Psyllid ID: psy9059

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MEPFFMVIHLIIIDLRQFLHGEGSEWLDLQETCQRTVYALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP
Secondary Structure (PSIPRED)
ccccEEEEEEEEEccccHHccccccHHcHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccEEEEcccccccccHHHHHHHHHHccccccEEEEccccccccHHHcccccccccEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHccccEEEEcccccEEHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEcHHHHHcccccEEEEHHHHHHHHHHHccccccccHHHcccEEEEccHHHHHccccEEEEEEEEEccccHHHHHHHHHHHHHHccccEEEEEcccccEEEHHHHHcccccccEEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MEPFFMVIHLIIIDLRQflhgegsewlDLQETCQRTVYALCTtvplvstshtgiTYLYTYSErlmgsnglamvfplqeqipiqtpqqmSERIYMYTYSerlmgsnglamvfplqeqipiqtphliigmhyfspvdkMQLLEIItteqtsqdTAASAVAVGLKQGKVVItvkdgpgfyTTRILSTMLSEAMRILqegtspkdldrltkqfgfpvgaatlsdevgIDVGAHIAKDlsktfgdrfsggnlnVLNEMVEKGYldfknkdgyyp
Flexible Loop (DISEMBL)
MEPFFMVIHLIIIDLRQFLHGEGSEWLDLQETCQRTVYALCttvplvstshtGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVavglkqgkvvitvkdgpgfYTTRILSTMLSEAMRILQEgtspkdldrLTKQFGFPVGAATLSDEVGIDVGAHIAKDLsktfgdrfsggnlNVLNemvekgyldfknkdgyyp
Low Complexity Region (SEG)
MEPFFMVIHLIIIDLRQFLHGEGSEWLDLQETCQRTVYALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP
Disordered region (IsUnstruct)
***FFMVIHLIIIDLRQFLHGEGSEWLDLQETCQRTVYALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQE******LDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFK*******
Disordered Region (DISOPRED)
*EPFFMVIHLIIIDLRQFLHGEGSEWLDLQETCQRT*YALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP
Disordered Region (DISEMBL)
MEPFFMVIHLIIIDLRQFLHGEGSEWLDLQETCQRTVYALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP
Disordered Region (DISPRO)
*EPFFMVIHLIIIDLRQFLHGEGSEWLDLQETCQRTVYALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNK**YYP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPFFMVIHLIIIDLRQFLHGEGSEWLDLQETCQRTVYALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
P40939	763	Trifunctional enzyme subu	yes	N/A	0.617	0.217	0.644	1e-57
Q29554	763	Trifunctional enzyme subu	yes	N/A	0.591	0.208	0.65	4e-57
Q8BMS1	763	Trifunctional enzyme subu	yes	N/A	0.553	0.195	0.684	1e-52
Q64428	763	Trifunctional enzyme subu	yes	N/A	0.553	0.195	0.697	3e-52
B0TL21	708	Fatty acid oxidation comp	yes	N/A	0.539	0.204	0.476	7e-31
A3QFP3	706	Fatty acid oxidation comp	yes	N/A	0.546	0.208	0.469	2e-30
Q0HKD1	709	Fatty acid oxidation comp	yes	N/A	0.539	0.204	0.476	2e-30
A0KV76	709	Fatty acid oxidation comp	yes	N/A	0.539	0.204	0.476	2e-30
Q5QXM1	708	Fatty acid oxidation comp	yes	N/A	0.546	0.207	0.469	2e-30
Q07ZP8	710	Fatty acid oxidation comp	yes	N/A	0.539	0.204	0.476	2e-30

>sp|P40939|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 109/169 (64%), Positives = 131/169 (77%), Gaps = 3/169 (1%)

Query: 101 LMGSNGLAMVFPLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAV 159
           +  SN  A+  P+ E   + + P  +IGMHYFSPVDKMQLLEIITTE+TS+DT+ASAVAV
Sbjct: 471 IFASNTSAL--PISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAV 528

Query: 160 GLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLS 219
           GLKQGKV+I VKDGPGFYTTR L+ M+SE +RILQEG  PK LD LT  FGFPVGAATL 
Sbjct: 529 GLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDSLTTSFGFPVGAATLV 588

Query: 220 DEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           DEVG+DV  H+A+DL K FG+RF GGN  +L +MV KG+L  K+  G+Y
Sbjct: 589 DEVGVDVAKHVAEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGFY 637

Bifunctional subunit.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 1

>sp|Q29554|ECHA_PIG Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa GN=HADHA PE=1 SV=1

 Score =  221 bits (564), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 104/160 (65%), Positives = 127/160 (79%), Gaps = 1/160 (0%)

Query: 110 VFPLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVI 168
             P+ E   + + P  +IGMHYFSPVDKMQLLEIITTE+TS+D+ ASAV VGLKQGKV+I
Sbjct: 478 ALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAVEVGLKQGKVII 537

Query: 169 TVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGA 228
            VKDGPGFYTTR L+ M+SE +RILQEG  PK LD LT  FGFPVGAATL DEVG+DV  
Sbjct: 538 VVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTTSFGFPVGAATLMDEVGMDVAK 597

Query: 229 HIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           H+A++L K FG+RF+GGNL+VL +M+ KG+L  K+  G+Y
Sbjct: 598 HVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGFY 637

Bifunctional subunit; cannot use crotonyl-CoA or 3-hydroxybutyryl-CoA as substrate.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|Q8BMS1|ECHA_MOUSE Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus GN=Hadha PE=1 SV=1

 Score =  206 bits (524), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 123/149 (82%)

Query: 120 QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT 179
           + P  +IGMHYFSPVDKMQLLEIITT++TS+DT ASAVAVGL+QGKV+I VKDGPGFYTT
Sbjct: 489 KRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAVGLRQGKVIIVVKDGPGFYTT 548

Query: 180 RILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
           R L+ M+SE MRILQEG  PK LD LT  FGFPVGAATL+DEVG+DV  H+A+DL K FG
Sbjct: 549 RCLAPMMSEVMRILQEGVDPKKLDALTTGFGFPVGAATLADEVGVDVAQHVAEDLGKAFG 608

Query: 240 DRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           +RF GG++ +L +MV KG+L  K+  G+Y
Sbjct: 609 ERFGGGSVELLKQMVSKGFLGRKSGKGFY 637

Bifunctional subunit.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|Q64428|ECHA_RAT Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus norvegicus GN=Hadha PE=1 SV=2

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 104/149 (69%), Positives = 122/149 (81%)

Query: 120 QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT 179
           Q P  +IGMHYFSPVDKMQLLEIITT++TS+DT ASAVAVGLKQGKV+I VKDGPGFYTT
Sbjct: 489 QRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAVGLKQGKVIIVVKDGPGFYTT 548

Query: 180 RILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
           R L+ M+SE +RILQEG  PK LD LT  FGFPVGAATL+DEVGIDV  H+A+DL K FG
Sbjct: 549 RCLAPMMSEVIRILQEGVDPKKLDALTTGFGFPVGAATLADEVGIDVAQHVAEDLGKAFG 608

Query: 240 DRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           +RF GG++ +L  MV KG+L  K+  G+Y
Sbjct: 609 ERFGGGSVELLKLMVSKGFLGRKSGKGFY 637

Bifunctional subunit.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|B0TL21|FADJ_SHEHH Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1

 Score =  134 bits (337), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 94/147 (63%), Gaps = 2/147 (1%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  +IG+HYFSPV+KM L+E+I  E+TS +T A+ VA   KQGK  I V+DG GFY  RI
Sbjct: 443 PENVIGLHYFSPVEKMPLVEVIAHEKTSAETIATTVAFAKKQGKTPIVVQDGAGFYVNRI 502

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           L+  ++EA ++L EG S + LD+   +FGFPVG  TL DEVGIDVGA I+  L K  G+R
Sbjct: 503 LALYMNEAAQLLLEGQSVEHLDKALIKFGFPVGPMTLLDEVGIDVGAKISPILEKELGER 562

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           F        ++++       KN  G+Y
Sbjct: 563 FKAP--TAFDKLLADDRKGRKNGKGFY 587

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella halifaxensis (strain HAW-EB4) (taxid: 458817)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A3QFP3|FADJ_SHELP Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 92/149 (61%), Gaps = 2/149 (1%)

Query: 120 QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT 179
           + P  +IG+HYFSPV+KM L+E+I  ++TS  T A+ VA   KQGK  I VKDG GFY  
Sbjct: 439 ERPENVIGLHYFSPVEKMPLVEVIAHDKTSPQTIATTVAFARKQGKTPIVVKDGAGFYVN 498

Query: 180 RILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
           RIL+  ++EA  +L EG S   LD+   +FGFPVG  TL DEVGIDVGA I+  L K  G
Sbjct: 499 RILALYMNEAANLLLEGQSVDHLDKALVKFGFPVGPMTLLDEVGIDVGAKISPILEKELG 558

Query: 240 DRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           +RF        ++++       KN  G+Y
Sbjct: 559 ERFKAP--AAFDKLLADDRKGRKNGKGFY 585

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella loihica (strain ATCC BAA-1088 / PV-4) (taxid: 323850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q0HKD1|FADJ_SHESM Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-4) GN=fadJ PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 2/147 (1%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  +IG+HYFSPV+KM L+E+I   +TS +T A+ VA   KQGK  I V+DG GFY  RI
Sbjct: 441 PENVIGLHYFSPVEKMPLVEVIAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRI 500

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           L+  ++EA ++L EG S + LD+   +FGFPVG  TL DEVGIDVGA IA  L K  G+R
Sbjct: 501 LALYMNEAAQLLLEGQSIEHLDKALVKFGFPVGPITLLDEVGIDVGAKIAPILEKELGER 560

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           F        ++++       KN  G+Y
Sbjct: 561 FKAP--AAFDKLLSDDRKGRKNGKGFY 585

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella sp. (strain MR-4) (taxid: 60480)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A0KV76|FADJ_SHESA Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadJ PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 93/147 (63%), Gaps = 2/147 (1%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  +IG+HYFSPV+KM L+E+I   +TS +T A+ VA   KQGK  I V+DG GFY  RI
Sbjct: 441 PENVIGLHYFSPVEKMPLVEVIAHAKTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRI 500

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           L+  ++EA ++L EG S + LD+   +FGFPVG  TL DEVGIDVGA IA  L K  G+R
Sbjct: 501 LALYMNEAAQLLLEGQSIEHLDKALVKFGFPVGPITLLDEVGIDVGAKIAPILEKELGER 560

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           F        ++++       KN  G+Y
Sbjct: 561 FKAP--AAFDKLLSDDRKGRKNGKGFY 585

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella sp. (strain ANA-3) (taxid: 94122)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5QXM1|FADJ_IDILO Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=fadJ PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/149 (46%), Positives = 91/149 (61%), Gaps = 2/149 (1%)

Query: 120 QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT 179
           + P  +IG+HYFSPVDKM L EIIT   TS  T A+ V++  KQGK  I VKDG GFY  
Sbjct: 441 KRPEQVIGLHYFSPVDKMPLAEIITHPGTSDKTIATTVSLAKKQGKTPIVVKDGAGFYVN 500

Query: 180 RILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
           RIL+  ++EA R+L  G   + +D+   +FGFPVG  TL DEVGIDV A +A  L K  G
Sbjct: 501 RILAPYMNEAARLLLAGEPIEHIDKTLVKFGFPVGPITLLDEVGIDVAAKVAPVLVKELG 560

Query: 240 DRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           DRF         ++++      KN+ G+Y
Sbjct: 561 DRFEAP--EAFEKLIDDDRKGKKNQKGFY 587

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) (taxid: 283942)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q07ZP8|FADJ_SHEFN Fatty acid oxidation complex subunit alpha OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadJ PE=3 SV=1

 Score =  132 bits (333), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 92/147 (62%), Gaps = 2/147 (1%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  +IG+HYFSPV+KM L+E+I  + TS +T A+ VA   KQGK  I V+DG GFY  RI
Sbjct: 443 PENVIGLHYFSPVEKMPLVEVIAHKTTSPETIATTVAFARKQGKTPIVVQDGAGFYVNRI 502

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           L+  ++EA ++L EG   + LDR   +FGFPVG  TL DEVGIDVGA I+  L K  GDR
Sbjct: 503 LALYMNEAAQLLLEGQRIEHLDRALVKFGFPVGPMTLLDEVGIDVGAKISPILEKELGDR 562

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           F        ++++       KN  G+Y
Sbjct: 563 FKAP--AAFDKLLADDRKGRKNGKGFY 587

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Shewanella frigidimarina (strain NCIMB 400) (taxid: 318167)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
328717308	760	PREDICTED: trifunctional enzyme subunit	0.546	0.193	0.755	9e-60
157125238	770	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.546	0.190	0.748	2e-58
157140862	741	3-hydroxyacyl-coa dehyrogenase [Aedes ae	0.546	0.198	0.748	2e-58
312384727	772	hypothetical protein AND_01710 [Anophele	0.546	0.190	0.734	3e-58
170073935	744	fatty acid oxidation complex subunit alp	0.546	0.197	0.741	4e-58
194859128	783	GG24022 [Drosophila erecta] gi|190661185	0.546	0.187	0.748	9e-58
114052230	762	hydroxyacyl-coenzyme A dehydrogenase [Bo	0.546	0.192	0.727	2e-57
158297504	771	AGAP007784-PA [Anopheles gambiae str. PE	0.546	0.190	0.727	2e-57
195339481	783	GM12408 [Drosophila sechellia] gi|194130	0.546	0.187	0.741	3e-57
19921000	783	mitochondrial trifunctional protein alph	0.546	0.187	0.741	3e-57

>gi|328717308|ref|XP_001949325.2| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Acyrthosiphon pisum]

 Score =  236 bits (602), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 111/147 (75%), Positives = 130/147 (88%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  +IGMHYFSPVDKMQLLEIITT++TS++TAA+AV++GLKQGK+VI VKDGPGFYTTRI
Sbjct: 488 PENVIGMHYFSPVDKMQLLEIITTDKTSKETAAAAVSLGLKQGKIVIVVKDGPGFYTTRI 547

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEAMR+LQEG +PK LD +TK FGFPVGAATLSDEVGIDVG HIA DL+K FG+R
Sbjct: 548 LSTMLSEAMRLLQEGVNPKQLDTITKSFGFPVGAATLSDEVGIDVGYHIATDLAKVFGER 607

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGG+LNVL  MV+ G+L  K+  GY+
Sbjct: 608 FSGGDLNVLKSMVDSGFLGRKSGKGYF 634

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125238|ref|XP_001654257.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|157125240|ref|XP_001654258.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|108873690|gb|EAT37915.1| AAEL010146-PA [Aedes aegypti] gi|108873691|gb|EAT37916.1| AAEL010146-PB [Aedes aegypti]

 Score =  232 bits (591), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 127/147 (86%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++GMHYFSPVDKMQLLEIIT   TS++TAA+AV VGLKQGKVVITV DGPGFYTTRI
Sbjct: 495 PENVVGMHYFSPVDKMQLLEIITHPGTSKETAAAAVEVGLKQGKVVITVGDGPGFYTTRI 554

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PKDLD++TK FGFPVGAATL+DEVGIDVGAHIA DLSK FGDR
Sbjct: 555 LSTMLSEAIRLLQEGVDPKDLDKMTKSFGFPVGAATLADEVGIDVGAHIAVDLSKAFGDR 614

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGGNL V+ ++V+ GY+  K+  G +
Sbjct: 615 FSGGNLGVMEDLVKAGYMGRKSGKGVF 641

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157140862|ref|XP_001647675.1| 3-hydroxyacyl-coa dehyrogenase [Aedes aegypti] gi|108867146|gb|EAT32343.1| AAEL015524-PA [Aedes aegypti]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 127/147 (86%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++GMHYFSPVDKMQLLEIIT   TS++TAA+AV VGLKQGKVVITV DGPGFYTTRI
Sbjct: 466 PENVVGMHYFSPVDKMQLLEIITHPGTSKETAAAAVEVGLKQGKVVITVGDGPGFYTTRI 525

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PKDLD++TK FGFPVGAATL+DEVGIDVGAHIA DLSK FGDR
Sbjct: 526 LSTMLSEAIRLLQEGVDPKDLDKMTKSFGFPVGAATLADEVGIDVGAHIAVDLSKAFGDR 585

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGGNL V+ ++V+ GY+  K+  G +
Sbjct: 586 FSGGNLGVMEDLVKAGYMGRKSGKGVF 612

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384727|gb|EFR29384.1| hypothetical protein AND_01710 [Anopheles darlingi]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 128/147 (87%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++GMHYFSPVDKMQLLEIIT   TS++TAA+AV VGL+QGKVVITV DGPGFYTTRI
Sbjct: 497 PENVVGMHYFSPVDKMQLLEIITHPGTSKETAAAAVEVGLRQGKVVITVGDGPGFYTTRI 556

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PKDLD++TK FGFPVGAATL+DEVGIDVGAHIA DL+K FGDR
Sbjct: 557 LSTMLSEAIRLLQEGVDPKDLDKMTKSFGFPVGAATLADEVGIDVGAHIAVDLAKAFGDR 616

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGGNL V++++V+ GY+  K+  G +
Sbjct: 617 FSGGNLGVMDDLVKAGYMGRKSGKGVF 643

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170073935|ref|XP_001870475.1| fatty acid oxidation complex subunit alpha [Culex quinquefasciatus] gi|167870657|gb|EDS34040.1| fatty acid oxidation complex subunit alpha [Culex quinquefasciatus]

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 127/147 (86%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++GMHYFSPVDKMQLLEIIT   TS++TAA+AV VGLKQGKVVITV DGPGFYTTRI
Sbjct: 469 PDKVVGMHYFSPVDKMQLLEIITHPGTSKETAAAAVEVGLKQGKVVITVGDGPGFYTTRI 528

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PKDLD++TK FGFPVGAATL+DEVGIDVGAHIA DL+K FGDR
Sbjct: 529 LSTMLSEAIRLLQEGVDPKDLDKMTKSFGFPVGAATLADEVGIDVGAHIAVDLAKAFGDR 588

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGGNL V+ +MV+ G++  K+  G +
Sbjct: 589 FSGGNLGVMEDMVKAGFMGRKSGKGVF 615

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194859128|ref|XP_001969318.1| GG24022 [Drosophila erecta] gi|190661185|gb|EDV58377.1| GG24022 [Drosophila erecta]

 Score =  229 bits (584), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 126/147 (85%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++GMHYFSPVDKMQLLEIIT   TS+DT A AVAVGLKQGKVVITV DGPGFYTTRI
Sbjct: 503 PEKVVGMHYFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVITVGDGPGFYTTRI 562

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PKDLD+ TK+FGFPVGAATL+DEVGIDVG+HIA DL+K FGDR
Sbjct: 563 LSTMLSEAIRLLQEGVDPKDLDQYTKKFGFPVGAATLADEVGIDVGSHIAVDLAKAFGDR 622

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGGNL V+N++V  G+L  K+  G +
Sbjct: 623 FSGGNLEVMNDLVLAGFLGRKSGKGIF 649

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052230|ref|NP_001040132.1| hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori] gi|87248157|gb|ABD36131.1| hydroxyacyl-coenzyme A dehydrogenase [Bombyx mori]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/147 (72%), Positives = 126/147 (85%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  +IGMHYFSPVDKMQLLEII    TS DT+A+AVAVGL+QGKVVITV DGPGFYTTRI
Sbjct: 489 PDKVIGMHYFSPVDKMQLLEIIKHPGTSDDTSAAAVAVGLRQGKVVITVGDGPGFYTTRI 548

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PK+LD +TKQFGFPVGAATL+DEVGIDVG+HIA DL+K FGDR
Sbjct: 549 LSTMLSEAVRLLQEGVDPKELDNMTKQFGFPVGAATLADEVGIDVGSHIAVDLAKAFGDR 608

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
            SGGNL ++ ++V+ GY+  K+  G+Y
Sbjct: 609 ISGGNLGIMQDLVQAGYMGRKSGKGFY 635

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297504|ref|XP_317731.4| AGAP007784-PA [Anopheles gambiae str. PEST] gi|157015227|gb|EAA12305.4| AGAP007784-PA [Anopheles gambiae str. PEST]

 Score =  228 bits (581), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/147 (72%), Positives = 127/147 (86%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++GMHYFSPVDKMQLLEIIT   TS++TAA+AV VGL+QGKVVITV DGPGFYTTRI
Sbjct: 496 PENVVGMHYFSPVDKMQLLEIITHPGTSKETAAAAVEVGLRQGKVVITVGDGPGFYTTRI 555

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PKDLD++TK FGFPVGAATL+DEVGIDVGAHIA DL+K FGDR
Sbjct: 556 LSTMLSEAIRLLQEGVDPKDLDKMTKTFGFPVGAATLADEVGIDVGAHIAVDLAKAFGDR 615

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGGNL V+ ++V+ G++  K+  G +
Sbjct: 616 FSGGNLGVMEDLVKAGFMGRKSGKGVF 642

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195339481|ref|XP_002036348.1| GM12408 [Drosophila sechellia] gi|194130228|gb|EDW52271.1| GM12408 [Drosophila sechellia]

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 126/147 (85%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++GMHYFSPVDKMQLLEIIT   TS+DT A AVAVGLKQGKVVITV DGPGFYTTRI
Sbjct: 503 PEKVVGMHYFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVITVGDGPGFYTTRI 562

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PKDLD+ TK+FGFPVGAATL+DEVGIDVG+HIA DL+K FG+R
Sbjct: 563 LSTMLSEAIRLLQEGVDPKDLDQYTKKFGFPVGAATLADEVGIDVGSHIAVDLAKAFGER 622

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGGNL V+N++V  G+L  K+  G +
Sbjct: 623 FSGGNLEVMNDLVLAGFLGRKSGKGIF 649

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921000|ref|NP_609299.1| mitochondrial trifunctional protein alpha subunit, isoform A [Drosophila melanogaster] gi|5901852|gb|AAD55434.1|AF181648_1 BcDNA.GH12558 [Drosophila melanogaster] gi|7297534|gb|AAF52789.1| mitochondrial trifunctional protein alpha subunit, isoform A [Drosophila melanogaster] gi|220943772|gb|ACL84429.1| CG4389-PA [synthetic construct]

 Score =  228 bits (580), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 126/147 (85%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++GMHYFSPVDKMQLLEIIT   TS+DT A AVAVGLKQGKVVITV DGPGFYTTRI
Sbjct: 503 PEKVVGMHYFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVITVGDGPGFYTTRI 562

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           LSTMLSEA+R+LQEG  PKDLD+ TK+FGFPVGAATL+DEVGIDVG+HIA DL+K FG+R
Sbjct: 563 LSTMLSEAIRLLQEGVDPKDLDQYTKKFGFPVGAATLADEVGIDVGSHIAVDLAKAFGER 622

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FSGGNL V+N++V  G+L  K+  G +
Sbjct: 623 FSGGNLEVMNDLVLAGFLGRKSGKGIF 649

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
FB|FBgn0028479	783	Mtpalpha "Mitochondrial trifun	0.546	0.187	0.741	2.6e-54
UNIPROTKB|P40939	763	HADHA "Trifunctional enzyme su	0.617	0.217	0.644	1.9e-53
UNIPROTKB|F1PIP0	747	HADHA "Uncharacterized protein	0.617	0.222	0.633	6.3e-53
UNIPROTKB|Q29554	763	HADHA "Trifunctional enzyme su	0.617	0.217	0.633	8e-53
MGI|MGI:2135593	763	Hadha "hydroxyacyl-Coenzyme A	0.617	0.217	0.627	8e-53
RGD|620512	763	Hadha "hydroxyacyl-CoA dehydro	0.617	0.217	0.639	1e-52
ZFIN|ZDB-GENE-041111-204	763	hadhab "hydroxyacyl-Coenzyme A	0.583	0.205	0.670	2.7e-52
UNIPROTKB|Q3SZ00	763	HADHA "HADHA protein" [Bos tau	0.617	0.217	0.621	1.3e-51
UNIPROTKB|F1NI29	697	HADHA "Uncharacterized protein	0.617	0.238	0.621	3.1e-51
ZFIN|ZDB-GENE-031222-5	761	hadhaa "hydroxyacyl-Coenzyme A	0.546	0.193	0.680	4.4e-50

FB|FBgn0028479 Mtpalpha "Mitochondrial trifunctional protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 109/147 (74%), Positives = 126/147 (85%)

Query:   122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
             P  ++GMHYFSPVDKMQLLEIIT   TS+DT A AVAVGLKQGKVVITV DGPGFYTTRI
Sbjct:   503 PEKVVGMHYFSPVDKMQLLEIITHPGTSKDTIAQAVAVGLKQGKVVITVGDGPGFYTTRI 562

Query:   182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
             LSTMLSEA+R+LQEG  PKDLD+ TK+FGFPVGAATL+DEVGIDVG+HIA DL+K FG+R
Sbjct:   563 LSTMLSEAIRLLQEGVDPKDLDQYTKKFGFPVGAATLADEVGIDVGSHIAVDLAKAFGER 622

Query:   242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             FSGGNL V+N++V  G+L  K+  G +
Sbjct:   623 FSGGNLEVMNDLVLAGFLGRKSGKGIF 649

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISS

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0042060 "wound healing" evidence=IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|P40939 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 109/169 (64%), Positives = 131/169 (77%)

Query:   101 LMGSNGLAMVFPLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAV 159
             +  SN  A+  P+ E   + + P  +IGMHYFSPVDKMQLLEIITTE+TS+DT+ASAVAV
Sbjct:   471 IFASNTSAL--PISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTSASAVAV 528

Query:   160 GLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLS 219
             GLKQGKV+I VKDGPGFYTTR L+ M+SE +RILQEG  PK LD LT  FGFPVGAATL 
Sbjct:   529 GLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDSLTTSFGFPVGAATLV 588

Query:   220 DEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             DEVG+DV  H+A+DL K FG+RF GGN  +L +MV KG+L  K+  G+Y
Sbjct:   589 DEVGVDVAKHVAEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGFY 637

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;TAS

GO:0003985 "acetyl-CoA C-acetyltransferase activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0035965 "cardiolipin acyl-chain remodeling" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1PIP0 HADHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 107/169 (63%), Positives = 130/169 (76%)

Query:   101 LMGSNGLAMVFPLQE-QIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAV 159
             +  SN  A+  P+ E     + P  +IGMHYFSPVDKMQLLEIITT++TS+DT ASAVAV
Sbjct:   456 VFASNTSAL--PINEIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAV 513

Query:   160 GLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLS 219
             GLKQGKV+I VKDGPGFYTTR L+ M+SE +RILQEG  PK LD LT  FGFPVGAATL 
Sbjct:   514 GLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVEPKKLDSLTTSFGFPVGAATLV 573

