Psyllid ID: psy9058

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--

MPFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFYPS

ccccccccccccccEEEEccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccc

cccccccccccccEEEEEccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHcHccEEEEEccccccccccHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccc

mpfwcppgrksgkgyfvyakgskarpvndGALAILKKyslqpqsalkdeDLQLRMVSRFVNEAVLCLEETilnsptdgdvgavfglgfppfsggpfrwvdwyGADKLVQKMLSYEnlygapfrpcqllldhakdsskkfyps

mpfwcppgrksgKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHakdsskkfyps

MPFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVfglgfppfsggpfRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFYPS

************KGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLD************

***WCPPGRKSGKGYFVYAKGS***PVNDGALAIL**************DLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDS***FY**

MPFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAK*********

*PFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSS******

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MPFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFYPS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		142	2.2.26 [Sep-21-2011]
Q8BMS1		763	Trifunctional enzyme subu	yes	N/A	0.936	0.174	0.582	6e-42
P40939		763	Trifunctional enzyme subu	yes	N/A	0.936	0.174	0.567	2e-41
Q29554		763	Trifunctional enzyme subu	yes	N/A	0.936	0.174	0.567	8e-41
Q64428		763	Trifunctional enzyme subu	yes	N/A	0.936	0.174	0.567	2e-39
Q9KT58		708	Fatty acid oxidation comp	yes	N/A	0.908	0.182	0.477	1e-28
A5F2P2		708	Fatty acid oxidation comp	yes	N/A	0.908	0.182	0.477	1e-28
Q87MM3		703	Fatty acid oxidation comp	yes	N/A	0.894	0.180	0.481	1e-28
Q8DB47		705	Fatty acid oxidation comp	yes	N/A	0.894	0.180	0.488	2e-28
Q7MIS5		705	Fatty acid oxidation comp	yes	N/A	0.894	0.180	0.488	2e-28
A3QFP3		706	Fatty acid oxidation comp	yes	N/A	0.908	0.182	0.451	2e-27

>sp\|Q8BMS1\|ECHA_MOUSE Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus GN=Hadha PE=1 SV=1	Back alignment and function desciption

 Score =  169 bits (427), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/134 (58%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
           GRKSGKG+++Y +GSK + +N     IL    L  +  +  DED+Q R+++RFVNEAVLC
Sbjct: 629 GRKSGKGFYIYQEGSKNKSLNSEMDNILANLRLPAKPEVSSDEDVQYRVITRFVNEAVLC 688

Query: 67  LEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQ 126
           L+E IL +P +GD+GAVFGLGFPP  GGPFR+VD YGA K+V ++  YE+ YG  F PCQ
Sbjct: 689 LQEGILATPAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYESAYGTQFTPCQ 748

Query: 127 LLLDHAKDSSKKFY 140
           LLLDHA +SSKKFY
Sbjct: 749 LLLDHANNSSKKFY 762

Bifunctional subunit.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 1

>sp\|P40939\|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2	Back alignment and function description

>sp\|Q29554\|ECHA_PIG Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa GN=HADHA PE=1 SV=1	Back alignment and function description

>sp\|Q64428\|ECHA_RAT Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus norvegicus GN=Hadha PE=1 SV=2	Back alignment and function description

>sp\|Q9KT58\|FADJ_VIBCH Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fadJ PE=3 SV=2	Back alignment and function description

>sp\|A5F2P2\|FADJ_VIBC3 Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadJ PE=3 SV=1	Back alignment and function description

>sp\|Q87MM3\|FADJ_VIBPA Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=fadJ PE=3 SV=1	Back alignment and function description

>sp\|Q8DB47\|FADJ_VIBVU Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain CMCP6) GN=fadJ PE=3 SV=1	Back alignment and function description

>sp\|Q7MIS5\|FADJ_VIBVY Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1	Back alignment and function description

