15  Score=113.07  Aligned_cols=104  Identities=29%  Similarity=0.374  Sum_probs=93.8

Q ss_pred             hHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904          215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       215 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~  294 (596)
                      -.+.+++.+|.++-|+..+..|.++|-.   ..|.+|||+|+.+|.+.+++||+..|++++.+|+.|-|||..|+..||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~---~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI---YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH---hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            3478899999999999999999777643   3789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy904          295 SVVELLCKHGADIDSQDNRKVSCLMAA  321 (596)
Q Consensus       295 ~iv~~Ll~~gad~~~~~~~g~t~L~~A  321 (596)
                      ++|++|+++|+|-.....+|.+.+..+
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999998888887766544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.51  E-value=7.2e-13  Score=127.72  Aligned_cols=128  Identities=37%  Similarity=0.527  Sum_probs=106.6

Q ss_pred             cccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc-----HHHHHHHHHCCC---CCCCCCC
Q psy904          208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH-----CRFVELLLSKGA---QVEVKNK  279 (596)
Q Consensus       208 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~-----~~iv~~Ll~~g~---di~~~d~  279 (596)
                      ..+..+.++++.++..+...++.+|+..|++++.  .+..|.||||+|+..++     .+++++|+..|+   +++..|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA--KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCccc--ccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            3445577888888888888888888888888765  56778888888888888     888888888888   5556688


Q ss_pred             CCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904          280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV  337 (596)
Q Consensus       280 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  337 (596)
                      .|.||||+|+..|+.+++.+|+..|++++.++..|.|+++.|...++..++.+|+..+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            8889999998888888888888888888888888889999998888888888888876

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.50  E-value=9.7e-13  Score=126.81  Aligned_cols=127  Identities=37%  Similarity=0.497  Sum_probs=116.4

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc-----HHHHHHHHhCCC--CCCCCCCCCCCC
Q psy904          177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY-----VEVGRVLLDKGA--DVNAPPVPSSRD  249 (596)
Q Consensus       177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-----~~iv~~Ll~~g~--~~~~~~~~~~g~  249 (596)
                      +..+.++++.++..+...++.+++..|.+++..+..|.||||+|+..++     .+++++|+..|+  +++. ..+..|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~-~~~~~g~  148 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN-LRDEDGN  148 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc-ccCCCCC
Confidence            4456799999999999999999999999999999999999999999999     999999999999  3333 2578999


Q ss_pred             cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       250 t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      ||||+|+..|+.+++.+|++.|++++..+..|.|+|+.|+..++..++.+|+..+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999976

>KOG4214|consensus

Probab=99.46  E-value=2.3e-13  Score=104.95  Aligned_cols=102  Identities=23%  Similarity=0.336  Sum_probs=75.5

Q ss_pred             cHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHH
Q psy904           13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYE   92 (596)
Q Consensus        13 t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~e   92 (596)
                      --+.|++++|.++-|+..+..|.++|..- .|.+|||||+.+|+..++.||+..|++++.. +..|.|||..|++.||.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~k-DKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDK-DKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCc-cccCCcHHHHHHHHhhHH
Confidence            34667788888888888777777777653 6777888888888888888888877777654 567777887777778888


Q ss_pred             HHHHHHhCCCCccCCCCCCCcHHH
Q psy904           93 VVELLLTRGANKEHRNVSDYTPLS  116 (596)
Q Consensus        93 ivk~LL~~g~~~~~~d~~g~t~L~  116 (596)
                      +|++||+.|++-.....+|.+.+.
T Consensus        82 cVklLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   82 CVKLLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHcCcccceeCCCchhHHh
Confidence            888887777776666666655544

>KOG1710|consensus

Probab=99.39  E-value=2.2e-12  Score=120.23  Aligned_cols=121  Identities=33%  Similarity=0.341  Sum_probs=80.9

Q ss_pred             ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC-CCCCChHHHHHHhcC
Q psy904          214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVK-NKKGNSPLWLAANGG  292 (596)
Q Consensus       214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~-d~~g~TpL~~A~~~g  292 (596)
                      ..||..++-.|..+.+..||+.--.+|.  .|.+|.|+|..|+..|+.+++++||++|+|+|.. +..+.||||+|+.+|
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~--~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQ--RDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhc--cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            3566666666666666666655333444  5566777777777777777777777777776643 445677777777777


Q ss_pred             cHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          293 HLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       293 ~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      +.++..+|++.|+.+...|.-|.|+-..|+.-|+.++|..+-++
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            77777777777777777777777777777777777776665544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.38  E-value=3.7e-13  Score=98.53  Aligned_cols=55  Identities=44%  Similarity=0.594  Sum_probs=30.2

Q ss_pred             HHHCC-CCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy904          267 LLSKG-AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA  321 (596)
Q Consensus       267 Ll~~g-~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A  321 (596)
                      ||++| ++++..|..|.||||+|+..|+.++|++|+..|++++.+|..|.|||++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88888888888888888888888888888888888888888888888886

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.37  E-value=1.3e-12  Score=95.11  Aligned_cols=54  Identities=44%  Similarity=0.628  Sum_probs=45.6

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q psy904           11 HDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL   64 (596)
Q Consensus        11 g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll   64 (596)
                      |.|+||+||..|+++++++|++.|++++..|..|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999986

...

>KOG0515|consensus

Probab=99.36  E-value=2.4e-12  Score=128.91  Aligned_cols=119  Identities=21%  Similarity=0.278  Sum_probs=94.1

Q ss_pred             hHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904          215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       215 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~  294 (596)
                      ..|..|+..|-+++|+..+..-.|+..  .+..|.|+||-|+..|+++||+||++.|+++|..|.+||||||+|+..+++
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSq--pNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQ--PNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCC--CCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            345567788888988888876666554  446788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCcccCC-CCCCCHHHHHH--HcCCHHHHHHHHh
Q psy904          295 SVVELLCKHGADIDSQD-NRKVSCLMAAF--RKGHVKAVRWMVN  335 (596)
Q Consensus       295 ~iv~~Ll~~gad~~~~~-~~g~t~L~~A~--~~g~~~iv~~Ll~  335 (596)
                      -|++.|++.|+-|-+.. .++.|+..-+-  ..|...+.+||..
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            99999999887765544 56778776653  4477778888764

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.35  E-value=2e-12  Score=94.17  Aligned_cols=53  Identities=40%  Similarity=0.685  Sum_probs=24.0

Q ss_pred             CChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy904          281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM  333 (596)
Q Consensus       281 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~L  333 (596)
                      |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+++++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555544

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.34  E-value=5.2e-12  Score=140.25  Aligned_cols=105  Identities=33%  Similarity=0.452  Sum_probs=82.8

Q ss_pred             hHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904          215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       215 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~  294 (596)
                      +.|+.|+..|+.+++++|+..|+++|.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~--~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNC--RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcH
Confidence            347777888888888888888887776  456778888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHC-------CCCcccCCCCCCCHHHHH
Q psy904          295 SVVELLCKH-------GADIDSQDNRKVSCLMAA  321 (596)
Q Consensus       295 ~iv~~Ll~~-------gad~~~~~~~g~t~L~~A  321 (596)
                      +++++|+.+       |++++..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            888888877       777777777777665543

>KOG1710|consensus

Probab=99.34  E-value=6.4e-12  Score=117.11  Aligned_cols=124  Identities=29%  Similarity=0.321  Sum_probs=116.2

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCC
Q psy904           10 NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG   89 (596)
Q Consensus        10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g   89 (596)
                      ...++|..++-.|+.+-+..||+.--++|.+|..|+|+|..|+..|+.++|++|++.|++++......+.||||+|+.+|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            34589999999999999999999877799999999999999999999999999999999999998889999999999999


Q ss_pred             cHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhC
Q psy904           90 RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH  133 (596)
Q Consensus        90 ~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~  133 (596)
                      +.++..+||+.|+.+...+.-|.|+-..|+.-|+.++|..+-.+
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999999999999999999999999998876543

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.29  E-value=1.2e-11  Score=137.33  Aligned_cols=87  Identities=29%  Similarity=0.407  Sum_probs=84.9

Q ss_pred             cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHH
Q psy904          250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKA  329 (596)
Q Consensus       250 t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~i  329 (596)
                      +.|+.|+..|+.+++++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC
Q psy904          330 VRWMVNH  336 (596)
Q Consensus       330 v~~Ll~~  336 (596)
                      +++|+.+
T Consensus       164 v~~Ll~~  170 (664)
T PTZ00322        164 VQLLSRH  170 (664)
T ss_pred             HHHHHhC
Confidence            9999999

>KOG0515|consensus

Probab=99.28  E-value=1.3e-11  Score=123.74  Aligned_cols=93  Identities=23%  Similarity=0.261  Sum_probs=87.2

Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHH
Q psy904          251 ALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV  330 (596)
Q Consensus       251 ~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv  330 (596)
                      .|.-|+..|.+++|+-.+..--|+...|..|-|+||-|+..||.+||+|||++|+++|..|.+|+||||+|+..++..|+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            45567888999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCcCCCCCc
Q psy904          331 RWMVNHVAQFPSD  343 (596)
Q Consensus       331 ~~Ll~~~~~~~~~  343 (596)
                      +.|+++|+-+...
T Consensus       633 kqLVe~GaavfAs  645 (752)
T KOG0515|consen  633 KQLVESGAAVFAS  645 (752)
T ss_pred             HHHHhccceEEee
Confidence            9999999976654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.24  E-value=7.6e-12  Score=91.57  Aligned_cols=55  Identities=47%  Similarity=0.662  Sum_probs=31.7

Q ss_pred             HHhCC-CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy904          232 LLDKG-ADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA  288 (596)
Q Consensus       232 Ll~~g-~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A  288 (596)
                      ||+.| .+++.  .+..|.||||+||..|+.+++++|+..|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~--~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNA--QDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcC--cCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56677 55554  778999999999999999999999999999999999999999987

>KOG0818|consensus

Probab=98.77  E-value=3.7e-08  Score=98.66  Aligned_cols=86  Identities=31%  Similarity=0.389  Sum_probs=62.7

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHH
Q psy904          217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV  296 (596)
Q Consensus       217 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~i  296 (596)
                      ||..++.|+++..-.||..|+++|+. -+..|.||||+|+..|+.--+++|+-+|+|++..|.+|.||+.+|-..||-++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~-hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFF-HPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCC-CcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            77777777777777777777777765 34567777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHC
Q psy904          297 VELLCKH  303 (596)
Q Consensus       297 v~~Ll~~  303 (596)
                      .+-|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            7766653

>KOG0783|consensus

Probab=98.71  E-value=1e-08  Score=108.39  Aligned_cols=84  Identities=35%  Similarity=0.355  Sum_probs=46.7

Q ss_pred             cccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHH
Q psy904          206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL  285 (596)
Q Consensus       206 ~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL  285 (596)
                      .+..|..|.++||+++..+...+++||+++|++++..+ ...|.||||-|+.+|+++++-.||.+|+.+.+.|+.|.+||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD-~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQD-EESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecc-ccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence            34455555555555555555555555555555555442 23455555555555555555555555555555555555555


Q ss_pred             HHHHh
Q psy904          286 WLAAN  290 (596)
Q Consensus       286 ~~A~~  290 (596)
                      .+.++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            54443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.68  E-value=2.3e-08  Score=62.33  Aligned_cols=29  Identities=48%  Similarity=0.928  Sum_probs=20.3

Q ss_pred             CCChHHHHHHhcCcHHHHHHHHHCCCCcc
Q psy904          280 KGNSPLWLAANGGHLSVVELLCKHGADID  308 (596)
Q Consensus       280 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  308 (596)
                      +|+||||+|+..|+.++|++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36677777777777777777777777665

>KOG0818|consensus

Probab=98.65  E-value=1e-07  Score=95.59  Aligned_cols=84  Identities=33%  Similarity=0.412  Sum_probs=53.6

Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCC-CCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHH
Q psy904          252 LTIAADKGHCRFVELLLSKGAQVEVKN-KKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV  330 (596)
Q Consensus       252 L~~A~~~~~~~iv~~Ll~~g~di~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv  330 (596)
                      ||..++.|+.++.=-||..|+++|..+ ..|.||||+|+..|+..-+++|+-+|||+...|..|+||+.+|-..||..+.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            566666666666666666666666554 3466666666666666666666666666666666666666666666666655


Q ss_pred             HHHHh
Q psy904          331 RWMVN  335 (596)
Q Consensus       331 ~~Ll~  335 (596)
                      +-|++
T Consensus       217 eRl~e  221 (669)
T KOG0818|consen  217 ERLVE  221 (669)
T ss_pred             HHHHH
Confidence            55544

>KOG0782|consensus

Probab=98.63  E-value=7.1e-08  Score=97.93  Aligned_cols=118  Identities=18%  Similarity=0.240  Sum_probs=89.1

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC--CCCCCCCCChHHHHHHhcCcH
Q psy904          217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ--VEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       217 L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d--i~~~d~~g~TpL~~A~~~g~~  294 (596)
                      |..|+..+.+--++-+..+|.++-+  ......+.||+|+..|+-+||+|||++|..  ++..|..|.|+||.|+..++-
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~--~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLI--QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEe--eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            3445555555444555555555554  345566888888888888888888888743  456678888888888888888


Q ss_pred             HHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       295 ~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      .+..+|++.|+.+..+|..|.||-.-|-..|..++..||-+.
T Consensus       948 ~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  948 AVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            888888888888888888888888888888888888887654

>PF13606 Ank_3: Ankyrin repeat

Probab=98.62  E-value=4.2e-08  Score=61.15  Aligned_cols=29  Identities=45%  Similarity=0.714  Sum_probs=23.4

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHCCCCcc
Q psy904           10 NHDTALTLACAGGHEELVELLLSRGADIE   38 (596)
Q Consensus        10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~   38 (596)
                      +|+||||+||..|++++|++||++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            57788888888888888888888888776

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.59  E-value=7.1e-08  Score=61.97  Aligned_cols=32  Identities=56%  Similarity=0.928  Sum_probs=23.3

Q ss_pred             CCChHHHHHHhcCcHHHHHHHHHCCCCcccCC
Q psy904          280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQD  311 (596)
Q Consensus       280 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~  311 (596)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36777777777777777777777777777665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783|consensus

Probab=98.56  E-value=3.8e-08  Score=104.28  Aligned_cols=84  Identities=25%  Similarity=0.361  Sum_probs=76.6

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHH
Q psy904           37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLS  116 (596)
Q Consensus        37 i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~  116 (596)
                      .|..|..|.|+||+|+..|...+++|||++|.++..++...|+||||-|+..|+++++-+||.+|......|..|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            67888999999999999999999999999999999988889999999999999999999999999999999999999998


Q ss_pred             HHHh
Q psy904          117 LAAS  120 (596)
Q Consensus       117 ~A~~  120 (596)
                      +.+.
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8765

>KOG0782|consensus

Probab=98.53  E-value=3.4e-07  Score=93.12  Aligned_cols=119  Identities=19%  Similarity=0.222  Sum_probs=101.1

Q ss_pred             HHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCc-cccccCCCChHHHHHHHCCcHHH
Q psy904           15 LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM-EAQSERTKDTPLSLACSGGRYEV   93 (596)
Q Consensus        15 L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~t~L~~A~~~g~~ei   93 (596)
                      |..|+..+++--++-+..+|-++-+++.+..|.||+|+.-|+-++|+|||++|+.- ....+..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            55677777776667777788888888999999999999999999999999998753 33445788999999999999999


Q ss_pred             HHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhC
Q psy904           94 VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH  133 (596)
Q Consensus        94 vk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~  133 (596)
                      .++|++.|+.+...|..|.||-..|-..|..++..||-.+
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999999999999999998888764

>KOG0705|consensus

Probab=98.48  E-value=4.2e-07  Score=92.95  Aligned_cols=88  Identities=23%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCC----CCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCC
Q psy904          251 ALTIAADKGHCRFVELLLSKGAQV----EVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH  326 (596)
Q Consensus       251 ~L~~A~~~~~~~iv~~Ll~~g~di----~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  326 (596)
                      -|..|+...++..+-+||.||...    ..-+.+|.|+||+|+..|++.+.++|+=+|+|+-++|..|.|||.||-..|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            344555555666666666665322    1234455666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhCcC
Q psy904          327 VKAVRWMVNHVA  338 (596)
Q Consensus       327 ~~iv~~Ll~~~~  338 (596)
                      -+++..|+.+|.
T Consensus       707 qec~d~llq~gc  718 (749)
T KOG0705|consen  707 QECIDVLLQYGC  718 (749)
T ss_pred             HHHHHHHHHcCC
Confidence            666666666665

>KOG0506|consensus

Probab=98.48  E-value=1.5e-07  Score=94.05  Aligned_cols=94  Identities=30%  Similarity=0.290  Sum_probs=69.8

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      +.++...+++|++.|++..++.+.-.|.|++..|.+..|+||+|+.-|++++++||++.-.......+.+|.|||.-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34455667788888888888888778888888888888888888888888888888776544444556777788887777


Q ss_pred             CCcHHHHHHHHhCC
Q psy904           88 GGRYEVVELLLTRG  101 (596)
Q Consensus        88 ~g~~eivk~LL~~g  101 (596)
                      .+|.+++++|-+..
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            77777777776643

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.47  E-value=2.3e-07  Score=59.55  Aligned_cols=32  Identities=47%  Similarity=0.764  Sum_probs=26.8

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHCCCCccccC
Q psy904           10 NHDTALTLACAGGHEELVELLLSRGADIEHRD   41 (596)
Q Consensus        10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d   41 (596)
                      +|.||||+||..|+.++|++||+.|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            57888888888888888888888888888765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506|consensus

Probab=98.45  E-value=2.2e-07  Score=92.90  Aligned_cols=92  Identities=23%  Similarity=0.259  Sum_probs=85.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC-CCCcccCCCCCCCHHHHHHHcC
Q psy904          247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH-GADIDSQDNRKVSCLMAAFRKG  325 (596)
Q Consensus       247 ~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~~~~g~t~L~~A~~~g  325 (596)
                      .+...+.+|+..|++..++-+.=.|.|++..|-+.+|+||+|+..|++++++||+.. +.+++..|..|+|||+-|...+
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            455788999999999999999999999999999999999999999999999999985 8999999999999999999999


Q ss_pred             CHHHHHHHHhCcC
Q psy904          326 HVKAVRWMVNHVA  338 (596)
Q Consensus       326 ~~~iv~~Ll~~~~  338 (596)
                      |.+++++|-+...
T Consensus       585 h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  585 HKEVVKLLEEAQY  597 (622)
T ss_pred             cHHHHHHHHHHhc
Confidence            9999999987654

>KOG3609|consensus

Probab=98.44  E-value=6.6e-07  Score=96.38  Aligned_cols=130  Identities=22%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhcC----CCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc
Q psy904          183 ALTLACFQGRHEVVSLLLDRK----ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK  258 (596)
Q Consensus       183 ~L~~A~~~~~~~ii~~Ll~~g----~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~  258 (596)
                      ....|+..|+...++..++..    .++|..|.-|.++|+.|+.+.+.+++.+|++++..+         ..+|.+|+..
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~---------gdALL~aI~~   98 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE---------GDALLLAIAV   98 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc---------chHHHHHHHH
Confidence            344555555555555555431    234444555555555555555555555555543211         2344455555


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      |..++|++++.+.......        +.               .+......-.-+.|||.+|+..++++|+++|+..|+
T Consensus        99 ~~v~~VE~ll~~~~~~~~~--------~~---------------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYL--------ER---------------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHhcccccchh--------cc---------------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            5555555555442211000        00               000111222345567777777777777777777776


Q ss_pred             CCCCch
Q psy904          339 QFPSDQ  344 (596)
Q Consensus       339 ~~~~~~  344 (596)
                      .++.+.
T Consensus       156 ~i~~PH  161 (822)
T KOG3609|consen  156 CIPIPH  161 (822)
T ss_pred             CCCCCc
Confidence            666553

>KOG2384|consensus

Probab=98.43  E-value=4e-07  Score=80.56  Aligned_cols=92  Identities=20%  Similarity=0.240  Sum_probs=72.4

Q ss_pred             CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCchHHHHH
Q psy904          271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG-ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRY  349 (596)
Q Consensus       271 g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~  349 (596)
                      +.+||.+|..|+|||++|+..|+.+.+.||+.+| +.+..+|..|.+++.+|-+.|+.++|..|.++..+-..+.     
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~-----   76 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM-----   76 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc-----
Confidence            4688999999999999999999999999999999 8999999999999999999999999999998855433221     


Q ss_pred             HhhcCcHHHHHhhhhhhHHH
Q psy904          350 IQTVNDKELLDKCQECSMVI  369 (596)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~i  369 (596)
                        ...+...+..|..|...|
T Consensus        77 --nss~~e~lfyCE~Cd~~i   94 (223)
T KOG2384|consen   77 --NSSRDEALFYCEVCDIYI   94 (223)
T ss_pred             --cCCCCCccchhhhhhhhc
Confidence              122334445566664433

>KOG0705|consensus

Probab=98.42  E-value=6.6e-07  Score=91.57  Aligned_cols=92  Identities=24%  Similarity=0.385  Sum_probs=81.2

Q ss_pred             HHHHHhcCcHHHHHHHHhCCCCCC--CCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904          217 LMEAASGGYVEVGRVLLDKGADVN--APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       217 L~~A~~~g~~~iv~~Ll~~g~~~~--~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~  294 (596)
                      |..|+...++..+.+||.+|....  ....+..|.|+||+||..|++.+.++|+=+|+|+..+|..|+|+|.||-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            666777788888999999986543  333456788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCcc
Q psy904          295 SVVELLCKHGADID  308 (596)
Q Consensus       295 ~iv~~Ll~~gad~~  308 (596)
                      +++..|+++|+..+
T Consensus       708 ec~d~llq~gcp~e  721 (749)
T KOG0705|consen  708 ECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHcCCCcc
Confidence            99999999998654

>KOG0522|consensus

Probab=98.37  E-value=8.2e-07  Score=90.55  Aligned_cols=87  Identities=26%  Similarity=0.284  Sum_probs=51.2

Q ss_pred             HHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHH
Q psy904          216 PLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS  295 (596)
Q Consensus       216 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~  295 (596)
                      |||+++.....+-+..++...+...+...+..|.||||+|+..|+...+..|+.+|+|+..+|+.|++|||.|+..|+-.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            46666665555444433222232233334555666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHH
Q psy904          296 VVELLCK  302 (596)
Q Consensus       296 iv~~Ll~  302 (596)
                      ++..++.
T Consensus       103 ~i~~vlr  109 (560)
T KOG0522|consen  103 IITEVLR  109 (560)
T ss_pred             HHHHHHH
Confidence            6655554

>KOG0521|consensus

Probab=98.33  E-value=5.2e-07  Score=100.05  Aligned_cols=103  Identities=32%  Similarity=0.356  Sum_probs=91.0

Q ss_pred             hCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCC
Q psy904          234 DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNR  313 (596)
Q Consensus       234 ~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~  313 (596)
                      ..+++++....-..|.|+||.|+..+..-++++|+++|+++|..|..|+||||.+...|+...+..|+++|+++++.+..
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~  721 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPD  721 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCcc
Confidence            34555565545567889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhC
Q psy904          314 KVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       314 g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      |.+|+++|....+.+++-+|.-.
T Consensus       722 ~~~~l~~a~~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  722 GKLPLDIAMEAANADIVLLLRLA  744 (785)
T ss_pred             CcchhhHHhhhccccHHHHHhhh
Confidence            99999999888777777665543

>KOG0522|consensus

Probab=98.29  E-value=1.7e-06  Score=88.36  Aligned_cols=89  Identities=24%  Similarity=0.333  Sum_probs=63.6

Q ss_pred             cHHHHHHHcCcHHHHHHHH--HCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCH
Q psy904          250 TALTIAADKGHCRFVELLL--SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV  327 (596)
Q Consensus       250 t~L~~A~~~~~~~iv~~Ll--~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~  327 (596)
                      -|||+++.....+-+..++  +.+..++..|..|.||||+|+..|+...+..|+.+|+++...|..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            4577777766665444322  23456677777788888888888888888888888888888888888888888888877


Q ss_pred             HHHHHHHhCcC
Q psy904          328 KAVRWMVNHVA  338 (596)
Q Consensus       328 ~iv~~Ll~~~~  338 (596)
                      .++.-++.+.-
T Consensus       102 q~i~~vlr~~~  112 (560)
T KOG0522|consen  102 QIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHhH
Confidence            77776666543

>KOG3609|consensus

Probab=98.22  E-value=9.3e-06  Score=87.77  Aligned_cols=127  Identities=28%  Similarity=0.309  Sum_probs=106.0

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHC--C--CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHH
Q psy904            9 SNHDTALTLACAGGHEELVELLLSR--G--ADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSL   84 (596)
Q Consensus         9 ~~g~t~L~~A~~~g~~~ivk~Ll~~--g--~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~   84 (596)
                      +.+.-.+..||..|++-.|+..++.  .  .++|..|.-|.++|+.|+.+.+.+++++|++++...        ..+|.+
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~   94 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLL   94 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHH
Confidence            3445667799999999999999985  2  678999999999999999999999999999987654        369999


Q ss_pred             HHHCCcHHHHHHHHhCCCCcc----------CCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCC
Q psy904           85 ACSGGRYEVVELLLTRGANKE----------HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS  143 (596)
Q Consensus        85 A~~~g~~eivk~LL~~g~~~~----------~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~  143 (596)
                      |+..|...+|+.++.+.....          ..-.-+.|||.+|+..++++|+++|+.+|+.+..+...
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH~~  163 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPHDI  163 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCccc
Confidence            999999999999998743321          12234679999999999999999999999987766544

>PTZ00121 MAEBL; Provisional

Probab=98.19  E-value=0.0001  Score=83.13  Aligned_cols=8  Identities=38%  Similarity=0.651  Sum_probs=3.3

Q ss_pred             CCCCCCCC
Q psy904          536 SGIDANSQ  543 (596)
Q Consensus       536 ~~~~~~~~  543 (596)
                      +|.|+|+.
T Consensus      1860 ~~~~~~~~ 1867 (2084)
T PTZ00121       1860 NGEDGNKE 1867 (2084)
T ss_pred             cccccccc
Confidence            34444443

>KOG0511|consensus

Probab=98.18  E-value=5.7e-06  Score=80.75  Aligned_cols=69  Identities=30%  Similarity=0.406  Sum_probs=40.8

Q ss_pred             HHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHH
Q psy904          251 ALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLM  319 (596)
Q Consensus       251 ~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~  319 (596)
                      -|..||+.|..+.|++|++.|+++|.+|....+||.+|+..||.++|++|+++||--....-.|..++.
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y  107 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY  107 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh
Confidence            355566666666666666666666666666666666666666666666666666544444444544443

>KOG0511|consensus

Probab=98.10  E-value=9.7e-06  Score=79.19  Aligned_cols=73  Identities=29%  Similarity=0.362  Sum_probs=62.7

Q ss_pred             CcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904           12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA   85 (596)
Q Consensus        12 ~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A   85 (596)
                      ..-|..||..|+++.|++|++.|+++|.+|....+||.+|+..||.++|++|+++|+-.... ...|..++.-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rd-tf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRD-TFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCccccc-ccCcchhhhhh
Confidence            55688999999999999999999999999999999999999999999999999999876543 34555554433

>KOG2505|consensus

Probab=98.10  E-value=2.4e-05  Score=79.20  Aligned_cols=63  Identities=16%  Similarity=0.092  Sum_probs=54.2

Q ss_pred             cHHHHHHHHHCCCCCCC------CCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904          260 HCRFVELLLSKGAQVEV------KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF  322 (596)
Q Consensus       260 ~~~iv~~Ll~~g~di~~------~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~  322 (596)
                      -...|++|.+++++.|.      .+..-.|+||||+..|.-.+|.+||+.|+|+...|..|.||+.++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            35688999999877653      2344568999999999999999999999999999999999999876

>KOG4364|consensus

Probab=98.07  E-value=0.00014  Score=76.09  Aligned_cols=6  Identities=33%  Similarity=0.733  Sum_probs=4.0

Q ss_pred             cccccc
Q psy904          573 FPCYWT  578 (596)
Q Consensus       573 ~~~~~~  578 (596)
                      -|-||.
T Consensus       491 RP~YyG  496 (811)
T KOG4364|consen  491 RPGYYG  496 (811)
T ss_pred             CCcccc
Confidence            377875

>KOG0520|consensus

Probab=97.88  E-value=1.7e-05  Score=87.58  Aligned_cols=127  Identities=17%  Similarity=0.177  Sum_probs=99.3

Q ss_pred             ccccCCCChHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-HCCCCCCCCCCCCChH
Q psy904          207 EHRAKTGLTPLMEAASGGYVEVGRVLLDK-GADVNAPPVPSSRDTALTIAADKGHCRFVELLL-SKGAQVEVKNKKGNSP  284 (596)
Q Consensus       207 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll-~~g~di~~~d~~g~Tp  284 (596)
                      ......|.+.+|+++..++.-++..+++- |.....  .+..|...+|.++ .+.+++.-+|+ -+|..++++|..|+||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e--ld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tp  644 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE--LDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTP  644 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh--hcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcc
Confidence            34456788999999999999999999985 433333  5566667777744 45555554444 4789999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHCCCCcc------cCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          285 LWLAANGGHLSVVELLCKHGADID------SQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       285 L~~A~~~g~~~iv~~Ll~~gad~~------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      ||+|+..|+..++..|+..|++..      ...-.|.|+..+|..+|+..+..||-+.
T Consensus       645 L~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  645 LHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             cchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999998876543      3345699999999999999998888654

>KOG2384|consensus

Probab=97.83  E-value=4.1e-05  Score=68.11  Aligned_cols=68  Identities=26%  Similarity=0.381  Sum_probs=50.4

Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCC
Q psy904           34 GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG  101 (596)
Q Consensus        34 g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g  101 (596)
                      +.++|.+|.+|+|+|+.|+..|+.+.+.||+.+|....-..+..+.+++.+|-..|..+++..|.+..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            45677788888888888888888888888888875555555667777777777777777777776653

>KOG0521|consensus

Probab=97.77  E-value=3e-05  Score=86.39  Aligned_cols=89  Identities=34%  Similarity=0.404  Sum_probs=81.1

Q ss_pred             CCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHh
Q psy904          211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN  290 (596)
Q Consensus       211 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~  290 (596)
                      ..|.++||.|+..|..-++.+|+++|+++|.  .+..|++|||.+...|+...+..|+.+|++++..+..|.+||++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~--~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNA--LDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchh--hhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            4678999999999999999999999999888  77899999999999999999999999999999999999999999987


Q ss_pred             cCcHHHHHHHH
Q psy904          291 GGHLSVVELLC  301 (596)
Q Consensus       291 ~g~~~iv~~Ll  301 (596)
                      ..+.+++-+|.
T Consensus       732 ~~~~d~~~l~~  742 (785)
T KOG0521|consen  732 AANADIVLLLR  742 (785)
T ss_pred             hccccHHHHHh
Confidence            76666665553

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=97.56  E-value=0.0013  Score=75.16  Aligned_cols=6  Identities=0%  Similarity=-0.059  Sum_probs=2.3

Q ss_pred             HHHHHh
Q psy904           94 VELLLT   99 (596)
Q Consensus        94 vk~LL~   99 (596)
                      +.+|..
T Consensus       131 LaYLHs  136 (1021)
T PTZ00266        131 LAYCHN  136 (1021)
T ss_pred             HHHHHh
Confidence            334433

>KOG0520|consensus

Probab=97.56  E-value=0.0001  Score=81.75  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=87.2

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHH
Q psy904           37 IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLS  116 (596)
Q Consensus        37 i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~  116 (596)
                      +......|++.+|+++..++.-++..+++--.......+..+...+|+++..|.--.+..++-.|..++++|..|+||||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            34445567788888888888877777777522222333455667777754444333333444557777888888888888


Q ss_pred             HHHhcCCHHHHHHHHhCCCCcc----ccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904          117 LAASGGYVNIIKLLLTHGAEIN----SRTGSKLGISPLMLAAMNGHTAAVKLLLDM  168 (596)
Q Consensus       117 ~A~~~g~~eiv~~Ll~~g~~~~----~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~  168 (596)
                      +|+..|+..++..|+..|+...    .......|.|+..+|..+|+..+.-+|-+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            8888888888888876655432    222334478888888888888887777664

>KOG2505|consensus

Probab=97.30  E-value=0.0026  Score=64.94  Aligned_cols=67  Identities=24%  Similarity=0.239  Sum_probs=57.0

Q ss_pred             cCcHHHHHHHHhCCCCCCCCCCC----CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy904          223 GGYVEVGRVLLDKGADVNAPPVP----SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA  289 (596)
Q Consensus       223 ~g~~~iv~~Ll~~g~~~~~~~~~----~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~  289 (596)
                      ..-...+.+|.+++.+.|....+    ....|+||+|+..|...+|.+||+.|+|+...|..|.||.+++.
T Consensus       401 ~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  401 KPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            34477889999998887654332    34569999999999999999999999999999999999999886

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.95  E-value=0.0077  Score=53.93  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=26.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Q psy904          150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLL  200 (596)
Q Consensus       150 L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll  200 (596)
                      |..|+..|-+.++.-.+.+|.+++.       ++|..|+.+++..++.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~-------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI-------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH-------HHHHHHHHhhHHHHHHHhh
Confidence            4556666666666666666665543       4566666666666666654

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.84  E-value=0.0087  Score=53.61  Aligned_cols=44  Identities=30%  Similarity=0.322  Sum_probs=27.1

Q ss_pred             HHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy904          285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV  334 (596)
Q Consensus       285 L~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  334 (596)
                      |..|+..|-+..|--.+.+|.+++.      ++|..|+..+|..|+.+++
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhh
Confidence            5566666666666666666655543      5666666666666666655

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=96.61  E-value=0.0033  Score=37.65  Aligned_cols=27  Identities=59%  Similarity=0.920  Sum_probs=15.6

Q ss_pred             CChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904          281 GNSPLWLAANGGHLSVVELLCKHGADI  307 (596)
Q Consensus       281 g~TpL~~A~~~g~~~iv~~Ll~~gad~  307 (596)
                      |.||||+|+..++.+++++|+.+|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455666666666666666666555543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.51  E-value=0.0043  Score=37.13  Aligned_cols=27  Identities=52%  Similarity=0.741  Sum_probs=17.7

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904           11 HDTALTLACAGGHEELVELLLSRGADI   37 (596)
Q Consensus        11 g~t~L~~A~~~g~~~ivk~Ll~~g~~i   37 (596)
                      |.|+||+|+..|+.+++++|+..|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            556666666666666666666666544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.49  E-value=0.023  Score=52.49  Aligned_cols=113  Identities=20%  Similarity=0.182  Sum_probs=53.0

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCC----CCCCcHHHHHHH-
Q psy904          183 ALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP----SSRDTALTIAAD-  257 (596)
Q Consensus       183 ~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~----~~g~t~L~~A~~-  257 (596)
                      .|.-|+...+.+-+.-++...       ....++|.+++.++..+++-+|+.+-   +....+    ..+..-+.++.. 
T Consensus       156 sledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~f---~ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSKF---NFTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhhc---ceecchhhhcCcchhhHHHHHhh
Confidence            445555555555555554321       12235566666666666666666541   110000    001111111111 


Q ss_pred             -cCcHHHHHHHHHCC-CCCCC---CCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          258 -KGHCRFVELLLSKG-AQVEV---KNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       258 -~~~~~iv~~Ll~~g-~di~~---~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                       ..+..++++++++| +++|.   +-+.|.|.|.-|+.+++.+|+.+||.+||
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence             12345566666665 45543   23455566666666666666666666655

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.47  E-value=0.027  Score=52.03  Aligned_cols=115  Identities=16%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             HHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC----CCCChHHHHHHh-
Q psy904          216 PLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN----KKGNSPLWLAAN-  290 (596)
Q Consensus       216 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d----~~g~TpL~~A~~-  290 (596)
                      .|-.|+...+++.+.-++..-         ....++|.+++..+.-+++-+|+++- .+...|    ..+.--+.|+.+ 
T Consensus       156 sledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhh
Confidence            367788888888777776432         23458899999999999999999861 111111    123334555554 


Q ss_pred             -cCcHHHHHHHHHCC-CCcc---cCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904          291 -GGHLSVVELLCKHG-ADID---SQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF  340 (596)
Q Consensus       291 -~g~~~iv~~Ll~~g-ad~~---~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  340 (596)
                       ..+..+++++|.+| +++|   .+-+.|.|-|+.|+++++.+++.+||.+|+..
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence             44678999999998 5666   34578999999999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.86  E-value=0.14  Score=60.19  Aligned_cols=298  Identities=11%  Similarity=0.074  Sum_probs=135.3

Q ss_pred             HHHHHHhcCcHHHHHH----HHHCCCCccccCCCCCcHHHHHHHcCCHHH----HHHHHhCCCCccccccCCCChHHHHH
Q psy904           14 ALTLACAGGHEELVEL----LLSRGADIEHRDKKGFTPLILAATAGHDKV----VDILLNHKADMEAQSERTKDTPLSLA   85 (596)
Q Consensus        14 ~L~~A~~~g~~~ivk~----Ll~~g~~i~~~d~~g~t~L~~A~~~g~~ei----v~~Ll~~~~~~~~~~~~~~~t~L~~A   85 (596)
                      .|..++..|+++....    +...|..++...  ..+.|...+..|.++.    +..+...|..++..   ...+.+...
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t--ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv---TynaLI~gy  517 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKL--YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH---TFGALIDGC  517 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHH
Confidence            4444555565443333    333455444322  2245555666666653    33333444433322   122445555


Q ss_pred             HHCCcHH----HHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHh------CCCCccccCCCCCCCcHHHHHHH
Q psy904           86 CSGGRYE----VVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT------HGAEINSRTGSKLGISPLMLAAM  155 (596)
Q Consensus        86 ~~~g~~e----ivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~------~g~~~~~~~~~~~g~t~L~~A~~  155 (596)
                      +..|+++    ++..+...|..++...  ..+.|...+..|.++-...++.      .|..++...    ..+.+...+.
T Consensus       518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vT--YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT----ynaLI~ay~k  591 (1060)
T PLN03218        518 ARAGQVAKAFGAYGIMRSKNVKPDRVV--FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT----VGALMKACAN  591 (1060)
T ss_pred             HHCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH----HHHHHHHHHH
Confidence            6666654    3334444555444221  1244555556666654333332      122222111    1234444556


Q ss_pred             cCCHHHH----HHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHH----HHHhcCCCcccccCCCChHHHHHHhcCcHH
Q psy904          156 NGHTAAV----KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVS----LLLDRKANVEHRAKTGLTPLMEAASGGYVE  227 (596)
Q Consensus       156 ~g~~eiv----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~----~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  227 (596)
                      .|+++-.    +.+...+..++..   ..++.+...+..|+.+.+.    .+...|..++...  -.+.+...+..|..+
T Consensus       592 ~G~ldeA~elf~~M~e~gi~p~~~---tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T--ynsLI~a~~k~G~~e  666 (1060)
T PLN03218        592 AGQVDRAKEVYQMIHEYNIKGTPE---VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF--FSALVDVAGHAGDLD  666 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhCCCHH
Confidence            6776533    3333444333221   2235566666677655333    3334455544221  123444455566654


Q ss_pred             ----HHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHH----HHHHHHCCCCCCCCCCCCChHHHHHHhcCcHH----
Q psy904          228 ----VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF----VELLLSKGAQVEVKNKKGNSPLWLAANGGHLS----  295 (596)
Q Consensus       228 ----iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~i----v~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~----  295 (596)
                          ++..+...|..++.    ....+.++..+..|.++-    ++.+...|..++...  -++.+...+..|.++    
T Consensus       667 eA~~l~~eM~k~G~~pd~----~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt--yN~LI~gy~k~G~~eeAle  740 (1060)
T PLN03218        667 KAFEILQDARKQGIKLGT----VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST--MNALITALCEGNQLPKALE  740 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHHHH
Confidence                34444455554443    123455666667777653    333344555554321  122334445666655    


Q ss_pred             HHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy904          296 VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN  335 (596)
Q Consensus       296 iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  335 (596)
                      ++..+...|..++....  .+.+......|.++....++.
T Consensus       741 lf~eM~~~Gi~Pd~~Ty--~sLL~a~~k~G~le~A~~l~~  778 (1060)
T PLN03218        741 VLSEMKRLGLCPNTITY--SILLVASERKDDADVGLDLLS  778 (1060)
T ss_pred             HHHHHHHcCCCCCHHHH--HHHHHHHHHCCCHHHHHHHHH
Confidence            33334445666654322  123344455666655544443

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=95.86  E-value=0.33  Score=51.35  Aligned_cols=6  Identities=17%  Similarity=0.319  Sum_probs=2.2

Q ss_pred             CCCCCh
Q psy904          278 NKKGNS  283 (596)
Q Consensus       278 d~~g~T  283 (596)
                      +.-|.|
T Consensus       149 eWpG~t  154 (489)
T PF05262_consen  149 EWPGKT  154 (489)
T ss_pred             cCCCCc
Confidence            333333

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.52  E-value=0.15  Score=59.88  Aligned_cols=276  Identities=9%  Similarity=0.023  Sum_probs=149.2

Q ss_pred             CcHHHHHHhcCcHHHH----HHHHHCCCCccccCCCCCcHHHHHHHcCCHH----HHHHHHhCCCCccccccCCCChHHH
Q psy904           12 DTALTLACAGGHEELV----ELLLSRGADIEHRDKKGFTPLILAATAGHDK----VVDILLNHKADMEAQSERTKDTPLS   83 (596)
Q Consensus        12 ~t~L~~A~~~g~~~iv----k~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~e----iv~~Ll~~~~~~~~~~~~~~~t~L~   83 (596)
                      ++.+...+..|.++.+    +.+...|..+|...  ..+.|...+..|..+    ++..+...|..++..   ...+.|.
T Consensus       476 nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT--ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v---TYnsLI~  550 (1060)
T PLN03218        476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT--FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV---VFNALIS  550 (1060)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH---HHHHHHH
Confidence            3556677788887654    44445576665442  235677777888875    344555566554432   1235666


Q ss_pred             HHHHCCcHHHHHHHHh------CCCCccCCCCCCCcHHHHHHhcCCHH----HHHHHHhCCCCccccCCCCCCCcHHHHH
Q psy904           84 LACSGGRYEVVELLLT------RGANKEHRNVSDYTPLSLAASGGYVN----IIKLLLTHGAEINSRTGSKLGISPLMLA  153 (596)
Q Consensus        84 ~A~~~g~~eivk~LL~------~g~~~~~~d~~g~t~L~~A~~~g~~e----iv~~Ll~~g~~~~~~~~~~~g~t~L~~A  153 (596)
                      ..+..|.++-...++.      .|..++..  ...+.+...+..|.++    +++.+...|..++...    ..+.+...
T Consensus       551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~v--TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t----ynsLI~ay  624 (1060)
T PLN03218        551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHI--TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV----YTIAVNSC  624 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhcCCCCCcHH--HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH----HHHHHHHH
Confidence            6777888765544433      23333321  1235566677788876    4444445554433222    12445556


Q ss_pred             HHcCCHH----HHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHH----HHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          154 AMNGHTA----AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEV----VSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       154 ~~~g~~e----iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~i----i~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      +..|+++    ++..+...|..++..   ...+.+..++..|+.+-    +..+...|..++..  ...+.+...+..|.
T Consensus       625 ~k~G~~deAl~lf~eM~~~Gv~PD~~---TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~--tynsLI~ay~k~G~  699 (1060)
T PLN03218        625 SQKGDWDFALSIYDDMKKKGVKPDEV---FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV--SYSSLMGACSNAKN  699 (1060)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhCCC
Confidence            6778765    444445556555432   22356666777777654    44444456555432  22345556667777


Q ss_pred             HHHHHHH----HhCCCCCCCCCCCCCCCcHHHHHHHcCcHH----HHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHH
Q psy904          226 VEVGRVL----LDKGADVNAPPVPSSRDTALTIAADKGHCR----FVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVV  297 (596)
Q Consensus       226 ~~iv~~L----l~~g~~~~~~~~~~~g~t~L~~A~~~~~~~----iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv  297 (596)
                      ++-...+    ...|..++.    ...++.+...+..|.++    ++..+...|..++...  -.+.|...+..|.++.+
T Consensus       700 ~eeA~~lf~eM~~~g~~Pdv----vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T--y~sLL~a~~k~G~le~A  773 (1060)
T PLN03218        700 WKKALELYEDIKSIKLRPTV----STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT--YSILLVASERKDDADVG  773 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHCCCHHHH
Confidence            6644433    344544432    12335555666777765    4444555676665432  12345555667776654


Q ss_pred             H----HHHHCCCCccc
Q psy904          298 E----LLCKHGADIDS  309 (596)
Q Consensus       298 ~----~Ll~~gad~~~  309 (596)
                      .    .++..|..++.
T Consensus       774 ~~l~~~M~k~Gi~pd~  789 (1060)
T PLN03218        774 LDLLSQAKEDGIKPNL  789 (1060)
T ss_pred             HHHHHHHHHcCCCCCH
Confidence            4    44455766653

>KOG2072|consensus

Probab=95.30  E-value=6.1  Score=43.84  Aligned_cols=8  Identities=13%  Similarity=0.306  Sum_probs=3.7

Q ss_pred             HHHHHHHH
Q psy904           25 ELVELLLS   32 (596)
Q Consensus        25 ~ivk~Ll~   32 (596)
                      .+|+||.+
T Consensus       150 PWlkFLWe  157 (988)
T KOG2072|consen  150 PWLKFLWE  157 (988)
T ss_pred             HHHHHHHH
Confidence            34455544

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=95.04  E-value=1.8  Score=45.96  Aligned_cols=13  Identities=8%  Similarity=-0.038  Sum_probs=5.1

Q ss_pred             CCCcccCCCCCCC
Q psy904          304 GADIDSQDNRKVS  316 (596)
Q Consensus       304 gad~~~~~~~g~t  316 (596)
                      |.+....+.-|.|
T Consensus       142 Gls~~y~eWpG~t  154 (489)
T PF05262_consen  142 GLSRRYSEWPGKT  154 (489)
T ss_pred             ccccccccCCCCc
Confidence            3333333444433

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.98  E-value=3.3  Score=47.20  Aligned_cols=17  Identities=12%  Similarity=-0.023  Sum_probs=8.9

Q ss_pred             HHHHhcCcHHHHHHHHH
Q psy904          286 WLAANGGHLSVVELLCK  302 (596)
Q Consensus       286 ~~A~~~g~~~iv~~Ll~  302 (596)
                      ..+...|+++....+.+
T Consensus       502 ~a~~~~g~~~~a~~~~~  518 (697)
T PLN03081        502 TACRIHKNLELGRLAAE  518 (697)
T ss_pred             HHHHHcCCcHHHHHHHH
Confidence            33345666665555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.62  E-value=9.6  Score=43.39  Aligned_cols=87  Identities=11%  Similarity=0.064  Sum_probs=44.2

Q ss_pred             cHHHHHHhcCcHHH----HHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHC
Q psy904           13 TALTLACAGGHEEL----VELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG   88 (596)
Q Consensus        13 t~L~~A~~~g~~~i----vk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   88 (596)
                      +.|..++..++.+.    ...++..|..++..  ...+.|...+..|.++-+..+++.-...+..   .-.+.+...+..
T Consensus       128 ~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~--~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~---t~n~li~~~~~~  202 (697)
T PLN03081        128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQY--MMNRVLLMHVKCGMLIDARRLFDEMPERNLA---SWGTIIGGLVDA  202 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHhcCCCHHHHHHHHhcCCCCCee---eHHHHHHHHHHC
Confidence            34445555666543    34444456665533  2335566667777777777666655443221   122344444556


Q ss_pred             CcHH----HHHHHHhCCCCc
Q psy904           89 GRYE----VVELLLTRGANK  104 (596)
Q Consensus        89 g~~e----ivk~LL~~g~~~  104 (596)
                      |+++    ++..++..|..+
T Consensus       203 g~~~~A~~lf~~M~~~g~~p  222 (697)
T PLN03081        203 GNYREAFALFREMWEDGSDA  222 (697)
T ss_pred             cCHHHHHHHHHHHHHhCCCC
Confidence            6643    333344445444

>PLN03077 Protein ECB2; Provisional

Probab=92.97  E-value=22  Score=41.58  Aligned_cols=144  Identities=10%  Similarity=0.013  Sum_probs=68.5

Q ss_pred             cHHHHHHhcCcHHHHHHHH----HCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-hHHHHHHH
Q psy904           13 TALTLACAGGHEELVELLL----SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD-TPLSLACS   87 (596)
Q Consensus        13 t~L~~A~~~g~~~ivk~Ll----~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~-t~L~~A~~   87 (596)
                      +.|..++..|+++..+.++    ..|..++..  -..+.+...+..|.++-...+++.-...+.    ..+ +.+...+.
T Consensus       293 ~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~--~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~----~s~n~li~~~~~  366 (857)
T PLN03077        293 SVISACELLGDERLGREMHGYVVKTGFAVDVS--VCNSLIQMYLSLGSWGEAEKVFSRMETKDA----VSWTAMISGYEK  366 (857)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhCCccchH--HHHHHHHHHHhcCCHHHHHHHHhhCCCCCe----eeHHHHHHHHHh
Confidence            4455556677665544444    456555433  234566777777877776666665332221    122 33444455


Q ss_pred             CCcHH----HHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHH----HHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCH
Q psy904           88 GGRYE----VVELLLTRGANKEHRNVSDYTPLSLAASGGYVN----IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT  159 (596)
Q Consensus        88 ~g~~e----ivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~e----iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~  159 (596)
                      .|.++    ++..+...|..++...  -.+.|...+..|.++    +...++..|...+...    ..+.+...+..|++
T Consensus       367 ~g~~~~A~~lf~~M~~~g~~Pd~~t--~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~----~n~Li~~y~k~g~~  440 (857)
T PLN03077        367 NGLPDKALETYALMEQDNVSPDEIT--IASVLSACACLGDLDVGVKLHELAERKGLISYVVV----ANALIEMYSKCKCI  440 (857)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCcee--HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHH----HHHHHHHHHHcCCH
Confidence            66644    3333344555444321  123344444455544    3333344444333222    11233344555665


Q ss_pred             HHHHHHHhc
Q psy904          160 AAVKLLLDM  168 (596)
Q Consensus       160 eiv~~Ll~~  168 (596)
                      +-...+++.
T Consensus       441 ~~A~~vf~~  449 (857)
T PLN03077        441 DKALEVFHN  449 (857)
T ss_pred             HHHHHHHHh
Confidence            555544443

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.78  E-value=0.16  Score=39.32  Aligned_cols=47  Identities=21%  Similarity=0.364  Sum_probs=24.3

Q ss_pred             cHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q psy904           13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH   66 (596)
Q Consensus        13 t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~   66 (596)
                      ..|..|+.+|+.++++.++..+ .++      ...|..|+...+.++++||+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3455555555555555555433 111      1345555555555555555554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.61  E-value=0.36  Score=37.40  Aligned_cols=46  Identities=20%  Similarity=0.312  Sum_probs=25.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhC
Q psy904           47 PLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR  100 (596)
Q Consensus        47 ~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~  100 (596)
                      .|.+|+.+|+.++++.+++.+. ++       ...|..|+...+.++++||++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~-~~-------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNK-PD-------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhc-cH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4566666666666666654431 11       1356666666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03077 Protein ECB2; Provisional

Probab=92.10  E-value=8.7  Score=44.93  Aligned_cols=20  Identities=15%  Similarity=0.240  Sum_probs=9.5

Q ss_pred             HHHHHHhcCCHHHHHHHHhC
Q psy904          114 PLSLAASGGYVNIIKLLLTH  133 (596)
Q Consensus       114 ~L~~A~~~g~~eiv~~Ll~~  133 (596)
                      .+...+..|.++-+..+++.
T Consensus       228 Li~~y~k~g~~~~A~~lf~~  247 (857)
T PLN03077        228 LITMYVKCGDVVSARLVFDR  247 (857)
T ss_pred             HHHHHhcCCCHHHHHHHHhc
Confidence            33444445555554444444

>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function

Probab=91.57  E-value=0.92  Score=46.05  Aligned_cols=18  Identities=17%  Similarity=0.178  Sum_probs=8.0

Q ss_pred             HHHHHHhcCcHHHHHHHH
Q psy904          284 PLWLAANGGHLSVVELLC  301 (596)
Q Consensus       284 pL~~A~~~g~~~iv~~Ll  301 (596)
                      |-.+++.....++...|+
T Consensus       160 p~~~~vmsEs~e~~~~il  177 (321)
T PF07946_consen  160 PESLVVMSESNEVTDFIL  177 (321)
T ss_pred             CcceEEEEccHhHHHHHh
Confidence            334444444444444443

One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.

>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function

Probab=89.45  E-value=1.2  Score=45.12  Aligned_cols=21  Identities=5%  Similarity=0.145  Sum_probs=11.2

Q ss_pred             CcHHHHHHHcCcHHHHHHHHH
Q psy904          249 DTALTIAADKGHCRFVELLLS  269 (596)
Q Consensus       249 ~t~L~~A~~~~~~~iv~~Ll~  269 (596)
                      ..|-.+++.....++...|+.
T Consensus       158 ~Lp~~~~vmsEs~e~~~~il~  178 (321)
T PF07946_consen  158 KLPESLVVMSESNEVTDFILT  178 (321)
T ss_pred             CCCcceEEEEccHhHHHHHhC
Confidence            344445555555555555544

One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=88.56  E-value=3.9  Score=41.52  Aligned_cols=125  Identities=10%  Similarity=-0.043  Sum_probs=65.2

Q ss_pred             CccCCCCCcHHHHHHhcCcHHHHHHHHHC---CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC
Q psy904            5 SETESNHDTALTLACAGGHEELVELLLSR---GADIEHRDKKGFTPLILAATAGHDKVVDILLNH--KADMEAQSERTKD   79 (596)
Q Consensus         5 ~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~---g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~   79 (596)
                      ...+.+|.-.|..+...++.+....+++.   .+.--..|.+|...+......+..+....++..  |.-.....+..|.
T Consensus        15 l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~   94 (322)
T cd07920          15 FAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGC   94 (322)
T ss_pred             ccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhH
Confidence            45677888888888888888888777764   111223456677777777777766544444432  1111222334455


Q ss_pred             hHHHHHHHCCcHHHHHHHHhC---CCCccCCCCCCCcHHHHHHhcCCHHHHHH
Q psy904           80 TPLSLACSGGRYEVVELLLTR---GANKEHRNVSDYTPLSLAASGGYVNIIKL  129 (596)
Q Consensus        80 t~L~~A~~~g~~eivk~LL~~---g~~~~~~d~~g~t~L~~A~~~g~~eiv~~  129 (596)
                      -.+..+...+..+....++..   ....-..|..|...+..+...+..+....
T Consensus        95 ~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~  147 (322)
T cd07920          95 RVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQF  147 (322)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHH
Confidence            555555554443333333221   01111234455555555555544443333

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal

Probab=81.62  E-value=6.4  Score=30.13  Aligned_cols=14  Identities=43%  Similarity=0.669  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHHH
Q psy904          464 ESKRAAQARKRERK  477 (596)
Q Consensus       464 e~~~~~~~~~~~~~  477 (596)
                      ++++++.|+++.++
T Consensus        45 eEkKkAKAeqrA~E   58 (86)
T PF15437_consen   45 EEKKKAKAEQRARE   58 (86)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	596
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-38
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-14
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-24
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-20
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-23
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-21
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-22
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-20
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-20
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-22
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-22
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-22
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-20
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-17
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		4e-22
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-12
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		7e-07
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-21
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-17
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-21
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-18
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-21
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-19
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-17
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-21
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-20
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-18
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-21
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-20
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-18
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-16
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-21
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-20
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-20
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-21
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-20
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-19
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-19
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-20
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-20
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		4e-20
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-17
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-20
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-16
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-20
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-16
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		6e-20
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-20
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-19
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-15
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-20
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-15
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-19
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-19
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-16
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-19
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-19
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-19
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		9e-18
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-17
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-14
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-16
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-19
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-16
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-19
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-14
1uoh_A	226	Human Gankyrin Length = 226		2e-18
1uoh_A	226	Human Gankyrin Length = 226		9e-16
1uoh_A	226	Human Gankyrin Length = 226		3e-13
1uoh_A	226	Human Gankyrin Length = 226		3e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-18
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-15
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-13
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-18
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-15
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		9e-13
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-18
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		7e-15
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-17
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-09
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-16
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		4e-15
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-15
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		6e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-14
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-13
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-14
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-14
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-08
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		6e-14
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-12
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-13
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-07
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		4e-13
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		3e-11
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		5e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		7e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-13
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		8e-13
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		4e-08
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		9e-13
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-12
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-11
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-12
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-11
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-12
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-11
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-12
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-09
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-12
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-11
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-09
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-12
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-12
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		2e-09
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		5e-12
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-11
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-11
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-09
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-10
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		3e-10
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		4e-10
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-06
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		6e-10
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-09
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		4e-08
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-09
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		1e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		4e-09
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		8e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		7e-08
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-08
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-07
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		2e-07
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-08
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		7e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		9e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-06
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-06
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		9e-07
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		1e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		1e-06
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		2e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-05
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-06
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		8e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-06
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-06
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		9e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-06
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		3e-06
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-04
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		4e-06
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-05
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-05
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-05
3deo_A	183	Structural Basis For Specific Substrate Recognition		6e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		7e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		9e-05
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		3e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		3e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		6e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		7e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/361 (34%), Positives = 177/361 (49%), Gaps = 18/361 (4%)
Query: 12  DTALTLACAG--GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
           D    L CA   GH  +V+LLL   A+       G TPL +AA  GH + V  LL  +A 
Sbjct: 79  DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 138
Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
               +++   TPL +A   G+  V ELLL R A+      +  TPL +A     ++I+KL
Sbjct: 139 QACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
           LL  G   +S   +  G +PL +AA        + LL  G   NA+      T L LA  
Sbjct: 198 LLPRGGSPHSPAWN--GYTPLHIAAKQNQVEVARSLLQYGGSANAE-SVQGVTPLHLAAQ 254
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSR- 248
           +G  E+V+LLL ++AN     K+GLTPL   A  G+V V  VL+  G  V+A    ++R 
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA----TTRM 310
Query: 249 -DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307
             T L +A+  G+ + V+ LL   A V  K K G SPL  AA  GH  +V LL K+GA  
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 308 DSQDNRKVSCLMAAFRKGHVKA--VRWMVNHVAQF--PSDQEMTRYIQTVNDKELLDKCQ 363
           +   +   + L  A R G++    V  +V     F   SD+    + +TV+  E+LD  +
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD--EILDVSE 428
Query: 364 E 364
           +
Sbjct: 429 D 429

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/188 (32%), Positives = 91/188 (48%), Gaps = 3/188 (1%)
Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206
           ++PL +A+  GH   VK LL  G+  N        T L +A   G  EV   LL  KA V
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
             +AK   TPL  AA  G+  + ++LL+  A+ N     ++  T L IAA +GH   V  
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETVLA 131
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           LL K A      KKG +PL +AA  G + V ELL +  A  ++     ++ L  A    +
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 191
Query: 327 VKAVRWMV 334
           +  V+ ++
Sbjct: 192 LDIVKLLL 199

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 107/315 (33%), Positives = 151/315 (47%), Gaps = 30/315 (9%)
Query: 8   ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
           E   D  L  A +G  E+L+ LL     +    D +  TPL LAA     ++V +LL H 
Sbjct: 22  EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 68  ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNII 127
           AD+ A+ ++    PL  ACS G YEV ELLL  GA     ++  +TPL  AAS   V + 
Sbjct: 82  ADVHAK-DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 128 KLLLTHGAE---INSRTGSKLGISP----------------LMLAAMNGHTAAVKLLLDM 168
            LLL+HGA+   +N    S + ++P                L+ AA     A VK  L +
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 169 GSDINAQIETNRNTALTLAC---FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225
              IN +   +  TAL  A       R +V  LLL + ANV  + K  +TPL  AA   +
Sbjct: 201 -EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259
Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
            +V  VL   GA +NA  + S   TAL  AA  GH +   LLLS G+   + + +G    
Sbjct: 260 NDVMEVLHKHGAKMNA--LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG---- 313
Query: 286 WLAANGGHLSVVELL 300
           + AA  G+ +V ++L
Sbjct: 314 FTAAQMGNEAVQQIL 328

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 133/284 (46%), Gaps = 25/284 (8%)
Query: 75  ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134
           E  KD  L  A SG   +++ LL     N    +    TPL LAA    V I++LLL HG
Sbjct: 22  EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE 194
           A+++++   K G+ PL  A   GH    +LLL  G+ +NA ++  + T L  A  + R E
Sbjct: 82  ADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFTPLHEAASKNRVE 138
Query: 195 VVSLLLDRKA-----NVEHRAKTGLTPLMEAASGGYVEV-GRVLLDKGADVNAPPV---- 244
           V SLLL   A     N   ++   + P  E       E  G  LL    + +   V    
Sbjct: 139 VCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL 198
Query: 245 ---------PSSRDTALTIAADKGHCR---FVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
                    P S +TAL  A    H +     ELLL KGA V  KNK   +PL +AA   
Sbjct: 199 ALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERA 258
Query: 293 HLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           H  V+E+L KHGA +++ D+   + L  A   GH++  R ++++
Sbjct: 259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY 302

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  E    LL    +VN       + T L +AA     R V+LLL  GA V  
Sbjct: 28  LLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           K+K G  PL  A + GH  V ELL KHGA +++ D  + + L  A  K  V+    +++H
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH 146
Query: 337 VA 338
            A
Sbjct: 147 GA 148

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+  +DK G+TPL LAA  GH ++V++LL   AD+ A+ ++ 
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKD 67
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
             TPL LA   G  E+VE+LL  GA+   ++   YTPL LAA  G++ I+++LL  GA++
Sbjct: 68  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           N++   K G +P  LA   GH    ++L
Sbjct: 128 NAQ--DKFGKTPFDLAIREGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/140 (43%), Positives = 82/140 (58%), Gaps = 2/140 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V  + K G TPL  AA  G++E+  VLL  GADVNA     
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AA +GH   VE+LL  GA V  K+K G +PL LAA  GHL +VE+L K GAD
Sbjct: 69  Y--TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 307 IDSQDNRKVSCLMAAFRKGH 326
           +++QD    +    A R+GH
Sbjct: 127 VNAQDKFGKTPFDLAIREGH 146

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+  +DK G+TPL LAA  GH ++V++LL   AD+ A+ ++ 
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKD 67
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
             TPL LA   G  E+VE+LL  GA+   ++   YTPL LAA  G++ I+++LL  GA++
Sbjct: 68  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           N++   K G +P  LA  NG+    ++L
Sbjct: 128 NAQ--DKFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + AD+ A+ ++   TPL LA   G  E+VE+LL  GA+   +
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           +   YTPL LAA  G++ I+++LL  GA++N++   K G +PL LAA  GH   V++LL 
Sbjct: 65  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLK 122
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D+NAQ +  + T   LA   G  ++  +L
Sbjct: 123 AGADVNAQDKFGK-TPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V  + K G TPL  AA  G++E+  VLL  GADVNA     
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AA +GH   VE+LL  GA V  K+K G +PL LAA  GHL +VE+L K GAD
Sbjct: 69  Y--TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 307 IDSQD 311
           +++QD
Sbjct: 127 VNAQD 131

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 33/280 (11%)
Query: 48  LILAATAGHD-KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEH 106
           L++ A    D  +V  LL   A++  Q E    TPL  A    R ++VELLL  GA+   
Sbjct: 28  LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 107 RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
           R  +  TP  LAA  G V ++KL L+ GA++N       G +  M AA+ G   A+K L 
Sbjct: 88  RKKNGATPFILAAIAGSVKLLKLFLSKGADVNE--CDFYGFTAFMEAAVYGKVKALKFLY 145
Query: 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
             G+++N + +T                        K + E   K G T LM+AA  G+V
Sbjct: 146 KRGANVNLRRKT------------------------KEDQERLRKGGATALMDAAEKGHV 181
Query: 227 EVGRVLLDK-GADVNAPPVPSSRDT---ALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
           EV ++LLD+ GADVNA      R+    AL  + D        LLL  GA V V+ ++G 
Sbjct: 182 EVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 283 SPLWLAANGGHLSVVE-LLCKHGADIDSQDNRKVSCLMAA 321
           +PL LA    HL +V+ LL +   +I+  D+   + L+ A
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 280

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 15  LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
           L  A   G+++ V+ LL  GAD+   D  G TPL LAA  GH +VV +LL+  AD  A+ 
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 75  ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134
              K TPL LA   G  EVV+LLL++GA+   ++    TPL LAA  G+  ++KLLL+ G
Sbjct: 68  SDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126
Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
           A+ N  T    G +PL LA  +G+   VKLL   G
Sbjct: 127 ADPN--TSDSDGRTPLDLAREHGNEEVVKLLEKQG 159

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 86/152 (56%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           LI AA  G+   V  LL + AD+ A     K TPL LA   G  EVV+LLL++GA+   +
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           +    TPL LAA  G+  ++KLLL+ GA+ N++     G +PL LAA NGH   VKLLL 
Sbjct: 67  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD--GKTPLHLAAENGHKEVVKLLLS 124
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D N      R T L LA   G  EVV LL
Sbjct: 125 QGADPNTSDSDGR-TPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/156 (42%), Positives = 90/156 (57%), Gaps = 3/156 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           L+ AA NG+   VK LL+ G+D+NA  +++  T L LA   G  EVV LLL + A+   +
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
              G TPL  AA  G+ EV ++LL +GAD NA    S   T L +AA+ GH   V+LLLS
Sbjct: 67  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK--DSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
           +GA     +  G +PL LA   G+  VV+LL K G 
Sbjct: 125 QGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
           L  A   G  + V  LL+  A+V      G TPL  AA  G+ EV ++LL +GAD NA  
Sbjct: 8   LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
             S   T L +AA+ GH   V+LLLS+GA    K+  G +PL LAA  GH  VV+LL   
Sbjct: 68  --SDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
           GAD ++ D+   + L  A   G+ + V+ +
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 33/280 (11%)
Query: 48  LILAATAGHD-KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEH 106
           L++ A    D  +V  LL   A++  Q E    TPL  A    R ++VELLL  GA+   
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 107 RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
           R  +  TP  LAA  G V ++KL L+ GA++N       G +  M AA+ G   A+K L 
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE--CDFYGFTAFMEAAVYGKVKALKFLY 125
Query: 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
             G+++N + +T                        K + E   K G T LM+AA  G+V
Sbjct: 126 KRGANVNLRRKT------------------------KEDQERLRKGGATALMDAAEKGHV 161
Query: 227 EVGRVLLDK-GADVNAPPVPSSRDT---ALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
           EV ++LLD+ GADVNA      R+    AL  + D        LLL  GA V V+ ++G 
Sbjct: 162 EVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 283 SPLWLAANGGHLSVVE-LLCKHGADIDSQDNRKVSCLMAA 321
           +PL LA    HL +V+ LL +   +I+  D+   + L+ A
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 15/224 (6%)
Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTA 183
           V++++ LL  GA +N +   + G +PL  A        V+LLL  G+D   + + N  T 
Sbjct: 18  VDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATP 75
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN--- 240
             LA   G  +++ L L + A+V      G T  MEAA  G V+  + L  +GA+VN   
Sbjct: 76  FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135
Query: 241 -----APPVPSSRDTALTIAADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLAANGGHL 294
                   +     TAL  AA+KGH   +++LL + GA V   +  G + L  A      
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195
Query: 295 SVVE----LLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
           S VE    LL  HGAD++ +  R  + L+ A  K H+  V+ ++
Sbjct: 196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L++A     V++ + LL+ GA+VN         T L  A        VELLL  GA   +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM--- 333
           + K G +P  LAA  G + +++L    GAD++  D    +  M A   G VKA++++   
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 334 ---VNHVAQFPSDQEMTR 348
              VN   +   DQE  R
Sbjct: 128 GANVNLRRKTKEDQERLR 145

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 4/163 (2%)
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
           S+LG   L+ AA NG+   VK L++ G+D+NA     R T L  A  +G  E+V LL+ +
Sbjct: 2   SELG-KRLIEAAENGNKDRVKDLIENGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISK 59
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
            A+V  +   G TPL  AA  G+ E+ ++L+ KGADVNA    S   T L  AA +GH  
Sbjct: 60  GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK--DSDGRTPLHYAAKEGHKE 117
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
            V+LL+SKGA V   +  G +PL LA   G+  +V+LL K G 
Sbjct: 118 IVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
           L  A   G  + V  L++  A+V      G TPL  AA  G+ E+ ++L+ KGADVNA  
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
             S   T L  AA +GH   V+LL+SKGA V  K+  G +PL  AA  GH  +V+LL   
Sbjct: 68  --SDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 125
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
           GAD+++ D+   + L  A   G+ + V+ +
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 93/163 (57%), Gaps = 4/163 (2%)
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
           S+LG   L+ AA NG+   VK L++ G+D+NA     R T L  A   G  EVV LL+ +
Sbjct: 2   SELG-KRLIEAAENGNKDRVKDLIENGADVNASDSDGR-TPLHHAAENGHKEVVKLLISK 59
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
            A+V  +   G TPL  AA  G+ EV ++L+ KGADVNA    S   T L  AA+ GH  
Sbjct: 60  GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGHKE 117
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
            V+LL+SKGA V   +  G +PL LA   G+  VV+LL K G 
Sbjct: 118 VVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/150 (39%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
           L  A   G  + V  L++  A+V      G TPL  AA  G+ EV ++L+ KGADVNA  
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
             S   T L  AA+ GH   V+LL+SKGA V  K+  G +PL  AA  GH  VV+LL   
Sbjct: 68  --SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
           GAD+++ D+   + L  A   G+ + V+ +
Sbjct: 126 GADVNTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+   D  G TPL LAA  GH ++V++LL H AD+ A +++ 
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNA-ADKM 79
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
            DTPL LA   G  E+VE+LL  GA+    +   +TPL LAA  G++ I+++LL +GA++
Sbjct: 80  GDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           N++   K G +   ++  NG+    ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V     +G TPL  AA  G++E+  VLL  GADVNA     
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD--K 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
             DT L +AA  GH   VE+LL  GA V   +  G +PL LAA+ GHL +VE+L K+GAD
Sbjct: 79  MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA     S  T L +AA KGH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAED--DSGKTPLHLAAIKGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +K G++PL LAA  GHL +VE+L K+GAD+++ D    + L  A   GH++ V  ++ +
Sbjct: 76  ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+   D  G+TPL LAA+ GH ++V++LL + AD+ A S+ T
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA-SDLT 79
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
             TPL LA + G  E+VE+LL  GA+    +   +TPL LAA  G++ I+++LL HGA++
Sbjct: 80  GITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           N++   K G +   ++  NG+    ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V      G TPL  AAS G++E+  VLL  GADVNA  +  
Sbjct: 21  AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AA  GH   VE+LL  GA V   +  G++PL LAA  GHL +VE+L KHGAD
Sbjct: 81  I--TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA    +   T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNA--TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G +PL LAA  GHL +VE+L KHGAD+++ DN   + L  A + GH++ V  ++ H
Sbjct: 76  SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 3/148 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+   D  G TPL LAA +GH ++V++LL H AD++A S+  
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDA-SDVF 79
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
             TPL LA   G  E+VE+LL  GA+    +    TPL LAA  GY+ I+++LL HGA++
Sbjct: 80  GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           N++   K G +   ++  NG+    ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + AD+ A ++ T  TPL LA   G  E+VE+LL  GA+ +  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           +V  YTPL LAA  G++ I+++LL +GA++N+      G++PL LAA  G+   V++LL 
Sbjct: 77  DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSD--GMTPLHLAAKWGYLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D+NAQ +  + TA  ++   G  ++  +L
Sbjct: 135 HGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V     TG TPL  AA  G++E+  VLL  GADV+A  V  
Sbjct: 21  AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AA  GH   VE+LL  GA V   +  G +PL LAA  G+L +VE+L KHGAD
Sbjct: 81  Y--TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA    ++  T L +AA  GH   VE+LL  GA V+ 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAAD--NTGTTPLHLAAYSGHLEIVEVLLKHGADVDA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G +PL LAA  GHL +VE+L K+GAD+++ D+  ++ L  A + G+++ V  ++ H
Sbjct: 76  SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 92/148 (62%), Gaps = 3/148 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+  +DK G+TPL LAA  GH ++V++LL   AD+ A+ ++ 
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKD 79
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
             TPL LA   G  E+VE+LL  GA+   ++   YTPL LAA  G++ I+++LL  GA++
Sbjct: 80  GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           N++   K G +   ++  NG+    ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + AD+ A+ ++   TPL LA   G  E+VE+LL  GA+   +
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           +   YTPL LAA  G++ I+++LL  GA++N++   K G +PL LAA  GH   V++LL 
Sbjct: 77  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--DKDGYTPLHLAAREGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D+NAQ +  + TA  ++   G  ++  +L
Sbjct: 135 AGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V  + K G TPL  AA  G++E+  VLL  GADVNA     
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AA +GH   VE+LL  GA V  K+K G +PL LAA  GHL +VE+L K GAD
Sbjct: 81  Y--TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 98.6 bits (244), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 90/150 (60%), Gaps = 7/150 (4%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+   D +G TPL LAA  GH ++V++LL H AD+ A   R 
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA---RD 77
Query: 78  KD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
            D  TPL LA   G  E+VE+LL  GA+   ++    TPL LAA  G++ I+++LL HGA
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 136 EINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           ++N++   K G +   ++  NG+    ++L
Sbjct: 138 DVNAQ--DKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + AD+ A  ++   TPL LA   G  E+VE+LL  GA+   R
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGS-TPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           +   +TPL LAA  G++ I+++LL +GA++N++     G++PL LAA  GH   V++LL 
Sbjct: 77  DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQ--DAYGLTPLHLAADRGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D+NAQ +  + TA  ++   G  ++  +L
Sbjct: 135 HGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
           G+  +   GS LG   L+ AA  G    V++L+  G+D+NA  +   +T L LA + G  
Sbjct: 3   GSHHHHHHGSDLG-KKLLEAARAGQDDEVRILMANGADVNAH-DDQGSTPLHLAAWIGHP 60
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
           E+V +LL   A+V  R   G TPL  AA  G++E+  VLL  GADVNA        T L 
Sbjct: 61  EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGL--TPLH 118
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
           +AAD+GH   VE+LL  GA V  ++K G +   ++ + G+  + E+L K
Sbjct: 119 LAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V      G TPL  AA  G+ E+  VLL  GADVNA     
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AAD GH   VE+LL  GA V  ++  G +PL LAA+ GHL +VE+L KHGAD
Sbjct: 81  W--TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA     S  T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGS--TPLHLAAWIGHPEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           ++  G +PL LAA+ GHL +VE+L K+GAD+++QD   ++ L  A  +GH++ V  ++ H
Sbjct: 76  RDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V      G TPL  AA  G++E+  VLL  GADVNA    S
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADD--S 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AAD+GH   VE+LL  GA V   +  G +PL LAAN GHL +VE+L KHGAD
Sbjct: 79  LGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/132 (38%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA        T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNASDHVGW--TPLHLAAYFGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G +PL LAA+ GHL VVE+L K+GAD+++ D+   + L  A   GH++ V  ++ H
Sbjct: 76  DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           TPL LA   G  EVV+LLL  GA+   ++ +  TPL LAA  G++ ++KLLL  GA++N+
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           +   K G +PL LAA NGH   VKLLL+ G+D+NA+ + N  T L LA   G  EVV LL
Sbjct: 64  K--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLL 120
Query: 200 LDRKA 204
           L+  A
Sbjct: 121 LEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           N  T L LA   G  EVV LLL+  A+V  + K G TPL  AA  G++EV ++LL+ GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
           VNA     +  T L +AA  GH   V+LLL  GA V  K+K G +PL LAA  GHL VV+
Sbjct: 61  VNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118
Query: 299 LLCKHGA 305
           LL + GA
Sbjct: 119 LLLEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 77/122 (63%), Gaps = 2/122 (1%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G TPL  AA  G++EV ++LL+ GADVNA     +  T L +AA  GH   V+LLL  GA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
            V  K+K G +PL LAA  GHL VV+LL + GAD++++D    + L  A R GH++ V+ 
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Query: 333 MV 334
           ++
Sbjct: 120 LL 121