Query:   220 DEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             DEVG+DV  H+++DL K FG+RF GGN+ +L EMV +G+L  K+  G+Y
Sbjct:   574 DEVGVDVAKHVSEDLGKAFGERFEGGNIELLKEMVSRGFLGRKSGKGFY 622

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q29554 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 107/169 (63%), Positives = 132/169 (78%)

Query:   101 LMGSNGLAMVFPLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAV 159
             +  SN  A+  P+ E   + + P  +IGMHYFSPVDKMQLLEIITTE+TS+D+ ASAV V
Sbjct:   471 VFASNTSAL--PISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAVEV 528

Query:   160 GLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLS 219
             GLKQGKV+I VKDGPGFYTTR L+ M+SE +RILQEG  PK LD LT  FGFPVGAATL 
Sbjct:   529 GLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTTSFGFPVGAATLM 588

Query:   220 DEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             DEVG+DV  H+A++L K FG+RF+GGNL+VL +M+ KG+L  K+  G+Y
Sbjct:   589 DEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGFY 637

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 106/169 (62%), Positives = 132/169 (78%)

Query:   101 LMGSNGLAMVFPLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAV 159
             +  SN  A+  P+ +   + + P  +IGMHYFSPVDKMQLLEIITT++TS+DT ASAVAV
Sbjct:   471 IFASNTSAL--PINQIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAV 528

Query:   160 GLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLS 219
             GL+QGKV+I VKDGPGFYTTR L+ M+SE MRILQEG  PK LD LT  FGFPVGAATL+
Sbjct:   529 GLRQGKVIIVVKDGPGFYTTRCLAPMMSEVMRILQEGVDPKKLDALTTGFGFPVGAATLA 588

Query:   220 DEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             DEVG+DV  H+A+DL K FG+RF GG++ +L +MV KG+L  K+  G+Y
Sbjct:   589 DEVGVDVAQHVAEDLGKAFGERFGGGSVELLKQMVSKGFLGRKSGKGFY 637

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISO

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISO

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

RGD|620512 Hadha "hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit" [Rattus norvegicus (taxid:10116)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 108/169 (63%), Positives = 131/169 (77%)

Query:   101 LMGSNGLAMVFPLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAV 159
             +  SN  A+  P+ +   + Q P  +IGMHYFSPVDKMQLLEIITT++TS+DT ASAVAV
Sbjct:   471 IFASNTSAL--PINQIAAVSQRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAV 528

Query:   160 GLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLS 219
             GLKQGKV+I VKDGPGFYTTR L+ M+SE +RILQEG  PK LD LT  FGFPVGAATL+
Sbjct:   529 GLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDALTTGFGFPVGAATLA 588

Query:   220 DEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             DEVGIDV  H+A+DL K FG+RF GG++ +L  MV KG+L  K+  G+Y
Sbjct:   589 DEVGIDVAQHVAEDLGKAFGERFGGGSVELLKLMVSKGFLGRKSGKGFY 637

GO:0000062 "fatty-acyl-CoA binding" evidence=IDA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IMP;IDA

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=IDA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IMP;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISO;IDA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IDA;TAS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IDA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0032403 "protein complex binding" evidence=IMP

GO:0032868 "response to insulin stimulus" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IDA

GO:0042645 "mitochondrial nucleoid" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

ZFIN|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 106/158 (67%), Positives = 126/158 (79%)

Query:   112 PLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV 170
             P+++   + + P  ++GMHYFSPVDKMQLLEIITT++TS+DT ASAVAVGLKQGKV+I V
Sbjct:   480 PIKDIAAVSKRPDKVVGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAVGLKQGKVIIVV 539

Query:   171 KDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHI 230
              DGPGFYTTR L+ ML+EA+RILQEGT PK LD LT  FGFPVGAATL+DEVGIDV AH+
Sbjct:   540 GDGPGFYTTRCLAPMLAEAVRILQEGTDPKKLDSLTTGFGFPVGAATLADEVGIDVAAHV 599

Query:   231 AKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             A+DL K FG RF GGN+  L  MVEKG+   K+  G Y
Sbjct:   600 AEDLGKAFGSRFGGGNVEFLKSMVEKGFKGRKSGKGCY 637

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

UNIPROTKB|Q3SZ00 HADHA "HADHA protein" [Bos taurus (taxid:9913)]

 Score = 536 (193.7 bits), Expect = 1.3e-51, P = 1.3e-51
 Identities = 105/169 (62%), Positives = 131/169 (77%)

Query:   101 LMGSNGLAMVFPLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAV 159
             +  SN  A+  P+ E   + + P  +IGMHYFSPVDKMQLLEIITTE+TS+DT ASAV V
Sbjct:   471 VFASNTSAL--PIGEIATVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDTTASAVDV 528

Query:   160 GLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLS 219
             GL+QGKV+I VKDGPGFYTTR L+ M+SE +RILQEG  PK LD LT  FGFPVGAATL 
Sbjct:   529 GLRQGKVIIVVKDGPGFYTTRCLTPMMSEVIRILQEGVGPKKLDSLTTSFGFPVGAATLV 588

Query:   220 DEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             DEVG+DV  H+A++L K FG+RF+GG+L +L +M+ KG+L  K+  G+Y
Sbjct:   589 DEVGVDVAKHVAENLGKEFGERFAGGSLEMLQQMISKGFLGRKSGKGFY 637

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NI29 HADHA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 105/169 (62%), Positives = 128/169 (75%)

Query:   101 LMGSNGLAMVFPLQEQIPI-QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAV 159
             +  SN  A+  P+ +   + Q P  +IGMHYFSPVDKMQLLEIITT++TSQDTAASAVAV
Sbjct:   478 IFASNTSAL--PINQIAAVSQRPEKVIGMHYFSPVDKMQLLEIITTDKTSQDTAASAVAV 535

Query:   160 GLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLS 219
             GLKQGKVVI VKDGPGFYTTR L  ML+E  R+LQEG  PK +D ++  FGFPVGAATL 
Sbjct:   536 GLKQGKVVIVVKDGPGFYTTRCLGPMLAEVGRVLQEGIDPKKVDAISTAFGFPVGAATLI 595

Query:   220 DEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             DEVG+DV  H+A+DL K FG+RF GG++ +   MV+KG+L  K   G+Y
Sbjct:   596 DEVGVDVATHVAEDLGKAFGERFGGGSIGLFKLMVQKGFLGRKAGKGFY 644

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]

 Score = 523 (189.2 bits), Expect = 4.4e-50, P = 4.4e-50
 Identities = 100/147 (68%), Positives = 119/147 (80%)

Query:   122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
             P  +IGMHYFSPVDKMQLLEIITT++TS+DT ASAVA+GLKQGK+++ V DGPGFYTTR 
Sbjct:   489 PEKVIGMHYFSPVDKMQLLEIITTDKTSKDTTASAVAIGLKQGKLIVVVGDGPGFYTTRC 548

Query:   182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
             L+ ML+EA+RILQEG  PK LD LT  FGFPVG ATL+DEVGIDV AH+A+DL K FG R
Sbjct:   549 LAPMLAEAVRILQEGVGPKKLDSLTTGFGFPVGLATLADEVGIDVAAHVAEDLGKAFGAR 608

Query:   242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
             F GGN++ L  MV+KG+   K+  G Y
Sbjct:   609 FGGGNVDFLKTMVQKGFKGRKSGKGCY 635

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40939	ECHA_HUMAN	1, ., 1, ., 1, ., 2, 1, 1	0.6449	0.6171	0.2175	yes	N/A
Q64428	ECHA_RAT	1, ., 1, ., 1, ., 2, 1, 1	0.6979	0.5539	0.1952	yes	N/A
Q8BMS1	ECHA_MOUSE	1, ., 1, ., 1, ., 2, 1, 1	0.6845	0.5539	0.1952	yes	N/A
Q29554	ECHA_PIG	1, ., 1, ., 1, ., 2, 1, 1	0.65	0.5910	0.2083	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	269
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	6e-81
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	9e-53
COG1250	307	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li	1e-44
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	3e-38
PRK05808	282	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge	1e-28
PRK09260	288	PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge	1e-26
PRK06035	291	PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas	2e-26
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	3e-26
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	9e-26
pfam00725	97	pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase,	5e-25
PLN02545	295	PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge	2e-22
TIGR02279	503	TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy	2e-16
PRK06130	311	PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge	4e-16
PRK07819	286	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge	2e-15
pfam02737	180	pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas	5e-15
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	7e-14
PRK07530	292	PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge	2e-11
PRK08269	314	PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge	4e-08
PRK08268	507	PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena	1e-07
PRK08293	287	PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge	5e-06
PRK07066	321	PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge	9e-04

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score =  257 bits (658), Expect = 6e-81
 Identities = 99/149 (66%), Positives = 120/149 (80%)

Query: 120 QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT 179
             P  +IGMHYFSPVDKMQLLEIIT + TS+DT ASAVAVGLKQGKVVI VKDGPGFYTT
Sbjct: 463 SRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTT 522

Query: 180 RILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
           R L  ML+E +R+LQEG  PK LD+LT +FGFPVGAATL+DEVG+DV  H+A+DL K FG
Sbjct: 523 RCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLADEVGVDVAEHVAEDLGKAFG 582

Query: 240 DRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           +RF GG+  +L+E+V+ G+L  K+  G +
Sbjct: 583 ERFGGGSAELLSELVKAGFLGRKSGKGIF 611

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  182 bits (463), Expect = 9e-53
 Identities = 69/159 (43%), Positives = 93/159 (58%), Gaps = 9/159 (5%)

Query: 117 IPI-------QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVIT 169
           +PI         P  +IG+HYFSPV+KM L+E+I   +TS +T A+ VA+  KQGK  I 
Sbjct: 428 LPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIV 487

Query: 170 VKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAH 229
           V+DG GFY  RIL+  ++EA R+L EG   + +D    +FGFPVG  TL DEVGIDVG  
Sbjct: 488 VRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVGIDVGTK 547

Query: 230 IAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           I   L    G+RFS       ++++       KN  G+Y
Sbjct: 548 IIPILEAALGERFSAP--AAFDKLLNDDRKGRKNGRGFY 584

Length = 708

>gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

 Score =  152 bits (386), Expect = 1e-44
 Identities = 60/149 (40%), Positives = 91/149 (61%), Gaps = 2/149 (1%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P   IG+H+F+PV  M L+E+I  E+TS +T    V    K GK  + VKD PGF   R+
Sbjct: 133 PERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIVNRL 192

Query: 182 LSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
           L+ +L+EA+R+L+EG  +P+++D   +Q  G P+G   L+D +G+DV  HI K L++T G
Sbjct: 193 LAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIGLDVMLHIMKVLNETLG 252

Query: 240 DRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           D        +L ++VE G L  K+  G+Y
Sbjct: 253 DDPYYRPPPLLRKLVEAGRLGRKSGKGFY 281

Length = 307

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score =  141 bits (357), Expect = 3e-38
 Identities = 74/184 (40%), Positives = 103/184 (55%), Gaps = 5/184 (2%)

Query: 86  QQMSERIYMYTYSERLMGSNGLAMVFPL-QEQIPIQTPHLIIGMHYFSPVDKMQLLEIIT 144
            QM + I     +  +  SN  ++  P+ Q       P  +IG+HYFSPV+KM L+E+I 
Sbjct: 400 HQMVKDIEQECAAHTIFASNTSSL--PIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIP 457

Query: 145 TEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDR 204
              TS+ T A+ VA+  KQGK  I V D  GFY  RIL+  ++EA R+L EG   + +D+
Sbjct: 458 HAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDK 517

Query: 205 LTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNK 264
              +FGFPVG  TL DEVGIDVGA I+  L    G+RF      V ++++       KN 
Sbjct: 518 ALVKFGFPVGPITLLDEVGIDVGAKISPILEAELGERFKAP--AVFDKLLSDDRKGRKNG 575

Query: 265 DGYY 268
            G+Y
Sbjct: 576 KGFY 579

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  109 bits (275), Expect = 1e-28
 Identities = 58/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%)

Query: 120 QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT 179
           + P  +IGMH+F+PV  M+L+EII    TS  T  +  A+  K GK  + VK+ PGF   
Sbjct: 131 KRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFVVN 190

Query: 180 RILSTMLSEAMRILQEGT-SPKDLDRLTKQFG--FPVGAATLSDEVGIDVGAHIAKDLSK 236
           RIL  M++EA+ +L EG  + +D+D   K  G   P+G   L+D +G+D    I + L +
Sbjct: 191 RILIPMINEAIFVLAEGVATAEDIDEGMK-LGCNHPIGPLALADLIGLDTCLAIMEVLYE 249

Query: 237 TFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
            FGD ++    L  L +MV  G+L  K   G+Y
Sbjct: 250 GFGDSKYRPCPL--LRKMVAAGWLGRKTGRGFY 280

Length = 282

>gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score =  104 bits (261), Expect = 1e-26
 Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 7/193 (3%)

Query: 78  EQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKM 137
           E++ ++  + + E    +  +E  + +N   M  P +     + P  +I MH+F+PV KM
Sbjct: 91  EKLELK--KAVFETADAHAPAECYIATNTSTMS-PTEIASFTKRPERVIAMHFFNPVHKM 147

Query: 138 QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT 197
           +L+E+I   +TS +T   A  V  + GK  + V + PGF T+RI + + +EA  +LQEG 
Sbjct: 148 KLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGV 207

Query: 198 -SPKDLDRLTKQ-FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVE 255
            + +D+D+  +    FP+G   L D VG+D   +  K L +T G+++    L  L + V+
Sbjct: 208 ATAEDIDKAIRLGLNFPMGPLELGDLVGLDTRLNNLKYLHETLGEKYRPAPL--LEKYVK 265

Query: 256 KGYLDFKNKDGYY 268
            G L  K   G Y
Sbjct: 266 AGRLGRKTGRGVY 278

Length = 288

>gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated

 Score =  104 bits (260), Expect = 2e-26
 Identities = 59/152 (38%), Positives = 88/152 (57%), Gaps = 10/152 (6%)

Query: 125 IIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILST 184
            IGMH+F+P   M+L+E++    TS++T  + V +  K GK+ I V D PGF+TTR +  
Sbjct: 139 FIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG 198

Query: 185 MLSEAMRILQEGTSP-KDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-R 241
            L EA+R  + G +  KD+D + K  FGFP+G   L D +GID   HIA+ L +  GD +
Sbjct: 199 WLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIGIDTVYHIAEYLYEETGDPQ 258

Query: 242 FSGGNLNVLNEMVEKGYL-----DFKNKDGYY 268
           F     N L +MV  GY+      + +K G++
Sbjct: 259 FIPP--NSLKQMVLNGYVGDKKVKYGSKGGWF 288

Length = 291

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score =  107 bits (269), Expect = 3e-26
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 8/160 (5%)

Query: 117 IPI-------QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVIT 169
           I I       + P    GMH+F+PV +M L+E+I  E+TS +T A+ VA   K GK  I 
Sbjct: 431 ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIV 490

Query: 170 VKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDR-LTKQFGFPVGAATLSDEVGIDVGA 228
           V D PGF+  R+L    +   ++L++G   + +D+ + KQFG+P+G A L D VGID   
Sbjct: 491 VNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAH 550

Query: 229 HIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           H    +++ F DR      + ++ + E      KN  G+Y
Sbjct: 551 HAQAVMAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFY 590

Length = 715

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score =  105 bits (264), Expect = 9e-26
 Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYT 178
           ++ P    GMH+F+PV +M L+E+I  E++S +T A+ VA   K GK  I V D PGF+ 
Sbjct: 440 LKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFV 499

Query: 179 TRILSTMLSEAMRILQEGTSPKDLDR-LTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKT 237
            R+L        ++L++G     +D+ + KQFG+P+G A L D VGID G H    +++ 
Sbjct: 500 NRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVGIDTGHHAQAVMAEG 559

Query: 238 FGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           F DR      + ++ + E   L  KN  G+Y
Sbjct: 560 FPDRMGKDGRDAIDALFEAKRLGQKNGKGFY 590

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

 Score = 95.0 bits (237), Expect = 5e-25
 Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 3/96 (3%)

Query: 175 GFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFPVGAATLSDEVGIDVGAHIAK 232
           GF   R+L+ +L+EA+R+++EG  +P+D+D   +   G P+G   LSD VG+DVG HI +
Sbjct: 1   GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFELSDLVGLDVGYHILE 60

Query: 233 DLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
            L++ FGDR    +  +L ++VE G L  K   G+Y
Sbjct: 61  VLAEEFGDRAYRPSP-LLEKLVEAGRLGRKTGKGFY 95

This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97

>gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase

 Score = 93.6 bits (233), Expect = 2e-22
 Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 5/152 (3%)

Query: 120 QTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT 179
           Q P  +IGMH+ +P   M+L+EII    TS +   +  A+  + GK V+  +D PGF   
Sbjct: 132 QRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPGFIVN 191

Query: 180 RILSTMLSEAMRILQEG-TSPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKT 237
           RIL  M++EA   L  G  S +D+D   K     P+G   L+D +G+D    I K L + 
Sbjct: 192 RILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIGLDTCLSIMKVLHEG 251

Query: 238 FGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
            GD ++    L  L + V+ G L  K+  G Y
Sbjct: 252 LGDSKYRPCPL--LVQYVDAGRLGRKSGRGVY 281

Length = 295

>gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC

 Score = 78.4 bits (193), Expect = 2e-16
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 4/153 (2%)

Query: 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYT 178
           +  P  + G+H+F+P   M L+E+++   T+ + A       L  GK  +     PGF  
Sbjct: 132 LARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGFIV 191

Query: 179 TRILSTMLSEAMRILQEGTS-PKDLDRLTKQ-FGFPVGAATLSDEVGIDVGAHIAKDLSK 236
            R+     +EA+R L+E  + P  LD   +   GFP+G   L+D +G DV   +   +  
Sbjct: 192 NRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIGHDVNFAVTCSVFN 251

Query: 237 TF-GDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
            F  DR    +L V  E+V  G L  K+  G Y
Sbjct: 252 AFWQDRRFLPSL-VQQELVIAGRLGRKSGLGVY 283

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503

>gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 76.0 bits (187), Expect = 4e-16
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 8/153 (5%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTR 180
           P   +G H+F+P D + L+E++  ++TS  T A+ +A+    GK  + V KD PGF   R
Sbjct: 130 PERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANR 189

Query: 181 ILSTMLSEAMRILQEG-TSPKDLDRLTK-QFGFP---VGAATLSDEVGIDVGAHIAKDLS 235
           I   +  EA+ +L++G  S +D+D + K   G      G     D  G+DV   +A  L 
Sbjct: 190 IQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGLDVHLAVASYLY 249

Query: 236 KTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           +   +R       +L E VE G L  K+  G+Y
Sbjct: 250 QDLENR--TTPSPLLEEKVEAGELGAKSGQGFY 280

Length = 311

>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 117 IPIQT-------PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVA-VGLKQGKVVI 168
           IPI         P  ++G+H+F+PV  + L+E++ T  TS+ T A A        GK V+
Sbjct: 124 IPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183

Query: 169 TVKDGPGFYTTRILSTMLSEAMRILQEG-TSPKDLDR-LTKQFGFPVGAATLSDEVGIDV 226
             +D  GF    +L   L  A+R+++ G  + +D+D+ +      P+G   LSD VG+D 
Sbjct: 184 RAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVGLDT 243

Query: 227 GAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
              IA  + + F +  ++   L  L  MVE G L  K+  G+Y
Sbjct: 244 VKAIADSMYEEFKEPLYAPPPL--LLRMVEAGLLGKKSGRGFY 284

Length = 286

>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

 Score = 70.6 bits (174), Expect = 5e-15
 Identities = 22/54 (40%), Positives = 34/54 (62%)

Query: 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD 172
            + P   IG+H+F+P   M L+E++  E+TS +T A+ VA+  K GK  + VKD
Sbjct: 126 TKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKD 179

This family also includes lambda crystallin. Length = 180

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score = 70.6 bits (174), Expect = 7e-14
 Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 2/102 (1%)

Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E+++   T    A +  A+    GK  +  KD PGF   R      
Sbjct: 142 GLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYY 201

Query: 187 SEAMRILQEG-TSPKDLDRLTK-QFGFPVGAATLSDEVGIDV 226
           +EA+R+L+EG   P  +D + +   GF +G   L D +G+DV
Sbjct: 202 TEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIGLDV 243

Length = 507

>gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 7/151 (4%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P   IG+H+ +PV  M+L+E+I    T + T  +A     K GK +   +D P F   RI
Sbjct: 134 PERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFPAFIVNRI 193

Query: 182 LSTMLSEAMRILQEGT-SPKDLDRLTKQFG--FPVGAATLSDEVGIDVGAHIAKDLSKTF 238
           L  M++EA+  L EG  S + +D   K  G   P+G   L+D +G+D    I + L    
Sbjct: 194 LLPMINEAIYTLYEGVGSVEAIDTAMK-LGANHPMGPLELADFIGLDTCLSIMQVLHDGL 252

Query: 239 GD-RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
            D ++    L  L + VE G+L  K   G+Y
Sbjct: 253 ADSKYRPCPL--LVKYVEAGWLGRKTGRGFY 281

Length = 292

>gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 10/157 (6%)

Query: 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYT 178
           +  P   +  H+ +P   M L+E+  ++ T         A+  + GKV +     PG+  
Sbjct: 127 VAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIV 186

Query: 179 TRILSTMLSEAMRILQEG-TSPKDLDRLTKQFGFPVGAATLS-----DEVGIDVGAHIAK 232
            RI +  ++EA R+++EG  S +D+D+  +  GF +  A L      D  G D+  + ++
Sbjct: 187 PRIQALAMNEAARMVEEGVASAEDIDKAIR-TGFGLRFAVLGLLEFIDWGGCDILYYASR 245

Query: 233 DLSKTFG-DRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
            L+   G DRF+     ++   +E+G    +   G+Y
Sbjct: 246 YLAGEIGPDRFAPP--AIVVRNMEEGRDGLRTGAGFY 280

Length = 314

>gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 142 IITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEG-TSPK 200
           ++    TS     +A A+  + GK V  ++D PGF   R ++ +++EA  I Q+G  SP 
Sbjct: 383 LMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGFVAQRTVAMIVNEAADIAQQGIASPA 442

Query: 201 DLDR-LTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD 240
           D+D  +     +P+G     D +G      + ++L   +GD
Sbjct: 443 DIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGD 483

Length = 507

>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 3/144 (2%)

Query: 128 MHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTML 186
           +H+ + + K    EI+    T  +   + VA     G V I + K+ PG+    +L   L
Sbjct: 141 LHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFL 200

Query: 187 SEAMRILQEG-TSPKDLDR-LTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
           S A+ +  +G   P+ +D+      G P+G   + D VG+D   +I  + ++   D  + 
Sbjct: 201 SAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVGLDTAYNITSNWAEATDDENAK 260

Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
               +L E ++KG L     +G+Y
Sbjct: 261 KAAALLKEYIDKGKLGVATGEGFY 284

Length = 287

>gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 125 IIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILS 183
           ++G H F+PV  + L+E++  E+T+ +   +A+ +    G   + V K+ PGF   R+L 
Sbjct: 138 VVG-HPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLE 196

Query: 184 TMLSEAMRILQEGTS 198
            +  EA+ ++ EG +
Sbjct: 197 ALWREALHLVNEGVA 211

Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	100.0
KOG2304|consensus	298		100.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	100.0
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	100.0
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	100.0
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	100.0
KOG2305|consensus	313		100.0
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	100.0
KOG1683|consensus	380		100.0
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	100.0
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	100.0
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.95
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.93
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.7
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.56
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.56
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.42
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.4
KOG1683|consensus	380		98.81
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	98.68
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.62
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.55
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.52
PRK07417	279	arogenate dehydrogenase; Reviewed	98.41
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.97
PLN02688	266	pyrroline-5-carboxylate reductase	97.85
PRK06545	359	prephenate dehydrogenase; Validated	97.84
PRK08655	437	prephenate dehydrogenase; Provisional	97.75
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.65
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.6
PRK08507	275	prephenate dehydrogenase; Validated	97.27
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.99
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.77
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.73
PLN02256	304	arogenate dehydrogenase	96.67
PTZ00117	319	malate dehydrogenase; Provisional	96.64
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.28
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.05
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.02
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.96
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	95.86
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	95.84
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.58
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.5
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	95.46
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	94.87
PRK06223	307	malate dehydrogenase; Reviewed	94.77
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	94.36
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	94.18
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	94.13
PRK07680	273	late competence protein ComER; Validated	94.09
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	93.58
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.34
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.08
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	92.86
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.7
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	92.17
PRK08818	370	prephenate dehydrogenase; Provisional	91.08
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	90.09
PLN02712	667	arogenate dehydrogenase	89.92
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	88.63
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	87.38
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	86.55
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	85.35
PLN02712	667	arogenate dehydrogenase	83.71
PRK15059	292	tartronate semialdehyde reductase; Provisional	83.6
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	83.23
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	82.32
PLN02353	473	probable UDP-glucose 6-dehydrogenase	81.41
COG4074	343	Mth H2-forming N5,N10-methylenetetrahydromethanopt	81.12

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=100.00  E-value=6.7e-63  Score=456.21  Aligned_cols=210  Identities=32%  Similarity=0.572  Sum_probs=198.3

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      -++|++..+++ ++.++|  ||||+|+||+++|  +++|++|+++++||||||||||++  |++++ +.++||+||+|+|
T Consensus        68 l~~i~~~~~~~-~l~~~D--lVIEAv~E~levK--~~vf~~l~~~~~~~aIlASNTSsl--~it~ia~~~~rper~iG~H  140 (307)
T COG1250          68 LARITPTTDLA-ALKDAD--LVIEAVVEDLELK--KQVFAELEALAKPDAILASNTSSL--SITELAEALKRPERFIGLH  140 (307)
T ss_pred             HhhccccCchh-HhccCC--EEEEeccccHHHH--HHHHHHHHhhcCCCcEEeeccCCC--CHHHHHHHhCCchhEEEEe
Confidence            57888888888 786655  9999999999999  999999999999999999999999  77885 6889999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-  207 (269)
                      |||||++|||||||+|.+|++++++++.+|++++||.|++++|.||||+||++.++++||++++.+|+ |+++||++|+ 
T Consensus       141 FfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~  220 (307)
T COG1250         141 FFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQ  220 (307)
T ss_pred             ccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999777999999999999999999999999998 9999999999 