>sp\|A3QFP3\|FADJ_SHELP Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		142
328717308		760	PREDICTED: trifunctional enzyme subunit	0.950	0.177	0.748	9e-59
157125238		770	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.950	0.175	0.759	2e-52
157140862		741	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.950	0.182	0.759	2e-52
114052230		762	hydroxyacyl-coenzyme A dehydrogenase [Bo	0.936	0.174	0.731	4e-52
158297504		771	AGAP007784-PA [Anopheles gambiae str. PE	0.950	0.175	0.751	4e-52
322786657		696	hypothetical protein SINV_01640 [Solenop	0.943	0.192	0.686	2e-51
345495602		765	PREDICTED: trifunctional enzyme subunit	0.943	0.175	0.701	4e-51
312384727		772	hypothetical protein AND_01710 [Anophele	0.943	0.173	0.742	7e-51
332018665		743	Trifunctional enzyme subunit alpha, mito	0.943	0.180	0.671	3e-50
91083819		761	PREDICTED: similar to hydroxyacyl-coenzy	0.943	0.176	0.686	3e-50

>gi\|328717308\|ref\|XP_001949325.2\| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  231 bits (588), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 101/135 (74%), Positives = 116/135 (85%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKGYFVY  G+K+RP N  A+++L+ + LQP      E+ QLRMVSRFVNEAVLCL
Sbjct: 626 GRKSGKGYFVYKAGTKSRPENTEAISLLENFKLQPIGEQSVENQQLRMVSRFVNEAVLCL 685

Query: 68  EETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQL 127
           EE+ILNSPT+GD+GAVFGLGFPPFSGGPFRWVDWYGADKLV KM +++N YG PF+PCQL
Sbjct: 686 EESILNSPTEGDIGAVFGLGFPPFSGGPFRWVDWYGADKLVSKMQTFQNDYGLPFKPCQL 745

Query: 128 LLDHAKDSSKKFYPS 142
           LLDHAKD SKKFYPS
Sbjct: 746 LLDHAKDKSKKFYPS 760

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|157125238\|ref\|XP_001654257.1\| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi\|157125240\|ref\|XP_001654258.1\| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi\|108873690\|gb\|EAT37915.1\| AAEL010146-PA [Aedes aegypti] gi\|108873691\|gb\|EAT37916.1\| AAEL010146-PB [Aedes aegypti]	Back alignment and taxonomy information

>gi\|157140862\|ref\|XP_001647675.1\| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi\|108867146\|gb\|EAT32343.1\| AAEL015524-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|114052230\|ref\|NP_001040132.1\| hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori] gi\|87248157\|gb\|ABD36131.1\| hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori]	Back alignment and taxonomy information

>gi\|158297504\|ref\|XP_317731.4\| AGAP007784-PA [Anopheles gambiae str. PEST] gi\|157015227\|gb\|EAA12305.4\| AGAP007784-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|322786657\|gb\|EFZ13041.1\| hypothetical protein SINV_01640 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|345495602\|ref\|XP_001605350.2\| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|312384727\|gb\|EFR29384.1\| hypothetical protein AND_01710 [Anopheles darlingi]	Back alignment and taxonomy information

>gi\|332018665\|gb\|EGI59237.1\| Trifunctional enzyme subunit alpha, mitochondrial [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|91083819\|ref\|XP_973530.1\| PREDICTED: similar to hydroxyacyl-coenzyme A dehydrogenase [Tribolium castaneum]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		142
FB\|FBgn0028479		783	Mtpalpha "Mitochondrial trifun	0.936	0.169	0.627	1.3e-35
ZFIN\|ZDB-GENE-041111-204		763	hadhab "hydroxyacyl-Coenzyme A	0.936	0.174	0.559	7.5e-33
ZFIN\|ZDB-GENE-031222-5		761	hadhaa "hydroxyacyl-Coenzyme A	0.936	0.174	0.552	9.1e-32
MGI\|MGI:2135593		763	Hadha "hydroxyacyl-Coenzyme A	0.922	0.171	0.507	1.7e-29
UNIPROTKB\|P40939		763	HADHA "Trifunctional enzyme su	0.936	0.174	0.485	4.5e-29
WB\|WBGene00020347		781	T08B2.7 [Caenorhabditis elegan	0.929	0.169	0.529	4.8e-29
UNIPROTKB\|Q29554		763	HADHA "Trifunctional enzyme su	0.936	0.174	0.485	2e-28
UNIPROTKB\|Q3SZ00		763	HADHA "HADHA protein" [Bos tau	0.922	0.171	0.492	2.6e-28
UNIPROTKB\|F1PIP0		747	HADHA "Uncharacterized protein	0.929	0.176	0.485	4e-28
RGD\|620512		763	Hadha "hydroxyacyl-CoA dehydro	0.936	0.174	0.485	4e-27