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/125 (46%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   GR + V +L+   A+V      G TPL  AA  G++E+  VLL  GADVNA     
Sbjct: 21  AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           S  T L +AA  GH   VE+LL  GA V  K+  G +PL LAAN GHL +VE+L K+GAD
Sbjct: 81  S--TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA  V     T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G++PL LAA+ GHL +VE+L K+GAD++++D+  ++ L  A  +GH++ V  ++ +
Sbjct: 76  YDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/156 (42%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           L+ AA NG+   VK LL+ G+D NA     R T L  A   G  E+V LLL + A+   +
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
              G TPL  AA  G+ E+ ++LL KGAD NA    S   T L  AA+ GH   V+LLLS
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA--KDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
           KGA     +  G +PL LA   G+  +V+LL K G 
Sbjct: 125 KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
           L  A   G  + V  LL+  A+       G TPL  AA  G+ E+ ++LL KGAD NA  
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA-- 65
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
             S   T L  AA+ GH   V+LLLSKGA    K+  G +PL  AA  GH  +V+LL   
Sbjct: 66  KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 125
Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
           GAD ++ D+   + L  A   G+ + V+ +
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V     +GLTPL  AA+ G++E+  VLL  GADVNA  +  
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           S  T L +AA  GH   VE+LL  GA V   +  G++PL LAA  GHL +VE+L KHGAD
Sbjct: 81  S--TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA    +S  T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G++PL LAA  GHL +VE+L KHGAD+++ D    + L  A   GH++ V  ++ H
Sbjct: 76  IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V     +GLTPL  AA+ G++E+  VLL  GADVNA  +  
Sbjct: 21  AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           S  T L +AA  GH   VE+LL  GA V   +  G++PL LAA  GHL +VE+L KHGAD
Sbjct: 81  S--TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA    +S  T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G++PL LAA  GHL +VE+L KHGAD+++ D    + L  A   GH++ V  ++ H
Sbjct: 76  IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 88/140 (62%), Gaps = 3/140 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+   D  G TPL LAA +GH ++V++LL H AD++A ++  
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA-ADVY 79
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
             TPL LA   G  E+VE+LL  GA+    +++  TPL LAA  G++ I+++LL +GA++
Sbjct: 80  GFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNG 157
           N++   K G +   ++  NG
Sbjct: 140 NAQ--DKFGKTAFDISIDNG 157

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V     TGLTPL  AA  G++E+  VLL  GADV+A  V  
Sbjct: 21  AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AA  GH   VE+LL  GA V   +  G++PL LAA+ GHL +VE+L K+GAD
Sbjct: 81  F--TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA  V ++  T L +AA  GH   VE+LL  GA V+ 
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNA--VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G +PL LAA  GHL +VE+L K+GAD+++ D    + L  A  +GH++ V  ++ +
Sbjct: 76  ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+       G TPL  AA+ G++E+  VLL  GADVNA  V +
Sbjct: 9   AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA--VDT 66
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           +  T L +AA  GH   VE+LL  GA V  K+  G +PL+LAA  GHL +VE+L KHGAD
Sbjct: 67  NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 307 IDSQD 311
           +++QD
Sbjct: 127 VNAQD 131

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GAD NA        T L +AA  GH   VE+LL  GA V  
Sbjct: 6   LLEAARAGQDDEVRILMANGADANA--YDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA 63
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G +PL LAA+ GHL +VE+L K+GAD++++D   ++ L  A   GH++ V  ++ H
Sbjct: 64  VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 124 GADVNAQDKFGK 135

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 92/152 (60%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + AD+ A+ +   DTPL LA   G  E+VE+LL  GA+    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           + S  TPL LAA  G++ I+++LL +GA++N+     +G +PL LAA  GH   V++LL 
Sbjct: 77  DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNAD--DTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D+NAQ +  + TA  ++   G  ++  +L
Sbjct: 135 YGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V      G TPL  AA  G++E+  VLL  GADVNA     
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           S  T L +AA +GH   VE+LL  GA V   +  G++PL LAA+ GHL +VE+L K+GAD
Sbjct: 81  S--TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 75/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA    +  DT L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAED--TYGDTPLHLAARVGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G++PL LAA  GHL +VE+L K+GAD+++ D    + L  A   GH++ V  ++ +
Sbjct: 76  LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 94/152 (61%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + AD+ A  +    TPL LA + G+ E+VE+LL  GA+    
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGL-TPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           + +  TPL LAA  G++ I+++LL HGA++N+    + G +PL LAA++G    V++LL 
Sbjct: 69  DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY--DRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D+NAQ +    TA  ++  QG+ ++  +L
Sbjct: 127 HGADVNAQ-DALGLTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 80/140 (57%), Gaps = 2/140 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V      GLTPL  AA+ G +E+  VLL  GADVNA    S
Sbjct: 13  AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD--S 70
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           +  T L +AA  GH   VE+LL  GA V   ++ G +PL LAA  G L +VE+L KHGAD
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Query: 307 IDSQDNRKVSCLMAAFRKGH 326
           +++QD   ++    +  +G 
Sbjct: 131 VNAQDALGLTAFDISINQGQ 150

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 89/148 (60%), Gaps = 3/148 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+   D  G TPL L    GH +++++LL + AD+ A S+++
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA-SDKS 79
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
             TPL LA   G  E+VE+LL  GA+    +   YTPL LAA  G++ I+++LL +GA++
Sbjct: 80  GWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           N++   K G +   ++  NG+    ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + AD+ A ++    TPL L  + G  E++E+LL   A+    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNA-NDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           + S +TPL LAA  G++ I+++LL +GA++N+      G +PL LAA +GH   V++LL 
Sbjct: 77  DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM--DYQGYTPLHLAAEDGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D+NAQ +  + TA  ++   G  ++  +L
Sbjct: 135 YGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V      G+TPL    + G++E+  VLL   ADVNA     
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD--K 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           S  T L +AA +GH   VE+LL  GA V   + +G +PL LAA  GHL +VE+L K+GAD
Sbjct: 79  SGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA        T L +  + GH   +E+LL   A V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDWFGI--TPLHLVVNNGHLEIIEVLLKYAADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +K G +PL LAA  GHL +VE+L K+GAD+++ D +  + L  A   GH++ V  ++ +
Sbjct: 76  SDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 88/148 (59%), Gaps = 3/148 (2%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G ++ V +L++ GAD+   D  G TPL LAA  GH ++V++LL + AD+ A     
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
             TPL LA   G  E+VE+LL  GA+   ++   +TPL LAA  G++ I+++LL +GA++
Sbjct: 81  A-TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           N++   K G +   ++  NG+    ++L
Sbjct: 140 NAQ--DKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + AD+ A ++    TPL LA   G  E+VE+LL  GA+    
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNA-TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           +    TPL LAA  G++ I+++LL HGA++N++     G +PL LAA +GH   V++LL 
Sbjct: 77  DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE--GFTPLHLAAYDGHLEIVEVLLK 134
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D+NAQ +  + TA  ++   G  ++  +L
Sbjct: 135 YGADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V      G TPL  AA  G++E+  VLL  GADVNA     
Sbjct: 21  AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           +  T L +AAD GH   VE+LL  GA V  K+ +G +PL LAA  GHL +VE+L K+GAD
Sbjct: 81  A--TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA        T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGH--TPLHLAAKTGHLEIVEVLLKYGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G +PL LAA+ GHL +VE+L KHGAD++++D    + L  A   GH++ V  ++ +
Sbjct: 76  WDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   G+ + V +L+   A+V  R  TG TPL  AA  G++E+  VLL  GADVNA    S
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD--S 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L +AA +GH   VE+LL  GA V   +  G +PL LAA  GHL +VE+L K+GAD
Sbjct: 79  LGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA        T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGW--TPLHLAAHFGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           K+  G +PL LAA  GHL +VE+L K+GAD+++ D+   + L  A ++GH++ V  ++ +
Sbjct: 76  KDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           A   GR + V +L+   A+V     +G TPL  AA  G++E+  VLL  GADVNA  V  
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--VDH 78
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           +  T L +AA  GH   VE+LL  GA V   + +G++PL LAA  GHL +VE+L K+GAD
Sbjct: 79  AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 307 IDSQD 311
           +++QD
Sbjct: 139 VNAQD 143

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA    +S  T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAED--ASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  G +PL LAA  GHL +VE+L K+GAD+++ D    + L  A   GH++ V  ++ +
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 136 GADVNAQDKFGK 147

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 5   SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
           + T+ +  TAL  AC+ GH E+VE LL  G  +  +D  G++PL +AA+AG D++V  LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 65  NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
              A + A ++    TPL  A S  R+E+  +LL  GAN + ++  + T +  AA+ G +
Sbjct: 94  GKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
            +I +LL + A  N +     G +PL LA         KLL+  G+ I
Sbjct: 153 KMIHILLYYKASTNIQDTE--GNTPLHLACDEERVEEAKLLVSQGASI 198

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
Query: 83  SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG 142
           +LA SG   E+ E +L   +     +    T L  A S G+  I++ LL  G  +N +  
Sbjct: 12  NLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
           +  G SPL +AA  G    VK LL  G+ +NA +  N  T L  A  + RHE+  +LL+ 
Sbjct: 72  A--GWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
            AN + +     T +  AA+ G +++  +LL   A  N     +  +T L +A D+    
Sbjct: 129 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD--TEGNTPLHLACDEERVE 186
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANG 291
             +LL+S+GA + ++NK+  +PL +A  G
Sbjct: 187 EAKLLVSQGASIYIENKEEKTPLQVAKGG 215

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           + L  A   GHT  V+ LL +G  +N + +    + L +A   GR E+V  LL + A V 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
              + G TPL  AAS    E+  +LL+ GA+      P ++D    TA+  AA KG+ + 
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNLKM 154
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
           + +LL   A   +++ +GN+PL LA +   +   +LL   GA I  ++  + + L  A
Sbjct: 155 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA----LTIAADKGHCRFVELLLSK 270
           T L  A S G+ E+   LL  G  VN       +D A    L IAA  G    V+ LL K
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
           GAQV   N+ G +PL  AA+     +  +L + GA+ D++D+ + + +  A  KG++K +
Sbjct: 96  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 331 RWMVNHVA 338
             ++ + A
Sbjct: 156 HILLYYKA 163

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 5   SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
           + T+ +  TAL  AC+ GH E+VE LL  G  +  +D  G++PL +AA+AG D++V  LL
Sbjct: 35  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 65  NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
              A + A ++    TPL  A S  R+E+  +LL  GAN + ++  + T +  AA+ G +
Sbjct: 95  GKGAQVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
            +I +LL + A  N +     G +PL LA         KLL+  G+ I
Sbjct: 154 KMIHILLYYKASTNIQDTE--GNTPLHLACDEERVEEAKLLVSQGASI 199

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 5/209 (2%)
Query: 83  SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG 142
           +LA SG   E+ E +L   +     +    T L  A S G+  I++ LL  G  +N +  
Sbjct: 13  NLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 72
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
           +  G SPL +AA  G    VK LL  G+ +NA +  N  T L  A  + RHE+  +LL+ 
Sbjct: 73  A--GWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 129
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
            AN + +     T +  AA+ G +++  +LL   A  N     +  +T L +A D+    
Sbjct: 130 GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD--TEGNTPLHLACDEERVE 187
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANG 291
             +LL+S+GA + ++NK+  +PL +A  G
Sbjct: 188 EAKLLVSQGASIYIENKEEKTPLQVAKGG 216

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           + L  A   GHT  V+ LL +G  +N + +    + L +A   GR E+V  LL + A V 
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
              + G TPL  AAS    E+  +LL+ GA+      P ++D    TA+  AA KG+ + 
Sbjct: 102 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYEATAMHRAAAKGNLKM 155
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
           + +LL   A   +++ +GN+PL LA +   +   +LL   GA I  ++  + + L  A
Sbjct: 156 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA----LTIAADKGHCRFVELLLSK 270
           T L  A S G+ E+   LL  G  VN       +D A    L IAA  G    V+ LL K
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVN------DKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
           GAQV   N+ G +PL  AA+     +  +L + GA+ D++D+ + + +  A  KG++K +
Sbjct: 97  GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156
Query: 331 RWMVNHVA 338
             ++ + A
Sbjct: 157 HILLYYKA 164

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 3/168 (1%)
Query: 5   SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
           + T+ +  TAL  AC+ GH E+VE LL  G  +  +D  G++PL +AA+AG D++V  LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 65  NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
              A + A ++    TPL  A S  R+E+  +LL  GAN + ++  D T +  AA+ G +
Sbjct: 94  VKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
            ++ +LL + A  N +     G +PL LA         K L+  G+ I
Sbjct: 153 KMVHILLFYKASTNIQDTE--GNTPLHLACDEERVEEAKFLVTQGASI 198

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 5/209 (2%)
Query: 83  SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG 142
           +LA SG   E+ E +L   +     +    T L  A S G+  I++ LL  G  +N +  
Sbjct: 12  NLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
           +  G SPL +AA  G    VK LL  G+ +NA +  N  T L  A  + RHE+  +LL+ 
Sbjct: 72  A--GWSPLHIAASAGRDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
            AN + +     T +  AA+ G +++  +LL   A  N     +  +T L +A D+    
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEERVE 186
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANG 291
             + L+++GA + ++NK+  +PL +A  G
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAKGG 215

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           + L  A   GHT  V+ LL +G  +N + +    + L +A   GR E+V  LL + A+V 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGRDEIVKALLVKGAHVN 100
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
              + G TPL  AAS    E+  +LL+ GA+      P ++D    TA+  AA KG+ + 
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKM 154
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
           V +LL   A   +++ +GN+PL LA +   +   + L   GA I  ++  + + L  A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 3/168 (1%)
Query: 5   SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
           + T+ +  TAL  AC+ GH E+VE LL  G  +  +D  G++PL +AA+AG D++V  LL
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 65  NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
              A + A ++    TPL  A S  R+E+  +LL  GAN + ++  D T +  AA+ G +
Sbjct: 94  VKGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
            ++ +LL + A  N +     G +PL LA         K L+  G+ I
Sbjct: 153 KMVHILLFYKASTNIQDTE--GNTPLHLACDEERVEEAKFLVTQGASI 198

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 5/209 (2%)
Query: 83  SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG 142
           +LA SG   E+ E +L   +     +    T L  A S G+  I++ LL  G  +N +  
Sbjct: 12  NLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD 71
Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
           +  G SPL +AA  G    VK LL  G+ +NA +  N  T L  A  + RHE+  +LL+ 
Sbjct: 72  A--GWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCR 262
            AN + +     T +  AA+ G +++  +LL   A  N     +  +T L +A D+    
Sbjct: 129 GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEERVE 186
Query: 263 FVELLLSKGAQVEVKNKKGNSPLWLAANG 291
             + L+++GA + ++NK+  +PL +A  G
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAKGG 215

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 11/178 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           + L  A   GHT  V+ LL +G  +N + +    + L +A   G  E+V  LL + A+V 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
              + G TPL  AAS    E+  +LL+ GA+      P ++D    TA+  AA KG+ + 
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGNLKM 154
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
           V +LL   A   +++ +GN+PL LA +   +   + L   GA I  ++  + + L  A
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 8/204 (3%)
Query: 105 EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKL 164
           EH+N    +PL  AA  G+V+I  +L+  GA I+  T S+   +PLM AA N H  AVK 
Sbjct: 7   EHQN--KRSPLHAAAEAGHVDICHMLVQAGANID--TCSEDQRTPLMEAAENNHLEAVKY 62
Query: 165 LLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASG 223
           L+  G+ ++ + +   +T L LA  +G +EVV  LL   + +V  +   G TP++ A   
Sbjct: 63  LIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
            +V++ ++LL KG+D+N     +  +  L  AA  G     E+LL+    +   N  G+S
Sbjct: 122 KHVDLVKLLLSKGSDINIRD--NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS 179
Query: 284 PLWLAANGGHLSVVELLCKHGADI 307
           PL +AA       V L     +D+
Sbjct: 180 PLHIAARENRYDCVVLFLSRDSDV 203

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 5/131 (3%)
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
           +EH+ K   +PL  AA  G+V++  +L+  GA+++       + T L  AA+  H   V+
Sbjct: 6   MEHQNKR--SPLHAAAEAGHVDICHMLVQAGANIDT--CSEDQRTPLMEAAENNHLEAVK 61
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA-DIDSQDNRKVSCLMAAFRK 324
            L+  GA V+ K+ +G++ L LAA  GH  VV+ L  +G  D++ QD+   + ++ A   
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 325 GHVKAVRWMVN 335
            HV  V+ +++
Sbjct: 122 KHVDLVKLLLS 132

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 82/147 (55%), Gaps = 7/147 (4%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
           G  + S+ GS    SPL +AA++G    + LLL  G++  A+   ++   L LAC QG  
Sbjct: 78  GVNVTSQDGS----SPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQGHF 132
Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
           +VV  LLD  A    +  +G TPL+ A SGG+ E+  +LL  GA +NA    +  +TAL 
Sbjct: 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS--NNKGNTALH 190
Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKK 280
            A  + H   VELLL  GA V+V NK+
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQVLNKR 217

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
           ++ G +PL  AA  G  ++  +LL  GA  NA    + +   L +A  +GH + V+ LL 
Sbjct: 83  SQDGSSPLHVAALHGRADLIPLLLKHGA--NAGARNADQAVPLHLACQQGHFQVVKCLLD 140
Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKA 329
             A+   K+  GN+PL  A +GGH  +V LL +HGA I++ +N+  + L  A  + HV  
Sbjct: 141 SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFV 200
Query: 330 VRWMVNHVA 338
           V  ++ H A
Sbjct: 201 VELLLLHGA 209

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA     +  T L +AAD  H   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGN--TPLHLAADYDHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
            +  G++PL LAA  GHL +VE+L KHGAD+++QD
Sbjct: 76  HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQD 110

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
           AA  G    V +L++ GA V   ++KGN+PL LAA+  HL +VE+L KHGAD+++ DN  
Sbjct: 21  AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
            + L  A   GH++ V  ++ H A   +  +  +
Sbjct: 81  STPLHLAALFGHLEIVEVLLKHGADVNAQDKFGK 114

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELL 267
           +K G TPL  AA  G+ E  + LL KGADVNA     S+D  T L +AA  GH   V+LL
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA----RSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 268 LSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
           L+KGA V  ++K GN+P  LA   GH  +V+LL   GAD++++
Sbjct: 62  LAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
           +T L  AA  GH   V+ LLSKGA V  ++K GN+PL LAA  GH  +V+LL   GAD++
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 309 SQDNRKVSCLMAAFRKGHVKAVR 331
           ++     +    A + GH + V+
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVK 92

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 48  LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHR 107
           L+ AA AG D  V IL+ + A     ++    +PL LA   G +   E+LL  G +++ R
Sbjct: 6   LLEAARAGQDDEVRILMANGAPF--TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
              D TPL +AAS G+ NI+++LL HGA++N++    L ++ L  A  + H   V+LL+ 
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAK--DMLKMTALHWATEHNHQEVVELLIK 121
Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            G+D++ Q +  + TA  ++   G  ++  +L
Sbjct: 122 YGADVHTQSKFCK-TAFDISIDNGNEDLAEIL 152

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GA      + +S    L +AA  GH    E+LL  G   + 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTTDWLGTS---PLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           + K   +PL +AA+ GH ++VE+L KHGAD++++D  K++ L  A    H + V  ++ +
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY 122
Query: 337 VAQFPSDQEMTR 348
            A   +  +  +
Sbjct: 123 GADVHTQSKFCK 134

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/93 (50%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G TPL  AA  G++EV ++LL+ GADVNA     +  T L +AA  GH   V+LLL  GA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
            V  K+K G +PL LAA  GHL VV+LL + GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           T L +AA  GH   V+LLL  GA V  K+K G +PL LAA  GHL VV+LL + GAD+++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMV 334
           +D    + L  A R GH++ V+ ++
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA  +     T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNA--LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           ++  G +PL LAA  GHL +VE+L KHGAD+++QD
Sbjct: 76  EDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQD 110

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
           AA  G    V +L++ GA V   ++ G +PL LAA  GHL +VE+L K+GAD++++DN  
Sbjct: 21  AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
           ++ L  A  +GH++ V  ++ H A   +  +  +
Sbjct: 81  ITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGK 114

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 39  HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
           +RD    TPL++A   G +  +D L+ +   +E + +    T L  A    R  + E LL
Sbjct: 30  YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLL 88
Query: 99  TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
           ++G+N   ++ S  TPL  +   GY  +   LL HGA +N R     G +PL++A+  G 
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE--GETPLIVASKYGR 146
Query: 159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           +  VK LL++G+DI+A+  T   TA   A   GR EV+ + 
Sbjct: 147 SEIVKKLLELGADISARDLTGL-TAEASARIFGRQEVIKIF 186

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 2/130 (1%)
Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           T L +AC  G    +  L++    +E +   G T L+ A     + +   LL KG++VN 
Sbjct: 37  TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLC 301
                S  T L  +   G+      LL  GA V  +N +G +PL +A+  G   +V+ L 
Sbjct: 97  KDF--SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Query: 302 KHGADIDSQD 311
           + GADI ++D
Sbjct: 155 ELGADISARD 164

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 5/167 (2%)
Query: 9   SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
           ++H + L  AC GGH   V++LL  GA +        TPL  A  +G    V++LL H A
Sbjct: 34  ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
            ++ +S+    +P+  A   G  E V  L+  G N +H+     TPL LA        +K
Sbjct: 94  SVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 151
Query: 129 LLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
            LL  GA++N   G     SPL   A         LL+D G+D  A+
Sbjct: 152 KLLESGADVNQGKGQD---SPLHAVARTASEELACLLMDFGADTQAK 195

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 7/208 (3%)
Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           +P+  A   G    +  L+++G           +PL  A  GG+++ +K+LL HGA++N 
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            T      +PL  A ++G    V LLL  G+ +  Q E++  + +  A  +G  E V+ L
Sbjct: 65  VTAD--WHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGHVECVNSL 120
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
           +    N++H+     TPL  A         + LL+ GADVN       +D+ L   A   
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ---GKGQDSPLHAVARTA 177
Query: 260 HCRFVELLLSKGAQVEVKNKKGNSPLWL 287
                 LL+  GA  + KN +G  P+ L
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVEL 205

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           SP+  AA++GH  +++ L+  G  +N  I  +  + L  AC  G    V +LL   A V 
Sbjct: 5   SPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI--AADKGHCRFVE 265
                  TPL  A   G  +   +LL  GA V     P S D A  I  AA +GH   V 
Sbjct: 64  GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PES-DLASPIHEAARRGHVECVN 118
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
            L++ G  ++ K     +PL+LA      + V+ L + GAD++
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 161

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EA   G  +  R+L+  GADVNA  +  +  T L +AA +GH   VE+LL  GA V  
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           ++  G +PL LAA  GHL +VE+L ++GAD+++QD
Sbjct: 76  RDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
           V +L++ GA V   +  G +PL LAA  GHL +VE+L KHGAD++++D    + L  A  
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 324 KGHVKAVRWMVNHVAQFPSDQEMTR 348
            GH++ V  ++ + A   +  +  +
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGK 114

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EA   G  +  R+L+  GADVNA  +  +  T L +AA +GH   VE+LL  GA V  
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
            +  G +PL LAA  GHL +VE+L ++GAD+++QD
Sbjct: 76  SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 49/85 (57%)
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
           V +L++ GA V   +  G +PL LAA  GHL +VE+L KHGAD+++ D+   + L  A  
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 324 KGHVKAVRWMVNHVAQFPSDQEMTR 348
            GH++ V  ++ + A   +  +  +
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGK 114

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EA   G  +  R+L+  GADVNA  +  +  T L +AA +GH   VE+LL  GA V  
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNA--MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
            +  G +PL LAA  GHL +VE+L ++GAD+++QD
Sbjct: 76  SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
           V +L++ GA V   +  G +PL LAA  GHL +VE+L KHGAD+++ D    + L  A  
Sbjct: 30  VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 324 KGHVKAVRWMVNHVAQFPSDQEMTR 348
            GH++ V  ++ + A   +  +  +
Sbjct: 90  VGHLEIVEVLLEYGADVNAQDKFGK 114

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 13/217 (5%)
Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           D  S+    H+ A+      GH+  +  L+S+G  +        +PL  A   GH   V 
Sbjct: 55  DAVSDWSPMHEAAIH-----GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK 109
Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDY-TPLSLAAS 120
           ILL H A +   +     TPL  AC  G ++ V LLL  GA+ +    SD  +P+  AA 
Sbjct: 110 ILLKHGAQVNGVTADWH-TPLFNACVSGSWDCVNLLLQHGASVQPE--SDLASPIHEAAR 166
Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
            G+V  +  L+ +G  I+ +  S LG +PL LA  N   A VK LL+ G+D+N      +
Sbjct: 167 RGHVECVNSLIAYGGNIDHKI-SHLG-TPLYLACENQQRACVKKLLESGADVNQG--KGQ 222
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPL 217
           ++ L         E+  LL+D  A+ + +   G  P+
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPV 259

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
           +PL  A  GG+++ +K+LL HGA++N  T      +PL  A ++G    V LLL  G+ +
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQHGASV 151
Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
             Q E++  + +  A  +G  E V+ L+    N++H+     TPL  A         + L
Sbjct: 152 --QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209
Query: 233 LDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWL 287
           L+ GADVN       +D+ L             LL+  GA  + KN +G  P+ L
Sbjct: 210 LESGADVNQ---GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 9/178 (5%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           SP+  AA++GH  +++ L+  G  +N  I  +  + L  AC  G    V +LL   A V 
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI--AADKGHCRFVE 265
                  TPL  A   G  +   +LL  GA V     P S D A  I  AA +GH   V 
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ----PES-DLASPIHEAARRGHVECVN 174
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
            L++ G  ++ K     +PL+LA      + V+ L + GAD++ Q   + S L A  R
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVR 231

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L   GADVNA        T L +AA  GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGH--TPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
               G +PL LAA   HL +VE+L KHGAD+++QD
Sbjct: 76  TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQD 110

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
           AA  G    V +L + GA V   +  G++PL LAA  GHL +VE+L K+GAD+++  N  
Sbjct: 21  AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
            + L  A    H++ V  ++ H A   +  +  +
Sbjct: 81  RTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGK 114

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA        T L +AA   H   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGL--TPLHLAAMNDHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
            +  G +PL L A  GHL +VE+L KHGAD+++QD
Sbjct: 76  IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQD 110

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
           AA  G    V +L++ GA V  ++K G +PL LAA   HL +VE+L K+GAD+++ D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
            + L      GH++ V  ++ H A   +  +  +
Sbjct: 81  ETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGK 114

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G  +  R+L+  GADVNA        T L +A   GH   VE+LL  GA V  
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGL--TPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
            +  G +PL LAA  GHL + E+L KHGAD+++QD
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
           AA  G    V +L++ GA V  K++ G +PL+LA   GHL +VE+L K+GAD+++ D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 315 VSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTR 348
            + L  A   GH++    ++ H A   +  +  +
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGK 114

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 4/205 (1%)
Query: 85  ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSK 144
           A   G YE    L+  G +    +  + T L  AA    ++++K  ++ GA I  + G  
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA-IVDQLGGD 74
Query: 145 LGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
           L  +PL  A   GH + V  L+  G+D  + I+    + + LA   G   +V+ L+ +  
Sbjct: 75  LNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 205 NVEHRAKTGLTPLMEAASGGY-VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF 263
           +V+   + G+TPLM AA   + V+  R+LL     VN       ++TAL  A   G+   
Sbjct: 134 DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-KYHKNTALHWAVLAGNTTV 192
Query: 264 VELLLSKGAQVEVKNKKGNSPLWLA 288
           + LLL  GA V+ +N KG S L LA
Sbjct: 193 ISLLLEAGANVDAQNIKGESALDLA 217

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
           Y+  G ++   G D+N+ P        L  A  +GH   V  L+  GA   + + +G S 
Sbjct: 61  YISKGAIVDQLGGDLNSTP--------LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC 112
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLM-AAFRKGHVKAVR 331
           + LAA  GH S+V  L   G D+D  D   ++ LM AA+R   V   R
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 37  IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
           I H D++GFTPL+ AA  G   VV+ LL + AD +    + +++ LSLACS G  ++V++
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKM 85
Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
           LL  G +    + +  TPL  A  G +V  +K+LL  GA+    T S  G + + LA   
Sbjct: 86  LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS--GYNSMDLAVAL 143
Query: 157 GHTAAVKLL 165
           G+ +  +++
Sbjct: 144 GYRSVQQVI 152

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
           QG    ++  ++++  + H  + G TPLM AA+ G + V   LL  GAD     +   R+
Sbjct: 11  QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRE 68
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           +AL++A  KG+   V++LL  G  V   +  G +PL  A +G H+  V++L + GAD
Sbjct: 69  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 125

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           T L  AA  G    VE LL  GA  ++  K   S L LA + G+  +V++L   G D++ 
Sbjct: 36  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 95
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMV 334
            D    + L+ A    HVK V+ ++
Sbjct: 96  YDWNGGTPLLYAVHGNHVKCVKMLL 120

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 37  IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
           I H D++GFTPL+ AA  G   VV+ LL + AD +    + +++ LSLACS G  ++V++
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKM 103
Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
           LL  G +    + +  TPL  A  G +V  +K+LL  GA+    T S  G + + LA   
Sbjct: 104 LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS--GYNSMDLAVAL 161
Query: 157 GHTAAVKLL 165
           G+ +  +++
Sbjct: 162 GYRSVQQVI 170

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
           QG    ++  ++++  + H  + G TPLM AA+ G + V   LL  GAD     +   R+
Sbjct: 29  QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRE 86
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           +AL++A  KG+   V++LL  G  V   +  G +PL  A +G H+  V++L + GAD
Sbjct: 87  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 143

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           T L  AA  G    VE LL  GA  ++  K   S L LA + G+  +V++L   G D++ 
Sbjct: 54  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 113
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMV 334
            D    + L+ A    HVK V+ ++
Sbjct: 114 YDWNGGTPLLYAVHGNHVKCVKMLL 138

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 37  IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
           I H D++GFTPL+ AA  G   VV+ LL + AD +    + +++ LSLACS G  ++V++
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKM 87
Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
           LL  G +    + +  TPL  A  G +V  +K+LL  GA+    T S  G + + LA   
Sbjct: 88  LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS--GYNSMDLAVAL 145
Query: 157 GHTAAVKLL 165
           G+ +  +++
Sbjct: 146 GYRSVQQVI 154

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
           QG    ++  ++++  + H  + G TPLM AA+ G + V   LL  GAD     +   R+
Sbjct: 13  QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRE 70
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           +AL++A  KG+   V++LL  G  V   +  G +PL  A +G H+  V++L + GAD
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD 127

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           T L  AA  G    VE LL  GA  ++  K   S L LA + G+  +V++L   G D++ 
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMV 334
            D    + L+ A    HVK V+ ++
Sbjct: 98  YDWNGGTPLLYAVHGNHVKCVKMLL 122

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G TPL+ A++ G +E  R LL+ GAD +   +   R++AL++A+  G+   V LLL +  
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
            + + +  G +PL  A +G H+  VE L   GAD+ ++ +   + +  A   G+ K  + 
Sbjct: 94  DINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153
Query: 333 MVNHVAQF------PSDQE 345
           + NH+ +       P+D E
Sbjct: 154 IENHILKLFQSNLVPADPE 172

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
           + E    T L  A       +VE LL  GAD+  +DK G  PL  A + GH +V ++L+ 
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           H A +   ++  K TPL  A + G+YE+ +LLL  GA+   +N    TPL L   G
Sbjct: 97  HGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           L+ AA  G    VK L  + S     IE  ++T L  A    R  VV  LL   A+V  +
Sbjct: 12  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 71
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
            K GL PL  A S G+ EV  +L+  GA VN   +   + T L  AA KG     +LLL 
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQ 129
Query: 270 KGAQVEVKNKKGNSPLWLAANG 291
            GA    KN+ GN+PL L  +G
Sbjct: 130 HGADPTKKNRDGNTPLDLVKDG 151

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G VE  + L    + VN   +   + T L  AA       VE LL  GA V  
Sbjct: 12  LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           K+K G  PL  A + GH  V ELL KHGA ++  D  K + L  A  KG  +  + ++ H
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Query: 337 VA 338
            A
Sbjct: 131 GA 132

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
           + E    T L  A       +VE LL  GAD+  +DK G  PL  A + GH +V ++L+ 
Sbjct: 41  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           H A +   ++  K TPL  A + G+YE+ +LLL  GA+   +N    TPL L   G
Sbjct: 101 HGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 155

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           L+ AA  G    VK L  + S     IE  ++T L  A    R  VV  LL   A+V  +
Sbjct: 16  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 75
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
            K GL PL  A S G+ EV  +L+  GA VN   +   + T L  AA KG     +LLL 
Sbjct: 76  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQ 133
Query: 270 KGAQVEVKNKKGNSPLWLAANG 291
            GA    KN+ GN+PL L  +G
Sbjct: 134 HGADPTKKNRDGNTPLDLVKDG 155

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G VE  + L    + VN   +   + T L  AA       VE LL  GA V  
Sbjct: 16  LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           K+K G  PL  A + GH  V ELL KHGA ++  D  K + L  A  KG  +  + ++ H
Sbjct: 75  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Query: 337 VA 338
            A
Sbjct: 135 GA 136

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
           + E    T L  A       +VE LL  GAD+  +DK G  PL  A + GH +V ++L+ 
Sbjct: 39  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           H A +   ++  K TPL  A + G+YE+ +LLL  GA+   +N    TPL L   G
Sbjct: 99  HGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 153

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/142 (38%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           L+ AA  G    VK L  + S     IE  ++T L  A    R  VV  LL   A+V  +
Sbjct: 14  LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAK 73
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
            K GL PL  A S G+ EV  +L+  GA VN   +   + T L  AA KG     +LLL 
Sbjct: 74  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL--WKFTPLHEAAAKGKYEICKLLLQ 131
Query: 270 KGAQVEVKNKKGNSPLWLAANG 291
            GA    KN+ GN+PL L  +G
Sbjct: 132 HGADPTKKNRDGNTPLDLVKDG 153

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L+EAA  G VE  + L    + VN   +   + T L  AA       VE LL  GA V  
Sbjct: 14  LLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           K+K G  PL  A + GH  V ELL KHGA ++  D  K + L  A  KG  +  + ++ H
Sbjct: 73  KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Query: 337 VA 338
            A
Sbjct: 133 GA 134

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G TPL+ A++ G +E  R LL+ GAD +   +   R++AL++A+  G+   V LLL +  
Sbjct: 36  GFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLASTGGYTDIVGLLLERDV 93
Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
            + + +  G +PL  A  G H+  VE L   GAD+ ++ +   + +  A   G+ K  + 
Sbjct: 94  DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153
Query: 333 MVNHVAQF------PSDQE 345
           + NH+ +       P+D E
Sbjct: 154 IENHILKLFQSNLVPADPE 172

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV-- 206
           PL  A M      V+ LL     +  Q + +    L  +     HE+ S LL +  NV  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 207 -EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
            ++   +G TP   A S G +EV + L D+    +   + +   T L +A  K      +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG-ADIDSQDNRKVSCLMAAFRK 324
            L+  GA V +K+K    PL  AA+ G L ++ELLC  G + ++ QD +  + L  A  +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 325 GHVKAVRWMV 334
           GH  A   +V
Sbjct: 185 GHGDAAVLLV 194

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV-- 206
           PL  A M      V+ LL     +  Q + +    L  +     HE+ S LL +  NV  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 207 -EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
            ++   +G TP   A S G +EV + L D+    +   + +   T L +A  K      +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG-ADIDSQDNRKVSCLMAAFRK 324
            L+  GA V +K+K    PL  AA+ G L ++ELLC  G + ++ QD +  + L  A  +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 325 GHVKAVRWMV 334
           GH  A   +V
Sbjct: 185 GHGDAAVLLV 194

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV-- 206
           PL  A M      V+ LL     +  Q + +    L  +     HE+ S LL +  NV  
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 207 -EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
            ++   +G TP   A S G +EV + L D+    +   + +   T L +A  K      +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG-ADIDSQDNRKVSCLMAAFRK 324
            L+  GA V +K+K    PL  AA+ G L ++ELLC  G + ++ QD +  + L  A  +
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184
Query: 325 GHVKAVRWMV 334
           GH  A   +V
Sbjct: 185 GHGDAAVLLV 194

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 30/242 (12%)
Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
            + A  +G T  V  LL+ G+DIN     +  TAL  AC     ++V  L++  AN+   
Sbjct: 44  FLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQP 102
Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI--------------- 254
              G  PL  AAS GY+++   L+ +GA V A  V S  DT L I               
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGA--VNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 255 -------AADKGHCRFV----ELLLSKGAQVEVKN-KKGNSPLWLAANGGHLSVVELLCK 302
                  AA K   R +       L+ G   +V++ K G + L +AA  G+  V++LL +
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220
Query: 303 HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKC 362
              D++ +D    + L AA   G  +A R +V ++    +  ++ +    V D+++L   
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYL 280
Query: 363 QE 364
           +E
Sbjct: 281 EE 282

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Query: 3   VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDI 62
           +D  T    +T L +A   G    VE LL  G+D   +D  G+TPL  A   GH KVV++
Sbjct: 2   IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 63  LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPL 115
           LL HKA +     +  D+PL  A   G  ++V+LLL+ GA++   N+    P+
Sbjct: 62  LLQHKALVNTTGYQN-DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 52/90 (57%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
           +T L IA+ KG    VE LL  G+   VK+  G +PL  A N GHL VVELL +H A ++
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN 70
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           +   +  S L  A + GHV  V+ ++++ A
Sbjct: 71  TTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 18/230 (7%)
Query: 145 LGISPLMLAAMNG--------------HTAAV-KLLLDMGSDINAQIETNRNTALTLACF 189
           +G++PLM+AA+ G               TA V   LL  G+++NA ++    T+L LA  
Sbjct: 1   MGLTPLMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAAR 60
Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL-DKGADVNAPPVPSSR 248
             R +    LLD  A+   +  TG TPL  A +   + V ++LL ++  ++NA     + 
Sbjct: 61  FARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGT- 119
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
            T L +AA       VE L++  A +   +  G + L  AA   +   V +L  H A+ D
Sbjct: 120 -TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD 178
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKEL 358
           +QD++  + L  A R+G  +A + ++++ A       M R  + V  + L
Sbjct: 179 AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERL 228

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 12/227 (5%)
Query: 113 TPLSLAASGGYV----NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168
           TPL +A   G +     ++ L    G E++    + L  +PL LA +    + V+LL+  
Sbjct: 11  TPLHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTLPSVVRLLVTA 68
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA----NVEHRAKTGLTPLMEAASGG 224
           G+   A ++ +  TA  LAC       +  LLD  A    ++E R   GLT L  A +  
Sbjct: 69  GASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
             E  ++LL++GAD++A  + S R + L  A +      V+LLL  GA V  +   G+S 
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGR-SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSA 186
Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
           L  A+  G L +V  L + GAD   ++    + LM A  +  +  +R
Sbjct: 187 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL-----T 132
           + TPL LA    + E+ E LL  G + E R+    TPL LA   G +  + +L       
Sbjct: 45  QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
           H   I   T    G + L LA+++G+   V+LL+ +G+D+NAQ   N  TAL LA     
Sbjct: 105 HLHSILKATNYN-GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163
Query: 193 HEVVSLLLDRKANVEHRAKTGLTP 216
            ++VSLLL   A+V      G +P
Sbjct: 164 PDLVSLLLKCGADVNRVTYQGYSP 187

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           +PL LA +       + LL  G D   + +   NT L LAC QG    V +L  +     
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVL-TQSCTTP 104
Query: 208 HRAKT-------GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
           H           G T L  A+  GY+ +  +L+  GADVNA   P +  TAL +A D  +
Sbjct: 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-PCNGRTALHLAVDLQN 163
Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWLA 288
              V LLL  GA V     +G SP  L 
Sbjct: 164 PDLVSLLLKCGADVNRVTYQGYSPYQLT 191

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL-----T 132
           + TPL LA    + E+ E LL  G + E R+    TPL LA   G +  + +L       
Sbjct: 42  QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
           H   I   T    G + L LA+++G+   V+LL+ +G+D+NAQ   N  TAL LA     
Sbjct: 102 HLHSILKATNYN-GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 160
Query: 193 HEVVSLLLDRKANVEHRAKTGLTP 216
            ++VSLLL   A+V      G +P
Sbjct: 161 PDLVSLLLKCGADVNRVTYQGYSP 184

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           +PL LA +       + LL  G D   + +   NT L LAC QG    V +L  +     
Sbjct: 44  TPLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVL-TQSCTTP 101
Query: 208 HRAKT-------GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
           H           G T L  A+  GY+ +  +L+  GADVNA   P +  TAL +A D  +
Sbjct: 102 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-PCNGRTALHLAVDLQN 160
Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWL 287
              V LLL  GA V     +G SP  L
Sbjct: 161 PDLVSLLLKCGADVNRVTYQGYSPYQL 187

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           + L  AC  G   +VE+L+ RGA I   ++   TPL LAA+ GH  +V  LL +KAD+ A
Sbjct: 36  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGA 102
            +E   + PL  AC  G+ +V E L+  GA
Sbjct: 96  VNEHG-NVPLHYACFWGQDQVAEDLVANGA 124

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           +PL  AC  GR  VVE+L+ RGA     N  D TPL LAAS G+ +I++ LL + A+IN+
Sbjct: 36  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
              ++ G  PL  A   G     + L+  G+
Sbjct: 96  V--NEHGNVPLHYACFWGQDQVAEDLVANGA 124

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP 216
           G+  AV+L LD   +   Q + +  + L  AC +GR  VV +L+ R A +    +   TP
Sbjct: 11  GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L  AAS G+ ++ + LL   AD+NA  V    +  L  A   G  +  E L++ GA V +
Sbjct: 71  LHLAASHGHRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 128
Query: 277 KNKKGNSPL 285
            NK G  P+
Sbjct: 129 CNKYGEMPV 137

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           + L  A  +G    VE+L+ +GA++ V N+  ++PL LAA+ GH  +V+ L ++ ADI++
Sbjct: 36  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 95

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           + L  AC  G   +VE+L+ RGA I   ++   TPL LAA+ GH  +V  LL +KAD+ A
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100
Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGA 102
            +E   + PL  AC  G+ +V E L+  GA
Sbjct: 101 VNEHG-NVPLHYACFWGQDQVAEDLVANGA 129

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 2/144 (1%)
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
           GS   +  +      G+  AV+L LD   +   Q + +  + L  AC +GR  VV +L+ 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC 261
           R A +    +   TPL  AAS G+ ++ + LL   AD+NA  V    +  L  A   G  
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQD 118
Query: 262 RFVELLLSKGAQVEVKNKKGNSPL 285
           +  E L++ GA V + NK G  P+
Sbjct: 119 QVAEDLVANGALVSICNKYGEMPV 142

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 188 CFQGRHEVVSLLLDRKAN-VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPS 246
           C +G    V L LD   N +      G +PL  A   G   V  +L+ +GA +N   +  
Sbjct: 13  CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNR 70
Query: 247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
             DT L +AA  GH   V+ LL   A +   N+ GN PL  A   G   V E L  +GA
Sbjct: 71  GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           + L  A  +G    VE+L+ +GA++ V N+  ++PL LAA+ GH  +V+ L ++ ADI++
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 17/219 (7%)
Query: 34  GADIEHRDKKGFTPLILAATAGHD-------------KVVDILLNHKADMEAQSERTKDT 80
           G D+  R   GFTPL++A+ +G                V+   +   A +  Q++RT +T
Sbjct: 1   GMDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGET 60
Query: 81  PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-EINS 139
            L LA    R +  + LL   A+   ++    TPL  A S     + ++L+ + A ++++
Sbjct: 61  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           R     G +PL+LAA       ++ L++  +D+NA ++    +AL  A      +   +L
Sbjct: 121 RMHD--GTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVL 177
Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           L   AN + +     TPL  AA  G  E  +VLLD  A+
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 216

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 18/234 (7%)
Query: 134 GAEINSRTGSKLGISPLMLAAMNGH-------------TAAVKLLLDMGSDINAQIETNR 180
           G ++N R     G +PLM+A+ +G               A +   +  G+ ++ Q +   
Sbjct: 1   GMDVNVRGPD--GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTG 58
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL-DKGADV 239
            TAL LA    R +    LL+  A+   +   G TPL  A S     V ++L+ ++  D+
Sbjct: 59  ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 118
Query: 240 NAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
           +A     +  T L +AA       +E L++  A V   +  G S L  AA   ++    +
Sbjct: 119 DARMHDGT--TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVV 176
Query: 300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTV 353
           L K+GA+ D Q+NR+ + L  A R+G  +  + +++H A       M R  + +
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 230

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 18 ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
          A   G ++ V +L++ GAD+  +DK G+TPL LAA  GH ++V++LL   AD+ AQ +  
Sbjct: 9  AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 78 KDTPLSLACSGGRYEVVELL 97
          K T   ++   G  ++ E+L
Sbjct: 69 K-TAFDISIDNGNEDLAEIL 87

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           AA  G    V +L++ GA V  K+K G +PL LAA  GHL +VE+L K GAD+++QD
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 23/248 (9%)
Query: 36  DIEHRDKKGFTPLILAATAGHD-------------KVVDILLNHKADMEAQSERTKDTPL 82
           D+  R   GFTPL++A+ +G                V+   +   A +  Q++RT +T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61
Query: 83  SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-EINSRT 141
            LA    R +  + LL   A+   ++    TPL  A S     + ++L+ + A ++++R 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
               G +PL+LAA       ++ L++  +D+NA ++    +AL  A      +   +LL 
Sbjct: 122 HD--GTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA--DVNAPPVPSSRDTALTIAADKG 259
             AN + +     TPL  AA  G  E  +VLLD  A  D+        RD    IA ++ 
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD----IAQERM 234
Query: 260 HCRFVELL 267
           H   V LL
Sbjct: 235 HHDIVRLL 242

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 146 GISPLMLAAMNG-------------HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
           G +PLM+A+ +G               A +   +  G+ ++ Q +    TAL LA    R
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 193 HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL-DKGADVNAPPVPSSRDTA 251
            +    LL+  A+   +   G TPL  A S     V ++L+ ++  D++A     +  T 
Sbjct: 70  SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT--TP 127
Query: 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           L +AA       +E L++  A V   +  G S L  AA   ++    +L K+GA+ D Q+
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 312 NRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTV 353
           NR+ + L  A R+G  +  + +++H A       M R  + +
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 17/217 (7%)
Query: 36  DIEHRDKKGFTPLILAATAGHD-------------KVVDILLNHKADMEAQSERTKDTPL 82
           D+  R   GFTPL++A+ +G                V+   +   A +  Q++RT  T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATAL 61
Query: 83  SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-EINSRT 141
            LA +  R +  + LL   A+   ++    TPL  A S     + ++L+ + A ++++R 
Sbjct: 62  HLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121
Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
               G +PL+LAA       ++ L++  +D+NA ++    +AL  A      +   +LL 
Sbjct: 122 HD--GTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
             AN + +     TPL  AA  G  E  +VLLD  A+
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 146 GISPLMLAAMNG-------------HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
           G +PLM+A+ +G               A +   +  G+ ++ Q +    TAL LA    R
Sbjct: 10  GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSR 69
Query: 193 HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL-DKGADVNAPPVPSSRDTA 251
            +    LL+  A+   +   G TPL  A S     V ++L+ ++  D++A     +  T 
Sbjct: 70  SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT--TP 127
Query: 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           L +AA       +E L++  A V   +  G S L  AA   ++    +L K+GA+ D Q+
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187
Query: 312 NRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTV 353
           NR+ + L  A R+G  +  + +++H A       M R  + +
Sbjct: 188 NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 229

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 7/196 (3%)
Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206
           +  L+ AA    T  VK +L   +    +++T  NT L +A      E+   L+DR A++
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
             +     +P + A + G  E+   +L K A  +          AL  AA+KGH   V+L
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKL 124
Query: 267 LLSKGAQ-VEVKNKKGNSPLWLA-----ANGGHLSVVELLCKHGADIDSQDNRKVSCLMA 320
           LL  G + ++ +N  G + L  A      N  +  +V+LL ++GAD   +DN   + +  
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Query: 321 AFRKGHVKAVRWMVNH 336
           A +KG+ +  + +  +
Sbjct: 185 ANQKGYTEISKILAQY 200

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
           V +  +T L IA         + L+ +GA + ++N   +SP   A   G   ++  + KH
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94
Query: 304 GA-DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ---FPSDQEMTRYIQTVNDKE 357
              D++  +    + L+ A  KGH+  V+ ++    +   F +D   T  I+ V  +E
Sbjct: 95  ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLRE 152

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           AA  G    V +L++ GA V  K+K G++PL LAA  GHL VV+LL + GAD+++QD
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           AA  G    V +L++ GA V  K+K G++PL LAA  GHL VV+LL + GAD+ +QD
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 13  TALTLACAGGHEELVELLL-SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
           T L  A +   + + ++LL +R  D++ R   G TPLILAA    + +++ L+N  AD+ 
Sbjct: 57  TPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVN 116
Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
           A  +  K + L  A +    +   +LL  GANK+ +N  + TPL LAA  G     K+LL
Sbjct: 117 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
            H A  N      +   P  +A    H   V+LL
Sbjct: 176 DHFA--NRDITDHMDRLPRDIAQERMHHDIVRLL 207

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 59  VVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
           V+   +   A +  Q++RT +T L LA    R +  + LL   A+   ++    TPL  A
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 119 ASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
            S     + ++LL + A ++++R     G +PL+LAA       ++ L++  +D+NA ++
Sbjct: 63  VSADAQGVFQILLRNRATDLDARMHD--GTTPLILAARLALEGMLEDLINSHADVNA-VD 119
Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
               +AL  A      +   +LL   AN + +     TPL  AA  G  E  +VLLD  A
Sbjct: 120 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA 179
Query: 238 --DVNAPPVPSSRDTALTIAADKGHCRFVELL 267
             D+        RD    IA ++ H   V LL
Sbjct: 180 NRDITDHMDRLPRD----IAQERMHHDIVRLL 207

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 3/181 (1%)
Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
           G+ ++ Q +    TAL LA    R +    LL+  A+   +   G TPL  A S     V
Sbjct: 11  GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV 70
Query: 229 GRVLL-DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWL 287
            ++LL ++  D++A     +  T L +AA       +E L++  A V   +  G S L  
Sbjct: 71  FQILLRNRATDLDARMHDGT--TPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHW 128
Query: 288 AANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMT 347
           AA   ++    +L K+GA+ D Q+N++ + L  A R+G  +  + +++H A       M 
Sbjct: 129 AAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMD 188
Query: 348 R 348
           R
Sbjct: 189 R 189

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 11/136 (8%)
Query: 6   ETESNHDTALTLACAG-GHEELV--ELLLSRGADIEH--------RDKKGFTPLILAATA 54
           E + N  TAL +     G +++   +LL+ +GA +++           KG T L  AA  
Sbjct: 230 ELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289
Query: 55  GHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP 114
            +  +V  L+  K   + + +    TP+ LA   GR EVV  L+ +GA+ E  + +D+T 
Sbjct: 290 SNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTA 349
Query: 115 LSLAASGGYVNIIKLL 130
             LA +  + NI+ + 
Sbjct: 350 RQLAQANNHHNIVDIF 365

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 30  LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGG 89
           L +R  D++ R   G TPLILAA    + +++ L+N  AD+ A  +  K + L  A +  
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGK-SALHWAAAVN 59
Query: 90  RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP 149
             +   +LL  GANK+ +N  + TPL LAA  G     K+LL H A  N      +   P
Sbjct: 60  NVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFA--NRDITDHMDRLP 117
Query: 150 LMLAAMNGHTAAVKLL 165
             +A    H   V+LL
Sbjct: 118 RDIAQERMHHDIVRLL 133

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 13  TALTLACAGGHEELVELLL-SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
           T L  A +   + + ++L+ +R  D++ R   G TPLILAA    + +++ L+N  AD+ 
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
           A  +  K + L  A +    +   +LL  GANK+ +N  + TPL LAA  G     K+LL
Sbjct: 120 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 178
Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
            H A  N      +   P  +A    H   V+LL
Sbjct: 179 DHFA--NRDITDHMDRLPRDIAQERMHHDIVRLL 210

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 3/190 (1%)
Query: 160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLME 219
           A +   +  G+ ++ Q +    TAL LA    R +    LL+  A+   +   G TPL  
Sbjct: 5   AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 220 AASGGYVEVGRVLL-DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN 278
           A S     V ++L+ ++  D++A     +  T L +AA       +E L++  A V   +
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGT--TPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 279 KKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
             G S L  AA   ++    +L K+GA+ D Q+NR+ + L  A R+G  +  + +++H A
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182
Query: 339 QFPSDQEMTR 348
                  M R
Sbjct: 183 NRDITDHMDR 192

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 89  GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
           G  E+   LL RGAN + ++ + +  +  AA  G+++ ++ LL + A++N       G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           PL LAA  GH   V+ L+   +          +TA  LA   GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
           G  E+   LL R AN + + +TG   + +AA  G+++  + LL+  ADVN          
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVN---------- 97
Query: 251 ALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
                                    +++ +GN PL LAA  GHL VVE L KH A     
Sbjct: 98  -------------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 311 DNRK 314
            N K
Sbjct: 133 RNHK 136

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           G+      LL +GA  ++K++ G + +  AA  G L  ++ L ++ AD++ +DN     L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
             A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
           LL +GA+   ++ S  +P+  AA  G+++ +K+L+ HGA++N   G+  G  P+ LA   
Sbjct: 60  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQE 117
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           GHTA V  L    SD++ + +    T L LA  +G  ++V +L
Sbjct: 118 GHTAVVSFLA-AESDLHRR-DARGLTPLELALQRGAQDLVDIL 158

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            TAL +  F G   +   LL + A+   +  +G +P+ +AA  G+++  +VL++ GADVN
Sbjct: 43  KTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Query: 241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            P    +    + +A  +GH   V  L ++ + +  ++ +G +PL LA   G   +V++L
Sbjct: 102 VP--DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 158
Query: 301 CKH 303
             H
Sbjct: 159 QGH 161

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           LL +GA   V++  G SP+  AA  G L  +++L +HGAD++  D      +  A ++GH
Sbjct: 60  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 327 VKAVRWM 333
              V ++
Sbjct: 120 TAVVSFL 126

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 89  GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
           G  E+   LL RGAN + ++ + +  +  AA  G+++ ++ LL   A++N       G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           PL LAA  GH   V+ L+   +          +TA  LA   GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
           G  E+   LL R AN + + +TG   + +AA  G+++  + LL+  ADVN          
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN---------- 97
Query: 251 ALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
                                    +++ +GN PL LAA  GHL VVE L KH A     
Sbjct: 98  -------------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 311 DNRK 314
            N K
Sbjct: 133 RNHK 136

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           G+      LL +GA  ++K++ G + +  AA  G L  ++ L +  AD++ +DN     L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
             A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
           LL +GA+   ++ S  +P+  AA  G+++ +K+L+ HGA++N   G+  G  P+ LA   
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQE 111
Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           GHTA V  L    SD++ + +    T L LA  +G  ++V +L
Sbjct: 112 GHTAVVSFLA-AESDLHRR-DARGLTPLELALQRGAQDLVDIL 152

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            TAL +  F G   +   LL + A+   +  +G +P+ +AA  G+++  +VL++ GADVN
Sbjct: 37  KTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
Query: 241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            P    +    + +A  +GH   V  L ++ + +  ++ +G +PL LA   G   +V++L
Sbjct: 96  VP--DGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDIL 152
Query: 301 CKH 303
             H
Sbjct: 153 QGH 155

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           LL +GA   V++  G SP+  AA  G L  +++L +HGAD++  D      +  A ++GH
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 327 VKAVRWM 333
              V ++
Sbjct: 114 TAVVSFL 120

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 22  GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTP 81
           G+ E+   LL RGA+ + +D+ GF  +  AA AG    +  LL  +AD+  + +   + P
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLP 106
Query: 82  LSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA 135
           L LA   G   VVE L+   A N  HRN    T   LA   G   ++ L+  +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 89  GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
           G  E+   LL RGAN + ++ + +  +  AA  G ++ ++ LL   A++N       G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           PL LAA  GH   V+ L+   +          +TA  LA   GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRD-TALTI---AADKGHCRFVELLLSKGAQVEVKNK 279
           G  E+ R LL +GA+      P  +D T   +   AA  G    ++ LL   A V +++ 
Sbjct: 48  GNPEIARRLLLRGAN------PDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDN 101
Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
           +GN PL LAA  GHL VVE L KH A      N K
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 89  GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
           G  E+   LL RGAN + ++ + +  +  AA  G+++ ++ LL   A++N       G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           PL LAA  GH   V+ L+   +          +TA  LA   GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 35/124 (28%)
Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT 250
           G  E+   LL R AN + + +TG   + +AA  G+++  + LL+  ADVN          
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN---------- 97
Query: 251 ALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ 310
                                    +++ +GN PL LAA  GHL VVE L KH A     
Sbjct: 98  -------------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132
Query: 311 DNRK 314
            N K
Sbjct: 133 RNHK 136

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           G+      LL +GA  ++K++ G + +  AA  G L  ++ L +  AD++ +DN     L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
             A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%)
Query: 243 PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK 302
           P+ S  D     A   G    V+  ++KG  V    + G  PL  AA+ G L ++E L  
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61
Query: 303 HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
            GADI++ D   ++ L++A  +GHV  V+ +++  A
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           TAL +   G     +ELL  +GA    +D  G +P+  AA  G    + +L+ H AD+ A
Sbjct: 46  TALQVMMFGSPAVALELL-KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA 104
Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
             + T   P+ LA   G   VV  L    ++  HR+ S  TPL LA   G  N++ +L  
Sbjct: 105 L-DSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 162
Query: 133 H 133
           H
Sbjct: 163 H 163

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           LL +GA   V++  G SP+  AA  G L  +++L +HGAD+++ D+     +  A R+GH
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 327 VKAVRWM 333
              V ++
Sbjct: 122 SSVVSFL 128

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           TAL +   G     +ELL  +GA    +D  G +P+  AA  G    + +L+ H AD+ A
Sbjct: 44  TALQVMMFGSPAVALELL-KQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA 102
Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
             + T   P+ LA   G   VV  L    ++  HR+ S  TPL LA   G  N++ +L  
Sbjct: 103 L-DSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELARQRGAQNLMDILQG 160
Query: 133 H 133
           H
Sbjct: 161 H 161

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           LL +GA   V++  G SP+  AA  G L  +++L +HGAD+++ D+     +  A R+GH
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 327 VKAVRWM 333
              V ++
Sbjct: 120 SSVVSFL 126

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
           +V    + G  PL  AA  G +E+   LL KGAD+NAP       T L  A  +GH   V
Sbjct: 27  DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP--DKHHITPLLSAVYEGHVSCV 84
Query: 265 ELLLSKGAQVEVKNKKGNSPL 285
           +LLLSKGA   VK   G + L
Sbjct: 85  KLLLSKGADKTVKGPDGLTAL 105

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
           D     A   G    V+  ++KG  V    + G  PL  AA+ G L ++E L   GADI+
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVN 335
           + D   ++ L++A  +GHV  V+ +++
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLS 89

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 41/85 (48%)
Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
           A   G  + ++ LL   AD+   D +G  PL LAA  GH +VV+ L+ H A         
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 78  KDTPLSLACSGGRYEVVELLLTRGA 102
            DT   LA   GR EVV L+   GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 89  GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
           G  E+   LL RGAN + ++ +    +  AA  G+++ ++ LL   A++N       G  
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNE--GNL 105
Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           PL LAA  GH   V+ L+   +          +TA  LA   GR+EVVSL+
Sbjct: 106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           G+      LL +GA  ++K++ GN+ +  AA  G L  ++ L +  AD++ +DN     L
Sbjct: 48  GNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Query: 319 MAAFRKGHVKAVRWMVNHVA 338
             A ++GH++ V ++V H A
Sbjct: 108 HLAAKEGHLRVVEFLVKHTA 127

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 26/172 (15%)
Query: 113 TPLSLAASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAM-----NGHTAAVKLLL 166
           T L  + S     +++ LL  G  +++ +  ++ G SP+ML A+           V  L 
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQ--NRAGYSPIMLTALATLKTQDDIETVLQLF 170
Query: 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
            +G +INA+      TAL LA   GR +VV  LL  +A+V  +   G T LM A   G+ 
Sbjct: 171 RLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHK 229
Query: 227 EVGRVLLDKGADVNAPPVPS------SRD--TALTIAADKGHCRFVELLLSK 270
           E+  +LL          VPS       RD  TAL +A D G      +L S+
Sbjct: 230 EIAGLLL---------AVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV SE E+   TA   A     + L +LL  R  D++  D+ G T L+  A  G DK V 
Sbjct: 39  DVVSEYETPWWTA---ARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVR 93
Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
           +L    AD++ +  R   T L +A    R EVVE L+  GA+ E  +    T L LA
Sbjct: 94  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSR---DTALTIAADKGHCR 262
           V  R   G T L  AA    +E   VL++   ++   P+ S      TAL IA    +  
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN 89
Query: 263 FVELLLSKGAQVEVKNK-------------KGNSPLWLAANGGHLSVVELLCKHGADIDS 309
            V  LL++GA V  +                G  PL  AA  G   +V LL +HGADI +
Sbjct: 90  LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA 149
Query: 310 QDN 312
           QD+
Sbjct: 150 QDS 152

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV SE E+   TA   A     + L +LL  R  D++  D+ G T L+  A  G DK V 
Sbjct: 40  DVVSEYETPWWTA---ARKADEQALSQLLEDR--DVDAVDENGRTALLFVAGLGSDKCVR 94
Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
           +L    AD++ +  R   T L +A    R EVVE L+  GA+ E  +    T L LA
Sbjct: 95  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 88/225 (39%), Gaps = 18/225 (8%)
Query: 12  DTALTLACAGGHEELVELLLSRGADIEHRDKK---GFTPLILAATAGHDKVVDILLNHKA 68
           DTAL LA    HE  ++ LL   A  E+ D +   G T L LAA  G    V+ L    A
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYVNII 127
            +   +ER   T L LAC   R      +L +      R+ SD Y   S   +    +  
Sbjct: 70  GVLV-AERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 128 KLLLTHGAEINSRTGSKL------------GISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
             + +     N                   G +PL +A ++     V+LL D G+D+N  
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 176 IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
             T   T L LA       V+ LLL   A+   R   G TPL  A
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 88/225 (39%), Gaps = 18/225 (8%)
Query: 12  DTALTLACAGGHEELVELLLSRGADIEHRDKK---GFTPLILAATAGHDKVVDILLNHKA 68
           DTAL LA    HE  ++ LL   A  E+ D +   G T L LAA  G    V+ L    A
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYVNII 127
            +   +ER   T L LAC   R      +L +      R+ SD Y   S   +    +  
Sbjct: 70  GVLV-AERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 128 KLLLTHGAEINSRTGSKL------------GISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
             + +     N                   G +PL +A ++     V+LL D G+D+N  
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 176 IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
             T   T L LA       V+ LLL   A+   R   G TPL  A
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 41  DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR 100
           DK G T L  A   GH  +V+ L         Q  +  DT L  A   G  ++V+LLL +
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIK 128
           GA  + RN+        A +    +++K
Sbjct: 163 GARTDLRNIEKKLAFDXATNAACASLLK 190

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 47  PLIL---AATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
           PL+L   AA  G  +VV   +    D  +Q      T L  A  G  Y +V+ L+T GAN
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGAN 79
Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRT 141
               +   +TPL  AAS     I   L+ HGA I + T
Sbjct: 80  VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	596
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-115
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-112
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-110
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-101
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-66
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-42
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-84
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-83
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-69
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-42
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-93
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-73
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-67
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-61
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-55
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-86
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-64
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-52
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-86
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-83
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-74
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-68
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-26
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-83
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-83
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-82
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-74
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-67
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-57
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-25
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-80
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-72
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-80
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-62
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-76
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-65
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-56
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-75
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-72
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-65
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-48
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-75
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-49
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-45
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-72
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-69
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-65
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-67
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-62
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-54
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-44
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-65
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-64
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-60
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-57
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-26
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-63
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-61
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-55
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-54
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-32
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-61
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-58
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-56
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-39
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-58
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-55
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-51
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-48
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-57
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-56
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-48
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-44
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-55
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-55
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-54
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-53
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-46
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-44
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-54
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-54
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-51
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-46
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-29
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-54
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-51
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-44
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-54
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-54
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-49
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-23
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-54
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-52
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-47
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-40
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-52
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-49
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-49
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-46
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-42
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-37
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-32
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-51
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-50
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-51
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-50
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-45
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-43
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-40
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-06
2rfa_A	232	Transient receptor potential cation channel subfa	5e-49
2rfa_A	232	Transient receptor potential cation channel subfa	6e-48
2rfa_A	232	Transient receptor potential cation channel subfa	4e-38
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-48
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-48
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-47
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-44
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-47
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-45
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-44
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-32
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-47
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-45
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-46
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-45
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-44
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-41
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-38
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-36
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-45
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-41
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-40
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-40
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-39
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-39
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-22
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-43
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-43
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-41
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-38
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-35
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-30
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-42
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-40
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-37
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-30
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-42
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-41
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-41
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-39
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-34
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-07
2pnn_A	273	Transient receptor potential cation channel subfa	7e-42
2pnn_A	273	Transient receptor potential cation channel subfa	1e-39
2pnn_A	273	Transient receptor potential cation channel subfa	3e-28
2pnn_A	273	Transient receptor potential cation channel subfa	1e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-40
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-38
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-37
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-25
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-40
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-40
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-40
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-38
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-36
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-19
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-40
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-39
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-36
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-34
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-28
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-40
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-39
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-39
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-36
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-34
2etb_A	256	Transient receptor potential cation channel subfam	9e-40
2etb_A	256	Transient receptor potential cation channel subfam	1e-31
2etb_A	256	Transient receptor potential cation channel subfam	2e-29
2etb_A	256	Transient receptor potential cation channel subfam	2e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-39
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-34
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-32
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-35
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-34
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-33
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-32
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-34
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-32
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-31
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-22
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-32
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-30
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-29
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-28
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-31
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-29
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-27
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-30
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-26
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-30
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-28
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-26
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-11
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-09
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	3e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	6e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-09
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	4e-09
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-09
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	5e-07
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	4e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	5e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  348 bits (895), Expect = e-115
 Identities = 122/337 (36%), Positives = 166/337 (49%), Gaps = 11/337 (3%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
                 ES   T L +A   GH  +V+ LL RGA     + K  TPL +AA AGH +V  
Sbjct: 6   SGGGGGESG-LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAK 64

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
            LL +KA + A+++    TPL  A   G   +V+LLL   AN      + +TPL +AA  
Sbjct: 65  YLLQNKAKVNAKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
           G+V  +  LL   A     T  K G +PL +AA  G     +LLL+  +  NA  + N  
Sbjct: 124 GHVETVLALLEKEASQACMT--KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGL 180

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           T L +A      ++V LLL R  +    A  G TPL  AA    VEV R LL  G   NA
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240

Query: 242 PPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
                S    T L +AA +GH   V LLLSK A   + NK G +PL L A  GH+ V ++
Sbjct: 241 E----SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296

Query: 300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           L KHG  +D+      + L  A   G++K V++++ H
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH 333

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  341 bits (877), Expect = e-112
 Identities = 101/335 (30%), Positives = 163/335 (48%), Gaps = 7/335 (2%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
             +       +T L +A   GH E+ + LL   A +  + K   TPL  AA  GH  +V 
Sbjct: 39  SPNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL + A+    +     TPL +A   G  E V  LL + A++       +TPL +AA  
Sbjct: 98  LLLENNANPNLAT-TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
           G V + +LLL   A  N+    K G++PL +A  + +   VKLLL  G   ++    N  
Sbjct: 157 GKVRVAELLLERDAHPNAAG--KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-NGY 213

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           T L +A  Q + EV   LL    +    +  G+TPL  AA  G+ E+  +LL K A+ N 
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273

Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLC 301
                S  T L + A +GH    ++L+  G  V+   + G +PL +A++ G++ +V+ L 
Sbjct: 274 GN--KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331

Query: 302 KHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           +H AD++++     S L  A ++GH   V  ++ +
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  337 bits (867), Expect = e-110
 Identities = 114/344 (33%), Positives = 161/344 (46%), Gaps = 19/344 (5%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            V+++ + +  T L  A   GH  +V+LLL   A+       G TPL +AA  GH + V 
Sbjct: 72  KVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130

Query: 62  ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA 119
            LL  +A        TK   TPL +A   G+  V ELLL R A+      +  TPL +A 
Sbjct: 131 ALLEKEASQACM---TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAV 187

Query: 120 SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETN 179
               ++I+KLLL  G   +S      G +PL +AA        + LL  G   NA+    
Sbjct: 188 HHNNLDIVKLLLPRGGSPHSPA--WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-Q 244

Query: 180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
             T L LA  +G  E+V+LLL ++AN     K+GLTPL   A  G+V V  VL+  G  V
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304

Query: 240 NAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS 295
           +A            T L +A+  G+ + V+ LL   A V  K K G SPL  AA  GH  
Sbjct: 305 DA------TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 358

Query: 296 VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
           +V LL K+GA  +   +   + L  A R G++     +     +
Sbjct: 359 IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  314 bits (806), Expect = e-101
 Identities = 94/305 (30%), Positives = 140/305 (45%), Gaps = 6/305 (1%)

Query: 32  SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY 91
           S G       + G TPL +A+  GH  +V  LL   A     + +  +TPL +A   G  
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK-VETPLHMAARAGHT 60

Query: 92  EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
           EV + LL   A    +   D TPL  AA  G+ N++KLLL + A  N  T    G +PL 
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT--TAGHTPLH 118

Query: 152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAK 211
           +AA  GH   V  LL+  +           T L +A   G+  V  LLL+R A+     K
Sbjct: 119 IAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

Query: 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271
            GLTPL  A     +++ ++LL +G   ++P    +  T L IAA +        LL  G
Sbjct: 178 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP--AWNGYTPLHIAAKQNQVEVARSLLQYG 235

Query: 272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
                ++ +G +PL LAA  GH  +V LL    A+ +  +   ++ L    ++GHV    
Sbjct: 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295

Query: 332 WMVNH 336
            ++ H
Sbjct: 296 VLIKH 300

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  286 bits (734), Expect = 8e-91
 Identities = 85/313 (27%), Positives = 128/313 (40%), Gaps = 27/313 (8%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
                T+    T L +A   G   + ELLL R A      K G TPL +A    +  +V 
Sbjct: 138 SQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL       + +     TPL +A    + EV   LL  G +    +V   TPL LAA  
Sbjct: 197 LLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
           G+  ++ LLL+  A  N     K G++PL L A  GH     +L+  G  ++A       
Sbjct: 256 GHAEMVALLLSKQANGNLGN--KSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT-TRMGY 312

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           T L +A   G  ++V  LL  +A+V  + K G +PL +AA  G+ ++  +LL  GA  N 
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372

Query: 242 PPVPSSRD----TALTIAADKGHCRFVELL---LSKGAQVEVKNKKGNSPLWLAANGGHL 294
                       T L IA   G+    ++L     + + V V +K               
Sbjct: 373 ------VSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRM---------SFP 417

Query: 295 SVVELLCKHGADI 307
             V+ +     D 
Sbjct: 418 ETVDEILDVSEDE 430

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  221 bits (565), Expect = 5e-66
 Identities = 72/243 (29%), Positives = 108/243 (44%), Gaps = 17/243 (6%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
              S   + + T L +A      E+   LL  G        +G TPL LAA  GH ++V 
Sbjct: 204 SPHSPAWNGY-TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL+ +A+    ++ +  TPL L    G   V ++L+  G   +      YTPL +A+  
Sbjct: 263 LLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY 321

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
           G + ++K LL H A++N++T  KLG SPL  AA  GHT  V LLL  G+  N    ++  
Sbjct: 322 GNIKLVKFLLQHQADVNAKT--KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV-SSDGT 378

Query: 182 TALTLACFQGRHEVVSLL---LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           T L +A   G   V  +L    D  + V    K  ++           E    +LD   D
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP---------ETVDEILDVSED 429

Query: 239 VNA 241
              
Sbjct: 430 EGE 432

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  155 bits (395), Expect = 8e-42
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 20/180 (11%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           + +   + +  T L L    GH  + ++L+  G  ++   + G+TPL +A+  G+ K+V 
Sbjct: 270 NGNLGNK-SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328

Query: 62  ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA 119
            LL H+AD+ A+   TK   +PL  A   G  ++V LLL  GA+    +    TPL++A 
Sbjct: 329 FLLQHQADVNAK---TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385

Query: 120 SGGYVNIIKLLLT---HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
             GY+++  +L       + +      K                 V  +LD+  D   ++
Sbjct: 386 RLGYISVTDVLKVVTDETSFVLVS--DKHR---------MSFPETVDEILDVSEDEGEEL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  107 bits (271), Expect = 3e-25
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
            G          S  T L +A+  GH   V+ LL +GA   V N K  +PL +AA  GH 
Sbjct: 3   PGISGGG--GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHT 60

Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
            V + L ++ A ++++     + L  A R GH   V+ ++ + A
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.1 bits (222), Expect = 4e-19
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV+++T+    + L  A   GH ++V LLL  GA        G TPL +A   G+  V D
Sbjct: 336 DVNAKTK-LGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

Query: 62  IL---LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVS 110
           +L    +  + +    ++ + +           E V+ +L    ++    +S
Sbjct: 395 VLKVVTDETSFVLVS-DKHRMSFP---------ETVDEILDVSEDEGEELIS 436

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 2e-15
 Identities = 19/71 (26%), Positives = 37/71 (52%)

Query: 269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
           S G       + G +PL +A+  GHL +V+ L + GA  +  + +  + L  A R GH +
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 329 AVRWMVNHVAQ 339
             ++++ + A+
Sbjct: 62  VAKYLLQNKAK 72

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  289 bits (742), Expect = 3e-93
 Identities = 90/320 (28%), Positives = 133/320 (41%), Gaps = 33/320 (10%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
                 E   D  L  A +G  E+L+ LL     +    D +  TPL LAA     ++V 
Sbjct: 16  KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ 75

Query: 62  ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAA 119
           +LL H AD+ A+    K    PL  ACS G YEV ELLL  GA     ++  +TPL  AA
Sbjct: 76  LLLQHGADVHAK---DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAA 132

Query: 120 SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETN 179
           S   V +  LLL+HGA+         G S + +A        +                 
Sbjct: 133 SKNRVEVCSLLLSHGADPTLVN--CHGKSAVDMAPTPELRERLTYEFK------------ 178