Q ss_pred             hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC--CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD--RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~--~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|+|||||+++|++|+|+.+++++.+++.+++  .|.  +++++++|++.|++|+|||+|||+
T Consensus       221 ~~G~pmGpf~l~D~~GlD~~~~i~~~~~~~~~~~~~~~--~~~~~~~~v~~g~lG~Ksg~GfY~  282 (307)
T COG1250         221 GLGLPMGPFELADLIGLDVMLHIMKVLNETLGDDPYYR--PPPLLRKLVEAGRLGRKSGKGFYD  282 (307)
T ss_pred             ccCCCccHHHHHHHHhHHHHHHHHHHHHHhcCCCcccc--ccHHHHHHHhcccccccCCCccee
Confidence            999999999999999999999999999988884  343  679999999999999999999996

>KOG2304|consensus

Probab=100.00  E-value=8.7e-60  Score=414.33  Aligned_cols=211  Identities=28%  Similarity=0.504  Sum_probs=201.3

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      -.||..++++++++++||  +|+|++.|++|+|  +++|++|+..|+++||++||||++  .++++ .++++|.||.|+|
T Consensus        81 l~ri~~~tnv~~~v~dad--liiEAivEn~diK--~~lF~~l~~~ak~~~il~tNTSSl--~lt~ia~~~~~~srf~GlH  154 (298)
T KOG2304|consen   81 LDRIKTSTNVSDAVSDAD--LIIEAIVENLDIK--RKLFKDLDKIAKSSTILATNTSSL--SLTDIASATQRPSRFAGLH  154 (298)
T ss_pred             HHHHHHcCCHHHhhhhhH--HHHHHHHHhHHHH--HHHHHHHHhhcccceEEeecccce--eHHHHHhhccChhhhceee
Confidence            457889999999997766  9999999999999  999999999999999999999998  56775 6899999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-  207 (269)
                      ||||+..|.|||||+++.||++|......|++.+||+||-+||.||||+||++.++++||+++++.|. |-+|||.+|+ 
T Consensus       155 FfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMkl  234 (298)
T KOG2304|consen  155 FFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKL  234 (298)
T ss_pred             ccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 9999999999 


Q ss_pred             hcCCCchhhHHHHhhchHHHHHHHHHHHHHhC-C-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG-D-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g-~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |.|+||||||+.|.+|+|+...+|+-|++.+. + .|.  |+|++.++|++|++|+|+|+|||+
T Consensus       235 GagyPMGPfEL~DyvGLDt~kfvmdgwhe~~pe~~~f~--psPll~klVaegklGrKtg~GfY~  296 (298)
T KOG2304|consen  235 GAGYPMGPFELADYVGLDTCKFVMDGWHEGYPEDSLFA--PSPLLDKLVAEGKLGRKTGEGFYK  296 (298)
T ss_pred             cCCCCCChHHHHHHhhHHHHHHHHHHHHhcCCcccccC--CChHHHHHHhccccccccCcccee
Confidence            99999999999999999999999999999884 3 676  689999999999999999999995

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=8.6e-57  Score=413.21  Aligned_cols=210  Identities=24%  Similarity=0.430  Sum_probs=199.1

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcC-CCCcEEecCCCCCccccccc-CCCCCCCeEEEe
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYT-YSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGM  128 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~-~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~  128 (269)
                      .++|++++++ ++++++|  +|+|||||++++|  +++|++++++| ++++||+||||++  |++.+ ....+|+|++++
T Consensus        70 ~~~l~~~~~~-~~~~~~d--~ViEav~E~~~~K--~~l~~~l~~~~~~~~~il~snTS~~--~~~~la~~~~~~~r~~g~  142 (286)
T PRK07819         70 LARLRFTTDL-GDFADRQ--LVIEAVVEDEAVK--TEIFAELDKVVTDPDAVLASNTSSI--PIMKLAAATKRPGRVLGL  142 (286)
T ss_pred             HhCeEeeCCH-HHhCCCC--EEEEecccCHHHH--HHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCccEEEE
Confidence            5789999999 6676655  9999999999999  99999999999 9999999999998  77775 688999999999


Q ss_pred             eccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHH-hCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q psy9059         129 HYFSPVDKMQLLEIITTEQTSQDTAASAVAVGL-KQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLT  206 (269)
Q Consensus       129 HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~-~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~  206 (269)
                      |||||++.+|+|||++++.|++++++++..|++ .+||.|++++|.||||+||++.+++|||++|+++|+ |++|||+++
T Consensus       143 hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~  222 (286)
T PRK07819        143 HFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAM  222 (286)
T ss_pred             ecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999999999999999999998 499999999999999999999999999999999999 999999999


Q ss_pred             H-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         207 K-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       207 ~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      + |+|+|+|||+++|.+|+|.+.++++.+++.+++ +|.  +++++++|+++|++|+|+|+|||+
T Consensus       223 ~~g~G~p~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~--p~~~l~~~v~~g~~G~k~g~GfY~  285 (286)
T PRK07819        223 VLGCAHPMGPLRLSDLVGLDTVKAIADSMYEEFKEPLYA--PPPLLLRMVEAGLLGKKSGRGFYT  285 (286)
T ss_pred             HhCCCCCCCHHHHHHHhccHHHHHHHHHHHHHcCCCCCC--CCHHHHHHHHCCCCcccCCCEecc
Confidence            8 999999999999999999999999999999986 676  578999999999999999999995

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=5.9e-57  Score=457.59  Aligned_cols=210  Identities=37%  Similarity=0.592  Sum_probs=200.8

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++|+++++++ +++++|  +|||||||++++|  +++|++|+++|++||||+||||++  |++++ +.+.+|+||+|+|
T Consensus       370 ~~~i~~~~~~~-~~~~ad--lViEav~E~l~~K--~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~~g~H  442 (699)
T TIGR02440       370 MALITGTTDYR-GFKDVD--IVIEAVFEDLALK--HQMVKDIEQECAAHTIFASNTSSL--PIGQIAAAASRPENVIGLH  442 (699)
T ss_pred             HcCeEEeCChH-HhccCC--EEEEeccccHHHH--HHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHhcCCcccEEEEe
Confidence            47899999994 776655  9999999999999  999999999999999999999999  78885 6889999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQF  209 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~  209 (269)
                      |||||+++|+||||+|+.||+++++++.+|++++||.||+++|.||||+|||+.+++|||++++++|++++|||++++++
T Consensus       443 ffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~  522 (699)
T TIGR02440       443 YFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKF  522 (699)
T ss_pred             cCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         210 GFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       210 G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|+|||+++|.+|+|++.++++.+++.+|++|.  +++++++|+++|++|+|||+|||+
T Consensus       523 G~p~GPf~l~D~vGld~~~~i~~~l~~~~~~~~~--~~~~l~~~v~~G~lG~ksg~GfY~  580 (699)
T TIGR02440       523 GFPVGPITLLDEVGIDVGAKISPILEAELGERFK--APAVFDKLLSDDRKGRKNGKGFYL  580 (699)
T ss_pred             CCCcCHHHHHHHhchHHHHHHHHHHHHhcCCCCC--CcHHHHHHHHCCCCcccCCcEEEe
Confidence            9999999999999999999999999999999887  578999999999999999999995

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=1.1e-56  Score=456.40  Aligned_cols=212  Identities=29%  Similarity=0.518  Sum_probs=199.3

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++|+++.++ ++++++|  +|||||+|++++|  +++|++|+++|++||||+||||++  |++++ ..+++|+||+|+|
T Consensus       378 ~~~i~~~~~~-~~~~~aD--lViEav~E~l~~K--~~vf~~l~~~~~~~~ilasnTS~l--~i~~ia~~~~~p~r~ig~H  450 (714)
T TIGR02437       378 LNGITPTLSY-AGFDNVD--IVVEAVVENPKVK--AAVLAEVEQHVREDAILASNTSTI--SISLLAKALKRPENFCGMH  450 (714)
T ss_pred             HhCeEEeCCH-HHhcCCC--EEEEcCcccHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCcccEEEEe
Confidence            4789999999 5675555  9999999999999  999999999999999999999998  88886 6899999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-h
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTK-Q  208 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~-g  208 (269)
                      ||||++.|||||||+|+.||+++++++.+|++++||+||+++|+||||+|||+.++++||++|+++|++++|||++|+ +
T Consensus       451 ff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~  530 (714)
T TIGR02437       451 FFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQ  530 (714)
T ss_pred             cCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             cCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|+|||||+++|.+|+|+..++++.+...+++++...+++++++|+++|++|+|||+|||+
T Consensus       531 ~G~p~GPf~l~D~~Gld~~~~i~~~~~~~~~~~~~~~~~~~l~~~v~~G~lG~K~g~GfY~  591 (714)
T TIGR02437       531 FGWPMGPAYLLDVVGIDTGHHAQAVMAEGFPDRMGKDGRDAIDALFEAKRLGQKNGKGFYA  591 (714)
T ss_pred             CCCccCHHHHHHhhhHHHHHHHHHHHHHhcCcccccchhHHHHHHHHCCCCcccCCCEEEe
Confidence            9999999999999999999999999998888765322468999999999999999999995

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=1.9e-56  Score=454.93  Aligned_cols=212  Identities=28%  Similarity=0.494  Sum_probs=200.0

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++|++++++ ++++++|  +|+|||||++++|  |++|++|+++|+++|||+||||++  |++++ +.+.+|+||+|+|
T Consensus       378 ~~~i~~~~~~-~~~~~aD--lViEav~E~l~~K--~~vf~~l~~~~~~~~ilasNTSsl--~i~~la~~~~~p~r~~g~H  450 (715)
T PRK11730        378 LSSIRPTLDY-AGFERVD--VVVEAVVENPKVK--AAVLAEVEQKVREDTILASNTSTI--SISLLAKALKRPENFCGMH  450 (715)
T ss_pred             HhCeEEeCCH-HHhcCCC--EEEecccCcHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCCccEEEEe
Confidence            5789999999 5676655  9999999999999  999999999999999999999998  88885 6889999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-h
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTK-Q  208 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~-g  208 (269)
                      ||||++.|||||||+|+.||+++++.+.+|++++||.||+++|+||||+|||+.+++|||++|+++|.|++|||++++ +
T Consensus       451 ff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~  530 (715)
T PRK11730        451 FFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQ  530 (715)
T ss_pred             cCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             cCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|+|+|||+++|.+|+|++.+++++++..+++++...+++++++|+++|++|+|||+|||+
T Consensus       531 ~G~~~GP~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~G~~G~k~g~GfY~  591 (715)
T PRK11730        531 FGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPDRMKKDYRDAIDVLFEAKRFGQKNGKGFYR  591 (715)
T ss_pred             CCCccCHHHHHHhhchHHHHHHHHHHHHhcCCccccchhHHHHHHHHCCCCccccCCEeEe
Confidence            9999999999999999999999999999888764333578999999999999999999995

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=1.7e-56  Score=456.17  Aligned_cols=212  Identities=50%  Similarity=0.832  Sum_probs=200.8

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++|+++++++ +++++|  +|||||+|++++|  +++|++|+++|+++|||+||||+|  |++++ +.+.+|+||+|+|
T Consensus       400 ~~~i~~~~~~~-~~~~aD--lViEAv~E~l~~K--~~vf~~l~~~~~~~~ilasNTSsl--~i~~la~~~~~p~r~ig~H  472 (737)
T TIGR02441       400 LSNLTPTLDYS-GFKNAD--MVIEAVFEDLSLK--HKVIKEVEAVVPPHCIIASNTSAL--PIKDIAAVSSRPEKVIGMH  472 (737)
T ss_pred             HhCeEEeCCHH-HhccCC--eehhhccccHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCccceEEEe
Confidence            47899999995 676555  9999999999999  999999999999999999999998  78886 6899999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQF  209 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~  209 (269)
                      ||||++.|||||||++++||+++++++.+|++++||.||+++|+||||+||++.+++|||++|+++|++++|||++++++
T Consensus       473 ff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~  552 (737)
T TIGR02441       473 YFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKF  552 (737)
T ss_pred             ccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             CCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         210 GFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       210 G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|||||+++|.+|+|++.++++++...++++|...+++++++|+++|++|+|||+|||+
T Consensus       553 G~p~GP~~l~D~vGld~~~~v~~~l~~~~~~~~~~~~~~~l~~~v~~G~~G~k~G~GfY~  612 (737)
T TIGR02441       553 GFPVGAATLADEVGVDVAEHVAEDLGKAFGERFGGGSAELLSELVKAGFLGRKSGKGIFI  612 (737)
T ss_pred             CCCCCHHHHHHHhhHHHHHHHHHHHHHhcCcccccccCHHHHHHHHCCCCcccCCCeeEE
Confidence            999999999999999999999999999998887422578999999999999999999995

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=4.9e-56  Score=451.48  Aligned_cols=210  Identities=36%  Similarity=0.604  Sum_probs=200.9

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++|++++++ ++++++|  +|+|||+|++++|  +++|++|+++|+|||||+||||++  |++++ +.+.+|+||+|+|
T Consensus       375 ~~~i~~~~~~-~~~~~aD--lViEav~E~~~~K--~~v~~~le~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~ig~H  447 (708)
T PRK11154        375 MALISGTTDY-RGFKHAD--VVIEAVFEDLALK--QQMVAEVEQNCAPHTIFASNTSSL--PIGQIAAAAARPEQVIGLH  447 (708)
T ss_pred             HhcEEEeCCh-HHhccCC--EEeecccccHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHHhcCcccceEEEe
Confidence            4789999999 6786655  9999999999999  999999999999999999999998  88886 6889999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQF  209 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~  209 (269)
                      ||||++++||||||+|++||+++++.+.+|++++||.|++++|.||||+|||+.+++|||++|+++|++++|||++++++
T Consensus       448 ff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~  527 (708)
T PRK11154        448 YFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKF  527 (708)
T ss_pred             cCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         210 GFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       210 G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |||+|||+++|.+|+|.+.++++.+++.++++|.  +++++++|+++|++|+|||+|||+
T Consensus       528 G~p~GPf~~~D~~Gld~~~~i~~~l~~~~~~~~~--~~~~l~~~v~~g~~G~k~g~GfY~  585 (708)
T PRK11154        528 GFPVGPITLLDEVGIDVGTKIIPILEAALGERFS--APAAFDKLLNDDRKGRKNGRGFYL  585 (708)
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCCC--CCHHHHHHHHCCCCcccCCceEEE
Confidence            9999999999999999999999999999998887  568999999999999999999995

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=4.4e-54  Score=394.11  Aligned_cols=213  Identities=21%  Similarity=0.342  Sum_probs=200.5

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++|+++++++++++++|  +|+||+||++++|  +++|++|++++++++||+||||++  +++++ ..+.+|+|++++|
T Consensus        69 ~~~i~~~~d~~~a~~~aD--lVieavpe~~~~k--~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~r~vg~H  142 (287)
T PRK08293         69 LNRITLTTDLAEAVKDAD--LVIEAVPEDPEIK--GDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPEKFLALH  142 (287)
T ss_pred             HcCeEEeCCHHHHhcCCC--EEEEeccCCHHHH--HHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcccEEEEc
Confidence            478999999999997766  9999999999999  999999999999999999999998  56664 6788999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~  207 (269)
                      ||||++.+|+|||++++.|++++++++.+|++.+||.|+++ +|.||||+||++.+++|||++++++|+ |++|||++|+
T Consensus       143 f~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~  222 (287)
T PRK08293        143 FANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWM  222 (287)
T ss_pred             CCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 799999999999999999999999999 9999999997


Q ss_pred             -hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 -QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 -g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                       |+|+|+|||+++|.+|+|.+.++++++++.+++++...+++++++|+++|++|+|||+|||+
T Consensus       223 ~~~g~~~Gp~~~~D~~Gld~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~~G~k~g~Gfy~  285 (287)
T PRK08293        223 IATGAPMGPFGILDIVGLDTAYNITSNWAEATDDENAKKAAALLKEYIDKGKLGVATGEGFYN  285 (287)
T ss_pred             hccCCCcCHHHHHHHhchHHHHHHHHHHHHHhCCcccccchHHHHHHHHCCCCcccCCCcccc
Confidence             99999999999999999999999999999998854212579999999999999999999996

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=5.5e-54  Score=399.62  Aligned_cols=212  Identities=19%  Similarity=0.340  Sum_probs=200.7

Q ss_pred             CCcCeEEecC--HHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEE
Q psy9059          50 SHTGITYLYT--YSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLII  126 (269)
Q Consensus        50 ~~~~l~~~~~--~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i  126 (269)
                      ..++|+++.+  ..++++++|  +|+|||||++++|  +++|++|++++++++||+||||++  +++++ ..+.||+|++
T Consensus        61 ~~~~i~~~~~~~~~~a~~~aD--~ViEav~E~~~~K--~~~f~~l~~~~~~~~ilaSntS~~--~~~~la~~~~~p~r~~  134 (314)
T PRK08269         61 VLARIAVVARDGAADALADAD--LVFEAVPEVLDAK--REALRWLGRHVDADAIIASTTSTF--LVTDLQRHVAHPERFL  134 (314)
T ss_pred             HHhCeEeecCcchHHHhccCC--EEEECCcCCHHHH--HHHHHHHHhhCCCCcEEEEccccC--CHHHHHhhcCCcccEE
Confidence            3578999976  778897766  9999999999999  999999999999999999999998  77785 6789999999


Q ss_pred             EeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHH
Q psy9059         127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRL  205 (269)
Q Consensus       127 ~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a  205 (269)
                      |+||||||+++|+|||++++.|++++++++..+++.+||.|++++|.|||++||++.++++||++++++|+ ++++||.+
T Consensus       135 g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a  214 (314)
T PRK08269        135 NAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKA  214 (314)
T ss_pred             EEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             HH-hcCCC---chhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         206 TK-QFGFP---VGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       206 ~~-g~G~p---~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      ++ |+|+|   +|||+++|.+|++++.++++.+++.+++ +|.  +++++++|+++|++|+|||+|||+
T Consensus       215 ~~~g~G~~~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~~~~~~~--p~~~l~~~v~~g~~G~ksG~GfY~  281 (314)
T PRK08269        215 IRTGFGLRFAVLGLLEFIDWGGCDILYYASRYLAGEIGPDRFA--PPAIVVRNMEEGRDGLRTGAGFYD  281 (314)
T ss_pred             HHhCCCCCccCcCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHCCCCcccCCCccee
Confidence            98 99999   5999999999999999999999998887 787  579999999999999999999995

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.3e-54  Score=404.75  Aligned_cols=213  Identities=16%  Similarity=0.258  Sum_probs=188.2

Q ss_pred             CCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEe
Q psy9059          50 SHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGM  128 (269)
Q Consensus        50 ~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~  128 (269)
                      ..++|++++|+++++++||  +|||||||++++|  +++|++|++++++++||+||||++  +++++ +.+++|+||+++
T Consensus        67 ~~~~i~~~~~l~~av~~aD--lViEavpE~l~vK--~~lf~~l~~~~~~~aIlaSnTS~l--~~s~la~~~~~p~R~~g~  140 (321)
T PRK07066         67 SPARLRFVATIEACVADAD--FIQESAPEREALK--LELHERISRAAKPDAIIASSTSGL--LPTDFYARATHPERCVVG  140 (321)
T ss_pred             HHhhceecCCHHHHhcCCC--EEEECCcCCHHHH--HHHHHHHHHhCCCCeEEEECCCcc--CHHHHHHhcCCcccEEEE
Confidence            3579999999999997766  9999999999999  999999999999999999999998  67774 789999999999


Q ss_pred             eccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Q psy9059         129 HYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLT  206 (269)
Q Consensus       129 HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~  206 (269)
                      ||||||+++||||||+|++||+++++++.+|++++||.||++ ||+||||+|||+.+++|||++++++|+ |++|||++|
T Consensus       141 HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~  220 (321)
T PRK07066        141 HPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI  220 (321)
T ss_pred             ecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999 899999999999999999999999999 999999999


Q ss_pred             H-hcCCC---chhhHHHHhhchHH-HHHHHHHHHHHhCCCCC-CChhHHHHHHHH------cCCCCCCCCCccC
Q psy9059         207 K-QFGFP---VGAATLSDEVGIDV-GAHIAKDLSKTFGDRFS-GGNLNVLNEMVE------KGYLDFKNKDGYY  268 (269)
Q Consensus       207 ~-g~G~p---~GPf~~~D~~Gld~-~~~~~~~l~~~~g~~~~-~~~~~lL~~lv~------~G~lG~ksG~GFY  268 (269)
                      + |+|+|   +|||+++|++|+|. +.+.++++.+.+...|+ ...+++..++++      ++.+|.+++.++|
T Consensus       221 ~~g~g~r~~~~Gpf~~~Dl~Gld~g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (321)
T PRK07066        221 RFGAGIRWSFMGTFLTYTLAGGDAGMRHFMQQFGPALELPWTKLVAPELTDALIDRVVEGTAEQQGPRSIKALE  294 (321)
T ss_pred             HhCCCCCccCcCHHHHhhhcChHHHHHHHHHHhhhhhhHHHHhcCCCcccHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            8 99998   79999999999997 44444555444321111 013456666666      6899999998886

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=8.7e-52  Score=378.84  Aligned_cols=211  Identities=28%  Similarity=0.464  Sum_probs=200.9

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++++++.+++++++++|  +|+||+||++++|  +.+|++|++++++++||+||||++  +++.+ +.+.+|+|++++|
T Consensus        66 ~~~i~~~~~~~~~~~~aD--~Vi~avpe~~~~k--~~~~~~l~~~~~~~~il~~~tSt~--~~~~l~~~~~~~~r~~g~h  139 (288)
T PRK09260         66 LARLSYSLDLKAAVADAD--LVIEAVPEKLELK--KAVFETADAHAPAECYIATNTSTM--SPTEIASFTKRPERVIAMH  139 (288)
T ss_pred             HhCeEEeCcHHHhhcCCC--EEEEeccCCHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCcccEEEEe
Confidence            457899999999997766  9999999999999  999999999999999999999998  55664 6789999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-  207 (269)
                      ||||++.++|+|+++|+.|++++++++..+++.+||.|++++|.|||++||++.+++|||++++++|+ +++|||++++ 
T Consensus       140 ~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~  219 (288)
T PRK09260        140 FFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRL  219 (288)
T ss_pred             cCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 9999999998 


Q ss_pred             hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|||+|||+++|.+|++.+.++++.+++.++++|.  +++++.+|+++|++|+|||+|||+
T Consensus       220 g~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~g~~G~k~g~Gfy~  279 (288)
T PRK09260        220 GLNFPMGPLELGDLVGLDTRLNNLKYLHETLGEKYR--PAPLLEKYVKAGRLGRKTGRGVYD  279 (288)
T ss_pred             CCCCCCCHHHHHHHhhHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHCCCCccccCCEEEE
Confidence            999999999999999999999999999999999887  578999999999999999999995

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2e-51  Score=376.96  Aligned_cols=209  Identities=33%  Similarity=0.554  Sum_probs=197.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      .++++++++ ++++++|  +|+||+||++++|  +++|++|++++++++||+||||++  +++++ +.+.+|+|++++||
T Consensus        72 ~~i~~~~~~-~~~~~aD--lVieav~e~~~~k--~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf  144 (291)
T PRK06035         72 ARIRTSTSY-ESLSDAD--FIVEAVPEKLDLK--RKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHW  144 (291)
T ss_pred             hCcEeeCCH-HHhCCCC--EEEEcCcCcHHHH--HHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEec
Confidence            467888888 6786655  9999999999999  999999999999999999999998  67775 57789999999999


Q ss_pred             cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-h
Q psy9059         131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-Q  208 (269)
Q Consensus       131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g  208 (269)
                      |||++.+++||+++++.|++++++++.++++.+||.|++++|.|||++||++.+++|||++++++|+ |++|||++++ +
T Consensus       145 ~~P~~~~~~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~  224 (291)
T PRK06035        145 FNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLA  224 (291)
T ss_pred             CCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 9999999997 9


Q ss_pred             cCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCC-----CCccCC
Q psy9059         209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKN-----KDGYYP  269 (269)
Q Consensus       209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ks-----G~GFY~  269 (269)
                      +|+|+|||+++|.+|+|++.++++.+++.+++ +|.  ++++|++|+++|++|+||     |+|||+
T Consensus       225 ~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~--~~~~l~~~v~~g~~G~k~~~~~~g~Gfy~  289 (291)
T PRK06035        225 FGFPMGPFELMDIIGIDTVYHIAEYLYEETGDPQFI--PPNSLKQMVLNGYVGDKKVKYGSKGGWFD  289 (291)
T ss_pred             CCCccCHHHHHHHhhHHHHHHHHHHHHHHcCCCcCC--ccHHHHHHHHCCCCcCCCCCCCCCceeee
Confidence            99999999999999999999999999999987 566  578999999999999999     999995

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=100.00  E-value=1.2e-51  Score=405.01  Aligned_cols=210  Identities=24%  Similarity=0.396  Sum_probs=196.1

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .+++++++++++ +.+  ||+|+|||||++++|  +++|++|+++|++++||+||||++  +++++ +.+.+|+|++|+|
T Consensus        70 ~~~i~~~~~~~~-l~~--aDlVIEav~E~~~vK--~~vf~~l~~~~~~~~IlasnTStl--~i~~iA~~~~~p~r~~G~H  142 (503)
T TIGR02279        70 LKRLIPVTDLHA-LAD--AGLVIEAIVENLEVK--KALFAQLEELCPADTIIASNTSSL--SITAIAAGLARPERVAGLH  142 (503)
T ss_pred             HhccEEeCCHHH-hCC--CCEEEEcCcCcHHHH--HHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCcccceEEEe
Confidence            467899999964 654  559999999999999  999999999999999999999998  66764 6889999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-  207 (269)
                      ||||++.++|||||+|++|++++++++..+++.+||.|++++|.||||+||++.++++||++++++|+ ++++||++++ 
T Consensus       143 Ff~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~  222 (503)
T TIGR02279       143 FFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRD  222 (503)
T ss_pred             ccCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 9999999998 


Q ss_pred             hcCCCchhhHHHHhhchHHHHHHHHHHHHHh-CC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTF-GD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~-g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      ++|+|||||+++|++|+|+.+++++.+++.+ ++ +|.  +++++++|+++|++|+|||+|||+
T Consensus       223 ~~G~~mGPf~l~D~~Gldv~~~v~~~~~~~~~~~~~~~--p~~~~~~~v~~G~lG~KtG~GfY~  284 (503)
T TIGR02279       223 GAGFPMGPFELTDLIGHDVNFAVTCSVFNAFWQDRRFL--PSLVQQELVIAGRLGRKSGLGVYD  284 (503)
T ss_pred             cCCCCcCHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCC--CcHHHHHHHHCCCCccccCCEeee
Confidence            9999999999999999999999999988775 44 676  578899999999999999999995

