Psyllid ID: psy9054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MVVRTFQSIPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQKLHPDPDQSPLSGNG
Secondary Structure (PSIPRED)
cEEEEEcEEEccccccccccEEEEcccEEEEEccccccEEEEEEEccEEEEEEcccccEEEEEcccEEEEEEEcccccccccEEEEEEEccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccEEEcccccccccEEEEcccEEEEEcccccccEEEEEEEEEEEEEEcccccEEEEEccEEEEEEEEcccccccccEEEEEEEccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mvvrtfqsiplsnlpepsgnvlhqepattayienenlgtgTLYIAESklqwtnsssglgfaleypritihAISRDTNHFAEECIYLQVereksdegdgaggdigdeeddddddegsmieirlvpqdktALEDIFMAMNQcqklhpdpdqsplsgng
Flexible Loop (DISEMBL)
mvvrtfqsiplsnlpepsgnVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQvereksdegdgaggdigdeeddddddeGSMIEIRLVPQDKTALEDIFMAMNQCQKlhpdpdqsplsgng
Low Complexity Region (SEG)
MVVRTFQSIPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSdegdgaggdigdeeddddddegSMIEIRLVPQDKTALEDIFMAMNQCQKLHPDPDQSPLSGNG
Disordered region (IsUnstruct)
***************************TTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQV****************************************ALEDIFMA********************
Disordered Region (DISOPRED)
**VRT*QSIPLSNLPE*****LHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQV******************************EIRLVPQDKTALEDIFMAMNQCQK**************
Disordered Region (DISEMBL)
MVVRTFQSIPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVER*********GGDIGD********EGSMIEIRLVPQDKTALEDIFMAMNQCQKLH************
Disordered Region (DISPRO)
MVVRTFQSIPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREK**********************GSMIEIRLVPQDKTALEDIFMAMNQCQKLHP***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVVRTFQSIPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQKLHPDPDQSPLSGNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q28678	236	Methylosome subunit pICln	no	N/A	0.814	0.538	0.488	1e-24
P54106	241	Methylosome subunit pICln	N/A	N/A	0.858	0.556	0.478	2e-23
P35521	235	Methylosome subunit pICln	yes	N/A	0.833	0.553	0.452	4e-23
Q04753	236	Methylosome subunit pICln	yes	N/A	0.839	0.555	0.459	1e-22
Q61189	236	Methylosome subunit pICln	yes	N/A	0.839	0.555	0.452	2e-22
P54105	237	Methylosome subunit pICln	yes	N/A	0.820	0.540	0.480	3e-22
Q5R719	237	Methylosome subunit pICln	yes	N/A	0.820	0.540	0.480	3e-22
Q9LVA7	229	Chloride conductance regu	yes	N/A	0.833	0.567	0.297	2e-10

>sp|Q28678|ICLN_RABIT Methylosome subunit pICln OS=Oryctolagus cuniculus GN=CLNS1A PE=2 SV=2

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 4/131 (3%)

Query: 15  PEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISR 74
           P P+  + HQ+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I++HA+SR
Sbjct: 10  PGPTEGLRHQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTISLHAVSR 68

Query: 75  DTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIF 134
           D N + +E +Y+ V  +  +E       + DEE+D DDD   + E R VP DK+ALE +F
Sbjct: 69  DPNAYPQEHLYVMVNAKFGEESKEL---VADEEEDSDDDVEPISEFRFVPGDKSALEAMF 125

Query: 135 MAMNQCQKLHP 145
            AM +CQ LHP
Sbjct: 126 TAMCECQALHP 136

The interaction with Sm proteins inhibits their assembly on U RNA and interferes with snRNP biogenesis. Inhibits the binding of survival motor neuron protein (SMN) to Sm proteins. May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway.
Oryctolagus cuniculus (taxid: 9986)

>sp|P54106|ICLN_XENLA Methylosome subunit pICln OS=Xenopus laevis GN=clns1a PE=2 SV=1

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 87/138 (63%), Gaps = 4/138 (2%)

Query: 11  LSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIH 70
           LS+ P P+  V   +P T A +    LG GTLYIAES+L W N S GLGF+LEYP I++H
Sbjct: 4   LSSFPPPADGVRRLQPGTEAVVGGRGLGPGTLYIAESRLSWLNGS-GLGFSLEYPSISLH 62

Query: 71  AISRDTNHFAEECIYLQVEREKSDEGDG---AGGDIGDEEDDDDDDEGSMIEIRLVPQDK 127
           AISRDT  + EE +Y+ V  + +D+ D          +E +DDDDDE  + EIR VP +K
Sbjct: 63  AISRDTAAYPEEHLYVMVNSKLADKEDKEAHMADQEEEESEDDDDDEEPITEIRFVPGEK 122

Query: 128 TALEDIFMAMNQCQKLHP 145
           + L ++F AM  CQ LHP
Sbjct: 123 SDLGEMFSAMCDCQALHP 140

The interaction with Sm proteins inhibits their assembly on U RNA and interferes with snRNP biogenesis. Inhibits the binding of survival motor neuron protein (SMN) to Sm proteins. May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway.

Xenopus laevis (taxid: 8355)

>sp|P35521|ICLN_CANFA Methylosome subunit pICln OS=Canis familiaris GN=CLNS1A PE=1 SV=1

 Score =  107 bits (266), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 85/137 (62%), Gaps = 7/137 (5%)

Query: 11  LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           L + P P     +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct: 4   LKSFPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 62

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKT 128
           +HA+SRD N +  E +Y+ V  +  +E   +  +    E+D DDD   + E R VP DK+
Sbjct: 63  LHAVSRDLNAYPREHLYVMVNAKFGEESKESVAE----EEDSDDDVEPIAEFRFVPSDKS 118

Query: 129 ALEDIFMAMNQCQKLHP 145
           ALE +F AM +CQ LHP
Sbjct: 119 ALEAMFTAMCECQALHP 135

The interaction with Sm proteins inhibits their assembly on U RNA and interferes with snRNP biogenesis. Inhibits the binding of survival motor neuron protein (SMN) to Sm proteins. May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway.

Canis familiaris (taxid: 9615)

>sp|Q04753|ICLN_RAT Methylosome subunit pICln OS=Rattus norvegicus GN=Clns1a PE=2 SV=1

 Score =  105 bits (262), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/137 (45%), Positives = 88/137 (64%), Gaps = 6/137 (4%)

Query: 11  LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           L + P P     +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct: 4   LKSFPPPGSADGLRLQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 62

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKT 128
           +HA+SRD N + +E +Y+ V    +  G+ +     DE++DD+DD   + E R VP DK+
Sbjct: 63  LHAVSRDPNAYPQEHLYVMV---NARFGEESKEPFSDEDEDDNDDVEPISEFRFVPSDKS 119

Query: 129 ALEDIFMAMNQCQKLHP 145
           ALE +F AM +CQ LHP
Sbjct: 120 ALEAMFTAMCECQALHP 136

The interaction with Sm proteins inhibits their assembly on U RNA and interferes with snRNP biogenesis. Inhibits the binding of survival motor neuron protein (SMN) to Sm proteins. May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q61189|ICLN_MOUSE Methylosome subunit pICln OS=Mus musculus GN=Clns1a PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/137 (45%), Positives = 87/137 (63%), Gaps = 6/137 (4%)

Query: 11  LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           L + P P     +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct: 4   LKSFPPPGSADGLRLQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 62

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKT 128
           +HA+SRD N + +E +Y+ V  +  +E      D   E+++D+DD   + E R VP DK+
Sbjct: 63  LHAVSRDPNAYPQEHLYVMVNAKLGEESKEPPSD---EDEEDNDDIEPISEFRFVPSDKS 119

Query: 129 ALEDIFMAMNQCQKLHP 145
           ALE +F AM +CQ LHP
Sbjct: 120 ALEAMFTAMCECQALHP 136

The interaction with Sm proteins inhibits their assembly on U RNA and interferes with snRNP biogenesis. Inhibits the binding of survival motor neuron protein (SMN) to Sm proteins. May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway.

Mus musculus (taxid: 10090)

>sp|P54105|ICLN_HUMAN Methylosome subunit pICln OS=Homo sapiens GN=CLNS1A PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 3/131 (2%)

Query: 15  PEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISR 74
           P P+  +L Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I++HA+SR
Sbjct: 10  PGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTISLHALSR 68

Query: 75  DTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIF 134
           D +    E +Y+ V  +  +E      D  +EE+D DDD   + E R VP DK+ALE +F
Sbjct: 69  DRSDCLGEHLYVMVNAKFEEESKEPVAD--EEEEDSDDDVEPITEFRFVPSDKSALEAMF 126

Query: 135 MAMNQCQKLHP 145
            AM +CQ LHP
Sbjct: 127 TAMCECQALHP 137

The interaction with Sm proteins inhibits their assembly on U RNA and interferes with snRNP biogenesis. Inhibits the binding of survival motor neuron protein (SMN) to Sm proteins. May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway.

Homo sapiens (taxid: 9606)

>sp|Q5R719|ICLN_PONAB Methylosome subunit pICln OS=Pongo abelii GN=CLNS1A PE=2 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 3/131 (2%)

Query: 15  PEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISR 74
           P P+  +L Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I++HA+SR
Sbjct: 10  PGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTISLHALSR 68

Query: 75  DTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIF 134
           D +    E +Y+ V  +  +E      D  +EE+D DDD   + E R VP DK+ALE +F
Sbjct: 69  DRSDCLGEHLYVMVNAKFEEESKEPVAD--EEEEDSDDDVEPITEFRFVPSDKSALEAMF 126

Query: 135 MAMNQCQKLHP 145
            AM +CQ LHP
Sbjct: 127 TAMCECQALHP 137

The interaction with Sm proteins inhibits their assembly on U RNA and interferes with snRNP biogenesis. Inhibits the binding of survival motor neuron protein (SMN) to Sm proteins. May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway.