FB\|FBgn0028479 Mtpalpha "Mitochondrial trifunctional protein alpha subunit" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 393 (143.4 bits), Expect = 1.3e-35, P = 1.3e-35
 Identities = 86/137 (62%), Positives = 95/137 (69%)

Query:     8 GRKSGKGYFVYAKGSK--ARPVNDGALAILK-KYSLQPQSALKDEDLQLRMVSRFVNEAV 64
             GRKSGKG F+Y  G K   RPVN+ AL I+K KY+L  + A   EDL LRMVSRF+NEAV
Sbjct:   641 GRKSGKGIFLY-DGQKRGTRPVNNDALEIVKQKYALVSKGANAPEDLTLRMVSRFINEAV 699

Query:    65 LCLEETILNSPTDGDVGAVXXXXXXXXXXXXXRWVDWYGADKLVQKMLSYENLYGAPFRP 124
             LCLEE IL+SP +GDVGAV             RWVD YGA KLV KM SY  LYGAPF+P
Sbjct:   700 LCLEEKILDSPLEGDVGAVFGLGFPPFSGGPFRWVDQYGAGKLVSKMQSYAELYGAPFKP 759

Query:   125 CQLLLDHAKDSSKKFYP 141
              Q LLD AKD SKKFYP
Sbjct:   760 AQTLLDMAKDPSKKFYP 776

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISS

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0042060 "wound healing" evidence=IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

ZFIN\|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|P40939 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

WB\|WBGene00020347 T08B2.7 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29554 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SZ00 HADHA "HADHA protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PIP0 HADHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|620512 Hadha "hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40939	ECHA_HUMAN	1, ., 1, ., 1, ., 2, 1, 1	0.5671	0.9366	0.1743	yes	N/A
Q64428	ECHA_RAT	1, ., 1, ., 1, ., 2, 1, 1	0.5671	0.9366	0.1743	yes	N/A
Q8BMS1	ECHA_MOUSE	1, ., 1, ., 1, ., 2, 1, 1	0.5820	0.9366	0.1743	yes	N/A
Q29554	ECHA_PIG	1, ., 1, ., 1, ., 2, 1, 1	0.5671	0.9366	0.1743	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		142
TIGR02441		737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-68
PRK11154		708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-42
TIGR02440		699	TIGR02440, FadJ, fatty oxidation complex, alpha su	8e-37
PRK11730		715	PRK11730, fadB, multifunctional fatty acid oxidati	3e-31
TIGR02437		714	TIGR02437, FadB, fatty oxidation complex, alpha su	3e-26
pfam00725		97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	9e-07
COG1250		307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	3e-04

>gnl\|CDD\|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial	Back alignment and domain information

 Score =  218 bits (558), Expect = 2e-68
 Identities = 88/135 (65%), Positives = 102/135 (75%), Gaps = 2/135 (1%)

Query: 8   GRKSGKGYFVYAKGSKA-RPVNDGALAILKKYSLQPQSAL-KDEDLQLRMVSRFVNEAVL 65
           GRKSGKG F+Y +G K  + VN  A  IL +Y L P++ +   ED+Q+R+VSRFVNEAVL
Sbjct: 603 GRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVL 662

Query: 66  CLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPC 125
           CLEE IL SP++GD+GAVFGLGFPPF GGPFR+VD YGADKLV KM  Y   YG  F PC
Sbjct: 663 CLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQFTPC 722