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2e-51  Score=375.16  Aligned_cols=209  Identities=30%  Similarity=0.518  Sum_probs=197.3

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      .++++++++++ +.++|  +|+|||||++++|  +++|++|++++++++||+||||++  +++.+ +.+.+|+|++++||
T Consensus        69 ~~l~~~~~~~~-~~~aD--lVi~av~e~~~~k--~~~~~~l~~~~~~~~il~s~ts~~--~~~~la~~~~~~~r~ig~h~  141 (282)
T PRK05808         69 ARITGTTDLDD-LKDAD--LVIEAATENMDLK--KKIFAQLDEIAKPEAILATNTSSL--SITELAAATKRPDKVIGMHF  141 (282)
T ss_pred             hCeEEeCCHHH-hccCC--eeeecccccHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHHhhCCCcceEEeec
Confidence            47888988864 66555  9999999999999  999999999999999999999998  67775 67889999999999


Q ss_pred             cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-h
Q psy9059         131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-Q  208 (269)
Q Consensus       131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g  208 (269)
                      +||++.++++||++++.|++++++.+.++++.+||.|+.++|.||||+||++.+++|||++++++|+ |++|||++++ |
T Consensus       142 ~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g  221 (282)
T PRK05808        142 FNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLG  221 (282)
T ss_pred             cCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 9999999998 9


Q ss_pred             cCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|||+|||+++|.+|++.+.++++.+++.+++ +|.  +++++++|+++|++|+|||+|||+
T Consensus       222 ~g~p~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~g~~G~k~g~Gfy~  281 (282)
T PRK05808        222 CNHPIGPLALADLIGLDTCLAIMEVLYEGFGDSKYR--PCPLLRKMVAAGWLGRKTGRGFYD  281 (282)
T ss_pred             CCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCcCC--CCHHHHHHHHCCCCccccCCcccC
Confidence            99999999999999999999999999999986 666  578999999999999999999996

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.6e-49  Score=390.47  Aligned_cols=210  Identities=24%  Similarity=0.458  Sum_probs=195.6

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++++++.++++ +.+  ||+|+|||+|++++|  +.+|++++++|++++||+||||++  +++.+ ..+.+|+|++|+|
T Consensus        72 ~~~i~~~~~~~~-~~~--aDlViEav~E~~~vK--~~vf~~l~~~~~~~ailasntStl--~i~~la~~~~~p~r~~G~h  144 (507)
T PRK08268         72 LARLRPVEALAD-LAD--CDLVVEAIVERLDVK--QALFAQLEAIVSPDCILATNTSSL--SITAIAAALKHPERVAGLH  144 (507)
T ss_pred             HhCeEEeCCHHH-hCC--CCEEEEcCcccHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCcccEEEEe
Confidence            467999999965 545  559999999999999  999999999999999999999999  56665 6889999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-  207 (269)
                      ||||++.++|+||++|+.||+++++++..+++++||.|++++|.||||+||++.++++||++++++|+ ++++||++++ 
T Consensus       145 ff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~  224 (507)
T PRK08268        145 FFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILRE  224 (507)
T ss_pred             ecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 9999999998 


Q ss_pred             hcCCCchhhHHHHhhchHHHHHHHHHHHHHh--CCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTF--GDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~--g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      ++|+|||||+++|.+|+|+.+++++.+...+  +++|.  +++++++|+++|++|+|||+|||+
T Consensus       225 ~~G~~mGPf~l~D~~Gldv~~~v~~~~~~~~~~~~~~~--~~~~~~~lv~~g~lG~ksG~GfY~  286 (507)
T PRK08268        225 AAGFRMGPFELMDLIGLDVNHAVMESVYRQFYQEPRFR--PSLIQQELVAAGRLGRKSGQGFYR  286 (507)
T ss_pred             cCCCCcCHHHHHHHhchHHHHHHHHHHHHHhcCCCcCC--ccHHHHHHHHCCCCccccCCeeeE
Confidence            8999999999999999999999999888765  35776  568999999999999999999995

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=2.7e-49  Score=362.79  Aligned_cols=209  Identities=25%  Similarity=0.401  Sum_probs=196.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      .+++++++++ +++++  |+|+|||||++++|  +.+|++|++++++++||+||||++  +++.+ +.+.+|+|++++||
T Consensus        70 ~~i~~~~~~~-~~~~a--D~Vieavpe~~~~k--~~~~~~l~~~~~~~~ii~s~ts~~--~~s~la~~~~~~~r~~g~h~  142 (292)
T PRK07530         70 ARISTATDLE-DLADC--DLVIEAATEDETVK--RKIFAQLCPVLKPEAILATNTSSI--SITRLASATDRPERFIGIHF  142 (292)
T ss_pred             hCeEeeCCHH-HhcCC--CEEEEcCcCCHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCcccEEEeec
Confidence            5689999985 56555  59999999999999  999999999999999999999998  56664 57889999999999


Q ss_pred             cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-h
Q psy9059         131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-Q  208 (269)
Q Consensus       131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g  208 (269)
                      |||++.++++||++++.|++++++++..+++.+||.|++++|.||||+||++.+++|||++++++|+ +++|||++++ |
T Consensus       143 ~~p~~~~~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g  222 (292)
T PRK07530        143 MNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLG  222 (292)
T ss_pred             cCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 9999999998 9


Q ss_pred             cCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|||+|||+++|.+|++.+.++++.+++.+++ +|.  |++++++|+++|++|+|+|+|||+
T Consensus       223 ~g~~~GP~~~~D~~Gl~~~~~~~~~~~~~~~~~~~~--p~~~l~~~v~~g~~G~k~g~Gfy~  282 (292)
T PRK07530        223 ANHPMGPLELADFIGLDTCLSIMQVLHDGLADSKYR--PCPLLVKYVEAGWLGRKTGRGFYD  282 (292)
T ss_pred             CCCCCCHHHHHHHhhhHHHHHHHHHHHHHcCCCcCC--CCHHHHHHHHCCCCccccCCEeee
Confidence            99999999999999999999999999998886 676  568999999999999999999995

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=100.00  E-value=6e-49  Score=360.93  Aligned_cols=210  Identities=28%  Similarity=0.429  Sum_probs=196.9

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .+++++.+++ ++++++|  +|+|||+|++++|  +.+|+++++++++++||+||||++  +++.+ +.+.+|.|++++|
T Consensus        69 ~~~~~~~~~~-~~~~~aD--~Vieav~e~~~~k--~~v~~~l~~~~~~~~il~s~tS~i--~~~~l~~~~~~~~r~~g~h  141 (295)
T PLN02545         69 LGRIRCTTNL-EELRDAD--FIIEAIVESEDLK--KKLFSELDRICKPSAILASNTSSI--SITRLASATQRPQQVIGMH  141 (295)
T ss_pred             HhceEeeCCH-HHhCCCC--EEEEcCccCHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCcceEEEe
Confidence            3678888887 4676655  9999999999999  999999999999999999999998  66664 5778999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-  207 (269)
                      |+|||+.++++|+++++.|++++++++..+++.+|+.|++++|.||||+||++.+++|||++++++|+ +++|||++++ 
T Consensus       142 ~~~pp~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~  221 (295)
T PLN02545        142 FMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKL  221 (295)
T ss_pred             ccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 9999999998 


Q ss_pred             hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|||+|||+++|.+|++.+.++++.+++.+|+ +|.  +++++++|+++|++|+|||+|||+
T Consensus       222 g~g~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~~--~~~~l~~~~~~g~~G~k~g~Gfy~  282 (295)
T PLN02545        222 GTNHPMGPLHLADFIGLDTCLSIMKVLHEGLGDSKYR--PCPLLVQYVDAGRLGRKSGRGVYH  282 (295)
T ss_pred             ccCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCC--CCHHHHHHHHCCCCcccCCCeeeE
Confidence            999999999999999999999999999999986 677  578999999999999999999995

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=100.00  E-value=1.5e-42  Score=320.20  Aligned_cols=210  Identities=26%  Similarity=0.464  Sum_probs=197.7

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      +++++++++++++.++|  +|++||||+++.|  ++++++++.++++++||+||||++  +++.+ +.+.+++|++++||
T Consensus        65 ~~i~~~~~~~~~~~~aD--lVi~av~~~~~~~--~~v~~~l~~~~~~~~ii~s~tsg~--~~~~l~~~~~~~~~~ig~h~  138 (311)
T PRK06130         65 GRIRMEAGLAAAVSGAD--LVIEAVPEKLELK--RDVFARLDGLCDPDTIFATNTSGL--PITAIAQAVTRPERFVGTHF  138 (311)
T ss_pred             hceEEeCCHHHHhccCC--EEEEeccCcHHHH--HHHHHHHHHhCCCCcEEEECCCCC--CHHHHHhhcCCcccEEEEcc
Confidence            56889999999997766  9999999999999  999999999999999999999998  66665 56778999999999


Q ss_pred             cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059         131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-  207 (269)
Q Consensus       131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-  207 (269)
                      ++|++..+++|+++++.|++++++.+.++++.+|+.|+++ +|.|||++||++.++++||+.++++|+ ++++||.+++ 
T Consensus       139 ~~p~~~~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~  218 (311)
T PRK06130        139 FTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKW  218 (311)
T ss_pred             CCCCccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999 699999999999999999999999998 9999999998 


Q ss_pred             hcCCC---chhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 QFGFP---VGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 g~G~p---~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|+|   +|||+++|.+|++.+.++++.+++.++++|.  +++++++|+++|++|+|+|+|||+
T Consensus       219 ~~g~~~~~~Gp~~~~D~~Gl~~~~~~~~~l~~~~~~~~~--~~~~l~~~~~~g~~G~~~g~gfy~  281 (311)
T PRK06130        219 SLGIRLALTGPLEQRDMNGLDVHLAVASYLYQDLENRTT--PSPLLEEKVEAGELGAKSGQGFYA  281 (311)
T ss_pred             cCCCCccCCCHHHHhhhhccchHHHHHHHHHHhcCCcCC--CCHHHHHHHHcCCccccCCCcCcc
Confidence            99999   6999999999999999999999999988887  578999999999999999999995

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=100.00  E-value=6.8e-37  Score=300.33  Aligned_cols=191  Identities=18%  Similarity=0.321  Sum_probs=170.5

Q ss_pred             cccccCCCCCCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CC
Q psy9059          40 LCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IP  118 (269)
Q Consensus        40 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~  118 (269)
                      .+...++..  .+++++++|++|+++++|  +||||+||++++|  +++|++|++++++++||+||||++  +++.+ +.
T Consensus        56 ~l~~~~~~~--~g~i~~~~~~~ea~~~aD--~Vieavpe~~~vk--~~l~~~l~~~~~~~~iI~SsTsgi--~~s~l~~~  127 (495)
T PRK07531         56 MLTDAPLPP--EGRLTFCASLAEAVAGAD--WIQESVPERLDLK--RRVLAEIDAAARPDALIGSSTSGF--LPSDLQEG  127 (495)
T ss_pred             hhccchhhh--hhceEeeCCHHHHhcCCC--EEEEcCcCCHHHH--HHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhh
Confidence            344444444  678999999999998776  9999999999999  999999999999999999999998  56664 67


Q ss_pred             CCCCCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC
Q psy9059         119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT  197 (269)
Q Consensus       119 ~~~p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi  197 (269)
                      +.+|+|+++.|||||++.+|++|+++|+.|++++++++..|++.+|+.|+++ |+.|||++||++.++++||++|+++|+
T Consensus       128 ~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~  207 (495)
T PRK07531        128 MTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGI  207 (495)
T ss_pred             cCCcceEEEEecCCCcccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCC
Confidence            8899999999999999999999999999999999999999999999999999 899999999999999999999999998


Q ss_pred             -CHHHHHHHHH-hcCCC---chhhHHHHhhchH-HHHHHHHHHHHHh
Q psy9059         198 -SPKDLDRLTK-QFGFP---VGAATLSDEVGID-VGAHIAKDLSKTF  238 (269)
Q Consensus       198 -s~edID~a~~-g~G~p---~GPf~~~D~~Gld-~~~~~~~~l~~~~  238 (269)
                       |+++||.+++ |+|++   +|||+++|+.|++ .+.+.++++...+
T Consensus       208 ~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g~~~g~~~~~~~~~~~~  254 (495)
T PRK07531        208 ATTEEIDDVIRYSFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPCL  254 (495)
T ss_pred             CCHHHHHHHHhhccCCCccccchHHHHHhcCcHHHHHHHHHHhchhh
Confidence             9999999998 88886   7999999999866 4555555554433

>KOG2305|consensus

Probab=100.00  E-value=3.1e-38  Score=278.39  Aligned_cols=166  Identities=18%  Similarity=0.227  Sum_probs=156.6

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccC
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFS  132 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~Hffn  132 (269)
                      .|+-++++.|++.||-  +|||||||+|++|  +++|++||++++|.+|++||||+| .|+...+++.+.+||++.||.|
T Consensus        71 ~is~t~~l~E~vk~Ai--~iQEcvpE~L~lk--k~ly~qlD~i~d~~tIlaSSTSt~-mpS~~s~gL~~k~q~lvaHPvN  145 (313)
T KOG2305|consen   71 LISGTTSLNELVKGAI--HIQECVPEDLNLK--KQLYKQLDEIADPTTILASSTSTF-MPSKFSAGLINKEQCLVAHPVN  145 (313)
T ss_pred             HHhCCccHHHHHhhhh--hHHhhchHhhHHH--HHHHHHHHHhcCCceEEecccccc-ChHHHhhhhhhhhheeEecCCC
Confidence            4566799999999987  9999999999999  999999999999999999999999 3444458999999999999999


Q ss_pred             CCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hc
Q psy9059         133 PVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-QF  209 (269)
Q Consensus       133 P~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g~  209 (269)
                      |||.+||||+||.|.|+|++++++.++++++|..||.. +++-||..||++.|++||..++++.|+ +..|+|.+|. |+
T Consensus       146 PPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GL  225 (313)
T KOG2305|consen  146 PPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGL  225 (313)
T ss_pred             CCcccchheeccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCC
Confidence            99999999999999999999999999999999999999 899999999999999999999999999 9999999998 99


Q ss_pred             CCCc---hhhHHHHhhc
Q psy9059         210 GFPV---GAATLSDEVG  223 (269)
Q Consensus       210 G~p~---GPf~~~D~~G  223 (269)
                      |.|.   ||+|++++..
T Consensus       226 G~RYAflG~lET~HLNA  242 (313)
T KOG2305|consen  226 GPRYAFLGPLETAHLNA  242 (313)
T ss_pred             CcchhcccchhhhhcCc
Confidence            9984   9999999864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.3e-35  Score=271.97  Aligned_cols=197  Identities=16%  Similarity=0.217  Sum_probs=180.4

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++++++.+++++++++|  +|+||+||++++|  +.+|+++++++++++||+||||++  +++.+ +.+.+|.|+++.|
T Consensus        67 ~~~i~~~~~~~~a~~~ad--~Vi~avpe~~~~k--~~~~~~l~~~~~~~~ii~ssts~~--~~~~la~~~~~~~~~~~~h  140 (308)
T PRK06129         67 LARIRVTDSLADAVADAD--YVQESAPENLELK--RALFAELDALAPPHAILASSTSAL--LASAFTEHLAGRERCLVAH  140 (308)
T ss_pred             hcCeEEECcHHHhhCCCC--EEEECCcCCHHHH--HHHHHHHHHhCCCcceEEEeCCCC--CHHHHHHhcCCcccEEEEe
Confidence            356899999999998766  9999999999999  999999999999999999999987  66654 5778999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~  207 (269)
                      ||||++.++++|+++++.|++++++++..|++.+||.|+++ ++.|||++||++.++++||+.++++|+ |+++||.+++
T Consensus       141 p~~p~~~~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~  220 (308)
T PRK06129        141 PINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIR  220 (308)
T ss_pred             cCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 799999999999999999999999998 9999999998


Q ss_pred             -hcCCC---chhhHHHHhh---chHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHH
Q psy9059         208 -QFGFP---VGAATLSDEV---GIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVE  255 (269)
Q Consensus       208 -g~G~p---~GPf~~~D~~---Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~  255 (269)
                       |+|++   +|||+++|..   |.+........++.+.++ .+.  ++++++++++
T Consensus       221 ~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~--~~~~~~~~~~  274 (308)
T PRK06129        221 DGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQ--PVPWDGELVA  274 (308)
T ss_pred             hccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCC--CchhhHHHHH
Confidence             99998   7999999987   888888888888888776 555  5677887776

>KOG1683|consensus

Probab=100.00  E-value=3.4e-37  Score=286.95  Aligned_cols=192  Identities=31%  Similarity=0.502  Sum_probs=177.0

Q ss_pred             CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccCCCCCCcEEEEeCC
Q psy9059          67 SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFSPVDKMQLLEIITT  145 (269)
Q Consensus        67 ~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~HffnP~~~~~lVEiv~~  145 (269)
                      +++|+|+|+|.|++++|  |++|++|+++|+++||+|||||++  |+.++ +++.+|++++++|||+|++.|+|+||+.+
T Consensus        68 ~~~dmvieav~edl~Lk--~~l~~~le~v~~~~~i~gsntSs~--~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~  143 (380)
T KOG1683|consen   68 ANADMVIEAVFEDLELK--HELFKSLEKVEPPKCIRGSNTSSL--DINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA  143 (380)
T ss_pred             cccceeccchhhhHHHH--HHHHHHHHhhcCCcceeeeccccC--ChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence            45669999999999999  999999999999999999999998  88886 79999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHhcCCCchhhHHHHhhch
Q psy9059         146 EQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQE-GTSPKDLDRLTKQFGFPVGAATLSDEVGI  224 (269)
Q Consensus       146 ~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~e-Gis~edID~a~~g~G~p~GPf~~~D~~Gl  224 (269)
                      ..||..++..+.+...++||.|++|.+.+||.+||++.++.+++.+++.+ |++|.+||....-||+|+||+.+.|..|+
T Consensus       144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gf  223 (380)
T KOG1683|consen  144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGF  223 (380)
T ss_pred             cCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCc
Confidence            99999999999999999999999999999999999999999999999988 88999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         225 DVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       225 d~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+..+    +...+++.+.   +.+.++++++|+.|+|||+|||.
T Consensus       224 dv~ea----l~~gl~~~~~---~r~~eel~~~~~~g~kT~kg~y~  261 (380)
T KOG1683|consen  224 DVAEA----LAVGLGDEIG---PRIEEELLEKGRAGIKTGKGIYP  261 (380)
T ss_pred             cHHHH----Hhhccchhcc---chhHHHHHHHHhhhhhccCcccc
Confidence            98644    4444555443   12678999999999999999994

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=100.00  E-value=3.3e-34  Score=282.12  Aligned_cols=161  Identities=19%  Similarity=0.279  Sum_probs=148.9

Q ss_pred             hcCCCCcEEecCCCCCcccccc-cCCCCCCCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy9059          94 MYTYSERLMGSNGLAMVFPLQE-QIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD  172 (269)
Q Consensus        94 ~~~~~~~iiaSnTS~l~~p~~~-~~~~~~p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd  172 (269)
                      ..+++++++++++++.  ..+. .....+|+|++++|||||++.+|+|||+++++||+++++++.+|++++||.|++++|
T Consensus       336 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d  413 (507)
T PRK08268        336 GPSADGLVLLAPTGGD--TTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRD  413 (507)
T ss_pred             ccccccceEeeccCcc--hHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCC
Confidence            4678999999998875  3334 346779999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHH
Q psy9059         173 GPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNV  249 (269)
Q Consensus       173 ~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~l  249 (269)
                      .||||+||++.+++|||++|+++|+ |++|||.+|+ |+|||+|||+++|.+|++.+.++++++++.+|+ +|+  |+++
T Consensus       414 ~~Gfi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~Gld~~~~~~~~l~~~~g~~~~~--p~~l  491 (507)
T PRK08268        414 SPGFVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLGAARILRVLENLQALYGDPRYR--PSPW  491 (507)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhCHHHHHHHHHHHHHHhCCCcCC--cCHH
Confidence            9999999999999999999999999 9999999998 999999999999999999999999999999995 887  5799


Q ss_pred             HHHHHHcCC
Q psy9059         250 LNEMVEKGY  258 (269)
Q Consensus       250 L~~lv~~G~  258 (269)
                      |++|+++|.
T Consensus       492 l~~~v~~G~  500 (507)
T PRK08268        492 LRRRAALGL  500 (507)
T ss_pred             HHHHHHcCC
Confidence            999998754

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=100.00  E-value=3.8e-33  Score=240.68  Aligned_cols=116  Identities=22%  Similarity=0.399  Sum_probs=98.3

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++|++++++++++ ++|  +|+||+||++++|  +++|++|+++|++||||+||||++  +++++ +.+.+|+|++|+|
T Consensus        64 ~~~i~~~~dl~~~~-~ad--lViEai~E~l~~K--~~~~~~l~~~~~~~~ilasnTSsl--~i~~la~~~~~p~R~ig~H  136 (180)
T PF02737_consen   64 LARISFTTDLEEAV-DAD--LVIEAIPEDLELK--QELFAELDEICPPDTILASNTSSL--SISELAAALSRPERFIGMH  136 (180)
T ss_dssp             HHTEEEESSGGGGC-TES--EEEE-S-SSHHHH--HHHHHHHHCCS-TTSEEEE--SSS---HHHHHTTSSTGGGEEEEE
T ss_pred             hhhcccccCHHHHh-hhh--eehhhccccHHHH--HHHHHHHHHHhCCCceEEecCCCC--CHHHHHhccCcCceEEEEe
Confidence            67899999999998 655  9999999999999  999999999999999999999999  78885 7899999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG  173 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~  173 (269)
                      |||||+++|+||||++++|++++++++.+|++++||.|++++|.
T Consensus       137 f~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~D~  180 (180)
T PF02737_consen  137 FFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVVKDT  180 (180)
T ss_dssp             E-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEES-
T ss_pred             cccccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEecCC
Confidence            99999999999999999999999999999999999999999874

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.95  E-value=3.7e-28  Score=188.72  Aligned_cols=93  Identities=45%  Similarity=0.804  Sum_probs=86.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCCC-CCCChhHHHH
Q psy9059         175 GFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR-FSGGNLNVLN  251 (269)
Q Consensus       175 GfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~-~~~~~~~lL~  251 (269)
                      |||+||++.+++|||++++++|+ |++|||++++ |+|+|+|||+++|.+|++++.++++++.+.++++ +.  ++++++
T Consensus         1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~Gl~~~~~~~~~~~~~~~~~~~~--~~~~l~   78 (97)
T PF00725_consen    1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLVGLDVVYHILEYLAAALGDRAFR--PSPLLK   78 (97)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHHHHHHHHHHHHHHHHHHCCGGGS--S-HHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHhCchHHHHHHHHHHHhcCCCcCC--chHHHH
Confidence            89999999999999999999998 9999999998 9999999999999999999999999999999986 54  689999


Q ss_pred             HHHHcCCCCCCCCCccCC
Q psy9059         252 EMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       252 ~lv~~G~lG~ksG~GFY~  269 (269)
                      +|+++|++|+|+|+|||+
T Consensus        79 ~mv~~g~~G~k~g~Gfy~   96 (97)
T PF00725_consen   79 EMVEEGRLGRKSGKGFYD   96 (97)
T ss_dssp             HHHHTT--BGGGTBSSSB
T ss_pred             HHHHCCCCcCcCCCccee
Confidence            999999999999999996

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.93  E-value=1.6e-25  Score=220.42  Aligned_cols=131  Identities=18%  Similarity=0.322  Sum_probs=119.1

Q ss_pred             EEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHH
Q psy9059         126 IGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDR  204 (269)
Q Consensus       126 i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~  204 (269)
                      ++..........+.+||++++.||+++++.+.+|++++||.|++++|+||||+||++.+++|||++++++|+ +++|||.
T Consensus       366 ~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~  445 (503)
T TIGR02279       366 VLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDT  445 (503)
T ss_pred             hHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            333333344445789999999999999999999999999999999999999999999999999999999999 9999999


Q ss_pred             HHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCC
Q psy9059         205 LTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGY  258 (269)
Q Consensus       205 a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~  258 (269)
                      +|+ |+|||+|||+++|.+|+|.+.++++++++.+++ +|+  |+++|++|++.|.
T Consensus       446 a~~~g~G~P~GP~~~~D~~Gld~~~~~l~~l~~~~~~~~~~--p~~~L~~~v~~g~  499 (503)
T TIGR02279       446 AMRLGVNYPYGPLAWAAQLGWQRILRVLENLQHHYGEERYR--PSSLLRRRALLGS  499 (503)
T ss_pred             HHHhCCCCCcCHHHHHHHhCHHHHHHHHHHHHHHcCCCcCC--cCHHHHHHHHcCC
Confidence            998 999999999999999999999999999999984 787  5789999998765

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.70  E-value=3.8e-17  Score=167.58  Aligned_cols=101  Identities=22%  Similarity=0.275  Sum_probs=91.1

Q ss_pred             HHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHH
Q psy9059         154 ASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVG  227 (269)
Q Consensus       154 ~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~  227 (269)
                      +.+.+++.+++|.|+.+++.||||+||++.+++|||++|++|||  +++|||.+|+ |+|||+   |||+++|.+|++.+
T Consensus       625 ~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gld~v  704 (737)
T TIGR02441       625 SDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGADKL  704 (737)
T ss_pred             HHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHH
Confidence            34455666778888766889999999999999999999999998  9999999998 999996   99999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCChhHHHHHHHHc
Q psy9059         228 AHIAKDLSKTFGDRFSGGNLNVLNEMVEK  256 (269)
Q Consensus       228 ~~~~~~l~~~~g~~~~~~~~~lL~~lv~~  256 (269)
                      ++.++.+++.+|++|.  |+++|.+|+++
T Consensus       705 ~~~~~~l~~~~g~~~~--p~~lL~~~~~~  731 (737)
T TIGR02441       705 VDKMEKYAAAYGVQFT--PCQLLLDHAKS  731 (737)
T ss_pred             HHHHHHHHHHhCCCcC--CCHHHHHHHHh
Confidence            9999999999999997  67899999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.56  E-value=8.8e-15  Score=149.73  Aligned_cols=88  Identities=33%  Similarity=0.484  Sum_probs=81.3