Pongo abelii (taxid: 9601)

>sp|Q9LVA7|ICLN_ARATH Chloride conductance regulatory protein ICln OS=Arabidopsis thaliana GN=At5g62290 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 8/138 (5%)

Query: 21  VLHQEPATTAYIENENLGT-GTLYIAESKLQW-TNSSSGLGFALEYPRITIHAISRDTNH 78
           ++H + +    + N  + + GTLYI   KL W ++     G+A+++  I++HA+SRD   
Sbjct: 29  LMHVQTSVAVALGNRPIESPGTLYITSRKLIWLSDVDMAKGYAVDFLSISLHAVSRDPEA 88

Query: 79  FAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMN 138
           ++  CIY Q+E E+ ++ +               D   + E+RLVP D T LE +F    
Sbjct: 89  YSSPCIYTQIEVEEDEDDESDSESTEVL------DLSKIREMRLVPSDSTQLETLFDVFC 142

Query: 139 QCQKLHPDPDQSPLSGNG 156
           +C +L+P+P Q     +G
Sbjct: 143 ECAELNPEPVQEEEEESG 160

May participate in cellular volume control by activation of a swelling-induced chloride conductance pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
241123255	216	chloride ion current inducer protein, pu	0.878	0.634	0.45	1e-28
346468547	194	hypothetical protein [Amblyomma maculatu	0.891	0.716	0.426	1e-27
346474060	219	hypothetical protein [Amblyomma maculatu	0.891	0.634	0.426	2e-27
321461713	188	hypothetical protein DAPPUDRAFT_308065 [	0.884	0.734	0.415	2e-27
432889663	247	PREDICTED: methylosome subunit pICln-lik	0.871	0.550	0.444	2e-27
410909616	247	PREDICTED: LOW QUALITY PROTEIN: methylos	0.878	0.554	0.448	1e-26
225706286	243	Methylosome subunit pICln [Osmerus morda	0.891	0.572	0.448	3e-26
427786857	198	Putative swelling dependent chloride cha	0.814	0.641	0.426	8e-26
1770220	249	swelling dependent chloride channel, ICl	0.903	0.566	0.466	2e-25
209736156	245	Methylosome subunit pICln [Salmo salar]	0.871	0.555	0.415	2e-25

>gi|241123255|ref|XP_002403840.1| chloride ion current inducer protein, putative [Ixodes scapularis] gi|215493543|gb|EEC03184.1| chloride ion current inducer protein, putative [Ixodes scapularis]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 94/140 (67%), Gaps = 3/140 (2%)

Query: 11  LSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIH 70
           L++ P P   + H+E AT AYI+   LG GTLYIAES++ W   +S  GF+LEYP + +H
Sbjct: 4   LTSFPPPEQGIRHREEATAAYIQRRELGKGTLYIAESRVSWVGENSA-GFSLEYPSVALH 62

Query: 71  AISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTAL 130
           A+SRD + F +EC+YL ++    DE +    + G +  +DDDDE +  EIR VP++K++L
Sbjct: 63  AVSRDLSSFPQECLYLMIDG-NLDEAEPTTNENGSDA-NDDDDEPAASEIRFVPENKSSL 120

Query: 131 EDIFMAMNQCQKLHPDPDQS 150
           + ++ AM++CQ LHPDP  S
Sbjct: 121 DAMYKAMSECQALHPDPTDS 140

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468547|gb|AEO34118.1| hypothetical protein [Amblyomma maculatum]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 11/150 (7%)

Query: 11  LSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIH 70
           L++ P P   + H+E AT A+I++  LG GTLYIAES++ W    S  GF+LEYP + +H
Sbjct: 4   LTSFPPPDEGIRHREEATAAFIQSRGLGKGTLYIAESRVSWVGQDSA-GFSLEYPSVALH 62

Query: 71  AISRDTNHFAEECIYLQVEREKSDEGD------GAGG----DIGDEEDDDDDDEGSMIEI 120
           A+SRD   F EEC+YL ++ +  +EG+      GA         +  ++ +DDE    EI
Sbjct: 63  ALSRDLRAFPEECLYLMIDGDLGEEGEPHPPVPGAAAYPSHCCPEPNENGEDDEQPASEI 122

Query: 121 RLVPQDKTALEDIFMAMNQCQKLHPDPDQS 150
           R VP+DK+ LE ++ AM +CQ LHPDP Q+
Sbjct: 123 RFVPEDKSHLEAMYQAMTECQALHPDPAQA 152

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346474060|gb|AEO36874.1| hypothetical protein [Amblyomma maculatum]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 11/150 (7%)

Query: 11  LSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIH 70
           L++ P P   + H+E AT A+I++  LG GTLYIAES++ W    S  GF+LEYP + +H
Sbjct: 4   LTSFPPPDEGIRHREEATAAFIQSRGLGKGTLYIAESRVSWVGQDSA-GFSLEYPSVALH 62

Query: 71  AISRDTNHFAEECIYLQVEREKSDEGD------GAGG----DIGDEEDDDDDDEGSMIEI 120
           A+SRD   F EEC+YL ++ +  +EG+      GA         +  ++ +DDE    EI
Sbjct: 63  ALSRDLRAFPEECLYLMIDGDLGEEGEPHPPVPGAAAYPSHCCPEPNENGEDDEQPASEI 122

Query: 121 RLVPQDKTALEDIFMAMNQCQKLHPDPDQS 150
           R VP+DK+ LE ++ AM +CQ LHPDP Q+
Sbjct: 123 RFVPEDKSHLEAMYQAMTECQALHPDPAQA 152

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321461713|gb|EFX72742.1| hypothetical protein DAPPUDRAFT_308065 [Daphnia pulex]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 97/142 (68%), Gaps = 4/142 (2%)

Query: 9   IPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           + LS+ P P+  +   +P T A+I   +LG GTLYIAES++ W +++SG GF+LEYP I+
Sbjct: 2   VVLSSFPPPTEGIKLVQPNTGAFINTRDLGQGTLYIAESRVSWVSATSGQGFSLEYPHIS 61

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKT 128
           +HA+S+D + F +EC+YL ++  + DE D A   + +++ +D++ E  M E+R +P+D+ 
Sbjct: 62  LHAVSKDPSAFPQECLYLMLDS-RLDEPDEA---LDNQDSEDEESETDMSEVRFIPEDRG 117

Query: 129 ALEDIFMAMNQCQKLHPDPDQS 150
            L+ ++ AM  CQ LHPDP+ S
Sbjct: 118 LLDAMYHAMTICQTLHPDPNDS 139

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432889663|ref|XP_004075300.1| PREDICTED: methylosome subunit pICln-like [Oryzias latipes]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 92/144 (63%), Gaps = 8/144 (5%)

Query: 9   IPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           + + NL  P+  V H+E  TTA +  + LG GTLY+AE++L W + S G+GF+LEYP I+
Sbjct: 2   VLVRNLRPPTEGVRHEEANTTAVLSGQQLGCGTLYVAETRLSWFDGS-GMGFSLEYPSIS 60

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDD-------DDEGSMIEIR 121
           +HAISRD + + EE +Y+ V  +   EG+    +   EE+DDD       D+E  + EIR
Sbjct: 61  LHAISRDVSAYPEEHLYVMVNGKLGGEGEAEMTEKAAEEEDDDGSDSSNGDEEEVITEIR 120

Query: 122 LVPQDKTALEDIFMAMNQCQKLHP 145
            VP+DK +LE +F AM +CQ LHP
Sbjct: 121 FVPRDKASLESMFSAMCECQALHP 144

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410909616|ref|XP_003968286.1| PREDICTED: LOW QUALITY PROTEIN: methylosome subunit pICln-like [Takifugu rubripes]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 94/145 (64%), Gaps = 8/145 (5%)

Query: 11  LSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIH 70
           L NL  P+  V H++P TT  ++ + LG+GTL++AE+ L W + S G+GF+LEYP I +H
Sbjct: 4   LKNLVPPTEGVRHEQPETTVEVDGQKLGSGTLFVAEAHLSWFDGS-GMGFSLEYPTIGLH 62

Query: 71  AISRDTNHFAEECIYLQVEREKSDEGDGAGGD--IGDEEDDDDD-----DEGSMIEIRLV 123
           AISRDT+ + +E +Y+ V  + SDE +    +   GDE D  +      D+G + E+R V
Sbjct: 63  AISRDTSAYPQEHLYVMVNGKLSDENEAEMTEKAAGDEADSGNSADDDDDDGVITEVRFV 122

Query: 124 PQDKTALEDIFMAMNQCQKLHPDPD 148
           P DK ALE +F AM +CQ LHPDP+
Sbjct: 123 PSDKAALESMFSAMCECQALHPDPE 147

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|225706286|gb|ACO08989.1| Methylosome subunit pICln [Osmerus mordax]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 99/145 (68%), Gaps = 6/145 (4%)

Query: 9   IPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           + L ++P PS  V H++  TTA ++ + LG+GTLY+AE++L W + S G+GF+LEYP I+
Sbjct: 2   VLLKSVPPPSEGVRHEQAETTAVLDGKGLGSGTLYVAETRLSWFDGS-GMGFSLEYPSIS 60

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDG-----AGGDIGDEEDDDDDDEGSMIEIRLV 123
           +HAISRD + + +E +Y+ V  + +D+ D      A  +   +E  DD+D G++ EIR V
Sbjct: 61  LHAISRDLSAYPQEHLYVMVNAKLNDDNDAEMVDDAQNEEDADESSDDEDSGAISEIRFV 120

Query: 124 PQDKTALEDIFMAMNQCQKLHPDPD 148
           P DK ALE++F AM +CQ LHPDP+
Sbjct: 121 PSDKAALENMFSAMCECQALHPDPE 145

Source: Osmerus mordax

Species: Osmerus mordax

Genus: Osmerus

Family: Osmeridae

Order: Osmeriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427786857|gb|JAA58880.1| Putative swelling dependent chloride channel icln strongylocentrotus purpuratus [Rhipicephalus pulchellus]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/143 (42%), Positives = 88/143 (61%), Gaps = 16/143 (11%)