Query: 126 QLLLDHAKDSSKKFY 140
           QLLLDHAK   KKFY
Sbjct: 723 QLLLDHAKSPGKKFY 737

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl\|CDD\|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>gnl\|CDD\|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ	Back alignment and domain information

>gnl\|CDD\|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>gnl\|CDD\|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB	Back alignment and domain information

>gnl\|CDD\|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		142
TIGR02441		737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
PRK11154		708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440		699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR02437		714	FadB fatty oxidation complex, alpha subunit FadB.	99.98
PRK11730		715	fadB multifunctional fatty acid oxidation complex	99.97
PRK08268		507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.96
TIGR02279		503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.96
KOG1683\|consensus		380		99.95
PF00725		97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.93
KOG2304\|consensus		298		99.89
PRK05808		282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.87
PRK09260		288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.87
PRK07819		286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.86
PRK08293		287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.85
PLN02545		295	3-hydroxybutyryl-CoA dehydrogenase	99.84
COG1250		307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.84
PRK06035		291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.83
PRK07530		292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.83
PRK08269		314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.79
TIGR02440		699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.78
PRK11154		708	fadJ multifunctional fatty acid oxidation complex	99.77
PRK06130		311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.76
TIGR02279		503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.74
TIGR02441		737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.73
PRK11730		715	fadB multifunctional fatty acid oxidation complex	99.73
TIGR02437		714	FadB fatty oxidation complex, alpha subunit FadB.	99.72
PRK08268		507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.68
PRK07066		321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.59
PRK06129		308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.27
PRK07531		495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.8
KOG1683\|consensus		380		98.47
KOG2305\|consensus		313		97.95
PRK08269		314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.7

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial	Back alignment and domain information

Probab=100.00  E-value=1.2e-33  Score=250.11  Aligned_cols=136  Identities=65%  Similarity=1.115  Sum_probs=122.0

Q ss_pred             CCCccccccceEeecCCCC-CCCCCHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHH
Q psy9058           5 CPPGRKSGKGYFVYAKGSK-ARPVNDGALAILKKYSLQPQS-ALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGA   82 (142)
Q Consensus         5 ~rlG~K~G~GfY~y~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~   82 (142)
                      +|+|+|||+|||+|+++++ .+.++|++..++.+..+.+.. ..++++|+||++++++|||++||+|||+++|+|||.+|
T Consensus       600 G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~  679 (737)
T TIGR02441       600 GFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGA  679 (737)
T ss_pred             CCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHH
Confidence            6999999999999987653 467899999988655433222 47899999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHccCCCCC
Q psy9058          83 VFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFY  140 (142)
Q Consensus        83 ~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~~~l~~~~~~gg~gfy  140 (142)
                      ++|+|||+|+||||+++|.+|+++++++++.+++.+|++|+|+++|++|+++-|++||
T Consensus       680 ~~G~GfP~~~gGP~~~aD~~Gld~v~~~~~~l~~~~g~~~~p~~lL~~~~~~~g~~f~  737 (737)
T TIGR02441       680 VFGLGFPPFLGGPFRFVDLYGADKLVDKMEKYAAAYGVQFTPCQLLLDHAKSPGKKFY  737 (737)
T ss_pred             HhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHhcCCCCC
Confidence            9999999999999999999999999999999999999999999999999876466787

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ	Back alignment and domain information

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB	Back alignment and domain information

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated	Back alignment and domain information

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC	Back alignment and domain information

>KOG1683\|consensus	Back alignment and domain information

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1	Back alignment and domain information

>KOG2304\|consensus	Back alignment and domain information

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase	Back alignment and domain information

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]	Back alignment and domain information

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ	Back alignment and domain information

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC	Back alignment and domain information

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial	Back alignment and domain information

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed	Back alignment and domain information

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB	Back alignment and domain information

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated	Back alignment and domain information

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated	Back alignment and domain information

>KOG1683\|consensus	Back alignment and domain information

>KOG2305\|consensus	Back alignment and domain information

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		142
1wdk_A		715	Fatty Acid Beta-Oxidation Multienzyme Complex From		9e-08
2wtb_A		725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		4e-04