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCC
Q psy9059         172 DGPGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGG  245 (269)
Q Consensus       172 d~pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~  245 (269)
                      -.||||+||++.+++|||++|+++||  +++|||.+|+ |+|||+   |||+++|.+|++.+.+.++.++..+|++|.  
T Consensus       613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gld~~~~~~~~l~~~~~~~~~--  690 (708)
T PRK11154        613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGAGEVVAILERLAAQYGDRFT--  690 (708)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCHHHHHHHHHHHHHhcCCccC--
Confidence            36899999999999999999999997  9999999998 999997   999999999999999999999999999887  


Q ss_pred             hhHHHHHHHHcCCCCCCCCCccC
Q psy9059         246 NLNVLNEMVEKGYLDFKNKDGYY  268 (269)
Q Consensus       246 ~~~lL~~lv~~G~lG~ksG~GFY  268 (269)
                      |+++|.+|+++       |++||
T Consensus       691 p~~~l~~~~~~-------~~~f~  706 (708)
T PRK11154        691 PCERLVEMAER-------GESFY  706 (708)
T ss_pred             CCHHHHHHHHc-------CCCCC
Confidence            67899999875       45577

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.56  E-value=1.1e-14  Score=148.98  Aligned_cols=84  Identities=33%  Similarity=0.465  Sum_probs=78.4

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCCh
Q psy9059         173 GPGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGN  246 (269)
Q Consensus       173 ~pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~  246 (269)
                      .+|||+||++.+++|||++++++||  +++|||.+|+ |+|||+   |||+++|.+|+|.++++++.++..+|++|.  |
T Consensus       607 ~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gld~~~~~~~~l~~~~g~~~~--p  684 (699)
T TIGR02440       607 EASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGADNVVKILERLQTQYGDRFT--P  684 (699)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCHHHHHHHHHHHHHHcCCCcC--C
Confidence            5799999999999999999999997  9999999998 999996   999999999999999999999999999887  6


Q ss_pred             hHHHHHHHHcCC
Q psy9059         247 LNVLNEMVEKGY  258 (269)
Q Consensus       247 ~~lL~~lv~~G~  258 (269)
                      +++|.+|+++|+
T Consensus       685 ~~~L~~~~~~~~  696 (699)
T TIGR02440       685 CQRLVAMAAEKQ  696 (699)
T ss_pred             CHHHHHHHHcCC
Confidence            789999997643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.42  E-value=5.3e-13  Score=136.84  Aligned_cols=84  Identities=29%  Similarity=0.478  Sum_probs=75.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhH
Q psy9059         175 GFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLN  248 (269)
Q Consensus       175 GfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~  248 (269)
                      ..|+||++.+++|||++++++|+  +++|||.+|+ |+|||+   |||+++|.+|+|.++++++.+. .++++|.  |++
T Consensus       625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~Gld~~~~~~~~~~-~~~~~~~--p~~  701 (715)
T PRK11730        625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLGVANYVALADKYA-HLGPLYQ--VPE  701 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhCHHHHHHHHHHHH-HcCCCCC--CCH
Confidence            35899999999999999999994  9999999999 999986   9999999999999999999865 5788887  678


Q ss_pred             HHHHHHHcCCCCCCCCCccC
Q psy9059         249 VLNEMVEKGYLDFKNKDGYY  268 (269)
Q Consensus       249 lL~~lv~~G~lG~ksG~GFY  268 (269)
                      +|++|+++       |++||
T Consensus       702 ~L~~~v~~-------~~~f~  714 (715)
T PRK11730        702 GLREMAAN-------GESYY  714 (715)
T ss_pred             HHHHHHHc-------CCCCC
Confidence            99999875       55687

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.40  E-value=1e-12  Score=134.78  Aligned_cols=80  Identities=26%  Similarity=0.431  Sum_probs=72.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhH
Q psy9059         175 GFYTTRILSTMLSEAMRILQEG-T-SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLN  248 (269)
Q Consensus       175 GfI~nRll~al~~EA~~lv~eG-i-s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~  248 (269)
                      ..|+||++.+++|||++|++|| + +++|||.+|. |+|||+   |||+++|.+|++.+.+.++.+. .+|++|.  |++
T Consensus       625 ~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~Gl~~~~~~~~~~~-~~g~~~~--p~~  701 (714)
T TIGR02437       625 EEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIGVANFVALADQYA-ELGALYQ--VTA  701 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCHHHHHHHHHHHH-HhCCCCC--CCH
Confidence            4699999999999999999999 5 9999999998 999997   9999999999999999999654 7898887  678


Q ss_pred             HHHHHHHcC
Q psy9059         249 VLNEMVEKG  257 (269)
Q Consensus       249 lL~~lv~~G  257 (269)
                      +|++|+++|
T Consensus       702 ~l~~~~~~g  710 (714)
T TIGR02437       702 KLREMAKNG  710 (714)
T ss_pred             HHHHHHHcC
Confidence            999998754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG1683|consensus

Probab=98.81  E-value=2.1e-09  Score=101.29  Aligned_cols=76  Identities=29%  Similarity=0.402  Sum_probs=68.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChh
Q psy9059         174 PGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNL  247 (269)
Q Consensus       174 pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~  247 (269)
                      +..+++|++.+++|||+++++||+  +++++|.+.. |+|||.   |||.+.|..|.+.++..|+.+..     |.  |+
T Consensus       293 ~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~~ki~~~l~~~~~-----f~--P~  365 (380)
T KOG1683|consen  293 DEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGADKIVSRLQKWSS-----FE--PC  365 (380)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccChHHHHHHHHHHhc-----CC--HH
Confidence            346899999999999999999998  9999999986 999996   99999999999999999998865     65  78


Q ss_pred             HHHHHHHHc
Q psy9059         248 NVLNEMVEK  256 (269)
Q Consensus       248 ~lL~~lv~~  256 (269)
                      ++|.++.++
T Consensus       366 ~~l~~~a~~  374 (380)
T KOG1683|consen  366 QLLKDHAKS  374 (380)
T ss_pred             HHHHHHHhh
Confidence            999988754

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=98.68  E-value=3.1e-08  Score=90.89  Aligned_cols=144  Identities=13%  Similarity=0.173  Sum_probs=102.0

Q ss_pred             EEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCCCCcEEecCCCCCccccc--cc-CCCCCCCeEEEee
Q psy9059          55 TYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTYSERLMGSNGLAMVFPLQ--EQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        55 ~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~~~~iiaSnTS~l~~p~~--~~-~~~~~p~R~i~~H  129 (269)
                      ...+|..++++++|  +|+.|+|++..+|  .-++.  .+.+.++++++|.. +|+.+ |.+  ++ +.++.+    ++|
T Consensus        44 ~~~~~~~~~~~~aD--ivi~~vp~~~~~~--~v~~~~~~~~~~~~~g~iivd-~st~~-~~~~~~l~~~l~~~----g~~  113 (291)
T TIGR01505        44 VTAETARQVTEQAD--VIFTMVPDSPQVE--EVAFGENGIIEGAKPGKTLVD-MSSIS-PIESKRFAKAVKEK----GID  113 (291)
T ss_pred             cccCCHHHHHhcCC--EEEEecCCHHHHH--HHHcCcchHhhcCCCCCEEEE-CCCCC-HHHHHHHHHHHHHc----CCC
Confidence            34568889997766  9999999988887  66654  36677788888874 44442 432  22 223222    445


Q ss_pred             ccCCC-------CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCc---hhHHHHHHHH----HHHHHHHHH
Q psy9059         130 YFSPV-------DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPG---FYTTRILSTM----LSEAMRILQ  194 (269)
Q Consensus       130 ffnP~-------~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pG---fI~nRll~al----~~EA~~lv~  194 (269)
                      |..+|       .....++++.+  .++++++++..+++.+|+.++.+ ...+|   .++|+++.+.    ++|++.+.+
T Consensus       114 ~~~~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~  191 (291)
T TIGR01505       114 YLDAPVSGGEIGAIEGTLSIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFAS  191 (291)
T ss_pred             EEecCCCCCHHHHhcCCEEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54432       12233566666  46899999999999999999999 44556   4899999877    899998886


Q ss_pred             -cCCCHHHHHHHHH-hcC
Q psy9059         195 -EGTSPKDLDRLTK-QFG  210 (269)
Q Consensus       195 -eGis~edID~a~~-g~G  210 (269)
                       .|+++++++.++. +.|
T Consensus       192 ~~Gid~~~~~~~l~~~~~  209 (291)
T TIGR01505       192 KAGVDPVRVRQALRGGLA  209 (291)
T ss_pred             HcCCCHHHHHHHHhcCcc
Confidence             5679999999997 654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.62  E-value=8.6e-10  Score=106.97  Aligned_cols=108  Identities=15%  Similarity=0.106  Sum_probs=87.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecC----------CCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCC
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQ----------EQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQ  120 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vp----------E~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~  120 (269)
                      .+++.++|+.+|++|||  +|+++++          |++++|  +.+|+++++.+++++++.||+|..  .+.++ ..+.
T Consensus        60 ~~I~~ttD~~eal~~AD--~Vi~ai~~~~~~~~~~de~i~~K--~g~~~~~~~t~g~ggi~~~~~s~~--~i~~ia~~i~  133 (423)
T cd05297          60 LKIEATTDRREALDGAD--FVINTIQVGGHEYTETDFEIPEK--YGYYQTVGDTSGPGGIFRALRTIP--VLLDIARDIE  133 (423)
T ss_pred             eEEEEeCCHHHHhcCCC--EEEEeeEecCccchhhhhhhHHH--cCeeeeccCCCcHHHHHHHHhhHH--HHHHHHHHHH
Confidence            67889999999998877  9999998          568888  999999999999999999999986  45554 3443


Q ss_pred             --CCCeEEEeeccCCCCCC-----cEEEEeCCCCCCHHHHHHHHHHHHhCCcEE
Q psy9059         121 --TPHLIIGMHYFSPVDKM-----QLLEIITTEQTSQDTAASAVAVGLKQGKVV  167 (269)
Q Consensus       121 --~p~R~i~~HffnP~~~~-----~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~p  167 (269)
                        .| +.+++||+||+..+     +..+ ++.-.|...+......+++.+|+.|
T Consensus       134 ~~~p-~a~~i~~tNPv~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~  185 (423)
T cd05297         134 ELCP-DAWLLNYANPMAELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP  185 (423)
T ss_pred             HHCC-CCEEEEcCChHHHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence              37 99999999999887     6666 4444455456677777888888754

linked to 3D####ucture

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.55  E-value=1.7e-07  Score=86.04  Aligned_cols=147  Identities=12%  Similarity=0.118  Sum_probs=105.0

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCCCCcEEecCCCCCccccc--cc-CCCCCCCeEEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTYSERLMGSNGLAMVFPLQ--EQ-IPIQTPHLIIG  127 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~~~~iiaSnTS~l~~p~~--~~-~~~~~p~R~i~  127 (269)
                      +.+++++++|++.++|  +|+.++|+...+|  .-++.  .+.+.++++++|. ++|+.+ |.+  .+ +.+..+    +
T Consensus        45 g~~~~~~~~e~~~~~d--~vi~~vp~~~~~~--~v~~~~~~~~~~~~~g~iii-d~st~~-~~~~~~l~~~~~~~----g  114 (296)
T PRK11559         45 GAETASTAKAVAEQCD--VIITMLPNSPHVK--EVALGENGIIEGAKPGTVVI-DMSSIA-PLASREIAAALKAK----G  114 (296)
T ss_pred             CCeecCCHHHHHhcCC--EEEEeCCCHHHHH--HHHcCcchHhhcCCCCcEEE-ECCCCC-HHHHHHHHHHHHHc----C
Confidence            3467789999997766  9999999987777  66653  4677788888887 444442 422  12 222221    5


Q ss_pred             eeccCCCCC-------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchh---HHHHHHH----HHHHHHHH
Q psy9059         128 MHYFSPVDK-------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFY---TTRILST----MLSEAMRI  192 (269)
Q Consensus       128 ~HffnP~~~-------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI---~nRll~a----l~~EA~~l  192 (269)
                      +||.++|-.       ...++++.|  +++++++++..+++.+|+.++.+ ...+|++   +|+++.+    +++|++.+
T Consensus       115 ~~~~d~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l  192 (296)
T PRK11559        115 IEMLDAPVSGGEPKAIDGTLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVL  192 (296)
T ss_pred             CcEEEcCCCCCHHHHhhCcEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677665422       134567766  36899999999999999999988 4567775   7887666    57999998


Q ss_pred             HH-cCCCHHHHHHHHH-hcCC
Q psy9059         193 LQ-EGTSPKDLDRLTK-QFGF  211 (269)
Q Consensus       193 v~-eGis~edID~a~~-g~G~  211 (269)
                      .+ .|+++++++.+++ +++.
T Consensus       193 ~~~~Gi~~~~~~~~l~~~~~~  213 (296)
T PRK11559        193 ATKAGVNPDLVYQAIRGGLAG  213 (296)
T ss_pred             HHHcCCCHHHHHHHHhcCccc
Confidence            87 5679999999987 6553

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.52  E-value=4.3e-07  Score=86.84  Aligned_cols=105  Identities=10%  Similarity=0.095  Sum_probs=83.2

Q ss_pred             cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCCCCCC
Q psy9059          58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKM  137 (269)
Q Consensus        58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~~~  137 (269)
                      .+.++++.++|  +|++|+|++.  .  .++++++.. +++++|+..+||.=+.++..+... .+.+|++.||.+++...
T Consensus       134 ~~~~~~~~~aD--lVilavP~~~--~--~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~-~~~~fvg~HPm~G~~~~  205 (374)
T PRK11199        134 DRAEDILADAG--MVIVSVPIHL--T--EEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAA-HSGPVLGLHPMFGPDVG  205 (374)
T ss_pred             hhHHHHHhcCC--EEEEeCcHHH--H--HHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHh-CCCCEEeeCCCCCCCCc
Confidence            36778887665  9999999964  5  889999999 899999999988521134443222 23479999999988776


Q ss_pred             cEEE--EeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         138 QLLE--IITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       138 ~lVE--iv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      .+.+  ++..+.|+++.++.+.++++.+|..++.+
T Consensus       206 ~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~  240 (374)
T PRK11199        206 SLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRI  240 (374)
T ss_pred             ccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEEC
Confidence            6665  67778889999999999999999999988

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.41  E-value=6.6e-06  Score=75.33  Aligned_cols=169  Identities=14%  Similarity=0.073  Sum_probs=101.3

Q ss_pred             HHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccCCCC----
Q psy9059          61 SERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFSPVD----  135 (269)
Q Consensus        61 ~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~HffnP~~----  135 (269)
                      .+++.++|  +|+.|+|++..    .+++++|.++++++++|.. ++|.  +.+.. ....++.+++++||.....    
T Consensus        52 ~~~~~~aD--lVilavp~~~~----~~~~~~l~~~l~~~~ii~d-~~Sv--k~~~~~~~~~~~~~~v~~HPm~G~~~~g~  122 (279)
T PRK07417         52 LSLLKDCD--LVILALPIGLL----LPPSEQLIPALPPEAIVTD-VGSV--KAPIVEAWEKLHPRFVGSHPMAGTAESGV  122 (279)
T ss_pred             HhHhcCCC--EEEEcCCHHHH----HHHHHHHHHhCCCCcEEEe-Ccch--HHHHHHHHHHhhCCceeeCCcCCCCcchH
Confidence            35676655  99999998543    4578899999999999854 4444  33332 2223455899999954332    


Q ss_pred             --------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe-ccCchhHHHH--HHHHHHHHH-HHHHcCCCHHHHH
Q psy9059         136 --------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK-DGPGFYTTRI--LSTMLSEAM-RILQEGTSPKDLD  203 (269)
Q Consensus       136 --------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk-d~pGfI~nRl--l~al~~EA~-~lv~eGis~edID  203 (269)
                              .-+.+-+++++.++++.++.+..+++.+|+.++.+. +..+.++-.+  +..++..++ ..+...-+.+..+
T Consensus       123 ~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~  202 (279)
T PRK07417        123 EAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLK  202 (279)
T ss_pred             HHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhH
Confidence                    234455899999999999999999999999999883 2222222221  111222221 1111111222223


Q ss_pred             HHH--HhcCCCc-------hhhHHHHhhchH--HHHHHHHHHHHHh
Q psy9059         204 RLT--KQFGFPV-------GAATLSDEVGID--VGAHIAKDLSKTF  238 (269)
Q Consensus       204 ~a~--~g~G~p~-------GPf~~~D~~Gld--~~~~~~~~l~~~~  238 (269)
                      .+.  .|-||+.       .|-.|.|..--+  .+.+.++.+.+.+
T Consensus       203 ~~~~~~~~gfrd~tRia~~~p~~w~~i~~~N~~~i~~~l~~~~~~l  248 (279)
T PRK07417        203 LAQNLASSGFADTSRVGGGNPELGVMMAEYNRAALLRSLASYRQSL  248 (279)
T ss_pred             HhhhhccCcccccccccCCChHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            223  3778872       677777776544  3445555554443

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.97  E-value=7e-05  Score=71.05  Aligned_cols=113  Identities=12%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc--c-c-CCCCCCCeEEE
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ--E-Q-IPIQTPHLIIG  127 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~--~-~-~~~~~p~R~i~  127 (269)
                      .+++.++|..+++.++|  +|+.++|... ..  ++++..|..+++++++|. ++|+.+ |..  + + ..+..+.+.++
T Consensus        67 ~Gi~~asd~~eaa~~AD--vVIlaVP~~~-~v--~~Vl~~L~~~L~~g~IVI-d~ST~~-~~~~s~~l~~~l~~~~~~~g  139 (342)
T PRK12557         67 AGVKVVSDDAEAAKHGE--IHILFTPFGK-KT--VEIAKNILPHLPENAVIC-NTCTVS-PVVLYYSLEGELRTKRKDVG  139 (342)
T ss_pred             CCCEEeCCHHHHHhCCC--EEEEECCCcH-HH--HHHHHHHHhhCCCCCEEE-EecCCC-HHHHHHHHHHHhcccccccC
Confidence            34788889999987766  9999999643 35  789999999999998877 455542 321  2 2 23444556778


Q ss_pred             eeccCCCCC----CcEEEEeCCCCC------CHHHHHHHHHHHHhCCcEEEEEe
Q psy9059         128 MHYFSPVDK----MQLLEIITTEQT------SQDTAASAVAVGLKQGKVVITVK  171 (269)
Q Consensus       128 ~HffnP~~~----~~lVEiv~~~~T------s~e~~~~~~~~~~~lGk~pv~vk  171 (269)
                      +|+++|...    .--++++.+..|      +++.++++..+++.+|+.++++.
T Consensus       140 i~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~  193 (342)
T PRK12557        140 ISSMHPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP  193 (342)
T ss_pred             eeecCCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence            888777542    122457765544      89999999999999999997775

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.85  E-value=0.00027  Score=63.72  Aligned_cols=143  Identities=11%  Similarity=0.077  Sum_probs=97.0

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF  131 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff  131 (269)
                      +++.+++..|++.++|  +|+.|++  .+..  .+++.++...++++.+|.|.+++.  +++.+. ..... +++.++|.
T Consensus        48 g~~~~~~~~e~~~~aD--vVil~v~--~~~~--~~vl~~l~~~~~~~~~iIs~~~g~--~~~~l~~~~~~~-~vvr~mP~  118 (266)
T PLN02688         48 GVKTAASNTEVVKSSD--VIILAVK--PQVV--KDVLTELRPLLSKDKLLVSVAAGI--TLADLQEWAGGR-RVVRVMPN  118 (266)
T ss_pred             CCEEeCChHHHHhcCC--EEEEEEC--cHHH--HHHHHHHHhhcCCCCEEEEecCCC--cHHHHHHHcCCC-CEEEECCC
Confidence            3566778889887666  9999995  4556  888899988888888888888887  555543 23322 77778887


Q ss_pred             CCCCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCcEEEEEec--------cCchhHHHHHHHHHHHHH--HHHHcCCCHH
Q psy9059         132 SPVDKMQLLE-IITTEQTSQDTAASAVAVGLKQGKVVITVKD--------GPGFYTTRILSTMLSEAM--RILQEGTSPK  200 (269)
Q Consensus       132 nP~~~~~lVE-iv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd--------~pGfI~nRll~al~~EA~--~lv~eGis~e  200 (269)
                      .|.....-+. ++.+..++++..+.+..++..+|+ ++.+.|        ..|. ...+ .+.+.+++  ...+.|++++
T Consensus       119 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~-g~a~-~~~~~~a~~ea~~~~Gl~~~  195 (266)
T PLN02688        119 TPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGS-GPAY-IFLAIEALADGGVAAGLPRD  195 (266)
T ss_pred             cHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcC-HHHH-HHHHHHHHHHHHHHcCCCHH
Confidence            7765443333 556788899999999999999999 776643        1111 1111 22222222  2566888888


Q ss_pred             HHHHHHH
Q psy9059         201 DLDRLTK  207 (269)
Q Consensus       201 dID~a~~  207 (269)
                      +.-.++.
T Consensus       196 ~a~~~~~  202 (266)
T PLN02688        196 VALSLAA  202 (266)
T ss_pred             HHHHHHH
Confidence            8776653

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.84  E-value=0.00039  Score=66.10  Aligned_cols=175  Identities=9%  Similarity=0.015  Sum_probs=108.2

Q ss_pred             EecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHh-cCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc-C
Q psy9059          56 YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYM-YTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF-S  132 (269)
Q Consensus        56 ~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~-~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff-n  132 (269)
                      ..+++.+++.++|  +|+.|+|.+  ..  .++++++.. ..++++|+...+|.=.-++..+. ...+..|+++.||. +
T Consensus        50 ~~~~~~~~~~~aD--lVilavP~~--~~--~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG  123 (359)
T PRK06545         50 LAADLQRAAAEAD--LIVLAVPVD--AT--AALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAG  123 (359)
T ss_pred             cccCHHHHhcCCC--EEEEeCCHH--HH--HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCc
Confidence            4567888887665  999999995  46  899999997 47889999765554210222232 23567899999983 3


Q ss_pred             CC---------CC--CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHH--HHHHHHHHHHHHcCCC
Q psy9059         133 PV---------DK--MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRIL--STMLSEAMRILQEGTS  198 (269)
Q Consensus       133 P~---------~~--~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll--~al~~EA~~lv~eGis  198 (269)
                      +.         .+  ....=|++++.++++.++.+.++++.+|+.|+.+ .+....++.++.  -.++.+++ ....+-+
T Consensus       124 ~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al-~~~~~~~  202 (359)
T PRK06545        124 SHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSL-AARLAGE  202 (359)
T ss_pred             CchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHH-HHhhccC
Confidence            21         11  1223488999999999999999999999999988 444445555443  33444444 1112222


Q ss_pred             HHHHHHHHHhcCCC-------chhhHHHHhhchH--HHHHHHHHHHHHh
Q psy9059         199 PKDLDRLTKQFGFP-------VGAATLSDEVGID--VGAHIAKDLSKTF  238 (269)
Q Consensus       199 ~edID~a~~g~G~p-------~GPf~~~D~~Gld--~~~~~~~~l~~~~  238 (269)
                      .++. .-+.+-||+       --|=.|.|..--.  .+...++.+.+.+
T Consensus       203 ~~~~-~~la~~gfrd~tRia~~~p~~w~di~~~N~~~~~~~l~~~~~~l  250 (359)
T PRK06545        203 HPLA-LRLAAGGFRDITRIASSDPGMWRDILESNAEALLDALDEWIEDL  250 (359)
T ss_pred             chHH-HhhhcccccCCccccCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            2111 112255665       1666677766433  3444455554443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.75  E-value=0.0011  Score=64.78  Aligned_cols=112  Identities=14%  Similarity=0.100  Sum_probs=85.5

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF  131 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff  131 (269)
                      ++.++.+..+++.++|  +|+-|+|-  +.-  .++++++.++++++++|.+.+|.-..++..+. ......++++.||.
T Consensus        45 gv~~~~~~~e~~~~aD--vVIlavp~--~~~--~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPm  118 (437)
T PRK08655         45 GVEYANDNIDAAKDAD--IVIISVPI--NVT--EDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPM  118 (437)
T ss_pred             CCeeccCHHHHhccCC--EEEEecCH--HHH--HHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCC
Confidence            3467778899997766  99999997  344  67889999999999999988874211333332 33444689999974


Q ss_pred             C----CCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         132 S----PVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       132 n----P~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      .    |......+-+++++.++++.++.+.++++.+|..++.+
T Consensus       119 aGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~  161 (437)
T PRK08655        119 FGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVT  161 (437)
T ss_pred             CCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence            2    33345667789998899999999999999999999877

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.65  E-value=0.00077  Score=62.41  Aligned_cols=108  Identities=11%  Similarity=0.047  Sum_probs=78.7

Q ss_pred             EecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccc-cccc-CCCCCCCeEEEeeccCC
Q psy9059          56 YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFP-LQEQ-IPIQTPHLIIGMHYFSP  133 (269)
Q Consensus        56 ~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p-~~~~-~~~~~p~R~i~~HffnP  133 (269)
                      ...+..+++.++|  +|+.|+|.  ...  .+++.++..+++++++|...+|.= .. +..+ ......-|+++.||...
T Consensus        56 ~~~~~~~~~~~aD--vViiavp~--~~~--~~v~~~l~~~l~~~~iv~dvgs~k-~~~~~~~~~~~~~~~~~v~~hPm~g  128 (307)
T PRK07502         56 VTTSAAEAVKGAD--LVILCVPV--GAS--GAVAAEIAPHLKPGAIVTDVGSVK-ASVIAAMAPHLPEGVHFIPGHPLAG  128 (307)
T ss_pred             ecCCHHHHhcCCC--EEEECCCH--HHH--HHHHHHHHhhCCCCCEEEeCccch-HHHHHHHHHhCCCCCeEEeCCCCCC
Confidence            4567888887655  99999997  345  788899988889998886554421 11 2222 23334458999999875


Q ss_pred             CCCC------------cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         134 VDKM------------QLLEIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       134 ~~~~------------~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      ....            ..+.+++...++++.++.+.++++.+|..++.+
T Consensus       129 ~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~  177 (307)
T PRK07502        129 TEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEM  177 (307)
T ss_pred             CcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence            4321            235677888889999999999999999999987

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.60  E-value=0.001  Score=59.95  Aligned_cols=143  Identities=10%  Similarity=0.063  Sum_probs=91.0