Query: 180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY---VEVGRVLLDKG 236
              +L  A  +     V   L  +     + ++  T L  A +  +    +V  +LL KG
Sbjct: 179 -GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237

Query: 237 ADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
           A+VN       ++    T L +AA++ H   +E+L   GA++   +  G + L  AA  G
Sbjct: 238 ANVNE------KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG 291

Query: 293 HLSVVELLCKHGADIDSQDN 312
           HL    LL  +G+D      
Sbjct: 292 HLQTCRLLLSYGSDPSIISL 311

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  265 bits (681), Expect = 4e-84
 Identities = 89/320 (27%), Positives = 137/320 (42%), Gaps = 22/320 (6%)

Query: 21  GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGH-DKVVDILLNHKADMEAQSERTKD 79
           G   +    L    A      +     L+ AA +G+ +K++ +L     +  A   R K 
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR-KS 59

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           TPL LA    R  +V+LLL  GA+   ++     PL  A S G+  + +LLL HGA +N+
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
                   +PL  AA         LLL  G+D       +  +A+ +A      E ++  
Sbjct: 120 MD--LWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-NCHGKSAVDMAPTPELRERLTYE 176

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
                        G + L  A      +V +  L         P   S +TAL  A    
Sbjct: 177 FK-----------GHSLLQAAREADLAKV-KKTLALEIINFKQP--QSHETALHCAVASL 222

Query: 260 HCRF---VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
           H +     ELLL KGA V  KNK   +PL +AA   H  V+E+L KHGA +++ D+   +
Sbjct: 223 HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT 282

Query: 317 CLMAAFRKGHVKAVRWMVNH 336
            L  A   GH++  R ++++
Sbjct: 283 ALHRAALAGHLQTCRLLLSY 302

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  263 bits (675), Expect = 3e-83
 Identities = 89/314 (28%), Positives = 133/314 (42%), Gaps = 27/314 (8%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           +    ++    T L LA       +V+LLL  GAD+  +DK G  PL  A + GH +V +
Sbjct: 50  NCH-ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL H A + A     + TPL  A S  R EV  LLL+ GA+    N    + + +A + 
Sbjct: 109 LLLKHGACVNAMDLW-QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
                +       +              L+ AA     A VK  L +      Q + +  
Sbjct: 168 ELRERLTYEFKGHS--------------LLQAAREADLAKVKKTLALEIINFKQPQ-SHE 212

Query: 182 TALTLACFQG---RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           TAL  A       R +V  LLL + ANV  + K  +TPL  AA   + +V  VL   GA 
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272

Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
           +NA  + S   TAL  AA  GH +   LLLS G+   + + +G +   +         V+
Sbjct: 273 MNA--LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE-----AVQ 325

Query: 299 LLCKHGADIDSQDN 312
            +      + + D 
Sbjct: 326 QILSESTPMRTSDV 339

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  225 bits (577), Expect = 9e-69
 Identities = 67/298 (22%), Positives = 116/298 (38%), Gaps = 37/298 (12%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV ++ +      L  AC+ GH E+ ELLL  GA +   D   FTPL  AA+    +V  
Sbjct: 83  DVHAKDK-GGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL+H AD    +   K + + +A +    E +                  + L  A   
Sbjct: 142 LLLSHGADPTLVNCHGK-SAVDMAPTPELRERLTYEFKGH-----------SLLQAAREA 189

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA---VKLLLDMGSDINAQIET 178
               + K L             +   + L  A  + H       +LLL  G+++N + + 
Sbjct: 190 DLAKVKKTLALEIINFKQ---PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK- 245

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           +  T L +A  +  ++V+ +L    A +      G T L  AA  G+++  R+LL  G+D
Sbjct: 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305

Query: 239 VNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG 292
            +             TA  +  +      V+ +LS+   +   +      L  A+  G
Sbjct: 306 PSI------ISLQGFTAAQMGNEA-----VQQILSESTPMRTSDVDY--RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  154 bits (392), Expect = 3e-42
 Identities = 47/183 (25%), Positives = 69/183 (37%), Gaps = 4/183 (2%)

Query: 156 NGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLT 215
            G +A    L D  +      E  ++  L  A      ++++LL     N         T
Sbjct: 3   FGKSA--LDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKST 60

Query: 216 PLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE 275
           PL  AA    V + ++LL  GADV+A          L  A   GH    ELLL  GA V 
Sbjct: 61  PLHLAAGYNRVRIVQLLLQHGADVHA--KDKGGLVPLHNACSYGHYEVTELLLKHGACVN 118

Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
             +    +PL  AA+   + V  LL  HGAD    +    S +  A      + + +   
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 336 HVA 338
             +
Sbjct: 179 GHS 181

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  286 bits (734), Expect = 5e-93
 Identities = 74/297 (24%), Positives = 122/297 (41%), Gaps = 21/297 (7%)

Query: 17  LACAGGHEELVELLLSRGADIEHRDKK-----GFTPLILAATAGHDKVVDILLNHKADME 71
           +  +  H      L+ RG+ +   D K     G  P       G       LL++    +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
           A S+ +   P+  A   G    +  L+++G           +PL  A  GG+++ +K+LL
Sbjct: 56  AVSDWS---PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG 191
            HGA++N  T      +PL  A ++G    V LLL  G+ +    E++  + +  A  +G
Sbjct: 113 KHGAQVNGVT--ADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRG 168

Query: 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA 251
             E V+ L+    N++H+     TPL  A         + LL+ GADVN       +D+ 
Sbjct: 169 HVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQG---KGQDSP 225

Query: 252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
           L             LL+  GA  + KN +G  P+ L      L     L + GA + 
Sbjct: 226 LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  234 bits (600), Expect = 4e-73
 Identities = 64/233 (27%), Positives = 102/233 (43%), Gaps = 11/233 (4%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           + +  A   GH+  +  L+S+G  +        +PL  A   GH   V ILL H A +  
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120

Query: 73  QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
               T D  TPL  AC  G ++ V LLL  GA+ +  +    +P+  AA  G+V  +  L
Sbjct: 121 ---VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 176

Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
           + +G  I+ +       +PL LA  N   A VK LL+ G+D+N      +++ L      
Sbjct: 177 IAYGGNIDHKI--SHLGTPLYLACENQQRACVKKLLESGADVNQG--KGQDSPLHAVVRT 232

Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
              E+  LL+D  A+ + +   G  P+        +     L  +GA +  P 
Sbjct: 233 ASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ-LFLEREGASLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  219 bits (560), Expect = 4e-67
 Identities = 58/258 (22%), Positives = 101/258 (39%), Gaps = 19/258 (7%)

Query: 84  LACSGGRYEVVELLLTRGANKEHRNVSD-----YTPLSLAASGGYVNIIKLLLTHGAEIN 138
           +  S   +     L+ RG++    +          P       G       LL++    +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSL 198
           + +      SP+  AA++GH  +++ L+  G  +N     +  + L  AC  G    V +
Sbjct: 56  AVSDW----SPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKI 110

Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258
           LL   A V        TPL  A   G  +   +LL  GA V      S   + +  AA +
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE---SDLASPIHEAARR 167

Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           GH   V  L++ G  ++ K     +PL+LA      + V+ L + GAD++    +  S L
Sbjct: 168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPL 226

Query: 319 MAAFRKGHVKAVRWMVNH 336
            A  R    +    +++ 
Sbjct: 227 HAVVRTASEELACLLMDF 244

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  203 bits (520), Expect = 3e-61
 Identities = 58/206 (28%), Positives = 86/206 (41%), Gaps = 8/206 (3%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            V+  T  +H + L  AC GGH   V++LL  GA +        TPL  A  +G    V+
Sbjct: 84  AVNIITA-DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVN 142

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL H A ++ +S+    +P+  A   G  E V  L+  G N +H+     TPL LA   
Sbjct: 143 LLLQHGASVQPESD--LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 200

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
                +K LL  GA++N     K   SPL             LL+D G+D  A+      
Sbjct: 201 QQRACVKKLLESGADVNQ---GKGQDSPLHAVVRTASEELACLLMDFGADTQAK-NAEGK 256

Query: 182 TALTLACFQGRHEVVSLLLDRKANVE 207
             + L   +        L    A++ 
Sbjct: 257 RPVELVPPES-PLAQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  188 bits (480), Expect = 1e-55
 Identities = 53/230 (23%), Positives = 86/230 (37%), Gaps = 22/230 (9%)

Query: 117 LAASGGYVNIIKLLLTHGAEINSR---TGSKLGISPLMLAAMNGHTAAVKLLLDMGSDIN 173
           + +S  + +    L+  G+ + S     G   G  P       G       LL      +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 174 AQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL 233
           A    +  + +  A   G    +  L+ +   V       ++PL EA  GG++   ++LL
Sbjct: 56  A---VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 234 DKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
             GA VN             T L  A   G    V LLL  GA V+ ++    SP+  AA
Sbjct: 113 KHGAQVNG------VTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAA 165

Query: 290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
             GH+  V  L  +G +ID + +   + L  A        V+ ++   A 
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD 215

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  268 bits (688), Expect = 4e-86
 Identities = 91/291 (31%), Positives = 129/291 (44%), Gaps = 27/291 (9%)

Query: 41  DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR 100
             +    LI A       +V  LL   A++  Q E    TPL  A    R ++VELLL  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
           GA+   R  +  TP  LAA  G V ++KL L+ GA++N       G +  M AA+ G   
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD--FYGFTAFMEAAVYGKVK 119

Query: 161 AVKLLLDMGSDINAQIETNRN---------TALTLACFQGRHEVVSLLLDRK-ANVEHRA 210
           A+K L   G+++N + +T  +         TAL  A  +G  EV+ +LLD   A+V    
Sbjct: 120 ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 179

Query: 211 KTGLTPLMEAASGG----YVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCR 262
             G   L+ A           +  +LLD GADVN       R     T L +A +K H  
Sbjct: 180 NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV------RGERGKTPLILAVEKKHLG 233

Query: 263 FVELLLSK-GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
            V+ LL +   ++   +  G + L LA       + ELLCK GA  D  D 
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  210 bits (538), Expect = 5e-64
 Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 20/243 (8%)

Query: 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA 161
           A  E     D   L  A     V++++ LL  GA +N +   + G +PL  A        
Sbjct: 1   AAVE-----DNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDI 54

Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAA 221
           V+LLL  G+D   + + N  T   LA   G  +++ L L + A+V      G T  MEAA
Sbjct: 55  VELLLRHGADPVLRKK-NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113

Query: 222 SGGYVEVGRVLLDKGADVNA--------PPVPSSRDTALTIAADKGHCRFVELLLSK-GA 272
             G V+  + L  +GA+VN           +     TAL  AA+KGH   +++LL + GA
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 273 QVEVKNKKGNSPLWLAANGGHLS----VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
            V   +  G + L  A      S    +  LL  HGAD++ +  R  + L+ A  K H+ 
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 329 AVR 331
            V+
Sbjct: 234 LVQ 236

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  179 bits (456), Expect = 4e-52
 Identities = 62/208 (29%), Positives = 94/208 (45%), Gaps = 21/208 (10%)

Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
            +      L+ A  N     V+ LL+ G+++N Q E    T L  A    R ++V LLL 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAAD 257
             A+   R K G TP + AA  G V++ ++ L KGADVN        D    TA   AA 
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE------CDFYGFTAFMEAAV 114

Query: 258 KGHCRFVELLLSKGAQVEVKNK----------KGNSPLWLAANGGHLSVVELLCKH-GAD 306
            G  + ++ L  +GA V ++ K           G + L  AA  GH+ V+++L    GAD
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD 174

Query: 307 IDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
           +++ DN   + L+ A        V  + 
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAIT 202

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 88.3 bits (220), Expect = 1e-19
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKK-GNSPLWLAANGGHLSVVELLCKHGADI 307
           +  L  A        V+ LL  GA V  + ++ G +PL  A       +VELL +HGAD 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 308 DSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
             +     +  + A   G VK ++  ++  A
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 13  TALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
           T L LA    H  LV+ LL +   +I   D  G T L+LA      K+ ++L    A  +
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

Query: 72  AQ 73
             
Sbjct: 281 CG 282

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  270 bits (694), Expect = 7e-86
 Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 41/355 (11%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           +     + N    + +A   G  + V  L+  G     +++ G T L LA   G      
Sbjct: 12  NRIKSDDENM-EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAK 70

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
            L +          +    P+ LA    + ++V  L+     +         P SL    
Sbjct: 71  YLASVGEVHSLWHGQ---KPIHLAVMANKTDLVVALVEGAKER------GQMPESLLNEC 121

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG--HTAAVKLLLDMGSDINAQIETN 179
               + ++        + +     G + L      G  +   +K+L+ +G+   A+ +  
Sbjct: 122 DEREVNEIG------SHVKH--CKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK-A 172

Query: 180 RNTALTLACFQGRHEVVSLLLDRK-----ANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
             T L  A      E + L++D         +++  K G + L  A    + +V    ++
Sbjct: 173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232

Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN-------------KKG 281
            G DVN     +     L ++         + LL K     ++                 
Sbjct: 233 MGIDVNM--EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290

Query: 282 NSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
              +  AA+     V++LL +   ++    N      +   +K      R  +  
Sbjct: 291 LDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP 345

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  265 bits (679), Expect = 1e-83
 Identities = 64/338 (18%), Positives = 108/338 (31%), Gaps = 37/338 (10%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
               +      TAL LAC  G  +  + L S G         G  P+ LA  A    +V 
Sbjct: 45  SPTIQNR-FGCTALHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVV 101

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
            L+    +           P SL       EV E+    G++ +H      T L      
Sbjct: 102 ALVEGAKERGQ-------MPESLLNECDEREVNEI----GSHVKHCK--GQTALHWCVGL 148

Query: 122 G--YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM-----GSDINA 174
           G  Y+ +IK+L+  GA   ++   K   +PLM A    +  A+ L++D         ++ 
Sbjct: 149 GPEYLEMIKILVQLGASPTAKD--KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY 206

Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
             +   N+ L  A      +V    ++   +V         PL  +     V + + LL 
Sbjct: 207 ANK-QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ 265

Query: 235 KGADVNAPPVP-----------SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
           K         P                 +  AAD      ++LL  K  +V      G  
Sbjct: 266 KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAG 325

Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA 321
                      +V  +     A + ++   +      +
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  239 bits (612), Expect = 8e-74
 Identities = 49/330 (14%), Positives = 100/330 (30%), Gaps = 44/330 (13%)

Query: 29  LLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG 88
           +      +    D +    + +AA  G    V  L+        Q+     T L LAC  
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF-GCTALHLACKF 63

Query: 89  GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
           G  +  + L + G      +     P+ LA      +++  L+    E         G  
Sbjct: 64  GCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKER--------GQM 113

Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG--RHEVVSLLLDRKANV 206
           P  L          ++        + +      TAL      G    E++ +L+   A+ 
Sbjct: 114 PESLLNECDEREVNEI------GSHVK-HCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166

Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLD-----KGADVNAPPVPSSRD--TALTIAADKG 259
             + K   TPLM A      E   +++D         ++      ++   + L  A    
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYA----NKQGNSHLHWAILIN 222

Query: 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ--------- 310
                   +  G  V +++ +   PL+L+     + + + L +       Q         
Sbjct: 223 WEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTT 282

Query: 311 ----DNRKVSCLMAAFRKGHVKAVRWMVNH 336
                   +  + AA      + ++ +   
Sbjct: 283 VLPDRVVWLDFVPAAADPSKQEVLQLLQEK 312

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  225 bits (576), Expect = 2e-68
 Identities = 60/306 (19%), Positives = 104/306 (33%), Gaps = 35/306 (11%)

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +    K +     +      + +A   G+ + V  L+  G +   +N    T L LA   
Sbjct: 5   MTDFPKLNRIKSDDE-NMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
           G V+  K L + G   +   G      P+ LA M   T  V  L++   +          
Sbjct: 64  GCVDTAKYLASVGEVHSLWHGQ----KPIHLAVMANKTDLVVALVEGAKERG-------Q 112

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG--YVEVGRVLLDKGADV 239
              +L       EV       +     +   G T L      G  Y+E+ ++L+  GA  
Sbjct: 113 MPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166

Query: 240 NAPPVPSSRD----TALTIAADKGHCRFVELLL-----SKGAQVEVKNKKGNSPLWLAAN 290
            A      +D    T L  A +  +   ++L++         +++  NK+GNS L  A  
Sbjct: 167 TA------KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220

Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYI 350
                V     + G D++ +DN     L  + R   V   + ++     F          
Sbjct: 221 INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG 280

Query: 351 QTVNDK 356
            TV   
Sbjct: 281 TTVLPD 286

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  108 bits (273), Expect = 6e-26
 Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 18/143 (12%)

Query: 197 SLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TAL 252
           S+    K N        +  +  AA  G  +  R L++ G           ++    TAL
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI------QNRFGCTAL 57

Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
            +A   G     + L S G    + +  G  P+ LA       +V  L +   +      
Sbjct: 58  HLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQ--- 112

Query: 313 RKVSCLMAAFRKGHVKAVRWMVN 335
                          +      +
Sbjct: 113 ---MPESLLNECDEREVNEIGSH 132

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.0 bits (232), Expect = 1e-20
 Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 4/110 (3%)

Query: 229 GRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
           G +      +             + +AA KG    V  L+  G    ++N+ G + L LA
Sbjct: 3   GSMTDFPKLNRIK--SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60

Query: 289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
              G +   + L   G        +    +  A        V  +V    
Sbjct: 61  CKFGCVDTAKYLASVGEVHSLWHGQ--KPIHLAVMANKTDLVVALVEGAK 108

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  253 bits (648), Expect = 6e-80
 Identities = 71/308 (23%), Positives = 116/308 (37%), Gaps = 25/308 (8%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
               L    G E  +E  + +    + +   G    + A ++G  + V  LL   AD+  
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINY 68

Query: 73  QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
                 D  T L  AC     ++V+ L+  GAN    +   + PL  AAS GY++I + L
Sbjct: 69  A---NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
           ++ GA + +      G +PL +A        ++  ++           +   A       
Sbjct: 126 ISQGAHVGAVN--SEGDTPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKEEERI 176

Query: 191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD- 249
              +    L     N    AK+G T L  AA+ GY EV ++L+    DVN       +D 
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI------KDY 230

Query: 250 ---TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
              T L  AA  G      +L+     +E  NK G +   +A       + EL  K    
Sbjct: 231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLL 290

Query: 307 IDSQDNRK 314
              +  +K
Sbjct: 291 HSEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  233 bits (598), Expect = 2e-72
 Identities = 64/290 (22%), Positives = 115/290 (39%), Gaps = 13/290 (4%)

Query: 37  IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
           ++  D K      L    G +  ++  +  +   + + +         ACS G  E V  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD--DGAVFLAACSSGDTEEVLR 58

Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
           LL RGA+  + NV   T L  A     V+++K L+ +GA IN       G  PL  AA  
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD--NEGWIPLHAAASC 116

Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP 216
           G+    + L+  G+ + A   +  +T L +A  +   E++   ++R+             
Sbjct: 117 GYLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAA 169

Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
             E       +  + L     +        S  TAL +AA KG+   ++LL+     V +
Sbjct: 170 RKEEERIMLRDARQWLNSGHINDVRHA--KSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           K+  G +PL  AA+ G      +L ++  D+++ +    +    A     
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL 277

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  130 bits (329), Expect = 5e-34
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
            +     L  + G    +   + ++   + +   G    + A S G  E    LL++GAD
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGAD 65

Query: 239 VNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
           +N        +    TAL  A    +   V+ L+  GA +   + +G  PL  AA+ G+L
Sbjct: 66  INY------ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119

Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
            + E L   GA + + ++   + L  A  +   + ++  VN
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  255 bits (654), Expect = 7e-80
 Identities = 64/333 (19%), Positives = 122/333 (36%), Gaps = 39/333 (11%)

Query: 3   VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDI 62
             +E +             G++ L +   +        + +    L   A AG   + + 
Sbjct: 53  QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEP 111

Query: 63  LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLT--------RGANKEHRNVSDYTP 114
           +     ++         T L    S    E  E L+          GA+    +  + TP
Sbjct: 112 ITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP 169

Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD---MGSD 171
           L LA       ++  L+  GA+       K   S L  AA N     +  +L+   +  D
Sbjct: 170 LMLAVLARRRRLVAYLMKAGADPTIYN--KSERSALHQAAANRDFGMMVYMLNSTKLKGD 227

Query: 172 INAQIETNRNTALTLACFQGRHEVVS---LLLDRKANVEHRA--------KTGLTPLMEA 220
           I    + N  TAL +       + V+   LL+++ A V++            G T L  A
Sbjct: 228 IEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286

Query: 221 ASGGYVEVGRVLL-DKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVE 275
           A    + + + L+ +KG++ +       +D    T + +AA +G    V  L+ +GA VE
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDK------QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 340

Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
             +   ++   LA    H ++V++  +   + +
Sbjct: 341 AVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  209 bits (534), Expect = 3e-62
 Identities = 64/332 (19%), Positives = 115/332 (34%), Gaps = 48/332 (14%)

Query: 32  SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY 91
            +              L+ A+  G+ K     L H +            P       G  
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL----------YPNPQGYGNGND 74

Query: 92  EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
            + +   T               L   A+ G   I + +      I      +   + L 
Sbjct: 75  FLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID---PRHNRTVLH 130

Query: 152 LAAMNGHTAAVKLLL--------DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK 203
             A N      + L+          G+D+NA  + + NT L LA    R  +V+ L+   
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMKAG 189

Query: 204 ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK---GADVNAPPVPSSRD----TALTIAA 256
           A+     K+  + L +AA+     +   +L+      D+         D    TAL I A
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE------LDRNGMTALMIVA 243

Query: 257 DKGH---CRFVELLLSKGAQV--------EVKNKKGNSPLWLAANGGHLSVVELLCKH-G 304
                      +LL+ KGA+V        + +  KG + L  AA   ++ +V+ L    G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           ++ D QD    + +M A ++G ++ V +++  
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 335

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  136 bits (345), Expect = 1e-35
 Identities = 33/201 (16%), Positives = 55/201 (27%), Gaps = 22/201 (10%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
               L+ A+ +G+    +  L                        G   +          
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
                      L   A+G    +   +  +  ++  P       T L   A        E
Sbjct: 87  PTEPEPESPIKLHTEAAG-SYAITEPITRESVNIIDP---RHNRTVLHWIASNSSAEKSE 142

Query: 266 LLL--------SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSC 317
            L+        + GA V   +   N+PL LA       +V  L K GAD    +  + S 
Sbjct: 143 DLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA 202

Query: 318 LMAAFRKGHVKAVRWMVNHVA 338
           L  A        + +M+N   
Sbjct: 203 LHQAAANRDFGMMVYMLNSTK 223

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  243 bits (623), Expect = 2e-76
 Identities = 42/298 (14%), Positives = 88/298 (29%), Gaps = 19/298 (6%)

Query: 17  LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSER 76
                   + ++  LS   D    D  G +    A    + ++V  LLN  A        
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--- 60

Query: 77  TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
             + PL  A +    ++V++LL  G +    +    T L  A   G +  +KL +     
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR 120

Query: 137 INSRTGSKLGIS-PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEV 195
           +      K G       A M    + V   L               + + +    G  ++
Sbjct: 121 LMFYG--KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDM 176

Query: 196 VSLLLDRKANVEHRAKTGLTP-LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTI 254
           + LLLD   +          P +  A     +E+ + L     ++          +A   
Sbjct: 177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY---------SANLE 227

Query: 255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
                     ++++ K  + +  +   +  +        +       +       + N
Sbjct: 228 NVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  213 bits (546), Expect = 4e-65
 Identities = 53/282 (18%), Positives = 98/282 (34%), Gaps = 23/282 (8%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           D        H +A   A A  +  LV  LL+ GA     +     PL  AAT    K+V 
Sbjct: 23  DTFKADVHGH-SASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVK 79

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDY-TPLSLAAS 120
           ILL    D     ++  +T L  A   G  + V+L + +         + + T    A  
Sbjct: 80  ILLFSGLDDSQFDDK-GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVM 138

Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
              V+I+   L+            + +S + +   NGH   + LLLD  +  N       
Sbjct: 139 LNDVSIVSYFLSEIPSTFDL---AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195

Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
              + LA      E++  L     N+        +  +E       E+ +++++K  +  
Sbjct: 196 IPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYK 248

Query: 241 APPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
           +     ++D  +              ++SK  ++ +      
Sbjct: 249 S--DSYTKDLDIVKNNKLDE------IISKNKELRLMYVNCV 282

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  190 bits (484), Expect = 4e-56
 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 19/226 (8%)

Query: 117 LAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
              +      +K  L    +         G S    A  + +   V  LL+ G+  N   
Sbjct: 5   SRINTWKSKQLKSFL-SSKDTFKAD--VHGHSASYYAIADNNVRLVCTLLNAGALKNLL- 60

Query: 177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKG 236
                  L  A      ++V +LL    +       G T L  A   G ++  ++ + K 
Sbjct: 61  --ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118

Query: 237 ADVNAPPVPSSRD-----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG 291
             +               T+   A        V   LS+            S + +    
Sbjct: 119 WRLMF------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKN 171

Query: 292 GHLSVVELLCKHGADIDSQDNR-KVSCLMAAFRKGHVKAVRWMVNH 336
           GH+ ++ LL  +    ++ ++   +  +  A     ++ ++ +  +
Sbjct: 172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  138 bits (351), Expect = 3e-37
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 6/154 (3%)

Query: 186 LACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP 245
                 + + +   L    +       G +    A +   V +   LL+ GA  N     
Sbjct: 5   SRINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL---- 59

Query: 246 SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
              +  L  AA     + V++LL  G      + KGN+ L+ A + G++  V+L  K   
Sbjct: 60  LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119

Query: 306 DIDSQDNR-KVSCLMAAFRKGHVKAVRWMVNHVA 338
            +         +    A     V  V + ++ + 
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP 153

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  239 bits (613), Expect = 1e-75
 Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 3/230 (1%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
             +  A   G  E    L+  G D+   DK+  T L  AA      +V   ++  A ++ 
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
                  TPL  A   G   +V  L+  GA+    +    + + LAA  G+ +I+  L+ 
Sbjct: 71  LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA 130

Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTA-AVKLLLDMGSDINAQIETNRNTALTLACFQG 191
            G +++     + G++PLM AA   H+    +LLL     +N   + ++NTAL  A   G
Sbjct: 131 KGQDVDMMD--QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
              V+SLLL+  ANV+ +   G + L  A     V +   L +       
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  230 bits (590), Expect = 3e-72
 Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 5/234 (2%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
             +  A   G YE    L+  G +    +  + T L  AA    ++++K  ++ GA ++ 
Sbjct: 11  WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
             G  L  +PL  A   GH + V  L+  G+D +   +    + + LA   G   +V+ L
Sbjct: 71  L-GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYL 128

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGY-VEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258
           + +  +V+   + G+TPLM AA   + V+  R+LL     VN       ++TAL  A   
Sbjct: 129 IAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD-KYHKNTALHWAVLA 187

Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
           G+   + LLL  GA V+ +N KG S L LA    ++ ++  L +        DN
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG-YDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  212 bits (543), Expect = 3e-65
 Identities = 56/242 (23%), Positives = 99/242 (40%), Gaps = 14/242 (5%)

Query: 103 NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV 162
           +  H +      +  A   G     + L+  G ++      K  ++ L  AA+N     V
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPD--KENVTLLHWAAINNRIDLV 58

Query: 163 KLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAAS 222
           K  +  G+ ++       +T L  A  QG   +V  L+   A+       G + +  AA 
Sbjct: 59  KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118

Query: 223 GGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCR-FVELLLSKGAQVEVK 277
            G+  +   L+ KG DV+        D    T L  AA + H      LLL+    V + 
Sbjct: 119 FGHTSIVAYLIAKGQDVDM------MDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 278 NKK-GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           +K   N+ L  A   G+ +V+ LL + GA++D+Q+ +  S L  A ++ +V  +  +   
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

Query: 337 VA 338
             
Sbjct: 233 RQ 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  166 bits (424), Expect = 5e-48
 Identities = 46/175 (26%), Positives = 68/175 (38%), Gaps = 5/175 (2%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            VD      + T L  A   GH  +V  L+  GAD    D +G + + LAA  GH  +V 
Sbjct: 67  IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

Query: 62  ILLNHKADMEAQSERTKDTPLSLACS-GGRYEVVELLLTRGANKEHRNVSD-YTPLSLAA 119
            L+    D++   +    TPL  A       +   LLLT   +    +     T L  A 
Sbjct: 127 YLIAKGQDVDMMDQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV 185

Query: 120 SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
             G   +I LLL  GA ++++     G S L LA    +   +  L +       
Sbjct: 186 LAGNTTVISLLLEAGANVDAQN--IKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  239 bits (612), Expect = 8e-75
 Identities = 62/287 (21%), Positives = 88/287 (30%), Gaps = 26/287 (9%)

Query: 37  IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD--TPLSLACSGGRYEVV 94
             +  + G T L LA    H+  +D LL   A  E    +     T L LA   G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 95  ELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP----- 149
           E L   GA         +T L LA          +LL                       
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 150 -------LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
                   + +  N          D    + A+   + +T L +A      E+V LL D 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 203 KANVEHRAKT-GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAAD 257
            A++     T G TPL  A       V  +LL  GAD  A      R     T L  A  
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA------RMYGGRTPLGSALL 234

Query: 258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
           + +     LL + GA          SP   + +       +   ++ 
Sbjct: 235 RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  170 bits (433), Expect = 7e-49
 Identities = 45/228 (19%), Positives = 67/228 (29%), Gaps = 25/228 (10%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            V    E    TAL LAC         +LL             +       T        
Sbjct: 70  GVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT-------- 120

Query: 62  ILLNHKADMEAQSERTKDTPLSLACS-GGRYEVVELLLTRGANKEHRNVSDYTPLSLAAS 120
                          T   P ++        E            E  N   +TPL +A  
Sbjct: 121 -------------PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167

Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
                +++LL   GA++N       G +PL LA      + ++LLL  G+D  A+     
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEP-TCGRTPLHLAVEAQAASVLELLLKAGADPTAR-MYGG 225

Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
            T L  A  +    +  LL    A         L+P   + S    + 
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  161 bits (409), Expect = 2e-45
 Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 2/164 (1%)

Query: 4   DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
           D   +++H  A   +      E           +E  +  G TPL +A      ++V +L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 64  LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
            +  AD+         TPL LA       V+ELLL  GA+   R     TPL  A     
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237

Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
             + +LL  HGA           +SP   +  +  +       +
Sbjct: 238 PILARLLRAHGAPEPEDG--GDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  101 bits (253), Expect = 6e-24
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 5/99 (5%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           D++    +   T L LA       ++ELLL  GAD   R   G TPL  A    +  +  
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242

Query: 62  ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLL 98
           +L  H A          D  +P S + S    +  +   
Sbjct: 243 LLRAHGAPEPE---DGGDKLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 86.8 bits (216), Expect = 4e-19
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 250 TALTIAADKGHCRFVELLLSKGA---QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           TAL +A    H  F++ LL   A    ++++N  G + L LAA  G  S VE L   GA 
Sbjct: 11  TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 307 IDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           +   +    + L  A R         ++    
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRP 102

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD---IDSQDNRKVSCLMAAFRKGHVKAV 330
                + G++ L LA    H   ++ L    A    +D Q++   + L  A   G    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 331 RWMVNH 336
             +   
Sbjct: 62  EKLYAA 67

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  230 bits (589), Expect = 4e-72
 Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 6/228 (2%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           +PL  A   G  ++  +L+  GAN +  +    TPL  AA   ++  +K L+  GA ++ 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSL 198
           +     G + L LAA  GH   V+ LL  G  D+N Q +    T +  A      ++V L
Sbjct: 73  KD--AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ-DDGGWTPMIWATEYKHVDLVKL 129

Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258
           LL + +++  R       L  AA  G V++  +LL    D++A  V    D+ L IAA +
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA--VNIHGDSPLHIAARE 187

Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
                V L LS+ + V +KNK+G +PL  A+    +     + K   D
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  223 bits (570), Expect = 2e-69
 Identities = 66/240 (27%), Positives = 115/240 (47%), Gaps = 10/240 (4%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           +   E ++   + L  A   GH ++  +L+  GA+I+   +   TPL+ AA   H + V 
Sbjct: 3   NFKMEHQNKR-SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 62  ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLA 118
            L+   A ++    +  +  T L LA   G YEVV+ LL+ G  +   ++   +TP+  A
Sbjct: 62  YLIKAGALVDP---KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET 178
               +V+++KLLL+ G++IN R         L  AA +G     ++LL    D++A    
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRD--NEENICLHWAAFSGCVDIAEILLAAKCDLHAV-NI 175

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           + ++ L +A  + R++ V L L R ++V  + K G TPL  A+    V     +     D
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  213 bits (546), Expect = 1e-65
 Identities = 69/242 (28%), Positives = 114/242 (47%), Gaps = 14/242 (5%)

Query: 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA 161
            N +  + +  +PL  AA  G+V+I  +L+  GA I++ +  +   +PLM AA N H  A
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCS--EDQRTPLMEAAENNHLEA 59

Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA-NVEHRAKTGLTPLMEA 220
           VK L+  G+ ++ + +   +T L LA  +G +EVV  LL     +V  +   G TP++ A
Sbjct: 60  VKYLIKAGALVDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

Query: 221 ASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEV 276
               +V++ ++LL KG+D+N       RD      L  AA  G     E+LL+    +  
Sbjct: 119 TEYKHVDLVKLLLSKGSDINI------RDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            N  G+SPL +AA       V L     +D+  ++    + L  A     V +   M   
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232

Query: 337 VA 338
           + 
Sbjct: 233 LQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 96.3 bits (241), Expect = 8e-23
 Identities = 28/90 (31%), Positives = 49/90 (54%)

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           + L  AA+ GH     +L+  GA ++  ++   +PL  AA   HL  V+ L K GA +D 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72

Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
           +D    +CL  A +KGH + V++++++   
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQM 102

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  219 bits (560), Expect = 1e-67
 Identities = 60/278 (21%), Positives = 106/278 (38%), Gaps = 36/278 (12%)

Query: 36  DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVE 95
           D+  R   GFTPL++A+ +G                           +         V+ 
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGL---------------------ETGNSEEEEDAPAVIS 40

Query: 96  LLLTRGANKE-HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAA 154
             + +GA+     + +  T L LAA     +  K LL   A+ N +    +G +PL  A 
Sbjct: 41  DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD--NMGRTPLHAAV 98

Query: 155 MNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213
                   ++L+    +D++A+   +  T L LA       ++  L++  A+V      G
Sbjct: 99  SADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157

Query: 214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLS 269
            + L  AA+   V+   VLL  GA+ +       ++    T L +AA +G     ++LL 
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSYETAKVLLD 211

Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307
             A  ++ +     P  +A    H  +V LL       
Sbjct: 212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  205 bits (524), Expect = 2e-62
 Identities = 58/233 (24%), Positives = 92/233 (39%), Gaps = 6/233 (2%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIE-HRDKKGFTPLILAATAGHDKVVDILLNHKA 68
                           ++   + +GA +    D+ G T L LAA          LL   A
Sbjct: 22  GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA 81

Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNII 127
           D   Q    + TPL  A S     V ++L+   A + + R     TPL LAA      ++
Sbjct: 82  DANIQDNMGR-TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGML 140

Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLA 187
           + L+   A++N+     LG S L  AA   +  A  +LL  G++ + Q      T L LA
Sbjct: 141 EDLINSHADVNAVD--DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLA 197

Query: 188 CFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             +G +E   +LLD  AN +        P   A    + ++ R+L  +    +
Sbjct: 198 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  183 bits (468), Expect = 4e-54
 Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 9/207 (4%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            + ++T+   +TAL LA      +  + LL   AD   +D  G TPL  A +A    V  
Sbjct: 48  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107

Query: 62  ILLNHKA-DMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
           IL+ ++A D++A   R  D  TPL LA       ++E L+   A+    +    + L  A
Sbjct: 108 ILIRNRATDLDA---RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164

Query: 119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET 178
           A+   V+   +LL +GA  + +       +PL LAA  G     K+LLD  ++ +     
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGSYETAKVLLDHFANRDITDH- 221

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKAN 205
                  +A  +  H++V LL     +
Sbjct: 222 MDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  157 bits (400), Expect = 2e-44
 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 4/164 (2%)

Query: 13  TALTLACAGGHEELVELLLSRGA-DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
           T L  A +   + + ++L+   A D++ R   G TPLILAA    + +++ L+N  AD+ 
Sbjct: 92  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 151

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
           A  +  K + L  A +    +   +LL  GANK+ +N  + TPL LAA  G     K+LL
Sbjct: 152 AVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL 210

Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
            H A  +      +   P  +A    H   V+LL       +  
Sbjct: 211 DHFANRDITD--HMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.8 bits (250), Expect = 7e-24
 Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           +AL  A A  + +   +LL  GA+ + ++ +  TPL LAA  G  +   +LL+H A+ + 
Sbjct: 159 SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
                +  P  +A     +++V LL     +  H +
Sbjct: 219 TDHMDR-LPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.4 bits (215), Expect = 3e-19
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 23/135 (17%)

Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
           +V  R   G TPLM A+  G                                ++     +
Sbjct: 2   DVNVRGPDGFTPLMIASCSG----------------------GGLETGNSEEEEDAPAVI 39

Query: 265 ELLLSKGAQVE-VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
              + +GA +    ++ G + L LAA        + L +  AD + QDN   + L AA  
Sbjct: 40  SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99

Query: 324 KGHVKAVRWMVNHVA 338
                  + ++ + A
Sbjct: 100 ADAQGVFQILIRNRA 114

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  212 bits (543), Expect = 3e-65
 Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 46/273 (16%)

Query: 41  DKKGFTPLILAATAGHDKVVDILLN----HKADMEAQSERTKDTPLSLACSGGRYEVVEL 96
           D+ G TPL +A   G+   V  L+N       +++  +   + TPL LA       VV L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRL 64

Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE----INSRTGSKLGISPLML 152
           L+T GA+    +    T   LA        ++ LL   A     + +R     G++ L +
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN--YDGLTALHV 122

Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT 212
           A        V+LLL+ G+DI+A    +  + L  A       +V LLL   ANV  +  +
Sbjct: 123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G + L  A+  G + +                                   V  L+  GA
Sbjct: 183 GSSALHSASGRGLLPL-----------------------------------VRTLVRSGA 207

Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
              +KN   ++PL +A +   + ++       A
Sbjct: 208 DSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  210 bits (538), Expect = 2e-64
 Identities = 67/236 (28%), Positives = 106/236 (44%), Gaps = 15/236 (6%)

Query: 12  DTALTLACAGGHEELVELLLSR----GADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
           DT L +A   G+   V  L++     G +++  +    TPL LA       VV +L+   
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 68  ADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGA----NKEHRNVSDYTPLSLAASG 121
           A   A     +   T   LAC       +  LL   A    + E RN    T L +A + 
Sbjct: 70  ASPMA---LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
                ++LLL  GA+I++    K G SPL+ A  N   + V+LLL  G+++NAQ+  + +
Sbjct: 127 ECQETVQLLLERGADIDAVD-IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY-SGS 184

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
           +AL  A  +G   +V  L+   A+   +     TPLM A S   +++ R    + A
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  200 bits (511), Expect = 1e-60
 Identities = 67/233 (28%), Positives = 105/233 (45%), Gaps = 12/233 (5%)

Query: 112 YTPLSLAASGGYVNIIKLLL----THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
            TPL +A   G +  +  L+      G E++      L  +PL LA +    + V+LL+ 
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN--NLRQTPLHLAVITTLPSVVRLLVT 67

Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA----NVEHRAKTGLTPLMEAASG 223
            G+   A    +  TA  LAC       +  LLD  A    ++E R   GLT L  A + 
Sbjct: 68  AGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126

Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
              E  ++LL++GAD++A  + S R + L  A +      V+LLL  GA V  +   G+S
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGR-SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 185

Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            L  A+  G L +V  L + GAD   ++    + LM A  +  +  +R     
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  190 bits (486), Expect = 5e-57
 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 8/208 (3%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           ++D    +   T L LA       +V LL++ GA     D+ G T   LA        + 
Sbjct: 38  ELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLR 96

Query: 62  ILLNHKADMEAQ-SERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSL 117
            LL+  A        R  D  T L +A +    E V+LLL RGA+ +  ++    +PL  
Sbjct: 97  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156

Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
           A     +++++LLL HGA +N++     G S L  A+  G    V+ L+  G+D + +  
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQM--YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214

Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKAN 205
            + +T L +A  +   +++     R A+
Sbjct: 215 -HNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  107 bits (271), Expect = 1e-26
 Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 10/136 (7%)

Query: 211 KTGLTPLMEAASGGYVEVGRVLLD----KGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
           + G TPL  A   G +     L++     G +++     + R T L +A        V L
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRL 64

Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA----DIDSQDNRKVSCLMAAF 322
           L++ GA     ++ G +   LA      + +  L    A    D+++++   ++ L  A 
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124

Query: 323 RKGHVKAVRWMVNHVA 338
                + V+ ++   A
Sbjct: 125 NTECQETVQLLLERGA 140

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 88.7 bits (221), Expect = 5e-20
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 249 DTALTIAADKGHCRFVELLLS----KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
           DT L IA  +G+   V  L++     G ++++ N    +PL LA      SVV LL   G
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69

Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD 343
           A   + D    +    A        +R +++  A    D
Sbjct: 70  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD 108

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  206 bits (528), Expect = 3e-63
 Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 6/224 (2%)

Query: 21  GGHEELVELLLSRGADIE-HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD 79
           G    ++   + +GA +    D+ G T L LAA          LL   AD   Q      
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN-MGR 59

Query: 80  TPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
           TPL  A S     V ++L+   A + + R     TPL LAA      +++ L+   A++N
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119

Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSL 198
           +     LG S L  AA   +  A  +LL  G++ + Q      T L LA  +G +E   +
Sbjct: 120 AVD--DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKV 176

Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAP 242
           LLD  AN +        P   A    + ++ R+L +     +  
Sbjct: 177 LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ 220

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  201 bits (515), Expect = 2e-61
 Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 15/231 (6%)

Query: 88  GGRYEVVELLLTRGANKE-HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG 146
           G    V+   + +GA+     + +  T L LAA     +  K LL   A+ N +    +G
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD--NMG 58

Query: 147 ISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
            +PL  A         ++L+    +D++A+   +  T L LA       ++  L++  A+
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVEGMLEDLINSHAD 117

Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHC 261
           V      G + L  AA+   V+   VLL  GA+ +       ++    T L +AA +G  
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------QNNREETPLFLAAREGSY 171

Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
              ++LL   A  ++ +     P  +A    H  +V LL ++      Q +
Sbjct: 172 ETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  186 bits (475), Expect = 1e-55
 Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 9/209 (4%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            + ++T+   +TAL LA      +  + LL   AD   +D  G TPL  A +A    V  
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 75

Query: 62  ILLNHKA-DMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA 118
           IL+ ++A D++A   R  D  TPL LA       ++E L+   A+    +    + L  A
Sbjct: 76  ILIRNRATDLDA---RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 132

Query: 119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET 178
           A+   V+   +LL +GA  + +       +PL LAA  G     K+LLD  ++ +     
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQN--NREETPLFLAAREGSYETAKVLLDHFANRDITDH- 189

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVE 207
                  +A  +  H++V LL +      
Sbjct: 190 MDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  183 bits (468), Expect = 1e-54
 Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 13/221 (5%)

Query: 121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR 180
           G    +I   +  GA ++++T  + G + L LAA    + A K LL+  +D N Q +   
Sbjct: 1   GDAPAVISDFIYQGASLHNQTD-RTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMG 58

Query: 181 NTALTLACFQGRHEVVSLLLDRKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
            T L  A       V  +L+  +A +++ R   G TPL+ AA      +   L++  ADV
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118

Query: 240 NAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS 295
           NA       D    +AL  AA   +     +LL  GA  +++N +  +PL+LAA  G   
Sbjct: 119 NA------VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 172

Query: 296 VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
             ++L  H A+ D  D+        A  + H   VR +  +
Sbjct: 173 TAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  123 bits (311), Expect = 2e-32
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 12/154 (7%)

Query: 191 GRHEVVSLLLDRKANVEHRA-KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
               V+S  + + A++ ++  +TG T L  AA     +  + LL+  AD N       +D
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI------QD 55

Query: 250 ----TALTIAADKGHCRFVELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
               T L  A         ++L+   A  ++ +   G +PL LAA      ++E L    
Sbjct: 56  NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH 115

Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           AD+++ D+   S L  A    +V A   ++ + A
Sbjct: 116 ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  201 bits (515), Expect = 2e-61
 Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 10/222 (4%)

Query: 13  TALTLACAGGH-EELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
             L  AC      ++ ELL S+ + +  +D+ G  PL  + +    ++   LL+   ++ 
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 72  AQSERTKD--TPLSLACSGGRYEVVELLLTR--GANKEHRNVSDYTPLSLAASGGYVNII 127
                     TP  +ACS G  EVV+ L  R    +         T L LA    +  + 
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVS 123

Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTL 186
           + L+ +GA +  +   K    PL  AA  G    ++LL  +G S +N Q +    T L  
Sbjct: 124 QFLIENGASVRIKD--KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ-DKQGWTPLFH 180

Query: 187 ACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVE 227
           A  +G  +   LL+++  A  +     G      A +    +
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  193 bits (493), Expect = 3e-58
 Identities = 59/227 (25%), Positives = 92/227 (40%), Gaps = 19/227 (8%)

Query: 113 TPLSLAASGGYVNII-KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
            PL  A        + +LL +  + +  +   + G  PL  +           LL    +
Sbjct: 4   YPLHQACMENEFFKVQELLHSKPSLLLQKD--QDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 172 INAQIETNRN--TALTLACFQGRHEVVSLLLDR--KANVEHRAKTGLTPLMEAASGGYVE 227
           +N     + +  T   +AC  G  EVV  L DR  K ++      G+T L  A    + E
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 228 VGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKG-AQVEVKNKKGN 282
           V + L++ GA V        +D      L  AA  G  + +ELL   G + V  ++K+G 
Sbjct: 122 VSQFLIENGASVRI------KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW 175

Query: 283 SPLWLAANGGHLSVVELL-CKHGADIDSQDNRKVSCLMAAFRKGHVK 328
           +PL+ A   GH     LL  K+GA+ D  DN+       A  +   K
Sbjct: 176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 222

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  189 bits (482), Expect = 1e-56
 Identities = 59/269 (21%), Positives = 94/269 (34%), Gaps = 52/269 (19%)

Query: 44  GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
              PL  A                                        +V ELL ++ + 
Sbjct: 2   SNYPLHQACMENEFF---------------------------------KVQELLHSKPSL 28

Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSR-TGSKLGISPLMLAAMNGHTAAV 162
              ++     PL  + S     I   LL+    +N        G +P  +A   G+   V
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV 88

Query: 163 KLLLD--MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
           K L D  +  D+N        T L LA  +   EV   L++  A+V  + K    PL  A
Sbjct: 89  KSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA 147

Query: 221 ASGGYVEVGRVLLDKG-ADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSK-GAQV 274
           AS G +++  +L   G + VN       +D    T L  A  +GH     LL+ K GA+ 
Sbjct: 148 ASVGSLKLIELLCGLGKSAVNW------QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY 201

Query: 275 EVKNKKGNSPLWLAANGGHLSVVELLCKH 303
           ++ + KG     +A    +  V +    +
Sbjct: 202 DLVDNKGAKAEDVAL---NEQVKKFFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  142 bits (360), Expect = 5e-39
 Identities = 38/160 (23%), Positives = 62/160 (38%), Gaps = 4/160 (2%)

Query: 181 NTALTLACFQGRH-EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
           N  L  AC +    +V  LL  + + +  + + G  PL  + S    E+   LL K  +V
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 240 NAPPVPS-SRDTALTIAADKGHCRFVELLLSK--GAQVEVKNKKGNSPLWLAANGGHLSV 296
           N    P  S  T   IA   G+   V+ L  +     +     +G + L LA       V
Sbjct: 63  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122

Query: 297 VELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            + L ++GA +  +D      L  A   G +K +  +   
Sbjct: 123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (288), Expect = 3e-29
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 10/125 (8%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH-KADME 71
           T L LA      E+ + L+  GA +  +DK    PL  AA+ G  K++++L    K+ + 
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168

Query: 72  AQSERTKD--TPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTPLSLAASGGYVNIIK 128
            Q    K   TPL  A + G  +   LL+ + GA  +  +        +A +     + K
Sbjct: 169 WQ---DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKK 222

Query: 129 LLLTH 133
             L +
Sbjct: 223 FFLNN 227

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  103 bits (260), Expect = 3e-25
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 16/136 (11%)

Query: 213 GLTPLMEAAS-GGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELL 267
              PL +A     + +V  +L  K + +        +D      L  +           L
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ------KDQDGRIPLHWSVSFQAHEITSFL 55

Query: 268 LSKGAQVEVKNKK---GNSPLWLAANGGHLSVVELLCKH--GADIDSQDNRKVSCLMAAF 322
           LSK   V + +     G +P  +A + G+L VV+ L       D++   N+ V+CL  A 
Sbjct: 56  LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAV 115

Query: 323 RKGHVKAVRWMVNHVA 338
            K   +  ++++ + A
Sbjct: 116 GKKWFEVSQFLIENGA 131

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  190 bits (486), Expect = 7e-58
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 7/169 (4%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
            +  ++    A G    +   + +   I H D++GFTPL+ AA  G   VV+ LL + AD
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 70  MEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNII 127
            +      K   + LSLACS G  ++V++LL  G +    + +  TPL  A  G +V  +
Sbjct: 62  PQLL---GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCV 118

Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQI 176
           K+LL  GA+    T    G + + LA   G+ +  +++      +   I
Sbjct: 119 KMLLESGADPTIET--DSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  183 bits (468), Expect = 2e-55
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 11/171 (6%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
               +   A  G    +   ++  + IN   +    T L  A   G+  VV  LL   A+
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHC 261
            +   K   + L  A S GY ++ ++LLD G DVN        D    T L  A    H 
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE------YDWNGGTPLLYAVHGNHV 115

Query: 262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
           + V++LL  GA   ++   G + + LA   G+ SV +++  H   +     
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  174 bits (443), Expect = 1e-51
 Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
             +   A+ G +  +   +     IN     + G +PLM AA +G  A V+ LL  G+D 
Sbjct: 5   LSVHQLAAQGEMLYLATRIEQENVINHTD--EEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
               +  R +AL+LAC +G  ++V +LLD   +V      G TPL+ A  G +V+  ++L
Sbjct: 63  QLLGK-GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 233 LDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKK 280
           L+ GAD        +     ++ +A   G+    +++ S   ++    K+
Sbjct: 122 LESGADPTI----ETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  164 bits (418), Expect = 4e-48
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
             + ++     QG    ++  ++++  + H  + G TPLM AA+ G + V   LL  GAD
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
                +   R++AL++A  KG+   V++LL  G  V   +  G +PL  A +G H+  V+
Sbjct: 62  PQL--LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

Query: 299 LLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           +L + GAD   + +   + +  A   G+    + + +H+ 
Sbjct: 120 MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 87.8 bits (219), Expect = 2e-20
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV+ E + N  T L  A  G H + V++LL  GAD       G+  + LA   G+  V  
Sbjct: 94  DVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQ 152

Query: 62  ILLNHKADMEAQSERTKD 79
           ++ +H   +       K+
Sbjct: 153 VIESHLLKLLQN---IKE 167

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  190 bits (485), Expect = 9e-57
 Identities = 47/249 (18%), Positives = 80/249 (32%), Gaps = 24/249 (9%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
               +    GH           AD+     +  TP   AA    ++ +  LL    D++A
Sbjct: 17  MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL-EDRDVDA 72

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYVNIIKLLL 131
             E  + T L      G  + V LL   GA+ +HR++    T L +AA      +++ L+
Sbjct: 73  VDENGR-TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG 191
             GA+I      + G++ L LA     T      +  G  I  +    +   +       
Sbjct: 132 ELGADIEVED--ERGLTALELAREILKTTPKGNPMQFGRRIGLE----KVINVLEGQVFE 185

Query: 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA 251
             EV  ++  R          G             +   V     A+  A       +  
Sbjct: 186 YAEVDEIVEKRGK--------GKDVEYLVRWKDGGDCEWVKGVHVAEDVA----KDYEDG 233

Query: 252 LTIAADKGH 260
           L  A  +  
Sbjct: 234 LEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  188 bits (480), Expect = 5e-56
 Identities = 46/284 (16%), Positives = 85/284 (29%), Gaps = 41/284 (14%)

Query: 44  GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
           G    I+ +    +                          +    G            A+
Sbjct: 1   GEVNKIIGSRTAGEGA--------------------MEYLIEWKDGHSPSWVPSSYIAAD 40

Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK 163
                    TP   AA       +  LL    ++++    + G + L+  A  G    V+
Sbjct: 41  V---VSEYETPWWTAARKADEQALSQLL-EDRDVDAVD--ENGRTALLFVAGLGSDKCVR 94

Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG 223
           LL + G+D++ +      TAL +A    R EVV  L++  A++E   + GLT L  A   
Sbjct: 95  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154

Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
                    +  G  +    V       +       +    E++  +G         G  
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKV-----INVLEGQVFEYAEVDEIVEKRGK--------GKD 201

Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327
             +L           +   H A+  ++D      L  A  +  +
Sbjct: 202 VEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  167 bits (424), Expect = 5e-48
 Identities = 45/221 (20%), Positives = 77/221 (34%), Gaps = 17/221 (7%)

Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
           +  S ++T    A     E+ +  LL    D++  D+ G T L+  A  G DK V +L  
Sbjct: 40  DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98

Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
             AD++ +  R   T L +A    R EVVE L+  GA+ E  +    T L LA       
Sbjct: 99  AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158

Query: 126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
                +  G  I         +  ++   +  +    +++   G                
Sbjct: 159 PKGNPMQFGRRIGLE-----KVINVLEGQVFEYAEVDEIVEKRGKG---------KDVEY 204

Query: 186 LACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
           L  ++   +   +     A     AK     L  A +   +
Sbjct: 205 LVRWKDGGDCEWVKGVHVAEDV--AKDYEDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  156 bits (398), Expect = 3e-44
 Identities = 49/252 (19%), Positives = 84/252 (33%), Gaps = 35/252 (13%)

Query: 92  EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
           EV +++ +R A +            +    G+           A++ S        +P  
Sbjct: 2   EVNKIIGSRTAGE------GAMEYLIEWKDGHSPSWVPSSYIAADVVSE-----YETPWW 50

Query: 152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR-A 210
            AA      A+  LL+   D++A  + N  TAL      G  + V LL +  A+++HR  
Sbjct: 51  TAARKADEQALSQLLE-DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108

Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVEL 266
           + GLT L  AA     EV   L++ GAD+         D    TAL +A +         
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGADIEV------EDERGLTALELAREILKTTPKGN 162

Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
            +  G ++     +    +       +            +I  +  +          K  
Sbjct: 163 PMQFGRRI---GLEKVINVLEGQVFEY--------AEVDEIVEKRGKGKDVEYLVRWKDG 211

Query: 327 VKAVRWMVNHVA 338
                    HVA
Sbjct: 212 GDCEWVKGVHVA 223

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  182 bits (465), Expect = 7e-55
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 13  TALTLACAGGHEELVELLLSRGAD-IEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
            ++    A G  + ++  L +G + +   D++GFTPLI A+  G  + V  LL   AD  
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 72  AQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
                 K+  + LSLA +GG  ++V LLL R  +    + +  TPL  A  G +V  ++ 
Sbjct: 64  IL---AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
           LL  GA++ +      G +P+ LA   G+    +++ +    +   
Sbjct: 121 LLARGADLTTEA--DSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  182 bits (465), Expect = 9e-55
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 3/173 (1%)

Query: 44  GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
               +   A  G    +   L    ++  + +    TPL  A + G  E V  LL  GA+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK 163
                    + LSLA++GGY +I+ LLL    +IN       G +PL+ A    H   V+
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIY--DWNGGTPLLYAVRGNHVKCVE 119

Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP 216
            LL  G+D+  + + +  T + LA   G  +V  ++ +    +         P
Sbjct: 120 ALLARGADLTTEAD-SGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  180 bits (460), Expect = 5e-54
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 12/169 (7%)

Query: 149 PLMLAAMNGHTAAVKLLLDMGSD-INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
            +   A  G    +K  L  G + +N   +    T L  A   G  E V  LL+  A+  
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEWGADPH 63

Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF 263
             AK   + L  A++GGY ++  +LL++  D+N        D    T L  A    H + 
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINI------YDWNGGTPLLYAVRGNHVKC 117

Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
           VE LL++GA +  +   G +P+ LA   G+  V +++  H   +   + 
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  177 bits (452), Expect = 6e-53
 Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 10/177 (5%)

Query: 111 DYTPLSLAASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
           D   +   A+ G ++ +K  L  G   +N     + G +PL+ A+  G    V+ LL+ G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP--DERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 170 SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVG 229
           +D +      R +AL+LA   G  ++V LLL+R  ++      G TPL+ A  G +V+  
Sbjct: 60  ADPHIL-AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCV 118

Query: 230 RVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
             LL +GAD+       +    T + +A   G+ +  +++ +   ++   N     P
Sbjct: 119 EALLARGADLTT----EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  161 bits (409), Expect = 1e-46
 Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 3/159 (1%)

Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRA-KTGLTPLMEAASGGYVEVGRVLLDKGADV 239
           + ++     QG  + +   L +  N+ ++  + G TPL+ A++ G +E  R LL+ GAD 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 240 NAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
           +   +   R++AL++A+  G+   V LLL +   + + +  G +PL  A  G H+  VE 
Sbjct: 63  HI--LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120

Query: 300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           L   GAD+ ++ +   + +  A   G+ K  + + NH+ 
Sbjct: 121 LLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  154 bits (391), Expect = 4e-44
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 3/140 (2%)

Query: 4   DSETESNHD--TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           +   + +    T L  A A G  E V  LL  GAD     K+  + L LA+T G+  +V 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL    D+         TPL  A  G   + VE LL RGA+      S YTP+ LA + 
Sbjct: 87  LLLERDVDINIYDW-NGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL 145

Query: 122 GYVNIIKLLLTHGAEINSRT 141
           GY  + +++  H  ++    
Sbjct: 146 GYRKVQQVIENHILKLFQSN 165

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  125 bits (316), Expect = 1e-33
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 6/115 (5%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           D     +   ++AL+LA  GG+ ++V LLL R  DI   D  G TPL+ A    H K V+
Sbjct: 61  DPHILAK-ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

Query: 62  ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP 114
            LL   AD+  +        TP+ LA + G  +V +++          N+    P
Sbjct: 120 ALLARGADLTTE---ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 52.4 bits (127), Expect = 3e-08
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 281 GNSPLWLAANGGHLSVVELLCKHGAD-IDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  +   A  G L  ++   + G + ++  D R  + L+ A   G ++ VR+++  
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW 58

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  182 bits (465), Expect = 3e-54
 Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 10/218 (4%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
                +  A         + L     DI +      T      + G   ++      +  
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
                  + D PL  A   G    +   L         + +  T L  A  GG+ +I+++
Sbjct: 71  ------ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 130 LLTH-GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLAC 188
           L T    E+N +   KLG + L  AA  G+   V+LLL  G+  + +    +  A  +A 
Sbjct: 125 LFTQPNIELNQQN--KLGDTALHAAAWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMAT 181

Query: 189 FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
                 ++       A              ++    + 
Sbjct: 182 NAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  182 bits (463), Expect = 6e-54
 Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 11/217 (5%)

Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
              +  A           L     +I   T   +  +        G T  +         
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYIT--DMSDTNWWKGTSKGRTGLIPSNYVAEQA 70

Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRV 231
            +       +  L  A  +G    +   LD +  V    K G T L  A  GG+ ++  +
Sbjct: 71  ES------IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEM 124

Query: 232 LLDK-GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
           L  +   ++N        DTAL  AA KG+   V+LLL+KGA+ +++N +      +A N
Sbjct: 125 LFTQPNIELNQ--QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182

Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV 327
               S+++      A     +         +  + H 
Sbjct: 183 AACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  175 bits (445), Expect = 2e-51
 Identities = 43/222 (19%), Positives = 77/222 (34%), Gaps = 12/222 (5%)

Query: 40  RDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLT 99
             K G   +  A      +  D L   + D+   ++   DT      S GR  ++     
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDM-SDTNWWKGTSKGRTGLIP---- 62

Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
                  +  S   PL  AA  G ++ ++  L +   +N     K G + L  A   GH 
Sbjct: 63  -SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD--KAGSTALYWACHGGHK 119

Query: 160 AAVKLLLD-MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLM 218
             V++L      ++N Q +   +TAL  A ++G  ++V LLL + A  + R         
Sbjct: 120 DIVEMLFTQPNIELNQQNK-LGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD 178

Query: 219 EAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
            A +     + +      A        +        +  + H
Sbjct: 179 MATNAACASLLKKKQGTDAVRTL--SNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  161 bits (409), Expect = 3e-46
 Identities = 48/201 (23%), Positives = 73/201 (36%), Gaps = 17/201 (8%)

Query: 143 SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
            K G   +  A           L     DI    +   +T       +GR  ++      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTGLI-----P 62

Query: 203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADK 258
              V  +A++   PL EAA  G +   R  LD    VN        D    TAL  A   
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG------LDKAGSTALYWACHG 116

Query: 259 GHCRFVELLLSK-GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSC 317
           GH   VE+L ++   ++  +NK G++ L  AA  G+  +V+LL   GA  D ++  K   
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA 176

Query: 318 LMAAFRKGHVKAVRWMVNHVA 338
              A        ++      A
Sbjct: 177 FDMATNAACASLLKKKQGTDA 197

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  147 bits (373), Expect = 5e-41
 Identities = 34/154 (22%), Positives = 59/154 (38%), Gaps = 4/154 (2%)

Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
           E   + D  L  A   G+   +   L     +   DK G T L  A   GH  +V++L  
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127

Query: 66  HK-ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
               ++  Q++   DT L  A   G  ++V+LLL +GA  + RN+       +A +    
Sbjct: 128 QPNIELNQQNKL-GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA 186

Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
           +++K      A       +         + +  H
Sbjct: 187 SLLKKKQGTDAVRTLS--NAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (287), Expect = 4e-29
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 2/114 (1%)

Query: 13  TALTLACAGGHEELVELLLS-RGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
           TAL  AC GGH+++VE+L +    ++  ++K G T L  AA  G+  +V +LL   A  +
Sbjct: 108 TALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
            ++   K     +A +     +++      A +   N  DY     +    + +
Sbjct: 168 LRNIE-KKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  183 bits (466), Expect = 3e-54
 Identities = 57/233 (24%), Positives = 86/233 (36%), Gaps = 14/233 (6%)

Query: 104 KEHRNVSDYTPLSLAASGGY----VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
           K+       + L LA         + +I+ +    A +N +    L  +PL LA +    
Sbjct: 1   KQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN--NLQQTPLHLAVITNQP 58

Query: 160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN------VEHRAKTG 213
              + LL  G D   + +   NT L LAC QG    V +L            ++     G
Sbjct: 59  EIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117

Query: 214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ 273
            T L  A+  GY+ +  +L+  GADVNA   P +  TAL +A D  +   V LLL  GA 
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176

Query: 274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           V     +G SP  L        + + L +   +                    
Sbjct: 177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  176 bits (448), Expect = 2e-51
 Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 11/236 (4%)

Query: 38  EHRDKKGFTPLILAATAGHDK----VVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV 93
           +   + G + L LA           V+  +    A +  Q+   + TPL LA    + E+
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ-TPLHLAVITNQPEI 60

Query: 94  VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTG----SKLGISP 149
            E LL  G + E R+    TPL LA   G +  + +L       +  +     +  G + 
Sbjct: 61  AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           L LA+++G+   V+LL+ +G+D+NAQ   N  TAL LA      ++VSLLL   A+V   
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV 180

Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
              G +P           + + L     +       S  +   +   +     F E
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES--EDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  155 bits (395), Expect = 6e-44
 Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 10/200 (5%)

Query: 146 GISPLMLAAMNGHTAA----VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
           G S L LA ++   A     ++ +    + +N Q    + T L LA    + E+   LL 
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLG 66

Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAAD 257
              + E R   G TPL  A   G +    VL       +   +  + +    T L +A+ 
Sbjct: 67  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126

Query: 258 KGHCRFVELLLSKGAQVEVKNKK-GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
            G+   VELL+S GA V  +    G + L LA +  +  +V LL K GAD++    +  S
Sbjct: 127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186

Query: 317 CLMAAFRKGHVKAVRWMVNH 336
                + +   +  + +   
Sbjct: 187 PYQLTWGRPSTRIQQQLGQL 206

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  133 bits (337), Expect = 8e-36
 Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 8/154 (5%)

Query: 12  DTALTLACAGGHEELVELLLSRGAD------IEHRDKKGFTPLILAATAGHDKVVDILLN 65
           +T L LAC  G    V +L            ++  +  G T L LA+  G+  +V++L++
Sbjct: 79  NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138

Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
             AD+ AQ      T L LA      ++V LLL  GA+        Y+P  L        
Sbjct: 139 LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR 198

Query: 126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
           I + L     E                   +  T
Sbjct: 199 IQQQLGQLTLENLQMLPE--SEDEESYDTESEFT 230

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 249 DTALTIAADKGH----CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
           D+ L +A            +  +    A +  +N    +PL LA       + E L   G
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68

Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEM 346
            D + +D R  + L  A  +G + +V  +            +
Sbjct: 69  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL 110

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  181 bits (463), Expect = 4e-54
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 35/226 (15%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
             L  A      +V E+L       +  +    TPL++A     + I K L+  GA+IN 
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSL 198
           +  + +  SP + A   G T  +  +L     D+N         AL  A  +G  + V L
Sbjct: 68  Q--NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH-NRYGGNALIPAAEKGHIDNVKL 124

Query: 199 LLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD 257
           LL+  + +++ +   G T L+EA                                    +
Sbjct: 125 LLEDGREDIDFQNDFGYTALIEAVGLR------------------------------EGN 154

Query: 258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
           + +   V+LL+  GA   +K+  G + +  A   G+  + ++L ++
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  181 bits (461), Expect = 7e-54
 Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 11/195 (5%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
             L  A     +++ E+L      ++  D +G TPL +A      ++   L++  AD+  
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
           Q+    D+P   A + GR E++  +L     +    N      L  AA  G+++ +KLLL
Sbjct: 68  QNSI-SDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126

Query: 132 THG-AEINSRTGSKLGISPLMLAAM-----NGHTAAVKLLLDMGSDINAQIETNRNTALT 185
             G  +I+ +     G + L+ A         +   VKLL++ G+D + + + +  TA+ 
Sbjct: 127 EDGREDIDFQN--DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK-DNSGRTAMD 183

Query: 186 LACFQGRHEVVSLLL 200
            A  +G  E+  +L 
Sbjct: 184 YANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  168 bits (427), Expect = 6e-49
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 18/202 (8%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
             + L  A         ++L D    ++   +T  NT L +A      E+   L+DR A+
Sbjct: 6   VGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGAD 64

Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA-DVNAPPVPSSRD----TALTIAADKGH 260
           +  +     +P + A + G  E+   +L     D+N        +     AL  AA+KGH
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK------HNRYGGNALIPAAEKGH 118

Query: 261 CRFVELLLSKG-AQVEVKNKKGNSPLWLAA-----NGGHLSVVELLCKHGADIDSQDNRK 314
              V+LLL  G   ++ +N  G + L  A      N  +  +V+LL ++GAD   +DN  
Sbjct: 119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG 178

Query: 315 VSCLMAAFRKGHVKAVRWMVNH 336
            + +  A +KG+ +  + +  +
Sbjct: 179 RTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  138 bits (351), Expect = 3e-38
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 9/165 (5%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
                L  A  +   +V  +L D    V+     G TPL  A     +E+ + L+D+GAD
Sbjct: 5   EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64

Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVV 297
           +N     S  D+    A  +G    +  +L      +   N+ G + L  AA  GH+  V
Sbjct: 65  INL--QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 298 ELLCKHG-ADIDSQDNRKVSCLMAA-----FRKGHVKAVRWMVNH 336
           +LL + G  DID Q++   + L+ A       + +   V+ ++ +
Sbjct: 123 KLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN 167

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  121 bits (305), Expect = 8e-32
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 9/139 (6%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGA-DIEHRDKKGFTPLILAATAGHDKVV 60
           D++    S  D+    A A G  E++  +L     D+   ++ G   LI AA  GH   V
Sbjct: 64  DIN-LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 61  DILLNH-KADMEAQSERTKDTPLSLAC-----SGGRYEVVELLLTRGANKEHRNVSDYTP 114
            +LL   + D++ Q+     T L  A      +    ++V+LL+  GA++  ++ S  T 
Sbjct: 123 KLLLEDGREDIDFQN-DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTA 181

Query: 115 LSLAASGGYVNIIKLLLTH 133
           +  A   GY  I K+L  +
Sbjct: 182 MDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 95.6 bits (239), Expect = 7e-23
 Identities = 22/89 (24%), Positives = 43/89 (48%)

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
             L  A  +   +  E+L     QV+  + +GN+PL +A +   + + + L   GADI+ 
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           Q++   S  + A  +G  + + +M+ H  
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHAT 96

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.9 bits (162), Expect = 1e-12
 Identities = 10/61 (16%), Positives = 22/61 (36%)

Query: 276 VKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
           +K  +  + L  A       V E+L      +D  D    + L  A     ++  + +++
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 336 H 336
            
Sbjct: 61  R 61

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  182 bits (463), Expect = 7e-54
 Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
           ++     LA +G  +EL E +L+  +     D+   T L  A +AGH ++V+ LL     
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
           +  + +    +PL +A S G  E+V+ LL +GA+    N +  TPL  AAS     I  +
Sbjct: 66  VNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124

Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
           LL  GA  +++       + +  AA  G+   V +LL   +  N Q +T  NT L LAC 
Sbjct: 125 LLEGGANPDAK--DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACD 181

Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
           + R E    L+ + A++    K   TPL  A   G + +    L +G + +
Sbjct: 182 EERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  178 bits (452), Expect = 3e-52
 Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 7/229 (3%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
              +LA SG   E+ E +L   +     +    T L  A S G+  I++ LL  G  +N 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           +     G SPL +AA  G    VK LL  G+ +NA    N  T L  A  + RHE+  +L
Sbjct: 69  KD--DAGWSPLHIAASAGXDEIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVML 125

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG 259
           L+  AN + +     T +  AA+ G +++  +LL   A  N     +  +T L +A D+ 
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD--TEGNTPLHLACDEE 183

Query: 260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
                + L+++GA + ++NK+  +PL +A   G L ++      G +  
Sbjct: 184 RVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  163 bits (413), Expect = 9e-47
 Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 7/229 (3%)

Query: 108 NVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
            VS+    +LA SG    + + +L   +        +   + L  A   GHT  V+ LL 
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTD--QDSRTALHWACSAGHTEIVEFLLQ 61

Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE 227
           +G  +N + +    + L +A   G  E+V  LL + A+V    + G TPL  AAS    E
Sbjct: 62  LGVPVNDKDD-AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWL 287
           +  +LL+ GA+ +A        TA+  AA KG+ + V +LL   A   +++ +GN+PL L
Sbjct: 121 IAVMLLEGGANPDAKD--HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178

Query: 288 AANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           A +   +   + L   GA I  ++  + + L  A  KG +  +   +  
Sbjct: 179 ACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  144 bits (364), Expect = 9e-40
 Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 3/194 (1%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
            I    LA         + +L   S      + +  TAL  AC  G  E+V  LL     
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
           V  +   G +PL  AAS G  E+ + LL KGA VNA     +  T L  AA K       
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVN--QNGCTPLHYAASKNRHEIAV 123

Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG 325
           +LL  GA  + K+    + +  AA  G+L +V +L  + A  + QD    + L  A  + 
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

Query: 326 HVKAVRWMVNHVAQ 339
            V+  +++V   A 
Sbjct: 184 RVEEAKFLVTQGAS 197

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  124 bits (312), Expect = 1e-32
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 10/166 (6%)

Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
            +      LA      E+   +L  K+      +   T L  A S G+ E+   LL  G 
Sbjct: 5   VSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV 64

Query: 238 DVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH 293
            VN       +D    + L IAA  G    V+ LL KGA V   N+ G +PL  AA+   
Sbjct: 65  PVND------KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

Query: 294 LSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
             +  +L + GA+ D++D+   + +  A  KG++K V  ++ + A 
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  102 bits (256), Expect = 6e-25
 Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 3/134 (2%)

Query: 5   SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
           +    N  T L  A +    E+  +LL  GA+ + +D    T +  AA  G+ K+V ILL
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159

Query: 65  NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
            +KA    Q      TPL LAC   R E  + L+T+GA+    N  + TPL +A   G +
Sbjct: 160 FYKASTNIQDTEGN-TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGL 216

Query: 125 NIIKLLLTHGAEIN 138
            +I   L  G E +
Sbjct: 217 GLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 10/60 (16%), Positives = 19/60 (31%)

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
                     LA +G    + E +    +     D    + L  A   GH + V +++  
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  177 bits (450), Expect = 7e-52
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 9/222 (4%)

Query: 41  DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR 100
           +  G   L         K     + H   ++          L  +   G +++V+ ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLP--LALLLDSSLEGEFDLVQRIIYE 59

Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
             +    N    T L  A   G+  I+K L+  G  +N+      G +PL  AA   +  
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD--SDGWTPLHCAASCNNVQ 117

Query: 161 AVKLLLDMGSDINAQIETNRNTALTL--ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLM 218
             K L++ G+ + A   ++  TA        +G  +    L   +  +    K  +  L 
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177

Query: 219 EAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
           +       E   + + +G  +         +     A     
Sbjct: 178 DYEPQNDDE---LPMKEGDCMTIIHREDEDEIEWWWARLNDK 216

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  171 bits (436), Expect = 1e-49
 Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 9/215 (4%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
            +L         +     ++ G  ++  +      L+ ++  G   +V  ++    D   
Sbjct: 7   VSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS- 64

Query: 73  QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
                 +  T L  A   G  E+V+ L+  G N    +   +TPL  AAS   V + K L
Sbjct: 65  --LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 131 LTHGAEINSRTGS-KLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
           +  GA + + T S     +        G+T   + L  +   +          AL     
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM-NKGVIYALWDYEP 181

Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG 224
           Q   E + +       + HR          A    
Sbjct: 182 QNDDE-LPMKEGDCMTIIHREDEDEIEWWWARLND 215

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  171 bits (435), Expect = 1e-49
 Identities = 43/224 (19%), Positives = 74/224 (33%), Gaps = 20/224 (8%)

Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
              L               + HG  +     + L ++ L+ +++ G    V+ ++    D
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRV 231
            +   +    TAL  A   G  E+V  L+    NV      G TPL  AAS   V+V + 
Sbjct: 63  PSLPND-EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKF 121

Query: 232 LLDKGADVNAP-PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
           L++ GA V A                ++G+ +  + L     ++ + NK     LW    
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP 181

Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
                  EL  K G  +                +     + W  
Sbjct: 182 QNDD---ELPMKEGDCMT------------IIHREDEDEIEWWW 210

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  162 bits (412), Expect = 2e-46
 Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 15/188 (7%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
           G   L               +  G  +           L  +  +G  ++V  ++    +
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHC 261
                  G+T L  A   G+ E+ + L+  G +VNA       D    T L  AA   + 
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA------ADSDGWTPLHCAASCNNV 116

Query: 262 RFVELLLSKGAQVEVKNKKGN---SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           +  + L+  GA V           +        G+    + L      +   +   +  L
Sbjct: 117 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