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Back alignment and structure

Iteration: 1

Score = 52.4 bits (124), Expect = 9e-08, Method: Composition-based stats. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 5/135 (3%) Query: 8 GRKSGKGYFVY---AKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64 G+K+GKG++ Y KG + + V+ L +LK + Q + DED+ M+ E V Sbjct: 582 GQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYE-QRDVTDEDIINWMMIPLCLETV 640 Query: 65 LCLEETILNSPTDGDVGAVXXXXXXXXXXXXXRWVDWYGADKLVQKMLSYENLYGAPFRP 124 CLE+ I+ + + D+G V R++D G + V Y L GA + P Sbjct: 641 RCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAEL-GALYHP 699 Query: 125 CQLLLDHAKDSSKKF 139 L + AK+ F Sbjct: 700 TAKLREMAKNGQSFF 714

PyMOL of 1wdk

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		142
3k6j_A		460	Protein F01G10.3, confirmed by transcript evidenc;	5e-50
1zcj_A		463	Peroxisomal bifunctional enzyme; peroxisomal multi	5e-49
3zwc_A		742	Peroxisomal bifunctional enzyme; beta oxidation pa	1e-48
2wtb_A		725	MFP2, fatty acid multifunctional protein (ATMFP2);	9e-46
1wdk_A		715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-45
3mog_A		483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	4e-09
3mog_A		483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	5e-05
3ctv_A		110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	5e-08
1zej_A		293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	6e-06
1f0y_A		302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	7e-05

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460	Back alignment and structure

 Score =  164 bits (418), Expect = 5e-50
 Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNEAV 64
           GRK+ KG++ Y   ++ +  +     I+++ S         + D+D+   M+   VNE  
Sbjct: 312 GRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQIINDQDVINFMLYPTVNEGY 371

Query: 65  LCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAP--F 122
            C+EE ++++ +  D+  + G G+P  SGGP R+    G DK+   ++ + +L      +
Sbjct: 372 RCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAY 431

Query: 123 RPCQLLLDHAKDSSKKFYPS 142
                L      +       
Sbjct: 432 IVADALKTANVSTGSSGSSG 451

PyMOL of 3k6j

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463	Back alignment and structure

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742	Back alignment and structure

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725	Back alignment and structure

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715	Back alignment and structure

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483	Back alignment and structure

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483	Back alignment and structure

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110	Back alignment and structure

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293	Back alignment and structure

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		142
3zwc_A		742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
3k6j_A		460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
1zcj_A		463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
1wdk_A		715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.98
2wtb_A		725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.97
3mog_A		483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.97
3ctv_A		110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.92
1f0y_A		302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.79
1zej_A		293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.77
3mog_A		483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.76
4e12_A		283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.74
3k6j_A		460	Protein F01G10.3, confirmed by transcript evidenc;	99.67
2wtb_A		725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.66
1wdk_A		715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.65
3zwc_A		742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.61
1zcj_A		463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.5
3ado_A		319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.47
2dpo_A		319	L-gulonate 3-dehydrogenase; structural genomics, N	99.19
2ewd_A		317	Lactate dehydrogenase,; protein-substrate_cofactor	91.6
2i76_A		276	Hypothetical protein; NADP, dehydrogenase, TM1727,	86.86

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*	Back alignment and structure

Probab=100.00  E-value=3.6e-34  Score=252.43  Aligned_cols=136  Identities=24%  Similarity=0.380  Sum_probs=122.0