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn  132 (269)
                      +....+..+.+..+|  +|+.|+|-.  .=  +++.+++..++  +.+|.|.++++  +.+.+. ...+..|++.+||..
T Consensus        50 ~~~~~~~~~~~~~ad--vVil~v~~~--~~--~~v~~~l~~~~--~~~vvs~~~gi--~~~~l~~~~~~~~~iv~~~P~~  119 (267)
T PRK11880         50 VRAATDNQEAAQEAD--VVVLAVKPQ--VM--EEVLSELKGQL--DKLVVSIAAGV--TLARLERLLGADLPVVRAMPNT  119 (267)
T ss_pred             CeecCChHHHHhcCC--EEEEEcCHH--HH--HHHHHHHHhhc--CCEEEEecCCC--CHHHHHHhcCCCCcEEEecCCc
Confidence            455678888886655  999999652  12  35666666655  56777888887  555543 445567999999988


Q ss_pred             CCCCCcEE-EEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc--Cchh-HH----HHHHHHHHHHH-HHHHcCCCHHHHH
Q psy9059         133 PVDKMQLL-EIITTEQTSQDTAASAVAVGLKQGKVVITVKDG--PGFY-TT----RILSTMLSEAM-RILQEGTSPKDLD  203 (269)
Q Consensus       133 P~~~~~lV-Eiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~--pGfI-~n----Rll~al~~EA~-~lv~eGis~edID  203 (269)
                      |.....-+ -++++..++++..+.+.++++.+|..+.+..+.  .... ..    -.+..++.... +..+.|+++++.-
T Consensus       120 p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~  199 (267)
T PRK11880        120 PALVGAGMTALTANALVSAEDRELVENLLSAFGKVVWVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQAR  199 (267)
T ss_pred             hHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCeEEEECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            76544434 467888899999999999999999744333221  1111 00    11122332222 3355788887766


Q ss_pred             HHH
Q psy9059         204 RLT  206 (269)
Q Consensus       204 ~a~  206 (269)
                      +.+
T Consensus       200 ~~~  202 (267)
T PRK11880        200 KLA  202 (267)
T ss_pred             HHH
Confidence            554

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.27  E-value=0.0073  Score=55.03  Aligned_cols=105  Identities=9%  Similarity=0.087  Sum_probs=73.9

Q ss_pred             ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc-cCCCCCCCeEEEeeccC---
Q psy9059          57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-QIPIQTPHLIIGMHYFS---  132 (269)
Q Consensus        57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~~~~~~p~R~i~~Hffn---  132 (269)
                      ..+..++. +  ||+|+-|+|..  .-  .+++.++.+ ++++++|.+.+|+-. ++.. +... .+.++++.||..   
T Consensus        50 ~~~~~~~~-~--aD~Vilavp~~--~~--~~~~~~l~~-l~~~~iv~d~gs~k~-~i~~~~~~~-~~~~~v~~hPmaG~e  119 (275)
T PRK08507         50 IVSFEELK-K--CDVIFLAIPVD--AI--IEILPKLLD-IKENTTIIDLGSTKA-KIIESVPKH-IRKNFIAAHPMAGTE  119 (275)
T ss_pred             cCCHHHHh-c--CCEEEEeCcHH--HH--HHHHHHHhc-cCCCCEEEECccchH-HHHHHHHHh-cCCCEEecCCcCcCc
Confidence            34666754 3  55999999974  33  567778877 788888877555431 2222 2222 346899999963   


Q ss_pred             ---CCC------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy9059         133 ---PVD------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK  171 (269)
Q Consensus       133 ---P~~------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk  171 (269)
                         |..      .-..+-+++++.++++.++.+..+++.+|..++.+.
T Consensus       120 ~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~  167 (275)
T PRK08507        120 NSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD  167 (275)
T ss_pred             hhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence               322      234677888888999999999999999999999883

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.99  E-value=0.011  Score=61.04  Aligned_cols=108  Identities=9%  Similarity=0.067  Sum_probs=79.5

Q ss_pred             ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CC-CCCCeEEEeeccCCC
Q psy9059          57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PI-QTPHLIIGMHYFSPV  134 (269)
Q Consensus        57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~-~~p~R~i~~HffnP~  134 (269)
                      ..++.+++.++|  +|+.|+|..  .-  .++++++.++.+++++|...+|.-+-++..+. .. ..+.|+++.||..-.
T Consensus        54 ~~~~~~~~~~aD--vVilavp~~--~~--~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~  127 (735)
T PRK14806         54 EEDLAEAVSGAD--VIVLAVPVL--AM--EKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGS  127 (735)
T ss_pred             cCCHHHHhcCCC--EEEECCCHH--HH--HHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcC
Confidence            457888887766  999999974  45  89999999999999888755443100233332 22 236799999996411


Q ss_pred             C------------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         135 D------------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       135 ~------------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      .            .-..+.++++..++++..+.+.++++.+|+.++.+
T Consensus       128 ~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~  175 (735)
T PRK14806        128 EKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHM  175 (735)
T ss_pred             CcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence            1            23456889999999999999999999999999888

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.77  E-value=0.00053  Score=64.49  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=55.4

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeec-------------------CCCcCCCchhHHHHHHHhcCCC-CcEEecCCCCCcc
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPL-------------------QEQIPIQTPQQMSERIYMYTYS-ERLMGSNGLAMVF  111 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~v-------------------pE~l~~K~k~~l~~~l~~~~~~-~~iiaSnTS~l~~  111 (269)
                      .+++.+.++ +++.|||  +|++++                   .++.+++  +++..+|.+++|+ -.|++||++.+  
T Consensus        61 ~~I~~~~d~-~~l~~aD--iVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~--~~i~~~i~~~~p~a~~iv~sNP~di--  133 (321)
T PTZ00082         61 SKVIGTNNY-EDIAGSD--VVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIM--DEVAEGIKKYCPNAFVIVITNPLDV--  133 (321)
T ss_pred             eEEEECCCH-HHhCCCC--EEEECCCCCCCCCCCcCCCCHHHHHHHHHHHH--HHHHHHHHHHCCCeEEEEecCcHHH--
Confidence            467766788 5787766  999966                   6677788  9999999999987 58999999987  


Q ss_pred             ccccc-CCCCCC-CeEEEee
Q psy9059         112 PLQEQ-IPIQTP-HLIIGMH  129 (269)
Q Consensus       112 p~~~~-~~~~~p-~R~i~~H  129 (269)
                      ....+ ...+.| +|++|++
T Consensus       134 ~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082        134 MVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             HHHHHHHhcCCChhhEEEec
Confidence            33333 445665 8999998

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.73  E-value=0.00052  Score=63.51  Aligned_cols=72  Identities=21%  Similarity=0.244  Sum_probs=54.3

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeec--------------CCCcCCCchhHHHHHHHhcCCCCc-EEecCCCCCcccccc
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPL--------------QEQIPIQTPQQMSERIYMYTYSER-LMGSNGLAMVFPLQE  115 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--------------pE~l~~K~k~~l~~~l~~~~~~~~-iiaSnTS~l~~p~~~  115 (269)
                      ..+++++.+++ ++++||  +|++++              +|++++|  ++++++|+++++++. |+.||.+.+  ....
T Consensus        52 ~~~I~~t~d~~-~l~dAD--iVIit~g~p~~~~~~r~e~~~~n~~i~--~~i~~~i~~~~p~~~iIv~sNP~di--~t~~  124 (300)
T cd01339          52 DTKVTGTNDYE-DIAGSD--VVVITAGIPRKPGMSRDDLLGTNAKIV--KEVAENIKKYAPNAIVIVVTNPLDV--MTYV  124 (300)
T ss_pred             CeEEEEcCCHH-HhCCCC--EEEEecCCCCCcCCCHHHHHHHHHHHH--HHHHHHHHHHCCCeEEEEecCcHHH--HHHH
Confidence            46788877865 576665  999866              7899999  999999999998888 688999876  3333


Q ss_pred             c-CCCCC-CCeEEEee
Q psy9059         116 Q-IPIQT-PHLIIGMH  129 (269)
Q Consensus       116 ~-~~~~~-p~R~i~~H  129 (269)
                      + ..... |+|++|+=
T Consensus       125 ~~~~s~~~~~rviGlg  140 (300)
T cd01339         125 AYKASGFPRNRVIGMA  140 (300)
T ss_pred             HHHHhCCCHHHEEEec
Confidence            3 33444 56887764

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN02256 arogenate dehydrogenase

Probab=96.67  E-value=0.065  Score=50.09  Aligned_cols=111  Identities=7%  Similarity=-0.009  Sum_probs=75.1

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHH-HhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeecc
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERI-YMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYF  131 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l-~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hff  131 (269)
                      +.+..+.++++.. ++|+|+-|+|-.  .=  .+++.++ ..++++++++.+-+|.=..++..+ ..+....++++.||-
T Consensus        79 v~~~~~~~e~~~~-~aDvVilavp~~--~~--~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPm  153 (304)
T PLN02256         79 VSFFRDPDDFCEE-HPDVVLLCTSIL--ST--EAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPM  153 (304)
T ss_pred             CeeeCCHHHHhhC-CCCEEEEecCHH--HH--HHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCC
Confidence            3456788887642 345999999852  33  5677777 566789999987777310133333 233334589999997


Q ss_pred             CCCCCC-------cEEE----EeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         132 SPVDKM-------QLLE----IITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       132 nP~~~~-------~lVE----iv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      .++...       +++.    +++ +.++++.++.+.++.+.+|..++.+
T Consensus       154 aG~e~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~l~~~lGa~v~~~  202 (304)
T PLN02256        154 FGPESGKGGWAGLPFVYDKVRIGD-EGEREARCERFLDIFEEEGCRMVEM  202 (304)
T ss_pred             CCCCCCccccCCCeEEEecceecC-CCCCHHHHHHHHHHHHHCCCEEEEe
Confidence            666532       2211    112 6778899999999999999999988

>PTZ00117 malate dehydrogenase; Provisional

Probab=96.64  E-value=0.0015  Score=61.34  Aligned_cols=71  Identities=20%  Similarity=0.209  Sum_probs=56.6

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeec--CCCc------------CCCchhHHHHHHHhcCCCC-cEEecCCCCCccccccc
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPL--QEQI------------PIQTPQQMSERIYMYTYSE-RLMGSNGLAMVFPLQEQ  116 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~v--pE~l------------~~K~k~~l~~~l~~~~~~~-~iiaSnTS~l~~p~~~~  116 (269)
                      .+++.+.+++ +++|||  +|++++  |++.            +++  +++..+|+++||+. .|+.||++.+  ....+
T Consensus        60 ~~i~~~~d~~-~l~~AD--iVVitag~~~~~g~~r~dll~~n~~i~--~~i~~~i~~~~p~a~vivvsNP~di--~t~~~  132 (319)
T PTZ00117         60 INILGTNNYE-DIKDSD--VVVITAGVQRKEEMTREDLLTINGKIM--KSVAESVKKYCPNAFVICVTNPLDC--MVKVF  132 (319)
T ss_pred             eEEEeCCCHH-HhCCCC--EEEECCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHCCCeEEEEecChHHH--HHHHH
Confidence            5677777887 887766  999999  8887            778  99999999999888 8889999876  33333


Q ss_pred             -CCCCCC-CeEEEee
Q psy9059         117 -IPIQTP-HLIIGMH  129 (269)
Q Consensus       117 -~~~~~p-~R~i~~H  129 (269)
                       .....| .|++|++
T Consensus       133 ~~~s~~p~~rviG~g  147 (319)
T PTZ00117        133 QEKSGIPSNKICGMA  147 (319)
T ss_pred             HHhhCCCcccEEEec
Confidence             445566 8999988

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.28  E-value=0.083  Score=48.25  Aligned_cols=159  Identities=14%  Similarity=0.054  Sum_probs=99.1

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hffn  132 (269)
                      .+.+.+..|++..+|  +|+=||+-.  .=  .+++.+|...+.++.+|-|-.++.  +++.+ ....+..+++..||-.
T Consensus        53 ~~~~~~~~e~~~~aD--vVilav~p~--~~--~~vl~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~~~~~v~r~mPn~  124 (279)
T PRK07679         53 VKGTHNKKELLTDAN--ILFLAMKPK--DV--AEALIPFKEYIHNNQLIISLLAGV--STHSIRNLLQKDVPIIRAMPNT  124 (279)
T ss_pred             ceEeCCHHHHHhcCC--EEEEEeCHH--HH--HHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCCeEEEECCCH
Confidence            456678888887665  999999752  22  455677777778888888866766  34433 2333445799999844


Q ss_pred             CCC-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch--hHH-----HHHHHHHHHHH--HHHHcCCCHHHH
Q psy9059         133 PVD-KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF--YTT-----RILSTMLSEAM--RILQEGTSPKDL  202 (269)
Q Consensus       133 P~~-~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf--I~n-----Rll~al~~EA~--~lv~eGis~edI  202 (269)
                      |.. ...+.=+++++..+++..+.+..++..+|+ ++.++|..=+  .+.     .. ...+-|++  ..+..|++.++.
T Consensus       125 ~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a  202 (279)
T PRK07679        125 SAAILKSATAISPSKHATAEHIQTAKALFETIGL-VSVVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVA  202 (279)
T ss_pred             HHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCc-EEEeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHH
Confidence            432 234555568888889999999999999998 4444321100  110     11 23333333  356788888777


Q ss_pred             HHHHH-h-cCC-------CchhhHHHHhh
Q psy9059         203 DRLTK-Q-FGF-------PVGAATLSDEV  222 (269)
Q Consensus       203 D~a~~-g-~G~-------p~GPf~~~D~~  222 (269)
                      -.++. . .|.       -..|-.+.|.+
T Consensus       203 ~~~~~~~~~gsa~~~~~~~~~~~~l~~~v  231 (279)
T PRK07679        203 KSLILQTMIGAAEMLKASEKHPSILRKEI  231 (279)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHhc
Confidence            76653 1 222       13676666766

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.05  E-value=0.3  Score=45.48  Aligned_cols=112  Identities=11%  Similarity=0.034  Sum_probs=66.5

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeE-EEee
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLI-IGMH  129 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~-i~~H  129 (269)
                      ++++++.+. +++.++|  +|+.+++-  ..+  .+++++|.++++++++|.+.++++. ....+. .... .++ .+.+
T Consensus        60 ~~~~~~~~~-~~~~~~D--~vil~vk~--~~~--~~~~~~l~~~~~~~~iii~~~nG~~-~~~~l~~~~~~-~~~~~g~~  130 (341)
T PRK08229         60 SAIAFSTDP-AALATAD--LVLVTVKS--AAT--ADAAAALAGHARPGAVVVSFQNGVR-NADVLRAALPG-ATVLAGMV  130 (341)
T ss_pred             ceeEeccCh-hhccCCC--EEEEEecC--cch--HHHHHHHHhhCCCCCEEEEeCCCCC-cHHHHHHhCCC-CcEEEEEE
Confidence            356667776 5665555  99999975  456  8899999999999999988888872 222232 2222 343 3334


Q ss_pred             cc-----CCCCC--CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc
Q psy9059         130 YF-----SPVDK--MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG  175 (269)
Q Consensus       130 ff-----nP~~~--~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG  175 (269)
                      ++     .|-..  ...-++.-+.  . +..+++.++++..|.......|.-+
T Consensus       131 ~~~~~~~~pg~~~~~~~g~l~~~~--~-~~~~~~~~~l~~~g~~~~~~~di~~  180 (341)
T PRK08229        131 PFNVISRGPGAFHQGTSGALAIEA--S-PALRPFAAAFARAGLPLVTHEDMRA  180 (341)
T ss_pred             EEEEEecCCceEEecCCCceEecC--C-chHHHHHHHHHhcCCCceecchhHH
Confidence            32     22110  0001111111  2 3457788888888877776676543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.02  E-value=0.058  Score=52.09  Aligned_cols=143  Identities=8%  Similarity=0.090  Sum_probs=77.8

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCch-------hHHHHHHHhcCCCCcEE-ecCCCCCcccccc-c-CCCC
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTP-------QQMSERIYMYTYSERLM-GSNGLAMVFPLQE-Q-IPIQ  120 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k-------~~l~~~l~~~~~~~~ii-aSnTS~l~~p~~~-~-~~~~  120 (269)
                      .++++++.+.++++.++|  +|++|||+.++.|.+       .++.+.|.+. +++.++ -.||..-  -.++ + ....
T Consensus        58 ~~~l~~t~~~~~~~~~ad--~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~p--gtt~~l~~~~~  132 (388)
T PRK15057         58 KIHFNATLDKNEAYRDAD--YVIIATPTDYDPKTNYFNTSSVESVIKDVVEI-NPYAVMVIKSTVPV--GFTAAMHKKYR  132 (388)
T ss_pred             CCcEEEecchhhhhcCCC--EEEEeCCCCCccCCCCcChHHHHHHHHHHHhc-CCCCEEEEeeecCC--chHHHHHHHhh
Confidence            466777777899987766  999999999988711       2445667664 544444 4444322  1222 2 1111


Q ss_pred             ------CCCeE----EEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHh--CCc-EEEEEecc-----CchhHHHH-
Q psy9059         121 ------TPHLI----IGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLK--QGK-VVITVKDG-----PGFYTTRI-  181 (269)
Q Consensus       121 ------~p~R~----i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~--lGk-~pv~vkd~-----pGfI~nRl-  181 (269)
                            .|+|.    ..-.++||+.      ||-|.  +++..+++.+++..  ++. .|+++.+.     --++.|-+ 
T Consensus       133 ~~~v~~~PE~l~~G~a~~d~~~p~r------vv~G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~  204 (388)
T PRK15057        133 TENIIFSPEFLREGKALYDNLHPSR------IVIGE--RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYL  204 (388)
T ss_pred             cCcEEECcccccCCcccccccCCCE------EEEEc--CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHH
Confidence                  22222    1112233333      33332  23455667766644  443 34334221     11233333 


Q ss_pred             --HHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059         182 --LSTMLSEAMRILQ-EGTSPKDLDRLT  206 (269)
Q Consensus       182 --l~al~~EA~~lv~-eGis~edID~a~  206 (269)
                        ..+++||+..+.+ .|+++.++=.++
T Consensus       205 a~~Ia~~NE~a~lae~~GiD~~eV~~a~  232 (388)
T PRK15057        205 AMRVAYFNELDSYAESLGLNTRQIIEGV  232 (388)
T ss_pred             HHHHHHHHHHHHHHHHhCcCHHHHHHHh
Confidence              3577899988876 688887777666

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.96  E-value=0.044  Score=50.75  Aligned_cols=115  Identities=7%  Similarity=0.017  Sum_probs=80.4

Q ss_pred             HHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCC--eEEEeeccCCC----
Q psy9059          61 SERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPH--LIIGMHYFSPV----  134 (269)
Q Consensus        61 ~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~--R~i~~HffnP~----  134 (269)
                      .+++.+  ||+|+=|||=.  .-  -++.+++..+.++++|+.=-||.=+-++.... ...|+  +|++.||..-+    
T Consensus        59 ~~~~~~--aD~VivavPi~--~~--~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~-~~~~~~~~~vg~HPM~G~~~~~  131 (279)
T COG0287          59 AEAAAE--ADLVIVAVPIE--AT--EEVLKELAPHLKKGAIVTDVGSVKSSVVEAME-KYLPGDVRFVGGHPMFGPEADA  131 (279)
T ss_pred             hhhccc--CCEEEEeccHH--HH--HHHHHHhcccCCCCCEEEecccccHHHHHHHH-HhccCCCeeEecCCCCCCcccc
Confidence            555544  45999999863  33  56888888888999999988886422333322 22223  89999995444    


Q ss_pred             --CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHH
Q psy9059         135 --DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRIL  182 (269)
Q Consensus       135 --~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll  182 (269)
                        .....+=+++++.++.+.++.+.++++.+|..++.+ .+..-.+.-.++
T Consensus       132 ~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vs  182 (279)
T COG0287         132 GLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVS  182 (279)
T ss_pred             cccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHH
Confidence              123456678899999999999999999999999988 443334444443

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=95.86  E-value=0.049  Score=49.97  Aligned_cols=143  Identities=18%  Similarity=0.151  Sum_probs=90.5

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH---HHHHhcCCCCcEEecCCCCCccccc-c-c-CCC-CCCCeEE
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS---ERIYMYTYSERLMGSNGLAMVFPLQ-E-Q-IPI-QTPHLII  126 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~---~~l~~~~~~~~iiaSnTS~l~~p~~-~-~-~~~-~~p~R~i  126 (269)
                      ...+.|.+|++.++|  +|+=|+|-.-.++   +++   ..+.+..+++.++...| +.+ |.+ . + +.+ .+.-+++
T Consensus        40 ~~~~~s~~~~~~~ad--vVil~vp~~~~~~---~v~~g~~~l~~~~~~g~~vid~s-t~~-p~~~~~~~~~~~~~g~~~v  112 (288)
T TIGR01692        40 AQAAASPAEAAEGAD--RVITMLPAGQHVI---SVYSGDEGILPKVAKGSLLIDCS-TID-PDSARKLAELAAAHGAVFM  112 (288)
T ss_pred             CeecCCHHHHHhcCC--EEEEeCCChHHHH---HHHcCcchHhhcCCCCCEEEECC-CCC-HHHHHHHHHHHHHcCCcEE
Confidence            456778999998776  9999999755554   344   56766677776655333 442 322 1 2 111 1222332


Q ss_pred             EeeccCCCC-------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec-cCch---hHHHHHHH----HHHHHHH
Q psy9059         127 GMHYFSPVD-------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD-GPGF---YTTRILST----MLSEAMR  191 (269)
Q Consensus       127 ~~HffnP~~-------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd-~pGf---I~nRll~a----l~~EA~~  191 (269)
                      -.    |+.       .-.+.-++.|   +++.++++..++..+|+..+.+.+ ..|.   ++|.++.+    .++||+.
T Consensus       113 da----Pv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~  185 (288)
T TIGR01692       113 DA----PVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMA  185 (288)
T ss_pred             EC----CCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22    322       1234444554   568899999999999999988854 3444   44554433    5789998


Q ss_pred             HHH-cCCCHHHHHHHHH-hcC
Q psy9059         192 ILQ-EGTSPKDLDRLTK-QFG  210 (269)
Q Consensus       192 lv~-eGis~edID~a~~-g~G  210 (269)
                      +.+ .|++++++-.++. +.|
T Consensus       186 la~~~Gld~~~~~~~~~~~~~  206 (288)
T TIGR01692       186 LGEKLGLDPKVLFEIANTSSG  206 (288)
T ss_pred             HHHHcCCCHHHHHHHHhcCCc
Confidence            875 6889999988886 655

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=95.84  E-value=0.027  Score=51.09  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=72.3

Q ss_pred             HHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccCCC-----
Q psy9059          61 SERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFSPV-----  134 (269)
Q Consensus        61 ~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~HffnP~-----  134 (269)
                      .+++.++|  +|+=|+|-+-  =  .+++.++.++.++++++.--+|.=.-+...+. ......+|++.||..-+     
T Consensus        40 ~~~~~~~D--lvvlavP~~~--~--~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~  113 (258)
T PF02153_consen   40 IEAVEDAD--LVVLAVPVSA--I--EDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGP  113 (258)
T ss_dssp             HHHGGCCS--EEEE-S-HHH--H--HHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSG
T ss_pred             HhHhcCCC--EEEEcCCHHH--H--HHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccc
Confidence            67887766  9999998744  4  67999999999999999977775311232232 23346799999995444     


Q ss_pred             -----C--CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         135 -----D--KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       135 -----~--~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                           .  .-..+=|++++.|+++.++.+.+|++.+|..++.+
T Consensus       114 ~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~  156 (258)
T PF02153_consen  114 EAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM  156 (258)
T ss_dssp             GG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred             hhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence                 2  23567788999999999999999999999999987

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.58  E-value=0.2  Score=47.57  Aligned_cols=135  Identities=13%  Similarity=0.091  Sum_probs=87.9

Q ss_pred             CHHHHhcCCCCceEEeecCCCcCCCchhHHH-HHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccCCCCC
Q psy9059          59 TYSERLMGSNGLAMVFPLQEQIPIQTPQQMS-ERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFSPVDK  136 (269)
Q Consensus        59 ~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~-~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~HffnP~~~  136 (269)
                      |.+|+++.+|  +|+=++|..  .-  .+++ ++|.++++++++| |-.+++  ++.... .....-+++-+.|=.|.+.
T Consensus        66 s~~eaa~~AD--VVvLaVPd~--~~--~~V~~~~I~~~Lk~g~iL-~~a~G~--~i~~~~~~p~~~~~Vi~vaPn~Pg~~  136 (330)
T PRK05479         66 TVAEAAKWAD--VIMILLPDE--VQ--AEVYEEEIEPNLKEGAAL-AFAHGF--NIHFGQIVPPADVDVIMVAPKGPGHL  136 (330)
T ss_pred             CHHHHHhcCC--EEEEcCCHH--HH--HHHHHHHHHhcCCCCCEE-EECCCC--ChhhceeccCCCCcEEEeCCCCCchh
Confidence            8999998877  999999953  33  6777 8899999999999 888888  455432 2222345666667666652


Q ss_pred             CcEE--------EEe-CCCCCCHHHHHHHHHHHHhCCcEEE-----EEeccC-------chhHHHHHHHHHHHHHHH-HH
Q psy9059         137 MQLL--------EII-TTEQTSQDTAASAVAVGLKQGKVVI-----TVKDGP-------GFYTTRILSTMLSEAMRI-LQ  194 (269)
Q Consensus       137 ~~lV--------Eiv-~~~~Ts~e~~~~~~~~~~~lGk~pv-----~vkd~p-------GfI~nRll~al~~EA~~l-v~  194 (269)
                      ++=.        =++ .....+.+..+.+.+++..+|..+.     ..++..       .-++.--+..++..++.. ++
T Consensus       137 vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~e  216 (330)
T PRK05479        137 VRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVE  216 (330)
T ss_pred             hhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHH
Confidence            2111        022 2344557889999999999999876     332211       123333345677777754 46


Q ss_pred             cCCCHHHH
Q psy9059         195 EGTSPKDL  202 (269)
Q Consensus       195 eGis~edI  202 (269)
                      .|++|+..
T Consensus       217 aG~~pe~A  224 (330)
T PRK05479        217 AGYQPEMA  224 (330)
T ss_pred             cCCCHHHH
Confidence            78777654

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.50  E-value=0.09  Score=50.76  Aligned_cols=149  Identities=9%  Similarity=0.042  Sum_probs=91.4

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcC------CCchhHHHHHHHhcCCCCcEEecCCCCCccccc-cc-CCC-CC
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIP------IQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ-EQ-IPI-QT  121 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~------~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~-~~-~~~-~~  121 (269)
                      .|++++++++++++.++|  +|+-|||...+      ++.=.+..+.|.+++++++++.. +|+.+...+ ++ ... .+
T Consensus        61 ~g~l~~~~~~~~~~~~ad--vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~-~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        61 AGRLRATTDYEDAIRDAD--VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVL-ESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             cCCeEEECCHHHHHhhCC--EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEE-eCcCCCCchHHHHHHHHHh
Confidence            367999999999997766  99999987543      22225666788888888776653 344421111 12 111 11