Query: 319 MAAFRKGH 326
                +  
Sbjct: 177 WDYEPQND 184

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  152 bits (386), Expect = 1e-42
 Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 13/176 (7%)

Query: 4   DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
             +        L  +   G  +LV+ ++    D    + +G T L  A  AGH ++V  L
Sbjct: 30  RVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 89

Query: 64  LNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSD---YTPLSLA 118
           +    ++ A      D  TPL  A S    +V + L+  GA       SD          
Sbjct: 90  VQFGVNVNAA---DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146

Query: 119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
              GY    + L     ++      K  I  L            +L +  G  +  
Sbjct: 147 MEEGYTQCSQFLYGVQEKMGIMN--KGVIYALWDYEPQNDD---ELPMKEGDCMTI 197

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  136 bits (346), Expect = 4e-37
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 10/163 (6%)

Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
             +L         +  S  +     V+      L  L++++  G  ++ + ++ +  D +
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS 64

Query: 241 APPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
            P    + +  TAL  A   GH   V+ L+  G  V   +  G +PL  AA+  ++ V +
Sbjct: 65  LP----NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 299 LLCKHGADI---DSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
            L + GA +      D +  +       +G+ +  +++     
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  125 bits (315), Expect = 9e-33
 Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 3/128 (2%)

Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270
            TG   L         + G   +  G  V   P        L  ++ +G    V+ ++ +
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP---LPLALLLDSSLEGEFDLVQRIIYE 59

Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
                + N +G + L  A   GH  +V+ L + G ++++ D+   + L  A    +V+  
Sbjct: 60  VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC 119

Query: 331 RWMVNHVA 338
           +++V   A
Sbjct: 120 KFLVESGA 127

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  122 bits (309), Expect = 5e-32
 Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 5/148 (3%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           TAL  A   GH E+V+ L+  G ++   D  G+TPL  AA+  + +V   L+   A + A
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

Query: 73  QSERTKDTPLSL--ACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
            +     T          G  +  + L          N      L         N  +L 
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE---PQNDDELP 188

Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGH 158
           +  G  +               A +N  
Sbjct: 189 MKEGDCMTIIHREDEDEIEWWWARLNDK 216

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  180 bits (457), Expect = 3e-51
 Identities = 48/311 (15%), Positives = 94/311 (30%), Gaps = 43/311 (13%)

Query: 10  NHDTALTLACAGGHE---ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
             +    +A   G     + + LLL+    ++    + +    LAA  GH  V++ L   
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 67  KADMEAQSERTKD-TPLSLACSGGRYEVVELLLTRGANKEHRNV--SDYTPLSLAASG-G 122
                    + ++     LA   G   V+  L      +    +   +Y     AA G G
Sbjct: 151 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210

Query: 123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNT 182
           + N+I  LL     +             +     G       +    + +        + 
Sbjct: 211 HHNVINFLLDCPVMLAY---------AEIHEFEYGEKYVNPFIARHVNRLKEM-----HD 256

Query: 183 ALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG---YVEVGRVL-----LD 234
           A  L+   G  ++V+         +     G   L           ++  R L     + 
Sbjct: 257 AFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIK 307

Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
             A      +P   +  L +A   G+     LLLS  + + +         ++   GG L
Sbjct: 308 ALAPTAT--IPGDANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRL 362

Query: 295 SVVELLCKHGA 305
            +  +  +H  
Sbjct: 363 DLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  176 bits (447), Expect = 6e-50
 Identities = 52/357 (14%), Positives = 95/357 (26%), Gaps = 45/357 (12%)

Query: 8   ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
                  L+L     ++E + + L    ++E   +     L+    A +++    L +  
Sbjct: 32  HFISANELSLM-TLSYKEAIHIFLPGTKNMEQVRQ-----LLCLYYAHYNRNAKQLWSDA 85

Query: 68  ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNII 127
                +SE          CS    + + LLLT     +     +Y    LAA  G+++++
Sbjct: 86  HKKGIKSEVICFVAAITGCSSA-LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVL 144

Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDIN-AQIETNRNTALTL 186
             L                     LAA NGH   +  L ++      A I+     A   
Sbjct: 145 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 204

Query: 187 ACFQ-GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA---- 241
           A    G H V++ LLD    +           +     G   V   +      +      
Sbjct: 205 AAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARHVNRLKEMHDA 257

Query: 242 --------------PPVPSSRDTALTIAADKGHCRFVELL--------LSKGAQVEVKNK 279
                                   L     +     ++ +        +   A       
Sbjct: 258 FKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG 317

Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
             N  L LA   G+     LL    + +                 G +      + H
Sbjct: 318 DANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAVALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  108 bits (272), Expect = 6e-26
 Identities = 29/231 (12%), Positives = 62/231 (26%), Gaps = 45/231 (19%)

Query: 8   ESNHDTALTLACAGGHEELVELLLSRGADIEHRD--KKGFTPLILAATA-GHDKVVDILL 64
           ++ +  A  LA   GH  ++  L              + +     AA   GH  V++ LL
Sbjct: 160 QAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLL 219

Query: 65  NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN---------------- 108
           +    +                  G   V   +       +  +                
Sbjct: 220 DCPVMLAYAE--------IHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271

Query: 109 ----VSDYTPLSLAASGGYVNIIKLL--------LTHGAEINSRTGSKLGISPLMLAAMN 156
               +  +  L          ++  +        +   A   +  G       L LA   
Sbjct: 272 KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD--ANELLRLALRL 329

Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           G+  A  LLL +     + +   +     +    GR ++ ++ L+   +  
Sbjct: 330 GNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAVALEHHHHHH 376

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  172 bits (439), Expect = 6e-51
 Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 10/188 (5%)

Query: 142 GSKLGISPLMLAAMNGHTAAVKLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSLLL 200
           GS   +  +      G+  AV+L LD   +D+N   + +  + L  AC +GR  VV +L+
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLI 59

Query: 201 DRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
            R A +    +   TPL  AAS G+ ++ + LL   AD+NA  V    +  L  A   G 
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQ 117

Query: 261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMA 320
            +  E L++ GA V + NK G  P+  A       + E   K G +++            
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP------YKD 171

Query: 321 AFRKGHVK 328
            F KG  +
Sbjct: 172 TFWKGTTR 179

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  169 bits (432), Expect = 6e-50
 Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 11/184 (5%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGA-DIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
                +   C  G+   V L L     D+   D  GF+PL  A   G   VV++L+   A
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
            +   +    DTPL LA S G  ++V+ LL   A+    N     PL  A   G   + +
Sbjct: 64  RINVMNRG-DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAE 122

Query: 129 LLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLAC 188
            L+ +GA ++     K G  P+  A         +    MG ++N               
Sbjct: 123 DLVANGALVSICN--KYGEMPVDKAKAPLRELLRERAEKMGQNLNR-------IPYKDTF 173

Query: 189 FQGR 192
           ++G 
Sbjct: 174 WKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  157 bits (400), Expect = 2e-45
 Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 11/185 (5%)

Query: 41  DKKGFTPLILAATAGHDKVVDILLNHKA-DMEAQSERTKDTPLSLACSGGRYEVVELLLT 99
             +    +      G+   V + L++   D+    +    +PL  AC  GR  VVE+L+ 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDH-GFSPLHWACREGRSAVVEMLIM 60

Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
           RGA     N  D TPL LAAS G+ +I++ LL + A+IN+    + G  PL  A   G  
Sbjct: 61  RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN--EHGNVPLHYACFWGQD 118

Query: 160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLME 219
              + L+  G+ ++          +  A    R  +         N+         P  +
Sbjct: 119 QVAEDLVANGALVSIC-NKYGEMPVDKAKAPLRELLRERAEKMGQNLNR------IPYKD 171

Query: 220 AASGG 224
               G
Sbjct: 172 TFWKG 176

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  151 bits (384), Expect = 4e-43
 Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           + L  AC  G   +VE+L+ RGA I   ++   TPL LAA+ GH  +V  LL +KAD+ A
Sbjct: 41  SPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
            +E   + PL  AC  G+ +V E L+  GA     N     P+  A +     + +    
Sbjct: 101 VNEH-GNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159

Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHT 159
            G  +N          P       G T
Sbjct: 160 MGQNLNRI--------PYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  143 bits (364), Expect = 3e-40
 Identities = 41/161 (25%), Positives = 58/161 (36%), Gaps = 3/161 (1%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKAN-VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
                +   C +G    V L LD   N +      G +PL  A   G   V  +L+ +GA
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVV 297
            +N   +    DT L +AA  GH   V+ LL   A +   N+ GN PL  A   G   V 
Sbjct: 64  RINV--MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121

Query: 298 ELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           E L  +GA +   +      +  A                 
Sbjct: 122 EDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 278 NKKGNSPLWLAANGGHLSVVELLCKHGA-DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           + +    ++     G+   V L   +   D++  D+   S L  A R+G    V  ++  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  139 bits (353), Expect = 4e-38
 Identities = 48/246 (19%), Positives = 89/246 (36%), Gaps = 53/246 (21%)

Query: 113 TPLSLAASGGYVNII-KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
           +PL LAA    V  + KLL   G E++ R    +G + L +AA+  +  A  +L++   +
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRG--AMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRV 231
           +  +  T+                                 G T L  A     V + R 
Sbjct: 63  LVFEPMTSEL-----------------------------YEGQTALHIAVINQNVNLVRA 93

Query: 232 LLDKGADVNA-----------PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK 280
           LL +GA V+A             +    +  L+ AA  G    V LL+  GA +  ++  
Sbjct: 94  LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSL 153

Query: 281 GNSPLWLAANGGHLSVV----ELLCKHGADID------SQDNRKVSCLMAAFRKGHVKAV 330
           GN+ L +     + +       LL  +             +N+ ++    A  +G++   
Sbjct: 154 GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213

Query: 331 RWMVNH 336
           + ++  
Sbjct: 214 QHLMQK 219

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 281 GNSPLWLAANGGHL-SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
             SPL LAA    + ++ +LL   G ++  +     + L  A    +++A   ++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  166 bits (424), Expect = 1e-48
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 13/201 (6%)

Query: 34  GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV 93
           G+ +   DK G     +      ++ +D L N++            TPL +AC  G    
Sbjct: 1   GSHM---DKNGEIVEKIKDEKSINQNLDFLRNYRDS-------YNRTPLMVACMLGMENA 50

Query: 94  VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLA 153
           ++ L+      E +++   T L  A     + I + LL+ G+ +N++     G +PLM +
Sbjct: 51  IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK--DFSGKTPLMWS 108

Query: 154 AMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG 213
            + G++     LL+ G+++N +      T L +A   GR E+V  LL+  A++  R  TG
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG 167

Query: 214 LTPLMEAASGGYVEVGRVLLD 234
           LT    A   G  EV ++  +
Sbjct: 168 LTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  166 bits (424), Expect = 1e-48
 Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 10/195 (5%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
           N +    +       + ++ L        +RD    TPL++A   G +  +D L+ +   
Sbjct: 7   NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLVENFDK 60

Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
           +E +      T L  A    R  + E LL++G+N   ++ S  TPL  +   GY  +   
Sbjct: 61  LEDKDIE-GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119

Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
           LL HGA +N R  +  G +PL++A+  G +  VK LL++G+DI+A+ +    TA   A  
Sbjct: 120 LLEHGANVNDR--NLEGETPLIVASKYGRSEIVKKLLELGADISAR-DLTGLTAEASARI 176

Query: 190 QGRHEVVSLLLDRKA 204
            GR EV+ +  + + 
Sbjct: 177 FGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  163 bits (415), Expect = 3e-47
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 22/209 (10%)

Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
           G++    + +      +         +  L       N R       +PLM+A M G   
Sbjct: 1   GSHM---DKNGEIVEKIKDEKSINQNLDFL------RNYRD--SYNRTPLMVACMLGMEN 49

Query: 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
           A+  L++    +  + +   +TAL  A    R  +   LL + +NV  +  +G TPLM +
Sbjct: 50  AIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108

Query: 221 ASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEV 276
              GY E+   LL+ GA+VN       R+    T L +A+  G    V+ LL  GA +  
Sbjct: 109 IIFGYSEMSYFLLEHGANVND------RNLEGETPLIVASKYGRSEIVKKLLELGADISA 162

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGA 305
           ++  G +    A   G   V+++  +   
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  154 bits (393), Expect = 3e-44
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 22/201 (10%)

Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
           G+ ++     K G     +         +  L       N +      T L +AC  G  
Sbjct: 1   GSHMD-----KNGEIVEKIKDEKSINQNLDFL------RNYRDS-YNRTPLMVACMLGME 48

Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD---- 249
             +  L++    +E +   G T L+ A     + +   LL KG++VN       +D    
Sbjct: 49  NAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT------KDFSGK 102

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           T L  +   G+      LL  GA V  +N +G +PL +A+  G   +V+ L + GADI +
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA 162

Query: 310 QDNRKVSCLMAAFRKGHVKAV 330
           +D   ++   +A   G  + +
Sbjct: 163 RDLTGLTAEASARIFGRQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  124 bits (315), Expect = 3e-33
 Identities = 34/167 (20%), Positives = 68/167 (40%), Gaps = 16/167 (9%)

Query: 174 AQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL 233
           + ++ N      +   +  ++ +  L + + +         TPLM A   G       L+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDS------YNRTPLMVACMLGMENAIDKLV 55

Query: 234 DKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
           +    +        +D    TAL  A         E LLSKG+ V  K+  G +PL  + 
Sbjct: 56  ENFDKLED------KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI 109

Query: 290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
             G+  +   L +HGA+++ ++    + L+ A + G  + V+ ++  
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 90.5 bits (226), Expect = 4e-21
 Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 8/128 (6%)

Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270
           K G             +    L +               T L +A   G    ++ L+  
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRNYRDS--------YNRTPLMVACMLGMENAIDKLVEN 57

Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
             ++E K+ +G++ L  A     L + E L   G++++++D    + LM +   G+ +  
Sbjct: 58  FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

Query: 331 RWMVNHVA 338
            +++ H A
Sbjct: 118 YFLLEHGA 125

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  162 bits (413), Expect = 2e-47
 Identities = 56/165 (33%), Positives = 92/165 (55%), Gaps = 3/165 (1%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
                  S+    L  A   G ++ V +L++ GAD+   D  G+TPL LAA  GH ++V+
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVE 64

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL + AD+ A       TPL LA   G  E+VE+LL  GA+    ++  +TPL LAA  
Sbjct: 65  VLLKNGADVNAVDH-AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF 123

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
           G++ I+++LL +GA++N++   K G +   ++  NG+    ++L 
Sbjct: 124 GHLEIVEVLLKNGADVNAQD--KFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  157 bits (399), Expect = 2e-45
 Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 5/169 (2%)

Query: 33  RGADIEHR-DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY 91
           RG+   H         L+ AA AG D  V IL+ + AD+ A+      TPL LA   G  
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS-GWTPLHLAAFNGHL 60

Query: 92  EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
           E+VE+LL  GA+    + +  TPL LAA  G++ I+++LL +GA++N+      G +PL 
Sbjct: 61  EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND--MEGHTPLH 118

Query: 152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLL 200
           LAAM GH   V++LL  G+D+NAQ +    TA  ++   G  ++  +L 
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQ-DKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  154 bits (393), Expect = 2e-44
 Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 10/172 (5%)

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
           GS  +    ++    L  A   GR + V +L+   A+V     +G TPL  AA  G++E+
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 229 GRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
             VLL  GADVNA       D    T L +AA  GH   VE+LL  GA V   + +G++P
Sbjct: 63  VEVLLKNGADVNA------VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP 116

Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           L LAA  GHL +VE+L K+GAD+++QD    +    +   G+      +   
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  129 bits (327), Expect = 3e-35
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           T L LA   GH E+VE+LL  GAD+   D  G TPL LAA  GH ++V++LL + AD+ A
Sbjct: 49  TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
                  TPL LA   G  E+VE+LL  GA+   ++    T   ++   G  ++ ++L  
Sbjct: 109 NDM-EGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

Query: 133 H 133
            
Sbjct: 168 L 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  122 bits (309), Expect = 1e-32
 Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 11/142 (7%)

Query: 202 RKANVEHRAKT-GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAA 256
           R ++  H   +     L+EAA  G  +  R+L+  GADVNA       D    T L +AA
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA------EDASGWTPLHLAA 55

Query: 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
             GH   VE+LL  GA V   +  G +PL LAA  GHL +VE+L K+GAD+++ D    +
Sbjct: 56  FNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHT 115

Query: 317 CLMAAFRKGHVKAVRWMVNHVA 338
            L  A   GH++ V  ++ + A
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGA 137

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  163 bits (416), Expect = 5e-47
 Identities = 50/221 (22%), Positives = 72/221 (32%), Gaps = 10/221 (4%)

Query: 27  VELLLSRGADIEHRDKKGFTP---LILAATAGHDKVVDILLNHKADMEAQSERTKDTPLS 83
           +  +L +        +    P   L+ AA  G  +VV   +    D    +E    T L 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALH 59

Query: 84  LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS 143
            A  G  Y +V+ L+T GAN    +   +TPL  AAS     I   L+ HGA I + T  
Sbjct: 60  NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT-L 118

Query: 144 KLGISPLMLAAM--NGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
             G +          G+      L D+   +     +    AL         + +S    
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLM-NSGAVYALWDYS-AEFGDELSFREG 176

Query: 202 RKANVEHRAKTGLTPLMEAASGGYVE-VGRVLLDKGADVNA 241
               V  R     T    AA  G    V R        V  
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 217

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  158 bits (403), Expect = 3e-45
 Identities = 44/229 (19%), Positives = 77/229 (33%), Gaps = 8/229 (3%)

Query: 127 IKLLLTHGAEINSRTGSKL-GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
           ++ +L           ++L  +  L+ AA+ G    V+  +   +D +   E    TAL 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALH 59

Query: 186 LACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP 245
            A     + +V  L+   ANV      G TPL  AAS     +   L+  GA + A  + 
Sbjct: 60  NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL- 118

Query: 246 SSRDTALTIAAD--KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
           S   TA        +G+      L      + + N      LW  +       +      
Sbjct: 119 SDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD-ELSFREGE 177

Query: 304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQT 352
              +  +D  + +    A   G    V    N+   FP  +     ++ 
Sbjct: 178 SVTVLRRDGPEETDWWWAALHGQEGYV--PRNYFGLFPRVKPQRSKVKH 224

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  130 bits (330), Expect = 5e-35
 Identities = 33/166 (19%), Positives = 58/166 (34%), Gaps = 6/166 (3%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           TAL  A  G +  +V+ L++ GA++   D  G+TPL  AA+     +   L+ H A + A
Sbjct: 56  TALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115

Query: 73  QSERTKDTPLSLA--CSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
            +     T          G  +    L     +    N      L    S  + + +   
Sbjct: 116 TTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL-WDYSAEFGDELSFR 174

Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAV-KLLLDMGSDINAQ 175
                 +  R G     +    AA++G    V +    +   +  Q
Sbjct: 175 EGESVTVLRRDGP--EETDWWWAALHGQEGYVPRNYFGLFPRVKPQ 218

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  159 bits (404), Expect = 6e-46
 Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 7/178 (3%)

Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
              I SRT  + G    ++   +GH+ +      + +D+ +       T    A  +   
Sbjct: 3   NKIIGSRTAGE-GAMEYLIEWKDGHSPSWVPSSYIAADVVS----EYETPWWTAARKADE 57

Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALT 253
           + +S LL+   +V+   + G T L+  A  G  +  R+L + GAD++   +     TAL 
Sbjct: 58  QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL-TALH 115

Query: 254 IAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD 311
           +AA       VE L+  GA +EV++++G + L LA      +      + G  I  + 
Sbjct: 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  156 bits (396), Expect = 8e-45
 Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 10/171 (5%)

Query: 8   ESNHD--TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
            +  +      +    GH           AD+     +  TP   AA    ++ +  LL 
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL- 64

Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYV 124
              D++A  E    T L      G  + V LL   GA+ +HR++    T L +AA     
Sbjct: 65  EDRDVDAVDEN-GRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 123

Query: 125 NIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
            +++ L+  GA+I      + G++ L LA     T      +  G  I  +
Sbjct: 124 EVVEALVELGADIEVED--ERGLTALELAREILKTTPKGNPMQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  153 bits (390), Expect = 6e-44
 Identities = 34/162 (20%), Positives = 58/162 (35%), Gaps = 6/162 (3%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
               +    G            A+         TP   AA       +  LL    ++++
Sbjct: 16  MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL-EDRDVDA 71

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
               + G + L+  A  G    V+LL + G+D++ +      TAL +A    R EVV  L
Sbjct: 72  VD--ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           ++  A++E   + GLT L  A            +  G  +  
Sbjct: 130 VELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGL 171

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  146 bits (372), Expect = 2e-41
 Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 41/217 (18%)

Query: 92  EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
           EV +++ +R A +            +    G+           A++ S        +P  
Sbjct: 1   EVNKIIGSRTAGEG------AMEYLIEWKDGHSPSWVPSSYIAADVVSE-----YETPWW 49

Query: 152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR-A 210
            AA      A+  LL+   D++A  + N  TAL      G  + V LL +  A+++HR  
Sbjct: 50  TAARKADEQALSQLLE-DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107

Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVEL 266
           + GLT L  AA     EV   L++ GAD+         D    TAL +A +         
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADIEV------EDERGLTALELAREILKTTPKGN 161

Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
            +  G ++                 G   V+ +L   
Sbjct: 162 PMQFGRRI-----------------GLEKVINVLEGQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  137 bits (348), Expect = 6e-38
 Identities = 43/166 (25%), Positives = 60/166 (36%), Gaps = 24/166 (14%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV SE E    T    A     E+ +  LL    D++  D+ G T L+  A  G DK V 
Sbjct: 39  DVVSEYE----TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVR 93

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +L    AD++ +  R   T L +A    R EVVE L+  GA+ E  +    T L LA   
Sbjct: 94  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
                    +  G  I                        + +L  
Sbjct: 154 LKTTPKGNPMQFGRRIG-------------------LEKVINVLEG 180

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  131 bits (332), Expect = 8e-36
 Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 7/174 (4%)

Query: 167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
           ++   I ++          +    G            A+V        TP   AA     
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADE 57

Query: 227 EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK-GNSPL 285
           +    LL +  DV+A  V  +  TAL   A  G  + V LL   GA ++ ++ + G + L
Sbjct: 58  QALSQLL-EDRDVDA--VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTAL 114

Query: 286 WLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ 339
            +AA      VVE L + GADI+ +D R ++ L  A            +    +
Sbjct: 115 HMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRR 168

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  156 bits (397), Expect = 3e-45
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 12  DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
              L  A A G  E V  LL  GA+    +  G  P+ +    G  +V ++LL H A+  
Sbjct: 13  ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN 71

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
                T   P+  A   G  + + +L   GA  + R+     P+ LA   G+ ++ + L 
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 131

Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHT 159
                               + A  G +
Sbjct: 132 AAAGGTRGSN-------HARIDAAEGPS 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  144 bits (367), Expect = 5e-41
 Identities = 36/167 (21%), Positives = 59/167 (35%), Gaps = 13/167 (7%)

Query: 31  LSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR 90
           +   A      +     L  AA  G  + V  LL   A+  A +      P+ +    G 
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSY-GRRPIQVMMM-GS 56

Query: 91  YEVVELLLTRGANKEHRNVSDYT-PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP 149
             V ELLL  GA     + +  T P+  AA  G+++ + +L   GA ++ R     G  P
Sbjct: 57  ARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD--AWGRLP 114

Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
           + LA   GH    + L                    +   +G  ++ 
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRGS------NHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  143 bits (364), Expect = 1e-40
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 10/161 (6%)

Query: 166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY 225
           ++  +  + +        L  A  +GR E V  LL+  AN       G  P+     G  
Sbjct: 1   MEPAAGSSME---PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-S 56

Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
             V  +LL  GA+ N    P++    +  AA +G    + +L   GA+++V++  G  P+
Sbjct: 57  ARVAELLLLHGAEPNCA-DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115

Query: 286 WLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
            LA   GH  V   L          ++           +G 
Sbjct: 116 DLAEELGHRDVARYLRAAAGGTRGSNH-----ARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  141 bits (358), Expect = 9e-40
 Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 22/173 (12%)

Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
           +   A  +    +      L  AA  G    V+ LL+ G++ NA     R   + +    
Sbjct: 1   MEPAAGSSMEPSA----DWLATAAARGRVEEVRALLEAGANPNAPNSYGR-RPIQVMM-M 54

Query: 191 GRHEVVSLLLDRKANVEHRAKTGLT-PLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD 249
           G   V  LLL   A         LT P+ +AA  G+++   VL   GA ++       RD
Sbjct: 55  GSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------RD 108

Query: 250 ----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
                 + +A + GH      L +        N        + A  G   + +
Sbjct: 109 AWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  139 bits (354), Expect = 4e-39
 Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 12/168 (7%)

Query: 98  LTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG 157
           +   A            L+ AA+ G V  ++ LL  GA  N+      G  P+ +  M G
Sbjct: 1   MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPN--SYGRRPIQVMMM-G 55

Query: 158 HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPL 217
                +LLL  G++ N          +  A  +G  + + +L    A ++ R   G  P+
Sbjct: 56  SARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115

Query: 218 MEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE 265
             A   G+ +V R L                     I A +G     +
Sbjct: 116 DLAEELGHRDVARYLRAAAGGTRG-------SNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  139 bits (352), Expect = 8e-39
 Identities = 37/165 (22%), Positives = 58/165 (35%), Gaps = 11/165 (6%)

Query: 64  LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
           +   A     S       L+ A + GR E V  LL  GAN    N     P+ +    G 
Sbjct: 1   MEPAAG---SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GS 56

Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTA 183
             + +LLL HGAE N    +     P+  AA  G    + +L   G+ ++ + +      
Sbjct: 57  ARVAELLLLHGAEPNCADPAT-LTRPVHDAAREGFLDTLVVLHRAGARLDVR-DAWGRLP 114

Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
           + LA   G  +V   L                     A+ G  ++
Sbjct: 115 VDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 93.7 bits (234), Expect = 1e-22
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           + +    +     +  A   G  + + +L   GA ++ RD  G  P+ LA   GH  V  
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVE 95
            L                    +  + G  ++ +
Sbjct: 129 YLRAAAGGTRGS------NHARIDAAEGPSDIPD 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  151 bits (385), Expect = 2e-43
 Identities = 53/162 (32%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH 208
            L  AA  G    +  LL    ++NAQ      TAL +    G  E+   LL R AN + 
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65

Query: 209 RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFV 264
           + +TG   + +AA  G+++  + LL+  ADVN        D      L +AA +GH R V
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI------EDNEGNLPLHLAAKEGHLRVV 119

Query: 265 ELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
           E L+   A  V  +N KG++   LA   G   VV L+  +GA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  150 bits (382), Expect = 5e-43
 Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
             L  A A G  E +  LL    ++  ++  G T L +    G+ ++   LL   A+ + 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL 65

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
           +   T    +  A   G  + ++ LL   A+    +     PL LAA  G++ +++ L+ 
Sbjct: 66  KDR-TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124

Query: 133 HGAE-INSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
           H A  +  R     G +   LA + G    V L+   G
Sbjct: 125 HTASNVGHRN--HKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  145 bits (369), Expect = 4e-41
 Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 5/159 (3%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
             L+ A + G  E +  LL    N   +N    T L +   G    I + LL  GA  + 
Sbjct: 7   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLRGANPDL 65

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           +   + G + +  AA  G    ++ LL+  +D+N + +   N  L LA  +G   VV  L
Sbjct: 66  KD--RTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFL 122

Query: 200 LDRKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
           +   A NV HR   G T    A   G  EV  ++   GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  144 bits (365), Expect = 1e-40
 Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 6/163 (3%)

Query: 43  KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGA 102
                L  AA  G  + +  LL +  ++ AQ+     T L +    G  E+   LL RGA
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVM-KLGNPEIARRLLLRGA 61

Query: 103 NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAV 162
           N + ++ + +  +  AA  G+++ ++ LL   A++N       G  PL LAA  GH   V
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIED--NEGNLPLHLAAKEGHLRVV 119

Query: 163 KLLLDMG-SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
           + L+    S++  +     +TA  LA   GR+EVVSL+    A
Sbjct: 120 EFLVKHTASNVGHR-NHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  136 bits (346), Expect = 5e-38
 Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 12/161 (7%)

Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
              L  A  +G  E ++ LL    NV  +   G T L      G  E+ R LL +GA+ +
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPD 64

Query: 241 APPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV 296
                  +D      +  AA  G    ++ LL   A V +++ +GN PL LAA  GHL V
Sbjct: 65  L------KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV 118

Query: 297 VELLCKHGA-DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           VE L KH A ++  ++++  +    A   G  + V  M  +
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  127 bits (323), Expect = 9e-35
 Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 3/124 (2%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           TAL +    G+ E+   LL RGA+ + +D+ GF  +  AA AG    +  LL  +AD+  
Sbjct: 40  TALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGA-NKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
           +     + PL LA   G   VVE L+   A N  HRN    T   LA   G   ++ L+ 
Sbjct: 99  EDN-EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

Query: 132 THGA 135
            +GA
Sbjct: 158 ANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  115 bits (292), Expect = 2e-30
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 11/130 (8%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLL 268
               L  AA+ G +E    LL    +VNA      ++    TAL +    G+      LL
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNA------QNGFGRTALQVMK-LGNPEIARRLL 57

Query: 269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
            +GA  ++K++ G + +  AA  G L  ++ L +  AD++ +DN     L  A ++GH++
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117

Query: 329 AVRWMVNHVA 338
            V ++V H A
Sbjct: 118 VVEFLVKHTA 127

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.8 bits (123), Expect = 9e-08
 Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
              + L  AA  G L  +  L ++  ++++Q+    + L    + G+ +  R ++  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLR 59

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  148 bits (376), Expect = 2e-42
 Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
             L  A   G ++ V +L++ GA     D  G +PL LAA  GH    ++LL      +A
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 73  QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
              RTK   TPL +A S G   +VE+LL  GA+   +++   T L  A    +  +++LL
Sbjct: 63  ---RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           + +GA+++++  SK   +   ++  NG+    ++L
Sbjct: 120 IKYGADVHTQ--SKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  144 bits (366), Expect = 6e-41
 Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 12/156 (7%)

Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH 208
            L+ AA  G    V++L+  G+      +    + L LA   G      +LL    + + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 209 RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFV 264
           R K   TPL  AAS G+  +  VLL  GADVNA      +D    TAL  A +  H   V
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNA------KDMLKMTALHWATEHNHQEVV 116

Query: 265 ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
           ELL+  GA V  ++K   +   ++ + G+  + E+L
Sbjct: 117 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  143 bits (363), Expect = 2e-40
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 5/156 (3%)

Query: 44  GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGAN 103
               L+ AA AG D  V IL+ + A        T  +PL LA   G +   E+LL  G +
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGT--SPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 104 KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK 163
           ++ R   D TPL +AAS G+ NI+++LL HGA++N++    L ++ L  A  + H   V+
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD--MLKMTALHWATEHNHQEVVE 117

Query: 164 LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           LL+  G+D++ Q      TA  ++   G  ++  +L
Sbjct: 118 LLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  134 bits (339), Expect = 4e-37
 Identities = 46/157 (29%), Positives = 65/157 (41%), Gaps = 11/157 (7%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           +    L  A   G+ + V +L+   A        G +PL  AA  G+     VLL  G  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 239 VNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL 294
            +A      R     T L +AA +GH   VE+LL  GA V  K+    + L  A    H 
Sbjct: 60  RDA------RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
            VVELL K+GAD+ +Q     +    +   G+     
Sbjct: 114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  115 bits (292), Expect = 2e-30
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
               L+EAA  G  +  R+L+  GA            + L +AA  GH    E+LL  G 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTD---WLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
             + + K   +PL +AA+ GH ++VE+L KHGAD++++D  K++ L  A    H + V  
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 333 MVNHVA 338
           ++ + A
Sbjct: 119 LIKYGA 124

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 93.6 bits (234), Expect = 1e-22
 Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
             D+ T+    T L +A + GH  +VE+LL  GAD+  +D    T L  A    H +VV+
Sbjct: 59  SRDARTK-VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
           +L+ + AD+  QS+  K T   ++   G  ++ E+L
Sbjct: 118 LLIKYGADVHTQSKFCK-TAFDISIDNGNEDLAEIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  147 bits (373), Expect = 7e-42
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 149 PLMLAAMNGHTAAVKLLLD-MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
            L  AA  G    V+ LL       +A       TAL +  F G   +   LL + A+  
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVE 265
            +  +G +P+ +AA  G+++  +VL++ GADVN P           + +A  +GH   V 
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVP----DGTGALPIHLAVQEGHTAVVS 118

Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
            L +  + +  ++ +G +PL LA   G   +V++L  H
Sbjct: 119 FLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  145 bits (368), Expect = 4e-41
 Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 6/156 (3%)

Query: 13  TALTLACAGGH-EELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
             L+ A A G  +E+  LL       +  ++ G T L +    G   +   LL   A   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN 62

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
            Q   +  +P+  A   G  + +++L+  GA+    + +   P+ LA   G+  ++  L 
Sbjct: 63  VQDT-SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
              ++++ R     G++PL LA   G    V +L  
Sbjct: 122 -AESDLHRRD--ARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  145 bits (368), Expect = 4e-41
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 7/160 (4%)

Query: 43  KGFTPLILAATAGHDKVVDILLN-HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG 101
           +    L  AA  G  + V  LL+      +A +     T L +   G    +   LL +G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF-GKTALQVMMFG-STAIALELLKQG 58

Query: 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA 161
           A+   ++ S  +P+  AA  G+++ +K+L+ HGA++N       G  P+ LA   GHTA 
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPD--GTGALPIHLAVQEGHTAV 116

Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
           V  L    SD++ + +    T L LA  +G  ++V +L  
Sbjct: 117 VSFLAA-ESDLHRR-DARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  139 bits (353), Expect = 5e-39
 Identities = 42/162 (25%), Positives = 70/162 (43%), Gaps = 13/162 (8%)

Query: 181 NTALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
              L+ A  +G  + V  LL R+  + +   + G T L      G   +   LL +GA  
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQ-VMMFGSTAIALELLKQGASP 61

Query: 240 NAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS 295
           N       +D    + +  AA  G    +++L+  GA V V +  G  P+ LA   GH +
Sbjct: 62  NV------QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA 115

Query: 296 VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV 337
           VV  L    +D+  +D R ++ L  A ++G    V  +  H+
Sbjct: 116 VVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  126 bits (320), Expect = 2e-34
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 3/121 (2%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           TAL +    G   +   LL +GA    +D  G +P+  AA  G    + +L+ H AD+  
Sbjct: 38  TALQVM-MFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
               T   P+ LA   G   VV  L    ++   R+    TPL LA   G  +++ +L  
Sbjct: 97  PDG-TGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

Query: 133 H 133
           H
Sbjct: 155 H 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  110 bits (278), Expect = 1e-28
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDK-GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271
               L  AA+ G V+  R LL +     +A  +     TAL +    G       LL +G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMM-FGSTAIALELLKQG 58

Query: 272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
           A   V++  G SP+  AA  G L  +++L +HGAD++  D      +  A ++GH   V 
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 332 WMVNH 336
           ++   
Sbjct: 119 FLAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 83.6 bits (208), Expect = 3e-19
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 250 TALTIAADKGHCRFV-ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
             L+ AA +G  + V  LL  +    +  N+ G + L +   G   ++   L K GA  +
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG-STAIALELLKQGASPN 62

Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
            QD    S +  A R G +  ++ +V H A
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.8 bits (115), Expect = 9e-07
 Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 2/58 (3%)

Query: 280 KGNSPLWLAANGGHLSVV-ELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           +    L  AA  G +  V  LL +     D+ +    + L      G       ++  
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQ 57

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  151 bits (383), Expect = 7e-42
 Identities = 58/286 (20%), Positives = 95/286 (33%), Gaps = 67/286 (23%)

Query: 13  TALTLACAGGHEELVELLL-------SRGADIEHRDKK-GFTPLILA---ATAGHDKVVD 61
            ++  A A  + + +E LL        R  D E +D + G T L+ A      G +  + 
Sbjct: 15  RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 62  ILLNHKADMEAQSERTKD----------TPLSLACSGGRYEVVELLLTRGANKEHRNVSD 111
           +LL+     ++  +              T L +A       +V LL+  GA+ +     D
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134

Query: 112 Y--------------TPLSLAASGGYVNIIKLLLTHG---AEINSRTGSKLGISPLMLAA 154
           +               PLSLAA    + I+K LL +    A+I++R    +G + L    
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD--SVGNTVLHALV 192

Query: 155 MNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGL 214
                                     NT    + +     + + L       E   + GL
Sbjct: 193 EVADNTVD------------------NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL 234

Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
           TPL  AAS G + V   +L +                   AA   H
Sbjct: 235 TPLALAASSGKIGVLAYILQREIHEP---------ECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  145 bits (367), Expect = 1e-39
 Identities = 53/298 (17%), Positives = 88/298 (29%), Gaps = 63/298 (21%)

Query: 32  SRGADIEHRDKKGFTPLILAATAGHDKVVDILLN-------HKADMEAQSERTKDTPLSL 84
           S  A  +         +  A    + + ++ LL           D E +   T  T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 85  A---CSGGRYEVVELLLTRGANKEH-----------RNVSDYTPLSLAASGGYVNIIKLL 130
           A      G+ + + LLL      +                  T L +A     + ++ LL
Sbjct: 61  AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120

Query: 131 LTHGAEINSRT------------GSKLGISPLMLAAMNGHTAAVKLLLDMGS---DINAQ 175
           + +GA++ +              G   G  PL LAA     A VK LL       DI+A+
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180

Query: 176 IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
            ++  NT L        + V +                 T  + +     + +G  L   
Sbjct: 181 -DSVGNTVLHALVEVADNTVDN-----------------TKFVTSMYNEILILGAKLHPT 222

Query: 236 GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH 293
                         T L +AA  G    +  +L +                 AA+  H
Sbjct: 223 LKLEEIT--NRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  112 bits (283), Expect = 3e-28
 Identities = 40/190 (21%), Positives = 60/190 (31%), Gaps = 43/190 (22%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGF--------------TP 47
              +++     TAL +A    +  LV LL+  GAD++      F               P
Sbjct: 92  ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151

Query: 48  LILAATAGHDKVVDILLNH---KADMEAQSERTKDTPLSLACSGGR-------------- 90
           L LAA      +V  LL +    AD+ A+      T L                      
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGN-TVLHALVEVADNTVDNTKFVTSMYN 210

Query: 91  --YEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGIS 148
               +   L      +E  N    TPL+LAAS G + ++  +L                 
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH---------EPE 261

Query: 149 PLMLAAMNGH 158
               AA + H
Sbjct: 262 CRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 25/131 (19%)

Query: 13  TALTLACAGGHEELVELLLSRG---ADIEHRDKKGFTPLILAATAGHDKVV--------- 60
             L+LA       +V+ LL      ADI  RD  G T L        + V          
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 61  DILLNHKADMEAQSE----RTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP 114
           + +L   A +    +      +   TPL+LA S G+  V+  +L R  ++          
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP-------EC 262

Query: 115 LSLAASGGYVN 125
              AA   + +
Sbjct: 263 RHAAAHHHHHH 273

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  145 bits (367), Expect = 1e-40
 Identities = 31/184 (16%), Positives = 64/184 (34%), Gaps = 25/184 (13%)

Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIE--TNRNTALTLACFQGRHEVVSLLLDRKAN 205
             +  AAM G       L + G +    +         L     + R+++   L+++ A+
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 206 VEHRAKTGLTPLMEAASGGY------VEVGRVLLDKGADVNAPPVPSSRD----TALTIA 255
           ++ R K G T       GG        E+ ++ L+KGAD+ A              +   
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA------LYKPYKIVVFKN 121

Query: 256 ADKGHCRFVE-------LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
                    E       +    G Q+ +K+K G + L           ++++  +    +
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

Query: 309 SQDN 312
            ++N
Sbjct: 182 LKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  138 bits (350), Expect = 3e-38
 Identities = 30/209 (14%), Positives = 59/209 (28%), Gaps = 39/209 (18%)

Query: 42  KKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLT 99
              +  +  AA  G  +    L     + +    ++      L       RY++   L+ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNI------IKLLLTHGAEINSRTGSKLGISPLMLA 153
           +GA+ + R     T       GG  +I       K+ L  GA+I +    K     +   
Sbjct: 64  KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY--KPYKIVVFKN 121

Query: 154 AMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK-ANVEHRAKT 212
             N      +++                             +  L+  +    +  + K 
Sbjct: 122 IFNYFVDENEMI----------------------------PLYKLIFSQSGLQLLIKDKW 153

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           GLT L            +++ D     N 
Sbjct: 154 GLTALEFVKRCQKPIALKMMEDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  136 bits (344), Expect = 2e-37
 Identities = 27/179 (15%), Positives = 60/179 (33%), Gaps = 19/179 (10%)

Query: 13  TALTLACAGGHEELVELLLSRGADI---EHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
             ++ A   G  E    L  +G +      +    +  L         K+   L+N  AD
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 70  MEAQSERTKDTPLSLACSGGR------YEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
           ++++++    T       GG        E+ ++ L +GA+           +       +
Sbjct: 68  IKSRTKE-GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126

Query: 124 VNIIK-------LLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
           V+  +       +    G ++  +   K G++ L          A+K++ D     N +
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKD--KWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  122 bits (309), Expect = 1e-32
 Identities = 25/180 (13%), Positives = 56/180 (31%), Gaps = 26/180 (14%)

Query: 179 NRNTALTLACFQGRHEVVSLLLDRKANV---EHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
           +    ++ A   G +E    L ++         ++      L         ++   L++K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 236 GADVNAPPVPSSRD----TALTIAADKGH------CRFVELLLSKGAQVEVKNKKGNSPL 285
           GAD+ +      R     T        G           ++ L KGA +    K     +
Sbjct: 65  GADIKS------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV 118

Query: 286 WLAANGGHLSVVE-------LLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           +       +   E       +  + G  +  +D   ++ L    R     A++ M +++ 
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  102 bits (255), Expect = 3e-25
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 13/132 (9%)

Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT----ALTIAADKGHCRFVE 265
           A +    +  AA  G  E    L +KG +         +       L    D+   +   
Sbjct: 3   AMSEYRTVSAAAMLGTYEDFLELFEKGYEDKE---SVLKSNILYDVLRNNNDEARYKISM 59

Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSV------VELLCKHGADIDSQDNRKVSCLM 319
            L++KGA ++ + K+G +  +    GG   +       ++  + GADI +        + 
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 320 AAFRKGHVKAVR 331
                  V    
Sbjct: 120 KNIFNYFVDENE 131

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 94.0 bits (234), Expect = 2e-22
 Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 15/120 (12%)

Query: 2   DVDSETESNHDTALTLACAGGHE------ELVELLLSRGADIEHRDKKGFTPLILAATAG 55
           D+ S T+    T       GG        EL ++ L +GADI    K     +       
Sbjct: 67  DIKSRTKEGT-TLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

Query: 56  HD------KVVDILLNHK-ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRN 108
                    +  ++ +     +  + +    T L       +   ++++         + 
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.9 bits (174), Expect = 2e-14
 Identities = 8/81 (9%), Positives = 23/81 (28%), Gaps = 8/81 (9%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVE-------LLLSRGADIEHRDKKGFTPLILAATA 54
           D+ +  +  +   +         +  E       +    G  +  +DK G T L      
Sbjct: 106 DITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

Query: 55  GHDKVVDILLNHKADMEAQSE 75
                + ++ ++      +  
Sbjct: 165 QKPIALKMMEDYIKKYNLKEN 185

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  142 bits (362), Expect = 1e-40
 Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 3/138 (2%)

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
              I+     + +  L  A  +G+ E V  LL+  A+     + G  P+     G   +V
Sbjct: 2   SPGIHML-GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG-SAQV 59

Query: 229 GRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
             +LL  GA+ N    P++    +  AA +G    + +L   GA+++V +  G  P+ LA
Sbjct: 60  AELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

Query: 289 ANGGHLSVVELLCKHGAD 306
              GH  +   L     D
Sbjct: 119 EEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  142 bits (361), Expect = 2e-40
 Identities = 36/139 (25%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 34  GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV 93
              I          L  AA  G  + V  LL   AD  A +      P+ +    G  +V
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF-GRRPIQVMMM-GSAQV 59

Query: 94  VELLLTRGANKEHRNVSDYT-PLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
            ELLL  GA     + +  T P+  AA  G+++ + +L   GA ++       G  P+ L
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD--AWGRLPVDL 117

Query: 153 AAMNGHTAAVKLLLDMGSD 171
           A   GH    + L     D
Sbjct: 118 AEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  142 bits (361), Expect = 2e-40
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 2/134 (1%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            +      + D  L  A A G  E V  LL  GAD    ++ G  P+ +    G  +V +
Sbjct: 4   GIHMLGG-SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAE 61

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           +LL H A+       T   P+  A   G  + + +L   GA  +  +     P+ LA   
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQ 121

Query: 122 GYVNIIKLLLTHGA 135
           G+ +I + L     
Sbjct: 122 GHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  136 bits (346), Expect = 3e-38
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 3/138 (2%)

Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
                    S    L+ AA+ G V  ++ LL  GA+ N+    + G  P+ +    G   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN--RFGRRPIQVMM-MGSAQ 58

Query: 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
             +LLL  G++ N          +  A  +G  + + +L    A ++     G  P+  A
Sbjct: 59  VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

Query: 221 ASGGYVEVGRVLLDKGAD 238
              G+ ++ R L     D
Sbjct: 119 EEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  130 bits (330), Expect = 4e-36
 Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 12/140 (8%)

Query: 204 ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKG 259
             +     +    L  AA+ G VE  R LL+ GAD NA       +      + +    G
Sbjct: 3   PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA------LNRFGRRPIQVMM-MG 55

Query: 260 HCRFVELLLSKGAQVEVKNKKGN-SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
             +  ELLL  GA+    +      P+  AA  G L  + +L + GA +D  D      +
Sbjct: 56  SAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPV 115

Query: 319 MAAFRKGHVKAVRWMVNHVA 338
             A  +GH    R++     
Sbjct: 116 DLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 14/68 (20%), Positives = 25/68 (36%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           + +    +     +  A   G  + + +L   GA ++  D  G  P+ LA   GH  +  
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128

Query: 62  ILLNHKAD 69
            L     D
Sbjct: 129 YLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.8 bits (159), Expect = 9e-13
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
              + +     ++ L  AA  G +  V  L + GAD ++ +      +      G  +  
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQVA 60

Query: 331 RWMVNH 336
             ++ H
Sbjct: 61  ELLLLH 66

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  142 bits (360), Expect = 2e-40
 Identities = 60/125 (48%), Positives = 78/125 (62%), Gaps = 5/125 (4%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           T L LA   GH E+V+LLL  GAD+  +DK G TPL LAA  GH +VV +LL   AD+ A
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 73  QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
           +    K+  TPL LA   G  EVV+LLL  GA+   ++ +  TPL LAA  G++ ++KLL
Sbjct: 64  K---DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 131 LTHGA 135
           L  GA
Sbjct: 121 LEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  138 bits (350), Expect = 6e-39
 Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 10/129 (7%)

Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
            T L LA   G  EVV LLL+  A+V  + K G TPL  AA  G++EV ++LL+ GADVN
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 241 APPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV 296
           A      +D    T L +AA  GH   V+LLL  GA V  K+K G +PL LAA  GHL V
Sbjct: 63  A------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 116

Query: 297 VELLCKHGA 305
           V+LL + GA
Sbjct: 117 VKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  129 bits (328), Expect = 7e-36
 Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 3/125 (2%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           TPL LA   G  EVV+LLL  GA+   ++ +  TPL LAA  G++ ++KLLL  GA++N+
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
           +   K G +PL LAA NGH   VKLLL+ G+D+NA+ + N  T L LA   G  EVV LL
Sbjct: 64  KD--KNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLL 120

Query: 200 LDRKA 204
           L+  A
Sbjct: 121 LEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  125 bits (316), Expect = 3e-34
 Identities = 55/124 (44%), Positives = 77/124 (62%), Gaps = 2/124 (1%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G TPL  AA  G++EV ++LL+ GADVNA     +  T L +AA  GH   V+LLL  GA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRW 332
            V  K+K G +PL LAA  GHL VV+LL + GAD++++D    + L  A R GH++ V+ 
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119

Query: 333 MVNH 336
           ++  
Sbjct: 120 LLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  108 bits (272), Expect = 4e-28
 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 6/103 (5%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV+++ + N  T L LA   GH E+V+LLL  GAD+  +DK G TPL LAA  GH +VV 
Sbjct: 27  DVNAKDK-NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 85

Query: 62  ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVELLLTRGA 102
           +LL   AD+ A+    K+  TPL LA   G  EVV+LLL  GA
Sbjct: 86  LLLEAGADVNAK---DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 99.7 bits (250), Expect = 4e-25
 Identities = 39/89 (43%), Positives = 55/89 (61%)

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           T L +AA  GH   V+LLL  GA V  K+K G +PL LAA  GHL VV+LL + GAD+++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           +D    + L  A R GH++ V+ ++   A
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  142 bits (362), Expect = 3e-40
 Identities = 56/159 (35%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 12  DTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
           D  L  A   G  E V+ L +    +    + +  TPL  AA      VV+ LL H AD+
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68

Query: 71  EAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
            A+ +     PL  ACS G YEV ELL+  GA     ++  +TPL  AA+ G   I KLL
Sbjct: 69  HAKDK-GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
           L HGA+   +   + G +PL L   +G T    LL    
Sbjct: 128 LQHGADPTKKN--RDGNTPLDLVK-DGDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  140 bits (357), Expect = 2e-39
 Identities = 52/172 (30%), Positives = 72/172 (41%), Gaps = 9/172 (5%)

Query: 34  GADIEHRDKKGFTPLILAATAGHDKVVDILL-NHKADMEAQSERTKDTPLSLACSGGRYE 92
           GA     + +    L+ AA AG  + V  L      +      R + TPL  A    R  
Sbjct: 1   GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGR-QSTPLHFAAGYNRVS 56

Query: 93  VVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
           VVE LL  GA+   ++     PL  A S G+  + +LL+ HGA +N         +PL  
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD--LWKFTPLHE 114

Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
           AA  G     KLLL  G+D   +   + NT L L    G  ++  LL    A
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKK-NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  140 bits (355), Expect = 3e-39
 Identities = 61/209 (29%), Positives = 80/209 (38%), Gaps = 49/209 (23%)

Query: 101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA 160
           GA     N      L  AA  G V  +K L T  + +N R       +PL  AA     +
Sbjct: 1   GAMG---NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVS 56

Query: 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
            V+ LL  G+D++A                                  + K GL PL  A
Sbjct: 57  VVEYLLQHGADVHA----------------------------------KDKGGLVPLHNA 82

Query: 221 ASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEV 276
            S G+ EV  +L+  GA VN        D    T L  AA KG     +LLL  GA    
Sbjct: 83  CSYGHYEVAELLVKHGAVVNV------ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGA 305
           KN+ GN+PL L  + G   + +LL    A
Sbjct: 137 KNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  132 bits (334), Expect = 3e-36
 Identities = 49/175 (28%), Positives = 66/175 (37%), Gaps = 16/175 (9%)

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVE 227
           G+  N+      +  L  A   G  E V  L   +  N         TPL  AA    V 
Sbjct: 1   GAMGNS----EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 56

Query: 228 VGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
           V   LL  GADV+A      +D      L  A   GH    ELL+  GA V V +    +
Sbjct: 57  VVEYLLQHGADVHA------KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT 110

Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           PL  AA  G   + +LL +HGAD   ++    + L    + G       +    A
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  126 bits (320), Expect = 3e-34
 Identities = 46/130 (35%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
           + E    T L  A       +VE LL  GAD+  +DK G  PL  A + GH +V ++L+ 
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96

Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
           H A +       K TPL  A + G+YE+ +LLL  GA+   +N    TPL L    G  +
Sbjct: 97  HGAVVNVADL-WKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTD 154

Query: 126 IIKLLLTHGA 135
           I  LL    A
Sbjct: 155 IQDLLRGDAA 164

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  144 bits (366), Expect = 9e-40
 Identities = 50/322 (15%), Positives = 80/322 (24%), Gaps = 95/322 (29%)

Query: 13  TALTLACAGGHEELVELLL--------SRGADIEHRDKKGFTPLILAA---TAGHDKVVD 61
             L    + G  E +  LL                    G T L+ A      G +  + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
            LL    D                                A         ++ L +A   
Sbjct: 64  PLLQIDKDSGN-----------------------PKPLVNAQCTDEFYQGHSALHIAIEK 100

Query: 122 GYVNIIKLLLTHGAEINSRT-----------GSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
             +  +KLL+ +GA+++ R                G  PL LAA       V  LL+   
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160

Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230
                                            A++E     G T L             
Sbjct: 161 Q-------------------------------PASLEATDSLGNTVLHALVMIADNSPE- 188

Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
                             ++AL I    G  +    L       E+ N +G +PL LAA 
Sbjct: 189 ------------------NSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK 230

Query: 291 GGHLSVVELLCKHGADIDSQDN 312
            G + +   + +      +  +
Sbjct: 231 EGKIEIFRHILQREFSGAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  122 bits (307), Expect = 1e-31
 Identities = 54/264 (20%), Positives = 88/264 (33%), Gaps = 54/264 (20%)

Query: 111 DYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS------KLGISPLMLAAMN---GHTAA 161
           D   L    S G    +  LL +    +             G + LM A +N   G  A 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 162 VKLLLDMGSD-------INAQIET---NRNTALTLACFQGRHEVVSLLLDRKANVEHRA- 210
           +  LL +  D       +NAQ        ++AL +A  +   + V LL++  A+V  RA 
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 211 ------------KTGLTPLMEAASGGYVEVGRVLLDKG---ADVNAPPVPSSRDTALTIA 255
                         G  PL  AA     +V   LL+     A + A    S  +T L   
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEA--TDSLGNTVLHAL 179

Query: 256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV 315
                                 N   NS L +    G L +   LC      +  +++ +
Sbjct: 180 VMIA-----------------DNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222

Query: 316 SCLMAAFRKGHVKAVRWMVNHVAQ 339
           + L  A ++G ++  R ++     
Sbjct: 223 TPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  116 bits (292), Expect = 2e-29
 Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 48/207 (23%)

Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
           +      +AL +A      + V+LL+  GAD+  R    F            +       
Sbjct: 85  DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE------- 137

Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG---ANKEHRNVSDYTPLSLAASGG 122
                          PLSLA    +++VV  LL      A+ E  +    T L       
Sbjct: 138 --------------LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVL------- 176

Query: 123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN- 181
                     H   + +        S L++   +G       L             N   
Sbjct: 177 ----------HALVMIADNSP--ENSALVIHMYDGLLQMGARLCPTVQLEEIS---NHQG 221

Query: 182 -TALTLACFQGRHEVVSLLLDRKANVE 207
            T L LA  +G+ E+   +L R+ +  
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.5 bits (178), Expect = 2e-14
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 1   MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             V     S  ++AL +    G  ++   L       E  + +G TPL LAA  G  ++ 
Sbjct: 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237

Query: 61  DILLNHKADMEA 72
             +L  +    A
Sbjct: 238 RHILQREFSGAA 249

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  140 bits (356), Expect = 1e-39
 Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 3   VDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDI 62
           +D  T    +T L +A   G    VE LL  G+D   +D  G+TPL  A   GH KVV++
Sbjct: 2   IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 63  LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG 122
           LL HKA +     +  D+PL  A   G  ++V+LLL+ GA++   N+    P+       
Sbjct: 62  LLQHKALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDES 120

Query: 123 YVNIIKLLLTHGAEINS 139
             +++ L   + +   S
Sbjct: 121 MKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  137 bits (348), Expect = 1e-38
 Identities = 44/143 (30%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 169 GSDINAQIETNRN--TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV 226
           G D      TN    T L +A  +G    V  LL   ++   +   G TPL EA + G++
Sbjct: 1   GIDPF----TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL 56

Query: 227 EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLW 286
           +V  +LL   A VN        D+ L  AA  GH   V+LLLS GA     N  G  P+ 
Sbjct: 57  KVVELLLQHKALVNTTG--YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD 114

Query: 287 LAANGGHLSVVELLCKHGADIDS 309
              +    S++ L  K+ +   S
Sbjct: 115 YTDDESMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  136 bits (346), Expect = 3e-38
 Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 34  GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD--TPLSLACSGGRY 91
           G D    + +G T L +A+  G    V+ LL + +D      +     TPL  AC+ G  
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV---KDHAGWTPLHEACNHGHL 56

Query: 92  EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM 151
           +VVELLL   A        + +PL  AA  G+V+I+KLLL++GA  N+      G+ P+ 
Sbjct: 57  KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN--IFGLRPVD 114

Query: 152 LAAMNGHTAAVKLLLDMGSDINA 174
                   + + L        +A
Sbjct: 115 YTDDESMKSLLLLPEK-NESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  124 bits (314), Expect = 9e-34
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 3/126 (2%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           T L +A   G    VE LL  G++   ++ + +TPL  A + G++ +++LLL H A +N+
Sbjct: 12  TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
                   SPL  AA NGH   VKLLL  G+  NA         +     +    ++ L 
Sbjct: 72  T--GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLP 128

Query: 200 LDRKAN 205
              +++
Sbjct: 129 EKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  120 bits (304), Expect = 2e-32
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 10/124 (8%)

Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVEL 266
             G T L  A+  G +     LL  G+D N       +D    T L  A + GH + VEL
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSDPNV------KDHAGWTPLHEACNHGHLKVVEL 61

Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           LL   A V     + +SPL  AA  GH+ +V+LL  +GA  ++ +   +  +     +  
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM 121

Query: 327 VKAV 330
              +
Sbjct: 122 KSLL 125

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 96.7 bits (242), Expect = 6e-24
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 11/107 (10%)

Query: 236 GADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG 291
           G D          +    T L IA+ KG    VE LL  G+   VK+  G +PL  A N 
Sbjct: 1   GIDPFT-------NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH 53

Query: 292 GHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           GHL VVELL +H A +++   +  S L  A + GHV  V+ ++++ A
Sbjct: 54  GHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  128 bits (324), Expect = 2e-35
 Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)

Query: 12  DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
           D     A   G  + V+  +++G D+    + G  PL  AA  G  ++++ LL   AD+ 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
           A  +    TPL  A   G    V+LLL++GA+K  +     T      +     +++
Sbjct: 68  APDK-HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  124 bits (314), Expect = 6e-34
 Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN 240
           +     A   G  + V   + +  +V    + G  PL  AA  G +E+   LL KGAD+N
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 241 APPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE 298
           AP     +   T L  A  +GH   V+LLLSKGA   VK   G +      N    ++++
Sbjct: 68  AP----DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  122 bits (308), Expect = 4e-33
 Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 10/118 (8%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLL 268
                M A   G ++  +  + KG DVN               L  AAD G    +E LL
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNR------TLEGGRKPLHYAADCGQLEILEFLL 60

Query: 269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
            KGA +   +K   +PL  A   GH+S V+LL   GAD   +    ++   A   +  
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  120 bits (304), Expect = 1e-32
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 3/118 (2%)

Query: 79  DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
           D     A   G  + V+  + +G +          PL  AA  G + I++ LL  GA+IN
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV 196
           +    K  I+PL+ A   GH + VKLLL  G+D   +   +  TA      Q    ++
Sbjct: 68  AP--DKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDNQAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.4 bits (249), Expect = 4e-25
 Identities = 28/90 (31%), Positives = 46/90 (51%)

Query: 249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
           D     A   G    V+  ++KG  V    + G  PL  AA+ G L ++E L   GADI+
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           + D   ++ L++A  +GHV  V+ +++  A
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 96.3 bits (241), Expect = 6e-24
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 6/96 (6%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV+   E      L  A   G  E++E LL +GADI   DK   TPL+ A   GH   V 
Sbjct: 32  DVNRTLE-GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVK 90

Query: 62  ILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVE 95
           +LL+  AD   +     D  T      +     +++
Sbjct: 91  LLLSKGADKTVK---GPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 55.9 bits (136), Expect = 7e-10
 Identities = 9/60 (15%), Positives = 19/60 (31%)

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
                +     A   G L  V+     G D++         L  A   G ++ + +++  
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  130 bits (329), Expect = 2e-34
 Identities = 47/297 (15%), Positives = 92/297 (30%), Gaps = 75/297 (25%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKK----GFTPLILAA---TAGHDKVVDILLN 65
             ++     G E L+  LL+    +   + +    G T L  A    +AG +  + ILL+
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVN 125
                    E                          +          T L +A      +
Sbjct: 71  IAEKTGNMREFIN-----------------------SPFRDVYYRGQTALHIAIERRCKH 107

Query: 126 IIKLLLTHGAEINSRT------------GSKLGISPLMLAAMNGHTAAVKLLLDMGS--- 170
            ++LL+  GA+++++                 G  PL LAA       V  L + G    
Sbjct: 108 YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167

Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230
           D+  Q ++  NT L        H +V++  + + N +                   ++  
Sbjct: 168 DLRRQ-DSRGNTVL--------HALVAIADNTRENTK----------------FVTKMYD 202

Query: 231 VLLDKGADVNAPPVPSSRD-----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGN 282
           +LL K A +       +       + L +AA  G     + ++ +       +   +
Sbjct: 203 LLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  100 bits (251), Expect = 6e-24
 Identities = 37/190 (19%), Positives = 60/190 (31%), Gaps = 37/190 (19%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
               +      TAL +A     +  VELL+ +GAD+  + +  F          +     
Sbjct: 84  SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF---- 139

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD---YTPLSLA 118
                            + PLSLA    +  +V  L   G  +      D    T L   
Sbjct: 140 ----------------GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 119 ASGG---------YVNIIKLLLTHGAEINSRTGSKL-----GISPLMLAAMNGHTAAVKL 164
            +              +  LLL   A++   T  +      G+SPLM+AA  G     + 
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243

Query: 165 LLDMGSDINA 174
           ++       A
Sbjct: 244 IIRREIADAA 253

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 20/124 (16%)

Query: 215 TPLMEAASGG----YVEVGRVLLDKGADVNAPPVPSSRD--TALTIAA---DKGHCRFVE 265
             L +  S G       +   LL     +            T L  A      G    + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 266 LLLSKG-----------AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
           +LL              +       +G + L +A        VELL + GAD+ +Q   +
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 315 VSCL 318
               
Sbjct: 127 FFQP 130

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  120 bits (304), Expect = 2e-32
 Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 10/139 (7%)

Query: 28  ELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS 87
                 G+D+          L+ AA AG D  V IL+ + AD+ A+ E    TPL LA +
Sbjct: 5   HHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATA 56

Query: 88  GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGI 147
            G  E+VE+LL  GA+    +   +TPL LAA  G++ I ++LL HGA++N++   K G 
Sbjct: 57  HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD--KFGK 114

Query: 148 SPLMLAAMNGHTAAVKLLL 166
           +   ++  NG+    ++L 
Sbjct: 115 TAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  120 bits (303), Expect = 3e-32
 Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 10/139 (7%)

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
           GS  +    ++    L  A   G+ + V +L+   A+V  + + GLTPL  A + G++E+
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 229 GRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
             VLL  GADVNA       D    T L +AA  GH    E+LL  GA V  ++K G + 
Sbjct: 63  VEVLLKNGADVNA------VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116

Query: 285 LWLAANGGHLSVVELLCKH 303
             ++   G+  + E+L K 
Sbjct: 117 FDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  118 bits (299), Expect = 1e-31
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 1/125 (0%)

Query: 9   SNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKA 68
           S+    L  A   G ++ V +L++ GAD+  +D+ G TPL LA   GH ++V++LL + A
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
           D+ A       TPL LA   G  E+ E+LL  GA+   ++    T   ++   G  ++ +
Sbjct: 72  DVNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130

Query: 129 LLLTH 133
           +L   
Sbjct: 131 ILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  112 bits (284), Expect = 1e-29
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 100 RGANKEHRNVSD-YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH 158
           RG++  H + SD    L  AA  G  + +++L+ +GA++N++   + G++PL LA  +GH
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKD--EYGLTPLYLATAHGH 59

Query: 159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLM 218
              V++LL  G+D+NA       T L LA F G  E+  +LL   A+V  + K G T   
Sbjct: 60  LEIVEVLLKNGADVNAVDA-IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD 118

Query: 219 EAASGGYVEVGRVLL 233
            +   G  ++  +L 
Sbjct: 119 ISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  110 bits (279), Expect = 5e-29
 Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 10/126 (7%)

Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVELLLSK 270
             L+EAA  G  +  R+L+  GADVNA      +D    T L +A   GH   VE+LL  
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNA------KDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
           GA V   +  G +PL LAA  GHL + E+L KHGAD+++QD    +    +   G+    
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLA 129

Query: 331 RWMVNH 336
             +   
Sbjct: 130 EILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 92.8 bits (232), Expect = 1e-22
 Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLN 65
             +    T L LA A GH E+VE+LL  GAD+   D  GFTPL LAA  GH ++ ++LL 
Sbjct: 42  AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101

Query: 66  HKADMEAQSERTKDTPLSLACSGGRYEVVELLL 98
           H AD+ AQ +    T   ++   G  ++ E+L 
Sbjct: 102 HGADVNAQDK-FGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.1 bits (225), Expect = 1e-21
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 9/108 (8%)

Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
                G+D+            L  AA  G    V +L++ GA V  K++ G +PL+LA  
Sbjct: 6   HHHHHGSDLG---------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATA 56

Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
            GHL +VE+L K+GAD+++ D    + L  A   GH++    ++ H A
Sbjct: 57  HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  118 bits (298), Expect = 8e-32
 Identities = 47/107 (43%), Positives = 62/107 (57%), Gaps = 10/107 (9%)

Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRFVE 265
           +K G TPL  AA  G+ E  + LL KGADVNA      R     T L +AA  GH   V+
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKDGNTPLHLAAKNGHAEIVK 59

Query: 266 LLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
           LLL+KGA V  ++K GN+P  LA   GH  +V+LL   GAD++++  
Sbjct: 60  LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  115 bits (291), Expect = 8e-31
 Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 5/105 (4%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           T L  A   GH E V+ LLS+GAD+  R K G TPL LAA  GH ++V +LL   AD+ A
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

Query: 73  QSERTKD--TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPL 115
           +   +KD  TP  LA   G +E+V+LL  +GA+   R+       
Sbjct: 71  R---SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  112 bits (284), Expect = 6e-30
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 34  GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEV 93
           G       K G TPL  AA  GH + V  LL+  AD+ A+S+   +TPL LA   G  E+
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEI 57

Query: 94  VELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL 150
           V+LLL +GA+   R+    TP  LA   G+  I+KLL   GA++N+R+         
Sbjct: 58  VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS--WGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  109 bits (276), Expect = 8e-29
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 3/105 (2%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           TPL  A   G  E V+ LL++GA+   R+    TPL LAA  G+  I+KLLL  GA++N+
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTAL 184
           R+  K G +P  LA  NGH   VKLL   G+D+NA+     +   
Sbjct: 71  RS--KDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR-SWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  109 bits (274), Expect = 2e-28
 Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 5/108 (4%)

Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH 193
           G    S    K G +PL  AA NGH   VK LL  G+D+NA+   + NT L LA   G  
Sbjct: 1   GHMWGS----KDGNTPLHNAAKNGHAEEVKKLLSKGADVNAR-SKDGNTPLHLAAKNGHA 55

Query: 194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           E+V LLL + A+V  R+K G TP   A   G+ E+ ++L  KGADVNA
Sbjct: 56  EIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  108 bits (273), Expect = 2e-28
 Identities = 44/119 (36%), Positives = 61/119 (51%), Gaps = 9/119 (7%)

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
           G    ++   + NT L  A   G  E V  LL + A+V  R+K G TPL  AA  G+ E+
Sbjct: 1   GHMWGSK---DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57

Query: 229 GRVLLDKGADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPL 285
            ++LL KGADVNA     S+D  T   +A   GH   V+LL +KGA V  ++   +   
Sbjct: 58  VKLLLAKGADVNA----RSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 95.9 bits (240), Expect = 6e-24
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 8/105 (7%)

Query: 236 GADVNAPPVPSSRD--TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH 293
           G          S+D  T L  AA  GH   V+ LLSKGA V  ++K GN+PL LAA  GH
Sbjct: 1   GHMWG------SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54

Query: 294 LSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
             +V+LL   GAD++++     +    A + GH + V+ +    A
Sbjct: 55  AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  114 bits (289), Expect = 9e-31
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 220 AASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNK 279
            +S  +      L+ +G+ + +          L  AA  G    V +L++ GA V  K+K
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS-----DLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55

Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
            G++PL LAA  GHL VV+LL + GAD+ +QD    +    +   G+      +
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  111 bits (281), Expect = 1e-29
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 18  ACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERT 77
             +  H      L+ RG+ +          L+ AA AG D  V IL+ + AD+ A+ +  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-N 56

Query: 78  KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
             TPL LA   G  EVV+LLL  GA+   ++    T   ++   G  ++ ++L
Sbjct: 57  GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  104 bits (262), Expect = 5e-27
 Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 39/148 (26%)

Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT 212
            + + H      L+  GS + +    +    L  A   G+ + V +L+   A+V  + K 
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS----DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G TPL  AA  G++EV                                   V+LLL  GA
Sbjct: 57  GSTPLHLAARNGHLEV-----------------------------------VKLLLEAGA 81

Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELL 300
            V  ++K G +   ++ + G+  + E+L
Sbjct: 82  DVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  103 bits (260), Expect = 9e-27
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
            +S  + +    L+  G+ + S          L+ AA  G    V++L+  G+D+ A+ +
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD-----LGKKLLEAARAGQDDEVRILMANGADVAAK-D 54

Query: 178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
            N +T L LA   G  EVV LLL+  A+V  + K G T    +   G  ++  +L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 92.6 bits (231), Expect = 7e-23
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 8   ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
            S+    L  A   G ++ V +L++ GAD+  +DK G TPL LAA  GH +VV +LL   
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 68  ADMEAQSERTKDTPLSLACSGGRYEVVELL 97
           AD+ AQ +  K T   ++   G  ++ E+L
Sbjct: 81  ADVXAQDKFGK-TAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 61.8 bits (151), Expect = 5e-12
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           DV    + N  T L LA   GH E+V+LLL  GAD+  +DK G T   ++   G++ + +
Sbjct: 49  DVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAE 107

Query: 62  IL 63
           IL
Sbjct: 108 IL 109

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  121 bits (304), Expect = 1e-30
 Identities = 51/295 (17%), Positives = 96/295 (32%), Gaps = 35/295 (11%)

Query: 4   DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPL-ILAATAGHDKVVDI 62
           D+E +   +  L        +E+   L +  ++              ++  +   +V D 
Sbjct: 56  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 115

Query: 63  LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG 122
             N + ++    +   +TPL    S    E+V+ L+  G+N+ + +    + L  A    
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175

Query: 123 ----YVNIIKLLLTHGAEINSRTGSKLGISPL----MLAAMNGHTAAVKLLLDMGSDINA 174
                     LL      +       +  + L    + + M G +AA K  LD+      
Sbjct: 176 NNYDSGTFEALLDYLYPCLILED--SMNRTILHHIIITSGMTGCSAAAKYYLDILM---- 229

Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
                               +V        +  +  ++             +E   +   
Sbjct: 230 ------------------GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI 271

Query: 235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
               +NA    S+ DT L IAA  G+   V+ LL  GA   + NK G  P+   A
Sbjct: 272 IANMLNAQ--DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  109 bits (274), Expect = 2e-26
 Identities = 44/296 (14%), Positives = 95/296 (32%), Gaps = 33/296 (11%)

Query: 25  ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSL 84
           ++++ L S   +   +  K    L         ++   L N  ++  ++   +      +
Sbjct: 44  KIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHV 103

Query: 85  ACSGGRYEVVELLLTRGAN-KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS 143
           +      EV +       N     +    TPL    S   + ++K L+ HG+        
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD-- 161

Query: 144 KLGISPLMLAAMNGHTAAVK----LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
            +G S L+ A  + +         LL  +   +  + ++   T L        H      
Sbjct: 162 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE-DSMNRTIL--------H------ 206

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVG-RVLLDKGADVNAPPVPSSRD--TALTIAA 256
                   H   T       AA+  Y+++    ++ K                       
Sbjct: 207 --------HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258

Query: 257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
                  ++L       +  ++  G++ L +AA  G++S+V+ L  +GAD    + 
Sbjct: 259 KDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  108 bits (270), Expect = 5e-26
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 37/230 (16%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDK--- 58
           +++   + + +T L    +  + ELV+ L+  G++  + D  G + L+ A  + ++    
Sbjct: 122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG 181

Query: 59  -VVDILLNHKADMEAQSERTKD----TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYT 113
               +L      +       +D    T L                           + Y 
Sbjct: 182 TFEALLDYLYPCLIL-----EDSMNRTILHHIII------------TSGMTGCSAAAKY- 223

Query: 114 PLSLAASGGYVNIIKLLLTHGAEINSRT--GSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
                       ++  ++              +   +       +     + L   + + 
Sbjct: 224 --------YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 275

Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAA 221
           +NAQ   N +T L +A   G   +V  LLD  A+     K+GL P+   A
Sbjct: 276 LNAQDS-NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 97.8 bits (243), Expect = 2e-22
 Identities = 33/248 (13%), Positives = 70/248 (28%), Gaps = 31/248 (12%)

Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
             L          +   L    +  NS  G         ++  +          +   ++
Sbjct: 65  AFLQRLLFPEIQEMPTSLNNDSSNRNSE-GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL 123

Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG----YVEV 228
           N  ++ + NT L         E+V  L+   +N  +    G + L++A            
Sbjct: 124 NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF 183

Query: 229 GRVLLDKGADVNAPPVPSSRD----TALTIAADKGHCRF------------VELLLSKGA 272
             +L      +         D    T L                       +  ++ K  
Sbjct: 184 EALLDYLYPCLIL------EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 237

Query: 273 QVEVKNKKGNSPLWLAANGGH----LSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
           +                NG      L  ++L       +++QD+   +CL  A R G++ 
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297

Query: 329 AVRWMVNH 336
            V  ++++
Sbjct: 298 IVDALLDY 305

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  111 bits (281), Expect = 7e-30
 Identities = 47/93 (50%), Positives = 59/93 (63%), Gaps = 2/93 (2%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G TPL  AA  G++EV ++LL+ GADVNA     +  T L +AA  GH   V+LLL  GA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
            V  K+K G +PL LAA  GHL VV+LL + GA
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  107 bits (271), Expect = 2e-28
 Identities = 47/92 (51%), Positives = 57/92 (61%), Gaps = 5/92 (5%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           T L LA   GH E+V+LLL  GAD+  +DK G TPL LAA  GH +VV +LL   AD+ A
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 73  QSERTKD--TPLSLACSGGRYEVVELLLTRGA 102
           +    K+  TPL LA   G  EVV+LLL  GA
Sbjct: 64  K---DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  102 bits (258), Expect = 1e-26
 Identities = 44/90 (48%), Positives = 59/90 (65%), Gaps = 2/90 (2%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
           TPL LA   G  EVV+LLL  GA+   ++ +  TPL LAA  G++ ++KLLL  GA++N+
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
           +   K G +PL LAA NGH   VKLLL+ G
Sbjct: 64  KD--KNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  101 bits (254), Expect = 4e-26
 Identities = 46/92 (50%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
           G +PL LAA NGH   VKLLL+ G+D+NA+ + N  T L LA   G  EVV LLL+  A+
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 206 VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA 237
           V  + K G TPL  AA  G++EV ++LL+ GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 99.4 bits (249), Expect = 2e-25
 Identities = 38/87 (43%), Positives = 54/87 (62%)