Query: 9   IPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           + L++ P P   + H+E AT A+I++ +LG GTLYIAES++ W    S  GF+LEYP + 
Sbjct: 2   VILTSFPPPDEGIRHREEATAAFIQSRDLGKGTLYIAESRVSWVGQDSS-GFSLEYPSVA 60

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDI----GDEEDDDDDDEGSMIEIRLVP 124
           +HA+SRD   F EEC+YL ++           GD+     +  ++  DDE    EIR VP
Sbjct: 61  LHALSRDLRAFPEECLYLMID-----------GDLGEGEEESSENGQDDEQPASEIRFVP 109

Query: 125 QDKTALEDIFMAMNQCQKLHPDP 147
            DK+ LE ++ AM++CQ LHPDP
Sbjct: 110 DDKSHLEAMYKAMSECQALHPDP 132

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1770220|emb|CAA69718.1| swelling dependent chloride channel, ICln [Danio rerio]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 94/148 (63%), Gaps = 7/148 (4%)

Query: 9   IPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           + L +LP PS  V  Q+  TTA ++ + LG GTL++AE++L W + S G+GF LEYP I+
Sbjct: 2   VLLKSLPPPSEGVRLQQAETTAVLDGKRLGLGTLFVAEAQLSWFDGS-GMGFCLEYPTIS 60

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDGA------GGDIGDEEDDDDDDEGSMIEIRL 122
           +HAISRD + F EE +Y+ V  +  DEG+ A        +  DEED D +  G + EIR 
Sbjct: 61  LHAISRDLSAFPEEHLYVMVNAKLDDEGEAAPLEKDPDEEDEDEEDSDSESSGEITEIRF 120

Query: 123 VPQDKTALEDIFMAMNQCQKLHPDPDQS 150
           VP DK ALE +F AM  CQ LHPDP+ +
Sbjct: 121 VPSDKAALEPMFSAMCDCQALHPDPEHA 148

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|209736156|gb|ACI68947.1| Methylosome subunit pICln [Salmo salar] gi|209736966|gb|ACI69352.1| Methylosome subunit pICln [Salmo salar]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/142 (41%), Positives = 93/142 (65%), Gaps = 6/142 (4%)

Query: 9   IPLSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           + L ++P PS  V H++  T A ++ + LG GTLY+AE++L W + S G+GF+LEYP I+
Sbjct: 2   VLLRSVPPPSEGVRHEQAETMAVLDGKGLGAGTLYVAETRLSWFDGS-GMGFSLEYPTIS 60

Query: 69  IHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDD-----DDEGSMIEIRLV 123
           +HAISRD + + +E +Y+ V  + +DE +    +   +++D+D     D+   + EIR V
Sbjct: 61  LHAISRDFSTYPQEHLYVMVNTKLNDENEAEMQENAHDQEDEDNSSEEDESEGITEIRFV 120

Query: 124 PQDKTALEDIFMAMNQCQKLHP 145
           P+DK ALE +F AM +CQ LHP
Sbjct: 121 PRDKAALESMFSAMCECQALHP 142

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
RGD|61884	236	Clns1a "chloride channel, nucl	0.493	0.326	0.512	1.7e-25
ZFIN|ZDB-GENE-990415-259	249	icln "swelling dependent chlor	0.891	0.558	0.424	1.6e-24
UNIPROTKB|F1NYD4	241	CLNS1A "Uncharacterized protei	0.878	0.568	0.405	2e-24
UNIPROTKB|Q1LZ90	237	CLNS1A "Chloride channel, nucl	0.865	0.569	0.421	1.1e-23
UNIPROTKB|F1P8R1	235	CLNS1A "Methylosome subunit pI	0.852	0.565	0.414	1.4e-23
UNIPROTKB|P35521	235	CLNS1A "Methylosome subunit pI	0.852	0.565	0.414	1.4e-23
UNIPROTKB|F1STY9	242	CLNS1A "Uncharacterized protei	0.865	0.557	0.414	1.8e-23
UNIPROTKB|E9PJF4	179	CLNS1A "Methylosome subunit pI	0.839	0.731	0.425	2.9e-23
UNIPROTKB|P54105	237	CLNS1A "Methylosome subunit pI	0.839	0.552	0.425	2.9e-23
MGI|MGI:109638	236	Clns1a "chloride channel, nucl	0.858	0.567	0.428	2.9e-23

RGD|61884 Clns1a "chloride channel, nucleotide-sensitive, 1A" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query:    11 LSNLPEP-SGNVLH-QEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
             L + P P S + L  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct:     4 LKSFPPPGSADGLRLQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 62

Query:    69 IHAISRDTNHFAEECIYLQV 88
             +HA+SRD N + +E +Y+ V
Sbjct:    63 LHAVSRDPNAYPQEHLYVMV 82

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006821 "chloride transport" evidence=IEA;IDA

GO:0006884 "cell volume homeostasis" evidence=IEA;IMP

ZFIN|ZDB-GENE-990415-259 icln "swelling dependent chloride channel" [Danio rerio (taxid:7955)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 62/146 (42%), Positives = 82/146 (56%)

Query:    11 LSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIH 70
             L +LP PS  V  Q+  TTA ++ + LG GTL++AE++L W + S G+GF LEYP I++H
Sbjct:     4 LKSLPPPSEGVRLQQAETTAVLDGKRLGLGTLFVAEAQLSWFDGS-GMGFCLEYPTISLH 62

Query:    71 AISRDTNHFAEECIYLQV------EREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVP 124
             AISRD + F EE +Y+ V      E E +                       + EIR VP
Sbjct:    63 AISRDLSAFPEEHLYVMVNAKLDDEGEAAPLEKDPDEEDENEEDSDSEGSGEITEIRFVP 122

Query:   125 QDKTALEDIFMAMNQCQKLHPDPDQS 150
              DK ALE +F AM  CQ LHPDPD +
Sbjct:   123 SDKAALEPMFSAMCDCQALHPDPDDA 148

GO:0006821 "chloride transport" evidence=IEA

GO:0006884 "cell volume homeostasis" evidence=IEA

GO:0048675 "axon extension" evidence=IMP

UNIPROTKB|F1NYD4 CLNS1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 56/138 (40%), Positives = 76/138 (55%)

Query:    11 LSNLPEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIH 70
             L   P P   V H++P T A +   +LG GTLYIAES+L W  +S G+GF+L+YP I++H
Sbjct:     7 LKRFPPPDDGVRHRQPDTEAVLAGRSLGAGTLYIAESRLSWLENS-GVGFSLDYPTISLH 65

Query:    71 AISRDTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKTAL 130
             A+SRD N +  E +Y+ V                            + E R VP DK+AL
Sbjct:    66 AVSRDLNAYPWEHLYVMVNARFEEEETKEAPVAEGEEEDSDDDVEPIAEFRFVPSDKSAL 125

Query:   131 EDIFMAMNQCQKLHPDPD 148
             E +F AM +CQ LHPDP+
Sbjct:   126 EAMFSAMCECQALHPDPE 143

GO:0006821 "chloride transport" evidence=IEA

GO:0006884 "cell volume homeostasis" evidence=IEA

UNIPROTKB|Q1LZ90 CLNS1A "Chloride channel, nucleotide-sensitive, 1A" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 59/140 (42%), Positives = 78/140 (55%)

Query:    11 LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
             L + P P     +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct:     4 LRSFPPPGSAEGLRQQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 62

Query:    69 IHAISRDTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKT 128
             +HA+SRD N +  E +Y+ V  +                        S  E R VP DK+
Sbjct:    63 LHAVSRDLNAYPREHLYVMVNAKFGEESKESVADEEEEDSDDDIEPIS--EFRFVPSDKS 120

Query:   129 ALEDIFMAMNQCQKLHPDPD 148
             ALE +F AM +CQ LHPDP+
Sbjct:   121 ALEAMFTAMCECQALHPDPE 140

GO:0006884 "cell volume homeostasis" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

UNIPROTKB|F1P8R1 CLNS1A "Methylosome subunit pICln" [Canis lupus familiaris (taxid:9615)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 58/140 (41%), Positives = 78/140 (55%)

Query:    11 LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
             L + P P     +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct:     4 LKSFPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 62

Query:    69 IHAISRDTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKT 128
             +HA+SRD N +  E +Y+ V  +                         + E R VP DK+
Sbjct:    63 LHAVSRDLNAYPREHLYVMVNAK----FGEESKESVAEEEDSDDDVEPIAEFRFVPSDKS 118

Query:   129 ALEDIFMAMNQCQKLHPDPD 148
             ALE +F AM +CQ LHPDP+
Sbjct:   119 ALEAMFTAMCECQALHPDPE 138

GO:0006884 "cell volume homeostasis" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

UNIPROTKB|P35521 CLNS1A "Methylosome subunit pICln" [Canis lupus familiaris (taxid:9615)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 58/140 (41%), Positives = 78/140 (55%)

Query:    11 LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
             L + P P     +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct:     4 LKSFPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 62

Query:    69 IHAISRDTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKT 128
             +HA+SRD N +  E +Y+ V  +                         + E R VP DK+
Sbjct:    63 LHAVSRDLNAYPREHLYVMVNAK----FGEESKESVAEEEDSDDDVEPIAEFRFVPSDKS 118

Query:   129 ALEDIFMAMNQCQKLHPDPD 148
             ALE +F AM +CQ LHPDP+
Sbjct:   119 ALEAMFTAMCECQALHPDPE 138

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006884 "cell volume homeostasis" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

UNIPROTKB|F1STY9 CLNS1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 58/140 (41%), Positives = 78/140 (55%)

Query:    11 LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
             L + P P     +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct:     9 LRSFPPPGSAEGLRQQQPNTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 67