Q ss_pred             -------CCeEEEeeccCCCCCCcEE---------EEeCCCCCCHHHHHHHHHHHHhCC-cEEEEEeccC-----chhHH
Q psy9059         122 -------PHLIIGMHYFSPVDKMQLL---------EIITTEQTSQDTAASAVAVGLKQG-KVVITVKDGP-----GFYTT  179 (269)
Q Consensus       122 -------p~R~i~~HffnP~~~~~lV---------Eiv~~~~Ts~e~~~~~~~~~~~lG-k~pv~vkd~p-----GfI~n  179 (269)
                             .+-.++.   +|....+--         =++-|  .+++..+++..++..++ +.++.+.+.-     ..+.|
T Consensus       138 ~~g~~~~~d~~v~~---~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N  212 (411)
T TIGR03026       138 ASGLKLGEDFYLAY---NPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAEN  212 (411)
T ss_pred             hcCCCCCCCceEEE---CCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHH
Confidence                   1112233   343322211         24555  58899999999999997 5676664321     12333


Q ss_pred             HH---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy9059         180 RI---LSTMLSEAMRILQ-EGTSPKDLDRLTK  207 (269)
Q Consensus       180 Rl---l~al~~EA~~lv~-eGis~edID~a~~  207 (269)
                      -+   ..+++||+..+.+ .|++++++=.++.
T Consensus       213 ~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~  244 (411)
T TIGR03026       213 TFRAVKIAFANELARICEALGIDVYEVIEAAG  244 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhC
Confidence            32   2678899998876 6888888877764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=95.46  E-value=0.19  Score=46.25  Aligned_cols=143  Identities=13%  Similarity=0.040  Sum_probs=90.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc----c-cC-CCCCCCeE
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ----E-QI-PIQTPHLI  125 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~----~-~~-~~~~p~R~  125 (269)
                      .+++++++.++++.++|  +|+.|+|.  ...  .+++.+|.+++++++++.+.++|+.....    + +. ......++
T Consensus        57 ~~~~~~~~~~~~~~~~D--~vi~~v~~--~~~--~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~  130 (325)
T PRK00094         57 DNLRATTDLAEALADAD--LILVAVPS--QAL--REVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI  130 (325)
T ss_pred             CCeEEeCCHHHHHhCCC--EEEEeCCH--HHH--HHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce
Confidence            35778889999987766  99999998  345  88999999999999988877766631111    1 11 11110121


Q ss_pred             EEeeccCCCC-------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchh---------------------
Q psy9059         126 IGMHYFSPVD-------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFY---------------------  177 (269)
Q Consensus       126 i~~HffnP~~-------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI---------------------  177 (269)
                      ..  ...|..       ...++.+..   .+.+.++++..+++..|..+....|..|..                     
T Consensus       131 ~~--~~~P~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~  205 (325)
T PRK00094        131 AV--LSGPSFAKEVARGLPTAVVIAS---TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGL  205 (325)
T ss_pred             EE--EECccHHHHHHcCCCcEEEEEe---CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCC
Confidence            11  122332       123344432   367889999999999998776655544421                     


Q ss_pred             -HHH---HHHHHHHHHHHHHH-cCCCHHHHHHH
Q psy9059         178 -TTR---ILSTMLSEAMRILQ-EGTSPKDLDRL  205 (269)
Q Consensus       178 -~nR---ll~al~~EA~~lv~-eGis~edID~a  205 (269)
                       .|.   +....++|++.+.+ .|++++.+-..
T Consensus       206 ~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~  238 (325)
T PRK00094        206 GDNARAALITRGLAEITRLGVALGANPETFLGL  238 (325)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCChhhhhcc
Confidence             122   45667788888865 68877766543

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.87  E-value=0.31  Score=43.13  Aligned_cols=137  Identities=6%  Similarity=0.113  Sum_probs=88.1

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn  132 (269)
                      .....+..+++.++|  +|+-++|-.  .=  +++.+++..+.+ +.+|-|-+.++  +++.+. ......+++-+||-.
T Consensus        54 ~~~~~~~~~~~~~~D--iViiavp~~--~~--~~v~~~l~~~~~-~~~vis~~~gi--~~~~l~~~~~~~~~v~r~~Pn~  124 (245)
T PRK07634         54 VSTTTDWKQHVTSVD--TIVLAMPPS--AH--EELLAELSPLLS-NQLVVTVAAGI--GPSYLEERLPKGTPVAWIMPNT  124 (245)
T ss_pred             cEEeCChHHHHhcCC--EEEEecCHH--HH--HHHHHHHHhhcc-CCEEEEECCCC--CHHHHHHHcCCCCeEEEECCcH
Confidence            345578889987666  999999863  33  567777877666 45777777777  555553 344445777788844


Q ss_pred             CCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec------------cCchhHHHHHHHHHHHHHHHHHcCC
Q psy9059         133 PVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD------------GPGFYTTRILSTMLSEAMRILQEGT  197 (269)
Q Consensus       133 P~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd------------~pGfI~nRll~al~~EA~~lv~eGi  197 (269)
                      |..   -++.+  ..+...+++..+.+.+++..+|..+. +.+            .|+|+ ..++.++..   +.++.|+
T Consensus       125 a~~v~~g~~~~--~~~~~~~~~~~~~v~~lf~~~G~~~~-~~e~~~~~~~a~~gs~pa~~-~~~~~a~~~---~~~~~Gl  197 (245)
T PRK07634        125 AAEIGKSISLY--TMGQSVNETHKETLQLILKGIGTSQL-CTEEEVHQLTAVTGSAPAFL-YYFAESLIE---ATKSYGV  197 (245)
T ss_pred             HHHHhcCCeEE--eeCCCCCHHHHHHHHHHHHhCCCEEE-ECHHHcchHHhhhcchHHHH-HHHHHHHHH---HHHHcCC
Confidence            432   22333  23456788999999999999999986 432            23332 233333332   2456788


Q ss_pred             CHHHHHHHH
Q psy9059         198 SPKDLDRLT  206 (269)
Q Consensus       198 s~edID~a~  206 (269)
                      +.++--+++
T Consensus       198 ~~~~a~~~~  206 (245)
T PRK07634        198 DEETAKHLV  206 (245)
T ss_pred             CHHHHHHHH
Confidence            777766654

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.77  E-value=0.012  Score=54.35  Aligned_cols=54  Identities=24%  Similarity=0.292  Sum_probs=43.4

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeec--------------CCCcCCCchhHHHHHHHhcCCCC-cEEecCCCCC
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPL--------------QEQIPIQTPQQMSERIYMYTYSE-RLMGSNGLAM  109 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--------------pE~l~~K~k~~l~~~l~~~~~~~-~iiaSnTS~l  109 (269)
                      .++++++.++ +++.+||  +|+.++              .++++++  ++++++|.+++++. .|+.||.+..
T Consensus        56 ~~~i~~~~d~-~~~~~aD--iVii~~~~p~~~~~~r~~~~~~n~~i~--~~i~~~i~~~~~~~~viv~tNP~d~  124 (307)
T PRK06223         56 DTKITGTNDY-EDIAGSD--VVVITAGVPRKPGMSRDDLLGINAKIM--KDVAEGIKKYAPDAIVIVVTNPVDA  124 (307)
T ss_pred             CcEEEeCCCH-HHHCCCC--EEEECCCCCCCcCCCHHHHHHHHHHHH--HHHHHHHHHHCCCeEEEEecCcHHH
Confidence            4678888888 4676665  999886              4777888  99999999999876 7788888765

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=94.36  E-value=3.3  Score=38.77  Aligned_cols=129  Identities=10%  Similarity=0.047  Sum_probs=83.3

Q ss_pred             hcccccCCCCCCCcCeEE----------ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCC
Q psy9059          39 ALCTTVPLVSTSHTGITY----------LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLA  108 (269)
Q Consensus        39 ~~~~~~~~~~~~~~~l~~----------~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~  108 (269)
                      ...-++|-|+  +|-|.|          ++|-.||++++|  +++==-|.- ...  -++.+++..++++++||+.. -+
T Consensus       106 ~~a~~~pkpp--k~~ihf~~pEdaGvkVtsDD~EAvk~ae--i~I~ftPfG-~~t--~~Iikki~~~ipEgAII~~t-CT  177 (342)
T PRK00961        106 AKAKELPKPP--KGCIHFVHPEDLGLKVTTDDREAVADAD--IVITWLPKG-GMQ--PDIIEKFADDIKEGAIVTHA-CT  177 (342)
T ss_pred             HHHhhCCCCC--ccceeecCHHHcCceEecCcHHHhcCCC--EEEEecCCC-CCc--hHHHHHHHhhCCCCCEEecc-cc
Confidence            3445567777  665555          588899998877  888887763 223  57999999999999999843 33


Q ss_pred             Ccccccc--c-CCCCCCC-eEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchh
Q psy9059         109 MVFPLQE--Q-IPIQTPH-LIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFY  177 (269)
Q Consensus       109 l~~p~~~--~-~~~~~p~-R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI  177 (269)
                      .+ |...  + +.++|.+ .+..+||-.=|. ++=--.+.-.-.++|.+++..+++++.|+.++.+ .|.-+-|
T Consensus       178 Ip-t~~ly~~le~l~R~DvgIsS~HPaaVPg-t~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~PA~lvspV  249 (342)
T PRK00961        178 IP-TTKFAKIFKDLGRDDLNVTSYHPGAVPE-MKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKMPANLIGPV  249 (342)
T ss_pred             CC-HHHHHHHHHHhCcccCCeeccCCCCCCC-CCCceecccccCCHHHHHHHHHHHHHhCCCeeecchhhcchh
Confidence            32 2222  1 4555433 566667653222 2211111223457899999999999999999988 5444433

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=94.18  E-value=5  Score=37.65  Aligned_cols=127  Identities=9%  Similarity=0.034  Sum_probs=83.8

Q ss_pred             hcccccCCCCCCCcCeEE----------ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCC
Q psy9059          39 ALCTTVPLVSTSHTGITY----------LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLA  108 (269)
Q Consensus        39 ~~~~~~~~~~~~~~~l~~----------~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~  108 (269)
                      ...-++|-|+  +|-|.|          ++|-.||++++|  +++==-|.- ...  -++.+++-.+.|+++||+.. -+
T Consensus       104 ~~a~~~pkpp--k~~ihf~~pEdaGvkVtsDD~EAv~~ae--i~I~ftPfG-~~q--~~Iikkii~~lpEgAII~~t-CT  175 (340)
T TIGR01723       104 AKAKELPKPP--KGAIHFVHPEDLGLKVTTDDREAVEDAD--IIITWLPKG-NKQ--PDIIKKFIDDIPEGAIVTHA-CT  175 (340)
T ss_pred             HHHhhCCCCC--cceeeecCHHHcCceEecCcHHHhcCCC--EEEEEcCCC-CCc--hHHHHHHHhhCCCCCEEecc-cc
Confidence            3445567777  565555          588899998877  888888863 223  57999999999999999843 33


Q ss_pred             Ccccccc---cCCCCCCC-eEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCc
Q psy9059         109 MVFPLQE---QIPIQTPH-LIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPG  175 (269)
Q Consensus       109 l~~p~~~---~~~~~~p~-R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pG  175 (269)
                      .+ |...   .+.++|.+ .+..+||-.=|..=.=+=|+.+ -.++|.+++..+++++.|+.|..+ .+.-+
T Consensus       176 Ip-t~~ly~ilE~l~R~DvgVsS~HPaaVPgt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~PA~Lvs  245 (340)
T TIGR01723       176 IP-TTKFAKIFEDLGREDLNVTSYHPGCVPEMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKMPANLLG  245 (340)
T ss_pred             CC-hHHHHHHHHhhCcccCCeeccCCCCCCCCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeecchhhcc
Confidence            32 3322   24555432 4666676532322123334444 457788999999999999999988 44333

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.13  E-value=0.83  Score=41.89  Aligned_cols=140  Identities=10%  Similarity=0.112  Sum_probs=93.5

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn  132 (269)
                      .+.+++..|.+.++|  +|+=|++-  ..=  .+++++|..+.+++.++-|=-.+.  +++.+. .+..+.+++-+=|--
T Consensus        51 ~~~~~~~~e~~~~aD--iIiLavkP--~~~--~~vl~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~~~~~vvR~MPN~  122 (272)
T PRK12491         51 ITITTNNNEVANSAD--ILILSIKP--DLY--SSVINQIKDQIKNDVIVVTIAAGK--SIKSTENEFDRKLKVIRVMPNT  122 (272)
T ss_pred             cEEeCCcHHHHhhCC--EEEEEeCh--HHH--HHHHHHHHHhhcCCcEEEEeCCCC--cHHHHHHhcCCCCcEEEECCCh
Confidence            355678888887666  99999983  334  678888888888999999999887  666653 344445666655544


Q ss_pred             CCCCCcE-EEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec------------cCchhHHHHHHHHHHHHHHHHHcCCCH
Q psy9059         133 PVDKMQL-LEIITTEQTSQDTAASAVAVGLKQGKVVITVKD------------GPGFYTTRILSTMLSEAMRILQEGTSP  199 (269)
Q Consensus       133 P~~~~~l-VEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd------------~pGfI~nRll~al~~EA~~lv~eGis~  199 (269)
                      |...-.- .=+..++..+++..+.+.+++..+|+. +.+.|            .|+|+ -.++.++..   +.++.|++.
T Consensus       123 ~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~~~E~~~d~~talsgsgPAf~-~~~~eal~~---a~v~~Gl~~  197 (272)
T PRK12491        123 PVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQT-EVVNEKLMDVVTSISGSSPAYV-YMFIEAMAD---AAVLGGMPR  197 (272)
T ss_pred             HHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCE-EEEcHHHhhhHHHhccCcHHHH-HHHHHHHHH---HHHHcCCCH
Confidence            4432222 223477788898999999999999997 44543            45654 233333333   334568877


Q ss_pred             HHHHHHH
Q psy9059         200 KDLDRLT  206 (269)
Q Consensus       200 edID~a~  206 (269)
                      ++-.+..
T Consensus       198 ~~A~~l~  204 (272)
T PRK12491        198 KQAYKFA  204 (272)
T ss_pred             HHHHHHH
Confidence            7666654

>PRK07680 late competence protein ComER; Validated

Probab=94.09  E-value=0.54  Score=42.66  Aligned_cols=139  Identities=12%  Similarity=0.126  Sum_probs=84.3

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccC
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFS  132 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~Hffn  132 (269)
                      +++...+..+++.++|  +|+-+++-.  .=  .+++++|..+.+++.+|.|-+++.  +++.+...- +.+++-++|-.
T Consensus        49 g~~~~~~~~~~~~~aD--iVilav~p~--~~--~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~-~~~~~r~~p~~  119 (273)
T PRK07680         49 GIHVAKTIEEVISQSD--LIFICVKPL--DI--YPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLV-PCQVARIIPSI  119 (273)
T ss_pred             CeEEECCHHHHHHhCC--EEEEecCHH--HH--HHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHc-CCCEEEECCCh
Confidence            4566778888887766  999999632  12  467777877787888888888876  454443211 23444445422


Q ss_pred             CCCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec------------cCchhHHHHHHHHHHHHHHHHH-cCCC
Q psy9059         133 PVDK-MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD------------GPGFYTTRILSTMLSEAMRILQ-EGTS  198 (269)
Q Consensus       133 P~~~-~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd------------~pGfI~nRll~al~~EA~~lv~-eGis  198 (269)
                      |... .-..=++.++..+++..+.+.+++..+|. ++.+.+            .|+|+. .++.+++..+   ++ .|++
T Consensus       120 ~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e~~~~~~~~l~gs~pa~~~-~~~~al~~~~---~~~~Gl~  194 (273)
T PRK07680        120 TNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEEDITRVSSDIVSCGPAFFS-YLLQRFIDAA---VEETNIS  194 (273)
T ss_pred             HHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEEChHhcchhhhhccchHHHHH-HHHHHHHHHH---HHhcCCC
Confidence            2110 01111234666788888999999999995 555532            233443 3445555554   34 6887


Q ss_pred             HHHHHHH
Q psy9059         199 PKDLDRL  205 (269)
Q Consensus       199 ~edID~a  205 (269)
                      .++.-++
T Consensus       195 ~~~a~~~  201 (273)
T PRK07680        195 KEEATTL  201 (273)
T ss_pred             HHHHHHH
Confidence            7665544

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=93.58  E-value=1.7  Score=38.97  Aligned_cols=141  Identities=12%  Similarity=0.145  Sum_probs=91.4

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn  132 (269)
                      .+..++..+.+..+|  +|+=||+ .-++   .+++.++.....++.+|.|-+.++  +++.+. .+....+++-+=|-.
T Consensus        31 ~~~~~~~~e~~~~aD--iIiLaVk-P~~i---~~vl~~l~~~~~~~~~ivS~~agi--~~~~l~~~~~~~~~ivR~mPn~  102 (245)
T TIGR00112        31 IVASSDAQEAVKEAD--VVFLAVK-PQDL---EEVLSELKSEKGKDKLLISIAAGV--TLEKLSQLLGGTRRVVRVMPNT  102 (245)
T ss_pred             cEEeCChHHHHhhCC--EEEEEeC-HHHH---HHHHHHHhhhccCCCEEEEecCCC--CHHHHHHHcCCCCeEEEECCCh
Confidence            455678888887666  9999998 3333   467777777667788999999988  676753 343333555444433


Q ss_pred             CCCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-e----------ccCchhHHHHHHHHHHHHHHHHHcCCCHH
Q psy9059         133 PVDK-MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-K----------DGPGFYTTRILSTMLSEAMRILQEGTSPK  200 (269)
Q Consensus       133 P~~~-~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-k----------d~pGfI~nRll~al~~EA~~lv~eGis~e  200 (269)
                      |... .-..=+..++..+++..+.+.+++..+|+...+- +          ..|+|+ -.++.++..   +.++.|++++
T Consensus       103 ~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~-~~~~~al~~---~~v~~Gl~~~  178 (245)
T TIGR00112       103 PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYV-FLFIEALAD---AGVKQGLPRE  178 (245)
T ss_pred             HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHH-HHHHHHHHH---HHHHcCCCHH
Confidence            3222 1234456788889999999999999999766432 1          134543 223333333   4566799888


Q ss_pred             HHHHHH
Q psy9059         201 DLDRLT  206 (269)
Q Consensus       201 dID~a~  206 (269)
                      +-.+..
T Consensus       179 ~A~~lv  184 (245)
T TIGR00112       179 LALELA  184 (245)
T ss_pred             HHHHHH
Confidence            887765

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.34  E-value=0.2  Score=46.63  Aligned_cols=146  Identities=16%  Similarity=0.216  Sum_probs=96.6

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCCcEEecCCCCCcccccc--c-CCCCCCCeEEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPIQTPHLIIG  127 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~~~p~R~i~  127 (269)
                      +.+...|..|++.++|  .|+=++|..-+++  .=+|  ..+.+.+++.+++--.|+.-  |.+-  + +.+.-    -|
T Consensus        44 Ga~~a~s~~eaa~~aD--vVitmv~~~~~V~--~V~~g~~g~~~~~~~G~i~IDmSTis--p~~a~~~a~~~~~----~G  113 (286)
T COG2084          44 GATVAASPAEAAAEAD--VVITMLPDDAAVR--AVLFGENGLLEGLKPGAIVIDMSTIS--PETARELAAALAA----KG  113 (286)
T ss_pred             CCcccCCHHHHHHhCC--EEEEecCCHHHHH--HHHhCccchhhcCCCCCEEEECCCCC--HHHHHHHHHHHHh----cC
Confidence            4577788899998877  9999999988887  6666  46666677777766544432  3222  2 11111    24


Q ss_pred             eecc-CCCCC------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe-ccCch---hHHHHHH----HHHHHHHHH
Q psy9059         128 MHYF-SPVDK------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK-DGPGF---YTTRILS----TMLSEAMRI  192 (269)
Q Consensus       128 ~Hff-nP~~~------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk-d~pGf---I~nRll~----al~~EA~~l  192 (269)
                      .+|. -|+.-      .--+=|+-|  -+++.+++++.+++.+|+..+++. ...|.   ++|.++.    +.+.||+.+
T Consensus       114 ~~~lDAPVsGg~~~A~~GtLtimvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~l  191 (286)
T COG2084         114 LEFLDAPVSGGVPGAAAGTLTIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALAL  191 (286)
T ss_pred             CcEEecCccCCchhhhhCceEEEeC--CCHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4554 23321      112223333  378999999999999999999994 43443   5666654    455788888


Q ss_pred             HH-cCCCHHHHHHHHH-hcC
Q psy9059         193 LQ-EGTSPKDLDRLTK-QFG  210 (269)
Q Consensus       193 v~-eGis~edID~a~~-g~G  210 (269)
                      .+ .|++++-+..++. +.+
T Consensus       192 a~k~Gld~~~~~~vi~~~~~  211 (286)
T COG2084         192 AEKAGLDPDVVLEVISGGAA  211 (286)
T ss_pred             HHHcCCCHHHHHHHHhcccc
Confidence            76 6889999999997 544

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.08  E-value=0.52  Score=43.53  Aligned_cols=145  Identities=12%  Similarity=0.065  Sum_probs=84.7

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCCCCcEEecCCCCCcccccc--c-CCC-CCCCeEEE
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTYSERLMGSNGLAMVFPLQE--Q-IPI-QTPHLIIG  127 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~-~~p~R~i~  127 (269)
                      .+.+.|..|++.++|  +|+.|+|.+..++  .-++.  .+-..+++++++ .++|+.+ |.+.  + ..+ .+.-+++-
T Consensus        45 ~~~~~s~~~~~~~aD--vVi~~vp~~~~~~--~vl~~~~~i~~~l~~g~lv-id~sT~~-p~~~~~l~~~l~~~g~~~ld  118 (296)
T PRK15461         45 ATPAASPAQAAAGAE--FVITMLPNGDLVR--SVLFGENGVCEGLSRDALV-IDMSTIH-PLQTDKLIADMQAKGFSMMD  118 (296)
T ss_pred             CcccCCHHHHHhcCC--EEEEecCCHHHHH--HHHcCcccHhhcCCCCCEE-EECCCCC-HHHHHHHHHHHHHcCCcEEE
Confidence            456779999997766  9999999987666  55542  355566777766 4444442 3221  2 111 22223332


Q ss_pred             eeccC-CC--CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-Cc---hhHHH----HHHHHHHHHHHHHH-c
Q psy9059         128 MHYFS-PV--DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-PG---FYTTR----ILSTMLSEAMRILQ-E  195 (269)
Q Consensus       128 ~Hffn-P~--~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-pG---fI~nR----ll~al~~EA~~lv~-e  195 (269)
                      .--.. |.  ..-.++=++.|   ++++++++..+++.+|+..+++.+. .|   -++|-    ....++.||+.+.+ .
T Consensus       119 apV~g~~~~a~~g~l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~  195 (296)
T PRK15461        119 VPVGRTSDNAITGTLLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEAL  195 (296)
T ss_pred             ccCCCCHHHHHhCcEEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            11111 11  11122223333   7889999999999999988887542 11   12332    23556689987765 7


Q ss_pred             CCCHHHHHHHHH
Q psy9059         196 GTSPKDLDRLTK  207 (269)
Q Consensus       196 Gis~edID~a~~  207 (269)
                      |++++.+=.++.
T Consensus       196 Gld~~~~~~~l~  207 (296)
T PRK15461        196 GLSFDVALKVMS  207 (296)
T ss_pred             CCCHHHHHHHHh
Confidence            888887544444

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.86  E-value=1.6  Score=39.97  Aligned_cols=141  Identities=9%  Similarity=0.013  Sum_probs=89.6

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn  132 (269)
                      .+.+.+..+++.++|  +|+-|+|=  ..=  .+++.++.++.+++++|-|-+.++  +++++. .+. ..|++-+=|--
T Consensus        52 ~~~~~~~~e~~~~aD--vVilavpp--~~~--~~vl~~l~~~l~~~~~ivS~~aGi--~~~~l~~~~~-~~~vvR~MPN~  122 (277)
T PRK06928         52 VELADNEAEIFTKCD--HSFICVPP--LAV--LPLLKDCAPVLTPDRHVVSIAAGV--SLDDLLEITP-GLQVSRLIPSL  122 (277)
T ss_pred             eEEeCCHHHHHhhCC--EEEEecCH--HHH--HHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcC-CCCEEEEeCcc
Confidence            345678888887766  99999983  223  467788877788888888888887  555553 222 23565555544


Q ss_pred             CCCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-----------eccCchhHHHHHHHHHHHHHHHHHcCCCHH
Q psy9059         133 PVDKMQ-LLEIITTEQTSQDTAASAVAVGLKQGKVVITV-----------KDGPGFYTTRILSTMLSEAMRILQEGTSPK  200 (269)
Q Consensus       133 P~~~~~-lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-----------kd~pGfI~nRll~al~~EA~~lv~eGis~e  200 (269)
                      |...-. ..=+..++..+++-.+.+.+++..+|+...+=           ...|+|+ -.++.++...+...  .|++.+
T Consensus       123 ~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~E~~~d~~tal~gsgPA~~-~~~~~al~~a~~~~--ggl~~~  199 (277)
T PRK06928        123 TSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVMTIREENMDIASNLTSSSPGFI-AAIFEEFAEAAVRN--SSLSDE  199 (277)
T ss_pred             HHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEEEEchhhCceeeeeecCHHHHH-HHHHHHHHHHHHHh--CCCCHH
Confidence            433221 22234567788899999999999999876431           2256665 45555665555432  156666


Q ss_pred             HHHHHH
Q psy9059         201 DLDRLT  206 (269)
Q Consensus       201 dID~a~  206 (269)
                      +-.+..
T Consensus       200 ~a~~l~  205 (277)
T PRK06928        200 EAFQFL  205 (277)
T ss_pred             HHHHHH
Confidence            555443

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.70  E-value=0.46  Score=44.04  Aligned_cols=132  Identities=13%  Similarity=0.143  Sum_probs=77.6