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
           T L +AA  GH   V+LLL  GA V  K+K G +PL LAA  GHL VV+LL + GAD+++
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           +D    + L  A R GH++ V+ ++  
Sbjct: 64  KDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 95.5 bits (239), Expect = 5e-24
 Identities = 46/93 (49%), Positives = 61/93 (65%), Gaps = 3/93 (3%)

Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
            TPL LAA  G++ ++KLLL  GA++N++   K G +PL LAA NGH   VKLLL+ G+D
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKD--KNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKA 204
           +NA+ + N  T L LA   G  EVV LLL+  A
Sbjct: 61  VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 58.1 bits (142), Expect = 5e-11
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           G +PL LAA  GHL VV+LL + GAD++++D    + L  A R GH++ V+ ++   A
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 77.0 bits (189), Expect = 9e-16
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 6/114 (5%)

Query: 1   MDVDSETESNHDTALTLACAGG---HEELVELLLSRGADIEHRDKKGFTPLILAATAGHD 57
               +      +TAL LA          +V+ L+    +++ +  KG T L       + 
Sbjct: 159 KIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218

Query: 58  KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANK--EHRNV 109
           + + +LL  KA +E  +E  + TPL +A         ELL    + +   H +V
Sbjct: 219 ECLKLLLRGKASIEIANESGE-TPLDIAKRLKHEHCEELLTQALSGRFNSHVHV 271

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 68.9 bits (168), Expect = 4e-13
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 233 LDKGADVNAPPVPSSRDTALTIA---ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
           +D    +         +TAL +A    D+     V+ L+     ++ +  KG++ L    
Sbjct: 154 VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCC 213

Query: 290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
              +   ++LL +  A I+  +    + L  A R  H     
Sbjct: 214 LTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 10/123 (8%)

Query: 18  ACAGGHEELVELLLSRGADIE------HRDKKGFTPLILAATAG---HDKVVDILLNHKA 68
           A        +    + G D+       +  +   T L LA  +       +VD L+ +  
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196

Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
           +++ Q+ +   T L   C     E ++LLL   A+ E  N S  TPL +A    + +  +
Sbjct: 197 NLDKQTGK-GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

Query: 129 LLL 131
           LL 
Sbjct: 256 LLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 64.6 bits (157), Expect = 1e-11
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 80  TPLSLACSGG---RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAE 136
           T L LA          +V+ L+    N + +     T L           +KLLL   A 
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230

Query: 137 INSRTGSKLGISPLMLAAMNGHTAAVKLLL 166
           I     ++ G +PL +A    H    +LL 
Sbjct: 231 IEIA--NESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 8/158 (5%)

Query: 161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEA 220
           A K   D  + +++  E  +   +          V        AN     +T L   + +
Sbjct: 120 ARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRS 179

Query: 221 ASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK 280
                + +   L+    +++         TAL       +   ++LLL   A +E+ N+ 
Sbjct: 180 VDRTSLHIVDFLVQNSGNLDKQT--GKGSTALHYCCLTDNAECLKLLLRGKASIEIANES 237

Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           G +PL +A    H    ELL        +   R  S +
Sbjct: 238 GETPLDIAKRLKHEHCEELL------TQALSGRFNSHV 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 4/104 (3%)

Query: 133 HGAEINSRTGSKLGISPLMLAAMNG---HTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
              +I    G +   + L LA  +        V  L+    +++ Q     +TAL   C 
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCL 214

Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL 233
               E + LLL  KA++E   ++G TPL  A    +     +L 
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.4 bits (172), Expect = 2e-13
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 4   DSETESNHDTALTLACAGGHE---ELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             + ++  +  L LA    ++    LV+ ++  G  ++ +   G T L  AA       +
Sbjct: 183 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 242

Query: 61  DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANK 104
            +LL  +A +   +E  + T L +A      E  ELL    A  
Sbjct: 243 KLLLKGRALVGTVNEAGE-TALDIARKKHHKECEELLEQAQAGT 285

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.9 bits (155), Expect = 3e-11
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 232 LLDKGADVNAPP----VPSSRDTALTIA---ADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
               G D   P       +  +  L +A   A++     V+ ++  G  ++ K   GN+ 
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229

Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAV 330
           L  AA       ++LL K  A + + +    + L  A +K H +  
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 62.7 bits (152), Expect = 7e-11
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 29  LLLSRGADI------EHRDKKGFTPLILAATAGHDK---VVDILLNHKADMEAQSERTKD 79
              + G D                 L LA    +     +VD ++ +   ++A++    +
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD-GN 227

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
           T L  A    + + ++LLL   A     N +  T L +A    +    +LL
Sbjct: 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 103 NKEHRNVSDYTPLSLA---ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
                   +   L LA   A+   + ++  ++ +G  ++++     G + L  AA+    
Sbjct: 182 PGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD--GNTALHYAALYNQP 239

Query: 160 AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN 205
             +KLLL   + +    E    TAL +A  +   E   LL   +A 
Sbjct: 240 DCLKLLLKGRALVGTVNEAGE-TALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            +D++  ++ +TAL  A      + ++LLL   A +   ++ G T L +A    H +  +
Sbjct: 218 HLDAKA-ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276

Query: 62  ILLNHKAD 69
           +L   +A 
Sbjct: 277 LLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 59.2 bits (143), Expect = 1e-09
 Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 67  KADMEAQSERTKDTPLSLACS---GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
           +      ++  ++  L LA          +V+ ++  G + + +     T L  AA    
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 238

Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
            + +KLLL   A + +   +  G + L +A    H    +LL
Sbjct: 239 PDCLKLLLKGRALVGTVNEA--GETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG 271
             L   ++ A+   + +   ++  G  ++A    +  +TAL  AA       ++LLL   
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTALHYAALYNQPDCLKLLLKGR 249

Query: 272 AQVEVKNKKGNSPLWLAANGGHLSVVELL 300
           A V   N+ G + L +A    H    ELL
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELL 278

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 71.0 bits (173), Expect = 2e-13
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 5   SETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILL 64
                ++ T L  A A       E LL  GA++   D  G  PL  A   GH  +  + L
Sbjct: 229 VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL 288

Query: 65  NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV 124
              AD+ A+    +  PL++A      ++V LL  R A       +            + 
Sbjct: 289 KRGADLGARDSEGR-DPLTIAMETANADIVTLL--RLAKMREAEAAQGQAGDETYLDIFR 345

Query: 125 NIIKLLLTHGAEINSRT 141
           +   +      +++ R+
Sbjct: 346 DFSLMASDDPEKLSRRS 362

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 69.0 bits (168), Expect = 8e-13
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 1/120 (0%)

Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
              +     +  +   L HGA++N   G +   +PL+ A       A + LL  G+++N 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
             ++     L  A   G   +  L L R A++  R   G  PL  A      ++  +L  
Sbjct: 264 A-DSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 67.9 bits (165), Expect = 2e-12
 Identities = 30/114 (26%), Positives = 39/114 (34%)

Query: 213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA 272
           G      +     +      L  GADVN         T L  A         E LL  GA
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA 259

Query: 273 QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
            V   +  G  PL  A   GH  +  L  K GAD+ ++D+     L  A    +
Sbjct: 260 NVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.5 bits (151), Expect = 1e-10
 Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 3/118 (2%)

Query: 51  AATAGHDKVVDILLNHKAD-MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNV 109
           +        +   L H AD       +   TPL  A +       E LL  GAN    + 
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266

Query: 110 SDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           +   PL  A   G+  +  L L  GA++ +R     G  PL +A    +   V LL  
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGAR--DSEGRDPLTIAMETANADIVTLLRL 322

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)

Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
           N  +  +   TPL++A +   +     LL  GA+VN     S+    L  A   GH    
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD--SAGRGPLHHATILGHTGLA 284

Query: 265 ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            L L +GA +  ++ +G  PL +A    +  +V LL
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 58.6 bits (141), Expect = 2e-09
 Identities = 31/117 (26%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRN-TALTLACFQGRHEVVSLLLDRKANVEHRAK 211
           +        +   L  G+D+N       N T L  A           LL   ANV     
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS 266

Query: 212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL 268
            G  PL  A   G+  +  + L +GAD+ A    S     LTIA +  +   V LL 
Sbjct: 267 AGRGPLHHATILGHTGLACLFLKRGADLGA--RDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 5/142 (3%)

Query: 245 PSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN--KKGNSPLWLAANGGHLSVVELLCK 302
                     +        +   L+ GA V   N  +   +PL  A     L   E L +
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256

Query: 303 HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKC 362
           +GA+++  D+     L  A   GH       +   A   +     R         +    
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR---DPLTIAMETAN 313

Query: 363 QECSMVIRVAKNQQAERANKNA 384
            +   ++R+AK ++AE A   A
Sbjct: 314 ADIVTLLRLAKMREAEAAQGQA 335

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 7/149 (4%)

Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
                Q   R  K    +          + +  A +  ++E  +  ++E K +K+ A   
Sbjct: 829 IYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIA-VL 887

Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
            ++  R+ K  +     K+  +   E        +S  A QA+ +  +      +  E +
Sbjct: 888 LQKYNRILKKLENWATTKSVYLGSNET------GDSITAVQAKLKNLEAFDGECQSLEGQ 941

Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
              +      +  E+       + E  + 
Sbjct: 942 SNSDLLSILAQLTELNYNGVPELTERKDT 970

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 16/155 (10%), Positives = 42/155 (27%), Gaps = 8/155 (5%)

Query: 370 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 429
           +  K  +     +  + L    +  + +    +    R+           + +   +  E
Sbjct: 809 KEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIK----REPFVAPAGLTPNEIDSTWSALE 864

Query: 430 EEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
           + E       +   +  K   +LL++      R   K    A  +               
Sbjct: 865 KAEQEHAEALRIELKRQKKIAVLLQKY----NRILKKLENWATTKSVYLGSNETGDSITA 920

Query: 490 KAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
              + +  E  + E Q +EG+   +        + 
Sbjct: 921 VQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTE 955

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 12/163 (7%)

Query: 368 VIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK--------KQKKLEK 419
           + R  +  Q     + +    +  D  +  +    A +  K+  K        + + +  
Sbjct: 772 LKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYN 831

Query: 420 KEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDM----EKWREESKRAAQARKRE 475
             + +  + + E  +  A     E  +  + +   E +         +  K+ A   ++ 
Sbjct: 832 SLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKY 891

Query: 476 RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
            +  KKLE     +       E  + +   + + + +E    E
Sbjct: 892 NRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 11/146 (7%), Positives = 40/146 (27%), Gaps = 18/146 (12%)

Query: 356  KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
            K++    Q+ + +++  +N    ++    +    +       +     A   + +  + +
Sbjct: 882  KKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQ 941

Query: 416  KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 475
                       + E                       + EL   K    +++    +   
Sbjct: 942  SNSDLLSILAQLTELNYN------------------GVPELTERKDTFFAQQWTGVKSSA 983

Query: 476  RKKQKKLEKKEEKRKAMEEEEEEEEE 501
               +  L  + E+ + +E+       
Sbjct: 984  ETYKNTLLAELERLQKIEDLHHHHHH 1009

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 33/159 (20%)

Query: 393 MEKWREE-----------SKRAAQARKRERKKQKKLEKKEEKR----------------- 424
           +E+ RE+            KRA +  +    KQ  LE ++                    
Sbjct: 754 IEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKK 813

Query: 425 -KAMEEEEEVIRVAKN----QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 479
            +   + +EV  +       Q   R  K    +          + +  A +  ++E  + 
Sbjct: 814 TEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEA 873

Query: 480 KKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
            ++E K +K+ A+  ++      +++             
Sbjct: 874 LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSN 912

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 4   DSETESNHDTALTLACA---GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
             + ++  +  L LA          LV+ ++  G  ++ +   G T L  AA       +
Sbjct: 164 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 223

Query: 61  DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
            +LL  +A +   +E  +   L +A      E  ELL
Sbjct: 224 KLLLKGRALVGTVNEAGET-ALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 232 LLDKGADVNAP-PVPSSRD---TALTIA---ADKGHCRFVELLLSKGAQVEVKNKKGNSP 284
               G D   P P P ++      L +A   A++     V+ ++  G  ++ K   GN+ 
Sbjct: 151 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210

Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
           L  AA       ++LL K  A + + +    + L  A +K H +   
Sbjct: 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 29  LLLSRGADI------EHRDKKGFTPLILAATAGHDK---VVDILLNHKADMEAQSERTKD 79
              + G D                 L LA    +     +VD ++ +   ++A++    +
Sbjct: 150 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD-GN 208

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
           T L  A    + + ++LLL   A     N +  T L +A    +    +LL
Sbjct: 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 10/126 (7%)

Query: 48  LILAATAGHDKVVDILLNHKADM-----EAQSERTKDTPLSLAC---SGGRYEVVELLLT 99
           L  A        V     +  D         ++  ++  L LA    +     +V+ ++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT 159
            G + + +     T L  AA     + +KLLL   A     T ++ G + L +A    H 
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA--LVGTVNEAGETALDIARKKHHK 253

Query: 160 AAVKLL 165
              +LL
Sbjct: 254 ECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 30/156 (19%), Positives = 48/156 (30%), Gaps = 37/156 (23%)

Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQI-----ETNRNTALTLACFQGRHEVVSLLLDRKA 204
           L  A  N    +V      G D    +     +      L LA                 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAV---------------- 179

Query: 205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFV 264
                         + A+   + +   ++  G  ++A    +  +TAL  AA       +
Sbjct: 180 --------------KVANQASLPLVDFIIQNGGHLDA--KAADGNTALHYAALYNQPDCL 223

Query: 265 ELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
           +LLL   A V   N+ G + L +A    H    ELL
Sbjct: 224 KLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 60.6 bits (146), Expect = 1e-09
 Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 10/222 (4%)

Query: 297 VELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDK 356
           V   CK  A         V+     F K   + +R  V               +    D+
Sbjct: 568 VGDACKAIASRVRGAVASVT--FDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQ 625

Query: 357 ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 416
            +     +  +V+     Q  E  ++     L+          +     A K E ++ ++
Sbjct: 626 AVFP---QNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQ 682

Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
             +   +R+ + ++ E  +  K      A       +        + E++  A+A + E 
Sbjct: 683 EARGRLERQKILDQSEAEKARKELLELEAMS-----MAVESTGNAKAEAESRAEAARIEG 737

Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
           +      K + +  A+E E E E   +V+E+E      + E 
Sbjct: 738 EGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLEL 779

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 28/158 (17%), Positives = 51/158 (32%)

Query: 357 ELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKK 416
           E+    QE +      + +Q  R       +L++ + EK R+E                 
Sbjct: 663 EITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNA 722

Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
             + E + +A   E E   +    +A+         LE +   +  E     AQ      
Sbjct: 723 KAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVS 782

Query: 477 KKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
           K Q+    + +K K M E        ++     EM  +
Sbjct: 783 KAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 17/86 (19%), Positives = 42/86 (48%), Gaps = 18/86 (20%)

Query: 425 KAMEEEEEVIRVAKNQQAERANKNANILLEELD------MEKWREESKRAAQARKRERKK 478
             + +E E IR  + +Q +R        L+ELD       ++WRE++K+  +   + + +
Sbjct: 78  DRLTQEPESIRKWREEQRKR--------LQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129

Query: 479 QKKLEKKEEKRKAMEEE--EEEEEEV 502
           Q  +EK +   +  ++   ++ + ++
Sbjct: 130 Q--VEKNKINNRIADKAFYQQPDADI 153

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.9 bits (95), Expect = 4e-04
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 360 DKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEK 419
           D+  +    IR  + +Q +R        L+ELD      E +   +A+K   +  ++  +
Sbjct: 78  DRLTQEPESIRKWREEQRKR--------LQELDAASKVMEQEWREKAKKDLEEWNQRQSE 129

Query: 420 KEEKRKAM--EEEEEVIR 435
           + EK K      ++   +
Sbjct: 130 QVEKNKINNRIADKAFYQ 147

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 24/152 (15%), Positives = 73/152 (48%), Gaps = 3/152 (1%)

Query: 374  NQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEV 433
             Q+ E   K+  +   +   +K   E K   Q   +  +++  L++K +    +  E E 
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 434  IRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER--KKQKKLEKKEEKRKA 491
            +RV    + +   +  + +   ++ E+ R +  +A + + +++    +++LE++E  R+ 
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973

Query: 492  MEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
            ++ E+   +  +++++E +++  E + N +  
Sbjct: 974  LQLEKVTADG-KIKKMEDDILIMEDQNNKLTK 1004

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 26/162 (16%), Positives = 71/162 (43%), Gaps = 9/162 (5%)

Query: 369  IRVAKNQQAERANKNANILLEELDMEK-WREESKRAAQARKRERKKQ---KKLEKK-EEK 423
            ++      AE       +  ++ ++E+   E   R  +  +R ++ Q   KK++++  + 
Sbjct: 901  LQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL 960

Query: 424  RKAMEEEEEVIRVAKNQQAERANKNANILLEELDM--EKWREESKRAAQARKRERKKQKK 481
             + +EEEE   +  + ++     K    + +++ +  ++  + +K      +R       
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKK-MEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 482  LEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHS 523
            L ++EEK K + + + + E   + E+E  + +EE    ++  
Sbjct: 1020 LAEEEEKAKNLTKLKNKHES-MISELEVRLKKEEKSRQELEK 1060

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 34/178 (19%), Positives = 73/178 (41%), Gaps = 6/178 (3%)

Query: 345  EMTRYIQTVND-KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 403
            EM    + +   KE   K +     +     Q  E  N     L  E ++    EE +  
Sbjct: 858  EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917

Query: 404  AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
              A+K+E ++      + E R   EEE      A+ ++ ++   +    LEE +  + + 
Sbjct: 918  LAAKKQELEEILH---EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974

Query: 464  ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
            + ++   A  + +K +  +   E++   + +E +  EE  V ++   + EEE +  ++
Sbjct: 975  QLEK-VTADGKIKKMEDDILIMEDQNNKLTKERKLLEE-RVSDLTTNLAEEEEKAKNL 1030

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 30/180 (16%), Positives = 78/180 (43%), Gaps = 13/180 (7%)

Query: 356  KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
             EL  + +E  + +   K +  E  ++    + EE +  +  +  K+  Q +  + ++Q 
Sbjct: 905  TELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ- 963

Query: 416  KLEKKEEKRKAMEEE----EEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
             LE++E  R+ ++ E    +  I+  ++      ++N  +  E   +E+   +       
Sbjct: 964  -LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 472  RKRE----RKKQKKLEKK-EEKRKAMEEEEEEEEEVE--VQEVEGEMMEEETEENDMHSS 524
             + +     K + K E    E    +++EE+  +E+E   +++EGE  +   +  ++ + 
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 23/166 (13%), Positives = 65/166 (39%), Gaps = 8/166 (4%)

Query: 355  DKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQ 414
            ++E+  K +E        +  +AE         LE+   +   E++    + +       
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKE------LEQKHTQLCEEKNLLQEKLQAETELYA 909

Query: 415  KKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKR 474
            +  E +       +E EE++   + +  E   ++  +  E+  M++   + +   +  + 
Sbjct: 910  EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969

Query: 475  ERKK--QKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
             R+K   +K+    + +K  ++    E++      E +++EE   +
Sbjct: 970  ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 23/123 (18%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
                       R+ ++ +  +++ ++ K  +++ E       Q+  +  +  N+L    
Sbjct: 842 LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL---- 897

Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEE-EEEEEEVEVQEVEGEMMEEE 515
             EK + E++  A+A +   +   K ++ EE    ME   EEEEE  +  + E + M+++
Sbjct: 898 -QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 516 TEE 518
             +
Sbjct: 957 MLD 959

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 26/161 (16%), Positives = 64/161 (39%), Gaps = 16/161 (9%)

Query: 372  AKNQQAERANKNANILLEELD-----MEKWREESKRAAQARKRERK---------KQKKL 417
             K +   +       ++ EL+      EK R+E ++  +  + E           + +  
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084

Query: 418  EKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERK 477
            E K +  K  EE +  +   +++ +++ N    I   E  +   +E+ +    AR +  K
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEK 1144

Query: 478  KQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
            +++ L ++ E  K   E E+  +    Q+       ++ ++
Sbjct: 1145 QKRDLSEELEALK--TELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 30/166 (18%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 356  KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
            ++L  +       I+  ++      ++N  +  E   +E   E           E +K K
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE---ERVSDLTTNLAEEEEKAK 1028

Query: 416  KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRE 475
             L K + K ++M  E E     + ++ E++ +    +  +L+ E   +  ++ A+ + + 
Sbjct: 1029 NLTKLKNKHESMISELE----VRLKKEEKSRQELEKIKRKLEGES-SDLHEQIAELQAQI 1083

Query: 476  RKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
             + + +L KKEE+ +A     E+E   +      ++ E E+  +D+
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETS-QKNNALKKIRELESHISDL 1128

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 372  AKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
             +               + L   K + ES  +    + +++++ + E ++ KRK   E  
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070

Query: 432  EVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKA 491
            ++       QA+ A   A +  +E +++      +     +    KK ++LE       +
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELES----HIS 1126

Query: 492  MEEEEEEEEEVEVQEVEGEM--MEEETEE 518
              +E+ E E+    + E +   + EE E 
Sbjct: 1127 DLQEDLESEKAARNKAEKQKRDLSEELEA 1155

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 23/170 (13%), Positives = 72/170 (42%), Gaps = 10/170 (5%)

Query: 356  KELLDKCQE--CSMVIRVAKNQQAERANKNANILLEEL--DMEKWREESKRAAQARKRER 411
            K++  +  +    +    A  Q+ +     A+  ++++  D+    +++    +  K  +
Sbjct: 951  KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN---NKLTKERK 1007

Query: 412  KKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
              ++++          EE+ + +   KN+  E       + L++   EK R+E ++  + 
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKH-ESMISELEVRLKKE--EKSRQELEKIKRK 1064

Query: 472  RKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDM 521
             + E     +   + + + A  + +  ++E E+Q     + +E +++N+ 
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNA 1114

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 26/157 (16%), Positives = 62/157 (39%), Gaps = 7/157 (4%)

Query: 372  AKNQQAERANKNANILLEELDMEKWREESKRAAQAR----KRERKKQKKLEKKEEKRKAM 427
             K  Q +  +    +  EE   +K  +  K  A  +    + +    +    K  K + +
Sbjct: 950  KKKMQQQMLDLEEQLEEEEAARQK-LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008

Query: 428  EEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEE 487
             EE   +       AE   K  N+   +   E    E +   +  ++ R++ +K+++K E
Sbjct: 1009 LEER--VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 488  KRKAMEEEEEEEEEVEVQEVEGEMMEEETEENDMHSS 524
               +   E+  E + ++ E++ ++ ++E E     + 
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 27/152 (17%), Positives = 55/152 (36%), Gaps = 4/152 (2%)

Query: 369  IRVAKNQQAERANKNANILLEELDMEKW--REESKRAAQARKRERKKQKKLEKKEEKRKA 426
            +R    +        A + L+         RE  K   +AR  ER K+  +  + +  + 
Sbjct: 874  VRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQL 933

Query: 427  MEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKE 486
              + +E  +  K+   +  N       E   +    E  + + +  K    +   L+  E
Sbjct: 934  QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ--E 991

Query: 487  EKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
            E  K  +E  + + E +  E   +  + ETE+
Sbjct: 992  EIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.3 bits (131), Expect = 8e-08
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 6/174 (3%)

Query: 348 RYIQTVNDKELLDKCQECSMVIR---VAKNQQAERANKNANILLEELDMEKWREESKRAA 404
            Y+     + + D       ++R   V    Q       + I+ + +     R    R  
Sbjct: 828 MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887

Query: 405 QA-RKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
           +A    +   ++ + K+E K+  +E          +   E         ++E   ++++ 
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ-NKEYKS 946

Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETE 517
             ++          + +KL    E+ +  EEE +      V  ++ E+ +   E
Sbjct: 947 LLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATN-RVLSLQEEIAKLRKE 999

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 14/122 (11%), Positives = 44/122 (36%), Gaps = 4/122 (3%)

Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEK 460
           +R    RKR +  +      +   +      +   + +  ++    K+    L  +   +
Sbjct: 826 QRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHR 885

Query: 461 WREESKRAAQARKRERKKQKKLE--KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
             +      Q   R    +++L+  K E +     ++     E ++ +++   ++E+ +E
Sbjct: 886 TLKAI-VYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQ-RKIDEQNKE 943

Query: 519 ND 520
             
Sbjct: 944 YK 945

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 1/131 (0%)

Query: 394 EKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILL 453
            +   ++  A QA  R    + K +    + K++  ++ V          R  K    L 
Sbjct: 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894

Query: 454 EELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
                   + E K+     +   + +K     E K   ++ + +E+ + E + +  +M  
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK-EYKSLLEKMNN 953

Query: 514 EETEENDMHSS 524
            E   +     
Sbjct: 954 LEITYSTETEK 964

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 26/188 (13%), Positives = 57/188 (30%), Gaps = 14/188 (7%)

Query: 348 RYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDM--EKWREESKRAAQ 405
           RY++    +      +     I + K Q+     K    + +         R    R   
Sbjct: 799 RYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKY 858

Query: 406 ARKRERKKQKKLEKK----------EEKRKAMEEEEEVIRVAKNQQAERANKNANILLEE 455
                  K   ++K               KA+   +   R    ++  +  K     +E 
Sbjct: 859 QMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVER 918

Query: 456 LDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
                   E+K   Q +++  ++ K+ +   EK   +E     E E +++     +   E
Sbjct: 919 YKKLHIGLENKIM-QLQRKIDEQNKEYKSLLEKMNNLEITYSTETE-KLRSDVERLRMSE 976

Query: 516 TEENDMHS 523
            E  +  +
Sbjct: 977 EEAKNATN 984

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 21/137 (15%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 373  KNQQAERANKNANILLEELDMEKWREESKRAAQARK----RERKKQKKLEKKEEKRKAME 428
             N +   + +   +  +   +    EE+K A            K +K+L + + ++K +E
Sbjct: 952  NNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011

Query: 429  EEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEK 488
            E  +  +    Q      +      +   ++  +EE  R    + +E  +  + +  EE 
Sbjct: 1012 EWADKYKHETEQLVSELKE------QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEET 1065

Query: 489  RKAMEEEEEEEEEVEVQ 505
            ++   E +  +E +  Q
Sbjct: 1066 KQL--ELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 15/139 (10%), Positives = 49/139 (35%), Gaps = 5/139 (3%)

Query: 375  QQAERANKNANILLEELDMEKWREESK---RAAQARKRERKKQKKLEKKEEKRKAMEEEE 431
             +  +  K+    +  L++    E  K      + R  E + +    +    ++ + +  
Sbjct: 938  DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997

Query: 432  EVIR--VAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKR 489
            + +     + +  E          E+L  E   + +    +  +  R+   + ++  E  
Sbjct: 998  KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057

Query: 490  KAMEEEEEEEEEVEVQEVE 508
            +    EE ++ E+++ +  
Sbjct: 1058 EKKLVEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 21/153 (13%), Positives = 54/153 (35%), Gaps = 8/153 (5%)

Query: 356  KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
             +L  K  E     +  K+   +  N       E   +    E  + + +  K    +  
Sbjct: 931  MQLQRKIDE---QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987

Query: 416  KLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELD-----MEKWREESKRAAQ 470
             L+++  K +    + +  +    + A++       L+ EL      ++  +EE  R   
Sbjct: 988  SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047

Query: 471  ARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVE 503
             + +E  +  + +  EE ++   +  +E    +
Sbjct: 1048 DQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 20/169 (11%), Positives = 57/169 (33%), Gaps = 7/169 (4%)

Query: 356  KELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQK 415
            K+L  + +      ++    + +       I  +  + +   E+          E +K +
Sbjct: 907  KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966

Query: 416  KLEKK-----EEKRKAMEEEEEVIRVAKNQQAERANKNANI-LLEELDMEKWREESKRAA 469
               ++     EE + A      +       + E          +EE   +   E  +  +
Sbjct: 967  SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026

Query: 470  QARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEETEE 518
            + +++    + + E+   +     +E  E  E ++ E E + +E +  +
Sbjct: 1027 ELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE-ETKQLELDLND 1074

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 51.5 bits (122), Expect = 5e-07
 Identities = 21/172 (12%), Positives = 66/172 (38%)

Query: 344 QEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 403
             +   ++     +          +  + K    E         + +  ++     +   
Sbjct: 416 SPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAI 475

Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWRE 463
            Q  +   +K+K++E +  K ++ +   +++   + +  +   +      E L     + 
Sbjct: 476 LQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKM 535

Query: 464 ESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMMEEE 515
           E+ R    +++ER    KL+++E+  K   ++E    + E+Q+++ +M   +
Sbjct: 536 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 13/187 (6%)

Query: 344 QEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREESKRA 403
           ++        N +   D+C      +        E   K              ++     
Sbjct: 389 EKKRDDFCKQNQEASSDRCSG----LLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLK 444

Query: 404 AQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLE-ELDMEKWR 462
            +  +  RK  +  E  +   K+ E   + I        E+  +     ++ E      +
Sbjct: 445 KKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAK 504

Query: 463 EESKRAAQARKRERKKQKKLE--------KKEEKRKAMEEEEEEEEEVEVQEVEGEMMEE 514
              +   +  +   +K++  +        K E  R  + +E+E    +++QE E  + E 
Sbjct: 505 MLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEG 564

Query: 515 ETEENDM 521
             +E+ +
Sbjct: 565 FQKESRI 571

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 26/147 (17%)

Query: 359  LDKCQECSMVIRVAKNQ------QAERANKNANILLEELDMEKWREESKRAAQARKRERK 412
            L K ++    ++  +        + +  N+ AN  L+++  ++   E K+      + + 
Sbjct: 1926 LKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQL 1985

Query: 413  KQKKLEKKEEKRKAMEEEEEVIRV-AKNQQAERANKNANILLEELDMEKWREESKRAAQA 471
              +  E   +K KA  + E+        ++ E+    AN L  +                
Sbjct: 1986 DVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQ--------------- 2030

Query: 472  RKRERKKQKKLEKKEEKRKAMEEEEEE 498
                 +    +   E+     +EE   
Sbjct: 2031 ----DEIVATITALEKSIATYKEEYAT 2053

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 12/124 (9%)

Query: 417 LEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRER 476
           LEK  +         E ++ A           A I+    +  K ++     +     E 
Sbjct: 176 LEKLVDHHPEGLSAREAVKQA-----------AKIIYLAHEDNKEKDFELEISWCSLSET 224

Query: 477 KKQKKLEKKEEKRKAMEE-EEEEEEEVEVQEVEGEMMEEETEENDMHSSGGGRGEGEEGD 535
               K  K +  ++A++  ++E   + +  E + + +    +EN   ++       +EGD
Sbjct: 225 NGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGD 284

Query: 536 SGID 539
             ++
Sbjct: 285 IHLE 288

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	596
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
2etb_A	256	Transient receptor potential cation channel subfam	99.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.5e-54  Score=456.65  Aligned_cols=329  Identities=33%  Similarity=0.414  Sum_probs=212.4

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC   86 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~   86 (596)
                      .+..|.||||+||..|++++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~   88 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAA   88 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTSCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHH
Confidence            4566778888888888888888888888777777777778888888888888888888777776553 456777777777


Q ss_pred             HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy904           87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL  166 (596)
Q Consensus        87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll  166 (596)
                      ..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|++.+.+++....  .|.||||+|+..|+.+++++|+
T Consensus        89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll  166 (437)
T 1n11_A           89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK--KGFTPLHVAAKYGKVRVAELLL  166 (437)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCC--CCCCHHHHHHHcCCHHHHHHHH
Confidence            77777777777777777777777777777777777777777777776665544332  2555666666666655555555


Q ss_pred             hcCCCcccccccCCC---------------------------------cHHHHHHHcCCHHHHHHHHhcCCCcccccCCC
Q psy904          167 DMGSDINAQIETNRN---------------------------------TALTLACFQGRHEVVSLLLDRKANVEHRAKTG  213 (596)
Q Consensus       167 ~~~~~~~~~~~~~~~---------------------------------t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g  213 (596)
                      +.|++++.. +..|.                                 ||||+|+..++.+++++|++.|++++..+..|
T Consensus       167 ~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  245 (437)
T 1n11_A          167 ERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG  245 (437)
T ss_dssp             HTTCCTTCC-CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             hCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            555554443 33444                                 45555555555555555555555555555555


Q ss_pred             ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCc
Q psy904          214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH  293 (596)
Q Consensus       214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~  293 (596)
                      .||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus       246 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  323 (437)
T 1n11_A          246 VTPLHLAAQEGHAEMVALLLSKQANGNL--GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN  323 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCc
Confidence            5555555555555555555555555544  34455666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904          294 LSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       294 ~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  341 (596)
                      .++|++|+++|++++.++..|.||||+|+..|+.++|++|+++|+++.
T Consensus       324 ~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~  371 (437)
T 1n11_A          324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN  371 (437)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC
Confidence            666666666666666666666666666666666666666666666544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1e-53  Score=455.07  Aligned_cols=304  Identities=31%  Similarity=0.407  Sum_probs=243.0

Q ss_pred             HCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCC
Q psy904           32 SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD  111 (596)
Q Consensus        32 ~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g  111 (596)
                      +.|++++..+..|.||||+|+..|+.++|++|+++|++++.. +..+.||||+|+..|+.++|++|++.|++++..+..|
T Consensus         2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g   80 (437)
T 1n11_A            2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD   80 (437)
T ss_dssp             -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS
T ss_pred             CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Confidence            358899999999999999999999999999999999988764 5678999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcC
Q psy904          112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG  191 (596)
Q Consensus       112 ~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~  191 (596)
                      .||||+|+..|+.+++++|+++|++++.....  |.||||+|+..|+.+++++|++.+.+.+.. +..|.||||+|+..|
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~g  157 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANPNLATTA--GHTPLHIAAREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYG  157 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT--CCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCC--CCcHHHHHHHcCCHHHHHHHHhCCCCCcCC-CCCCCCHHHHHHHcC
Confidence            99999999999999999999999998876644  999999999999999999999999987765 667889999999999


Q ss_pred             CHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy904          192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG  271 (596)
Q Consensus       192 ~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g  271 (596)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|
T Consensus       158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  235 (437)
T 1n11_A          158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS--PAWNGYTPLHIAAKQNQVEVARSLLQYG  235 (437)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC--CCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999988887766  3455667777777776666666666666


Q ss_pred             CCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904          272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       272 ~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  341 (596)
                      ++++..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|+++.
T Consensus       236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  305 (437)
T 1n11_A          236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD  305 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC
Confidence            6666666666666666666666666666666666666666666666666666666666666666655443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.8e-45  Score=377.78  Aligned_cols=300  Identities=30%  Similarity=0.427  Sum_probs=251.1

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHC
Q psy904           10 NHDTALTLACAGGHEELVELLLSRGADIEHRDK-KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG   88 (596)
Q Consensus        10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~-~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   88 (596)
                      .|+|+||.||..|++++|++||+.|+++|..+. .|+||||+|+..|+.++|++|+++|++++.. +..+.++++.++..
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhh-ccCCCchhHHHHhc
Confidence            467899999999999999999999999988765 4899999999999999999999999888764 56788999999999


Q ss_pred             CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904           89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM  168 (596)
Q Consensus        89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~  168 (596)
                      +...++..++..+++++..+..|.||||+|+..|+.+++++|+.+|++++.......                       
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~-----------------------  159 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE-----------------------  159 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC------------------------
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcccc-----------------------
Confidence            999999999999999999999999999999999999999999998888765543210                       


Q ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccCCCChHHHHHHhcCc----HHHHHHHHhCCCCCCCCC
Q psy904          169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLD-RKANVEHRAKTGLTPLMEAASGGY----VEVGRVLLDKGADVNAPP  243 (596)
Q Consensus       169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~~  243 (596)
                        +. ...+..|.||||+|+..|+.+++++|++ .|++++..+..|.|+|+.++..+.    ..++++|+++|++++.  
T Consensus       160 --~~-~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~--  234 (337)
T 4g8k_A          160 --DQ-ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--  234 (337)
T ss_dssp             -------CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTC--
T ss_pred             --cc-ccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCC--
Confidence              00 1124567788888888888888888885 588888888889999888765443    4578899999999887  


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHC-CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904          244 VPSSRDTALTIAADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF  322 (596)
Q Consensus       244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~-g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~  322 (596)
                      .+..|.||||+|+..|+.+++++|+.. |++++.+|..|.||||+|+..|+.++|++|+++|++++..     +||++|+
T Consensus       235 ~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~  309 (337)
T 4g8k_A          235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTAR  309 (337)
T ss_dssp             CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHH
T ss_pred             cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHH
Confidence            557889999999999999999999985 7999999999999999999999999999999999988754     5999999


Q ss_pred             HcCCHHHHHHHHhCcCCCCCc
Q psy904          323 RKGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       323 ~~g~~~iv~~Ll~~~~~~~~~  343 (596)
                      .+|+.++|++|+++||++...
T Consensus       310 ~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          310 RNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HTTCHHHHHHHHHTTCCC---
T ss_pred             HcCCHHHHHHHHHCcCCCCCC
Confidence            999999999999999987643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.9e-45  Score=377.61  Aligned_cols=276  Identities=34%  Similarity=0.428  Sum_probs=236.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q psy904           43 KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG  122 (596)
Q Consensus        43 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g  122 (596)
                      .|.|+||.|+..|++++|++||++|++++...+..|.||||+|+..|+.++|++||++|++++..+..+.++++.++..+
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            46788999999999999999999998888776667889999999999999999999999999888888899999999999


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904          123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR  202 (596)
Q Consensus       123 ~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~  202 (596)
                      ...++..++..+.+++....  .|.|||++|+..|+.+++++|+..|++++.....                        
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~--~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~------------------------  157 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDF--YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT------------------------  157 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCT--TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC------------------------
T ss_pred             cchhhHHhhhccchhhhhcc--CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc------------------------
Confidence            99988888888888776654  4888888888888888888888888877654211                        


Q ss_pred             CCCcccccCCCChHHHHHHhcCcHHHHHHHHh-CCCCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHCCCCCCCC
Q psy904          203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLD-KGADVNAPPVPSSRDTALTIAADKGH----CRFVELLLSKGAQVEVK  277 (596)
Q Consensus       203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~----~~iv~~Ll~~g~di~~~  277 (596)
                      ..+....+..|.||||+|+..|+.++|++|++ .|++++.  .+..|.|+||.++..+.    ..++++|+++|++++.+
T Consensus       158 ~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~--~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~  235 (337)
T 4g8k_A          158 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR  235 (337)
T ss_dssp             C-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC--CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCC
T ss_pred             ccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc--cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCc
Confidence            12234456789999999999999999999995 6999887  66889999998876543    46889999999999999


Q ss_pred             CCCCChHHHHHHhcCcHHHHHHHHHC-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCchHH
Q psy904          278 NKKGNSPLWLAANGGHLSVVELLCKH-GADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEM  346 (596)
Q Consensus       278 d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~  346 (596)
                      |..|.||||+|+..|+.+++++|+.. |++++.+|..|.||||+|+..|+.++|++|+++|+++...+.+
T Consensus       236 d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~L  305 (337)
T 4g8k_A          236 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV  305 (337)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCCHH
T ss_pred             CCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCHH
Confidence            99999999999999999999999985 8999999999999999999999999999999999998876544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.1e-44  Score=369.63  Aligned_cols=311  Identities=28%  Similarity=0.330  Sum_probs=283.6

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC   86 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~-g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~   86 (596)
                      +..+.|+||.||..|++++|++|+.. +++++..|..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+
T Consensus        21 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~   99 (351)
T 3utm_A           21 GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred             ccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCcHHHHHH
Confidence            34577999999999999999999986 8999999999999999999999999999999999998765 568999999999


Q ss_pred             HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy904           87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL  166 (596)
Q Consensus        87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll  166 (596)
                      ..|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.....  |.+|+++++..+..+.+.+.+
T Consensus       100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--g~~~l~~a~~~~~~~~~~~~~  177 (351)
T 3utm_A          100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCH--GKSAVDMAPTPELRERLTYEF  177 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHCSSHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC--CCcchHHHhhhhhHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999998876644  899999999888888877765


Q ss_pred             hcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhc---CcHHHHHHHHhCCCCCCCCC
Q psy904          167 DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG---GYVEVGRVLLDKGADVNAPP  243 (596)
Q Consensus       167 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~  243 (596)
                      .             ..++..++..++...+..++..+......+..|.||||+|+..   +..+++++|++.|++++.  
T Consensus       178 ~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~--  242 (351)
T 3utm_A          178 K-------------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE--  242 (351)
T ss_dssp             H-------------HHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTC--
T ss_pred             c-------------ccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCC--
Confidence            3             2578889999999999999988777667788999999999999   668999999999999987  


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904          244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR  323 (596)
Q Consensus       244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~  323 (596)
                      .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++++..|..|.||+++|  
T Consensus       243 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a--  320 (351)
T 3utm_A          243 KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG--  320 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS--
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh--
Confidence            567899999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             cCCHHHHHHHHhCcCCC
Q psy904          324 KGHVKAVRWMVNHVAQF  340 (596)
Q Consensus       324 ~g~~~iv~~Ll~~~~~~  340 (596)
                        +..++++|.+.+...
T Consensus       321 --~~~~~~~l~~~~~~~  335 (351)
T 3utm_A          321 --NEAVQQILSESTPMR  335 (351)
T ss_dssp             --CHHHHHHHHHC----
T ss_pred             --hHHHHHHHHhccccc
Confidence              778999999887643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=4.6e-43  Score=349.77  Aligned_cols=273  Identities=31%  Similarity=0.456  Sum_probs=186.6

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHCCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHC
Q psy904           10 NHDTALTLACAGGHEELVELLLSRGADIEHR-DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG   88 (596)
Q Consensus        10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~-d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   88 (596)
                      +|.|+||.|+..|++++|++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHc
Confidence            4677888888888888888888888887776 667778888888888888888888877776553 45677777777777


Q ss_pred             CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904           89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM  168 (596)
Q Consensus        89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~  168 (596)
                      |+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++......    ..                  
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~----~~------------------  140 (285)
T 1wdy_A           83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK----ED------------------  140 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC----HH------------------
T ss_pred             CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH----HH------------------
Confidence            77777777777777777777777777777777777777777777776665443210    00                  


Q ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCc----HHHHHHHHhCCCCCCCCC
Q psy904          169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGY----VEVGRVLLDKGADVNAPP  243 (596)
Q Consensus       169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~g~~~~~~~  243 (596)
                          ....+..|.||||.|+..++.+++++|++. |++++..+..|.||||+|+..++    .+++++|++.|++++.  
T Consensus       141 ----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~--  214 (285)
T 1wdy_A          141 ----QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--  214 (285)
T ss_dssp             ----HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC--
T ss_pred             ----HHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC--
Confidence                000133455666666666666666666665 66666666666666666666666    6666666666666655  


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCC
Q psy904          244 VPSSRDTALTIAADKGHCRFVELLLS-KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQD  311 (596)
Q Consensus       244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~-~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~  311 (596)
                      .+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus       215 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            34556666666666666666666666 566666666666666666666666666666666666666554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-42  Score=344.32  Aligned_cols=273  Identities=34%  Similarity=0.432  Sum_probs=229.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcC
Q psy904           43 KGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGG  122 (596)
Q Consensus        43 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g  122 (596)
                      .|.||||+|+..|++++|++|++.|++++...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            46688888888888888888888888877766667788888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904          123 YVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR  202 (596)
Q Consensus       123 ~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~  202 (596)
                      +.+++++|+++|++++....  .|.||||+|+..|+.+++++|++.|++++......   .                   
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~---~-------------------  139 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDF--YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK---E-------------------  139 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCT--TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC---H-------------------
T ss_pred             CHHHHHHHHHcCCCCCccCc--ccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH---H-------------------
Confidence            88888888888777665543  37777777777777777777777777665431110   0                   


Q ss_pred             CCCcccccCCCChHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcHHHHHHHcCc----HHHHHHHHHCCCCCCCC
Q psy904          203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK-GADVNAPPVPSSRDTALTIAADKGH----CRFVELLLSKGAQVEVK  277 (596)
Q Consensus       203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~~~----~~iv~~Ll~~g~di~~~  277 (596)
                        .....+..|.||||+|+..|+.+++++|++. |++++.  .+..|.||||+|+..++    .+++++|+++|++++.+
T Consensus       140 --~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~  215 (285)
T 1wdy_A          140 --DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR  215 (285)
T ss_dssp             --HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred             --HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc--cCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc
Confidence              0112367799999999999999999999997 998887  56789999999999999    99999999999999999


Q ss_pred             CCCCChHHHHHHhcCcHHHHHHHHH-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904          278 NKKGNSPLWLAANGGHLSVVELLCK-HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       278 d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  343 (596)
                      |..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|+++|+++...
T Consensus       216 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence            9999999999999999999999999 89999999999999999999999999999999999987654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.4e-43  Score=362.92  Aligned_cols=313  Identities=20%  Similarity=0.232  Sum_probs=233.3

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCc
Q psy904           11 HDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR   90 (596)
Q Consensus        11 g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~   90 (596)
                      -..+|..|+..|+...+..++++...+...    .+++.-+...|+++++.+++....      +..|.||||+|+..++
T Consensus        37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~------~~~g~t~L~~Aa~~~~  106 (373)
T 2fo1_E           37 SQHSLLEASYDGYIKRQRNELQHYSLYPNP----QGYGNGNDFLGDFNHTNLQIPTEP------EPESPIKLHTEAAGSY  106 (373)
T ss_dssp             -------------------------------------------------------------------CCCHHHHHHHSSS
T ss_pred             cccccccccCCccccchhhhhhhhccccCc----cccCCCCCccccccccccccccCC------CCCCccHHHHHhcCCc
Confidence            345677788999999999999876665422    245677888899999998876543      4568899999999665


Q ss_pred             HHHHHHHHhCCCCccCCC-CCCCcHHHHHHhcCCHHHHHHHH--------hCCCCccccCCCCCCCcHHHHHHHcCCHHH
Q psy904           91 YEVVELLLTRGANKEHRN-VSDYTPLSLAASGGYVNIIKLLL--------THGAEINSRTGSKLGISPLMLAAMNGHTAA  161 (596)
Q Consensus        91 ~eivk~LL~~g~~~~~~d-~~g~t~L~~A~~~g~~eiv~~Ll--------~~g~~~~~~~~~~~g~t~L~~A~~~g~~ei  161 (596)
                       +++++|+.  .+++..+ ..|.||||+|+..|+.+++++|+        ..|++++..+.  .|.||||+|+..|+.++
T Consensus       107 -~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~--~g~TpL~~A~~~g~~~i  181 (373)
T 2fo1_E          107 -AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC--DENTPLMLAVLARRRRL  181 (373)
T ss_dssp             -CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT--TSCCHHHHHHHHTCHHH
T ss_pred             -hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC--CCCCHHHHHHHcChHHH
Confidence             78888865  4667777 78999999999999998777776        78999887764  49999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcC---CCcccccCCCChHHHHHHhcC---cHHHHHHHHhC
Q psy904          162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK---ANVEHRAKTGLTPLMEAASGG---YVEVGRVLLDK  235 (596)
Q Consensus       162 v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g---~~~~~~~~~g~t~L~~A~~~g---~~~iv~~Ll~~  235 (596)
                      |++|+++|++++.. +..|.||||+|+..|+.+++++|++.+   .+++..+..|.||||+|+..+   +.+++++|++.
T Consensus       182 v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~  260 (373)
T 2fo1_E          182 VAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK  260 (373)
T ss_dssp             HHHHHHTTCCSCCC-CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCccc-CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC
Confidence            99999999999876 678899999999999999999999988   799999999999999999988   89999999999


Q ss_pred             CCCCCCC------CCCCCCCcHHHHHHHcCcHHHHHHHHHCC-CCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcc
Q psy904          236 GADVNAP------PVPSSRDTALTIAADKGHCRFVELLLSKG-AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID  308 (596)
Q Consensus       236 g~~~~~~------~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g-~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  308 (596)
                      |++++..      ..+..|.||||+|+..|+.++|++|+++| ++++..|..|.||||+|+..|+.++|++|+++|++++
T Consensus       261 g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  340 (373)
T 2fo1_E          261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE  340 (373)
T ss_dssp             TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred             CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence            9998852      23568999999999999999999999875 9999999999999999999999999999999999999


Q ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          309 SQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       309 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      .+|..|.|||++|+.+|+.++|++|++++++
T Consensus       341 ~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          341 AVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             CCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            9999999999999999999999999999875

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7.1e-41  Score=344.51  Aligned_cols=295  Identities=31%  Similarity=0.357  Sum_probs=254.9

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC   86 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~   86 (596)
                      .+..|.||||+||..|++++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~-~~~g~t~L~~A~  132 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAM-DLWQFTPLHEAA  132 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999998764 567999999999


Q ss_pred             HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q psy904           87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLL  166 (596)
Q Consensus        87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll  166 (596)
                      ..|+.+++++|+++|++++..+..|.+|+++|+..+..+.+.+.+..              .++..++..++...+..++
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l  198 (351)
T 3utm_A          133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG--------------HSLLQAAREADLAKVKKTL  198 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc--------------cHHHHHHHhccHHHHHHHH
Confidence            99999999999999999999999999999999999988888887642              5788899999999999998


Q ss_pred             hcCCCcccccccCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCC
Q psy904          167 DMGSDINAQIETNRNTALTLACFQ---GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP  243 (596)
Q Consensus       167 ~~~~~~~~~~~~~~~t~L~~A~~~---~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~  243 (596)
                      ..+..... .+..+.||||+|+..   +..+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.  
T Consensus       199 ~~~~~~~~-~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~--  275 (351)
T 3utm_A          199 ALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA--  275 (351)
T ss_dssp             TTCCTTCC-CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred             Hhhccccc-CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--
Confidence            87654333 467788999999999   668999999999999999999999999999999999999999999999988  


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904          244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR  323 (596)
Q Consensus       244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~  323 (596)
                      .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|    +..++++|.+.+..   ....+.+++..|++
T Consensus       276 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~  348 (351)
T 3utm_A          276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASK  348 (351)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS----CHHHHHHHHHC--------------------
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhc
Confidence            568899999999999999999999999999999999999999998    67899999987643   23457788888888


Q ss_pred             cCC
Q psy904          324 KGH  326 (596)
Q Consensus       324 ~g~  326 (596)
                      .|.
T Consensus       349 ~gd  351 (351)
T 3utm_A          349 AGD  351 (351)
T ss_dssp             ---
T ss_pred             cCC
Confidence            763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-41  Score=351.95  Aligned_cols=282  Identities=20%  Similarity=0.224  Sum_probs=229.4

Q ss_pred             cHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHH
Q psy904           13 TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYE   92 (596)
Q Consensus        13 t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~e   92 (596)
                      +++..+...|+++++.+++..     ..+..|.||||+|+..|. +++++|+..  +++...+..|.||||+|+..|+.+
T Consensus        68 ~~~~~~~~~g~~~~~~~~~~~-----~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~  139 (373)
T 2fo1_E           68 GYGNGNDFLGDFNHTNLQIPT-----EPEPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAE  139 (373)
T ss_dssp             -------------------------------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCS
T ss_pred             ccCCCCCcccccccccccccc-----CCCCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHH
Confidence            456778888999999998754     456789999999999665 788888654  444444468999999999999998


Q ss_pred             HHHHHH--------hCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHH
Q psy904           93 VVELLL--------TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKL  164 (596)
Q Consensus        93 ivk~LL--------~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~  164 (596)
                      +|++|+        +.|++++..|..|.||||+|+..|+.++|++|+++|++++....  .|.||||+|+..|+.+++++
T Consensus       140 ~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~--~g~t~L~~A~~~g~~~~v~~  217 (373)
T 2fo1_E          140 KSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK--SERSALHQAAANRDFGMMVY  217 (373)
T ss_dssp             CCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCC--CCCCHHHHHHHCCCHHHHHH
Confidence            887776        89999999999999999999999999999999999999887654  49999999999999999999


Q ss_pred             HHhcC---CCcccccccCCCcHHHHHHHcC---CHHHHHHHHhcCCCccc--------ccCCCChHHHHHHhcCcHHHHH
Q psy904          165 LLDMG---SDINAQIETNRNTALTLACFQG---RHEVVSLLLDRKANVEH--------RAKTGLTPLMEAASGGYVEVGR  230 (596)
Q Consensus       165 Ll~~~---~~~~~~~~~~~~t~L~~A~~~~---~~~ii~~Ll~~g~~~~~--------~~~~g~t~L~~A~~~g~~~iv~  230 (596)
                      |+..+   .+++.. +..|.||||+|+..+   +.+++++|++.|++++.        .+..|.||||+|+..|+.++++
T Consensus       218 Ll~~~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~  296 (373)
T 2fo1_E          218 MLNSTKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK  296 (373)
T ss_dssp             HTTSHHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHH
T ss_pred             HHhcCccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHH
Confidence            99987   566665 678899999999998   89999999999999886        5678999999999999999999


Q ss_pred             HHHhCC-CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904          231 VLLDKG-ADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI  307 (596)
Q Consensus       231 ~Ll~~g-~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  307 (596)
                      +|++.+ ++++.  .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.++|++|+++|++.
T Consensus       297 ~Ll~~~~~~~n~--~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          297 YLVGEKGSNKDK--QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHSCCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHHhcCCCccC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            999875 88887  6688999999999999999999999999999999999999999999999999999999998763

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3e-40  Score=330.60  Aligned_cols=225  Identities=26%  Similarity=0.377  Sum_probs=141.0

Q ss_pred             cCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHH
Q psy904           75 ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAA  154 (596)
Q Consensus        75 ~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~  154 (596)
                      +..|.||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++....  .|.||||+|+
T Consensus        56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~--~g~t~L~~A~  133 (285)
T 3d9h_A           56 AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA--DWHTPLFNAC  133 (285)
T ss_dssp             SCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT--TCCCHHHHHH
T ss_pred             CccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC--CCCCHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555444332  2555666666


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHh
Q psy904          155 MNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD  234 (596)
Q Consensus       155 ~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  234 (596)
                      ..|+.+++++|++.|++++..  ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~  211 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQPE--SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE  211 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCS--CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            666666666666655554432  235667777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC-CCCcc
Q psy904          235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH-GADID  308 (596)
Q Consensus       235 ~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~  308 (596)
                      .|++++.   +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+  ++.+++++|+++ |+++.
T Consensus       212 ~ga~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~  281 (285)
T 3d9h_A          212 SGADVNQ---GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP  281 (285)
T ss_dssp             TTCCTTC---CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred             CCCCCCC---CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence            7777662   456677777777777777777777777777777777777777777  345677777765 55543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.4e-40  Score=329.42  Aligned_cols=258  Identities=26%  Similarity=0.332  Sum_probs=210.0

Q ss_pred             CCChHHHHHHHCCcHHHHHHHHhCC-----------CCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCC
Q psy904           77 TKDTPLSLACSGGRYEVVELLLTRG-----------ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKL  145 (596)
Q Consensus        77 ~~~t~L~~A~~~g~~eivk~LL~~g-----------~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~  145 (596)
                      .|.|+||+|+..|+...+..++..+           ..++..+..|.||||+|+..|+.+++++|++.|++++....+  
T Consensus        14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~--   91 (285)
T 3d9h_A           14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD--   91 (285)
T ss_dssp             ----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT--
T ss_pred             HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC--
Confidence            4556666666666654444433321           124567889999999999999999999999999998876644  


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      |.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++.|++++..+ .|.||||+|+..|+
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~  169 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGH  169 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTC
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCC
Confidence            999999999999999999999999998876 6788999999999999999999999999988644 59999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      .+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|+
T Consensus       170 ~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  246 (285)
T 3d9h_A          170 VECVNSLIAYGGNIDH--KISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGA  246 (285)
T ss_dssp             HHHHHHHHHTTCCTTC--CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999999999887  567899999999999999999999999999995 8899999999999999999999999999


Q ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHhC-cCCCCCc
Q psy904          306 DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH-VAQFPSD  343 (596)
Q Consensus       306 d~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~  343 (596)
                      +++.+|..|.|||++|+  ++.+++++|+++ |++++.+
T Consensus       247 d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~~  283 (285)
T 3d9h_A          247 DTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPKP  283 (285)
T ss_dssp             CTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-------
T ss_pred             CCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCCC
Confidence            99999999999999998  567999999998 7766543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.4e-40  Score=343.26  Aligned_cols=254  Identities=20%  Similarity=0.190  Sum_probs=185.9

Q ss_pred             ChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC
Q psy904           79 DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH  158 (596)
Q Consensus        79 ~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~  158 (596)
                      .||||+|+..|++++|++|++.|++++..+..|.||||+|+..|+.++|++|+++|++++..    .|.||||+|+..|+
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~   96 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW----HGQKPIHLAVMANK   96 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB----TTBCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc----CCCCHHHHHHHcCC
Confidence            34444444444444444444444444444444444444444444444444444444432221    14445555555555


Q ss_pred             HHHHHHHHhc----CCCccc----------------ccccCCCcHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCChH
Q psy904          159 TAAVKLLLDM----GSDINA----------------QIETNRNTALTLACFQG--RHEVVSLLLDRKANVEHRAKTGLTP  216 (596)
Q Consensus       159 ~eiv~~Ll~~----~~~~~~----------------~~~~~~~t~L~~A~~~~--~~~ii~~Ll~~g~~~~~~~~~g~t~  216 (596)
                      .+++++|++.    |.+++.                ..+..|.||||+|+..|  +.+++++|++.|++++..+..|.||
T Consensus        97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~  176 (364)
T 3ljn_A           97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP  176 (364)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCH
Confidence            5555555544    333332                13567889999999999  9999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHhCCCC-----CCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhc
Q psy904          217 LMEAASGGYVEVGRVLLDKGAD-----VNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG  291 (596)
Q Consensus       217 L~~A~~~g~~~iv~~Ll~~g~~-----~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~  291 (596)
                      ||+|+..|+.+++++|++.|++     ++.  .+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..
T Consensus       177 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~  254 (364)
T 3ljn_A          177 LMRAMEFRNREALDLMMDTVPSKSSLRLDY--ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA  254 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCSCSSSCCTTC--CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcccccccccccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            9999999999999999999888     666  567899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHCCCCccc------------CCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          292 GHLSVVELLCKHGADIDS------------QDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       292 g~~~iv~~Ll~~gad~~~------------~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      |+.++|++|+++|++++.            .+..++||++.|+..|+.+.+..|+..+.
T Consensus       255 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~  313 (364)
T 3ljn_A          255 AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL  313 (364)
T ss_dssp             CCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence            999999999999877533            45678899999999998888888887653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=6.3e-39  Score=315.23  Aligned_cols=216  Identities=28%  Similarity=0.328  Sum_probs=176.6

Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHH
Q psy904          121 GGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLL  200 (596)
Q Consensus       121 ~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll  200 (596)
                      .++.+++++|+..|++++... +..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|+
T Consensus        33 ~~~~~~v~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll  110 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILI  110 (253)
T ss_dssp             -------------------CC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             CCChHHHHHHHHccCCccccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHH
Confidence            347888888888888775432 234888999999999999999999988888776 677889999999999999999999


Q ss_pred             hcCC-CcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCC
Q psy904          201 DRKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNK  279 (596)
Q Consensus       201 ~~g~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~  279 (596)
                      +.+. +++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus       111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  188 (253)
T 1yyh_A          111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  188 (253)
T ss_dssp             HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            9887 8888899999999999999999999999999999887  567899999999999999999999999999999999


Q ss_pred             CCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904          280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF  340 (596)
Q Consensus       280 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  340 (596)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+|+.+|.......
T Consensus       189 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~~  249 (253)
T 1yyh_A          189 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH  249 (253)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-----
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999875543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.1e-40  Score=342.50  Aligned_cols=277  Identities=20%  Similarity=0.209  Sum_probs=207.3

Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904            6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA   85 (596)
Q Consensus         6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A   85 (596)
                      ..|.+|.||||+||..|++++|++|++.|++++..|..|.||||+|+..|+.++|++|+++|+++..   ..|.||||+|
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A   91 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLA   91 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHH
Confidence            3567788999999999999999999999999999999999999999999999999999999986544   4688999999


Q ss_pred             HHCCcHHHHHHHHhC----CCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCC-----CccccCCCCCCCcHHHHHHHc
Q psy904           86 CSGGRYEVVELLLTR----GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA-----EINSRTGSKLGISPLMLAAMN  156 (596)
Q Consensus        86 ~~~g~~eivk~LL~~----g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~-----~~~~~~~~~~g~t~L~~A~~~  156 (596)
                      +..|+.++|++|++.    |.+++.                       ++....     .+.....+..|.||||+|+..
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  148 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPES-----------------------LLNECDEREVNEIGSHVKHCKGQTALHWCVGL  148 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHH-----------------------HHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHH-----------------------HHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence            999999999999987    655543                       000000     000011222356666666666


Q ss_pred             C--CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCC-----cccccCCCChHHHHHHhcCcHHHH
Q psy904          157 G--HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN-----VEHRAKTGLTPLMEAASGGYVEVG  229 (596)
Q Consensus       157 g--~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~-----~~~~~~~g~t~L~~A~~~g~~~iv  229 (596)
                      |  +.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..|+.+++
T Consensus       149 g~~~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  227 (364)
T 3ljn_A          149 GPEYLEMIKILVQLGASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA  227 (364)
T ss_dssp             CGGGHHHHHHHHHHTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH
T ss_pred             CCchHHHHHHHHHcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH
Confidence            6  666666666666666554 45566777777777777777777776666     777777888888888888888888


Q ss_pred             HHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC------------CCCCCCChHHHHHHhcCcHHHH
Q psy904          230 RVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE------------VKNKKGNSPLWLAANGGHLSVV  297 (596)
Q Consensus       230 ~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~------------~~d~~g~TpL~~A~~~g~~~iv  297 (596)
                      ++|+++|++++.  .+..|.||||+|+..|+.+++++|+++|++++            ..+..|+|||++|+..|+.+.+
T Consensus       228 ~~Ll~~gad~~~--~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v  305 (364)
T 3ljn_A          228 MRFVEMGIDVNM--EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV  305 (364)
T ss_dssp             HHHHTTTCCTTC--CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHH
T ss_pred             HHHHHcCCCCCC--CCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHH
Confidence            888888888776  55678888888888888888888888776542            2566789999999999999888


Q ss_pred             HHHHHCCCCcccCC
Q psy904          298 ELLCKHGADIDSQD  311 (596)
Q Consensus       298 ~~Ll~~gad~~~~~  311 (596)
                      ..|+..+++....+
T Consensus       306 ~~ll~~~~~~~~~~  319 (364)
T 3ljn_A          306 LQLLQEKLDEVVRS  319 (364)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhc
Confidence            88888776654433

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.9e-38  Score=316.31  Aligned_cols=261  Identities=26%  Similarity=0.262  Sum_probs=156.0

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCCC---ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHH
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGAD---IEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLS   83 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~---i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~   83 (596)
                      .+.+|.||||+||..|++++|++|++.|++   ++..+..|.||||+|+..|+.++|++|+++|+++             
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-------------   71 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-------------   71 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-------------
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------------
Confidence            455555666666666666666666555554   4555555555555555555555555555555544             


Q ss_pred             HHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHH
Q psy904           84 LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVK  163 (596)
Q Consensus        84 ~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~  163 (596)
                                           +..+..|.||||+|+..|+.+++++|+..+++.......    +.+.            
T Consensus        72 ---------------------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~~~------------  114 (282)
T 1oy3_D           72 ---------------------LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD----TYLT------------  114 (282)
T ss_dssp             ---------------------SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------
T ss_pred             ---------------------CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH----HHhh------------
Confidence                                 444444444444444444444444444444433221110    0000            


Q ss_pred             HHHhcCCCcccccccCCCcHHHHHHHcCC-HHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCC
Q psy904          164 LLLDMGSDINAQIETNRNTALTLACFQGR-HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAP  242 (596)
Q Consensus       164 ~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~-~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~  242 (596)
                          .+...   ....+.++++.++..+. ..+...+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus       115 ----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  187 (282)
T 1oy3_D          115 ----QSQDC---TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP  187 (282)
T ss_dssp             ------------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             ----ccccc---CcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence                00000   01122234444433332 23334455567788889999999999999999999999999999999874


Q ss_pred             CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904          243 PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF  322 (596)
Q Consensus       243 ~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~  322 (596)
                      . +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|.
T Consensus       188 ~-~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          188 E-PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             C-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred             C-CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence            2 235999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             HcC
Q psy904          323 RKG  325 (596)
Q Consensus       323 ~~g  325 (596)
                      ...
T Consensus       267 ~~~  269 (282)
T 1oy3_D          267 SDS  269 (282)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.6e-37  Score=299.20  Aligned_cols=228  Identities=29%  Similarity=0.405  Sum_probs=170.3

Q ss_pred             CccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCc
Q psy904          103 NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNT  182 (596)
Q Consensus       103 ~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t  182 (596)
                      +++..+..|.||||+|+..|+.+++++|++.|++++.....  |.||||+|+..|+.+++++|++.|++++.. +..|.|
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t   79 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSED--QRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGST   79 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT--CCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-CTTSCC
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCC--CCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCc
Confidence            34455555666666666666666666666665555544332  566666666666666666666666665544 455667


Q ss_pred             HHHHHHHcCCHHHHHHHHhcC-CCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy904          183 ALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC  261 (596)
Q Consensus       183 ~L~~A~~~~~~~ii~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~  261 (596)
                      |||+|+..++.+++++|++.| .+++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~  157 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI--RDNEENICLHWAAFSGCV  157 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHCCH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc--cCCCCCCHHHHHHHCCCH
Confidence            777777777777777777776 67777778888888888888888888888888888776  456788888888888888


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy904          262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN  335 (596)
Q Consensus       262 ~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  335 (596)
                      +++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.+|+...+..|+.
T Consensus       158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888766555543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=9.5e-38  Score=306.78  Aligned_cols=244  Identities=25%  Similarity=0.305  Sum_probs=141.1

Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccC-CCCCCCcH
Q psy904           36 DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEH-RNVSDYTP  114 (596)
Q Consensus        36 ~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~-~d~~g~t~  114 (596)
                      |+|.+|..|.||||+|+..|+.-                     .....+...++.+++++|+..|++++. .+..|.||
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~---------------------~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~   60 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGL---------------------ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA   60 (253)
T ss_dssp             -----------------------------------------------------------------------CCCTTSCCH
T ss_pred             CCCCCCCCCCcHHHHHHhccccc---------------------cccchhhcCCChHHHHHHHHccCCcccccCCCCCcH
Confidence            45666666666666666665210                     000112333444444444444444422 23444444


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHHHcCCH
Q psy904          115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLACFQGRH  193 (596)
Q Consensus       115 L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~  193 (596)
                      ||+|+..|+.+++++|++.|++++....  .|.||||+|+..|+.+++++|++.+. +++.. +..|.||||+|+..++.
T Consensus        61 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~  137 (253)
T 1yyh_A           61 LHLAARYSRSDAAKRLLEASADANIQDN--MGRTPLHAAVSADAQGVFQILIRNRATDLDAR-MHDGTTPLILAARLAVE  137 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCC-CTTCCCHHHHHHHHTCS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc-CCCCCcHHHHHHHcChH
Confidence            4444444444444444444444443322  24455555555555555555555554 33332 45667777777777888


Q ss_pred             HHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy904          194 EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ  273 (596)
Q Consensus       194 ~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d  273 (596)
                      +++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++
T Consensus       138 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  215 (253)
T 1yyh_A          138 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAKVLLDHFAN  215 (253)
T ss_dssp             SHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            888888888888888888899999999999999999999999998887  567899999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       274 i~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      ++.+|..|.||||+|+..|+.+++.+|.....
T Consensus       216 ~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          216 RDITDHMDRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            99999999999999999999999999987643

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.8e-38  Score=303.72  Aligned_cols=231  Identities=29%  Similarity=0.356  Sum_probs=159.0

Q ss_pred             cCCCChHHHHHHHCCcHHHHHHHHh----CCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHH
Q psy904           75 ERTKDTPLSLACSGGRYEVVELLLT----RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL  150 (596)
Q Consensus        75 ~~~~~t~L~~A~~~g~~eivk~LL~----~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L  150 (596)
                      +..|.||||+|+..|+.++|++|++    .|.+++..+..|.||||+|+..|+.+++++|++.|++++....  .|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~l   83 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR--HGQTAA   83 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC--CCCCHH
Confidence            4556666666666666666666665    5566666666666666666666666666666665555544332  244555


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHH
Q psy904          151 MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR  230 (596)
Q Consensus       151 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~  230 (596)
                      |+|+..|+.+++++|++.+...                              +.+++..+..|.||||+|+..|+.++++
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~------------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~  133 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPG------------------------------TLDLEARNYDGLTALHVAVNTECQETVQ  133 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTT------------------------------SCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCc------------------------------cccccccCcCCCcHHHHHHHcCCHHHHH
Confidence            5555555555555554444310                              1256666777888888888888888888


Q ss_pred             HHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccC
Q psy904          231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQ  310 (596)
Q Consensus       231 ~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~  310 (596)
                      +|++.|++++... ...|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus       134 ~Ll~~g~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  212 (241)
T 1k1a_A          134 LLLERGADIDAVD-IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  212 (241)
T ss_dssp             HHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCCCccccc-ccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCc
Confidence            8888888777631 156788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          311 DNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       311 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      |..|.|||++|+..|+.++++.|++.++
T Consensus       213 ~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          213 NCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            8888888888888888888888877653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.7e-37  Score=297.09  Aligned_cols=225  Identities=26%  Similarity=0.324  Sum_probs=175.7

Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q psy904          111 DYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ  190 (596)
Q Consensus       111 g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~  190 (596)
                      +.+||+.|+..|+++++++|+..+.... ...+..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~   83 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASA   83 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCc-CCCCCCHHHHHHHc
Confidence            3455555555555555555554433221 112233666666666666666666666666666554 55667788888888


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q psy904          191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK  270 (596)
Q Consensus       191 ~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  270 (596)
                      ++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++
T Consensus        84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~  161 (231)
T 3aji_A           84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFY  161 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence            888888888888888888888888999999999999999999998888876  557788999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          271 GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       271 g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      |++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++..++++|+++|++
T Consensus       162 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999988765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.6e-37  Score=298.99  Aligned_cols=234  Identities=29%  Similarity=0.358  Sum_probs=184.9

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHh----CCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCC
Q psy904           37 IEHRDKKGFTPLILAATAGHDKVVDILLN----HKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDY  112 (596)
Q Consensus        37 i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~----~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~  112 (596)
                      ++..|..|.||||+|+..|+.+++++|++    .+.+++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   80 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ   80 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            35678999999999999999999999997    67777654 56799999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCC
Q psy904          113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR  192 (596)
Q Consensus       113 t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~  192 (596)
                      ||||+|+..|+.+++++|++.+.....                               +++. .+..|.||||+|+..++
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~-------------------------------~~~~-~~~~g~t~L~~A~~~~~  128 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTL-------------------------------DLEA-RNYDGLTALHVAVNTEC  128 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSC-------------------------------CTTC-CCTTSCCHHHHHHHHTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccc-------------------------------cccc-cCcCCCcHHHHHHHcCC
Confidence            999999999999999999999863211                               1111 12334455555555566


Q ss_pred             HHHHHHHHhcCCCccccc-CCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC
Q psy904          193 HEVVSLLLDRKANVEHRA-KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG  271 (596)
Q Consensus       193 ~~ii~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g  271 (596)
                      .+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|
T Consensus       129 ~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  206 (241)
T 1k1a_A          129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA--QMYSGSSALHSASGRGLLPLVRTLVRSG  206 (241)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--BCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            666666666666666666 6678888888888888888888888888776  4577889999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          272 AQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       272 ~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      ++++.+|..|.||||+|+..|+.++++.|++.++
T Consensus       207 a~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          207 ADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA  240 (241)
T ss_dssp             CCTTCCCTTSCCTTTTCSSHHHHHHHTC------
T ss_pred             CCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence            9999999999999999999999999999987764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=6e-37  Score=305.42  Aligned_cols=229  Identities=24%  Similarity=0.222  Sum_probs=156.4

Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904            6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA   85 (596)
Q Consensus         6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A   85 (596)
                      ..+..|.||||+||..|++++|++|++.|++++..+..|.||||+|+..|+.+++++|+++++........   +.    
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~---~~----  112 (282)
T 1oy3_D           40 LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASD---TY----  112 (282)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH---HH----
Confidence            45678999999999999999999999999999999999999999999999999999999999875432110   00    


Q ss_pred             HHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy904           86 CSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL  165 (596)
Q Consensus        86 ~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~L  165 (596)
                                  +..+.  ......+.++++.++..+..                                  ..+...+
T Consensus       113 ------------~~~~~--~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~  144 (282)
T 1oy3_D          113 ------------LTQSQ--DCTPDTSHAPAAVDSQPNPE----------------------------------NEEEPRD  144 (282)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             ------------hhccc--ccCcchhcchhhhccccccc----------------------------------hhhhhhh
Confidence                        00000  01111223333333222211                                  1122222


Q ss_pred             HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCC-CChHHHHHHhcCcHHHHHHHHhCCCCCCCCCC
Q psy904          166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT-GLTPLMEAASGGYVEVGRVLLDKGADVNAPPV  244 (596)
Q Consensus       166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~-g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~  244 (596)
                      ...+.+++.. +..|.||||+|+..|+.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++.  .
T Consensus       145 ~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~--~  221 (282)
T 1oy3_D          145 EDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA--R  221 (282)
T ss_dssp             CCGGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--C
T ss_pred             hhhhhcCCCc-CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc--c
Confidence            2333344443 567778888888888888888888888888887754 99999999999999999999999999887  5


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcC
Q psy904          245 PSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGG  292 (596)
Q Consensus       245 ~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g  292 (596)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|....
T Consensus       222 d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          222 MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             CTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC--------------
T ss_pred             ccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCcc
Confidence            678999999999999999999999999999999999999999998754

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.5e-36  Score=292.21  Aligned_cols=230  Identities=28%  Similarity=0.393  Sum_probs=172.2

Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcH
Q psy904           35 ADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTP  114 (596)
Q Consensus        35 ~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~  114 (596)
                      ++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence            456667777777777777777777777777777666543 3456677777777777777777777776666666666666


Q ss_pred             HHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHH
Q psy904          115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE  194 (596)
Q Consensus       115 L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~  194 (596)
                      ||+|+..|+.+++++|++.|.                                  .+++.. +..|.||||+|+..++.+
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~----------------------------------~~~~~~-~~~g~t~L~~A~~~~~~~  125 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQ----------------------------------MDVNCQ-DDGGWTPMIWATEYKHVD  125 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTC----------------------------------CCTTCC-CTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCC----------------------------------CCcccC-CCCCCCHHHHHHHcCCHH
Confidence            666665555555555555541                                  222222 445667777777777777


Q ss_pred             HHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCC
Q psy904          195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQV  274 (596)
Q Consensus       195 ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di  274 (596)
                      ++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..++.+++++|+++|+++
T Consensus       126 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA--VNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            77777777777777888888999999999999999999999988887  5678899999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHhcCcHHHHHHHHH
Q psy904          275 EVKNKKGNSPLWLAANGGHLSVVELLCK  302 (596)
Q Consensus       275 ~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  302 (596)
                      +.+|..|.||||+|+..|+...+..|++
T Consensus       204 ~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          204 TLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999866655543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=293.20  Aligned_cols=230  Identities=23%  Similarity=0.228  Sum_probs=170.1