Query:    69 IHAISRDTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKT 128
             +HA+SRD N +  E +Y+ V  +                         + E R VP DK+
Sbjct:    68 LHAVSRDLNAYPREHLYVMVNAK--FGEELKESVADEEEEDSDDDIEPIAEFRFVPSDKS 125

Query:   129 ALEDIFMAMNQCQKLHPDPD 148
             ALE +F AM +CQ LHPDP+
Sbjct:   126 ALEAMFTAMCECQALHPDPE 145

GO:0006884 "cell volume homeostasis" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

UNIPROTKB|E9PJF4 CLNS1A "Methylosome subunit pICln" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 57/134 (42%), Positives = 77/134 (57%)

Query:    15 PEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISR 74
             P P+  +L Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I++HA+SR
Sbjct:    10 PGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTISLHALSR 68

Query:    75 DTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKTALEDIF 134
             D +    E +Y+ V  +                         + E R VP DK+ALE +F
Sbjct:    69 DRSDCLGEHLYVMVNAK--FEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKSALEAMF 126

Query:   135 MAMNQCQKLHPDPD 148
              AM +CQ LHPDP+
Sbjct:   127 TAMCECQALHPDPE 140

GO:0006821 "chloride transport" evidence=IEA

GO:0006884 "cell volume homeostasis" evidence=IEA

UNIPROTKB|P54105 CLNS1A "Methylosome subunit pICln" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 57/134 (42%), Positives = 77/134 (57%)

Query:    15 PEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISR 74
             P P+  +L Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I++HA+SR
Sbjct:    10 PGPAEGLLRQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTISLHALSR 68

Query:    75 DTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKTALEDIF 134
             D +    E +Y+ V  +                         + E R VP DK+ALE +F
Sbjct:    69 DRSDCLGEHLYVMVNAK--FEEESKEPVADEEEEDSDDDVEPITEFRFVPSDKSALEAMF 126

Query:   135 MAMNQCQKLHPDPD 148
              AM +CQ LHPDP+
Sbjct:   127 TAMCECQALHPDPE 140

GO:0006821 "chloride transport" evidence=IEA

GO:0006884 "cell volume homeostasis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0008015 "blood circulation" evidence=TAS

GO:0000387 "spliceosomal snRNP assembly" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0034660 "ncRNA metabolic process" evidence=TAS

MGI|MGI:109638 Clns1a "chloride channel, nucleotide-sensitive, 1A" [Mus musculus (taxid:10090)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 60/140 (42%), Positives = 81/140 (57%)

Query:    11 LSNLPEP-SGNVLH-QEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
             L + P P S + L  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct:     4 LKSFPPPGSADGLRLQQPDTEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 62

Query:    69 IHAISRDTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKT 128
             +HA+SRD N + +E +Y+ V  +                         + E R VP DK+
Sbjct:    63 LHAVSRDPNAYPQEHLYVMVNAKLGEESKEPPSDEDEEDNDDIE---PISEFRFVPSDKS 119

Query:   129 ALEDIFMAMNQCQKLHPDPD 148
             ALE +F AM +CQ LHPDP+
Sbjct:   120 ALEAMFTAMCECQALHPDPE 139

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006821 "chloride transport" evidence=ISO

GO:0006884 "cell volume homeostasis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
pfam03517	52	pfam03517, ICln_channel, Nucleotide-sensitive chlo	8e-19
cd13229	94	cd13229, PH_TFIIH, Transcription Factor II H (TFII	2e-06

>gnl|CDD|217597 pfam03517, ICln_channel, Nucleotide-sensitive chloride conductance regulator (ICln)

 Score = 74.6 bits (184), Expect = 8e-19
 Identities = 24/51 (47%), Positives = 34/51 (66%)

Query: 40 GTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVER 90
          GTL++  S+L W ++  G G ++ YP I++HAISRD   F   CIYLQ+E 
Sbjct: 1  GTLFVTSSRLIWWSNELGSGLSIPYPSISLHAISRDPEAFPRPCIYLQLEL 51

ICln is a ubiquitously expressed multi-functional protein that plays a critical role in regulating volume decrease in cells after cellular swelling. In plants, ICln induces Cl- currents, thus regulating Cl- homoeostasis in eukaryotes. Structurally, the fold resembles a pleckstrin homology fold, on of whose roles is to recruit and tether their host protein to the cell membrane; and although the surface charges of the ICln fold are not equivalent to those of the PH domain, ICln can be phosphorylated in vitro and the PH-nature of the domain may be the part involving it in the transposition from cytosol to cell membrane during cytotonic swelling. Length = 52

>gnl|CDD|241383 cd13229, PH_TFIIH, Transcription Factor II H (TFIIH) Pleckstrin homology (PH) domain

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 38 GTGTLYIAESKLQWT-NSSSGLGFALEYPRITIHAISRDTN 77
            GTLY++ES+L W  +       ++ Y  I    IS + +
Sbjct: 12 KDGTLYLSESRLTWKPSGGDSPPISIPYSDIKNQQISPEGS 52

The transcription factor II H (TFIIH) is one of the general transcription factors (GTFs) known to be a target of the transactivation domain (TAD) of p53. Human TFIIH and its homologous yeast counterpart (factor b) are composed of ten subunits that can be divided into two groups, the core TFIIH (XPB/Ssl2, p62/Tfb1, p52/Tfb2, p44/Ssl1, p34/Tfb4, and TTDA/Tfb5 in human/yeast) and the CAK complex (cdk7/Kin28, cyclin H/Ccl1, and MAT1/Tfb3). These two complexes are linked by the XPD/Rad3 subunit. The helicase activities of XPB and XPD are essential to the formation of the open complex during transcription initiation and the kinase activity of cdk7 phosphorylates the C-terminal domain (CTD) of the RNA Pol II largest subunit, enabling RNA Pol II to progress from the initiation phase to the elongation phase of transcription. The PH domain of p62/Tfb1 has been shown to interact with herpes simplex virus protein 16 (VP16) TAD and the binding of p53 TAD is mediated by the TAD2 subdomain. TFIIE recruits TFIIH to complete the preinitiation complex (PIC) formation and regulates enzymatic activities of TFIIH. The PH domain of the human TFIIH p62 subunit binds to the C-terminal acidic (AC) domain of the human TFIIEalpha subunit. This interaction could be a switch to replace p53 with TFIIE on TFIIH in transcription. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
KOG3238|consensus	216		100.0
PF03517	135	Voldacs: Regulator of volume decrease after cellul	100.0
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	97.06
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	96.52
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	96.5
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	96.39
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	95.15
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	94.26
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	92.09
KOG3294|consensus	261		89.05
PF14470	96	bPH_3: Bacterial PH domain	88.43

>KOG3238|consensus

Probab=100.00  E-value=2.8e-41  Score=270.31  Aligned_cols=138  Identities=43%  Similarity=0.757  Sum_probs=117.9

Q ss_pred             ecCcCCC--CCCCceEE-ecCCEEEEecCCCcceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecCCCCCCcceEE
Q psy9054           9 IPLSNLP--EPSGNVLH-QEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIY   85 (156)
Q Consensus         9 ~~l~~~~--~p~e~v~~-~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd~~~~p~~clY   85 (156)
                      ++.+.|+  +|.+|+++ +++|+++++|...+|+||||||+++|+|++.+-.+||+|.||+|+||||||+++.|+.+|||
T Consensus         2 ~L~~~~~~~~P~eg~l~~~t~n~~a~ln~kvlg~GTlYIa~s~LsWl~~~~akGfSvey~~IsLHaiSrdps~c~~~~ly   81 (216)
T KOG3238|consen    2 TLTMRFSSPPPAEGLLYTQTPNTKAVLNRKVLGTGTLYIAESTLSWLSTSGAKGFSVEYPTISLHAISRDPSDCLSEHLY   81 (216)
T ss_pred             eeEEecCCCCCccchhhccccchheeecCcccccceEEEecceEEeeecccccceeeecceeEEEeeeCChhhcchhhhe
Confidence            4556665  88999999 77799999999999999999999999999974459999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhhhhcCCCCCC
Q psy9054          86 LQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQKLHPDPDQ  149 (156)
Q Consensus        86 ~qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C~~LhPDp~d  149 (156)
                      .||+.+...+..+..   .+++++++++.+.++|+||||.|+++|++||.+||+||+|||+|++
T Consensus        82 ~~Ve~~~~e~~~~aa---~~eee~sdddve~i~e~rfvpsDk~~l~a~f~qfcecqel~p~P~E  142 (216)
T KOG3238|consen   82 VMVEWKFEESKEQAA---DEEEEDSDDDVEPITEFRFVPSDKSALEAMFTQFCECQELNPDPDE  142 (216)
T ss_pred             eeeeecccccccccc---cccccCccccccccccceecCCchhHHHHHHHHHHhhhhcCCCccc
Confidence            999987654211111   2234445567899999999999999999999999999999999933

>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation

Probab=100.00  E-value=8.6e-40  Score=249.08  Aligned_cols=111  Identities=47%  Similarity=0.944  Sum_probs=65.3

Q ss_pred             eEEEEecceEEEee-CCCCceEEEecCcEEEEEEecCCC-CCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy9054          40 GTLYIAESKLQWTN-SSSGLGFALEYPRITIHAISRDTN-HFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSM  117 (156)
Q Consensus        40 GtL~Vt~~~l~w~~-~~~~~G~si~YpsI~LHAIsrd~~-~~p~~clY~qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~  117 (156)
                      |+||||+++|+||+ .++++||+||||+|+||||+|+++ .+|+|||||||+.......   .++.+++++++++++..+
T Consensus         1 g~L~Vt~~~l~w~~~~~~~~G~~ipY~sI~lHAisr~~~~~~~~~~lY~qld~~~~~~~---~~~~~~~~~~~~~~~~~~   77 (135)
T PF03517_consen    1 GTLYVTESRLIWFSNEDSSKGFSIPYPSISLHAISRDPSGSFPEPCLYLQLDSDLEEDE---EGDDEDDEEDDEEDDESS   77 (135)
T ss_dssp             EEEEEETTEEEEEET--TTEEEEESS---SEEE--SS-S-S--S--EEEEEE----SS----SSS---S--S-S--S-SE
T ss_pred             CEEEEecCEEEEECCCcCCcceeecCCeEEEEEeecCCCCCCCCceEEEEEecccCccc---cccccccccccccccccc
Confidence            89999999999999 578999999999999999999998 9999999999997642110   111122223345667899