Q ss_pred             CCCccccccceEeecCCC-CCCCCCHHHHHHHHHhcc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHH
Q psy9058           5 CPPGRKSGKGYFVYAKGS-KARPVNDGALAILKKYSL---QPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDV   80 (142)
Q Consensus         5 ~rlG~K~G~GfY~y~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~   80 (142)
                      +|+|||||+|||+|++++ +.+.+||++..++...+.   ..+..++.++|++|++++++||+++|++|||+.+|+|||.
T Consensus       588 G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~  667 (742)
T 3zwc_A          588 GRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHIDV  667 (742)
T ss_dssp             TCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             CCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHH
Confidence            699999999999998754 445679999888765544   2346789999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCC--CCCccHHHHHHHHccCCCCC
Q psy9058          81 GAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGA--PFRPCQLLLDHAKDSSKKFY  140 (142)
Q Consensus        81 a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~--~~~p~~~l~~~~~~gg~gfy  140 (142)
                      +|++|+|||+|+||||+|+|.+|++.++++++++++++|+  +|+|+++|++|+++|...||
T Consensus       668 a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~~f~  729 (742)
T 3zwc_A          668 IYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLK  729 (742)
T ss_dssp             HHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGG
T ss_pred             HHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCCccc
Confidence            9999999999999999999999999999999999999984  89999999999999555666

PyMOL of 3zwc

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}	Back alignment and structure

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}	Back alignment and structure

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*	Back alignment and structure

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}	Back alignment and structure

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}	Back alignment and structure

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*	Back alignment and structure

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}	Back alignment and structure

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}	Back alignment and structure

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*	Back alignment and structure

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}	Back alignment and structure

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}	Back alignment and structure

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*	Back alignment and structure

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*	Back alignment and structure

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}	Back alignment and structure

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*	Back alignment and structure

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A	Back alignment and structure

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		142
d1wdka2		95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	1e-23
d1wdka1		124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	0.001

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95	Back information, alignment and structure


class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 86.0 bits (213), Expect = 1e-23
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 48  DEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKL 107
           DED+   M+     E V CLE+ I+ +  + D+G V+G+GFP F GG  R++D  G  + 
Sbjct: 4   DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEF 63

Query: 108 VQKMLSYENLYGAPFRPCQLLLDHAKDSSKKFY 140
           V     Y    GA + P   L + AK + + F+
Sbjct: 64  VALADQYAE-LGALYHPTAKLREMAK-NGQSFF 94

PyMOL of d1wdka2

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		142
d1wdka2		95	Fatty oxidation complex alpha subunit, C-terminal	100.0
d1f0ya1		99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.93
d1wdka1		124	Fatty oxidation complex alpha subunit, C-terminal	99.87
d1wdka1		124	Fatty oxidation complex alpha subunit, C-terminal	98.2

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}	Back information, alignment and structure

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=4.8e-33  Score=187.82  Aligned_cols=94  Identities=34%  Similarity=0.664  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCccCChHHHHHHHHhhcCCCCCCCchhHHHHhhCHHHHHHHHHHHHHHhCCCCCcc
Q psy9058          46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPTDGDVGAVFGLGFPPFSGGPFRWVDWYGADKLVQKMLSYENLYGAPFRPC  125 (142)
Q Consensus        46 ~~~~~i~~Rll~~~~nEa~~ll~eGv~~tp~diD~a~~~g~Gfp~~~gGp~~~~D~~G~~~~~~~l~~l~~~~g~~~~p~  125 (142)
                      +|+++|+||++++++|||++|++|||+.||+|||.+++.|+|||+++||||+++|.+|++.++++++.++ +++++|+|+
T Consensus         2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~p~   80 (95)
T d1wdka2           2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYHPT   80 (95)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCCCC
Confidence            6889999999999999999999999977999999999999999999999999999999999999999986 489999999


Q ss_pred             HHHHHHHHccCCCCCC
Q psy9058         126 QLLLDHAKDSSKKFYP  141 (142)
Q Consensus       126 ~~l~~~~~~gg~gfy~  141 (142)
                      ++|++|+++ |++||.
T Consensus        81 ~~L~~~~~~-g~~Fyg   95 (95)
T d1wdka2          81 AKLREMAKN-GQSFFG   95 (95)
T ss_dssp             HHHHHHHHT-TCCSCC
T ss_pred             HHHHHHHHh-CcCCCC
Confidence            999999999 999994

PyMOL of d1wdka2

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}	Back information, alignment and structure

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}	Back information, alignment and structure