Q ss_pred             CCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHH
Q psy904          107 RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTL  186 (596)
Q Consensus       107 ~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~  186 (596)
                      .|..+.|+|+.|+..|+.+++++|++.|.+++....  .|.||||+|+..|+.+++++|++.|.+++...+..+.||||+
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~   82 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK--ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW   82 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC--CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence            344455555555555555555555555555444332  255666666666666666666666666555545556677777


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc-HHHHH
Q psy904          187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH-CRFVE  265 (596)
Q Consensus       187 A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~-~~iv~  265 (596)
                      |+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..++ ..+++
T Consensus        83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~--~~~~g~t~l~~a~~~~~~~~~~~  160 (240)
T 3eu9_A           83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYRTHSVDPTR  160 (240)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHCCSSTTHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccc--cCCCCCcHHHHHHHhCChHHHHH
Confidence            7777777777778777777777788888888888888888888888888887776  55678888888886555 78888


Q ss_pred             HHHHCCCCCCCCCC-CCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCC
Q psy904          266 LLLSKGAQVEVKNK-KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF  340 (596)
Q Consensus       266 ~Ll~~g~di~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~  340 (596)
                      +|+..|++++..+. .|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|+++++..
T Consensus       161 ~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            88888888888886 8888888888888888888888888888888888888888888888888888888887754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.9e-36  Score=292.78  Aligned_cols=226  Identities=27%  Similarity=0.381  Sum_probs=165.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCC
Q psy904           44 GFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY  123 (596)
Q Consensus        44 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~  123 (596)
                      +.+|||.|+..|+.+++++|+..+.......+..|.||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            45566666666666666666655554444444555566666666666666666665555555555555555555555554


Q ss_pred             HHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy904          124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK  203 (596)
Q Consensus       124 ~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g  203 (596)
                      .                                   +++++|++.|++++.. +..|.||||+|+..++.+++++|++.|
T Consensus        86 ~-----------------------------------~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g  129 (231)
T 3aji_A           86 D-----------------------------------EIVKALLVKGAHVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGG  129 (231)
T ss_dssp             H-----------------------------------HHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             H-----------------------------------HHHHHHHHcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4                                   4555555544444443 445667777777777777777777777


Q ss_pred             CCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCh
Q psy904          204 ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS  283 (596)
Q Consensus       204 ~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~T  283 (596)
                      ++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus       130 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  207 (231)
T 3aji_A          130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI--QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKT  207 (231)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc--cCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            78888888889999999999999999999999988887  5678999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHCCCCc
Q psy904          284 PLWLAANGGHLSVVELLCKHGADI  307 (596)
Q Consensus       284 pL~~A~~~g~~~iv~~Ll~~gad~  307 (596)
                      |||+|+..++.+++++|+++|+++
T Consensus       208 ~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          208 PLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhHHHHHHHHHccccccC
Confidence            999999999999999999988764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5e-37  Score=307.13  Aligned_cols=238  Identities=21%  Similarity=0.209  Sum_probs=207.8

Q ss_pred             CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904           89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM  168 (596)
Q Consensus        89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~  168 (596)
                      ...+++++|...  +++..|..|.||||+|+..|+.+++++|++.|++++...    |.||||+|+..|+.+++++|+++
T Consensus        11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----g~t~L~~A~~~g~~~~v~~Ll~~   84 (285)
T 3kea_A           11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLEDTKIVKILLFS   84 (285)
T ss_dssp             CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT----TCCHHHHHTTSSSCHHHHHHHHT
T ss_pred             CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC----CCCHHHHHHHcCCHHHHHHHHHC
Confidence            345555666554  467788888899999999999999999999888877663    78999999999999999999999


Q ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC-ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCC
Q psy904          169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG-LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS  247 (596)
Q Consensus       169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~  247 (596)
                      |++++.. +..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+++++|+++|+++..   ...
T Consensus        85 ga~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~---~~~  160 (285)
T 3kea_A           85 GLDDSQF-DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD---LAI  160 (285)
T ss_dssp             TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC---CST
T ss_pred             CCCCCCc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc---ccC
Confidence            9988875 6688899999999999999999999999999999999 7999999999999999999999987632   127


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChH-HHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCC
Q psy904          248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP-LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH  326 (596)
Q Consensus       248 g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  326 (596)
                      |.||||+|+..|+.+++++|+++|++++..|..|.|| ||+|+..|+.+++++|+++|++++..+.       .|+..|+
T Consensus       161 g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~  233 (285)
T 3kea_A          161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDD  233 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTC
T ss_pred             CccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCC
Confidence            8999999999999999999999999999999999998 9999999999999999999999998883       5677899


Q ss_pred             HHHHHHHHhCcCCCCCc
Q psy904          327 VKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       327 ~~iv~~Ll~~~~~~~~~  343 (596)
                      .++|++|+++|+++...
T Consensus       234 ~~iv~~Ll~~g~~~~~~  250 (285)
T 3kea_A          234 AEIAKMIIEKHVEYKSD  250 (285)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCc
Confidence            99999999999865543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.9e-37  Score=305.77  Aligned_cols=232  Identities=27%  Similarity=0.339  Sum_probs=148.6

Q ss_pred             CCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHc
Q psy904           77 TKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN  156 (596)
Q Consensus        77 ~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~  156 (596)
                      .+.++|+.||..|++++|++||+.|.+.......                           .....+..+.|||+.|+..
T Consensus        10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~---------------------------~~~~~~~~~~t~L~~a~~~   62 (269)
T 4b93_B           10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAED---------------------------TVSAADPEFCHPLCQCPKC   62 (269)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------------
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCcccccccc---------------------------cccccCccCCCHHHHHHHh
Confidence            3456777777777777777777666542110000                           0111122366777777766


Q ss_pred             CCH-HHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhC
Q psy904          157 GHT-AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK  235 (596)
Q Consensus       157 g~~-eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  235 (596)
                      ++. .++.+|+..|++++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.
T Consensus        63 ~~~~~~v~~Ll~~Gadvn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  141 (269)
T 4b93_B           63 APAQKRLAKVPASGLGVNVT-SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS  141 (269)
T ss_dssp             ------------CCCCTTCC-CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC
Confidence            654 3677777777777765 56777888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCC
Q psy904          236 GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV  315 (596)
Q Consensus       236 g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~  315 (596)
                      |++++.  .+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.++|++|+++|+|++.+|..|.
T Consensus       142 g~~~n~--~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~  219 (269)
T 4b93_B          142 NAKPNK--KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQR  219 (269)
T ss_dssp             TCCSCC--CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             CCCCCC--CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            888776  456788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHcCC-HHHHHHHHhCcC
Q psy904          316 SCLMAAFRKGH-VKAVRWMVNHVA  338 (596)
Q Consensus       316 t~L~~A~~~g~-~~iv~~Ll~~~~  338 (596)
                      |||++|+.+++ .+++++|...++
T Consensus       220 TpL~~A~~~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          220 TAVDCAEQNSKIMELLQVVPSCVA  243 (269)
T ss_dssp             CSGGGSCTTCHHHHHTTC------
T ss_pred             CHHHHHHhCCcHHHHHHHHHHhch
Confidence            88888877765 344444444444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1e-35  Score=288.77  Aligned_cols=231  Identities=26%  Similarity=0.310  Sum_probs=201.9

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC   86 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~   86 (596)
                      .|..|.|+|+.|+..|++++|++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999998877777999999999


Q ss_pred             HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC-HHHHHHH
Q psy904           87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH-TAAVKLL  165 (596)
Q Consensus        87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~-~eiv~~L  165 (596)
                      ..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.....  |.||||+|+..++ .+++++|
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~~L  162 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN--GMTPLMWAAYRTHSVDPTRLL  162 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHHCCSSTTHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC--CCcHHHHHHHhCChHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888766543  8899999886665 7888888


Q ss_pred             HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCC
Q psy904          166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV  239 (596)
Q Consensus       166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~  239 (596)
                      +..|++++......|.||||+|+..++.+++++|++.|++++..+..|.|||++|+..|+.+++++|++.+...
T Consensus       163 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          163 LTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            88888887765457778888888888888888888888888888888888888888888888888888776554

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-36  Score=305.24  Aligned_cols=274  Identities=22%  Similarity=0.296  Sum_probs=174.0

Q ss_pred             HHHhcCcHHHHHHHHHCCCCcccc---------CCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904           17 LACAGGHEELVELLLSRGADIEHR---------DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus        17 ~A~~~g~~~ivk~Ll~~g~~i~~~---------d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      .++..|+.+.+..++..+.++...         +..|.||||+||..|+.++|++|+++|++++.. +..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCB-CTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCHHHHHHH
Confidence            456667777777777665443321         223446666666666666666666666665443 3456666666666


Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD  167 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~  167 (596)
                      .|+.++|++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++....  .|.||||+|+..|+.+++.+++.
T Consensus        83 ~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~--~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           83 DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS--EGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCC--CCCCHHHHHHhcchHHHHHHHHh
Confidence            6666666666666666666666666666666666666666666666655554432  25566666655555555555543


Q ss_pred             cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCC
Q psy904          168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS  247 (596)
Q Consensus       168 ~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~  247 (596)
                      .                                 .+.+++..+..+.++++.        .+..++..+...+. ..+..
T Consensus       161 ~---------------------------------~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~-~~~~~  198 (299)
T 1s70_B          161 R---------------------------------QGVDIEAARKEEERIMLR--------DARQWLNSGHINDV-RHAKS  198 (299)
T ss_dssp             H---------------------------------HTCCHHHHHHHHHHHHHH--------HHHHHHHHTCCCCC-CCTTT
T ss_pred             h---------------------------------cCCCchhhhhhhhhHHHH--------HHHHHHhccCcchh-hhcCC
Confidence            2                                 122222211111122221        22333444333322 24567


Q ss_pred             CCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCH
Q psy904          248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV  327 (596)
Q Consensus       248 g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~  327 (596)
                      |.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|... ..
T Consensus       199 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~  277 (299)
T 1s70_B          199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-IL  277 (299)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GG
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999998653 44


Q ss_pred             HHHHHHHhC
Q psy904          328 KAVRWMVNH  336 (596)
Q Consensus       328 ~iv~~Ll~~  336 (596)
                      .++..|+..
T Consensus       278 ~~l~~l~~~  286 (299)
T 1s70_B          278 GYLEELQKK  286 (299)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-35  Score=286.72  Aligned_cols=219  Identities=26%  Similarity=0.336  Sum_probs=155.7

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CCcccccccCCCcHHHHHHH
Q psy904          112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG--SDINAQIETNRNTALTLACF  189 (596)
Q Consensus       112 ~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~--~~~~~~~~~~~~t~L~~A~~  189 (596)
                      .||||+|+..|+.+++++|++.++++... .+..|.||||+|+..|+.+++++|++.|  .+++...+..|.||||+|+.
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCcccccc-CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            34444444444444444444443332221 1122455555555555555555555555  33333234556677777777


Q ss_pred             cCCHHHHHHHHhcC--CCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHH
Q psy904          190 QGRHEVVSLLLDRK--ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL  267 (596)
Q Consensus       190 ~~~~~ii~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  267 (596)
                      .++.+++++|++.|  ++++..+..|.||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+..|+.+++++|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCCHHHHHHH
Confidence            77777777777776  67777778888888888888888888888888888876  456788899999988899999999


Q ss_pred             HHCC-CCCCCCCCCCChHHHHHHhcCcHHHHHHHH-HCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          268 LSKG-AQVEVKNKKGNSPLWLAANGGHLSVVELLC-KHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       268 l~~g-~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      +++| ++++..|..|.||||+|+..|+.+++++|+ ++|++++.+|..|.|||++|+..   +++++|+++
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            9888 888888889999999999999999999998 78999999998999999988654   466677654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=301.41  Aligned_cols=232  Identities=29%  Similarity=0.400  Sum_probs=154.6

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc-------cccCCCChHHHHHHHCCcH-HHHHHHHhCCCCccCCCCC
Q psy904           39 HRDKKGFTPLILAATAGHDKVVDILLNHKADMEA-------QSERTKDTPLSLACSGGRY-EVVELLLTRGANKEHRNVS  110 (596)
Q Consensus        39 ~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~-------~~~~~~~t~L~~A~~~g~~-eivk~LL~~g~~~~~~d~~  110 (596)
                      ..|..+.++|+.||..|+.++|++|++.+.+...       ..+..+.|||++|+..++. .++.+|+..|++++..|..
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~   85 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD   85 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence            4566788999999999999999999999876432       1122344455555444333 2444444444444444444


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q psy904          111 DYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ  190 (596)
Q Consensus       111 g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~  190 (596)
                                                         |.||||+|+..|+.+++++|+..|++++.. +..|.||++.|+..
T Consensus        86 -----------------------------------G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~-~~~g~t~l~~a~~~  129 (269)
T 4b93_B           86 -----------------------------------GSSPLHVAALHGRADLIPLLLKHGANAGAR-NADQAVPLHLACQQ  129 (269)
T ss_dssp             -----------------------------------SCCHHHHHHHTTCTTHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             -----------------------------------CCCHHHHHHHcCcHHHHHHHHhcCCCcCcc-CCCCCCcccccccc
Confidence                                               555555555555555555555555555544 45566777888888


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q psy904          191 GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK  270 (596)
Q Consensus       191 ~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  270 (596)
                      ++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.++|++|+++
T Consensus       130 ~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~--~~~~g~t~Lh~A~~~g~~~~v~~Ll~~  207 (269)
T 4b93_B          130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA--SNNKGNTALHEAVIEKHVFVVELLLLH  207 (269)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             ChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc--cccCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            888888888888888888899999999999999999999999999999887  567899999999999999999999999


Q ss_pred             CCCCCCCCCCCChHHHHHHhcCc-HHHHHHHHHCCCCcc
Q psy904          271 GAQVEVKNKKGNSPLWLAANGGH-LSVVELLCKHGADID  308 (596)
Q Consensus       271 g~di~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~gad~~  308 (596)
                      |+|++.+|..|.||||+|+.+++ .+++++|...++.++
T Consensus       208 Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          208 GASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             TCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             CCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            99999999999999999998886 456666666665443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.3e-35  Score=285.30  Aligned_cols=217  Identities=28%  Similarity=0.321  Sum_probs=158.3

Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHh
Q psy904          122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD  201 (596)
Q Consensus       122 g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~  201 (596)
                      |+++++++|++.|++++... +..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQ-DNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCccccc-CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34444445555544443321 122555555555555555555555555555543 4555666666666666666666666


Q ss_pred             cCC-CcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCC
Q psy904          202 RKA-NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK  280 (596)
Q Consensus       202 ~g~-~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~  280 (596)
                      .+. +++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            655 6666777788888888888888888888888887776  4567888888888888888888888888888888888


Q ss_pred             CChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCC
Q psy904          281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPS  342 (596)
Q Consensus       281 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~  342 (596)
                      |.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++|+...+
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~  219 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP  219 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCccc
Confidence            88888888888888888888888888888888888888888888888888888888886544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.5e-36  Score=302.03  Aligned_cols=241  Identities=18%  Similarity=0.175  Sum_probs=165.9

Q ss_pred             CcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCC
Q psy904           22 GHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG  101 (596)
Q Consensus        22 g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g  101 (596)
                      +..+++++|...  +++..|..|.||||+|+..|+.++|++|+++|++++..   .|.||||+|+..|+.++|++|+++|
T Consensus        11 ~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~g   85 (285)
T 3kea_A           11 KSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSG   85 (285)
T ss_dssp             CHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred             CHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            345555555554  57788888999999999999999999999998887665   4788999998888888888888888


Q ss_pred             CCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC
Q psy904          102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLG-ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNR  180 (596)
Q Consensus       102 ~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g-~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~  180 (596)
                      ++++..+..|.||||+|+..|+.+++++|+++|++++.....  | .||||+|+..|+.+++++|+++|++....     
T Consensus        86 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~--g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-----  158 (285)
T 3kea_A           86 LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKT--GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-----  158 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSS--GGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-----
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCC--CCCCHHHHHHHcCCHHHHHHHHhCCCccccc-----
Confidence            888888888888888888888888888887777766654432  4 56666666666666666666665543211     


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcH-HHHHHHcC
Q psy904          181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA-LTIAADKG  259 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~-L~~A~~~~  259 (596)
                                                    ..|.||||+|+..|+.+++++|+++|++++.  .+..|.|| ||+|+..|
T Consensus       159 ------------------------------~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~--~~~~g~t~~L~~A~~~~  206 (285)
T 3kea_A          159 ------------------------------AILLSCIHITIKNGHVDMMILLLDYMTSTNT--NNSLLFIPDIKLAIDNK  206 (285)
T ss_dssp             ------------------------------STHHHHHHHHHHTTCHHHHHHHHHHHHHTCT--TCCCBCCTTHHHHHHHT
T ss_pred             ------------------------------cCCccHHHHHHHcChHHHHHHHHHcCCCCCc--ccCCCCChHHHHHHHcC
Confidence                                          1445555555555555555555555555554  34455565 66666666


Q ss_pred             cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCC
Q psy904          260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNR  313 (596)
Q Consensus       260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~  313 (596)
                      +.+++++|+++|++++..|       +.|+..|+.+++++|+++|++++..+..
T Consensus       207 ~~~~v~~Ll~~gad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~~~~~~  253 (285)
T 3kea_A          207 DIEMLQALFKYDINIYSAN-------LENVLLDDAEIAKMIIEKHVEYKSDSYT  253 (285)
T ss_dssp             CHHHHHHHTTSCBCSTTTT-------GGGGTTTCHHHHHHHHHHHHHHTTCTTT
T ss_pred             CHHHHHHHHHcCCCCCCCC-------hhhhhcCCHHHHHHHHHcCCCCCCcccc
Confidence            6666666666666666655       2455667777777777777766654433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.3e-35  Score=283.42  Aligned_cols=219  Identities=26%  Similarity=0.292  Sum_probs=158.2

Q ss_pred             ChHHHHHHHCCcHHHHHHHHhCCCCccC-CCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccC-CCCCCCcHHHHHHHc
Q psy904           79 DTPLSLACSGGRYEVVELLLTRGANKEH-RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRT-GSKLGISPLMLAAMN  156 (596)
Q Consensus        79 ~t~L~~A~~~g~~eivk~LL~~g~~~~~-~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~  156 (596)
                      .||||+|+..|+.++|++|++.+.++.. .+..|.||||+|+..|+.+++++|++.|++++... .+..|.||||+|+..
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~   82 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   82 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc
Confidence            3455555555555555555544443322 44455555555555555555555555553333322 333466666666666


Q ss_pred             CCHHHHHHHHhcC--CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHh
Q psy904          157 GHTAAVKLLLDMG--SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD  234 (596)
Q Consensus       157 g~~eiv~~Ll~~~--~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  234 (596)
                      |+.+++++|++.|  ++++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~~~Ll~~g~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           83 GNLEVVKSLYDRPLKPDLNKI-TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             CCHHHHHHHHSSSSCCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHHhCCCCcccccC-CcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            6666666666666  454443 5567788888888888888888888888888889999999999999999999999999


Q ss_pred             CC-CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHH-HCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904          235 KG-ADVNAPPVPSSRDTALTIAADKGHCRFVELLL-SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH  303 (596)
Q Consensus       235 ~g-~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll-~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  303 (596)
                      .| ++++.  .+..|.||||+|+..|+.+++++|+ ++|++++.+|..|.||||+|+..   +++++|+++
T Consensus       162 ~g~~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          162 LGKSAVNW--QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             TTCCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             cCcccccC--cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            99 88877  5688999999999999999999999 89999999999999999999765   566666653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-35  Score=298.52  Aligned_cols=250  Identities=27%  Similarity=0.336  Sum_probs=206.3

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHH
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLAC   86 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~   86 (596)
                      .+..|.|+||+||..|++++|++|++.|++++..|..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~tpL~~A~  114 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAA  114 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999998765 567999999999


Q ss_pred             HCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhC-CCCccccCCCCCCCcHHHHHHHcCCHHHHHHH
Q psy904           87 SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH-GAEINSRTGSKLGISPLMLAAMNGHTAAVKLL  165 (596)
Q Consensus        87 ~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~-g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~L  165 (596)
                      ..|+.++|++|+++|++++..+..|.||||+|+..++.+++.+++.. +.+++..             ...         
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~-------------~~~---------  172 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAA-------------RKE---------  172 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHH-------------HHH---------
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhh-------------hhh---------
Confidence            99999999999999999999999999999999999999999998864 2222110             000         


Q ss_pred             HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCC
Q psy904          166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP  245 (596)
Q Consensus       166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~  245 (596)
                                    +.++++.       .+..++..........+..|.||||+|+..|+.+++++|++.|++++.  .+
T Consensus       173 --------------~~~~~~~-------~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~--~d  229 (299)
T 1s70_B          173 --------------EERIMLR-------DARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI--KD  229 (299)
T ss_dssp             --------------HHHHHHH-------HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--CC
T ss_pred             --------------hhhHHHH-------HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC--cC
Confidence                          0011111       112233333344445567889999999999999999999999999887  56


Q ss_pred             CCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904          246 SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH  303 (596)
Q Consensus       246 ~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  303 (596)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ...++..|+..
T Consensus       230 ~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999764 45555555543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.5e-35  Score=280.98  Aligned_cols=216  Identities=23%  Similarity=0.276  Sum_probs=157.5

Q ss_pred             CCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCC
Q psy904           55 GHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG  134 (596)
Q Consensus        55 g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g  134 (596)
                      |+.+++++|+++|++++...+..|.||||+|+..|+.++|++|++.|++++..+..|.                      
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~----------------------   59 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR----------------------   59 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC----------------------
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC----------------------
Confidence            4455555555555555544444555555555555555555555555555555554444                      


Q ss_pred             CCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC
Q psy904          135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG  213 (596)
Q Consensus       135 ~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g  213 (596)
                                   ||||+|+..|+.+++++|++.+. +++. .+..+.||||+|+..++.+++++|++.|++++..+..|
T Consensus        60 -------------t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  125 (223)
T 2f8y_A           60 -------------TPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG  125 (223)
T ss_dssp             -------------CHHHHHHHTTCHHHHHHHHHBTTSCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred             -------------CHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCC
Confidence                         45555555555555555555444 2222 24556677777777778888888888888888888889


Q ss_pred             ChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCc
Q psy904          214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGH  293 (596)
Q Consensus       214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~  293 (596)
                      .||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          126 KSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence            9999999999999999999999988887  55788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCcc
Q psy904          294 LSVVELLCKHGADID  308 (596)
Q Consensus       294 ~~iv~~Ll~~gad~~  308 (596)
                      .+++++|+++|+...
T Consensus       204 ~~i~~~L~~~g~~~~  218 (223)
T 2f8y_A          204 HDIVRLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHHHHHTTCSSC
T ss_pred             hHHHHHHHHcCCCcc
Confidence            999999999998654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-36  Score=308.16  Aligned_cols=274  Identities=15%  Similarity=0.088  Sum_probs=155.3

Q ss_pred             HHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHH
Q psy904           17 LACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVEL   96 (596)
Q Consensus        17 ~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~   96 (596)
                      .++.....++|++|++.|++++..+..|.|+++     |+.++|++|+++|.++..       +++++|+.....     
T Consensus        25 ~~~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~-------~~~~~a~~~~~~-----   87 (327)
T 1sw6_A           25 GPIITFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI-------QEMPTSLNNDSS-----   87 (327)
T ss_dssp             CCEEECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------------------
T ss_pred             cchhhhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc-------ccchHhhhcccc-----
Confidence            333456678899999999999999999999987     999999999999877433       334333322100     


Q ss_pred             HHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccc-cCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc
Q psy904           97 LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS-RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ  175 (596)
Q Consensus        97 LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~  175 (596)
                           ...........+.+|.|+..+..+++++|+..|++++. ...  .|.||||+|+..|+.++|++|+++|++++..
T Consensus        88 -----~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~--~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~  160 (327)
T 1sw6_A           88 -----NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE--HGNTPLHWLTSIANLELVKHLVKHGSNRLYG  160 (327)
T ss_dssp             ---------------------CHHHHHHHHHHHCTTSCCCSCSCCST--TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBC
T ss_pred             -----cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCC--CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence                 00000000111223444444444444444444444444 221  2445555555555555555555555544433


Q ss_pred             cccCCCcHHHHHHHcCC---HHHHHHHHhcC-CCcccccCCCChHHHHHHh----cCcHHHHHHHHhC------------
Q psy904          176 IETNRNTALTLACFQGR---HEVVSLLLDRK-ANVEHRAKTGLTPLMEAAS----GGYVEVGRVLLDK------------  235 (596)
Q Consensus       176 ~~~~~~t~L~~A~~~~~---~~ii~~Ll~~g-~~~~~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~------------  235 (596)
                       +..|.||||+|+..|+   .+++..|++.+ .+++..+..|.||||+|+.    .|+.+++++|++.            
T Consensus       161 -d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~  239 (327)
T 1sw6_A          161 -DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP  239 (327)
T ss_dssp             -CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             -CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchH
Confidence             3444455555555444   34444444443 3455555555555555555    5555555555544            


Q ss_pred             --------CCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904          236 --------GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI  307 (596)
Q Consensus       236 --------g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  307 (596)
                              |++++.  .+..|.||||.|+.      +++|+++  +++.+|..|.||||+|+..|+.++|++|+++|+++
T Consensus       240 i~~~~~~~g~~~~~--~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~  309 (327)
T 1sw6_A          240 IQSGTNEKESKPND--KNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP  309 (327)
T ss_dssp             EEEC------------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             HHhhhhcccCCccc--ccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence                    666666  55788899998885      8888888  57888888999999999999999999999999999


Q ss_pred             ccCCCCCCCHHHHHHHcC
Q psy904          308 DSQDNRKVSCLMAAFRKG  325 (596)
Q Consensus       308 ~~~~~~g~t~L~~A~~~g  325 (596)
                      +.+|..|.||||+|+.+|
T Consensus       310 ~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          310 FIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TCCCTTSCCGGGGTCC--
T ss_pred             cccCCCCCCHHHHHHhcC
Confidence            999999999999887654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1e-35  Score=303.71  Aligned_cols=256  Identities=14%  Similarity=0.067  Sum_probs=183.5

Q ss_pred             cCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhC
Q psy904           54 AGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH  133 (596)
Q Consensus        54 ~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~  133 (596)
                      ....++|++|+++|++++.. +..|.|+++     |++++|++||++|++++.      +++++|+.....         
T Consensus        29 ~~~~dlv~~ll~~ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~------~~~~~a~~~~~~---------   87 (327)
T 1sw6_A           29 TFTHDLTSDFLSSPLKIMKA-LPSPVVNDN-----EQKMKLEAFLQRLLFPEI------QEMPTSLNNDSS---------   87 (327)
T ss_dssp             ECCTTCCCSTTTSSCCCEEC-BCCCCCCCH-----HHHHHHHHHHHHHHC------------------------------
T ss_pred             hhcCchHHHHhhCCcccccC-CCCCCcccC-----chhHHHHHHHHhccCCcc------ccchHhhhcccc---------
Confidence            34556677777777776654 345666665     677777777777665322      344444332100         


Q ss_pred             CCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCC
Q psy904          134 GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG  213 (596)
Q Consensus       134 g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g  213 (596)
                       .  ..........+.+|+++..+..+++++|+..|++++.+.+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus        88 -~--~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g  164 (327)
T 1sw6_A           88 -N--RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG  164 (327)
T ss_dssp             -------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTC
T ss_pred             -c--ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence             0  0000111123456888888889999999999999998558899999999999999999999999999999999999


Q ss_pred             ChHHHHHHhcCc---HHHHHHHHhCC-CCCCCCCCCCCCCcHHHHHHH----cCcHHHHHHHHHC---------------
Q psy904          214 LTPLMEAASGGY---VEVGRVLLDKG-ADVNAPPVPSSRDTALTIAAD----KGHCRFVELLLSK---------------  270 (596)
Q Consensus       214 ~t~L~~A~~~g~---~~iv~~Ll~~g-~~~~~~~~~~~g~t~L~~A~~----~~~~~iv~~Ll~~---------------  270 (596)
                      .||||+|+..|+   .+++..|++.+ ++++.  .+..|.||||+|+.    .|+.+++++|++.               
T Consensus       165 ~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~--~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~  242 (327)
T 1sw6_A          165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL--EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS  242 (327)
T ss_dssp             CCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE--ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEE
T ss_pred             CCHHHHHHHhcccccHHHHHHHHHhhhccccC--CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHh
Confidence            999999999998   67777777765 55665  66899999999999    8999999999987               


Q ss_pred             -----CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904          271 -----GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       271 -----g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  343 (596)
                           |++++..+..|.||||+|+.      +++|+++  +++.+|..|.||||+|+..|+.++|++|+++|+++...
T Consensus       243 ~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          243 GTNEKESKPNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             C----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             hhhcccCCcccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence                 89999999999999999996      8999998  68889999999999999999999999999999987654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.8e-32  Score=254.93  Aligned_cols=190  Identities=27%  Similarity=0.349  Sum_probs=174.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhc
Q psy904          145 LGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG  223 (596)
Q Consensus       145 ~g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~  223 (596)
                      ++.|||+.|+..|+.+++++|+..+. +++.. +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            47789999999999999999998876 66654 67888999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHH-hCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCC-CCCCCCCCCCChHHHHHHhcCc-----HHH
Q psy904          224 GYVEVGRVLL-DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKG-AQVEVKNKKGNSPLWLAANGGH-----LSV  296 (596)
Q Consensus       224 g~~~iv~~Ll-~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g-~di~~~d~~g~TpL~~A~~~g~-----~~i  296 (596)
                      |+.+++++|+ ..+++++.  .+..|.||||+|+..|+.+++++|+++| ++++..|..|.||||+|+..++     .++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNK--HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTC--CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             CCHHHHHHHHhccCccccc--ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence            9999999999 56667776  5678999999999999999999999999 9999999999999999999988     999


Q ss_pred             HHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904          297 VELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV  337 (596)
Q Consensus       297 v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  337 (596)
                      +++|+++|++++.+|..|.|||++|+..|+.+++++|+++|
T Consensus       161 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999999999999886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=7.8e-34  Score=275.64  Aligned_cols=217  Identities=25%  Similarity=0.228  Sum_probs=153.8

Q ss_pred             cCCCChHHHHHHHCCcHHHHHHHHhCCC----CccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHH
Q psy904           75 ERTKDTPLSLACSGGRYEVVELLLTRGA----NKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL  150 (596)
Q Consensus        75 ~~~~~t~L~~A~~~g~~eivk~LL~~g~----~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L  150 (596)
                      +..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++.|++++....  .|.|||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--~g~t~L   82 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF--RGNTPL   82 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT--TCCCHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--CCCCHH
Confidence            4556677777777777777777766544    4566666666666666666666666666666666555432  256666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHH
Q psy904          151 MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR  230 (596)
Q Consensus       151 ~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~  230 (596)
                      |+|+..|+.+++++|+..+.++...                            ..++..+..|.||||+|+..|+.++++
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~  134 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLH----------------------------SILKATNYNGHTCLHLASIHGYLGIVE  134 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS----------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHH----------------------------HHhhccCCCCCCHHHHHHHcCCHHHHH
Confidence            6666666666666666655432211                            113556677888888888888888888


Q ss_pred             HHHhCCCCCCCCCCCC-CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcc-
Q psy904          231 VLLDKGADVNAPPVPS-SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADID-  308 (596)
Q Consensus       231 ~Ll~~g~~~~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~-  308 (596)
                      +|++.|++++.  .+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++. 
T Consensus       135 ~Ll~~g~~~~~--~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~  212 (236)
T 1ikn_D          135 LLVSLGADVNA--QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ  212 (236)
T ss_dssp             HHHHHTCCTTC--CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred             HHHHcCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh
Confidence            88888888876  344 78899999999999999999999999999999899999999999999999999999998765 


Q ss_pred             -cCCCCCCCHHHHHHH
Q psy904          309 -SQDNRKVSCLMAAFR  323 (596)
Q Consensus       309 -~~~~~g~t~L~~A~~  323 (596)
                       ..+..|.||++.+..
T Consensus       213 ~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          213 MLPESEDEESYDTESE  228 (236)
T ss_dssp             SCCCCCTTTCCCCC--
T ss_pred             cCCccchHHHHhhhcc
Confidence             777778887665543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.8e-32  Score=247.81  Aligned_cols=158  Identities=37%  Similarity=0.501  Sum_probs=143.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy904          182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC  261 (596)
Q Consensus       182 t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~  261 (596)
                      +.|+.||..|+.++|++|++.|++++.++..|.||||+|+..++.+++.+|++.|++++.  .+..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~--~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA--KDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh--hccCCCCHHHHHHHcCCH
Confidence            578899999999999999999999999999999999999999999999999999999887  567899999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904          262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       262 ~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  341 (596)
                      ++|++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.|||++|+..|+.+++++|+++|+++.
T Consensus        84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A           84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.98  E-value=2.2e-32  Score=268.86  Aligned_cols=194  Identities=18%  Similarity=0.214  Sum_probs=152.7

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHhcCCCccc---ccccCCCcHHHHHHHc---CCHHHHHHHHhcCCCccc-------
Q psy904          146 GISPLMLAAMNGHTA----AVKLLLDMGSDINA---QIETNRNTALTLACFQ---GRHEVVSLLLDRKANVEH-------  208 (596)
Q Consensus       146 g~t~L~~A~~~g~~e----iv~~Ll~~~~~~~~---~~~~~~~t~L~~A~~~---~~~~ii~~Ll~~g~~~~~-------  208 (596)
                      |.||||.|+..|+.+    ++++|+..|.+++.   ..+..|.||||+|+..   |+.+++++|++.|++++.       
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            455666666666654    44455555555554   2245556666666666   666666666665555442       


Q ss_pred             ----ccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCC-----------CCCCcHHHHHHHcCcHHHHHHHHH---C
Q psy904          209 ----RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP-----------SSRDTALTIAADKGHCRFVELLLS---K  270 (596)
Q Consensus       209 ----~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~-----------~~g~t~L~~A~~~~~~~iv~~Ll~---~  270 (596)
                          .+..|.||||+|+..|+.+++++|+++|++++.....           ..|.||||+|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                2366888888888888888888888888888764321           139999999999999999999999   9


Q ss_pred             CCCCCCCCCCCChHHHHHHh--cCcHH-------HHHHHHHCCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy904          271 GAQVEVKNKKGNSPLWLAAN--GGHLS-------VVELLCKHGADI-------DSQDNRKVSCLMAAFRKGHVKAVRWMV  334 (596)
Q Consensus       271 g~di~~~d~~g~TpL~~A~~--~g~~~-------iv~~Ll~~gad~-------~~~~~~g~t~L~~A~~~g~~~iv~~Ll  334 (596)
                      |++++.+|..|.||||+|+.  .++.+       ++++|+++|+++       +.+|..|.||||+|+..|+.+++++|+
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999998  88888       999999999999       999999999999999999999999999


Q ss_pred             hCcCC
Q psy904          335 NHVAQ  339 (596)
Q Consensus       335 ~~~~~  339 (596)
                      ++|+.
T Consensus       242 ~~g~~  246 (256)
T 2etb_A          242 QREFS  246 (256)
T ss_dssp             HHHHH
T ss_pred             hCCCC
Confidence            99874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=8.4e-33  Score=268.36  Aligned_cols=213  Identities=22%  Similarity=0.233  Sum_probs=106.0

Q ss_pred             cCCCCCcHHHHHHhcCcHHHHHHHHHCCC----CccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHH
Q psy904            7 TESNHDTALTLACAGGHEELVELLLSRGA----DIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPL   82 (596)
Q Consensus         7 ~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~----~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L   82 (596)
                      .+.+|.||||+||..|+.++|++|++.+.    +++..+..|.||||+|+..|+.++|++|+++|+++            
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------   71 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP------------   71 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS------------
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC------------
Confidence            34556666666666666666666655433    45555555555555555555555555555555544            


Q ss_pred             HHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccc----cCCCCCCCcHHHHHHHcCC
Q psy904           83 SLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS----RTGSKLGISPLMLAAMNGH  158 (596)
Q Consensus        83 ~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~----~~~~~~g~t~L~~A~~~g~  158 (596)
                                            +..+..|.||||+|+..|+.+++++|+..+.+...    ...+..|.||||+|+..|+
T Consensus        72 ----------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  129 (236)
T 1ikn_D           72 ----------------------ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY  129 (236)
T ss_dssp             ----------------------CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC
T ss_pred             ----------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCC
Confidence                                  44444444555555555555555555544433211    1111224444444444444


Q ss_pred             HHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccC-CCChHHHHHHhcCcHHHHHHHHhCCC
Q psy904          159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAK-TGLTPLMEAASGGYVEVGRVLLDKGA  237 (596)
Q Consensus       159 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~  237 (596)
                      .+                                  ++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus       130 ~~----------------------------------~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga  175 (236)
T 1ikn_D          130 LG----------------------------------IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA  175 (236)
T ss_dssp             HH----------------------------------HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HH----------------------------------HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            44                                  44444444444444443 45555555555555555555555555


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCChHHHHHH
Q psy904          238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVE--VKNKKGNSPLWLAA  289 (596)
Q Consensus       238 ~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~--~~d~~g~TpL~~A~  289 (596)
                      +++.  .+..|.||||+|+..|+.+++++|+++|+++.  .++..|.||++.+.
T Consensus       176 ~~~~--~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  227 (236)
T 1ikn_D          176 DVNR--VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES  227 (236)
T ss_dssp             CSCC--CCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred             CCCc--ccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence            5544  33455555555555555555555555555443  45555555554443

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.3e-30  Score=246.17  Aligned_cols=188  Identities=25%  Similarity=0.356  Sum_probs=129.7

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCC-CccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHc
Q psy904          112 YTPLSLAASGGYVNIIKLLLTHGA-EINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ  190 (596)
Q Consensus       112 ~t~L~~A~~~g~~eiv~~Ll~~g~-~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~  190 (596)
                      .|||+.|+..|+.++++.|+..+. +++....  .|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~--~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~~   82 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDT--EGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDSPYLYAGAQ   82 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT--TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHT
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCCHHHHHHHc
Confidence            344444444444444444443332 2222221  2444555555555555555555555544443 34455666666666


Q ss_pred             CCHHHHHHHH-hcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCC-CCCCCCCCCCCCCcHHHHHHHcCc-----HHH
Q psy904          191 GRHEVVSLLL-DRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKG-ADVNAPPVPSSRDTALTIAADKGH-----CRF  263 (596)
Q Consensus       191 ~~~~ii~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~~~~~g~t~L~~A~~~~~-----~~i  263 (596)
                      ++.+++++|+ ..+.+++..+..|.||||+|+..|+.+++++|++.| ++++.  .+..|.||||+|+..++     .++
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF--QNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTC--CCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCC--CCCCCCCHHHHHHHhccchhhHHHH
Confidence            6666666666 445577777778888888888888888888888887 77776  55788899999998887     899


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       264 v~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      +++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       161 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999999999999999999999999999999999886

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=7e-31  Score=240.57  Aligned_cols=159  Identities=42%  Similarity=0.582  Sum_probs=147.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHH
Q psy904          148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE  227 (596)
Q Consensus       148 t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  227 (596)
                      ++|+.||..|+.++|++|++.|++++.. +..|.||||+|+..++.+++.+|++.|++++..+..|.||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            5799999999999999999999999886 778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904          228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI  307 (596)
Q Consensus       228 iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  307 (596)
                      ++++|++.|++++.  .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++||++
T Consensus        85 ~v~~Ll~~gadvn~--~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           85 VVKLLISKGADVNA--KDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             HHHHHHHCcCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            99999999999988  5678999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cc
Q psy904          308 DS  309 (596)
Q Consensus       308 ~~  309 (596)
                      +.
T Consensus       163 e~  164 (169)
T 4gpm_A          163 EH  164 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            74

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=7.6e-32  Score=267.71  Aligned_cols=133  Identities=20%  Similarity=0.262  Sum_probs=99.6

Q ss_pred             cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCC------------CCCCCCcHHHHHHHcCcHHHHHHHHH---CCCCC
Q psy904          210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP------------VPSSRDTALTIAADKGHCRFVELLLS---KGAQV  274 (596)
Q Consensus       210 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~------------~~~~g~t~L~~A~~~~~~~iv~~Ll~---~g~di  274 (596)
                      +..|.||||+|+..|+.+++++|+++|++++...            .+..|.||||+|+..|+.+++++|++   +|+++
T Consensus        98 d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~  177 (273)
T 2pnn_A           98 YYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI  177 (273)
T ss_dssp             TTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc
Confidence            3445555555555555555555555555554422            12368889999999889999999998   88899


Q ss_pred             CCCCCCCChHHHHHHhcCc---------HHHHHHHHHCCCCcc-------cCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          275 EVKNKKGNSPLWLAANGGH---------LSVVELLCKHGADID-------SQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       275 ~~~d~~g~TpL~~A~~~g~---------~~iv~~Ll~~gad~~-------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      +.+|..|.||||+|+..|+         .+++++|+++|++++       .+|..|.||||+|+..|+.++|++|+++|+
T Consensus       178 ~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          178 SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            8888889999999988887         788889999888886       478889999999999999999999999988


Q ss_pred             CCCC
Q psy904          339 QFPS  342 (596)
Q Consensus       339 ~~~~  342 (596)
                      .-|.
T Consensus       258 ~dp~  261 (273)
T 2pnn_A          258 HEPE  261 (273)
T ss_dssp             C---
T ss_pred             CCch
Confidence            5443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.8e-31  Score=264.97  Aligned_cols=216  Identities=24%  Similarity=0.319  Sum_probs=173.4

Q ss_pred             CCCccCCCCCCCcHHHHHHhcCCHHHHHHHHh----CCCCcccc--CCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCC
Q psy904          101 GANKEHRNVSDYTPLSLAASGGYVNIIKLLLT----HGAEINSR--TGSKLGISPLMLAAMN---GHTAAVKLLLDMGSD  171 (596)
Q Consensus       101 g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~----~g~~~~~~--~~~~~g~t~L~~A~~~---g~~eiv~~Ll~~~~~  171 (596)
                      ++..+..+..|.||||.|+..|+.++|+.|++    .+.+++..  ..+..|.||||+|+..   |+.+++++|++.|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            45667788999999999999999998888886    45555422  2245699999999987   999999999999865


Q ss_pred             cc-------cc---cccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccC--------------CCChHHHHHHhcCcHH
Q psy904          172 IN-------AQ---IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAK--------------TGLTPLMEAASGGYVE  227 (596)
Q Consensus       172 ~~-------~~---~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~--------------~g~t~L~~A~~~g~~~  227 (596)
                      +.       ..   .+..|.||||+|+..|+.+++++|++.|++++..+.              .|.||||+|+..|+.+
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~  162 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA  162 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence            32       11   245789999999999999999999999999999887              7999999999999999


Q ss_pred             HHHHHHh---CCCCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCCC-------CCCCCCChHHHHH
Q psy904          228 VGRVLLD---KGADVNAPPVPSSRDTALTIAADKGH---------CRFVELLLSKGAQVE-------VKNKKGNSPLWLA  288 (596)
Q Consensus       228 iv~~Ll~---~g~~~~~~~~~~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~di~-------~~d~~g~TpL~~A  288 (596)
                      ++++|++   .|++++.  .+..|.||||+|+..|+         .+++++|+++|++++       ..|..|.||||+|
T Consensus       163 ~v~~Ll~~~~~gad~~~--~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          163 IVKFLLQNSWQPADISA--RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHHCSSCCCCTTC--CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHhcccCCCCcee--eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            9999999   8999987  56899999999999888         899999999999997       5899999999999


Q ss_pred             HhcCcHHHHHHHHHCCC-CcccCCCCCCCHH
Q psy904          289 ANGGHLSVVELLCKHGA-DIDSQDNRKVSCL  318 (596)
Q Consensus       289 ~~~g~~~iv~~Ll~~ga-d~~~~~~~g~t~L  318 (596)
                      +..|+.++|++|+++|+ |+......+.+|-
T Consensus       241 ~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          241 ASSGKIGVLAYILQREIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHTTCHHHHHHHHHHHTC-------------
T ss_pred             HHhChHHHHHHHHHCCCCCchhhhhhhhhcc
Confidence            99999999999999999 8887777666654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=2.6e-31  Score=261.73  Aligned_cols=139  Identities=22%  Similarity=0.213  Sum_probs=121.9

Q ss_pred             CcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCC------------CCCCCcHHHHHHHcCcHHHHHHHHH---
Q psy904          205 NVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPV------------PSSRDTALTIAADKGHCRFVELLLS---  269 (596)
Q Consensus       205 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~------------~~~g~t~L~~A~~~~~~~iv~~Ll~---  269 (596)
                      +++..+..|.||||+|+..|+.+++++|++.|++++....            +..|.||||+|+..|+.++|++|++   
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  164 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH  164 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            3444556888999999999999999999999888887431            1579999999999999999999999   


Q ss_pred             CCCCCCCCCCCCChHHHHHHhcCc---------HHHHHHHHHCCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy904          270 KGAQVEVKNKKGNSPLWLAANGGH---------LSVVELLCKHGADI-------DSQDNRKVSCLMAAFRKGHVKAVRWM  333 (596)
Q Consensus       270 ~g~di~~~d~~g~TpL~~A~~~g~---------~~iv~~Ll~~gad~-------~~~~~~g~t~L~~A~~~g~~~iv~~L  333 (596)
                      +|++++.+|..|.||||+|+..++         .+++++|+++|+++       +..|..|.||||+|+..|+.++|++|
T Consensus       165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  244 (260)
T 3jxi_A          165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI  244 (260)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999998877         79999999999998       67999999999999999999999999


Q ss_pred             HhCcCCCCCc
Q psy904          334 VNHVAQFPSD  343 (596)
Q Consensus       334 l~~~~~~~~~  343 (596)
                      +++|+..+.+
T Consensus       245 l~~g~~~~~~  254 (260)
T 3jxi_A          245 IRREIADAAA  254 (260)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHhCCCcccc
Confidence            9999864443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.5e-31  Score=261.23  Aligned_cols=209  Identities=24%  Similarity=0.205  Sum_probs=158.6

Q ss_pred             CCChHHHHHHHCCcHH----HHHHHHhCCCCccC----CCCCCCcHHHHHHhc---CCHHHHHHHHhCCCCccccC----
Q psy904           77 TKDTPLSLACSGGRYE----VVELLLTRGANKEH----RNVSDYTPLSLAASG---GYVNIIKLLLTHGAEINSRT----  141 (596)
Q Consensus        77 ~~~t~L~~A~~~g~~e----ivk~LL~~g~~~~~----~d~~g~t~L~~A~~~---g~~eiv~~Ll~~g~~~~~~~----  141 (596)
                      +|.||||+|+..|+.+    ++++|++.|++++.    .+..|.||||+|+..   |+.+++++|++.|++++...    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3678899999988886    66777778888887    788888888888888   88888888888877655322    


Q ss_pred             -----CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChH
Q psy904          142 -----GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP  216 (596)
Q Consensus       142 -----~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~  216 (596)
                           .+..|.||||+|+..|+.+++++|+++|++++.... .+.+                    ..+.+..+..|.||
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~~~~--------------------~~~~~~~~~~g~tp  139 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC-GRFF--------------------QKHQGTCFYFGELP  139 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC-SGGG--------------------SCCSSSCCCSCSSH
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccc-cccc--------------------cccccccccCCCCH
Confidence                 122355555555555555555555555555444311 1100                    01122223349999


Q ss_pred             HHHHHhcCcHHHHHHHHh---CCCCCCCCCCCCCCCcHHHHHHH--cCcHH-------HHHHHHHCCCCC-------CCC
Q psy904          217 LMEAASGGYVEVGRVLLD---KGADVNAPPVPSSRDTALTIAAD--KGHCR-------FVELLLSKGAQV-------EVK  277 (596)
Q Consensus       217 L~~A~~~g~~~iv~~Ll~---~g~~~~~~~~~~~g~t~L~~A~~--~~~~~-------iv~~Ll~~g~di-------~~~  277 (596)
                      ||+|+..|+.+++++|++   .|++++.  .+..|.||||+|+.  .++.+       ++++|+++|+++       +.+
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~--~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~  217 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEA--TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS  217 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTC--CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCC
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCc--cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccccc
Confidence            999999999999999999   8998887  56789999999998  78888       999999999999       899


Q ss_pred             CCCCChHHHHHHhcCcHHHHHHHHHCCCCcc
Q psy904          278 NKKGNSPLWLAANGGHLSVVELLCKHGADID  308 (596)
Q Consensus       278 d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  308 (596)
                      |..|.||||+|+..|+.+++++|+++|+++.
T Consensus       218 d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          218 NHQGLTPLKLAAKEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence            9999999999999999999999999987654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=7.1e-33  Score=285.96  Aligned_cols=277  Identities=17%  Similarity=0.132  Sum_probs=180.1

Q ss_pred             cHHHHHHh-cCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc--cccCCCChHHHHHHHCC
Q psy904           13 TALTLACA-GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA--QSERTKDTPLSLACSGG   89 (596)
Q Consensus        13 t~L~~A~~-~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~--~~~~~~~t~L~~A~~~g   89 (596)
                      ++|++|+. .++.+++++|++.|++.       .||||+|+..|+.++|++|+++|+....  ..+..+.||||+|+..|
T Consensus        67 l~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G  139 (376)
T 2aja_A           67 LCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENG  139 (376)
T ss_dssp             HHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcC
Confidence            46677766 57788888888877654       3888888888888888888888773211  11234567888888888


Q ss_pred             cHHHHHHHHhCCCCc---cCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHH-HcCCHHHHHHH
Q psy904           90 RYEVVELLLTRGANK---EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAA-MNGHTAAVKLL  165 (596)
Q Consensus        90 ~~eivk~LL~~g~~~---~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~-~~g~~eiv~~L  165 (596)
                      +.++|++|+++|+++   +..+.+ .||||+|+..|+.++|++|+++|++++....+..|.||||+|+ .+|+.+++++|
T Consensus       140 ~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~L  218 (376)
T 2aja_A          140 HLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFL  218 (376)
T ss_dssp             CHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHH
T ss_pred             CHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHH
Confidence            888888888888652   222222 7888888888888888888888887654111223778888888 88888888888


Q ss_pred             HhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHH------------HHHHH
Q psy904          166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV------------GRVLL  233 (596)
Q Consensus       166 l~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~i------------v~~Ll  233 (596)
                      ++.|.        .+.|||+.|+.+|+.+++++|++.|++++..+    ++++.|+..|+.++            ++.|+
T Consensus       219 l~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li  286 (376)
T 2aja_A          219 LDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLI  286 (376)
T ss_dssp             TTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH
T ss_pred             HhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHH
Confidence            87653        25688888888888888888888887765543    35666776666553            33444


Q ss_pred             hCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC---------CCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          234 DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK---------GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       234 ~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~---------g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      ..+                    ..+..+.+++|++.         |+++    +.+.||||+|+..|+.++|++|++.|
T Consensus       287 ~~~--------------------~~~~~~~~~~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g~~e~v~lLl~~~  342 (376)
T 2aja_A          287 RRN--------------------DEVLLDDIRFLLSIPGIKALAPTATIP----GDANELLRLALRLGNQGACALLLSIP  342 (376)
T ss_dssp             HHC--------------------CGGGHHHHHHHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             Hcc--------------------hhhHHHHHHHHHhChhhhhhhccCCCC----CCccHHHHHHHHcCcHHHHHHHHcCh
Confidence            432                    11345677777763         4444    35679999999999999999999875


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       305 ad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                         ..++..+.|++++|-..|+.++++.-+.+
T Consensus       343 ---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          343 ---SVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             ---HHHHSCC----------------------
T ss_pred             ---HHHHHHHHhccccccccccccHHHHHHHH
Confidence               56677899999999999999988765543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=6.3e-30  Score=251.81  Aligned_cols=207  Identities=24%  Similarity=0.257  Sum_probs=153.1

Q ss_pred             CCCChHHHHHHHCCcHHH----HHHHHhCCCCccCCC----CCCCcHHHHHH---hcCCHHHHHHHHhCCCCccccCCCC
Q psy904           76 RTKDTPLSLACSGGRYEV----VELLLTRGANKEHRN----VSDYTPLSLAA---SGGYVNIIKLLLTHGAEINSRTGSK  144 (596)
Q Consensus        76 ~~~~t~L~~A~~~g~~ei----vk~LL~~g~~~~~~d----~~g~t~L~~A~---~~g~~eiv~~Ll~~g~~~~~~~~~~  144 (596)
                      ..+.++||.|+..|+.++    +++|+..|.+++..+    ..|.||||+|+   ..|+.+++++|++.|++.....   
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~---   79 (260)
T 3jxi_A            3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR---   79 (260)
T ss_dssp             CCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH---
T ss_pred             cchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH---
Confidence            456788888888888884    444444777776555    55778888777   5677777777777654321100   


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCccccc--------------
Q psy904          145 LGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRA--------------  210 (596)
Q Consensus       145 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~--------------  210 (596)
                                         .++  ...+.. .+..|.||||+|+..|+.+++++|++.|++++..+              
T Consensus        80 -------------------~~~--~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  137 (260)
T 3jxi_A           80 -------------------EFI--NSPFRD-VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF  137 (260)
T ss_dssp             -------------------HHH--TCCBCC-SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSC
T ss_pred             -------------------hhh--cccccc-cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccc
Confidence                               000  011111 12345566666666666666666666666666555              


Q ss_pred             CCCChHHHHHHhcCcHHHHHHHHh---CCCCCCCCCCCCCCCcHHHHHHHcCc---------HHHHHHHHHCCCCC----
Q psy904          211 KTGLTPLMEAASGGYVEVGRVLLD---KGADVNAPPVPSSRDTALTIAADKGH---------CRFVELLLSKGAQV----  274 (596)
Q Consensus       211 ~~g~t~L~~A~~~g~~~iv~~Ll~---~g~~~~~~~~~~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~di----  274 (596)
                      ..|.||||+|+..|+.+++++|++   .|++++.  .+..|.||||+|+..++         .+++++|+++|+++    
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~--~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~  215 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRR--QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT  215 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC--CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc--cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccccc
Confidence            679999999999999999999999   8888887  56789999999998777         78999999999998    


Q ss_pred             ---CCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCccc
Q psy904          275 ---EVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS  309 (596)
Q Consensus       275 ---~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~  309 (596)
                         +..|..|.||||+|+..|+.++|++|+++|+++..
T Consensus       216 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          216 NLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             chhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence               67999999999999999999999999999876543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=7.8e-30  Score=253.62  Aligned_cols=189  Identities=25%  Similarity=0.337  Sum_probs=171.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCC--cccccccCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccCCCChHHHHHH--
Q psy904          147 ISPLMLAAMNGHTAAVKLLLDMGSD--INAQIETNRNTALTLACFQGRHEVVSLLLDRKA-NVEHRAKTGLTPLMEAA--  221 (596)
Q Consensus       147 ~t~L~~A~~~g~~eiv~~Ll~~~~~--~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~-~~~~~~~~g~t~L~~A~--  221 (596)
                      .+++|.|+..|+.+.++.|+..+.+  ++.. +..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+  
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            4577888888888888888776544  3433 6788999999999999999999999998 99999999999999999  


Q ss_pred             ---hcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHH
Q psy904          222 ---SGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVE  298 (596)
Q Consensus       222 ---~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~  298 (596)
                         ..++.+++++|+..|.+++.  .+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.++|+
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~~--~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINAK--ASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               66889999999999977765  5578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          299 LLCK-HGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       299 ~Ll~-~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      +|++ .|++++.+|..|.|||++|+..|+.+++++|++++.
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            9999 899999999999999999999999999999998753

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.2e-28  Score=226.07  Aligned_cols=159  Identities=36%  Similarity=0.495  Sum_probs=147.7

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904          177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA  256 (596)
Q Consensus       177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~  256 (596)
                      ...+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.  .+..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--VDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHH
Confidence            34456899999999999999999999999999999999999999999999999999999998887  5678999999999


Q ss_pred             HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      ..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             c
Q psy904          337 V  337 (596)
Q Consensus       337 ~  337 (596)
                      |
T Consensus       169 G  169 (169)
T 2y1l_E          169 N  169 (169)
T ss_dssp             -
T ss_pred             C
Confidence            6

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.2e-28  Score=225.41  Aligned_cols=159  Identities=26%  Similarity=0.411  Sum_probs=150.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc
Q psy904          179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK  258 (596)
Q Consensus       179 ~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~  258 (596)
                      .|.||||.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHc
Confidence            467899999999999999999999999999999999999999999999999999999999887  567899999999999


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|+++++
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             C
Q psy904          339 Q  339 (596)
Q Consensus       339 ~  339 (596)
                      .
T Consensus       160 ~  160 (167)
T 3v31_A          160 K  160 (167)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=7.4e-29  Score=232.48  Aligned_cols=159  Identities=26%  Similarity=0.363  Sum_probs=150.6

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904          177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA  256 (596)
Q Consensus       177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~  256 (596)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+
T Consensus        32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~  109 (192)
T 2rfm_A           32 DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWSI  109 (192)
T ss_dssp             CTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999998887  5678999999999


Q ss_pred             HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      ..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             c
Q psy904          337 V  337 (596)
Q Consensus       337 ~  337 (596)
                      +
T Consensus       190 ~  190 (192)
T 2rfm_A          190 R  190 (192)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.2e-28  Score=224.18  Aligned_cols=157  Identities=30%  Similarity=0.350  Sum_probs=144.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcC
Q psy904          180 RNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG  259 (596)
Q Consensus       180 ~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~  259 (596)
                      ..||||.|+..|+.+++++|++.|++++..+..|.||||+|+. |+.+++++|++.|++++.  .+..|.||||+|+..|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAG   81 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHT
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcC
Confidence            4589999999999999999999999999999999999999999 999999999999998887  5678999999999999


Q ss_pred             cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD-IDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++ ++..+..|.|||++|+..|+.+++++|+++|+
T Consensus        82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA  161 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA  161 (162)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999998 59999999999999999999999999999997


Q ss_pred             C
Q psy904          339 Q  339 (596)
Q Consensus       339 ~  339 (596)
                      +
T Consensus       162 d  162 (162)
T 1ihb_A          162 G  162 (162)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.8e-28  Score=225.50  Aligned_cols=156  Identities=28%  Similarity=0.428  Sum_probs=85.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC-cccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904          182 TALTLACFQGRHEVVSLLLDRKAN-VEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH  260 (596)
Q Consensus       182 t~L~~A~~~~~~~ii~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~  260 (596)
                      +|||.|+..|+.+++++|+..+.+ ++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLASTGGY   81 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh--hcccCCCHHHHHHHCCC
Confidence            445555555555555555554444 444455555555555555555555555555555544  33445555555555555


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      .+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..|+.+++++|++++++
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~  160 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK  160 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555555555543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.7e-28  Score=224.30  Aligned_cols=170  Identities=25%  Similarity=0.293  Sum_probs=153.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      +.+|||.|+..|+.+++++|+..+.......+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            45899999999999999999999987444457889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      .+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus        82 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A           82 TDIVGLLLERDVDINI--YDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             HHHHHHHHTTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            9999999999999887  56789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCCCH
Q psy904          306 DIDSQDNRKVSC  317 (596)
Q Consensus       306 d~~~~~~~g~t~  317 (596)
                      ++...+..|.||
T Consensus       160 ~~~~~~~~~~~p  171 (172)
T 3v30_A          160 KLFQSNLVPADP  171 (172)
T ss_dssp             HHSCC-------
T ss_pred             HHhcccCCCCCC
Confidence            999888888876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=3.2e-31  Score=273.65  Aligned_cols=252  Identities=17%  Similarity=0.176  Sum_probs=182.9

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHHCCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc--cccCCCChHHH
Q psy904            9 SNHDTALTLACAGGHEELVELLLSRGADI---EHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA--QSERTKDTPLS   83 (596)
Q Consensus         9 ~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i---~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~--~~~~~~~t~L~   83 (596)
                      .++.||||+||..|++++|++|++.|+..   +..+..|.||||+|+..|+.++|++|+++|+++..  ..... .||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            45679999999999999999999998832   23445678999999999999999999999976321  11112 79999


Q ss_pred             HHHHCCcHHHHHHHHhCCCCccC--CCCCCCcHHHHHH-hcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHH
Q psy904           84 LACSGGRYEVVELLLTRGANKEH--RNVSDYTPLSLAA-SGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA  160 (596)
Q Consensus        84 ~A~~~g~~eivk~LL~~g~~~~~--~d~~g~t~L~~A~-~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~e  160 (596)
                      +|+..|+.++|++|+++|++++.  .+..|.||||+|+ ..|+.++|++|++.|..         |.|||++|+.+|+.+
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---------~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---------LAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---------HHHHHHCTTTTTTTT
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---------cchHHHHHHHCCCHH
Confidence            99999999999999999999877  8888999999999 99999999999997632         679999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHH------------HHHHhcCCCcccccCCCChHHHHHHhcCcHHH
Q psy904          161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVV------------SLLLDRKANVEHRAKTGLTPLMEAASGGYVEV  228 (596)
Q Consensus       161 iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii------------~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~i  228 (596)
                      ++++|++.|++++..     .++++.|+.+|+.+++            +.|+..+                  ..+..+.
T Consensus       240 vv~lL~~~ga~~~~~-----~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~------------------~~~~~~~  296 (376)
T 2aja_A          240 VNPFIARHVNRLKEM-----HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN------------------DEVLLDD  296 (376)
T ss_dssp             HHHHHHHHHHHHHHH-----HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC------------------CGGGHHH
T ss_pred             HHHHHHhcCcccccc-----cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc------------------hhhHHHH
Confidence            999999998876543     2467777777776633            3344332                  1133566


Q ss_pred             HHHHHhC---------CCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHH
Q psy904          229 GRVLLDK---------GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL  299 (596)
Q Consensus       229 v~~Ll~~---------g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~  299 (596)
                      +++|++.         |+++      ..+.||||+|+..|+.+++++|++.|   ..++..|.|++.+|-..|..+++++
T Consensus       297 ~~~Ll~~~~vk~l~~~g~~~------n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~  367 (376)
T 2aja_A          297 IRFLLSIPGIKALAPTATIP------GDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAV  367 (376)
T ss_dssp             HHHHHTSTTTGGGSSCCSST------TCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC------------------
T ss_pred             HHHHHhChhhhhhhccCCCC------CCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHH
Confidence            6777763         3333      34669999999999999999999975   5677889999999999999999886


Q ss_pred             HHH
Q psy904          300 LCK  302 (596)
Q Consensus       300 Ll~  302 (596)
                      -+.
T Consensus       368 ~~~  370 (376)
T 2aja_A          368 ALE  370 (376)
T ss_dssp             ---
T ss_pred             HHH
Confidence            554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=9.6e-28  Score=216.23  Aligned_cols=150  Identities=30%  Similarity=0.375  Sum_probs=136.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904          181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH  260 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~  260 (596)
                      .++|+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--RTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCh
Confidence            378888888889999999988888776 477889999999999999999999999988876  55788999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy904          261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM  333 (596)
Q Consensus       261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~L  333 (596)
                      .+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=2.8e-28  Score=242.43  Aligned_cols=190  Identities=22%  Similarity=0.276  Sum_probs=163.8

Q ss_pred             CcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHH--
Q psy904          112 YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLAC--  188 (596)
Q Consensus       112 ~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~--  188 (596)
                      .+++|.|+..|++..++.++..+.+......+..|.||||+|+..|+.+++++|++.|+ +++.. +..|.||||+|+  
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQ-NRAGYSPIMLTALA  155 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCC-CTTSCCHHHHGGGC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCC-CCCCCCHHHHHHHH
Confidence            45677788888888887777665553333344558888888888888888888888887 55554 677888999888  


Q ss_pred             ---HcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHH
Q psy904          189 ---FQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVE  265 (596)
Q Consensus       189 ---~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~  265 (596)
                         ..++.+++.+|+..|..++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~--~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV--QDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCHHHHHHHCCCHHHHH
Confidence               56888999999999999988899999999999999999999999999999988  5679999999999999999999


Q ss_pred             HHHH-CCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          266 LLLS-KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       266 ~Ll~-~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      +|++ .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999 89999999999999999999999999999999864

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.8e-27  Score=216.34  Aligned_cols=157  Identities=33%  Similarity=0.410  Sum_probs=144.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      ..|||+.|+..|+.+++++|++.|++++.. +..|.||||+|+. ++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            458999999999999999999999888765 6778899999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC-CCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d-i~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      .+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|
T Consensus        83 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNI--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999999999887  567899999999999999999999999998 6999999999999999999999999999999


Q ss_pred             CC
Q psy904          305 AD  306 (596)
Q Consensus       305 ad  306 (596)
                      ||
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=9.7e-28  Score=219.00  Aligned_cols=158  Identities=29%  Similarity=0.295  Sum_probs=137.8

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHh-cCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904          178 TNRNTALTLACFQGRHEVVSLLLD-RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA  256 (596)
Q Consensus       178 ~~~~t~L~~A~~~~~~~ii~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~  256 (596)
                      ..+.++|+.|+..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~   83 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNAC   83 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc--cCCCCCCHHHHHH
Confidence            445688888888888888888887 4556677778888999999999999999999999988877  5578889999999


Q ss_pred             HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      ..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|.. |+.+++++|+++
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~  162 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGD  162 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999766 889999999988


Q ss_pred             cC
Q psy904          337 VA  338 (596)
Q Consensus       337 ~~  338 (596)
                      |+
T Consensus       163 gA  164 (165)
T 3twr_A          163 AA  164 (165)
T ss_dssp             --
T ss_pred             cc
Confidence            75

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=5.8e-27  Score=214.84  Aligned_cols=156  Identities=37%  Similarity=0.506  Sum_probs=146.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      +.++|+.|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   92 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH   92 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            568999999999999999999999988875 6788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      .+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        93 ~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           93 LEIVEVLLKNGADVNA--NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999887  5678999999999999999999999999999999999999999999999999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=2.1e-27  Score=222.60  Aligned_cols=158  Identities=28%  Similarity=0.376  Sum_probs=141.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhc
Q psy904          144 KLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASG  223 (596)
Q Consensus       144 ~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~  223 (596)
                      ..|.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..
T Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhccccccc-cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            34778888888888888888888888777665 56788899999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904          224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH  303 (596)
Q Consensus       224 g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  303 (596)
                      |+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       112 ~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          112 GYSEMSYFLLEHGANVND--RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             TCHHHHHHHHHTTCCSSC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            999999999999999887  567899999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q psy904          304 G  304 (596)
Q Consensus       304 g  304 (596)
                      |
T Consensus       190 ~  190 (192)
T 2rfm_A          190 R  190 (192)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.8e-27  Score=220.39  Aligned_cols=159  Identities=25%  Similarity=0.284  Sum_probs=96.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcC
Q psy904          181 NTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG  259 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~  259 (596)
                      .++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNRGDDTPLHLAASHG   83 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcC
Confidence            3555555555555555555555 444555555666666666666666666666666655554  3345566666666666


Q ss_pred             cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++..++++|+++|++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~  163 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN  163 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             CC
Q psy904          340 FP  341 (596)
Q Consensus       340 ~~  341 (596)
                      +.
T Consensus       164 ~~  165 (179)
T 3f6q_A          164 LN  165 (179)
T ss_dssp             CS
T ss_pred             cc
Confidence            44

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=2.2e-27  Score=217.04  Aligned_cols=159  Identities=26%  Similarity=0.314  Sum_probs=146.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      |.||||.|+..|+.+++++|++.+.+++.. +..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            678999999999999999999988887765 6678899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      .+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++++
T Consensus        82 ~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNE--YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLL  159 (167)
T ss_dssp             HHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHH
Confidence            9999999999999887  56789999999999999999999999999999999999999999999999999999999876


Q ss_pred             Cc
Q psy904          306 DI  307 (596)
Q Consensus       306 d~  307 (596)
                      ++
T Consensus       160 ~~  161 (167)
T 3v31_A          160 KL  161 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=5e-27  Score=217.43  Aligned_cols=166  Identities=29%  Similarity=0.329  Sum_probs=151.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCC-CcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcC
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGS-DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG  224 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  224 (596)
                      +.++|+.|+..|+.+++++|++.+. +++. .+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            6688999999999999999998844 4444 4778899999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       225 ~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      +.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|
T Consensus        84 ~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINA--VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             CHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999987  5688999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCC
Q psy904          305 ADIDSQDNRK  314 (596)
Q Consensus       305 ad~~~~~~~g  314 (596)
                      ++++..+..+
T Consensus       162 ~~~~~~~~~~  171 (179)
T 3f6q_A          162 QNLNRIPYKD  171 (179)
T ss_dssp             CCCSCBCCCC
T ss_pred             cCcccCCccc
Confidence            9998876544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=7.9e-27  Score=210.77  Aligned_cols=152  Identities=28%  Similarity=0.371  Sum_probs=141.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcC
Q psy904          181 NTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKG  259 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~  259 (596)
                      .|+||.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++.  .+..|.||||+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV--QDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTT
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHcC
Confidence            4889999999999999999988 44888889999999999 999999999999999999887  5678999999999999


Q ss_pred             cHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          260 HCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       260 ~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++ ++++..|..|.|||++|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999 99999999999999999999999999999975

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=5.3e-30  Score=247.34  Aligned_cols=209  Identities=20%  Similarity=0.163  Sum_probs=169.7

Q ss_pred             HHHHhCCCCccccC-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q psy904          128 KLLLTHGAEINSRT-GSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV  206 (596)
Q Consensus       128 ~~Ll~~g~~~~~~~-~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~  206 (596)
                      +.|+..|++++... .+..+.||||+|+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|++.|+++
T Consensus         2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            44555555554322 2333668889999999999999999988888775 678889999999999999999999999999


Q ss_pred             ccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHH--HHcCcHHHHHHHHHCCCCCCCCCCCCChH
Q psy904          207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIA--ADKGHCRFVELLLSKGAQVEVKNKKGNSP  284 (596)
Q Consensus       207 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A--~~~~~~~iv~~Ll~~g~di~~~d~~g~Tp  284 (596)
                      +..+..|.||||+|+..|+.+++++|++.|++++.. .+..|.||||+|  +..|+.+++++|+++|++++..|..|.||
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~-~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  159 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT-TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA  159 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc-cCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence            999999999999999999999999999999998873 235899999999  99999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHCCCC--cccCCCCCCCHHHHHHHcCCHHHHHH-HHhCcCCCC
Q psy904          285 LWLAANGGHLSVVELLCKHGAD--IDSQDNRKVSCLMAAFRKGHVKAVRW-MVNHVAQFP  341 (596)
Q Consensus       285 L~~A~~~g~~~iv~~Ll~~gad--~~~~~~~g~t~L~~A~~~g~~~iv~~-Ll~~~~~~~  341 (596)
                      |+.++..+.   +++|+..|++  ++.+|..|.|||++|+..|+.++|+. +++..+.+.
T Consensus       160 l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~  216 (229)
T 2vge_A          160 LWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK  216 (229)
T ss_dssp             SSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC
T ss_pred             HHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCC
Confidence            996655543   3678889988  77889999999999999999999865 444444433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2.8e-26  Score=206.59  Aligned_cols=150  Identities=31%  Similarity=0.400  Sum_probs=140.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcH
Q psy904          147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV  226 (596)
Q Consensus       147 ~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  226 (596)
                      .++|+.|+..|+.+++++|++.|.+++  .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            478999999999999999999988765  367788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHH
Q psy904          227 EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL  300 (596)
Q Consensus       227 ~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~L  300 (596)
                      +++++|+++|++++.  .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADVNA--KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999887  567899999999999999999999999999999999999999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.3e-26  Score=211.54  Aligned_cols=158  Identities=36%  Similarity=0.416  Sum_probs=141.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcC
Q psy904          145 LGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG  224 (596)
Q Consensus       145 ~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  224 (596)
                      .+.++|+.|+..|+.+++++|+..+.......+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|
T Consensus         7 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            7 EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence            36788999999999999999988544333334667789999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       225 ~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      +.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++|
T Consensus        87 ~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A           87 HYEVAELLVKHGAVVNV--ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             CHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             cHHHHHHHHhCCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            99999999999999987  56789999999999999999999999999999999999999999877 8999999999988


Q ss_pred             C
Q psy904          305 A  305 (596)
Q Consensus       305 a  305 (596)
                      +
T Consensus       164 A  164 (165)
T 3twr_A          164 A  164 (165)
T ss_dssp             -
T ss_pred             c
Confidence            6

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=2.8e-27  Score=230.02  Aligned_cols=186  Identities=16%  Similarity=0.150  Sum_probs=132.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      |.||||.|+..|+.++++.|+++|++++..  ..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~   82 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGH   82 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcccC--chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            778888888888888888888888887753  567799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC-hHHHHH--HhcCcHHHHHHHHH
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN-SPLWLA--ANGGHLSVVELLCK  302 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~-TpL~~A--~~~g~~~iv~~Ll~  302 (596)
                      .+++++|+++|++++.  .+..|.||||+|+..|+.+++++|+++|++++..+..|. ||||+|  +..|+.+++++|+.
T Consensus        83 ~~~v~~Ll~~ga~~~~--~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~  160 (239)
T 1ycs_B           83 TEIVKFLVQFGVNVNA--ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  160 (239)
T ss_dssp             HHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHH
Confidence            9999999999998887  567899999999999999999999999999999988877 999999  78899999999999


Q ss_pred             CCCCcccC---------CCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904          303 HGADIDSQ---------DNRKVSCLMAAFRKGHVKAVRWMVNHV  337 (596)
Q Consensus       303 ~gad~~~~---------~~~g~t~L~~A~~~g~~~iv~~Ll~~~  337 (596)
                      +|++++..         +..+.+++++++..|.  ++..|...+
T Consensus       161 ~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~  202 (239)
T 1ycs_B          161 VQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHRED  202 (239)
T ss_dssp             HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCT
T ss_pred             hhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecC
Confidence            99887765         5667888888877776  344444443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=4.4e-29  Score=240.89  Aligned_cols=180  Identities=24%  Similarity=0.242  Sum_probs=82.0

Q ss_pred             hHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCH
Q psy904           80 TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHT  159 (596)
Q Consensus        80 t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~  159 (596)
                      ||||+|+..|+.++|++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+.  .|.||||+|+..|+.
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~--~g~tpLh~A~~~g~~  100 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS--HGWTPLHCAASCNDT  100 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHcCCH
Confidence            444444444444444444444444444444444444444444444444444444443333222  133444444444444


Q ss_pred             HHHHHHHhcCCCcccccccCCCcHHHHH--HHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCC
Q psy904          160 AAVKLLLDMGSDINAQIETNRNTALTLA--CFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA  237 (596)
Q Consensus       160 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A--~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~  237 (596)
                      +++++|++.|++++...+..|.||||+|  +..++.+++++|++.|++++..+..|.+|+                    
T Consensus       101 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l--------------------  160 (229)
T 2vge_A          101 VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL--------------------  160 (229)
T ss_dssp             HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES--------------------
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH--------------------
Confidence            4444444444433333222333444444  344444444444444444444333333333                    