Q ss_pred             eEEEEEcCCcch--HHHHHHHHHhhhhcCCCCCCCCCC
Q psy9054         118 IEIRLVPQDKTA--LEDIFMAMNQCQKLHPDPDQSPLS  153 (156)
Q Consensus       118 ~Elr~vP~d~~~--l~~if~Ams~C~~LhPDp~d~d~~  153 (156)
                      +||||+|.++++  |++||+|||+||+|||||++++++
T Consensus        78 ~El~l~P~~~~~~~l~~if~Als~C~~LhPD~~deddd  115 (135)
T PF03517_consen   78 VELRLVPSDPSSDMLDEIFEALSECQELHPDPDDEDDD  115 (135)
T ss_dssp             EEEEEEES-HHH--HHHHHHHHHHHHH-----------
T ss_pred             eEEEEecCcccchHHHHHHHHHHHHHHhCCCCcccccc
Confidence            999999999988  999999999999999999966555

Initial studies proposed that ICln was itself a swelling-activated anion channel; however, further studies demonstrated that it is localised primarily to the cell cytoplasm. It has therefore been postulated that activation of cell volume regulation may involve reversible translocation of ICln from the cytoplasm, and its insertion into the plasma membrane. It is not resolved whether the anionic channel involved in cell volume regulation after cell-swelling comprises one or more subunits, and if it does, whether ICln is in fact one of them [].; GO: 0006821 chloride transport, 0006884 cell volume homeostasis; PDB: 1ZYI_A.

>smart00683 DM16 Repeats in sea squirt COS41

Probab=97.06  E-value=0.0029  Score=41.76  Aligned_cols=30  Identities=20%  Similarity=0.615  Sum_probs=24.6

Q ss_pred             eeEEEEecceEEEeeCC-CCceEEEecCcEE
Q psy9054          39 TGTLYIAESKLQWTNSS-SGLGFALEYPRIT   68 (156)
Q Consensus        39 ~GtL~Vt~~~l~w~~~~-~~~G~si~YpsI~   68 (156)
                      .|+|+||+-|++|++.. ...-+||||-.|.
T Consensus        20 ~G~l~VTNlRiiW~s~~~~~~NlSIgy~~i~   50 (55)
T smart00683       20 LGVFFVTNLRLVWHSDTNPRFNISVGYLQIT   50 (55)
T ss_pred             eeEEEEEeeEEEEEeCCCCceEEEEcceeEE
Confidence            89999999999999983 5566778876653

4, worm R01H10.6, fly CG1126 etc.

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=96.52  E-value=0.014  Score=51.12  Aligned_cols=96  Identities=16%  Similarity=0.399  Sum_probs=62.5

Q ss_pred             CCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecCCCCCCcceEEEEEecCCCCCC
Q psy9054          17 PSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEG   96 (156)
Q Consensus        17 p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~~~~~~   96 (156)
                      |.|.|.-+...|--.=.++.- -|+++||+=||+|+.+ .+..|.|.-|-|.+.+|.--.+-|. ++|.++.....    
T Consensus       153 p~E~v~~~~~gVwnls~dqGn-LGtfivTNvRiVW~A~-~ne~fNVSiPylqi~~i~ir~SKfG-~aLVieT~~~s----  225 (339)
T PF07289_consen  153 PQEQVYSRVNGVWNLSSDQGN-LGTFIVTNVRIVWFAD-MNESFNVSIPYLQIKSIRIRDSKFG-PALVIETSESS----  225 (339)
T ss_pred             CccEEeeccCCEEEcccCCCc-eeEEEEeeeEEEEEcc-CCccccccchHhhheeeeeeccccc-eEEEEEEeccC----
Confidence            566666666655543333332 6999999999999998 4555555555566777776556676 78988877431    


Q ss_pred             CCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHH
Q psy9054          97 DGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMN  138 (156)
Q Consensus        97 ~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams  138 (156)
                                       -.=+.-.|+-|.+  .|+.+|+-++
T Consensus       226 -----------------GgYVLGFRvDP~E--rL~~l~KEi~  248 (339)
T PF07289_consen  226 -----------------GGYVLGFRVDPEE--RLQELFKEIQ  248 (339)
T ss_pred             -----------------CcEEEEEEcCHHH--HHHHHHHHHH
Confidence                             1234557777763  6777766544

It consists of eukaryotic proteins of around 375 residues in length.

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=96.50  E-value=0.0077  Score=43.10  Aligned_cols=57  Identities=25%  Similarity=0.449  Sum_probs=41.1

Q ss_pred             CCCCCCceEEecCCEEEEecCCC---cceeEEEEecceEEEeeCC--CCceEEEecCcEEEE
Q psy9054          14 LPEPSGNVLHQEPATTAYIENEN---LGTGTLYIAESKLQWTNSS--SGLGFALEYPRITIH   70 (156)
Q Consensus        14 ~~~p~e~v~~~~~~~~l~~~~~~---~g~GtL~Vt~~~l~w~~~~--~~~G~si~YpsI~LH   70 (156)
                      +..|.|.+.+.|.+|-||-++.-   .-.|+||+|+.||+|.+..  ....++|+-..|.--
T Consensus         9 ~L~~~E~~~~~q~~V~LYdG~~K~~~~q~G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~   70 (89)
T PF11605_consen    9 VLEPNETIVYQQDGVGLYDGDQKTPNFQNGRLYLTSHRLIWVDDSDPSKHSIALPLSLISHI   70 (89)
T ss_dssp             ---TT--EEEEEEEEEEEETTECSTT-SCEEEEEESSEEEEEESSGHCHH-EEEEGGGEEEE
T ss_pred             ccCCCceEEEEecCeeeEcCCccCccccCCEEEEEeeEEEEEcCCCCceeEEEEEchHeEEE
Confidence            34579999999999999999844   4699999999999999872  223677777776654

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=96.39  E-value=0.021  Score=39.89  Aligned_cols=49  Identities=22%  Similarity=0.343  Sum_probs=39.3

Q ss_pred             eeEEEEecce--EEEeeCCC--CceEEEecCcEEEEEEecCCCCCCcceEEEEEecC
Q psy9054          39 TGTLYIAESK--LQWTNSSS--GLGFALEYPRITIHAISRDTNHFAEECIYLQVERE   91 (156)
Q Consensus        39 ~GtL~Vt~~~--l~w~~~~~--~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~   91 (156)
                      .|+|+|++.+  +.|.....  ...++|+|..|.-+=++...+    +-+-+||-..
T Consensus        13 ~G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s----~Kv~Lki~~~   65 (79)
T PF08567_consen   13 DGTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGS----PKVMLKIVLK   65 (79)
T ss_dssp             EEEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTS----STEEEEEEET
T ss_pred             CcEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCC----cceEEEEEEe
Confidence            5999999999  99998733  235999999999999999865    7788888765

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=95.15  E-value=0.065  Score=35.43  Aligned_cols=54  Identities=20%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             CCCCCCCceEEecCCEEEEecC-CCcceeEEEEecceEEEeeCCCC--c-eEEEecCcEE
Q psy9054          13 NLPEPSGNVLHQEPATTAYIEN-ENLGTGTLYIAESKLQWTNSSSG--L-GFALEYPRIT   68 (156)
Q Consensus        13 ~~~~p~e~v~~~~~~~~l~~~~-~~~g~GtL~Vt~~~l~w~~~~~~--~-G~si~YpsI~   68 (156)
                      .|.-|.++.+...  ....+.. ...-.|+||||+.+|.|.+...+  . -+.||+..|.
T Consensus         6 ~F~lp~~E~li~~--~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~   63 (69)
T PF02893_consen    6 LFKLPEEERLIEE--YSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIK   63 (69)
T ss_dssp             -----TT--EEEE--EEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEE
T ss_pred             cccCCCCCeEEEE--EEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHhee
Confidence            3444544433333  2333333 44569999999999999995232  2 6889988874

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=94.26  E-value=0.28  Score=31.51  Aligned_cols=40  Identities=20%  Similarity=0.404  Sum_probs=26.4

Q ss_pred             EEEEecCCCcceeEEEEecceEEEeeCCCCc---eEEEecCcE
Q psy9054          28 TTAYIENENLGTGTLYIAESKLQWTNSSSGL---GFALEYPRI   67 (156)
Q Consensus        28 ~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~---G~si~YpsI   67 (156)
                      -...+.....-.|+||||+.+|.|.+...+.   -+.||+..|
T Consensus        12 ~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I   54 (61)
T smart00568       12 YSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADI   54 (61)
T ss_pred             EEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHe
Confidence            3334434444599999999999999963332   456665554

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=92.09  E-value=2.3  Score=37.46  Aligned_cols=74  Identities=15%  Similarity=0.273  Sum_probs=45.8

Q ss_pred             CCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeC-CCCceEEEecCcEEEEEEecCCC--CCCcceEEEEEecC
Q psy9054          17 PSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNS-SSGLGFALEYPRITIHAISRDTN--HFAEECIYLQVERE   91 (156)
Q Consensus        17 p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~-~~~~G~si~YpsI~LHAIsrd~~--~~p~~clY~qld~~   91 (156)
                      |.|.++-+...|+-.=+... -.|+|+||+-|++|.+. .....++|-|..|.==-+....+  ...-++||+.-..+
T Consensus        21 ~GE~~i~~~~~VEDtKGN~G-~~G~l~vTNLR~iW~s~~~~r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~   97 (339)
T PF07289_consen   21 PGEFIIDRLDPVEDTKGNNG-DRGRLVVTNLRLIWHSLKRPRINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN   97 (339)
T ss_pred             cceEEEEeeeceeeccCCCC-CeeEEEEEeeeeEEeccCCCceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC
Confidence            56666655555544332222 29999999999999998 34567777777764322221111  22457899887743

It consists of eukaryotic proteins of around 375 residues in length.

>KOG3294|consensus

Probab=89.05  E-value=0.73  Score=38.92  Aligned_cols=107  Identities=13%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             CCceEEecCCEEEEecCCCc------c--eeEEEEecceEEEeeCCCC---ceEEEecCcEEEEEEecCCCCCCcceEEE
Q psy9054          18 SGNVLHQEPATTAYIENENL------G--TGTLYIAESKLQWTNSSSG---LGFALEYPRITIHAISRDTNHFAEECIYL   86 (156)
Q Consensus        18 ~e~v~~~~~~~~l~~~~~~~------g--~GtL~Vt~~~l~w~~~~~~---~G~si~YpsI~LHAIsrd~~~~p~~clY~   86 (156)
                      .|-++...++|++.++....      |  +|+||+|+-||+|++..+.   +.|.+++  -.||++.=..-.|.-.+|==
T Consensus        19 ~E~i~~~~dgVeltf~~~~~~~~~~~g~kkGtlyLTs~RiIFis~~~~D~fksF~MPf--~~mkd~klnQPvF~aNyikG   96 (261)
T KOG3294|consen   19 GESILLVYDGVELTFDKMPNVSEAFKGTKKGTLYLTSHRIIFISSKPKDAFKSFMMPF--NLMKDVKLNQPVFGANYIKG   96 (261)
T ss_pred             CcEEEEeeCCeEEEeeccCCCccccccceeeeEEeecceEEEecCCCCcchhhhcchh--hhhhhceecCcccccceeee
Confidence            67788889999999877443      2  8999999999999998422   4455555  45677776555555444433


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcc---hHHHHHHHHHhhhhcC
Q psy9054          87 QVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKT---ALEDIFMAMNQCQKLH  144 (156)
Q Consensus        87 qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~---~l~~if~Ams~C~~Lh  144 (156)
                      ++..-..          |        .-+...+.||.-..-.   -.+.|-+|.+..+..-
T Consensus        97 tV~pvpg----------G--------g~~g~as~Kl~F~~GG~ieFgq~~l~~~s~a~r~r  139 (261)
T KOG3294|consen   97 TVQPVPG----------G--------GWEGEASFKLTFNEGGCIEFGQLLLQAASRASRGR  139 (261)
T ss_pred             eEeecCC----------C--------CccceeEEEEEecCCCchhHHHHHHHHHHHHHhcc
Confidence            3432210          1        1234456777776643   4567777777766443

>PF14470 bPH_3: Bacterial PH domain

Probab=88.43  E-value=2.1  Score=29.24  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=24.9

Q ss_pred             CcceeEEEEecceEEEeeCC---CCceEEEecCcEE
Q psy9054          36 NLGTGTLYIAESKLQWTNSS---SGLGFALEYPRIT   68 (156)
Q Consensus        36 ~~g~GtL~Vt~~~l~w~~~~---~~~G~si~YpsI~   68 (156)
                      ....|.|++|++||+++...   ...-.+++|..|.
T Consensus        20 ~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~   55 (96)
T PF14470_consen   20 TSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDIT   55 (96)
T ss_pred             cCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheE
Confidence            45699999999999999873   2345677777664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
1zyi_A	171	Solution Structure Of Icln, A Multifunctional Prote		3e-23
4f7u_Q	129	Macromolecular Machine 6 Length = 129		2e-05
1vu2_G	186	The 8s Snrnp Assembly Intermediate Length = 186		4e-05

>pdb|1ZYI|A Chain A, Solution Structure Of Icln, A Multifunctional Protein Involved In Regulatory Mechanisms As Different As Cell Volume Regulation And Rna Splicing Length = 171

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 7/137 (5%)
Query: 11  LSNLPEPSG--NVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRIT 68
           L + P P     +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I+
Sbjct: 13  LKSFPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTIS 71
Query: 69  IHAISRDTNHFAEECIYLQVEREKSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKT 128
           +HA+SRD N +  E +Y+ V    +                       + E R VP DK+
Sbjct: 72  LHAVSRDLNAYPREHLYVMV----NAKFGEESKESVAEEEDSDDDVEPIAEFRFVPSDKS 127
Query: 129 ALEDIFMAMNQCQKLHP 145
           ALE +F AM +CQ LHP
Sbjct: 128 ALEAMFTAMCECQALHP 144

>pdb|4F7U|Q Chain Q, Macromolecular Machine 6 Length = 129

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 13/107 (12%)
Query: 37  LGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSXXX 96
           +G GT+YIA++ L W  +    G ++E+ ++++H IS +      +CIY  ++ +     
Sbjct: 30  VGEGTVYIAQNTLSWQPTELAEGISIEWKQVSLHGISSN----PRKCIYFMLDHK----- 80
Query: 97  XXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKTALEDIFMAMNQCQKL 143
                               + E  L+P+D   ++ ++ AM  CQ L
Sbjct: 81  ----VEWNGVYGDVDEQFGEVTECWLMPEDIATVDTMYSAMTTCQAL 123

>pdb|1VU2|G Chain G, The 8s Snrnp Assembly Intermediate Length = 186

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 31/137 (22%)
Query: 37  LGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEECIYLQVERE----- 91
           +G GT+YIA++ L W  +    G ++E+ ++++H IS +      +CIY  ++ +     
Sbjct: 30  VGEGTVYIAQNTLSWQPTELAEGISIEWKQVSLHGISSN----PRKCIYFMLDHKVEWNG 85
Query: 92  ----------------------KSXXXXXXXXXXXXXXXXXXXXXXSMIEIRLVPQDKTA 129
                                                          + E  L+P+D   
Sbjct: 86  VYGDPPQQAVNGRNGGGSEAEVDEGNGSDEHDEDDNFEDAVDEQFGEVTECWLMPEDIHT 145
Query: 130 LEDIFMAMNQCQKLHPD 146
           ++ ++ AM  CQ LHPD
Sbjct: 146 VDTMYSAMTTCQALHPD 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1zyi_A	171	Methylosome subunit picln; PH domain, cell volume	4e-35

>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris} Length = 171

 Score =  119 bits (298), Expect = 4e-35
 Identities = 63/136 (46%), Positives = 86/136 (63%), Gaps = 5/136 (3%)

Query: 15  PEPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISR 74
           P  +  +  Q+P T A +  + LGTGTLYIAES+L W + S GLGF+LEYP I++HA+SR
Sbjct: 19  PGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDGS-GLGFSLEYPTISLHAVSR 77

Query: 75  DTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIF 134
           D N +  E +Y+ V  +  +E   +      EE+D DDD   + E R VP DK+ALE +F
Sbjct: 78  DLNAYPREHLYVMVNAKFGEESKESV----AEEEDSDDDVEPIAEFRFVPSDKSALEAMF 133

Query: 135 MAMNQCQKLHPDPDQS 150
            AM +CQ LHPDP+  
Sbjct: 134 TAMCECQALHPDPEDE 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
1zyi_A	171	Methylosome subunit picln; PH domain, cell volume	100.0
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	97.74
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	97.41
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	93.51
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	90.37
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	88.44
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	86.29
3hsa_A	126	Pleckstrin homology domain; YP_926556.1, structura	80.35

>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}

Probab=100.00  E-value=2.3e-52  Score=329.05  Aligned_cols=143  Identities=45%  Similarity=0.811  Sum_probs=101.8

Q ss_pred             eeeecCcCCCCCC--CceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCceEEEecCcEEEEEEecCCCCCCcce
Q psy9054           6 FQSIPLSNLPEPS--GNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLGFALEYPRITIHAISRDTNHFAEEC   83 (156)
Q Consensus         6 ~~~~~l~~~~~p~--e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G~si~YpsI~LHAIsrd~~~~p~~c   83 (156)
                      ..|-+|++|+||+  |+|+|++++|++++++..+|+|+||||++||+|++. +++||+|+||+|+||||||++++||+||
T Consensus         8 ~~~~~~~~~~~p~~~E~v~~~~~~v~~vl~~~~~g~GtLyVt~~~l~W~~~-~~~G~sI~YpsIsLHAIsrd~~~~p~~c   86 (171)
T 1zyi_A            8 LEMSFLKSFPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYIAESRLSWLDG-SGLGFSLEYPTISLHAVSRDLNAYPREH   86 (171)
T ss_dssp             -------------------CBCSSEEEEBTTBCCCEEEEEEETTEEEEEET-TTEEEEESSCCCSEEECCSSCSSCCSCC
T ss_pred             eehhhcccCCCCCCccceEEEcCCEEEEECCCccCceEEEEEcCEEEEEcC-CCcEEEeecCeEEEEEEecCCCCCCCce
Confidence            4678999999998  999999999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhhhhcCCCCCCCCCC
Q psy9054          84 IYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQKLHPDPDQSPLS  153 (156)
Q Consensus        84 lY~qld~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C~~LhPDp~d~d~~  153 (156)
                      |||||+....+.... +   .++++++|++++.++||||+|.++++|++||+|||+||+|||||++++++
T Consensus        87 lY~Qld~~~~~~~~~-~---~~e~~~~Dde~~~~~EirlvP~d~s~l~~if~Ams~Cq~LhPDp~d~d~d  152 (171)
T 1zyi_A           87 LYVMVNAKFGEESKE-S---VAEEEDSDDDVEPIAEFRFVPSDKSALEAMFTAMCECQALHPDPEDEDSD  152 (171)
T ss_dssp             EEEEEECCCCSSCSS-S---CCCSCCSSCCSCSEEEEEEEESCHHHHHHHHHHHHHHHHC----------
T ss_pred             EEEEEecccCccccc-c---ccccccccccccceeEEEEeCCCccHHHHHHHHHHHHHHcCCCccccccc
Confidence            999999876542111 0   11222344555779999999999999999999999999999999887765