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCC--CCCCCCCCChHHHHHHhcCcHHHHHH
Q psy904          238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ--VEVKNKKGNSPLWLAANGGHLSVVEL  299 (596)
Q Consensus       238 ~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~d--i~~~d~~g~TpL~~A~~~g~~~iv~~  299 (596)
                                     +.++....   +++|+..|++  ++.+|..|.||||+|+..|+.++|+.
T Consensus       161 ---------------~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          161 ---------------WDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             ---------------SCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             ---------------HHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence                           32222211   1355566666  55667777777777777777777764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.1e-25  Score=201.34  Aligned_cols=153  Identities=27%  Similarity=0.395  Sum_probs=138.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcC
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDM-GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGG  224 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g  224 (596)
                      +.|+|+.|+..|+.+++++|++. +.+++.. +..|.||||+ +..|+.+++++|++.|++++..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            45789999999999999999988 2255554 6778899999 9999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904          225 YVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH  303 (596)
Q Consensus       225 ~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  303 (596)
                      +.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++ ++++..|..|.||||+|+..|+.+++++|+++
T Consensus        80 ~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNV--PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999887  567899999999999999999999999 99999999999999999999999999999874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.5e-26  Score=224.72  Aligned_cols=162  Identities=17%  Similarity=0.204  Sum_probs=121.7

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHH
Q psy904          178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD  257 (596)
Q Consensus       178 ~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~  257 (596)
                      ..|.||||.|+..++.+++..|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++.  .+..|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVC   79 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC--CCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHH
Confidence            45789999999999999999999999999864 7789999999999999999999999998887  56889999999999


Q ss_pred             cCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCC-CHHHHH--HHcCCHHHHHHHH
Q psy904          258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKV-SCLMAA--FRKGHVKAVRWMV  334 (596)
Q Consensus       258 ~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~-t~L~~A--~~~g~~~iv~~Ll  334 (596)
                      .|+.+++++|+++|++++..|..|.||||+|+..|+.++|++|+++|++++..+..|. |||++|  +..|+.+++++|+
T Consensus        80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll  159 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY  159 (239)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998887 999999  7889999999999


Q ss_pred             hCcCCCCC
Q psy904          335 NHVAQFPS  342 (596)
Q Consensus       335 ~~~~~~~~  342 (596)
                      .+|+++..
T Consensus       160 ~~~a~~~~  167 (239)
T 1ycs_B          160 GVQEKMGI  167 (239)
T ss_dssp             HHHHHTTT
T ss_pred             Hhhhcccc
Confidence            99886554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=8e-26  Score=199.34  Aligned_cols=134  Identities=26%  Similarity=0.311  Sum_probs=126.9

Q ss_pred             CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCC-C
Q psy904          203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK-G  281 (596)
Q Consensus       203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~-g  281 (596)
                      +++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+. ++.+++++|+++|++++..|.. |
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g   78 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA--LNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL   78 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC--cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence            567888899999999999999999999999999999887  56789999999999 9999999999999999999999 9


Q ss_pred             ChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          282 NSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       282 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      .||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=3.8e-25  Score=205.81  Aligned_cols=153  Identities=16%  Similarity=0.168  Sum_probs=128.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccc-CCCChHHHHHHhcCcH----HHHHHHHhCCCCCCCCCCCCCCCcHHHHH
Q psy904          181 NTALTLACFQGRHEVVSLLLDRKANVEHRA-KTGLTPLMEAASGGYV----EVGRVLLDKGADVNAPPVPSSRDTALTIA  255 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~----~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A  255 (596)
                      .++|+.|+..|+.+.+..++..+.+  ..+ ..|.||||+|+..|+.    +++++|+++|+++|.  .+..|.||||+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~--~d~~g~TpLh~a   82 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS--RTKEGTTLFFPL   82 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC--CCTTCCCTHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC--CCCCCCcHHHHH
Confidence            4677888888888888777776543  334 6688888888888864    488889999988887  457888999998


Q ss_pred             HHcCc------HHHHHHHHHCCCCCCCCCCCCC-hHHHHHHhcC-----cHHHHHHHHH-CCCCcccCCCCCCCHHHHHH
Q psy904          256 ADKGH------CRFVELLLSKGAQVEVKNKKGN-SPLWLAANGG-----HLSVVELLCK-HGADIDSQDNRKVSCLMAAF  322 (596)
Q Consensus       256 ~~~~~------~~iv~~Ll~~g~di~~~d~~g~-TpL~~A~~~g-----~~~iv~~Ll~-~gad~~~~~~~g~t~L~~A~  322 (596)
                      +..++      .+++++|+++|+|+|.+|..|. ||||+|+..+     +.+++++|++ +|++++.+|..|.||||+|+
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            88876      6789999999999999999999 9999999844     4579999999 99999999999999999999


Q ss_pred             HcCCHHHHHHHHhCc
Q psy904          323 RKGHVKAVRWMVNHV  337 (596)
Q Consensus       323 ~~g~~~iv~~Ll~~~  337 (596)
                      ..|+..+|++|++..
T Consensus       163 ~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          163 RCQKPIALKMMEDYI  177 (186)
T ss_dssp             TTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            999999999998754

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=5.1e-25  Score=199.08  Aligned_cols=142  Identities=25%  Similarity=0.288  Sum_probs=108.9

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCc-HHHHH
Q psy904          177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDT-ALTIA  255 (596)
Q Consensus       177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t-~L~~A  255 (596)
                      +..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+ .|+.+++++|++.|++++.  .+..|.| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~--~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC--ADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC--CCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC--cCCCCCcHHHHHH
Confidence            456678888888888888888888888888888888999999885 8889999999999888877  5567888 99999


Q ss_pred             HHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy904          256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAA  321 (596)
Q Consensus       256 ~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A  321 (596)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||.+.+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            999999999999999999999999999999999999999999999999999999888888887643

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=7.2e-24  Score=183.43  Aligned_cols=126  Identities=44%  Similarity=0.648  Sum_probs=106.1

Q ss_pred             CCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhc
Q psy904          212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG  291 (596)
Q Consensus       212 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~  291 (596)
                      +|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCC--cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Confidence            367888888888888888888888877766  456788888888888888888888888888888888888888888888


Q ss_pred             CcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          292 GHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       292 g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      |+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            888888888888888888888888888888888888888888888864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2.1e-24  Score=190.23  Aligned_cols=133  Identities=25%  Similarity=0.326  Sum_probs=121.4

Q ss_pred             CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCC-C
Q psy904          170 SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS-R  248 (596)
Q Consensus       170 ~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~-g  248 (596)
                      ++++.. +..+.||||.|+..++.+++++|++.|++++..+..|.||||+|+. |+.+++++|+++|++++.  .+.. |
T Consensus         3 ~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~--~~~~~g   78 (136)
T 1d9s_A            3 PGIHML-GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC--ADPATL   78 (136)
T ss_dssp             CCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC--CBTTTT
T ss_pred             CCccCC-CCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC--cCCCCC
Confidence            344443 5678899999999999999999999999999999999999999999 999999999999999887  5567 8


Q ss_pred             CcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC
Q psy904          249 DTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD  306 (596)
Q Consensus       249 ~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  306 (596)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999986

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=6.9e-24  Score=186.88  Aligned_cols=126  Identities=35%  Similarity=0.449  Sum_probs=108.7

Q ss_pred             cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy904          210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA  289 (596)
Q Consensus       210 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~  289 (596)
                      ...+.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNA--KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            34567888888888888888888888888776  5577889999999999999999999999999888888999999999


Q ss_pred             hcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904          290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV  337 (596)
Q Consensus       290 ~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  337 (596)
                      ..|+.+++++|+++|++++..|..|.|||++|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999988888999999999999999999988875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1.1e-24  Score=202.74  Aligned_cols=162  Identities=19%  Similarity=0.235  Sum_probs=139.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccccCCCChHHHHHH
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRH----EVVSLLLDRKANVEHRAKTGLTPLMEAA  221 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~----~ii~~Ll~~g~~~~~~~~~g~t~L~~A~  221 (596)
                      ++++|+.|+..|+.+.+..++..+.+.  ..+..|.||||+|+.+++.    +++++|++.|++++..+..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            457889999999999998888877543  3236688999999999875    4899999999999999999999999999


Q ss_pred             hcCc------HHHHHHHHhCCCCCCCCCCCCCCC-cHHHHHHHcC-----cHHHHHHHHH-CCCCCCCCCCCCChHHHHH
Q psy904          222 SGGY------VEVGRVLLDKGADVNAPPVPSSRD-TALTIAADKG-----HCRFVELLLS-KGAQVEVKNKKGNSPLWLA  288 (596)
Q Consensus       222 ~~g~------~~iv~~Ll~~g~~~~~~~~~~~g~-t~L~~A~~~~-----~~~iv~~Ll~-~g~di~~~d~~g~TpL~~A  288 (596)
                      ..|+      .+++++|+++|++++.  .+..|. ||||+|+..+     ..+++++|++ +|+|++.+|..|.||||+|
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~--~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITA--LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSS--CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCc--cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            9886      6889999999999998  567899 9999999944     4579999999 9999999999999999999


Q ss_pred             HhcCcHHHHHHHHHCCCCcccCC
Q psy904          289 ANGGHLSVVELLCKHGADIDSQD  311 (596)
Q Consensus       289 ~~~g~~~iv~~Ll~~gad~~~~~  311 (596)
                      +..|+.++|++|+++....+..+
T Consensus       162 ~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          162 KRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHcCCHHHHHHHHHHHHHHhccc
Confidence            99999999999998765554443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=4.6e-24  Score=192.77  Aligned_cols=134  Identities=27%  Similarity=0.304  Sum_probs=120.0

Q ss_pred             ccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCh-HH
Q psy904          207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS-PL  285 (596)
Q Consensus       207 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~T-pL  285 (596)
                      ...+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+ .|+.+++++|+++|++++.+|..|.| ||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL   82 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNA--PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPV   82 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC--CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            34567889999999999999999999999999887  5678999999986 89999999999999999999999999 99


Q ss_pred             HHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904          286 WLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       286 ~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  343 (596)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++...
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~  140 (156)
T 1bi7_B           83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS  140 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------
T ss_pred             HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999986554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=4.5e-23  Score=178.37  Aligned_cols=126  Identities=49%  Similarity=0.674  Sum_probs=118.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc
Q psy904          179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK  258 (596)
Q Consensus       179 ~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~  258 (596)
                      +|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc--cCCCCCcHHHHHHHc
Confidence            367999999999999999999999999999999999999999999999999999999998887  557899999999999


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC
Q psy904          259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD  306 (596)
Q Consensus       259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  306 (596)
                      ++.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|+|
T Consensus        79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=4e-24  Score=188.59  Aligned_cols=133  Identities=26%  Similarity=0.254  Sum_probs=112.1

Q ss_pred             CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC
Q psy904          203 KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN  282 (596)
Q Consensus       203 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~  282 (596)
                      |+++ .++..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~   77 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND   77 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCC
Confidence            4566 5678889999999999999999999999988876  557888999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          283 SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       283 TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      ||||+|+..|+.+++++|+++|++++..|..|.|||++|+..+..+++.+|..++.
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            99999999999999999999999999999999999999988888888887776654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=5.1e-23  Score=181.27  Aligned_cols=126  Identities=34%  Similarity=0.469  Sum_probs=117.6

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904          177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA  256 (596)
Q Consensus       177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~  256 (596)
                      ...+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA--VDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCCHHHHHH
Confidence            34566999999999999999999999999999999999999999999999999999999999887  5678999999999


Q ss_pred             HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      ..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=1.4e-22  Score=178.69  Aligned_cols=130  Identities=32%  Similarity=0.472  Sum_probs=117.7

Q ss_pred             CCccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHH
Q psy904            4 DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLS   83 (596)
Q Consensus         4 ~~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~   83 (596)
                      |...+.+|.||||+||..|++++|++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||
T Consensus         3 d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~   81 (137)
T 3c5r_A            3 DPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT-GYQNDSPLH   81 (137)
T ss_dssp             -CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CGGGCCHHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCc-CCCCCCHHH
Confidence            4578899999999999999999999999999999999999999999999999999999999999988764 567899999


Q ss_pred             HHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCC
Q psy904           84 LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG  134 (596)
Q Consensus        84 ~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g  134 (596)
                      +|+..|+.+++++|+++|++++..|..|.|||++|+..+..+++.+|...+
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            999999999999999999999999999999999999999998888877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.87  E-value=3.6e-22  Score=172.50  Aligned_cols=112  Identities=29%  Similarity=0.361  Sum_probs=98.2

Q ss_pred             cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q psy904          210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA  289 (596)
Q Consensus       210 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~  289 (596)
                      +..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS--CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            45677899999999999999999999888776  5678889999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904          290 NGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR  323 (596)
Q Consensus       290 ~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~  323 (596)
                      ..|+.+++++|+++|++++.+|..|.|||++|..
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            9999999999999999999999999999999843

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.4e-22  Score=195.69  Aligned_cols=144  Identities=27%  Similarity=0.276  Sum_probs=130.8

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      ++.|.||||+||..|+.++|++|++ |++++..|..|.||||+|+..|+.++|++|+++|++++...+..|.||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            3578899999999999999999999 999999999999999999999999999999999999988776889999999999


Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD  167 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~  167 (596)
                      .|+.++|++|+++|++++..+..|.||||+|+..++.                   ..+.+||++|+..|+.+++++|+.
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-------------------~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-------------------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-------------------cCCCCHHHHHHHcChHHHHHHHHH
Confidence            9999999999999999999999999999999863221                   226799999999999999999998


Q ss_pred             cCCC
Q psy904          168 MGSD  171 (596)
Q Consensus       168 ~~~~  171 (596)
                      .+.+
T Consensus       182 ~~~~  185 (244)
T 3ui2_A          182 QVFE  185 (244)
T ss_dssp             HHEE
T ss_pred             hccc
Confidence            6543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=2.6e-22  Score=186.37  Aligned_cols=141  Identities=28%  Similarity=0.290  Sum_probs=129.5

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      +..|.||||+||..|++++|++|++ |++++..|..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578899999999999999999999 999999999999999999999999999999999999988766889999999999


Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD  167 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~  167 (596)
                      .|+.+++++|+++|++++..|..|.||||+|+..++.                   ..+.++|++|+..|+.+++++|.+
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHHHHHH
Confidence            9999999999999999999999999999999874432                   125689999999999999999976


Q ss_pred             c
Q psy904          168 M  168 (596)
Q Consensus       168 ~  168 (596)
                      +
T Consensus       181 ~  181 (183)
T 3deo_A          181 Q  181 (183)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=4.6e-22  Score=184.67  Aligned_cols=140  Identities=26%  Similarity=0.250  Sum_probs=127.0

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHH
Q psy904          178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD  257 (596)
Q Consensus       178 ~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~  257 (596)
                      ..|.||||.|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|+++|++++... +..|.||||+|+.
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~~A~~  119 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-SSSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCCCHHHHHHh
Confidence            456799999999999999999999 99999999999999999999999999999999999988732 2679999999999


Q ss_pred             cCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       258 ~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++.                 ..+.++|++|+..|+.+++++|.++
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999999999999999999999999999999874332                 4567999999999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.86  E-value=5.8e-22  Score=192.94  Aligned_cols=143  Identities=26%  Similarity=0.254  Sum_probs=128.4

Q ss_pred             cCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHH
Q psy904          178 TNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAAD  257 (596)
Q Consensus       178 ~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~  257 (596)
                      ..|.||||.|+..|+.+++++|++ |++++..+..|.||||+|+..|+.+++++|+++|++++... +..|.||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~-~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD-MRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC-SSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCC-CCCCCCHHHHHHH
Confidence            456799999999999999999999 99999999999999999999999999999999999998732 2679999999999


Q ss_pred             cCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904          258 KGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV  337 (596)
Q Consensus       258 ~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  337 (596)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++                 ...+.|||++|+..|+.+++++|+.++
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            999999999999999999999999999999985221                 256889999999999999999999874


Q ss_pred             CC
Q psy904          338 AQ  339 (596)
Q Consensus       338 ~~  339 (596)
                      .+
T Consensus       184 ~~  185 (244)
T 3ui2_A          184 FE  185 (244)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=2.3e-21  Score=192.34  Aligned_cols=128  Identities=18%  Similarity=0.183  Sum_probs=114.7

Q ss_pred             ChHHHHHHhcCcHHHHHHHHhCCCCCCC----CCCCCCCCcHHHHHHHc---CcHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy904          214 LTPLMEAASGGYVEVGRVLLDKGADVNA----PPVPSSRDTALTIAADK---GHCRFVELLLSKGAQVEVKNKKGNSPLW  286 (596)
Q Consensus       214 ~t~L~~A~~~g~~~iv~~Ll~~g~~~~~----~~~~~~g~t~L~~A~~~---~~~~iv~~Ll~~g~di~~~d~~g~TpL~  286 (596)
                      .++|+.|+..|+...+..++..|++++.    ...+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            4678888888888888888888888652    23467799999999998   8999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904          287 LAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       287 ~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  341 (596)
                      +|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+...
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999999999999999999999998643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=7.4e-22  Score=198.14  Aligned_cols=139  Identities=19%  Similarity=0.099  Sum_probs=112.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccc------ccCCCChHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcH
Q psy904          181 NTALTLACFQGRHEVVSLLLDRKANVEH------RAKTGLTPLMEAASG---GYVEVGRVLLDKGADVNAPPVPSSRDTA  251 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~------~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~g~t~  251 (596)
                      .++|+.|+..++.+++..|+..|++++.      .+..|.||||+|+..   |+.+++++|+++|++++.  .+..|.||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~--~d~~G~Tp  229 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA--KAADGNTA  229 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC--CCTTCCCH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC--CCCCCCCH
Confidence            3678888888888888888888888876      577888999999886   788899999998888877  55788899


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCH
Q psy904          252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHV  327 (596)
Q Consensus       252 L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~  327 (596)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            9999999999999999999999999999999999999999999999999988876      478899999887753

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=5.5e-22  Score=190.14  Aligned_cols=130  Identities=28%  Similarity=0.292  Sum_probs=91.6

Q ss_pred             cCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHC-CCCCCCCCCCCChHHHHH
Q psy904          210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLA  288 (596)
Q Consensus       210 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~-g~di~~~d~~g~TpL~~A  288 (596)
                      +..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.++|++|+++ |++++..|..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNG--LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccc--cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            45566777777777777777777777777665  446677777777777777777777777 777777777777777777


Q ss_pred             HhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904          289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       289 ~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  341 (596)
                      +..|+.++|++|+++|++++.+|..|.|||++|+..|+.++++.|+.+++...
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            77777777777777777777777777777777777777777777777776543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=1.3e-21  Score=187.55  Aligned_cols=136  Identities=26%  Similarity=0.285  Sum_probs=115.0

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhC-CCCCCCCCCCCCCCcHHHHH
Q psy904          177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK-GADVNAPPVPSSRDTALTIA  255 (596)
Q Consensus       177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~~~g~t~L~~A  255 (596)
                      +..|.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |++++.  .+..|.||||+|
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~--~d~~g~tpL~~A  147 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ--QNKLGDTALHAA  147 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC--CCTTSCCHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc--cCCCCCCHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999998 999887  568899999999


Q ss_pred             HHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCC
Q psy904          256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRK  314 (596)
Q Consensus       256 ~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g  314 (596)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++.|+..|++.+..+..+
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            99999999999999999999999999999999999999999999999999887776544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=188.88  Aligned_cols=141  Identities=24%  Similarity=0.178  Sum_probs=124.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccc-----cccCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccccCCCChHH
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQ-----IETNRNTALTLACFQ---GRHEVVSLLLDRKANVEHRAKTGLTPL  217 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~-----~~~~~~t~L~~A~~~---~~~~ii~~Ll~~g~~~~~~~~~g~t~L  217 (596)
                      ..++|+.|+..|+.+.+.+|+..|++++..     .+..|.||||+|+..   ++.+++++|+++|++++..+..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            447899999999999999999999998874     367889999999997   899999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904          218 MEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       218 ~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~  294 (596)
                      |+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~--~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGT--VNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSC--CCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            999999999999999999999987  668899999999999999999999999876      488999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=4.9e-21  Score=165.29  Aligned_cols=118  Identities=31%  Similarity=0.334  Sum_probs=105.9

Q ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHH
Q psy904          177 ETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAA  256 (596)
Q Consensus       177 ~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~  256 (596)
                      +..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA--PDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC--CCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCCCCHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999887  5678999999999


Q ss_pred             HcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHH
Q psy904          257 DKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSV  296 (596)
Q Consensus       257 ~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~i  296 (596)
                      ..++.+++++|+++|++++..|..|.||||+|+..+..++
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            9999999999999999999999999999999965444444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=4.9e-20  Score=182.73  Aligned_cols=125  Identities=18%  Similarity=0.161  Sum_probs=114.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCc------ccccCCCChHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcH
Q psy904          181 NTALTLACFQGRHEVVSLLLDRKANV------EHRAKTGLTPLMEAASG---GYVEVGRVLLDKGADVNAPPVPSSRDTA  251 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~------~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~g~t~  251 (596)
                      .++|+.|+..++.+.+..++..|+++      +..+..|.||||+|+..   |+.+++++|+++|++++.  .+..|.||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~--~d~~g~Tp  208 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK--QTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC--CCTTCCCH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc--cCCCCCCH
Confidence            36888899999999999899888884      44478899999999999   899999999999999987  56789999


Q ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCc
Q psy904          252 LTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI  307 (596)
Q Consensus       252 L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  307 (596)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999998864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.6e-20  Score=153.43  Aligned_cols=93  Identities=42%  Similarity=0.643  Sum_probs=81.7

Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCC
Q psy904          247 SRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH  326 (596)
Q Consensus       247 ~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~  326 (596)
                      +|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36789999999999999999999999999999899999999999999999999999999999889899999999999999


Q ss_pred             HHHHHHHHhCcCC
Q psy904          327 VKAVRWMVNHVAQ  339 (596)
Q Consensus       327 ~~iv~~Ll~~~~~  339 (596)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999988864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=4.1e-20  Score=189.86  Aligned_cols=130  Identities=25%  Similarity=0.235  Sum_probs=118.4

Q ss_pred             cCCCChHHHHHHhc-CcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy904          210 AKTGLTPLMEAASG-GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA  288 (596)
Q Consensus       210 ~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A  288 (596)
                      ...+.|+||.|+.. |+++++++|+..|++++....+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34556899999999 99999999999999998855447899999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCC
Q psy904          289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQ  339 (596)
Q Consensus       289 ~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~  339 (596)
                      +..|+.++|++|+++|++++..|..|.|||++|+..|+.+++++|+..+..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999988753

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=7.6e-20  Score=187.83  Aligned_cols=144  Identities=23%  Similarity=0.256  Sum_probs=118.3

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHhcCCCccccc--CCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHH
Q psy904          179 NRNTALTLACFQ-GRHEVVSLLLDRKANVEHRA--KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIA  255 (596)
Q Consensus       179 ~~~t~L~~A~~~-~~~~ii~~Ll~~g~~~~~~~--~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A  255 (596)
                      .+.|+||.|+.. ++++++.+|+..|++++..+  ..|.||||+|+..|+.+++++|+++|++++.  .+..|.||||+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~--~d~~G~TpLh~A  275 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ--ADSAGRGPLHHA  275 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--CCCCCCCHHHHH
Confidence            445899999999 99999999999999999988  8999999999999999999999999999987  668899999999


Q ss_pred             HHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC---CCcccCCCCCCCHHHHHHHc
Q psy904          256 ADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG---ADIDSQDNRKVSCLMAAFRK  324 (596)
Q Consensus       256 ~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~~~~g~t~L~~A~~~  324 (596)
                      +..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+.+|   ++....+..+.|+++++...
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999876   33445556677887776543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=1.8e-19  Score=147.20  Aligned_cols=93  Identities=51%  Similarity=0.710  Sum_probs=85.3

Q ss_pred             CCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhc
Q psy904          212 TGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANG  291 (596)
Q Consensus       212 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~  291 (596)
                      +|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~--~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            478999999999999999999999998887  567899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHCCCC
Q psy904          292 GHLSVVELLCKHGAD  306 (596)
Q Consensus       292 g~~~iv~~Ll~~gad  306 (596)
                      |+.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           79 GHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHcCCC
Confidence            999999999999985

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=1.4e-19  Score=154.09  Aligned_cols=109  Identities=42%  Similarity=0.601  Sum_probs=95.6

Q ss_pred             cccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHH
Q psy904          208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWL  287 (596)
Q Consensus       208 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~  287 (596)
                      ..|..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..++.+++++|+++|++++..|..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA--RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC--CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC--cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            3577888999999999999999999999988877  55788999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHHHHCCCCcccCCCCCCCHH
Q psy904          288 AANGGHLSVVELLCKHGADIDSQDNRKVSCL  318 (596)
Q Consensus       288 A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L  318 (596)
                      |+..|+.+++++|+++|++++..+..|.||-
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999998888874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=1.2e-18  Score=148.27  Aligned_cols=109  Identities=39%  Similarity=0.533  Sum_probs=92.5

Q ss_pred             ccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHH
Q psy904            6 ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA   85 (596)
Q Consensus         6 ~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A   85 (596)
                      -.|.+|.|+||+||..|+++++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR-SKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCC-CTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCccc-CCCCCCHHHHH
Confidence            35778899999999999999999999999999999999999999999999999999999998887654 45788999999


Q ss_pred             HHCCcHHHHHHHHhCCCCccCCCCCCCcHH
Q psy904           86 CSGGRYEVVELLLTRGANKEHRNVSDYTPL  115 (596)
Q Consensus        86 ~~~g~~eivk~LL~~g~~~~~~d~~g~t~L  115 (596)
                      +..|+.+++++|+++|++++..+..|.+|-
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            999999999999999998888888877663

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=2.2e-17  Score=139.29  Aligned_cols=90  Identities=34%  Similarity=0.497  Sum_probs=81.5

Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904          244 VPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR  323 (596)
Q Consensus       244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~  323 (596)
                      .+..|.|+||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+.
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            55678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHH
Q psy904          324 KGHVKAVRWM  333 (596)
Q Consensus       324 ~g~~~iv~~L  333 (596)
                      .|+.+++++|
T Consensus       100 ~~~~~~~~~L  109 (110)
T 2zgd_A          100 NGNEDLAEIL  109 (110)
T ss_dssp             HTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            9999999886

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=2.5e-16  Score=132.74  Aligned_cols=92  Identities=34%  Similarity=0.482  Sum_probs=82.8

Q ss_pred             ccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHH
Q psy904          207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLW  286 (596)
Q Consensus       207 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~  286 (596)
                      ...+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~--~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA--KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            44577888999999999999999999999998887  5678999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHH
Q psy904          287 LAANGGHLSVVELL  300 (596)
Q Consensus       287 ~A~~~g~~~iv~~L  300 (596)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	596
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-59
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-57
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-45
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-38
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-42
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-31
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-27
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-38
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-37
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-27
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-32
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-29
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-21
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-21
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.004
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-31
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-30
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-25
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-24
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-23
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-24
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-24
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-23
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-23
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-23
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-23
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-21
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-19
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-22
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-21
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-20
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-20
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-20
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-16
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-13
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-13
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	8e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	8e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.002
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	9e-06
d1sa0e_	138	a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	7e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-04
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	4e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  202 bits (513), Expect = 2e-59
 Identities = 111/363 (30%), Positives = 160/363 (44%), Gaps = 38/363 (10%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
             +  +    +T L +A   GH E+ + LL   A +  + K   TPL  AA  GH  +V 
Sbjct: 25  SPN-VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 83

Query: 62  ILLNHKAD--------------------------------MEAQSERTKDTPLSLACSGG 89
           +LL + A+                                 +A   +   TPL +A   G
Sbjct: 84  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYG 143

Query: 90  RYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISP 149
           +  V ELLL R A+      +  TPL +A     ++I+KLLL  G   +S   +  G +P
Sbjct: 144 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP--AWNGYTP 201

Query: 150 LMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHR 209
           L +AA        + LL  G   NA+      T L LA  +G  E+V+LLL ++AN    
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQG-VTPLHLAAQEGHAEMVALLLSKQANGNLG 260

Query: 210 AKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLS 269
            K+GLTPL   A  G+V V  VL+  G  V+A        T L +A+  G+ + V+ LL 
Sbjct: 261 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDAT--TRMGYTPLHVASHYGNIKLVKFLLQ 318

Query: 270 KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKA 329
             A V  K K G SPL  AA  GH  +V LL K+GA  +   +   + L  A R G++  
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 378

Query: 330 VRW 332
              
Sbjct: 379 TDV 381

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  195 bits (496), Expect = 4e-57
 Identities = 120/324 (37%), Positives = 163/324 (50%), Gaps = 6/324 (1%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
           T L +A   GH  +V+ LL RGA     + K  TPL +AA AGH +V   LL +KA + A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
           +++    TPL  A   G   +V+LLL   AN      + +TPL +AA  G+V  +  LL 
Sbjct: 62  KAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
             A     T  K G +PL +AA  G     +LLL+  +  NA    N  T L +A     
Sbjct: 121 KEASQACMT--KKGFTPLHVAAKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNN 177

Query: 193 HEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTAL 252
            ++V LLL R  +    A  G TPL  AA    VEV R LL  G   NA  V     T L
Sbjct: 178 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ--GVTPL 235

Query: 253 TIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN 312
            +AA +GH   V LLLSK A   + NK G +PL L A  GH+ V ++L KHG  +D+   
Sbjct: 236 HLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 295

Query: 313 RKVSCLMAAFRKGHVKAVRWMVNH 336
              + L  A   G++K V++++ H
Sbjct: 296 MGYTPLHVASHYGNIKLVKFLLQH 319

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  163 bits (412), Expect = 3e-45
 Identities = 104/349 (29%), Positives = 154/349 (44%), Gaps = 39/349 (11%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            V+++ + +  T L  A   GH  +V+LLL   A+       G TPL +AA  GH + V 
Sbjct: 58  KVNAKAK-DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
            LL  +A     +++   TPL +A   G+  V ELLL R A+      +  TPL +A   
Sbjct: 117 ALLEKEASQACMTKK-GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH 175

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
             ++I+KLLL  G   +S   +  G +PL +AA        + LL  G   NA+      
Sbjct: 176 NNLDIVKLLLPRGGSPHSP--AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG-V 232

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
           T L LA  +G  E+V+LLL ++AN     K+GLTPL   A  G+V V  VL+  G  V+A
Sbjct: 233 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 292

Query: 242 PP-------------------------------VPSSRDTALTIAADKGHCRFVELLLSK 270
                                                  + L  AA +GH   V LLL  
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 352

Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELL---CKHGADIDSQDNRKVS 316
           GA     +  G +PL +A   G++SV ++L       + +   D  ++S
Sbjct: 353 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (359), Expect = 6e-38
 Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 3/192 (1%)

Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206
           ++PL +A+  GH   VK LL  G+  N        T L +A   G  EV   LL  KA V
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 207 EHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL 266
             +AK   TPL  AA  G+  + ++LL+  A+ N     ++  T L IAA +GH   V  
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN--LATTAGHTPLHIAAREGHVETVLA 117

Query: 267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGH 326
           LL K A      KKG +PL +AA  G + V ELL +  A  ++     ++ L  A    +
Sbjct: 118 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 177

Query: 327 VKAVRWMVNHVA 338
           +  V+ ++    
Sbjct: 178 LDIVKLLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 2e-21
 Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 2/126 (1%)

Query: 214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ 273
           LTPL  A+  G++ + + LL +GA  N        +T L +AA  GH    + LL   A+
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSN--VKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM 333
           V  K K   +PL  AA  GH ++V+LL ++ A+ +       + L  A R+GHV+ V  +
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 334 VNHVAQ 339
           +   A 
Sbjct: 119 LEKEAS 124

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 5e-14
 Identities = 31/142 (21%), Positives = 48/142 (33%), Gaps = 34/142 (23%)

Query: 9   SNHDTALTLACAGGHEELVELLLSRGADI------------------------------- 37
            +  T L L    GH  + ++L+  G  +                               
Sbjct: 262 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA 321

Query: 38  --EHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVE 95
               + K G++PL  AA  GH  +V +LL + A     S     TPL++A   G   V +
Sbjct: 322 DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD-GTTPLAIAKRLGYISVTD 380

Query: 96  LLLTRGANKEHRNVSDYTPLSL 117
           +L           VSD   +S 
Sbjct: 381 VLKVVTDETSFVLVSDKHRMSF 402

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  151 bits (381), Expect = 4e-42
 Identities = 86/311 (27%), Positives = 131/311 (42%), Gaps = 44/311 (14%)

Query: 12  DTALTLACAGGHEELVELLLSRGADIEHRDKK-GFTPLILAATAGHDKVVDILLNHKADM 70
           +  L  A      +LV+ LL  GA++  ++++ G+TPL  A     + +V++LL H AD 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 71  EAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
             + +        LA   G  ++++L L++GA+    +   +T    AA  G V  +K L
Sbjct: 66  VLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 131 LTHGAEINSR--------TGSKLGISPLMLAAMNGHTAAVKLLLD-MGSDINAQIETNRN 181
              GA +N R           K G + LM AA  GH   +K+LLD MG+D+NA     RN
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
             +         +V                                +  +LLD GADVN 
Sbjct: 185 ALIHALLSSDDSDV------------------------------EAITHLLLDHGADVNV 214

Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
                   T L +A +K H   V+ LL +   ++   +  G + L LA       + ELL
Sbjct: 215 R--GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

Query: 301 CKHGADIDSQD 311
           CK GA  D  D
Sbjct: 273 CKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 4e-31
 Identities = 72/254 (28%), Positives = 112/254 (44%), Gaps = 16/254 (6%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           +V+ + E    T L  A     E++VELLL  GAD   R K G TP +LAA AG  K++ 
Sbjct: 30  NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD---------- 111
           + L+  AD+         T    A   G+ + ++ L  RGAN   R  +           
Sbjct: 90  LFLSKGADVNECD-FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 112 YTPLSLAASGGYVNIIKLLLTH-GAEINSRTGSKLGISPLMLAAMN--GHTAAVKLLLDM 168
            T L  AA  G+V ++K+LL   GA++N+            L + +     A   LLLD 
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVE 227
           G+D+N +      T L LA  +    +V  LL+++   +      G T L+ A      +
Sbjct: 209 GADVNVR-GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK 267

Query: 228 VGRVLLDKGADVNA 241
           +  +L  +GA  + 
Sbjct: 268 IAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 8e-27
 Identities = 68/241 (28%), Positives = 108/241 (44%), Gaps = 15/241 (6%)

Query: 109 VSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168
           V D   L  A     V++++ LL  GA +N +   + G +PL  A        V+LLL  
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
           G+D   + +        LA   G  +++ L L + A+V      G T  MEAA  G V+ 
Sbjct: 62  GADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 229 GRVLLDKGADVNAPPVPSSRD--------TALTIAADKGHCRFVELLLSK-GAQVEVKNK 279
            + L  +GA+VN                 TAL  AA+KGH   +++LL + GA V   + 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 280 KGNSPLWLA----ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN 335
            G + L  A     +    ++  LL  HGAD++ +  R  + L+ A  K H+  V+ ++ 
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240

Query: 336 H 336
            
Sbjct: 241 Q 241

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 2e-23
 Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 1   MDVDSETESNHDTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHD-- 57
            +          TAL  A   GH E++++LL   GAD+   D  G   LI A  +  D  
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD 197

Query: 58  --KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTP 114
              +  +LL+H AD+  + ER K TPL LA       +V+ LL +        +    T 
Sbjct: 198 VEAITHLLLDHGADVNVRGERGK-TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA 256

Query: 115 LSLAASGGYVNIIKLLLTHGAEINSR 140
           L LA       I +LL   GA  +  
Sbjct: 257 LLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 1e-20
 Identities = 62/207 (29%), Positives = 94/207 (45%), Gaps = 13/207 (6%)

Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
             L+ A  N     V+ LL+ G+++N Q E    T L  A    R ++V LLL   A+  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
            R K G TP + AA  G V++ ++ L KGADVN         TA   AA  G  + ++ L
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY--GFTAFMEAAVYGKVKALKFL 124

Query: 268 LSKGA----------QVEVKNKKGNSPLWLAANGGHLSVVELLCKH-GADIDSQDNRKVS 316
             +GA            E   K G + L  AA  GH+ V+++L    GAD+++ DN   +
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 317 CLMAAFRKGHVKAVRWMVNHVAQFPSD 343
            L+ A        V  + + +    +D
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGAD 211

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 4e-17
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 23  HEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK-ADMEAQSERTKDTP 81
            E +  LLL  GAD+  R ++G TPLILA    H  +V  LL  +  ++         T 
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD-GKTA 256

Query: 82  LSLACSGGRYEVVELLLTRGANKEHRNV 109
           L LA      ++ ELL  RGA+ +  ++
Sbjct: 257 LLLAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 5e-12
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 1/141 (0%)

Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQV 274
             L++A     V++ + LL+ GA+VN         T L  A        VELLL  GA  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADP 65

Query: 275 EVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
            ++ K G +P  LAA  G + +++L    GAD++  D    +  M A   G VKA++++ 
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY 125

Query: 335 NHVAQFPSDQEMTRYIQTVND 355
              A     ++     + +  
Sbjct: 126 KRGANVNLRRKTKEDQERLRK 146

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 2e-08
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 280 KGNSPLWLAANGGHLSVVELLCKHGADIDSQDNR-KVSCLMAAFRKGHVKAVRWMVNHVA 338
           + N  L  A     + +V+ L + GA+++ Q+     + L  A +      V  ++ H A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 339 QFPSDQEMTRYIQ 351
                ++      
Sbjct: 64  DPVLRKKNGATPF 76

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 7e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRD 41
           +T+S+  TAL LA     +++ ELL  RGA  +  D
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  141 bits (357), Expect = 4e-38
 Identities = 52/346 (15%), Positives = 96/346 (27%), Gaps = 40/346 (11%)

Query: 12  DTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
           D  L L      E L +  +S     +     K    + L  T   ++V  +L  + A  
Sbjct: 13  DPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHY 72

Query: 71  EAQSERTK----------DTPLSLACSGGRYEVVE---LLLTRGANKEHRNVSDYTPLSL 117
              +++            +    +A   G    ++   LLLT     +     +Y    L
Sbjct: 73  NRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL 132

Query: 118 AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIE 177
           AA  G+++++  L                     LAA NGH   +  L ++       + 
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 178 TNRN--TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
              N       A  +G H V++ LLD    +           +     G   V   +   
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFIARH 245

Query: 236 GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLS 295
              +           A  ++   G    V           ++       L    +   L 
Sbjct: 246 VNRLK------EMHDAFKLSNPDGVFDLVT------KSECLQGFYMLRNLIRRNDEVLLD 293

Query: 296 VVELLCKHGAD-----IDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
            +  L             +        L  A R G+  A   +++ 
Sbjct: 294 DIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  138 bits (349), Expect = 5e-37
 Identities = 46/314 (14%), Positives = 81/314 (25%), Gaps = 43/314 (13%)

Query: 13  TALTLACAGGHEELVELLLSRGA-----------DIEHRDKKGFTPLILAATAGHDKVVD 61
             + L      E++ +LL    A           D   +  K      +AA  G    +D
Sbjct: 48  IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD 107

Query: 62  I---LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVS--DYTPLS 116
               LL     ++            LA   G   V+  L      +    +   +Y    
Sbjct: 108 TLCLLLTSDEIVKVIQAE-NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 166

Query: 117 LAASGGYVNIIKLLLTHGAEINSR-TGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ 175
           LAA  G+++++  L        +    ++   +    A   GH   +  LLD    +   
Sbjct: 167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-- 224

Query: 176 IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK 235
                  A       G   V   +      ++            +   G  ++       
Sbjct: 225 ------YAEIHEFEYGEKYVNPFIARHVNRLKE----MHDAFKLSNPDGVFDL------- 267

Query: 236 GADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNK-----KGNSPLWLAAN 290
               +           L    D+     +  LLS      +          N  L LA  
Sbjct: 268 -VTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 326

Query: 291 GGHLSVVELLCKHG 304
            G+     LL    
Sbjct: 327 LGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  110 bits (276), Expect = 3e-27
 Identities = 40/269 (14%), Positives = 70/269 (26%), Gaps = 56/269 (20%)

Query: 6   ETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKK--GFTPLILAATAGHDKVVDIL 63
             ++ +  A  LA   GH  ++  L            +   +    LAA  GH  V++ L
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

Query: 64  LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
                                                 A    +  + Y     A   G+
Sbjct: 181 CELAPTE-------------------------------ATAMIQAENYYAFRWAAVGRGH 209

Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTA 183
            N+I  LL     +             +     G       +    + +        + A
Sbjct: 210 HNVINFLLDCPVMLA---------YAEIHEFEYGEKYVNPFIARHVNRLK-----EMHDA 255

Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPP 243
             L+   G  ++V        +   +    L  L+       ++  R LL         P
Sbjct: 256 FKLSNPDGVFDLV------TKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 244 V---PSSRDTALTIAADKGHCRFVELLLS 269
               P   +  L +A   G+     LLLS
Sbjct: 310 TATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 59.9 bits (144), Expect = 2e-10
 Identities = 15/105 (14%), Positives = 27/105 (25%), Gaps = 14/105 (13%)

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEV-----------KNKKGNSPLWLAANGGHLSVVE 298
             + +   K   +  +LL    A               K  K     ++AA  G  S ++
Sbjct: 48  IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD 107

Query: 299 ---LLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF 340
              LL      +             A   GH+  +  +       
Sbjct: 108 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 5e-32
 Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 5/220 (2%)

Query: 15  LTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS 74
             LA +G  EEL E +L+  +     D+   T L  A +AGH ++V+  L          
Sbjct: 8   CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF-LLQLGVPVNDK 66

Query: 75  ERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHG 134
           +    +PL +A S GR E+V+ LL +GA     N +  TPL  AAS     I  +LL  G
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 135 AEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHE 194
           A  +++       + +  AA  G+   + +LL   +  N Q +T  NT L LAC + R E
Sbjct: 127 ANPDAKD--HYEATAMHRAAAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLACDEERVE 183

Query: 195 VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
              LL+ + A++    K   TPL   A GG   + + +++
Sbjct: 184 EAKLLVSQGASIYIENKEEKTPLQ-VAKGGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 1e-29
 Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 6/226 (2%)

Query: 109 VSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168
           VS+    +LA SG    + + +L   +        +   + L  A   GHT  V+ L   
Sbjct: 2   VSNLMVCNLAYSGKLEELKESILADKSLATRTD--QDSRTALHWACSAGHTEIVEFL-LQ 58

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
                   +    + L +A   GR E+V  LL + A V    + G TPL  AAS    E+
Sbjct: 59  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 118

Query: 229 GRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLA 288
             +LL+ GA+ +A        TA+  AA KG+ + + +LL   A   +++ +GN+PL LA
Sbjct: 119 AVMLLEGGANPDAKD--HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 176

Query: 289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
            +   +   +LL   GA I  ++  + + L  A + G    ++ MV
Sbjct: 177 CDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (226), Expect = 1e-21
 Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 6/195 (3%)

Query: 147 ISPLML--AAMNGHTAAVK-LLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK 203
           +S LM+   A +G    +K  +L   S      + +R TAL  AC  G  E+V  LL   
Sbjct: 2   VSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSR-TALHWACSAGHTEIVEFLLQLG 60

Query: 204 ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF 263
             V  +   G +PL  AAS G  E+ + LL KGA VNA  V  +  T L  AA K     
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA--VNQNGCTPLHYAASKNRHEI 118

Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
             +LL  GA  + K+    + +  AA  G+L ++ +L  + A  + QD    + L  A  
Sbjct: 119 AVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACD 178

Query: 324 KGHVKAVRWMVNHVA 338
           +  V+  + +V+  A
Sbjct: 179 EERVEEAKLLVSQGA 193

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 5e-21
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 4/158 (2%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
              + L +A + G +E+V+ LL +GA +   ++ G TPL  AA+    ++  +LL   A+
Sbjct: 69  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 128

Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL 129
            +A+    + T +  A + G  +++ +LL   A+   ++    TPL LA     V   KL
Sbjct: 129 PDAKDHY-EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL 187

Query: 130 LLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
           L++ GA I      K   +PL +A   G    +K +++
Sbjct: 188 LVSQGASIYIEN--KEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 2e-20
 Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 5/200 (2%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
            + + T+ +  TAL  AC+ GH E+VE LL  G  +  +D  G++PL +AA+AG D++V 
Sbjct: 28  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVK 87

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
            LL   A + A ++    TPL  A S  R+E+  +LL  GAN + ++  + T +  AA+ 
Sbjct: 88  ALLGKGAQVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 146

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
           G + +I +LL + A  N +     G +PL LA         KLL+  G+ I  +      
Sbjct: 147 GNLKMIHILLYYKASTNIQD--TEGNTPLHLACDEERVEEAKLLVSQGASIYIE-NKEEK 203

Query: 182 TALTLACFQGRHEVVSLLLD 201
           T L +A   G   ++  +++
Sbjct: 204 TPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 10/65 (15%), Positives = 20/65 (30%)

Query: 285 LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQ 344
             LA +G    + E +    +     D    + L  A   GH + V +++          
Sbjct: 8   CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 67

Query: 345 EMTRY 349
           +    
Sbjct: 68  DAGWS 72

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (298), Expect = 5e-31
 Identities = 65/272 (23%), Positives = 86/272 (31%), Gaps = 25/272 (9%)

Query: 39  HRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKD--TPLSLACSGGRYEVVEL 96
           +  + G T L LA    H+  +D LL   A  E    +     T L LA   G    VE 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 97  LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMN 156
           L   GA         +T L LA          +LL                         
Sbjct: 64  LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 157 GHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP 216
            H  A                         +     +E      D +  +E     G TP
Sbjct: 124 SHAPA----------------------AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
           L  A      E+ R+L D GAD+N P     R T L +A +      +ELLL  GA    
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR-TPLHLAVEAQAASVLELLLKAGADPTA 220

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADID 308
           +   G +PL  A    +  +  LL  HGA   
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (290), Expect = 6e-30
 Identities = 59/246 (23%), Positives = 85/246 (34%), Gaps = 20/246 (8%)

Query: 12  DTALTLACAGGHEELVELLLSRGADIEH---RDKKGFTPLILAATAGHDKVVDILLNHKA 68
           DTAL LA    HE  ++ LL   A  E+   ++  G T L LAA  G    V+ L    A
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 69  DMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKE--------------HRNVSDYTP 114
            +             LAC    +    +LL    +                  + S    
Sbjct: 70  GVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 115 LSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINA 174
              +                 ++ +      G +PL +A ++     V+LL D G+D+N 
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYD--GHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 175 QIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD 234
              T   T L LA       V+ LLL   A+   R   G TPL  A       + R+L  
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 235 KGADVN 240
            GA   
Sbjct: 247 HGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (253), Expect = 6e-25
 Identities = 50/247 (20%), Positives = 78/247 (31%), Gaps = 17/247 (6%)

Query: 112 YTPLSLAASGGYVNIIKLLLTHGAEINSR-TGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
            T L LA    +   +  LL   A        + LG + L LAA+ G  + V+ L   G+
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTP-------------- 216
            +             LAC    H    +LL  + +    A                    
Sbjct: 70  GVLVAERGGHTAL-HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

Query: 217 LMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEV 276
            +++      E      D    + A                K       L  +     + 
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAEN-YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           +   G +PL LA      SV+ELL K GAD  ++     + L +A  + +    R +  H
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

Query: 337 VAQFPSD 343
            A  P D
Sbjct: 248 GAPEPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.4 bits (189), Expect = 2e-16
 Identities = 36/132 (27%), Positives = 52/132 (39%)

Query: 4   DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDIL 63
           D   +++H  A   +      E           +E  +  G TPL +A      ++V +L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

Query: 64  LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
            +  AD+         TPL LA       V+ELLL  GA+   R     TPL  A     
Sbjct: 178 RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237

Query: 124 VNIIKLLLTHGA 135
             + +LL  HGA
Sbjct: 238 PILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (155), Expect = 4e-12
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
              T L LA       ++ELLL  GAD   R   G TPL  A    +  +  +L  H A 
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (145), Expect = 9e-11
 Identities = 27/195 (13%), Positives = 47/195 (24%), Gaps = 19/195 (9%)

Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH---RAKTGLTPLMEAASGGYVEV 228
           +   +  + +TAL LA        +  LL   A  E+   +   G T L  AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 229 GRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSP---- 284
              L   GA V              +A          +LL                    
Sbjct: 61  VEKLYAAGAGVLVAERGGHTAL--HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 285 ----------LWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV 334
                        +                  +++++    + L  A      + VR + 
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR 178

Query: 335 NHVAQFPSDQEMTRY 349
           +  A     +     
Sbjct: 179 DAGADLNKPEPTCGR 193

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 249 DTALTIAADKGHCRFVELLLSKGA---QVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
           DTAL +A    H  F++ LL   A    ++++N  G + L LAA  G  S VE L   GA
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 306 DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVN 354
            +   +    + L  A R         ++      P D   T   Q+ +
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (123), Expect = 5e-08
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 277 KNKKGNSPLWLAANGGHLSVVELLCKHGAD---IDSQDNRKVSCLMAAFRKGHVKAVRWM 333
             + G++ L LA    H   ++ L    A    +D Q++   + L  A   G    V  +
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 334 VNHVAQFPSDQEMTRYIQ 351
               A     +       
Sbjct: 65  YAAGAGVLVAERGGHTAL 82

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 8/28 (28%), Positives = 10/28 (35%)

Query: 9   SNHDTALTLACAGGHEELVELLLSRGAD 36
               T L  A    +  L  LL + GA 
Sbjct: 223 YGGRTPLGSALLRPNPILARLLRAHGAP 250

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  101 bits (251), Expect = 1e-24
 Identities = 50/303 (16%), Positives = 97/303 (32%), Gaps = 40/303 (13%)

Query: 12  DTALTLAC-AGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
           ++ + L   A G   + E +     +I    +   T L   A+    +  + L+ H+A  
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 71  EAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLL 130
                                      +  GA+    +  + TPL LA       ++  L
Sbjct: 60  --------------------------CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 93

Query: 131 LTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQ 190
           +  GA+      S+        A  +       L          +++ N  TAL +    
Sbjct: 94  MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 153

Query: 191 GRH-----------EVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
                         +   +  D  A  +     G T L  AA    + + + L+ +    
Sbjct: 154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 213

Query: 240 NAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
                     T + +AA +G    V  L+ +GA VE  +   ++   LA    H ++V++
Sbjct: 214 K-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDI 272

Query: 300 LCK 302
             +
Sbjct: 273 FDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 96.3 bits (238), Expect = 8e-23
 Identities = 55/275 (20%), Positives = 97/275 (35%), Gaps = 26/275 (9%)

Query: 79  DTPLSLAC-SGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH---- 133
           ++P+ L   + G Y + E +     N       + T L   AS       + L+ H    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 134 ----GAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF 189
               GA++N+        +PLMLA +      V  L             +  +AL  A  
Sbjct: 60  CIAAGADVNAMD--CDENTPLMLAVLARRRRLVAYL-MKAGADPTIYNKSERSALHQAAA 116

Query: 190 QGRHEVVSLLLDRKANVEHRAKTGLTPLME----AASGGYVEVGRVLLDKGADVNAPPVP 245
                ++  +L+         +     +      A + G  +V    L            
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 246 SSR--------DTALTIAADKGHCRFVELLLS-KGAQVEVKNKKGNSPLWLAANGGHLSV 296
           ++R         TAL  AA   +   V+ L+  KG+  + +++ G +P+ LAA  G + V
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 297 VELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
           V  L + GA +++ D    +    A    H   V 
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 271

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 92.1 bits (227), Expect = 2e-21
 Identities = 51/252 (20%), Positives = 93/252 (36%), Gaps = 21/252 (8%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLL--------SRGADIEHRDKKGFTPLILAAT 53
            V+     ++ T L    +    E  E L+        + GAD+   D    TPL+LA  
Sbjct: 24  SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL 83

Query: 54  AGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYT 113
           A   ++V   L           +++ + L  A +   + ++  +L     K      D  
Sbjct: 84  ARRRRLVAY-LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 142

Query: 114 P------LSLAASGGYVNIIKLLLTHGAEINSRTGSKL------GISPLMLAAMNGHTAA 161
                  ++       V   KLL+  GA+++    ++       G + L  AA   +   
Sbjct: 143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 202

Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAA 221
           VK L+        + + +  T + LA  +GR EVV  L+ + A+VE    T  T    A 
Sbjct: 203 VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 262

Query: 222 SGGYVEVGRVLL 233
           +  +  +  +  
Sbjct: 263 ANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 53.6 bits (127), Expect = 2e-08
 Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 12/146 (8%)

Query: 215 TPLM-EAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL----- 268
           +P+     + G   +   +  +  ++  P       T L   A        E L+     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDP---RHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 269 ---SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKG 325
              + GA V   +   N+PL LA       +V  L K GAD    +  + S L  A    
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 326 HVKAVRWMVNHVAQFPSDQEMTRYIQ 351
               + +M+N        +E+ R   
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGM 144

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 3e-24
 Identities = 34/266 (12%), Positives = 84/266 (31%), Gaps = 20/266 (7%)

Query: 75  ERTK-DTPLSLACSGGRYEVVELLLTRGANKEHRNV-SDYTPLSLAASGGYVNIIKLLLT 132
           ++ K +  L         E+   L    +N+      S+     ++       +      
Sbjct: 35  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 94

Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGR 192
               +N       G +PL       +   VK L+  GS+         +  +        
Sbjct: 95  TQLNLNIPVDEH-GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 153

Query: 193 HEV------VSLLLDRKANVEHRAKTGLTPLMEAASGG--------YVEVGRVLLDKGAD 238
           ++       +  L       +   +T L  ++  +           Y+++    + K  +
Sbjct: 154 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN 213

Query: 239 VNAPPVPSSRDTALTIAADKGHCRFVELLLSK---GAQVEVKNKKGNSPLWLAANGGHLS 295
                  + +++       +     +E L  K      +  ++  G++ L +AA  G++S
Sbjct: 214 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 273

Query: 296 VVELLCKHGADIDSQDNRKVSCLMAA 321
           +V+ L  +GAD    +   +  +   
Sbjct: 274 IVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.7 bits (247), Expect = 9e-24
 Identities = 43/282 (15%), Positives = 86/282 (30%), Gaps = 20/282 (7%)

Query: 26  LVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLA 85
           +++ L S   +   +  K    L         ++   L N  ++  ++   +      ++
Sbjct: 21  IMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVS 80

Query: 86  CSGGRYEVVELLLTRGANKEHRNVSD-YTPLSLAASGGYVNIIKLLLTHGAEINS----- 139
                 EV +       N          TPL    S   + ++K L+ HG+         
Sbjct: 81  FDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG 140

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVS-- 197
            +     +  +         A +  L       ++   T  +  +  +   G        
Sbjct: 141 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 200

Query: 198 -------LLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDK---GADVNAPPVPSS 247
                  ++  +   ++       +   +        +   L  K      +NA    S+
Sbjct: 201 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA--QDSN 258

Query: 248 RDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAA 289
            DT L IAA  G+   V+ LL  GA   + NK G  P+   A
Sbjct: 259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 99.7 bits (247), Expect = 1e-23
 Identities = 37/239 (15%), Positives = 86/239 (35%), Gaps = 21/239 (8%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHR-DKKGFTPLILAATAGHDKVV 60
           + +SE  S++     ++     +E+ +   +   ++    D+ G TPL    +  + ++V
Sbjct: 64  NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELV 123

Query: 61  DILLNHKADMEAQSERTKDTPLSLACSGGRYEV------VELLLTRGANKEHRNVSDYTP 114
             L+ H ++        +   +    S   Y+       ++ L      ++  N +    
Sbjct: 124 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH 183

Query: 115 LSLAASGGYVNII---------KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           + + +     +             ++          G+    S           + ++ L
Sbjct: 184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS-GTNEKESKPNDKNGERKDSILENL 242

Query: 166 L---DMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAA 221
                + + +NAQ ++N +T L +A   G   +V  LLD  A+     K+GL P+   A
Sbjct: 243 DLKWIIANMLNAQ-DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.0 bits (240), Expect = 9e-23
 Identities = 40/271 (14%), Positives = 88/271 (32%), Gaps = 20/271 (7%)

Query: 4   DSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKK-GFTPLILAATAGHDKVVDI 62
           D+E +   +  L        +E+   L +  ++              ++  +   +V D 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 63  LLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG- 121
             N + ++    +   +TPL    S    E+V+ L+  G+N+ + +    + L  A    
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 151

Query: 122 ------GYVNIIKLLLTHGAEINSRTGSKL-------GISPLMLAAMNGHTAAVKLLLDM 168
                  +  ++  L       +S   + L       G++    AA       +  ++  
Sbjct: 152 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 211

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDR---KANVEHRAKTGLTPLMEAASGGY 225
            +         + +       + +  ++  L  +      +  +   G T L  AA  G 
Sbjct: 212 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

Query: 226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAA 256
           + +   LLD GAD        S    +   A
Sbjct: 272 ISIVDALLDYGADPFIA--NKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 2e-17
 Identities = 38/264 (14%), Positives = 89/264 (33%), Gaps = 19/264 (7%)

Query: 93  VVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLML 152
           +++ L +   N   + +     L          +   L    +  NS  GS        +
Sbjct: 21  IMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSS-NQQQQHV 79

Query: 153 AAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT 212
           +  +          +   ++N  ++ + NT L         E+V  L+   +N  +    
Sbjct: 80  SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNM 139

Query: 213 GLTPLMEAASG-------GYVEVGRVLLDKGADVNA-------PPVPSSRDTALTIAADK 258
           G + L++A           +  +   L       ++         + +S  T  + AA  
Sbjct: 140 GESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY 199

Query: 259 GHCRFVELLLSKGAQ-VEVKNKKGNSPLWLAANGGHLSVVELLCKH---GADIDSQDNRK 314
                +  ++ K  + ++    +  S           S++E L         +++QD+  
Sbjct: 200 YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG 259

Query: 315 VSCLMAAFRKGHVKAVRWMVNHVA 338
            +CL  A R G++  V  ++++ A
Sbjct: 260 DTCLNIAARLGNISIVDALLDYGA 283

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 98.6 bits (244), Expect = 2e-23
 Identities = 63/256 (24%), Positives = 99/256 (38%), Gaps = 12/256 (4%)

Query: 12  DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
                 AC+ G  E V  LL RGADI + +  G T L  A    +   +   L       
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN-VDMVKFLVENGANI 99

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
            Q +     PL  A S G  ++ E L+++GA+    N    TPL +A       +++  +
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159

Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQG 191
                        + I               +  L+ G   + +   +  TAL +A  +G
Sbjct: 160 NRQG---------VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210

Query: 192 RHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTA 251
             EV+ LL+  + +V  +   G TPL  AA  G  E  R+L++   D+ A  V     TA
Sbjct: 211 YTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA--VNKVGQTA 268

Query: 252 LTIAADKGHCRFVELL 267
             +A +       EL 
Sbjct: 269 FDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 85.9 bits (211), Expect = 4e-19
 Identities = 54/243 (22%), Positives = 92/243 (37%), Gaps = 11/243 (4%)

Query: 79  DTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN 138
                 ACS G  E V  LL RGA+  + NV   T L  A     V+++K L+ +GA IN
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100

Query: 139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSL 198
                     PL  AA  G+    + L+  G+ + A                    + + 
Sbjct: 101 QPDNEG--WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

Query: 199 LLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK 258
           +  +  ++E   K     ++  A           +                TAL +AA K
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS---------GGTALHVAAAK 209

Query: 259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCL 318
           G+   ++LL+     V +K+  G +PL  AA+ G      +L ++  D+++ +    +  
Sbjct: 210 GYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269

Query: 319 MAA 321
             A
Sbjct: 270 DVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.7 bits (169), Expect = 9e-14
 Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 11/228 (4%)

Query: 111 DYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
           D      A S G    +  LL  GA+IN       G++ L  A ++ +   +   L    
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYAN--VDGLTALHQACIDDNVD-MVKFLVENG 96

Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGR 230
               Q +      L  A   G  ++   L+ + A+V      G TPL  A      E+ +
Sbjct: 97  ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

Query: 231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAAN 290
             +++                             + L S         K G + L +AA 
Sbjct: 157 NEVNRQGVDIEAARKE--------EERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208

Query: 291 GGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
            G+  V++LL +   D++ +D    + L AA   G  +A R +V ++ 
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.7 bits (148), Expect = 5e-11
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 1   MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVV 60
              D     +  TAL +A A G+ E+++LL+    D+  +D  G+TPL  AA  G ++  
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 61  DILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELL 97
            IL+ +  DMEA ++  + T   +A       + EL 
Sbjct: 249 RILVENLCDMEAVNKVGQ-TAFDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 25/128 (19%), Positives = 51/128 (39%)

Query: 240 NAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
               V          A   G    V  LL +GA +   N  G + L  A    ++ +V+ 
Sbjct: 32  KKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

Query: 300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELL 359
           L ++GA+I+  DN     L AA   G++    ++++  A   +          + ++E +
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM 151

Query: 360 DKCQECSM 367
           ++  +  +
Sbjct: 152 EELLQNEV 159

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 26/159 (16%), Positives = 54/159 (33%)

Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF 340
             +    A + G    V  L + GADI+  +   ++ L  A    +V  V+++V + A  
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 341 PSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREES 400
                                  E  +             +   +I  EE   E  + E 
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV 159

Query: 401 KRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKN 439
            R     +  RK+++++  ++ ++         +R AK+
Sbjct: 160 NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.3 bits (235), Expect = 8e-23
 Identities = 63/228 (27%), Positives = 99/228 (43%), Gaps = 12/228 (5%)

Query: 112 YTPLSLAASGGYVNIIKLLLT----HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
            TPL +A   G +  +  L+      G E++      L  +PL LA +    + V+LL+ 
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN--NLRQTPLHLAVITTLPSVVRLLVT 61

Query: 168 MGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKT----GLTPLMEAASG 223
            G+   A     +  A   AC       +  LLD  A      +     GLT L  A + 
Sbjct: 62  AGASPMALDRHGQTAAHL-ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 120

Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
              E  ++LL++GAD++A  + S R   L  A +      V+LLL  GA V  +   G+S
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSP-LIHAVENNSLSMVQLLLQHGANVNAQMYSGSS 179

Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVR 331
            L  A+  G L +V  L + GAD   ++    + LM A  +  +  +R
Sbjct: 180 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (226), Expect = 1e-21
 Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 11/225 (4%)

Query: 12  DTALTLACAGGHEELVELLLS----RGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
           DT L +A   G+   V  L++     G +++  +    TPL L A       V  LL   
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL-AVITTLPSVVRLLVTA 62

Query: 68  ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSD----YTPLSLAASGGY 123
                  +R   T   LAC       +  LL   A       +      T L +A +   
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 124 VNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTA 183
              ++LLL  GA+I++      G SPL+ A  N   + V+LLL  G+++N     + ++A
Sbjct: 123 QETVQLLLERGADIDAVDIKS-GRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSA 180

Query: 184 LTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEV 228
           L  A  +G   +V  L+   A+   +     TPLM A S   +++
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (205), Expect = 7e-19
 Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 44  GFTPLILAATAGHDKVVDILLN----HKADMEAQSERTKDTPLSLACSGGRYEVVELLLT 99
           G TPL +A   G+   V  L+N       +++  +   + TPL LA       VV LL+T
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRLLVT 61

Query: 100 RGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGA--EINSRTGSKLGISPLMLAAMNG 157
            GA+    +    T   LA        ++ LL   A   ++    +  G++ L +A    
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 158 HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPL 217
               V+LLL+ G+DI+A    +  + L  A       +V LLL   ANV  +  +G + L
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL 181

Query: 218 MEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH 260
             A+  G + + R L+  GAD +        DT L +A  +  
Sbjct: 182 HSASGRGLLPLVRTLVRSGADSSL--KNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 5e-14
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 18  ACAGGHEELVELLLSRGADIEHRDK----KGFTPLILAATAGHDKVVDILLNHKADMEAQ 73
           AC       +  LL   A      +     G T L +A      + V +LL   AD++A 
Sbjct: 80  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 139

Query: 74  SERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH 133
             ++  +PL  A       +V+LLL  GAN   +  S  + L  A+  G + +++ L+  
Sbjct: 140 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 199

Query: 134 GAEINSRTGSKLGISPLMLAAMNGHTAAVK 163
           GA+ + +       +PLM+A        ++
Sbjct: 200 GADSSLKN--CHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 2e-11
 Identities = 33/119 (27%), Positives = 54/119 (45%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
           +  TAL +A     +E V+LLL RGADI+  D K     ++ A   +   +  LL     
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 168

Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIK 128
                  +  + L  A   G   +V  L+  GA+   +N  + TPL +A S   ++I++
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 5e-09
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           D+D+    +  + L  A       +V+LLL  GA++  +   G + L  A+  G   +V 
Sbjct: 135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 194

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVV 94
            L+   AD   ++    DTPL +A S    +++
Sbjct: 195 TLVRSGADSSLKNCH-NDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 249 DTALTIAADKGHCRFVELLLS----KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
           DT L IA  +G+   V  L++     G ++++ N    +PL LA      SVV LL   G
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRY 349
           A   + D    +    A        +R +++  A    D E   Y
Sbjct: 64  ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 108

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 94.1 bits (232), Expect = 1e-22
 Identities = 60/209 (28%), Positives = 92/209 (44%), Gaps = 4/209 (1%)

Query: 25  ELVELLLSRGADIEHR-DKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLS 83
           +++  LL++GA++    DK G T L LAA          LL+  AD  +Q    +    +
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 84  LACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGS 143
              +        LL  R  N   R     TPL LAA      +++ L+T  A+IN+    
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD-- 120

Query: 144 KLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK 203
             G + L  AA   +T AV +LL   ++ +AQ +    T L LA  +G +E    LLD  
Sbjct: 121 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNF 179

Query: 204 ANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
           AN E        P   A+   + ++ R+L
Sbjct: 180 ANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 89.5 bits (220), Expect = 5e-21
 Identities = 64/206 (31%), Positives = 90/206 (43%), Gaps = 3/206 (1%)

Query: 126 IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALT 185
           +I  LL  GAE+N+    K G + L LAA      A K LLD G+D N+Q  T R     
Sbjct: 4   VISDLLAQGAELNATMD-KTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 186 LACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVP 245
                       LL +R  N+  R   G TPL+ AA      +   L+   AD+NA    
Sbjct: 63  AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA--AD 120

Query: 246 SSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA 305
           +S  TAL  AA   +   V +LL   A  + ++ K  +PL+LAA  G     + L  + A
Sbjct: 121 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA 180

Query: 306 DIDSQDNRKVSCLMAAFRKGHVKAVR 331
           + +  D+        A  + H   VR
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVR 206

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 88.3 bits (217), Expect = 1e-20
 Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 5/210 (2%)

Query: 92  EVVELLLTRGANKEHRNVSD-YTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPL 150
           +V+  LL +GA           T L LAA     +  K LL  GA+ NS+  +       
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA 62

Query: 151 MLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRA 210
                       ++LL   +        +  T L LA       +V  L+   A++    
Sbjct: 63  A--VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAAD 120

Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSK 270
            +G T L  AA+    E   +LL   A+ +A       +T L +AA +G     + LL  
Sbjct: 121 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK--DETPLFLAAREGSYEASKALLDN 178

Query: 271 GAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
            A  E+ +     P  +A+   H  +V LL
Sbjct: 179 FANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.4 bits (168), Expect = 4e-14
 Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 3/198 (1%)

Query: 2   DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVD 61
           ++++  +   +T+L LA      +  + LL  GAD   +D  G TPL  A  A    V  
Sbjct: 14  ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQ 73

Query: 62  ILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASG 121
           ILL ++A           TPL LA       +VE L+T  A+    + S  T L  AA+ 
Sbjct: 74  ILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAV 133

Query: 122 GYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRN 181
                + +LL H A  +++       +PL LAA  G   A K LLD  ++     +    
Sbjct: 134 NNTEAVNILLMHHANRDAQDDKDE--TPLFLAAREGSYEASKALLDNFANREIT-DHMDR 190

Query: 182 TALTLACFQGRHEVVSLL 199
               +A  +  H++V LL
Sbjct: 191 LPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 264 VELLLSKGAQVEVK-NKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF 322
           +  LL++GA++    +K G + L LAA        + L   GAD +SQDN   + L AA 
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 323 RKGHVKAVRWMVNHVAQFPSDQEMTRY 349
               +   + ++ + A   + +     
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGT 91

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.0 bits (216), Expect = 3e-20
 Identities = 51/232 (21%), Positives = 83/232 (35%), Gaps = 8/232 (3%)

Query: 79  DTPLSLACSGGRYEVVELLL-TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEI 137
           + PL  AC    +  V+ LL ++ +    ++     PL  + S     I   LL+    +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 138 NSRTGSKLGISPLMLAAMNGHTAAVKLLLDM--GSDINAQIETNRNTALTLACFQGRHEV 195
           N               A +     V   L          +I     T L LA  +   EV
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 196 VSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIA 255
              L++  A+V  + K    PL  AAS G +++  +L   G             T L  A
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV-NWQDKQGWTPLFHA 179

Query: 256 ADKGHCRFVELLLSK-GAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
             +GH     LL+ K GA+ ++ + KG     +A    +  V +    +  D
Sbjct: 180 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.8 bits (213), Expect = 7e-20
 Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 11/233 (4%)

Query: 12  DTALTLACAGGHEELVELLL-SRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADM 70
           +  L  AC       V+ LL S+ + +  +D+ G  PL  + +    ++   LL+   ++
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 71  EAQSERTKDTPLSLACSGGRYEVVELLLTRGA----NKEHRNVSDYTPLSLAASGGYVNI 126
                           +     +  +          +         T L LA    +  +
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 127 IKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTL 186
            + L+ +GA +  +   K    PL  AA  G    ++LL  +G       +    T L  
Sbjct: 121 SQFLIENGASVRIKD--KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH 178

Query: 187 ACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGAD 238
           A  +G  +   LL+++  A  +     G      A +    +V +  L+   D
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.2 bits (175), Expect = 8e-15
 Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 11/223 (4%)

Query: 113 TPLSLAASGGYVNIIKLLL-THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSD 171
            PL  A        ++ LL +  + +  +   + G  PL  +           LL    +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKD--QDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 172 INAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTG----LTPLMEAASGGYVE 227
           +N     + +             +  +       ++          +T L  A    + E
Sbjct: 60  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

Query: 228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ-VEVKNKKGNSPLW 286
           V + L++ GA V      +     L  AA  G  + +ELL   G   V  ++K+G +PL+
Sbjct: 120 VSQFLIENGASVRIKDKFN--QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 177

Query: 287 LAANGGHLSVVE-LLCKHGADIDSQDNRKVSCLMAAFRKGHVK 328
            A   GH      L+ K+GA+ D  DN+       A  +   K
Sbjct: 178 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKK 220

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 4/127 (3%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
              T L LA      E+ + L+  GA +  +DK    PL  AA+ G  K++++L      
Sbjct: 104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 163

Query: 70  MEAQSERTKDTPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTPLSLAASGGYVNIIK 128
                ++   TPL  A + G  +   LL+ + GA  +  +        +A +     + K
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKK 220

Query: 129 LLLTHGA 135
             L +  
Sbjct: 221 FFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 1/120 (0%)

Query: 249 DTALTIAADKGHCRFVELLL-SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADI 307
           +  L  A  +     V+ LL SK + +  K++ G  PL  + +     +   L     ++
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 308 DSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSM 367
           +  D    S          V  +  + +   +           Q V    L    +   +
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 1/119 (0%)

Query: 282 NSPLWLAANGGHLSVV-ELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF 340
           N PL  A        V ELL    + +  +D      L  +      +   ++++ +   
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 341 PSDQEMTRYIQTVNDKELLDKCQECSMVIRVAKNQQAERANKNANILLEELDMEKWREE 399
             D        T           E    +     +       N  +    L + K   E
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 119

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (183), Expect = 5e-16
 Identities = 51/242 (21%), Positives = 84/242 (34%), Gaps = 35/242 (14%)

Query: 12  DTALTLACAGGH----EELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHK 67
           D+ L LA          E++  +    A +  ++    TPL LA      ++ + LL   
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 68  ADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNII 127
            D E +  R           G                                     + 
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLAS------------------------------VGVLT 92

Query: 128 KLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLA 187
           +   T       +  +  G + L LA+++G+   V+LL+ +G+D+NAQ   N  TAL LA
Sbjct: 93  QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA 152

Query: 188 CFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSS 247
                 ++VSLLL   A+V      G +P           + + L     + N   +P S
Sbjct: 153 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE-NLQMLPES 211

Query: 248 RD 249
            D
Sbjct: 212 ED 213

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (170), Expect = 3e-14
 Identities = 48/211 (22%), Positives = 74/211 (35%), Gaps = 12/211 (5%)

Query: 113 TPLSLAASGGYVN----IIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM 168
           + L LA           +I+ +    A +N +    L  +PL LA +       + LL  
Sbjct: 4   SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN--NLQQTPLHLAVITNQPEIAEALLGA 61

Query: 169 GSDINAQIETNRNTALTLACFQGRHEVVSL-----LLDRKANVEHRAKTGLTPLMEAASG 223
           G D   +                   V  L          + ++     G T L  A+  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 224 GYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNS 283
           GY+ +  +L+  GADVNA    + R TAL +A D  +   V LLL  GA V     +G S
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGR-TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 284 PLWLAANGGHLSVVELLCKHGADIDSQDNRK 314
           P  L        + + L +   +        
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPES 211

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (159), Expect = 7e-13
 Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 10/203 (4%)

Query: 146 GISPLMLAAMNGHTAA----VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
           G S L LA ++   A     ++ +    + +N Q    + T L LA    + E+   LL 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQPEIAEALLG 60

Query: 202 RKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPV----PSSRDTALTIAAD 257
              + E R   G TPL  A   G +    VL       +   +      +  T L +A+ 
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 258 KGHCRFVELLLSKGAQV-EVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS 316
            G+   VELL+S GA V   +   G + L LA +  +  +V LL K GAD++    +  S
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 317 CLMAAFRKGHVKAVRWMVNHVAQ 339
                + +   +  + +     +
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 10  NHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
           N  TAL LA    + +LV LLL  GAD+     +G++P  L       ++   L     +
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Query: 70  -----MEAQSERTKDTP 81
                 E++ E + DT 
Sbjct: 204 NLQMLPESEDEESYDTE 220

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 4/91 (4%)

Query: 281 GNSPLWLAANGGHLS----VVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           G+S L LA      +    V+  +    A ++ Q+N + + L  A      +    ++  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 337 VAQFPSDQEMTRYIQTVNDKELLDKCQECSM 367
                           +  ++          
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLT 92

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 4/107 (3%)

Query: 249 DTALTIAADKGHCRF----VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
           D+ L +A            +  +    A +  +N    +PL LA       + E L   G
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQ 351
            D + +D R  + L  A  +G + +V  +            +     
Sbjct: 63  CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY 109

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.8 bits (161), Expect = 1e-13
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 4/152 (2%)

Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH 208
            L+ AA  G    V++L+  G+           + L LA   G      +LL    + + 
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDW--LGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 209 RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL 268
           R K   TPL  AAS G+  +  VLL  GADVNA  +   + TAL  A +  H   VELL+
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML--KMTALHWATEHNHQEVVELLI 120

Query: 269 SKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
             GA V  ++K   +   ++ + G+  + E+L
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.5 bits (155), Expect = 7e-13
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 4/153 (2%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
             L  A   G ++ V +L++ GA     D  G +P +  A          +L        
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPF-TTDWLGTSP-LHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
              +   TPL +A S G   +VE+LL  GA+   +++   T L  A    +  +++LL+ 
Sbjct: 62  ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121

Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
           +GA++++++  K   +   ++  NG+    ++L
Sbjct: 122 YGADVHTQS--KFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (136), Expect = 2e-10
 Identities = 37/147 (25%), Positives = 52/147 (35%), Gaps = 30/147 (20%)