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=97.74  E-value=0.0029  Score=47.48  Aligned_cols=113  Identities=13%  Similarity=0.185  Sum_probs=76.5

Q ss_pred             CCCCCceEEecCCEEEEecCCC--cceeEEEEecceEEEeeCC-CCceEEEecCcEEEEEEecCCCCCCcceEEEEEecC
Q psy9054          15 PEPSGNVLHQEPATTAYIENEN--LGTGTLYIAESKLQWTNSS-SGLGFALEYPRITIHAISRDTNHFAEECIYLQVERE   91 (156)
Q Consensus        15 ~~p~e~v~~~~~~~~l~~~~~~--~g~GtL~Vt~~~l~w~~~~-~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~   91 (156)
                      ..|.|.+++.+++|.|+.++..  .-.|+||+|+.||+|.+.. ....|+||...|.-=-+... .-+..+-|=+++...
T Consensus        13 L~~~E~il~~~~~V~Ly~g~~k~~~k~G~l~LTshRli~~d~~~~~~s~~lpl~~v~~~e~~~~-~f~~s~Ki~l~l~~~   91 (140)
T 2hth_B           13 LEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAA-GIGKSAKIVVHLHPA   91 (140)
T ss_dssp             CCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECC-TTSSCCEEEEEECCC
T ss_pred             cCCCceEEEEcCCEEEecCCCCCCCcCCEEEEecCEEEEecCCCCceEEEEEhHHeeeeeeecc-ccccCceEEEEecCC
Confidence            4689999999999999998854  4599999999999999873 45789999998875555432 112346666777753


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhhh
Q psy9054          92 KSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQ  141 (156)
Q Consensus        92 ~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C~  141 (156)
                      ...  +. .   +.      ..-+....++|+-..... .+.|++|.++.
T Consensus        92 ~~~--~~-~---gp------~~~s~~~~~kLsFr~Gg~-~eF~~~L~~al  128 (140)
T 2hth_B           92 PPN--KE-P---GP------FQSSKNSYIKLSFKEHGQ-IEFYRRLSEEM  128 (140)
T ss_dssp             CCC--SS-S---CC------CSTTSCCEEEEEETTSCH-HHHHHHHHHHH
T ss_pred             Ccc--CC-C---CC------cccccCcEEEEEEcCCCC-hHHHHHHHHHH
Confidence            211  00 0   10      011223457787776655 77888887764

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=97.41  E-value=0.00031  Score=53.30  Aligned_cols=104  Identities=10%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             CCCCCCceEEecCCEEEEecCCC---cceeEEEEecceEEEeeCCCC--ceEEEecCcEEEEEEecCCCCCCcceEEEEE
Q psy9054          14 LPEPSGNVLHQEPATTAYIENEN---LGTGTLYIAESKLQWTNSSSG--LGFALEYPRITIHAISRDTNHFAEECIYLQV   88 (156)
Q Consensus        14 ~~~p~e~v~~~~~~~~l~~~~~~---~g~GtL~Vt~~~l~w~~~~~~--~G~si~YpsI~LHAIsrd~~~~p~~clY~ql   88 (156)
                      +..|.|.+++.+++|.++.++..   .-.|+||+|+.||+|.+....  +.|++|...|.==-+.... -...+.+=+++
T Consensus        24 ~L~~~E~il~~~d~V~Ly~g~~k~~~~k~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~-fg~s~Ki~l~~  102 (145)
T 2cay_A           24 LLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRSPRLILFF  102 (145)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSSCEEEEEE
T ss_pred             ccCCCCEEEEEcCCcceecCCCCCcCCCccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCc-cccCceEEEEe
Confidence            34679999999999999999844   359999999999999987332  6799998887654443221 11245666777


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhhh
Q psy9054          89 EREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQCQ  141 (156)
Q Consensus        89 d~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C~  141 (156)
                      ...  +                    ....+++|+-.+... .+.+++|.++.
T Consensus       103 ~p~--~--------------------~~~~~~KLsFk~GGa-~eF~~~l~~al  132 (145)
T 2cay_A          103 KDP--S--------------------SSTEFVQLSFRKSDG-VLFSQATERAL  132 (145)
T ss_dssp             SSC--S--------------------STTCCEEEEESSSCC-HHHHHHHHHHH
T ss_pred             cCC--C--------------------CCceEEEEEEcCCCc-hHHHHHHHHHH
Confidence            643  1                    111247777776655 55777776654

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=93.51  E-value=0.28  Score=35.47  Aligned_cols=50  Identities=22%  Similarity=0.414  Sum_probs=39.7

Q ss_pred             ceeEEEEecceEEEeeC-CCCceEEEecCcEEEEEEecCCCCCCcceEEEEEecC
Q psy9054          38 GTGTLYIAESKLQWTNS-SSGLGFALEYPRITIHAISRDTNHFAEECIYLQVERE   91 (156)
Q Consensus        38 g~GtL~Vt~~~l~w~~~-~~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~   91 (156)
                      ..|+||+++.+|.|.+. .....+++.|..|.--=||....    +-+-+||-..
T Consensus        20 ~dGtL~l~~d~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k----~KVqLqi~l~   70 (108)
T 1pfj_A           20 QDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK----AKIQLQLVLH   70 (108)
T ss_dssp             CBCEEEEETTEEEEECSSSSSCSEEEETTTCCCEEECCSSS----SSCEEEEECS
T ss_pred             CCceEEEEcceEEEccCCCCCceEEEehhhhhcceeCCCCC----ccEEEEEEEe
Confidence            35999999999999996 33455888999999877777653    7788888865

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=90.37  E-value=0.051  Score=49.24  Aligned_cols=51  Identities=6%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             eeeeecCcC----CCCCCCceEEecCCEEEEecCCC---cceeEEEEecceEEEeeCC
Q psy9054           5 TFQSIPLSN----LPEPSGNVLHQEPATTAYIENEN---LGTGTLYIAESKLQWTNSS   55 (156)
Q Consensus         5 ~~~~~~l~~----~~~p~e~v~~~~~~~~l~~~~~~---~g~GtL~Vt~~~l~w~~~~   55 (156)
                      .+|.+.++.    +.-|.|.+++.|++|-||-+..-   .-.|.+|+|+.||+|++..
T Consensus         3 ~~~~~~~t~s~rp~L~~~E~~l~vqd~VgLY~Gk~Ki~~~q~G~~yLTShRiiyvD~~   60 (566)
T 1w7p_D            3 YWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA   60 (566)
T ss_dssp             ----------------------------------------------------------
T ss_pred             ccccccccccCCcccCCCceEEEeecccccccCCcCCccccCceEEEEeeeEEEecCC
Confidence            345555443    33458999999999999999844   4699999999999999874

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=88.44  E-value=3  Score=37.40  Aligned_cols=52  Identities=15%  Similarity=0.115  Sum_probs=34.9

Q ss_pred             CCCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCce--EEEecCcE
Q psy9054          16 EPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLG--FALEYPRI   67 (156)
Q Consensus        16 ~p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G--~si~YpsI   67 (156)
                      -|+|.|.....+|..+-.-..--.|+||||+-+|+|.+.+....  +.||+..|
T Consensus        10 LpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I   63 (528)
T 1zsq_A           10 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVI   63 (528)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGE
T ss_pred             CCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccce
Confidence            36888888877777542222234899999999999999744333  44444444

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=86.29  E-value=4.9  Score=36.99  Aligned_cols=52  Identities=15%  Similarity=0.104  Sum_probs=35.5

Q ss_pred             CCCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCc--eEEEecCcE
Q psy9054          16 EPSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGL--GFALEYPRI   67 (156)
Q Consensus        16 ~p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~--G~si~YpsI   67 (156)
                      -|+|.|.....+|...-....--.|+||||+-+|+|.+.+...  -+.||+..|
T Consensus        82 LPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I  135 (657)
T 1lw3_A           82 LPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVI  135 (657)
T ss_dssp             CTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGE
T ss_pred             CCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccce
Confidence            4589999888888753222222489999999999999874332  345555444

>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A*

Probab=80.35  E-value=15  Score=26.94  Aligned_cols=77  Identities=10%  Similarity=0.158  Sum_probs=47.5

Q ss_pred             eEEEEecceEEEeeCC--CC---ceEEEecCcEEEEEEecCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCC
Q psy9054          40 GTLYIAESKLQWTNSS--SG---LGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDE  114 (156)
Q Consensus        40 GtL~Vt~~~l~w~~~~--~~---~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~~~~~~~~~~gd~~~e~ed~d~e~  114 (156)
                      ..+..|++||+..+..  ++   .=.+|||.+|+--++-....-....-|-+-+...                      .
T Consensus        43 D~~iFTnkRLI~vD~QG~TGkK~~~~siPY~sI~~~siETAG~fDlDaElki~isg~----------------------~  100 (126)
T 3hsa_A           43 DLFVFTSXRLILIDXQGVTGXXVSYHSIPYXAIVHFQVETAGTFDMDAELXLWISGQ----------------------H  100 (126)
T ss_dssp             EEEEEESSEEEEEEEESTTSCEEEEEEEEGGGEEEEEEEEESTTSCEEEEEEEETTC----------------------S
T ss_pred             ceEEEccchheEEecCcCcccceEEEEeccceeeEEEEeccccccCCceEEEEEcCC----------------------c
Confidence            6677899999999962  22   2379999999888877654311112233333211                      0