Query: 215 TPLMEAASGGYVEVGRVLLDKGADVNAP------------------------------PV 244
             L+EAA  G  +  R+L+  GA                                     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 245 PSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
                T L +AA +GH   VE+LL  GA V  K+    + L  A    H  VVELL K+G
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 305 ADIDSQDNRKVSCLMAAFRKGHVKAVR 331
           AD+ +Q     +    +   G+     
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGNEDLAE 150

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (122), Expect = 2e-08
 Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 6/155 (3%)

Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
             L  AA  G  + +++L+ +GA   +       +           T  +          
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVL----LRAGVS 59

Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
                    T L +A  +G   +V +LL   A+V  +    +T L  A    + EV  +L
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 233 LDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
           +  GADV+         TA  I+ D G+    E+L
Sbjct: 120 IKYGADVHT--QSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 11/71 (15%), Positives = 20/71 (28%)

Query: 281 GNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQF 340
               L  AA  G    V +L  +GA   +         +AA           +   V++ 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61

Query: 341 PSDQEMTRYIQ 351
              +     + 
Sbjct: 62  ARTKVDRTPLH 72

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (144), Expect = 2e-11
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 3/157 (1%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
             L  A A G  E +  LL    ++  ++  G T L +      +    +    +     
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRL--LLRGANPD 60

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT 132
             +RT    +  A   G  + ++ LL   A+    +     PL LAA  G++ +++ L+ 
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 120

Query: 133 HGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG 169
           H A       +  G +   LA + G    V L+   G
Sbjct: 121 HTASNVGHR-NHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 5e-11
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 3/157 (1%)

Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           + L  AA  G    +  LL    ++NAQ               G  E+   LL R AN +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMKLGNPEIARRLLLRGANPD 60

Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
            + +TG   + +AA  G+++  + LL+  ADVN      +    L             L+
Sbjct: 61  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH-LRVVEFLV 119

Query: 268 LSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHG 304
               + V  +N KG++   LA   G   VV L+  +G
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 34/157 (21%), Positives = 53/157 (33%), Gaps = 3/157 (1%)

Query: 80  TPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINS 139
             L+ A + G  E +  LL    N   +N    T L +   G      +         N 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARR---LLLRGANP 59

Query: 140 RTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLL 199
               + G + +  AA  G    ++ LL+  +D+N +           A       V  L+
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 200 LDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKG 236
               +NV HR   G T    A   G  EV  ++   G
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 283 SPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
           + L  AA  G L  +  L ++  ++++Q+    + L          A R ++  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRG 56

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 2e-05
 Identities = 18/127 (14%), Positives = 29/127 (22%)

Query: 250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDS 309
             L  AA +G    +  LL     V  +N  G + L +   G       LL +       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSDQEMTRYIQTVNDKELLDKCQECSMVI 369
                     AA           +         D E    +     +  L   +      
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 370 RVAKNQQ 376
                 +
Sbjct: 123 ASNVGHR 129

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-04
 Identities = 33/157 (21%), Positives = 52/157 (33%), Gaps = 4/157 (2%)

Query: 46  TPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKE 105
             L  AA  G  + +  LL +  ++ AQ+   +     +           LL     + +
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 106 HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
            R        +  A                + +       G  PL LAA  GH   V+ L
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTL----LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 118

Query: 166 LDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR 202
           +   +          +TA  LA   GR+EVVSL+   
Sbjct: 119 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 37/156 (23%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
             L  A  +G  E ++ LL    NV  +   G T L     G      R+        N 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRL---LLRGANP 59

Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL-SVVELL 300
                +    +  AA  G    ++ LL   A V +++ +GN PL LAA  GHL  V  L+
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 301 CKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH 336
               +++  ++++  +    A   G  + V  M  +
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 9   SNHDTALTLACAGGHEELVELLLSRG 34
              DTA  LA   G  E+V L+ + G
Sbjct: 131 HKGDTACDLARLYGRNEVVSLMQANG 156

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (141), Expect = 6e-11
 Identities = 24/135 (17%), Positives = 47/135 (34%), Gaps = 7/135 (5%)

Query: 211 KTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD----TALTIAA---DKGHCRF 263
              L  L EA     +         G D+      ++      TAL +A    D+     
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR 323
           V+ L+     ++ +  KG++ L       +   ++LL +  A I+  +    + L  A R
Sbjct: 64  VDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKR 123

Query: 324 KGHVKAVRWMVNHVA 338
             H      +   ++
Sbjct: 124 LKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 8e-10
 Identities = 24/132 (18%), Positives = 47/132 (35%), Gaps = 10/132 (7%)

Query: 13  TALTLACAGGHEELVELLLSRGADI------EHRDKKGFTPLILAATA---GHDKVVDIL 63
            +L  A        +    + G D+       +  +   T L LA  +       +VD L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 64  LNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGY 123
           + +  +++ Q+ +          +     +  LL    A+ E  N S  TPL +A    +
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASIEIANESGETPLDIAKRLKH 126

Query: 124 VNIIKLLLTHGA 135
            +  +LL    +
Sbjct: 127 EHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 33/163 (20%)

Query: 147 ISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV 206
           +  L  A        +      G D+  +I                             +
Sbjct: 7   LHSLCEAVKTRDIFGLLQAYADGVDLTEKI----------------------------PL 38

Query: 207 EHRAKTGLTPLMEAA---SGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRF 263
            +  +   T L  A        + +   L+    +++      S            +   
Sbjct: 39  ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL--HYCCLTDNAEC 96

Query: 264 VELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD 306
           ++LLL   A +E+ N+ G +PL +A    H    ELL +  + 
Sbjct: 97  LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 8e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 34  GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKAD 69
            A IE  ++ G TPL +A    H+   ++L    + 
Sbjct: 104 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 1e-10
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 2/128 (1%)

Query: 148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
           + L+ +++ G    V+ ++    D +   +          C      V   L+    NV 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF-LVQFGVNVN 61

Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD-TALTIAADKGHCRFVEL 266
                G TPL  AAS   V+V + L++ GA V A      +         ++G+ +  + 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 267 LLSKGAQV 274
           L     ++
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-09
 Identities = 18/129 (13%), Positives = 49/129 (37%), Gaps = 5/129 (3%)

Query: 214 LTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQ 273
           L  L++++  G  ++ + ++ +  D + P           + A           +  G  
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL--VQFGVN 59

Query: 274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN---RKVSCLMAAFRKGHVKAV 330
           V   +  G +PL  AA+  ++ V + L + GA + +      +  +       +G+ +  
Sbjct: 60  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 119

Query: 331 RWMVNHVAQ 339
           +++     +
Sbjct: 120 QFLYGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
             L  +   G  +LV+ ++    D    + +G T L   A       +   L        
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH-NAVCAGHTEIVKFLVQFGVNVN 61

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDY---TPLSLAASGGYVNIIKL 129
            ++    TPL  A S    +V + L+  GA       SD             GY    + 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 130 LLTHGAEI 137
           L     ++
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 114 PLSL---AASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS 170
           PL+L   ++  G  ++++ ++    + +      +      + A +              
Sbjct: 1   PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL---VQFG 57

Query: 171 DINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGL---TPLMEAASGGYVE 227
                 +++  T L  A      +V   L++  A V     + +       E    GY +
Sbjct: 58  VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 117

Query: 228 VGRVLLDKGADV 239
             + L      +
Sbjct: 118 CSQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 2   DVDSETESNHDTALTLACA--GGHEELVELLLSRGADI 37
            V + T S+  TA         G+ +  + L      +
Sbjct: 92  AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 31/156 (19%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 13  TALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
             L+ A A G  + V  LL R     +  ++ G T L +         +++    +    
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALEL--LKQGASP 61

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
              + +  +P+  A   G  + +++L+  GA+    + +   P+ LA   G+  ++  L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 132 THGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLD 167
              ++++ R     G++PL LA   G    V +L  
Sbjct: 122 -AESDLHRRD--ARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 6e-08
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 6/156 (3%)

Query: 149 PLMLAAMNGHTAAVKLLLDM-GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVE 207
            L  AA  G    V+ LL       +A     +     +        +  L   + A+  
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL--KQGASPN 62

Query: 208 HRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELL 267
            +  +G +P+ +AA  G+++  +VL++ GADVN   VP          A +     V   
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN---VPDGTGALPIHLAVQEGHTAVVSF 119

Query: 268 LSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH 303
           L+  + +  ++ +G +PL LA   G   +V++L  H
Sbjct: 120 LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 8e-07
 Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 181 NTALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADV 239
              L+ A  +G  + V  LL R+  + +   + G T L     G       +L    +  
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPN 62

Query: 240 NAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVEL 299
                 +S              + +      GA V V +  G  P+ LA   GH +VV  
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLV---EHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 300 LCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV 337
                +D+  +D R ++ L  A ++G    V  +  H+
Sbjct: 120 -LAAESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 35  ADIEHRDKKGFTPLILAATAGHDKVVDILLNH 66
           +D+  RD +G TPL LA   G   +VDIL  H
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 7/160 (4%)

Query: 43  KGFTPLILAATAGHDKVVDILL-NHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRG 101
           +    L  AA  G  + V  LL       +A +   K     +        +  L   +G
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELL--KQG 58

Query: 102 ANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAA 161
           A+   ++ S  +P+  AA  G+++ +K+L+ HGA++N   G+  G  P+ LA   GHTA 
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT--GALPIHLAVQEGHTAV 116

Query: 162 VKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLD 201
           V  L     D++ + +    T L LA  +G  ++V +L  
Sbjct: 117 VSFLAAES-DLHRR-DARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 1/89 (1%)

Query: 280 KGNSPLWLAANGGHLSVV-ELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA 338
           +    L  AA  G +  V  LL +     D+ +    + L          A+  +    +
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 339 QFPSDQEMTRYIQTVNDKELLDKCQECSM 367
               D   T  +        LD  +    
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVE 89

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 22/100 (22%), Positives = 41/100 (41%)

Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
           R +       +K E  ++++  ++ E  K + E+ E  R    +  E  N    +  E+L
Sbjct: 39  RRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKL 98

Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEE 496
             +    +  R A       + Q+K +  EE RK  E +E
Sbjct: 99  AQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138

>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All alpha proteins
fold: Non-globular all-alpha subunits of globular proteins
superfamily: Stathmin
family: Stathmin
domain: Stathmin 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 14/117 (11%), Positives = 37/117 (31%)

Query: 397 REESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVIRVAKNQQAERANKNANILLEEL 456
           +  S            +++    +E ++K    EE             A K  +      
Sbjct: 22  KPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQ 81

Query: 457 DMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEEEEEVEVQEVEGEMME 513
              +      + A+ +  ++ +  K  ++      +E  +E+++  E      E+ E
Sbjct: 82  KAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-05
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 13  TALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA 72
             L  A A G  E V  LL  GA+    +  G  P I     G  +V ++LL H A+   
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRP-IQVMMMGSARVAELLLLHGAEPNC 63

Query: 73  QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
               T   P+  A   G  + + +L   GA  + R+     P+ LA   G+ ++ + L 
Sbjct: 64  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 3/121 (2%)

Query: 149 PLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEH 208
            L  AA  G    V+ LL+ G++ NA     R     +     R   +           +
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELL---LLHGAEPN 62

Query: 209 RAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLL 268
            A           +     +  +++   A        +     + +A + GH      L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 269 S 269
           +
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 113 TPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDI 172
             L+ AA+ G V  ++ LL  GA  N+          +M+         +      G++ 
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLL---LHGAEP 61

Query: 173 NAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVL 232
           N          +  A  +G  + + +L    A ++ R   G  P+  A   G+ +V R L
Sbjct: 62  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 233 LD 234
             
Sbjct: 122 RA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-05
 Identities = 24/122 (19%), Positives = 34/122 (27%), Gaps = 3/122 (2%)

Query: 46  TPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKE 105
             L  AA  G  + V  LL   A+  A +   +     +     R   + LL     N  
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 106 HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLL 165
                       A  G    ++     H A          G  P+ LA   GH    + L
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVV---LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 166 LD 167
             
Sbjct: 122 RA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 4e-04
 Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNA 241
             L  A  +GR E V  LL+  AN    A                     LL        
Sbjct: 5   DWLATAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 242 PPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL 300
              P++    +  AA +G    + +L   GA+++V++  G  P+ LA   GH  V   L
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 19/143 (13%), Positives = 55/143 (38%), Gaps = 4/143 (2%)

Query: 375 QQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEEEEEVI 434
           ++         I  EE+     + +        + ++   +K ++ E +R   E  +   
Sbjct: 161 KKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASA 220

Query: 435 RVAKNQQAERANKNANILLEELDMEKWREESKRAAQARKRERKKQKKLEKKEEKRKAMEE 494
           ++    Q +          E    E  ++ +++    R +  K+Q++      K +  E+
Sbjct: 221 KMLHEMQRKNEQMMEQK--ERSYQEHLKQLTEKMENDRVQLLKEQERTL--ALKLQEQEQ 276

Query: 495 EEEEEEEVEVQEVEGEMMEEETE 517
             +E  + E + ++ E+ + +T+
Sbjct: 277 LLKEGFQKESRIMKNEIQDLQTK 299

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 12  DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADME 71
           D     A   G  + V+  +++G D+    + G  PL  AA  G  ++++ LL   AD+ 
Sbjct: 3   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

Query: 72  AQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLL 131
           A  +         A   G    V+LLL++GA+K  +     T L    +      IK LL
Sbjct: 63  APDKHHITPL-LSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN----QAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	596
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1ansa_	27	Neurotoxin III (ATX III) {Sea anemone (Anemonia su	93.68

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-47  Score=400.84  Aligned_cols=318  Identities=36%  Similarity=0.467  Sum_probs=270.0

Q ss_pred             CcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCcH
Q psy904           12 DTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGRY   91 (596)
Q Consensus        12 ~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~   91 (596)
                      .||||+||..|++++|++|+++|+++|..|..|.||||+|+..|+.++|++|+++|++++.. +..|.||||+|+..|+.
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~-~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK-AKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCC-CTTSCCHHHHHHHHTCH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCC-CCCCCCHHHHHHHcCCH
Confidence            38999999999999999999999999999999999999999999999999999999887664 46788999999988888


Q ss_pred             HHHHHHHhCCCC---------------------------------ccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCcc
Q psy904           92 EVVELLLTRGAN---------------------------------KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEIN  138 (596)
Q Consensus        92 eivk~LL~~g~~---------------------------------~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~  138 (596)
                      +++++|+..+.+                                 ....+..+.++|+.|+..++.+++++|+++|.+++
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            888888754433                                 23345567788888888888888888888888777


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc--------------------------------cccCCCcHHHH
Q psy904          139 SRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQ--------------------------------IETNRNTALTL  186 (596)
Q Consensus       139 ~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~--------------------------------~~~~~~t~L~~  186 (596)
                      ....+  |.+||++|+..|+.+++++|+.+|++++..                                .+..+.|||+.
T Consensus       160 ~~~~~--~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  237 (408)
T d1n11a_         160 AAGKN--GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL  237 (408)
T ss_dssp             CCCSS--CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cCCCc--CchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHH
Confidence            66544  778888888888888888888887765432                                12345578888


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHH
Q psy904          187 ACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVEL  266 (596)
Q Consensus       187 A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~  266 (596)
                      |+..++.+++++++..+...+..+..|.|||+.|+..++.+++++|+++|++++.  .+..+.||||.++..++..++++
T Consensus       238 a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~--~~~~~~t~L~~~~~~~~~~~~~~  315 (408)
T d1n11a_         238 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA--TTRMGYTPLHVASHYGNIKLVKF  315 (408)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC--CCSSCCCHHHHHHHSSCSHHHHH
T ss_pred             HHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccc--ccccccccchhhcccCcceeeee
Confidence            8888888889998888888888888999999999999999999999999998877  45678899999999999999999


Q ss_pred             HHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy904          267 LLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMV  334 (596)
Q Consensus       267 Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  334 (596)
                      |++.|++++.+|..|.||||+|+..|+.++|++|+++|||++.+|..|.||||+|+.+|+.++|++|.
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             eccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988664

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-40  Score=347.16  Aligned_cols=306  Identities=32%  Similarity=0.439  Sum_probs=269.5

Q ss_pred             CCCCccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc---------
Q psy904            2 DVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEA---------   72 (596)
Q Consensus         2 di~~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~---------   72 (596)
                      |||. .+.+|.||||+||..|+.++|++||++|++++..+..|.||||+|+..|+.+++++|+..+.+...         
T Consensus        25 ~in~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~  103 (408)
T d1n11a_          25 SPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPL  103 (408)
T ss_dssp             CSCC-SSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHH
T ss_pred             CCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchh
Confidence            5554 467899999999999999999999999999999999999999999999999999999876554321         


Q ss_pred             -----------------------cccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHH
Q psy904           73 -----------------------QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKL  129 (596)
Q Consensus        73 -----------------------~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~  129 (596)
                                             ..+..+.++|+.|+..++.+++++|+++|++++..+..|.+||++|+..|+.+++++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~  183 (408)
T d1n11a_         104 HIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL  183 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHH
Confidence                                   123456789999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCccccCC-------------------------------CCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q psy904          130 LLTHGAEINSRTG-------------------------------SKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIET  178 (596)
Q Consensus       130 Ll~~g~~~~~~~~-------------------------------~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~  178 (596)
                      |+.+|++++....                               +..+.|||++|+..++.+++++++..+...+.. +.
T Consensus       184 Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~-~~  262 (408)
T d1n11a_         184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG-NK  262 (408)
T ss_dssp             HGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC-CT
T ss_pred             HHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccc-cC
Confidence            9999887654321                               233678888899999999999999988877765 66


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHc
Q psy904          179 NRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADK  258 (596)
Q Consensus       179 ~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~  258 (596)
                      .|.|||+.|+..++.+++++|++.|++++..+..+.||||.++..++..+++++++.|++++.  .+..|.||||+|+..
T Consensus       263 ~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~--~d~~G~T~Lh~A~~~  340 (408)
T d1n11a_         263 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA--KTKLGYSPLHQAAQQ  340 (408)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHT
T ss_pred             CCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccc--cCCCCCCHHHHHHHc
Confidence            788999999999999999999999999999999999999999999999999999999999988  567999999999999


Q ss_pred             CcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHH---HCCCCcccCC
Q psy904          259 GHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLC---KHGADIDSQD  311 (596)
Q Consensus       259 ~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll---~~gad~~~~~  311 (596)
                      |+.++|++|+++|+|++.+|.+|.||||+|+..|+.++|++|.   +.+.++...+
T Consensus       341 g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         341 GHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD  396 (408)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC---
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccccccccc
Confidence            9999999999999999999999999999999999999998664   3455554444

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-35  Score=288.93  Aligned_cols=274  Identities=30%  Similarity=0.444  Sum_probs=212.5

Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHC
Q psy904           10 NHDTALTLACAGGHEELVELLLSRGADIEHRD-KKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSG   88 (596)
Q Consensus        10 ~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d-~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   88 (596)
                      +++|+||.||..|++++|++|+++|+++|..+ ..|+||||+|+..|+.+++++|++.+..+... ...+.+|.++++..
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~-~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR-KKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhcccccccccc-ccccchhhHHHhhc
Confidence            35689999999999999999999999998665 46889999999999999999999988877654 34677888898888


Q ss_pred             CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904           89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM  168 (596)
Q Consensus        89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~  168 (596)
                      +..+...+++....+....+..+.++++.|+..++..++..++....+++.....    .....                
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~----------------  142 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT----KEDQE----------------  142 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC----CHHHH----------------
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccc----hhhhh----------------
Confidence            9999998988888777777888888888888888888888888876665543321    11110                


Q ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhc----CcHHHHHHHHhCCCCCCCCC
Q psy904          169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASG----GYVEVGRVLLDKGADVNAPP  243 (596)
Q Consensus       169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~----g~~~iv~~Ll~~g~~~~~~~  243 (596)
                            .....|.||||+|+..++.+++++|++. |++++..+..|.++++.+...    +...++++|+++|++++.  
T Consensus       143 ------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~--  214 (285)
T d1wdya_         143 ------RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--  214 (285)
T ss_dssp             ------HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC--
T ss_pred             ------hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCc--
Confidence                  0133566888888888888888888864 778888888887777665443    335677888888888776  


Q ss_pred             CCCCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCC
Q psy904          244 VPSSRDTALTIAADKGHCRFVELLLS-KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDN  312 (596)
Q Consensus       244 ~~~~g~t~L~~A~~~~~~~iv~~Ll~-~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~  312 (596)
                      .+..|.||||+|+..|+.++|++|++ .|++++.+|.+|.||||+|+..|+.++|++|+++|||+|..|.
T Consensus       215 ~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             cCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            45677888888888888888888887 4788888888888888888888888888888888888887663

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-34  Score=283.25  Aligned_cols=250  Identities=32%  Similarity=0.403  Sum_probs=209.1

Q ss_pred             CCCCCccCCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCh
Q psy904            1 MDVDSETESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDT   80 (596)
Q Consensus         1 ~di~~~~d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t   80 (596)
                      .|||..++..|.||||+|+..|+.++|++|++.|..++..+..+.+|+++|+..+..+...+++....+... .+..+.+
T Consensus        29 ~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  107 (285)
T d1wdya_          29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFT  107 (285)
T ss_dssp             CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCB
T ss_pred             CCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhcccccc-cccCCCc
Confidence            478888999999999999999999999999999999999999999999999999999999999998766544 3567899


Q ss_pred             HHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHH
Q psy904           81 PLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA  160 (596)
Q Consensus        81 ~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~e  160 (596)
                      ++++|+..|+..++..++....+++.......  +..                       .....|.||||+|+..|+.+
T Consensus       108 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------------------~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_         108 AFMEAAVYGKVKALKFLYKRGANVNLRRKTKE--DQE-----------------------RLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCH--HHH-----------------------HTTCCCCCHHHHHHHHTCHH
T ss_pred             hhHHHHHhcchhhhhhhhhhcccccccccchh--hhh-----------------------hhcccCchHHHHHHHcCCHH
Confidence            99999999999999999998877665433221  110                       01123778888888888888


Q ss_pred             HHHHHHhc-CCCcccccccCCCcHHHHHHHc----CCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHh-
Q psy904          161 AVKLLLDM-GSDINAQIETNRNTALTLACFQ----GRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLD-  234 (596)
Q Consensus       161 iv~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~----~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-  234 (596)
                      ++++|++. |++++.. +..+.++++.+...    +...++++|++.|++++..+..|.||||.|+..|+.+++++|++ 
T Consensus       163 ~~~~Ll~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         163 VLKILLDEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHTSCCCTTCC-CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHhccCCCcccc-cCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            88888865 6676655 45566666655433    34578999999999999999999999999999999999999997 


Q ss_pred             CCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCC
Q psy904          235 KGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNK  279 (596)
Q Consensus       235 ~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~  279 (596)
                      .|++++.  .+..|.||||+|+..|+.++|++||++|+|+|..|.
T Consensus       242 ~g~din~--~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         242 EHIEIND--TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             SSCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCCCCcC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            4888877  667899999999999999999999999999998873

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-35  Score=285.07  Aligned_cols=242  Identities=26%  Similarity=0.261  Sum_probs=118.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCCCccc--cccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHH
Q psy904           41 DKKGFTPLILAATAGHDKVVDILLNHKADMEA--QSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLA  118 (596)
Q Consensus        41 d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~--~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A  118 (596)
                      +.+|.||||+||.+|+.+++++|+++|+++..  ..+..|.||||+|+..|+.++|++|++.|++++..|..|.||||+|
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhh
Confidence            34444555555555555555555444433221  1233444555555555555555555555555555555555555555


Q ss_pred             HhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHH-cCCHHHHH
Q psy904          119 ASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACF-QGRHEVVS  197 (596)
Q Consensus       119 ~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~-~~~~~ii~  197 (596)
                      +..++.+++++|+..+.........     .+...........                  ...++..... ........
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~-----~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~  142 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASD-----TYLTQSQDCTPDT------------------SHAPAAVDSQPNPENEEEP  142 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC---------------------------------------------------------
T ss_pred             hccCchHHHHHHHhhccchhcccch-----hhhhHHhhhcccc------------------hHHHHHHHhhcchhHHHHH
Confidence            5555555555555543322211110     0000000000000                  0000000000 00011111


Q ss_pred             HHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC
Q psy904          198 LLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVK  277 (596)
Q Consensus       198 ~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~  277 (596)
                      .+...+.+++..+..|.||||+|+..|+.+++++|++.+++++.. .+..|.||||+|+..|+.+++++|+++|++++.+
T Consensus       143 ~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~  221 (255)
T d1oy3d_         143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP-EPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR  221 (255)
T ss_dssp             -CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HhhhcCcccccccccCcccccccccccccccccchhccccccccc-ccccccccccccccccHHHHHHHHHHCCCCCCCC
Confidence            222234555566666777777777777777777777666665542 2345666666666666666666666666666666


Q ss_pred             CCCCChHHHHHHhcCcHHHHHHHHHCCCC
Q psy904          278 NKKGNSPLWLAANGGHLSVVELLCKHGAD  306 (596)
Q Consensus       278 d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  306 (596)
                      |..|.||||+|+..|+.+++++|+++||+
T Consensus       222 d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         222 MYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            66666666666666666666666666664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-34  Score=271.32  Aligned_cols=186  Identities=31%  Similarity=0.448  Sum_probs=141.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc
Q psy904          146 GISPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY  225 (596)
Q Consensus       146 g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  225 (596)
                      |.||||+|+..|+.+++++|+..+...... ...+.++++.++..++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus        37 G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~  115 (223)
T d1uoha_          37 SRTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR  115 (223)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCSCCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHhhhhcccccccccccccccc-cccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCC
Confidence            444444444444445555554444443333 3344567777777777777777777777777778888888888888888


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC
Q psy904          226 VEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA  305 (596)
Q Consensus       226 ~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  305 (596)
                      .+++++|+++|++++.  .+..|.||||+|+..++..++++|+..|++++..|..|.||||+|+..|+.++|++|+++|+
T Consensus       116 ~e~~~~Ll~~g~d~~~--~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Ga  193 (223)
T d1uoha_         116 HEIAVMLLEGGANPDA--KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA  193 (223)
T ss_dssp             HHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCC--cCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCC
Confidence            8888888888887776  55678888888888888888888888888888888888888888888888888888888888


Q ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy904          306 DIDSQDNRKVSCLMAAFRKGHVKAVRWMVN  335 (596)
Q Consensus       306 d~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  335 (596)
                      +++..|..|+||||+| ..|+.+|+++|++
T Consensus       194 d~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         194 SIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            8888888888888887 4688888888874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-33  Score=267.84  Aligned_cols=218  Identities=28%  Similarity=0.402  Sum_probs=186.3

Q ss_pred             ChHHHHHHHCCcHHHHHHHH-hCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC
Q psy904           79 DTPLSLACSGGRYEVVELLL-TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG  157 (596)
Q Consensus        79 ~t~L~~A~~~g~~eivk~LL-~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g  157 (596)
                      .+.|+.++..|+++.|+.+| ..+..++..|..|.||||+|+..|+.+++++|+..+.........  +.++++.++..|
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~   81 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA--GWSPLHIAASAG   81 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT--CCCHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccc--cccccccccccc
Confidence            46777777778877775444 455667777888888888888888888888888777666554433  678888888888


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCC
Q psy904          158 HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA  237 (596)
Q Consensus       158 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~  237 (596)
                      +.+++++|++.+++++.. +..|.||||+|+.+++.+++++|+++|++++..+..|.||||+|+..++..++++|+..+.
T Consensus        82 ~~~i~~~Ll~~~~d~~~~-d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~  160 (223)
T d1uoha_          82 RDEIVKALLGKGAQVNAV-NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA  160 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             ccchhHHHhccCceeEee-CCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccc
Confidence            888888888888887765 6778899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHH
Q psy904          238 DVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCK  302 (596)
Q Consensus       238 ~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  302 (596)
                      +++.  .+..|.||||+|+..|+.++|++|+++|+|++.+|..|+||||+|. .|+.+++++|++
T Consensus       161 ~i~~--~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         161 STNI--QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CSCC--CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             eeee--ccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            9887  5678999999999999999999999999999999999999999984 799999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-34  Score=276.76  Aligned_cols=243  Identities=23%  Similarity=0.188  Sum_probs=179.5

Q ss_pred             cCCCChHHHHHHHCCcHHHHHHHHhCCCC---ccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHH
Q psy904           75 ERTKDTPLSLACSGGRYEVVELLLTRGAN---KEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM  151 (596)
Q Consensus        75 ~~~~~t~L~~A~~~g~~eivk~LL~~g~~---~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~  151 (596)
                      +..|.||||+||..|+.++|++|+++|++   ++..+..|.||||+|+..|+.+++++|++.|++++..+.+  |.||||
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~--g~tpL~   83 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG--GHTALH   83 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT--SCCHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccc--cchhhh
Confidence            46789999999999999999999998877   5567788889999999999999999999999888776544  889999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCc-HHHHH
Q psy904          152 LAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGY-VEVGR  230 (596)
Q Consensus       152 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~-~~iv~  230 (596)
                      +|+..++.+++++|+..+........    ..+..........                 ....++........ .....
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~----~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~  142 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDAS----DTYLTQSQDCTPD-----------------TSHAPAAVDSQPNPENEEEP  142 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------------------------
T ss_pred             hhhccCchHHHHHHHhhccchhcccc----hhhhhHHhhhccc-----------------chHHHHHHHhhcchhHHHHH
Confidence            99999999999999877654332211    1110000000000                 00011111111111 11112


Q ss_pred             HHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCC-CCCCChHHHHHHhcCcHHHHHHHHHCCCCccc
Q psy904          231 VLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVK-NKKGNSPLWLAANGGHLSVVELLCKHGADIDS  309 (596)
Q Consensus       231 ~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~  309 (596)
                      .+...+.+++.  .+..|.||||+|+..++.+++++|+++|++++.. +..|.||||+|+..|+.++|++|+++|++++.
T Consensus       143 ~~~~~~~~in~--~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~  220 (255)
T d1oy3d_         143 RDEDWRLQLEA--ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA  220 (255)
T ss_dssp             -CCCGGGGTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HhhhcCccccc--ccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCC
Confidence            22233444444  6678999999999999999999999999998865 57899999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCC
Q psy904          310 QDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPS  342 (596)
Q Consensus       310 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~  342 (596)
                      +|..|.||||+|+.+|+.+++++|+++||+.+.
T Consensus       221 ~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~~~~  253 (255)
T d1oy3d_         221 RMYGGRTPLGSALLRPNPILARLLRAHGAPEPE  253 (255)
T ss_dssp             CCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999997543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.6e-33  Score=278.33  Aligned_cols=125  Identities=26%  Similarity=0.394  Sum_probs=106.0

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHH
Q psy904            8 ESNHDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACS   87 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~   87 (596)
                      +.++.|+|+.||..|++++|++||++|+++|..|.+|.||||+|+..|+.++|++|++++.+.... +..+.+||++++.
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~-~~~~~~~L~~a~~  115 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAAS  115 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccc-ccccccccccccc
Confidence            344568999999999999999999999999999999999999999999999999999998876553 4567889999999


Q ss_pred             CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhC
Q psy904           88 GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTH  133 (596)
Q Consensus        88 ~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~  133 (596)
                      .++.+++++|+.+|...+..+..+.+++++|+..++.+++..++..
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~  161 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccc
Confidence            9999999999988888888888888888887777777777776643

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-32  Score=260.81  Aligned_cols=222  Identities=26%  Similarity=0.269  Sum_probs=120.9

Q ss_pred             hHHHHHHHCCcHHHHHHHHhC-CCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCcccc-CCCCCCCcHHHHHHHcC
Q psy904           80 TPLSLACSGGRYEVVELLLTR-GANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSR-TGSKLGISPLMLAAMNG  157 (596)
Q Consensus        80 t~L~~A~~~g~~eivk~LL~~-g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~g  157 (596)
                      +|||+||..|++++|+.||.. +..++.+|..|.||||+|+..|+.+++++|+++|++++.. ..+..|.+|+++++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            455555555555555555442 3444555555555555555555555555555555554422 12233556666666666


Q ss_pred             CHHHHHHHHhcCCCcccc-cccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCC
Q psy904          158 HTAAVKLLLDMGSDINAQ-IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKG  236 (596)
Q Consensus       158 ~~eiv~~Ll~~~~~~~~~-~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  236 (596)
                      ..++++.++..+...... .+..+.++++.++..++.+++.+|+..|..++..+..|.||||+|+..|+.+++++|+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            666666655554433221 1233445555555555555555555555555555555666666666666666666666554


Q ss_pred             -CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHH-CCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC
Q psy904          237 -ADVNAPPVPSSRDTALTIAADKGHCRFVELLLS-KGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD  306 (596)
Q Consensus       237 -~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~-~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  306 (596)
                       .+++.  .+..|.||||+|+..|+.++|++|++ .|+|++.+|..|.||||+|+.   .+++++|+++|+|
T Consensus       162 ~~~in~--~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         162 KSAVNW--QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             cccccc--cccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence             23333  34455566666666666666666654 356666666666666665552   3455666665554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4e-33  Score=274.56  Aligned_cols=267  Identities=22%  Similarity=0.301  Sum_probs=163.3

Q ss_pred             CcHHHHHHh-cCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCc
Q psy904           12 DTALTLACA-GGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR   90 (596)
Q Consensus        12 ~t~L~~A~~-~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~   90 (596)
                      .||||+|+. .|+..+++.|...++++... .+|.||||+||..|+.++|++|+.+.                       
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~~-----------------------   56 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHE-----------------------   56 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHH-----------------------
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhcc-----------------------
Confidence            367775554 56777777777777665332 35888888888888888887775321                       


Q ss_pred             HHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q psy904           91 YEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMGS  170 (596)
Q Consensus        91 ~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~~  170 (596)
                         ++.++..|++++..|..|.||||+|+..|+.++|++|+++|++++....  .|.|||++|+..++..++.++...+.
T Consensus        57 ---~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~--~g~t~l~~a~~~~~~~~~~~l~~~~~  131 (277)
T d2fo1e1          57 ---AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK--SERSALHQAAANRDFGMMVYMLNSTK  131 (277)
T ss_dssp             ---HHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT--TCCCHHHHHHHTTCHHHHHHHTTSHH
T ss_pred             ---hhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccc--cccccccchhhhcchhhhhhhhhccc
Confidence               1344455555555555555555555555555555555555555544332  25555555555555555555543211


Q ss_pred             ---CcccccccCCCcHHHHHHHcCCHH---HHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCC
Q psy904          171 ---DINAQIETNRNTALTLACFQGRHE---VVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPV  244 (596)
Q Consensus       171 ---~~~~~~~~~~~t~L~~A~~~~~~~---ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~  244 (596)
                         .++. .+..+.++.+.+...+..+   .+.++..........                           ........
T Consensus       132 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~  183 (277)
T d2fo1e1         132 LKGDIEE-LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD---------------------------GAARKDSE  183 (277)
T ss_dssp             HHHTTSC-CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCC---------------------------SGGGTSSS
T ss_pred             ccccccc-cccccchhHHHHHhccccccccccccccccccccccc---------------------------cccccccc
Confidence               1111 1233344555544443322   122222211111000                           00011124


Q ss_pred             CCCCCcHHHHHHHcCcHHHHHHHH-HCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHH
Q psy904          245 PSSRDTALTIAADKGHCRFVELLL-SKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFR  323 (596)
Q Consensus       245 ~~~g~t~L~~A~~~~~~~iv~~Ll-~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~  323 (596)
                      +..|.||||+++..++.+++.+++ ..|.+++.+|..|.||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+.
T Consensus       184 ~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~  263 (277)
T d2fo1e1         184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA  263 (277)
T ss_dssp             SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH
T ss_pred             ccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHH
Confidence            456778888888888888877644 4678888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHh
Q psy904          324 KGHVKAVRWMVN  335 (596)
Q Consensus       324 ~g~~~iv~~Ll~  335 (596)
                      +|+.++|++|+.
T Consensus       264 ~~~~~iv~lL~~  275 (277)
T d2fo1e1         264 NNHHNIVDIFDR  275 (277)
T ss_dssp             TTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHH
Confidence            888888888875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.1e-32  Score=273.66  Aligned_cols=242  Identities=25%  Similarity=0.311  Sum_probs=162.3

Q ss_pred             CChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcC
Q psy904           78 KDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNG  157 (596)
Q Consensus        78 ~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g  157 (596)
                      +.|+|+.||..|++++|++||+.|++++..|..|.||||+|+..|+.++|++|+++|.+......  .+.+||+.++..+
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~--~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN--EGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--TSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccc--ccccccccccccc
Confidence            34666666666666666666666666666666666666666666666666666666665544432  2556666666666


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCC
Q psy904          158 HTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKG  236 (596)
Q Consensus       158 ~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  236 (596)
                      +.+++++|+.+|...... +..+.+++++|+..+..+++..++.. +.++......+..+       ........+....
T Consensus       118 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  189 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI-------MLRDARQWLNSGH  189 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCC-CTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH-------HHHHHHHHHHHTC
T ss_pred             ccchhhcccccCcccccc-cccCccccccccccccchhcccccccccccccccccccccc-------ccccchhhhcccc
Confidence            666666666666655443 45566667776666666666666643 22221111111011       1112223333333


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCC
Q psy904          237 ADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVS  316 (596)
Q Consensus       237 ~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t  316 (596)
                      .+.  ......|.||||+|+..|+.+++++|+++|+|++.++..|.||||+|+..|+.++|++|+++|+|++.+|..|.|
T Consensus       190 ~~~--~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~T  267 (291)
T d1s70b_         190 IND--VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT  267 (291)
T ss_dssp             CCC--CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccc--ccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            222  235567889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHh
Q psy904          317 CLMAAFRKGHVKAVRWMVN  335 (596)
Q Consensus       317 ~L~~A~~~g~~~iv~~Ll~  335 (596)
                      |||+|++    +++.+|.+
T Consensus       268 aL~~A~e----~~~~~L~~  282 (291)
T d1s70b_         268 AFDVADE----DILGYLEE  282 (291)
T ss_dssp             TTTSCCS----GGGHHHHH
T ss_pred             HHHHHHH----HHHHHHHH
Confidence            9999965    46666654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.2e-31  Score=256.27  Aligned_cols=223  Identities=22%  Similarity=0.313  Sum_probs=141.6

Q ss_pred             CcHHHHHHhcCcHHHHHHHHHC-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCcccc--ccCCCChHHHHHHHC
Q psy904           12 DTALTLACAGGHEELVELLLSR-GADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQ--SERTKDTPLSLACSG   88 (596)
Q Consensus        12 ~t~L~~A~~~g~~~ivk~Ll~~-g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~--~~~~~~t~L~~A~~~   88 (596)
                      ++|||+||..|++++|++|+.. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++..  .+..|.+|+++++..
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            5788888888888888888774 5778888888888888888888888888888887766432  234455666666666


Q ss_pred             CcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhc
Q psy904           89 GRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDM  168 (596)
Q Consensus        89 g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~  168 (596)
                      +..+++..++..+..                                 ......+..+.++++.++..++.+++.+|+..
T Consensus        81 ~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  127 (229)
T d1ixva_          81 GNLEVVKSLYDRPLK---------------------------------PDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN  127 (229)
T ss_dssp             TCHHHHHHHHSSSSC---------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccc---------------------------------ccccccccccccccccccccchhhhhhhhhhh
Confidence            666666666555543                                 33323333344555555555555555555555


Q ss_pred             CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcC-CCcccccCCCChHHHHHHhcCcHHHHHHHHh-CCCCCCCCCCCC
Q psy904          169 GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRK-ANVEHRAKTGLTPLMEAASGGYVEVGRVLLD-KGADVNAPPVPS  246 (596)
Q Consensus       169 ~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g-~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~-~g~~~~~~~~~~  246 (596)
                      +...... +..|.||||+|+..++.+++++|++.+ .+++..+..|.||||+|+..|+.+++++|++ .|++++.  .+.
T Consensus       128 ~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~--~d~  204 (229)
T d1ixva_         128 GASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--VDN  204 (229)
T ss_dssp             TCCSCCC-CTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC--CCT
T ss_pred             ccccccc-CCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCC--cCC
Confidence            5544433 444556666666666666666666554 3455566666666666666666666666664 3666665  445


Q ss_pred             CCCcHHHHHHHcCcHHHHHHHHHCCCC
Q psy904          247 SRDTALTIAADKGHCRFVELLLSKGAQ  273 (596)
Q Consensus       247 ~g~t~L~~A~~~~~~~iv~~Ll~~g~d  273 (596)
                      .|.||||+|+   +.+++++|+++|+|
T Consensus       205 ~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         205 KGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             CCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            6666666665   24566777776665

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.4e-32  Score=267.86  Aligned_cols=233  Identities=25%  Similarity=0.346  Sum_probs=145.1

Q ss_pred             hHHHHHHH-CCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCC
Q psy904           80 TPLSLACS-GGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGH  158 (596)
Q Consensus        80 t~L~~A~~-~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~  158 (596)
                      ||||+++. .|+..+++.|.+.++++... ..|.||||+|+.+|+.++|++|+.+                         
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll~~-------------------------   55 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVH-------------------------   55 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHH-------------------------
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCCC-CCCccHHHHHHHcCCHHHHHHHHhc-------------------------
Confidence            44543332 34444444554544443221 2355555555555555555554422                         


Q ss_pred             HHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCC-
Q psy904          159 TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGA-  237 (596)
Q Consensus       159 ~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~-  237 (596)
                        ..+.++..|++++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..++..++.+++..+. 
T Consensus        56 --~~~~~l~~Gadvn~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~  132 (277)
T d2fo1e1          56 --EAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKL  132 (277)
T ss_dssp             --HHHHHHHTCCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHH
T ss_pred             --chhHHHHcCCCcccc-CCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccc
Confidence              112334455555544 4555566666666666666666666666666666666666666666666666665554421 


Q ss_pred             --CCCCCCCCCCCCcHHHHHHHcCcH---HHHHHHHHCC--------CCCCCCCCCCChHHHHHHhcCcHHHHHHHH-HC
Q psy904          238 --DVNAPPVPSSRDTALTIAADKGHC---RFVELLLSKG--------AQVEVKNKKGNSPLWLAANGGHLSVVELLC-KH  303 (596)
Q Consensus       238 --~~~~~~~~~~g~t~L~~A~~~~~~---~iv~~Ll~~g--------~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~  303 (596)
                        .++.  .+..+.++.+.+...+..   ..+.++....        ...+..+..|.||||+++..++.+++.+++ ..
T Consensus       133 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~  210 (277)
T d2fo1e1         133 KGDIEE--LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK  210 (277)
T ss_dssp             HHTTSC--CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS
T ss_pred             cccccc--cccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccc
Confidence              1221  344555666666665433   2333333321        234567788999999999999999999755 67


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCCCc
Q psy904          304 GADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFPSD  343 (596)
Q Consensus       304 gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~  343 (596)
                      |.+++..|..|.||||+|+..|+.++|++|+++|+++...
T Consensus       211 ~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~  250 (277)
T d2fo1e1         211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV  250 (277)
T ss_dssp             CCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCc
Confidence            8999999999999999999999999999999999987653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-29  Score=237.10  Aligned_cols=221  Identities=29%  Similarity=0.370  Sum_probs=142.1

Q ss_pred             CChHHHHHHHCCcHHHHHHHH----hCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHH
Q psy904           78 KDTPLSLACSGGRYEVVELLL----TRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLA  153 (596)
Q Consensus        78 ~~t~L~~A~~~g~~eivk~LL----~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A  153 (596)
                      |.||||+||..|++++|++|+    +.|++++..|..|.||||+|+..|+.+++++|+++|++.+.....  +.++++.|
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~--~~~~~~~a   80 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH--GQTAAHLA   80 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccc--cccccccc
Confidence            556666666666666555554    366777777777777777777777777777777777666554433  56677777


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHH
Q psy904          154 AMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL  233 (596)
Q Consensus       154 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  233 (596)
                      +..++..+++.+..........                              .+.......++|+.+...........|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~  130 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLD------------------------------LEARNYDGLTALHVAVNTECQETVQLLL  130 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCC------------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cccccccchhhhhhcccccccc------------------------------ccccccccccccccccccccchhhhhhh
Confidence            7777766666665543221111                              1122233445566665555556666665


Q ss_pred             hCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCC
Q psy904          234 DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNR  313 (596)
Q Consensus       234 ~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~  313 (596)
                      ....+.... ....+.++|+.|+..+...++.+++.+|.+++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..
T Consensus       131 ~~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~  209 (228)
T d1k1aa_         131 ERGADIDAV-DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCH  209 (228)
T ss_dssp             HTTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccccc-cccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            554443322 3445667777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCHHHHHHHcCCHHHHH
Q psy904          314 KVSCLMAAFRKGHVKAVR  331 (596)
Q Consensus       314 g~t~L~~A~~~g~~~iv~  331 (596)
                      |.||||+|+.+|+.++|+
T Consensus       210 G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         210 NDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             SCCTTTTCSSHHHHHHHT
T ss_pred             CCCHHHHHHhCCCccccC
Confidence            777777777777776663

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=7.1e-29  Score=233.39  Aligned_cols=117  Identities=29%  Similarity=0.296  Sum_probs=62.1

Q ss_pred             hHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904          215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       215 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~  294 (596)
                      ++.+.+.......+...|+..+++++.  .+..|.|||++++..+...++.+|+.++.+++..|..|.||||+|+..|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~~~~~~~~--~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~  169 (209)
T d1ot8a_          92 TPLILAARLAIEGMVEDLITADADINA--ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY  169 (209)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTTC--BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhhhhhcccccc--cCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHH
Confidence            333333333333444444444444333  233444555555555555555555555555555555555666665555566


Q ss_pred             HHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy904          295 SVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM  333 (596)
Q Consensus       295 ~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~L  333 (596)
                      ++|++|+++|+|++..|..|.||||+|+..|+.++|++|
T Consensus       170 ~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         170 EASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            666666665655555555556666666666666655554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-28  Score=230.55  Aligned_cols=219  Identities=28%  Similarity=0.359  Sum_probs=154.4

Q ss_pred             CCCCcHHHHHHhcCcHHHHHHHHH----CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHH
Q psy904            9 SNHDTALTLACAGGHEELVELLLS----RGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSL   84 (596)
Q Consensus         9 ~~g~t~L~~A~~~g~~~ivk~Ll~----~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~   84 (596)
                      .+|+||||+||..|++++|++|++    .|++++..|..|.||||+|+..|+.+++++|+++|++.+.. ...+.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~-~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL-DRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccc-cccccccccc
Confidence            369999999999999999988875    78999999999999999999999999999999888877654 4467788888


Q ss_pred             HHHCCcHHHHHHHHhCCCCc----cCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHH
Q psy904           85 ACSGGRYEVVELLLTRGANK----EHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA  160 (596)
Q Consensus        85 A~~~g~~eivk~LL~~g~~~----~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~e  160 (596)
                      |+..++..+++.+.......    +.....                                   ..++|+.+.......
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~l~~~~~~~~~~  124 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYD-----------------------------------GLTALHVAVNTECQE  124 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTT-----------------------------------SCCHHHHHHHHTCHH
T ss_pred             ccccccccchhhhhhccccccccccccccc-----------------------------------cccccccccccccch
Confidence            88888888887776643221    122222                                   334555555555555


Q ss_pred             HHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCC
Q psy904          161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVN  240 (596)
Q Consensus       161 iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~  240 (596)
                      ....|.....+........+.++|+.|+..+...++.+++..|..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus       125 ~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n  204 (228)
T d1k1aa_         125 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  204 (228)
T ss_dssp             HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             hhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            55555555555444445555666666666666666666666666666666667777777777777777777777777666


Q ss_pred             CCCCCCCCCcHHHHHHHcCcHHHHH
Q psy904          241 APPVPSSRDTALTIAADKGHCRFVE  265 (596)
Q Consensus       241 ~~~~~~~g~t~L~~A~~~~~~~iv~  265 (596)
                      .  .+..|.||||+|+..|+.++|+
T Consensus       205 ~--~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         205 L--KNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             C--CCTTSCCTTTTCSSHHHHHHHT
T ss_pred             C--CCCCCCCHHHHHHhCCCccccC
Confidence            5  4466777777777766666653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=4.4e-28  Score=227.92  Aligned_cols=206  Identities=27%  Similarity=0.272  Sum_probs=191.4

Q ss_pred             HHHHHHHHhCCCCccC-CCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q psy904           91 YEVVELLLTRGANKEH-RNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTAAVKLLLDMG  169 (596)
Q Consensus        91 ~eivk~LL~~g~~~~~-~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~eiv~~Ll~~~  169 (596)
                      .+||++|+++|++++. .|.+|.||||+||..|+.+++++|+..|++++.....  +.++++.++..++...........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~   79 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNT--GRTPLHAAVAADAMGVFQILLRNR   79 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--SCCHHHHHHHTTCHHHHHHHHTCT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccc--cccccccccccccccccccccccc
Confidence            4899999999999987 5899999999999999999999999999998876644  889999999999999888888777


Q ss_pred             CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCC
Q psy904          170 SDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRD  249 (596)
Q Consensus       170 ~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~  249 (596)
                      ..........+.++.+.+.......+...|...+++++..+..|.|||+.++..+...++..|+..+.+++.  .+..|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~--~d~~g~  157 (209)
T d1ot8a_          80 ATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA--QDDKDE  157 (209)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCC
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccc--cccccc
Confidence            766666677788999999999999999999999999999999999999999999999999999999999887  567899


Q ss_pred             cHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHH
Q psy904          250 TALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL  300 (596)
Q Consensus       250 t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~L  300 (596)
                      ||||+|+..|+.++|++|+++|+|++..|..|.||||+|+..|+.++|++|
T Consensus       158 TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         158 TPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4e-29  Score=237.65  Aligned_cols=192  Identities=25%  Similarity=0.259  Sum_probs=140.7

Q ss_pred             CCcHHHHHHHcCCH----HHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHH
Q psy904          146 GISPLMLAAMNGHT----AAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAA  221 (596)
Q Consensus       146 g~t~L~~A~~~g~~----eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~  221 (596)
                      |.||||+|+..|+.    ++++++...+.+++.. +..|.||||+|+..++.+++.+|++.|++++..+..|.|||+.++
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~-d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccC-CCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            55666666666664    3444555566666654 556777777777777777777777777777777777778888888


Q ss_pred             hcCcHHHHHHHHhCCCCCCCC----CCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCC-CCCChHHHHHHhcCcHHH
Q psy904          222 SGGYVEVGRVLLDKGADVNAP----PVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKN-KKGNSPLWLAANGGHLSV  296 (596)
Q Consensus       222 ~~g~~~iv~~Ll~~g~~~~~~----~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d-~~g~TpL~~A~~~g~~~i  296 (596)
                      ..|+..++++|+..+......    .....|.||||.|+..++.+++.+|+..|++++..+ .+|.||||+|+..|+.++
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~  160 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL  160 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHH
Confidence            777777777777765543321    133456788888888888888888888888877655 468888888888888888


Q ss_pred             HHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcC
Q psy904          297 VELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVA  338 (596)
Q Consensus       297 v~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~  338 (596)
                      |++|+++|+|++.+|..|.|||++|+..++.+++++|++.+.
T Consensus       161 v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             HHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            888888888888888888888888888888888888887754

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.1e-29  Score=235.49  Aligned_cols=198  Identities=29%  Similarity=0.293  Sum_probs=141.4

Q ss_pred             CChHHHHHHHCCcH----HHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHH
Q psy904           78 KDTPLSLACSGGRY----EVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLA  153 (596)
Q Consensus        78 ~~t~L~~A~~~g~~----eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A  153 (596)
                      |.||||+|+..|+.    +++++|+..|++++..|..|.||||+|+..|+.+++++|++.|++++.....  |.+||+++
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~--g~t~l~~~   79 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR--GNTPLHLA   79 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTT--CCCHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccc--cccccccc
Confidence            55666666666653    3344455556666666666666666666666666666666666665554332  66666666


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHH
Q psy904          154 AMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLL  233 (596)
Q Consensus       154 ~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  233 (596)
                      +..|+.+++++|+..+......                            .........|.||||.|+..++.+++.+|+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~----------------------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~  131 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLH----------------------------SILKATNYNGHTCLHLASIHGYLGIVELLV  131 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSS----------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccccchhhhhccccccc----------------------------ccccccccccchhhhHHhhcCChhheeeec
Confidence            6666666666666655433221                            012223455778888888888888888888


Q ss_pred             hCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC
Q psy904          234 DKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD  306 (596)
Q Consensus       234 ~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  306 (596)
                      ..|+.++.. .+.+|.||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++.+++++|++.+.+
T Consensus       132 ~~~~~~~~~-~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         132 SLGADVNAQ-EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ccCcccccc-cccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            888877754 345789999999999999999999999999999999999999999999999999999998765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=1.7e-29  Score=256.78  Aligned_cols=234  Identities=15%  Similarity=0.086  Sum_probs=148.5

Q ss_pred             cCCCChHHHHHHHCCcHHHHHH---HHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHH
Q psy904           75 ERTKDTPLSLACSGGRYEVVEL---LLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLM  151 (596)
Q Consensus        75 ~~~~~t~L~~A~~~g~~eivk~---LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~  151 (596)
                      +..|.|||++|+.+|+.+++++   |+..|++++..+..|.||||+|+.+|+.++|++|++.|++++....+..|.||||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR  166 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhH
Confidence            3456788888888888776655   6778888888888888888888888888888888888887776554444778888


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccc--cccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHH
Q psy904          152 LAAMNGHTAAVKLLLDMGSDINAQ--IETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVG  229 (596)
Q Consensus       152 ~A~~~g~~eiv~~Ll~~~~~~~~~--~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv  229 (596)
                      +|+.+|+.++|++|++.|+.....  ...++.||++.|+.+|+.+++++|++.|++++.       +++.+...++..+ 
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~-------~~~~~~~~~~~~~-  238 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY-------AEIHEFEYGEKYV-  238 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHH-------HHHCTTTTTTTTH-
T ss_pred             HHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcch-------HHHHHHHcCcHhh-
Confidence            888888888888888887654321  123455677777788888888888887776542       2222222222222 


Q ss_pred             HHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCC--CCCCCC-------CCCChHHHHHHhcCcHHHHHHH
Q psy904          230 RVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA--QVEVKN-------KKGNSPLWLAANGGHLSVVELL  300 (596)
Q Consensus       230 ~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~--di~~~d-------~~g~TpL~~A~~~g~~~iv~~L  300 (596)
                                          ++++.++..+..++...|+..+.  .++..+       ..+.++|+.|+..|+.+++++|
T Consensus       239 --------------------~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~L  298 (346)
T d2ajaa1         239 --------------------NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL  298 (346)
T ss_dssp             --------------------HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred             --------------------hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHH
Confidence                                12222222222222111111110  111111       1123678888888888888888


Q ss_pred             HHCCCC-----cccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          301 CKHGAD-----IDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       301 l~~gad-----~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      +..|..     .+..+.+|.||||+|++.|+.++|++||+.
T Consensus       299 l~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         299 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            877653     334456788888888888888888888864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5e-26  Score=203.37  Aligned_cols=153  Identities=30%  Similarity=0.357  Sum_probs=142.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy904          182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC  261 (596)
Q Consensus       182 t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~  261 (596)
                      ++||.|+..|+.+++++|+++|++++..|..|.||||+|+ .|+.+++++|++.|++++.  .+..+.++|+.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~--~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccccccccccc--ccccCccccccccccccc
Confidence            7899999999999999999999999999999999999886 6899999999999998887  567889999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCC-CcccCCCCCCCHHHHHHHcCCHHHHHHHHhCc
Q psy904          262 RFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGA-DIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHV  337 (596)
Q Consensus       262 ~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-d~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~  337 (596)
                      .++.+|+..+.+++..+..|.+|||+|+..++.+++++|+++|+ +++.+|..|.||||+|+..|+.++|++|+++|
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          80 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999876 88999999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=200.24  Aligned_cols=151  Identities=28%  Similarity=0.376  Sum_probs=139.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHhc-CCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904          182 TALTLACFQGRHEVVSLLLDR-KANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH  260 (596)
Q Consensus       182 t~L~~A~~~~~~~ii~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~  260 (596)
                      ..|+.||..|+.++|++|+.. +.+++..|..|.||||+|+. |+.+++.+|+..+.+++.  .+..|.+||+.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~--~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV--QDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCcccccccc-cccccccccccccccccc--ccccccccccccccccc
Confidence            569999999999999999875 78999999999999998875 888999999999999887  45788999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Q psy904          261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNH  336 (596)
Q Consensus       261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  336 (596)
                      .+++++++++|++++.+|..|.||||+|+..|+.+++++|+ .|++++.+|..|.||||+|+..|+.+++++|++|
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999999999999999999999999888 6899999999999999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=5.4e-28  Score=245.68  Aligned_cols=234  Identities=16%  Similarity=0.149  Sum_probs=160.8

Q ss_pred             CCCCCcHHHHHHhcCcHHHHHH---HHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccc-cCCCChHHH
Q psy904            8 ESNHDTALTLACAGGHEELVEL---LLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQS-ERTKDTPLS   83 (596)
Q Consensus         8 d~~g~t~L~~A~~~g~~~ivk~---Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~-~~~~~t~L~   83 (596)
                      +.+|.|+|++||..|+.+++++   |+..|++++..|..|+||||+||.+|+.++|++|+++|++++... ...|.||||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR  166 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhH
Confidence            4578899999999999877766   678899999999999999999999999999999999999887653 235789999


Q ss_pred             HHHHCCcHHHHHHHHhCCCCcc---CCCCCCCcHHHHHHhcCCHHHHHHHHhCCCCccccCCCCCCCcHHHHHHHcCCHH
Q psy904           84 LACSGGRYEVVELLLTRGANKE---HRNVSDYTPLSLAASGGYVNIIKLLLTHGAEINSRTGSKLGISPLMLAAMNGHTA  160 (596)
Q Consensus        84 ~A~~~g~~eivk~LL~~g~~~~---~~d~~g~t~L~~A~~~g~~eiv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~g~~e  160 (596)
                      +|+..|+.++|++|++.|++..   ..+..+.||++.|+.+|+.+++++|++.|++++         ++++.+...|+..
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~---------~~~~~~~~~~~~~  237 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA---------YAEIHEFEYGEKY  237 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH---------HHHHCTTTTTTTT
T ss_pred             HHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc---------hHHHHHHHcCcHh
Confidence            9999999999999999987653   333456788888889999999999998876543         2333333333333


Q ss_pred             HHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCC--ccc-------ccCCCChHHHHHHhcCcHHHHHH
Q psy904          161 AVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKAN--VEH-------RAKTGLTPLMEAASGGYVEVGRV  231 (596)
Q Consensus       161 iv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~--~~~-------~~~~g~t~L~~A~~~g~~~iv~~  231 (596)
                      ++.+++..                    ..+..++...+.....+  .+.       ....+.++|+.++..|+.+++++
T Consensus       238 ~~~~~~~~--------------------~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~  297 (346)
T d2ajaa1         238 VNPFIARH--------------------VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRF  297 (346)
T ss_dssp             HHHHHHHH--------------------HHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred             hhHHHHHh--------------------hccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHH
Confidence            33333221                    11111111111111000  000       01123467888888888999999


Q ss_pred             HHhCCCCCC---CCCCCCCCCcHHHHHHHcCcHHHHHHHHHC
Q psy904          232 LLDKGADVN---APPVPSSRDTALTIAADKGHCRFVELLLSK  270 (596)
Q Consensus       232 Ll~~g~~~~---~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  270 (596)
                      |+..+....   ....+..|.||||+||..|+.++|++||+.
T Consensus       298 Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         298 LLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            988765322   222445788999999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.4e-25  Score=197.15  Aligned_cols=150  Identities=30%  Similarity=0.375  Sum_probs=133.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904          181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH  260 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~  260 (596)
                      .|||+.|+..|+.+++++|+++|++++ .+..|.||||+|+..++.+++..++........  ....+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--RTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--CCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccc--ccccccccccccccccc
Confidence            388888999999999999999888876 578899999999999999999988887766554  45677789999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy904          261 CRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWM  333 (596)
Q Consensus       261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~L  333 (596)
                      .+++++|+.+|++++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.|||++|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.2e-25  Score=195.72  Aligned_cols=153  Identities=33%  Similarity=0.427  Sum_probs=140.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHH
Q psy904          148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE  227 (596)
Q Consensus       148 t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  227 (596)
                      ++||+|+..|+.++|++|+++|++++.. +..|.||||+|+ .++.+++++|++.|++++..+..+.++|+.++..+...
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~-d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQ-NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCC-CTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCcc-CCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            7899999999999999999999988775 778889999876 68899999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCC-CCCCCCCCCChHHHHHHhcCcHHHHHHHHHCC
Q psy904          228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGA-QVEVKNKKGNSPLWLAANGGHLSVVELLCKHG  304 (596)
Q Consensus       228 iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~-di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  304 (596)
                      ++.+|+..+.+++.  .+..|.+|||+|+..++.+++++|+++|+ +++.+|..|.||||+|+..|+.++|++|+++|
T Consensus        81 ~~~~l~~~~~~~~~--~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          81 TLQTLLEFQADVNI--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccc--cccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999988887  56789999999999999999999999875 89999999999999999999999999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=8.2e-24  Score=188.08  Aligned_cols=149  Identities=32%  Similarity=0.412  Sum_probs=135.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHH
Q psy904          148 SPLMLAAMNGHTAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVE  227 (596)
Q Consensus       148 t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  227 (596)
                      |||+.|+..|+.++|++|+++|++++  .+..|.||||+|+..++.+++..++.........+..+.++++.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            78999999999999999999988766  3677889999999999999999998888877777888889999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHH
Q psy904          228 VGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELL  300 (596)
Q Consensus       228 iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~L  300 (596)
                      ++++|+..|++++.  .+..|.||||+|+..|+.++|++|+++|+|++.+|..|.||||+|+..|+.+++++|
T Consensus        82 ~~~~l~~~~~~~~~--~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVNA--KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCcccc--ccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999988876  568899999999999999999999999999999999999999999999999999987

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.1e-24  Score=189.36  Aligned_cols=151  Identities=27%  Similarity=0.396  Sum_probs=137.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcH
Q psy904          148 SPLMLAAMNGHTAAVKLLLDM-GSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYV  226 (596)
Q Consensus       148 t~L~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  226 (596)
                      +.|+.||..|+.++|++|+.. +.+++.. +..|.||||+|+ .++.+++.+|+..+.+++..+..|.+||+.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            569999999999999999876 6676665 678899999887 4788999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHC
Q psy904          227 EVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKH  303 (596)
Q Consensus       227 ~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  303 (596)
                      ++++++++.|++++.  .+..|.||||+|+..|+.+++++|+ .|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        82 ~~~~~~l~~~~~~n~--~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          82 DTLKVLVEHGADVNV--PDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccc--ccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999887  5678999999999999999999888 6899999999999999999999999999999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.3e-24  Score=180.93  Aligned_cols=120  Identities=30%  Similarity=0.345  Sum_probs=100.2

Q ss_pred             CChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCC-hHHHHHHhc
Q psy904          213 GLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGN-SPLWLAANG  291 (596)
Q Consensus       213 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~-TpL~~A~~~  291 (596)
                      +.++||+|+..|+++++++|+++|++++.  .+..|.||||+|+ .|+.+++++|+++|++++..+..|. ||||+|+..
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~--~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNA--PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE   79 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTC--CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccc--ccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            34778888888888888888888888776  4567888888664 6888888888888888888887765 588888888


Q ss_pred             CcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q psy904          292 GHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVN  335 (596)
Q Consensus       292 g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~  335 (596)
                      |+.++|++|+++|++++.+|..|.|||++|+.+|+.+++++|+.
T Consensus        80 g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          80 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888888888888888888888888888888888888888875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-23  Score=179.68  Aligned_cols=121  Identities=26%  Similarity=0.330  Sum_probs=112.3

Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHhCCCCccccccCCCChHHHHHHHCCc
Q psy904           11 HDTALTLACAGGHEELVELLLSRGADIEHRDKKGFTPLILAATAGHDKVVDILLNHKADMEAQSERTKDTPLSLACSGGR   90 (596)
Q Consensus        11 g~t~L~~A~~~g~~~ivk~Ll~~g~~i~~~d~~g~t~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~   90 (596)
                      +.++||+||..|++++|++|+++|++++..|..|.||||+|+ .|+.+++++|+++|++++......+.||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            568999999999999999999999999999999999999775 7999999999999999987766556689999999999


Q ss_pred             HHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCHHHHHHHHh
Q psy904           91 YEVVELLLTRGANKEHRNVSDYTPLSLAASGGYVNIIKLLLT  132 (596)
Q Consensus        91 ~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~eiv~~Ll~  132 (596)
                      .++|++|+++|++++..|..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=6.3e-24  Score=180.01  Aligned_cols=105  Identities=32%  Similarity=0.423  Sum_probs=96.1

Q ss_pred             hHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904          215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       215 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~  294 (596)
                      |||++|+..|+.++|++|+++|++++.  .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~--~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCC--CSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcccc--ccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            789999999999999999999988877  567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCcccCCCCCCCHHHHH
Q psy904          295 SVVELLCKHGADIDSQDNRKVSCLMAA  321 (596)
Q Consensus       295 ~iv~~Ll~~gad~~~~~~~g~t~L~~A  321 (596)
                      ++|++|+++|+|++.+|..|.|||++|
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHH
Confidence            999999999999999999999999887

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=174.36  Aligned_cols=121  Identities=19%  Similarity=0.264  Sum_probs=106.3

Q ss_pred             hHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcH
Q psy904          215 TPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHL  294 (596)
Q Consensus       215 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~  294 (596)
                      ++|+.|+..|+.++|++|+++|++++.  .+..|.||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~--~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC--CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc--cccccccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            678899999999999999999998887  557889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCcccCCC-CCCCHHHHH--HHcCCHHHHHHHHhCc
Q psy904          295 SVVELLCKHGADIDSQDN-RKVSCLMAA--FRKGHVKAVRWMVNHV  337 (596)
Q Consensus       295 ~iv~~Ll~~gad~~~~~~-~g~t~L~~A--~~~g~~~iv~~Ll~~~  337 (596)
                      ++|++|+++|++++..+. .+.||++++  +..|+.+++++|+...
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999997764 588887765  5678899999998753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4.3e-23  Score=205.22  Aligned_cols=49  Identities=22%  Similarity=0.271  Sum_probs=39.2

Q ss_pred             CCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHH
Q psy904          274 VEVKNKKGNSPLWLAANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAF  322 (596)
Q Consensus       274 i~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~  322 (596)
                      +|.+|..|+||||+|+..|+.++|++|+++||+++.+|..|.|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            5677778888888888888888888888888888888888888887774

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=4.5e-22  Score=197.70  Aligned_cols=197  Identities=20%  Similarity=0.221  Sum_probs=126.1

Q ss_pred             HHHHHHHhCCCCccccccCCCChHHHHHHHCCcHHHHHHHHhCCCCccCCCCCCCcHHHHHHhcCCH-------HHHHHH
Q psy904           58 KVVDILLNHKADMEAQSERTKDTPLSLACSGGRYEVVELLLTRGANKEHRNVSDYTPLSLAASGGYV-------NIIKLL  130 (596)
Q Consensus        58 eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~g~~eivk~LL~~g~~~~~~d~~g~t~L~~A~~~g~~-------eiv~~L  130 (596)
                      ++...+...+.+++...|..|.||||+||..|+.++|++||++|++++..|..|.||||.|+..++.       +++.++
T Consensus        87 ~~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l  166 (301)
T d1sw6a_          87 EVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL  166 (301)
T ss_dssp             HHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH
T ss_pred             HHHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH
Confidence            3333333456666665577899999999999999999999999999999999999999999986652       455555


Q ss_pred             HhCCCCccccCCCCCCCcHHHHHHHcCC----HHHHHHHHhcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Q psy904          131 LTHGAEINSRTGSKLGISPLMLAAMNGH----TAAVKLLLDMGSDINAQIETNRNTALTLACFQGRHEVVSLLLDRKANV  206 (596)
Q Consensus       131 l~~g~~~~~~~~~~~g~t~L~~A~~~g~----~eiv~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~ii~~Ll~~g~~~  206 (596)
                      ...   +..  .+..|.||||+++..+.    ..++++++                          ..++.+++..+...
T Consensus       167 ~~~---~~~--~d~~g~t~lh~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~~~~~~~  215 (301)
T d1sw6a_         167 YPC---LIL--EDSMNRTILHHIIITSGMTGCSAAAKYYL--------------------------DILMGWIVKKQNRP  215 (301)
T ss_dssp             GGG---GGE--ECTTCCCHHHHHHHHHTSTTCHHHHHHHH--------------------------HHHHHHHHHGGGCC
T ss_pred             hhh---hhh--cccccCCHHHHHHHHhCccccHHHHHHHH--------------------------HHHHHHHHhcCCcc
Confidence            432   222  23447888888775432    23333221                          12344555544332


Q ss_pred             c-cccCCCChHHHHHHhcCcHHH-----HHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcHHHHHHHHHCCCCCCCCCCC
Q psy904          207 E-HRAKTGLTPLMEAASGGYVEV-----GRVLLDKGADVNAPPVPSSRDTALTIAADKGHCRFVELLLSKGAQVEVKNKK  280 (596)
Q Consensus       207 ~-~~~~~g~t~L~~A~~~g~~~i-----v~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~di~~~d~~  280 (596)
                      . .....+.++++.+.......+     +.+++...  +|.  .+..|.||||+|+..|+.++|++|+++|+|++.+|..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--in~--~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~  291 (301)
T d1sw6a_         216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM--LNA--QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS  291 (301)
T ss_dssp             EEEC----------------CHHHHHCSHHHHHHHT--TTC--CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT
T ss_pred             hhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC--ccC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            2 222333344444333322222     22333332  344  5788999999999999999999999999999999999


Q ss_pred             CChHHHHHH
Q psy904          281 GNSPLWLAA  289 (596)
Q Consensus       281 g~TpL~~A~  289 (596)
                      |.|||+||+
T Consensus       292 G~Tpl~~A~  300 (301)
T d1sw6a_         292 GLRPVDFGA  300 (301)
T ss_dssp             SCCGGGGTC
T ss_pred             CCCHHHHcC
Confidence            999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.1e-22  Score=172.14  Aligned_cols=108  Identities=34%  Similarity=0.388  Sum_probs=101.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCc
Q psy904          181 NTALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGH  260 (596)
Q Consensus       181 ~t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~  260 (596)
                      .|||++|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~--~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA--PDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC--CSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeee--cccccccchhhhhhcCc
Confidence            3799999999999999999999999999999999999999999999999999999999887  56789999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHh
Q psy904          261 CRFVELLLSKGAQVEVKNKKGNSPLWLAAN  290 (596)
Q Consensus       261 ~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~  290 (596)
                      .+++++|+++|+|++.+|..|.||||+|..
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            999999999999999999999999998843

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=6.3e-21  Score=168.75  Aligned_cols=126  Identities=17%  Similarity=0.174  Sum_probs=108.0

Q ss_pred             HHHHHHhcCcHHHHHHHHhCCCCCCCC----CCCCCCCcHHHHHHHc---CcHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q psy904          216 PLMEAASGGYVEVGRVLLDKGADVNAP----PVPSSRDTALTIAADK---GHCRFVELLLSKGAQVEVKNKKGNSPLWLA  288 (596)
Q Consensus       216 ~L~~A~~~g~~~iv~~Ll~~g~~~~~~----~~~~~g~t~L~~A~~~---~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A  288 (596)
                      .|..|+..+++..+..++..|.+++..    ..+..|.||||+|+..   +..++|++|+++|++++.+|..|.||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            355677778887777777777766542    2345688999999974   678999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhCcCCCC
Q psy904          289 ANGGHLSVVELLCKHGADIDSQDNRKVSCLMAAFRKGHVKAVRWMVNHVAQFP  341 (596)
Q Consensus       289 ~~~g~~~iv~~Ll~~gad~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~  341 (596)
                      +..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|++.++...
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999999877533

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.3e-21  Score=165.95  Aligned_cols=120  Identities=21%  Similarity=0.239  Sum_probs=109.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccCCCChHHHHHHhcCcHHHHHHHHhCCCCCCCCCCCCCCCcHHHHHHHcCcH
Q psy904          182 TALTLACFQGRHEVVSLLLDRKANVEHRAKTGLTPLMEAASGGYVEVGRVLLDKGADVNAPPVPSSRDTALTIAADKGHC  261 (596)
Q Consensus       182 t~L~~A~~~~~~~ii~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~  261 (596)
                      ++|+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++.  .+..|.||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~--~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA--ADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC--CCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccccccc--ccccCcccccccchhhHH
Confidence            688999999999999999999999999999999999999999999999999999999887  567899999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCC-CCChHHHHH--HhcCcHHHHHHHHHC
Q psy904          262 RFVELLLSKGAQVEVKNK-KGNSPLWLA--ANGGHLSVVELLCKH  303 (596)
Q Consensus       262 ~iv~~Ll~~g~di~~~d~-~g~TpL~~A--~~~g~~~iv~~Ll~~  303 (596)
                      +++++|+++|++++..+. .|.||++++  +..|+.+++++|+..
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999999998774 588887665  577899999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=6.9e-20  Score=161.99  Aligned_cols=121  Identities=19%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccc------cCCCChHHHHHHhc---CcHHHHHHHHhCCCCCCCCCCCCCCCcHHHH
Q psy904          184 LTLACFQGRHEVVSLLLDRKANVEHR------AKTGLTPLMEAASG---GYVEVGRVLLDKGADVNAPPVPSSRDTALTI  254 (596)
Q Consensus       184 L~~A~~~~~~~ii~~Ll~~g~~~~~~------~~~g~t~L~~A~~~---g~~~iv~~Ll~~g~~~~~~~~~~~g~t~L~~  254 (596)
                      |..|+..+++..+..++..|.+++..      +..|.||||+|+..   |..+++++|+++|++++.  .+..|.||||+
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~--~d~~g~TpLh~   87 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK--QTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC--CCTTCCCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh--hhhhhcccccc
Confidence            34455555555555555555544332      56788999999964   678999999999999887  56789999999


Q ss_pred             HHHcCcHHHHHHHHHCCCCCCCCCCCCChHHHHHHhcCcHHHHHHHHHCCCC
Q psy904          255 AADKGHCRFVELLLSKGAQVEVKNKKGNSPLWLAANGGHLSVVELLCKHGAD  306 (596)
Q Consensus       255 A~~~~~~~iv~~Ll~~g~di~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  306 (596)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999997654

>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}

class: Small proteins
fold: Neurotoxin III (ATX III)
superfamily: Neurotoxin III (ATX III)
family: Neurotoxin III (ATX III)
domain: Neurotoxin III (ATX III)
species: Sea anemone (Anemonia sulcata) [TaxId: 6108]

Probab=93.68  E-value=0.0079  Score=31.52  Aligned_cols=9  Identities=67%  Similarity=1.892  Sum_probs=8.2

Q ss_pred             ccccccCCc
Q psy904          573 FPCYWTGRP  581 (596)
Q Consensus       573 ~~~~~~~~~  581 (596)
                      -||||.|-|
T Consensus         4 cpcywggcp   12 (27)
T d1ansa_           4 CPCYWGGCP   12 (27)
T ss_dssp             CCSTTTTCS
T ss_pred             ccccccCCc
Confidence            599999988