Q ss_pred             CceeEEEEEcCCcchHHHHHHHHHhhh
Q psy9054         115 GSMIEIRLVPQDKTALEDIFMAMNQCQ  141 (156)
Q Consensus       115 ~~~~Elr~vP~d~~~l~~if~Ams~C~  141 (156)
                      .+ .++.|  .....+..+|++|+++-
T Consensus       101 ~p-i~~~f--~k~~di~~i~k~La~~v  124 (126)
T 3hsa_A          101 EP-LVXEL--XRGTDVVGIQXTIARYA  124 (126)
T ss_dssp             SC-EEEEE--CTTSCHHHHHHHHHHHH
T ss_pred             eE-EEEec--cCcccHHHHHHHHHHHh
Confidence            11 33433  44567999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d2rnrb1	108	b.55.1.9 (B:1-108) TFIIH basal transcription facto	3e-04

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 40 GTLYIAESKLQWT-NSSSGLGFALEYPRITIHAISRDTN 77
          G LY+   ++ W          +  Y  I    IS +  
Sbjct: 22 GALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	97.59
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	97.32
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	96.89
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	95.83
d3dcxa1	116	Uncharacterized protein Shew0819 {Shewanella loihi	85.29

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00011  Score=52.73  Aligned_cols=115  Identities=15%  Similarity=0.215  Sum_probs=73.3

Q ss_pred             cCCCCCCCceEEecCCEEEEecCCCc--ceeEEEEecceEEEeeC-CCCceEEEecCcEEEEEEecCCCCCCcceEEEEE
Q psy9054          12 SNLPEPSGNVLHQEPATTAYIENENL--GTGTLYIAESKLQWTNS-SSGLGFALEYPRITIHAISRDTNHFAEECIYLQV   88 (156)
Q Consensus        12 ~~~~~p~e~v~~~~~~~~l~~~~~~~--g~GtL~Vt~~~l~w~~~-~~~~G~si~YpsI~LHAIsrd~~~~p~~clY~ql   88 (156)
                      +.+..|.|.+++.+++|.+|-++...  -.|+||+|+.||+|.+. +....|+||+..|.-.-+.-. .-+..+-|=+.+
T Consensus         6 ~~ll~~~E~~l~~~~~V~lydG~~k~~~~~G~l~LTthRli~~~~~~~~~s~~lpl~~i~~~e~~~~-~fg~s~ki~l~l   84 (129)
T d2hthb1           6 SGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIEEQAA-GIGKSAKIVVHL   84 (129)
T ss_dssp             CSCCCTTCCEEEEEEEEEEEETTCSSCCCCEEEEEESSEEEEEETTCCSCCEEEEGGGEEEEEEECC-TTSSCCEEEEEE
T ss_pred             cCCCCCCcEEEEEeCCEEeecCCCcccccceEEEEEeceEEEecCCCCceEEEEEhHHceeeeEEcc-cccCCceEEEEE
Confidence            34567899999999999999877554  47999999999999987 456789999999854444322 212233444444


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCCCCCceeEEEEEcCCcchHHHHHHHHHhh
Q psy9054          89 EREKSDEGDGAGGDIGDEEDDDDDDEGSMIEIRLVPQDKTALEDIFMAMNQC  140 (156)
Q Consensus        89 d~~~~~~~~~~~gd~~~e~ed~d~e~~~~~Elr~vP~d~~~l~~if~Ams~C  140 (156)
                      -.....  .    ..+      .........++|+-..-.. .+.+++|.++
T Consensus        85 ~~~~~~--~----~~g------p~~~s~~~~~KLsFk~GG~-~eF~~~l~~a  123 (129)
T d2hthb1          85 HPAPPN--K----EPG------PFQSSKNSYIKLSFKEHGQ-IEFYRRLSEE  123 (129)
T ss_dssp             CCCCCC--S----SSC------CCSTTSCCEEEEEETTSCH-HHHHHHHHHH
T ss_pred             ccCCcC--C----cCC------CcCcCCceEEEEEECCCCH-HHHHHHHHHH
Confidence            332110  0    000      0112234467777777554 4577777665

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=0.00018  Score=51.99  Aligned_cols=75  Identities=8%  Similarity=0.163  Sum_probs=54.2

Q ss_pred             CCCCCceEEecCCEEEEecCCCc---ceeEEEEecceEEEeeCC--CCceEEEecCcEEEEEEecCCCCCCcceEEEEEe
Q psy9054          15 PEPSGNVLHQEPATTAYIENENL---GTGTLYIAESKLQWTNSS--SGLGFALEYPRITIHAISRDTNHFAEECIYLQVE   89 (156)
Q Consensus        15 ~~p~e~v~~~~~~~~l~~~~~~~---g~GtL~Vt~~~l~w~~~~--~~~G~si~YpsI~LHAIsrd~~~~p~~clY~qld   89 (156)
                      ..|+|.+++.+++|.++.++...   ..|+||+|+.||+|++..  +.+.|++|...|.=--++. +--...|-|=+|+.
T Consensus        17 L~~~E~~l~~qd~V~Ly~g~~k~~~~~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~-~~~~ss~KI~l~l~   95 (130)
T d2caya1          17 LREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSS-GFLTRSPRLILFFK   95 (130)
T ss_dssp             CCTTCCEEEEEEEEEEEETTEECTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEEC-SSSSSSCEEEEEES
T ss_pred             ccCCeEEEEEeCCEEEEECCccCccccCceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEc-cccCCCCeEEEEeC
Confidence            34689999999999999997544   599999999999999973  2357999998874333322 11112466777776


Q ss_pred             c
Q psy9054          90 R   90 (156)
Q Consensus        90 ~   90 (156)
                      .
T Consensus        96 ~   96 (130)
T d2caya1          96 D   96 (130)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0014  Score=45.80  Aligned_cols=50  Identities=22%  Similarity=0.421  Sum_probs=40.9

Q ss_pred             ceeEEEEecceEEEeeCCCC-ceEEEecCcEEEEEEecCCCCCCcceEEEEEecC
Q psy9054          38 GTGTLYIAESKLQWTNSSSG-LGFALEYPRITIHAISRDTNHFAEECIYLQVERE   91 (156)
Q Consensus        38 g~GtL~Vt~~~l~w~~~~~~-~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~   91 (156)
                      ..|+||+++.+|.|.+.+.. ..++++|..|.-|-++...+    +-+-+||-..
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~~~v~~~~~~I~~~q~Spe~s----~Kv~Lkiv~~   70 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK----AKIQLQLVLH   70 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSSCSEEEETTTEEEEEECCTTC----SSEEEEEEET
T ss_pred             CCcEEEEEcCeEEEEcCCCCCceEEEEhhhhhceecCCCCc----ccceeEEEEe
Confidence            58999999999999998433 35999999999999999865    5566777654

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.031  Score=39.11  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=34.3

Q ss_pred             CCCceEEecCCEEEEecCCCcceeEEEEecceEEEeeCCCCce--EEEecCcE
Q psy9054          17 PSGNVLHQEPATTAYIENENLGTGTLYIAESKLQWTNSSSGLG--FALEYPRI   67 (156)
Q Consensus        17 p~e~v~~~~~~~~l~~~~~~~g~GtL~Vt~~~l~w~~~~~~~G--~si~YpsI   67 (156)
                      |+|.|.....+|..+=.....-.|+||+|+-||++.+.+...-  +.||+..|
T Consensus         7 pGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I   59 (125)
T d1zsqa1           7 PGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVI   59 (125)
T ss_dssp             TTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGE
T ss_pred             CCcEEEEeeccEEEEccCCCccceEEEEEeeEEEEEcCCCCccEEEEecccee
Confidence            6888888877775443223334899999999999998744443  34444444

>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: BPHL domain
domain: Uncharacterized protein Shew0819
species: Shewanella loihica [TaxId: 359303]

Probab=85.29  E-value=4.1  Score=27.81  Aligned_cols=74  Identities=12%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             EEEecceEEEeeCC--CC---ceEEEecCcEEEEEEecCCCCCCcceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy9054          42 LYIAESKLQWTNSS--SG---LGFALEYPRITIHAISRDTNHFAEECIYLQVEREKSDEGDGAGGDIGDEEDDDDDDEGS  116 (156)
Q Consensus        42 L~Vt~~~l~w~~~~--~~---~G~si~YpsI~LHAIsrd~~~~p~~clY~qld~~~~~~~~~~~gd~~~e~ed~d~e~~~  116 (156)
                      ...|++||+.++..  ++   .=++|||.+|..-+|-....-....-|.+.+...                       ..
T Consensus        36 ~~FTnkRlI~vD~qg~tGkK~~~~siPY~~I~~~siEtAGtfD~DsElki~~~~~-----------------------~~   92 (116)
T d3dcxa1          36 FVFTNKRLILIDKQGVTGKKVSYHSVPYKAITHFEVETAGTFDMDAELKLWISGQ-----------------------KD   92 (116)
T ss_dssp             EEEESSEEEEEEEESSSCCEEEEEEEEGGGEEEEEEECCSSTTSCEEEEEEETTC-----------------------SS
T ss_pred             EEEecceEEEEeccccccceEEEEEEehhHeEEEEEEeCccccCcccEEEEEecC-----------------------ce
Confidence            34599999999951  22   2368999999999998775533434466666422                       11


Q ss_pred             eeEEEEEcCCcchHHHHHHHHHhh
Q psy9054         117 MIEIRLVPQDKTALEDIFMAMNQC  140 (156)
Q Consensus       117 ~~Elr~vP~d~~~l~~if~Ams~C  140 (156)
                      ..++.|  .....+..++++|++.
T Consensus        93 ~i~~ef--~~~~di~~i~~~La~~  114 (116)
T d3dcxa1          93 PLVKEL--KKGTDVVGIQKTIANF  114 (116)
T ss_dssp             CEEEEE--CBTSCHHHHHHHHHHH
T ss_pred             EEEEEe--CCccCHHHHHHHHHHh
Confidence            122333  3345688899988864