Q ss_pred             cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhc-CCCCcEEecCCCCCccccccc---C--CCCC-CCeEEEeec
Q psy9059          58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMY-TYSERLMGSNGLAMVFPLQEQ---I--PIQT-PHLIIGMHY  130 (269)
Q Consensus        58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~-~~~~~iiaSnTS~l~~p~~~~---~--~~~~-p~R~i~~Hf  130 (269)
                      .++++++.++|  +|+-++|.  +.-  +++++++..+ .++++++.+.|.++. |.+..   +  .... ..+++.+  
T Consensus        39 ~~~~~~~~~ad--vvi~~vp~--~~~--~~v~~~l~~~~~~~~~ivi~~s~gi~-~~~~~~~s~~~~~~~~~~~v~~i--  109 (308)
T PRK14619         39 LSLAAVLADAD--VIVSAVSM--KGV--RPVAEQVQALNLPPETIIVTATKGLD-PETTRTPSQIWQAAFPNHPVVVL--  109 (308)
T ss_pred             CCHHHHHhcCC--EEEEECCh--HHH--HHHHHHHHHhcCCCCcEEEEeCCccc-CCCCcCHHHHHHHHcCCCceEEE--
Confidence            57899997766  99999997  356  7889999874 688898888877662 32111   0  0000 1122211  


Q ss_pred             cCCCC------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc----------------------hhHH---
Q psy9059         131 FSPVD------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG----------------------FYTT---  179 (269)
Q Consensus       131 fnP~~------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG----------------------fI~n---  179 (269)
                      ..|..      -.+..=++.  ..+++..+.+..++...|..+....|.-|                      +..|   
T Consensus       110 ~gp~~a~ei~~~~~~~~~~a--g~~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~  187 (308)
T PRK14619        110 SGPNLSKEIQQGLPAATVVA--SRDLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKA  187 (308)
T ss_pred             ECCCcHHHHhcCCCeEEEEE--eCCHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHH
Confidence            12211      011111111  23678889999999999888875555333                      1112   


Q ss_pred             HHHHHHHHHHHHHHH-cCCCHH
Q psy9059         180 RILSTMLSEAMRILQ-EGTSPK  200 (269)
Q Consensus       180 Rll~al~~EA~~lv~-eGis~e  200 (269)
                      .++...++|++.+.+ .|++++
T Consensus       188 a~~~~~~~E~~~l~~~~G~~~~  209 (308)
T PRK14619        188 ALVTRALPEMIRVGTHLGAQTE  209 (308)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc
Confidence            334556678887765 576443

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.17  E-value=2.5  Score=37.94  Aligned_cols=134  Identities=10%  Similarity=0.004  Sum_probs=78.4

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hffn  132 (269)
                      .+.+.+..|++..+|  +|+-|++-  +.-  .+++.++.  ..++.++-|-.++.  +++.+. ......+++-++|-.
T Consensus        49 ~~~~~~~~~~~~~aD--vVilav~p--~~~--~~vl~~l~--~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~  118 (258)
T PRK06476         49 VRIAKDNQAVVDRSD--VVFLAVRP--QIA--EEVLRALR--FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLP  118 (258)
T ss_pred             ceEeCCHHHHHHhCC--EEEEEeCH--HHH--HHHHHHhc--cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCC
Confidence            456678889887766  99999983  444  56676663  34566666655555  555553 333335666777655


Q ss_pred             CCCCC-cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec--cC------chhHHHHHHHHHHHHHHH-HHcCCCHHHH
Q psy9059         133 PVDKM-QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD--GP------GFYTTRILSTMLSEAMRI-LQEGTSPKDL  202 (269)
Q Consensus       133 P~~~~-~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd--~p------GfI~nRll~al~~EA~~l-v~eGis~edI  202 (269)
                      |.... .+.-+.++       .+.+..++..+|..+.+..+  .+      ++.++=+  .++.++..+ .+.|+++++.
T Consensus       119 ~~a~~~g~t~~~~~-------~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~~~--~~~~~~~~~~~~~Gl~~~~a  189 (258)
T PRK06476        119 FVAERKGVTAIYPP-------DPFVAALFDALGTAVECDSEEEYDLLAAASALMATYF--GILETATGWLEEQGLKRQKA  189 (258)
T ss_pred             hhhhCCCCeEecCC-------HHHHHHHHHhcCCcEEECChHhccceeehhccHHHHH--HHHHHHHHHHHHcCCCHHHH
Confidence            54321 11122222       15788899999988764322  11      2333322  355566544 5678887776


Q ss_pred             HHHH
Q psy9059         203 DRLT  206 (269)
Q Consensus       203 D~a~  206 (269)
                      -+++
T Consensus       190 ~~~~  193 (258)
T PRK06476        190 RAYL  193 (258)
T ss_pred             HHHH
Confidence            6654

>PRK08818 prephenate dehydrogenase; Provisional

Probab=91.08  E-value=1.2  Score=42.96  Aligned_cols=104  Identities=9%  Similarity=0.066  Sum_probs=68.5

Q ss_pred             ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhc---CCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCC
Q psy9059          57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMY---TYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSP  133 (269)
Q Consensus        57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~---~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP  133 (269)
                      ..+.++++.++|  +|+=|+|-+--    .++++++.++   ++++++|.=-+|.=.-++....  ....+|++.||..-
T Consensus        42 ~~~~~~~v~~aD--lVilavPv~~~----~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~--~~~~~fVG~HPMaG  113 (370)
T PRK08818         42 SLDPATLLQRAD--VLIFSAPIRHT----AALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAML--ASQAEVVGLHPMTA  113 (370)
T ss_pred             cCCHHHHhcCCC--EEEEeCCHHHH----HHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHHH--hcCCCEEeeCCCCC
Confidence            346788887766  99999998333    4477777765   6899999855553210233322  22346999999654


Q ss_pred             CCC-----CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         134 VDK-----MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       134 ~~~-----~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      +..     ...+=+++.  ..++.++.+.++.+.+|..++.+
T Consensus       114 ~E~s~lf~g~~~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~  153 (370)
T PRK08818        114 PPKSPTLKGRVMVVCEA--RLQHWSPWVQSLCSALQAECVYA  153 (370)
T ss_pred             CCCCcccCCCeEEEeCC--CchhHHHHHHHHHHHcCCEEEEc
Confidence            432     222224544  44555788999999999999988

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=90.09  E-value=0.17  Score=45.91  Aligned_cols=48  Identities=13%  Similarity=0.292  Sum_probs=40.3

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEe--------------ecCCCcCCCchhHHHHHHHhcCCCCcEEe
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVF--------------PLQEQIPIQTPQQMSERIYMYTYSERLMG  103 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E--------------~vpE~l~~K~k~~l~~~l~~~~~~~~iia  103 (269)
                      ..++++++++.|++.|||  +|++              .+.++.+++  +++.++|+++| +++++-
T Consensus        55 ~~~i~~~~d~~~~~~~aD--iVv~t~~~~~~~g~~r~~~~~~n~~i~--~~i~~~i~~~~-p~a~~i  116 (263)
T cd00650          55 DIKVSITDDPYEAFKDAD--VVIITAGVGRKPGMGRLDLLKRNVPIV--KEIGDNIEKYS-PDAWII  116 (263)
T ss_pred             CcEEEECCchHHHhCCCC--EEEECCCCCCCcCCCHHHHHHHHHHHH--HHHHHHHHHHC-CCeEEE
Confidence            368888899999998877  9999              677888899  99999999999 555544

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PLN02712 arogenate dehydrogenase

Probab=89.92  E-value=1.8  Score=44.80  Aligned_cols=112  Identities=9%  Similarity=0.049  Sum_probs=72.5

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHh-cCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYM-YTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF  131 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~-~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff  131 (269)
                      +.+..+++|++.. ++|+|+=|+|-  ..=  .+++.++.. .+++++|+..-+|+=..+...+. .....-++++.||.
T Consensus       412 v~~~~~~~el~~~-~aDvVILavP~--~~~--~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm  486 (667)
T PLN02712        412 VSYFSDADDLCEE-HPEVILLCTSI--LST--EKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPM  486 (667)
T ss_pred             CeEeCCHHHHHhc-CCCEEEECCCh--HHH--HHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCC
Confidence            3566788887753 24599999993  333  566777764 57889998877665211333332 33333479999997


Q ss_pred             CCCCCCc-----EE-----EEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         132 SPVDKMQ-----LL-----EIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       132 nP~~~~~-----lV-----Eiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      .++....     +.     =++.++.+..+.++.+.++++++|..++.+
T Consensus       487 ~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m  535 (667)
T PLN02712        487 FGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM  535 (667)
T ss_pred             CCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence            7665321     11     112345556667777789999999999988

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=88.63  E-value=5.7  Score=36.63  Aligned_cols=143  Identities=10%  Similarity=0.006  Sum_probs=83.8

Q ss_pred             cCHHHHhcC-CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCC-CCCCeEEEeeccC
Q psy9059          58 YTYSERLMG-SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPI-QTPHLIIGMHYFS  132 (269)
Q Consensus        58 ~~~~~a~~~-~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~-~~p~R~i~~Hffn  132 (269)
                      .++++.+.. .++|+|+=++|-. .+   ++++.+|.++++++.++..-|++.  |.+.  . ..+ .+.-+++.++-.-
T Consensus        48 ~s~~~~~~~~~~~dvIi~~vp~~-~~---~~v~~~l~~~l~~g~ivid~st~~--~~~t~~~~~~~~~~g~~~vda~vsG  121 (298)
T TIGR00872        48 ANLRELSQRLSAPRVVWVMVPHG-IV---DAVLEELAPTLEKGDIVIDGGNSY--YKDSLRRYKLLKEKGIHLLDCGTSG  121 (298)
T ss_pred             CCHHHHHhhcCCCCEEEEEcCch-HH---HHHHHHHHhhCCCCCEEEECCCCC--cccHHHHHHHHHhcCCeEEecCCCC
Confidence            455555432 2355999999997 44   577788988887766555443333  2222  1 111 2334566655442


Q ss_pred             CCC--CCcEEEEeCCCCCCHHHHHHHHHHHHhCCc---EEEEEec-cCch----hHHHHHH---HHHHHHHHHHHc-C--
Q psy9059         133 PVD--KMQLLEIITTEQTSQDTAASAVAVGLKQGK---VVITVKD-GPGF----YTTRILS---TMLSEAMRILQE-G--  196 (269)
Q Consensus       133 P~~--~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk---~pv~vkd-~pGf----I~nRll~---al~~EA~~lv~e-G--  196 (269)
                      .+.  ...+.=.+.|   +++.++++..+++.++.   ..+++.+ ..|.    +-|-+..   ..+.|++.+++. |  
T Consensus       122 g~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~  198 (298)
T TIGR00872       122 GVWGRERGYCFMIGG---DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFD  198 (298)
T ss_pred             CHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            221  0112223333   68899999999999886   3455643 2222    2333333   456789999876 5  


Q ss_pred             CCHHHHHHHHH-hc
Q psy9059         197 TSPKDLDRLTK-QF  209 (269)
Q Consensus       197 is~edID~a~~-g~  209 (269)
                      ++++++=.+|+ |.
T Consensus       199 ld~~~~~~i~~~g~  212 (298)
T TIGR00872       199 FDIPEVARVWRRGS  212 (298)
T ss_pred             cCHHHHHHHHcCCc
Confidence            49999998897 64

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=87.38  E-value=1.3  Score=36.93  Aligned_cols=52  Identities=13%  Similarity=0.203  Sum_probs=40.9

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM  109 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l  109 (269)
                      .++.+++++++++.++|  +|+-++|=.  .=  ++++++|.++.+++.+|-+.+=|+
T Consensus        55 ~~i~~t~dl~~a~~~ad--~IiiavPs~--~~--~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   55 ENIKATTDLEEALEDAD--IIIIAVPSQ--AH--REVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             TTEEEESSHHHHHTT-S--EEEE-S-GG--GH--HHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cccccccCHHHHhCccc--EEEecccHH--HH--HHHHHHHhhccCCCCEEEEecCCc
Confidence            37889999999998877  999999873  34  789999999999999999988776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=86.55  E-value=4.9  Score=37.34  Aligned_cols=140  Identities=13%  Similarity=0.052  Sum_probs=80.0

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc----cc-CCCCC--CCeE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ----EQ-IPIQT--PHLI  125 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~----~~-~~~~~--p~R~  125 (269)
                      ++..+++++|++.++|  +|+.++|..       .+ +++-+.+++++++.|.+.++. |.+    .+ ..+..  ..++
T Consensus        61 ~~~~~~~~~e~~~~aD--~Vi~~v~~~-------~~-~~v~~~l~~~~~vi~~~~Gi~-~~~~~~~~l~~~l~~~~~~~~  129 (328)
T PRK14618         61 ELYPTADPEEALAGAD--FAVVAVPSK-------AL-RETLAGLPRALGYVSCAKGLA-PDGGRLSELARVLEFLTQARV  129 (328)
T ss_pred             CeEEeCCHHHHHcCCC--EEEEECchH-------HH-HHHHHhcCcCCEEEEEeeccc-cCCCccchHHHHHHHhcCCCe
Confidence            4677889999987766  999999995       22 333344567777776666652 221    11 11110  1223


Q ss_pred             EEeeccCCCCC----CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch-------------------------
Q psy9059         126 IGMHYFSPVDK----MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF-------------------------  176 (269)
Q Consensus       126 i~~HffnP~~~----~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf-------------------------  176 (269)
                      ...---+.+..    .+..-++.+  .+++..+++..++...|..+....|.-|.                         
T Consensus       130 ~~~~gP~~a~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n  207 (328)
T PRK14618        130 AVLSGPNHAEEIARFLPAATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDN  207 (328)
T ss_pred             EEEECccHHHHHHcCCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCcc
Confidence            22111111111    122333333  46888899999999988877654443331                         


Q ss_pred             hHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Q psy9059         177 YTTRILSTMLSEAMRILQ-EGTSPKDLDRL  205 (269)
Q Consensus       177 I~nRll~al~~EA~~lv~-eGis~edID~a  205 (269)
                      ....+..+.++|++.+.+ .|++++.+-..
T Consensus       208 ~~~~~~~~~~~E~~~la~~~G~~~~~~~~~  237 (328)
T PRK14618        208 AKAALITRGLREMVRFGVALGAEEATFYGL  237 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccchhcC
Confidence            123456777788887765 68766665444

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=85.35  E-value=3.2  Score=39.52  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=68.8

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEe-cCCCCCcccccc--c-CC---CCCC-CeE
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMG-SNGLAMVFPLQE--Q-IP---IQTP-HLI  125 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iia-SnTS~l~~p~~~--~-~~---~~~p-~R~  125 (269)
                      .+.++|..|+++++|  +|+=++|..-..+   +++..+.+++++++++. ++|++   |...  + +.   ++|. -.+
T Consensus        69 A~~AaS~aEAAa~AD--VVIL~LPd~aaV~---eVl~GLaa~L~~GaIVID~STIs---P~t~~~~~e~~l~~~r~d~~v  140 (341)
T TIGR01724        69 VKVVSDDKEAAKHGE--IHVLFTPFGKGTF---SIARTIIEHVPENAVICNTCTVS---PVVLYYSLEKILRLKRTDVGI  140 (341)
T ss_pred             CeecCCHHHHHhCCC--EEEEecCCHHHHH---HHHHHHHhcCCCCCEEEECCCCC---HHHHHHHHHHHhhcCccccCe
Confidence            466789999998877  9999999644443   56677888888877664 44433   3333  1 33   3322 245


Q ss_pred             EEeeccCCCC-CCcEEEEeCC------CCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         126 IGMHYFSPVD-KMQLLEIITT------EQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       126 i~~HffnP~~-~~~lVEiv~~------~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      ..+||-.=|. -..-.-++.+      .-.++|.+++..+++++.|+.|.++
T Consensus       141 ~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~  192 (341)
T TIGR01724       141 SSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV  192 (341)
T ss_pred             eccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence            5556543221 1111122222      2347888999999999999999987

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PLN02712 arogenate dehydrogenase

Probab=83.71  E-value=6.6  Score=40.76  Aligned_cols=112  Identities=10%  Similarity=-0.023  Sum_probs=68.0

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHH-hcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeecc
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIY-MYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYF  131 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~-~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hff  131 (269)
                      +.+..++.|.+.. +||+|+=|+|-  +.=  .+++.++. .+++++++|..-+|.=..+...+ .......++++.||.
T Consensus        95 v~~~~d~~e~~~~-~aDvViLavP~--~~~--~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPM  169 (667)
T PLN02712         95 VSFFLDPHDLCER-HPDVILLCTSI--IST--ENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPM  169 (667)
T ss_pred             CEEeCCHHHHhhc-CCCEEEEcCCH--HHH--HHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCc
Confidence            4566788886532 24599999995  233  56777775 56788888776655321122222 222223379999995


Q ss_pred             CCCC--------CCcEEE--EeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         132 SPVD--------KMQLLE--IITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       132 nP~~--------~~~lVE--iv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      .-+.        ..-++|  +++.+....+.++...++.+.+|..++.+
T Consensus       170 aG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~m  218 (667)
T PLN02712        170 FGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEM  218 (667)
T ss_pred             CCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEe
Confidence            4443        111223  11233334566778889999999999988

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=83.60  E-value=5.1  Score=36.98  Aligned_cols=146  Identities=11%  Similarity=0.095  Sum_probs=84.6

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHH--HHhcCCCCc-EEecCCCCCcccc-cc-c-CC-CCCCCeEE
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSER--IYMYTYSER-LMGSNGLAMVFPL-QE-Q-IP-IQTPHLII  126 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~--l~~~~~~~~-iiaSnTS~l~~p~-~~-~-~~-~~~p~R~i  126 (269)
                      .+.+.|..|+++.+|  +|+=++|.+-.++  .-++..  +...+.++. ++-.+|.+   |. +. + .. ..+..+++
T Consensus        43 ~~~~~s~~~~~~~ad--vVi~~v~~~~~v~--~v~~~~~g~~~~~~~g~ivvd~sT~~---p~~~~~~~~~~~~~G~~~v  115 (292)
T PRK15059         43 AVSVETARQVTEASD--IIFIMVPDTPQVE--EVLFGENGCTKASLKGKTIVDMSSIS---PIETKRFARQVNELGGDYL  115 (292)
T ss_pred             CeecCCHHHHHhcCC--EEEEeCCChHHHH--HHHcCCcchhccCCCCCEEEECCCCC---HHHHHHHHHHHHHcCCCEE
Confidence            355678889887766  9999999876666  544432  333444444 44455443   32 11 2 11 23334555


Q ss_pred             EeeccCCC----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-Cch---hHHHHH----HHHHHHHHHHHH
Q psy9059         127 GMHYFSPV----DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-PGF---YTTRIL----STMLSEAMRILQ  194 (269)
Q Consensus       127 ~~HffnP~----~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-pGf---I~nRll----~al~~EA~~lv~  194 (269)
                      - +|....    ..-.|.=++.   .+++.++++..+++.+|+..+++.+. .|.   ++|-++    ...+.||+.+.+
T Consensus       116 d-aPVsGg~~~a~~g~l~~~~g---G~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~  191 (292)
T PRK15059        116 D-APVSGGEIGAREGTLSIMVG---GDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS  191 (292)
T ss_pred             E-ecCCCCHHHHhcCcEEEEEc---CCHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 454221    1112222233   36889999999999999998888542 222   223332    345788887764


Q ss_pred             -cCCCHHHHHHHHH-hcC
Q psy9059         195 -EGTSPKDLDRLTK-QFG  210 (269)
Q Consensus       195 -eGis~edID~a~~-g~G  210 (269)
                       .|++++.+=.++. +.|
T Consensus       192 ~~Gld~~~~~~~l~~~~~  209 (292)
T PRK15059        192 KAGADPVRVRQALMGGFA  209 (292)
T ss_pred             HcCCCHHHHHHHHHcCcc
Confidence             7888877545554 544

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=83.23  E-value=23  Score=36.70  Aligned_cols=85  Identities=9%  Similarity=0.014  Sum_probs=62.1

Q ss_pred             hHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCC-CCCeEEEeeccCCCC------------CCcEEEEeCCCCCCHH
Q psy9059          86 QQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQ-TPHLIIGMHYFSPVD------------KMQLLEIITTEQTSQD  151 (269)
Q Consensus        86 ~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~-~p~R~i~~HffnP~~------------~~~lVEiv~~~~Ts~e  151 (269)
                      .+++.++.++.++++++.==+|.=.-++..+ ..+. .+.+|++.||..-..            .-..+=+++.+.++++
T Consensus        11 ~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~il~p~~~~~~~   90 (673)
T PRK11861         11 GPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNVVLCALPENAPD   90 (673)
T ss_pred             HHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeEEEecCCCCCHH
Confidence            4688899999999999986666421022333 2232 236899999964432            2345668889999999


Q ss_pred             HHHHHHHHHHhCCcEEEEE
Q psy9059         152 TAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       152 ~~~~~~~~~~~lGk~pv~v  170 (269)
                      .++.+.++.+.+|..++.+
T Consensus        91 ~~~~~~~l~~~~Ga~~~~~  109 (673)
T PRK11861         91 ALARVEAMWRAARADVRAM  109 (673)
T ss_pred             HHHHHHHHHHHcCCEEEEC
Confidence            9999999999999999988

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=82.32  E-value=1.3  Score=38.85  Aligned_cols=42  Identities=2%  Similarity=0.010  Sum_probs=35.7

Q ss_pred             cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEec
Q psy9059          58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGS  104 (269)
Q Consensus        58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaS  104 (269)
                      .++.+.+.++|  +|+|| .|+.+.|  +.+++++.+..+...++++
T Consensus       102 ~~~~~~~~~~D--lVi~a-~Dn~~~k--~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354       102 ENIDKFFKDAD--IVCEA-FDNAEAK--AMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             hHHHHHhcCCC--EEEEC-CCCHHHH--HHHHHHHHHHcCCCcEEEE
Confidence            45677787666  99999 7999999  9999999999988887874

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=81.41  E-value=30  Score=34.42  Aligned_cols=147  Identities=7%  Similarity=0.085  Sum_probs=85.9

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecC--C---------CcCCCchhHHHHHHHhcCCCCcEEe-cCCCCCccccccc---
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQ--E---------QIPIQTPQQMSERIYMYTYSERLMG-SNGLAMVFPLQEQ---  116 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vp--E---------~l~~K~k~~l~~~l~~~~~~~~iia-SnTS~l~~p~~~~---  116 (269)
                      ++++|++++++++.++|  .|+=|||  -         ..|+.-=.+..++|.++++++.++. .||---. ....+   
T Consensus        64 ~~l~~t~~~~~~i~~ad--vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G-tt~~~~~~  140 (473)
T PLN02353         64 KNLFFSTDVEKHVAEAD--IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK-TAEAIEKI  140 (473)
T ss_pred             CCEEEEcCHHHHHhcCC--EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC-hHHHHHHH
Confidence            46999999999998877  8989985  2         2233322467778888888776654 4332110 11111   


Q ss_pred             -CC---------CCCCCeEEEe----eccCCCCCCcEEEEeCCC--CCCHHHHHHHHHHHHhCCc-EEEEEec-----cC
Q psy9059         117 -IP---------IQTPHLIIGM----HYFSPVDKMQLLEIITTE--QTSQDTAASAVAVGLKQGK-VVITVKD-----GP  174 (269)
Q Consensus       117 -~~---------~~~p~R~i~~----HffnP~~~~~lVEiv~~~--~Ts~e~~~~~~~~~~~lGk-~pv~vkd-----~p  174 (269)
                       ..         .-.|||+.--    .+.||+..     |+.+.  .++++..+++.++++.+-+ .++.+.+     --
T Consensus       141 l~~~~~g~~f~v~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~  215 (473)
T PLN02353        141 LTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELS  215 (473)
T ss_pred             HHhhCCCCCeEEEECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHH
Confidence             11         1234443322    23344431     23543  2236688899999988643 4555422     11


Q ss_pred             chhHHHH---HHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059         175 GFYTTRI---LSTMLSEAMRILQ-EGTSPKDLDRLT  206 (269)
Q Consensus       175 GfI~nRl---l~al~~EA~~lv~-eGis~edID~a~  206 (269)
                      -+..|-.   -.+++||-..+.+ -|+++.+|-.++
T Consensus       216 K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~  251 (473)
T PLN02353        216 KLAANAFLAQRISSVNAMSALCEATGADVSQVSHAV  251 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            2333433   3588899887776 588888887776

>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]

Probab=81.12  E-value=44  Score=30.57  Aligned_cols=125  Identities=10%  Similarity=0.068  Sum_probs=82.1

Q ss_pred             CcccchHHHHhhhhhhcccccCCCCCCCcCeEE----------ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHH
Q psy9059          24 SEWLDLQETCQRTVYALCTTVPLVSTSHTGITY----------LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIY   93 (269)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~   93 (269)
                      +.--.+.+|.+.-+-    .+|-|+  +|.|.|          +++-.|||.|||  +|+-=.|- -+.+  -.++.++.
T Consensus        93 ~impkire~vn~~ak----elpkpp--kgaihf~hped~g~~vttddreavedad--~iitwlpk-g~~q--pdiikkfi  161 (343)
T COG4074          93 DIMPKIREYVNDIAK----ELPKPP--KGAIHFLHPEDMGIVVTTDDREAVEDAD--MIITWLPK-GGVQ--PDIIKKFI  161 (343)
T ss_pred             HhhHHHHHHHHHHHH----hCCCCC--cceeeecCHHHceeEEecCcHhhhcCCC--eEEEeccC-CCCC--ccHHHHHH
Confidence            444455667666543    446666  666555          478899998877  88877775 3556  78899988


Q ss_pred             hcCCCCcEEecCCCCCccccccc----CCCCC-CCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhC
Q psy9059          94 MYTYSERLMGSNGLAMVFPLQEQ----IPIQT-PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQ  163 (269)
Q Consensus        94 ~~~~~~~iiaSnTS~l~~p~~~~----~~~~~-p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~l  163 (269)
                      .-.|+.+|++ ++-++  |.+..    +...+ --++-..||-.-|..---|-|..| ..|+++++.+.++.++.
T Consensus       162 ddipegaivt-hacti--pttkf~kifed~gredlnvtsyhpg~vpemkgqvyiaeg-yaseeavn~lyelg~ka  232 (343)
T COG4074         162 DDIPEGAIVT-HACTI--PTTKFKKIFEDMGREDLNVTSYHPGTVPEMKGQVYIAEG-YASEEAVNALYELGEKA  232 (343)
T ss_pred             hcCCCCceEe-eeccc--chHHHHHHHHHhCccccceeccCCCCCccccCcEEEecc-cccHHHHHHHHHHHHHh
Confidence            8899999875 45555  76653    23333 124555566554444444555555 46889999998888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		2e-20
1zcj_A	463	Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas		6e-18
2x58_A	727	The Crystal Structure Of Mfe1 Liganded With Coa Len		8e-18
3zw8_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		9e-18
3zwb_A	742	Crystal Structure Of Rat Peroxisomal Multifunctiona		9e-18
1m75_A	302	Crystal Structure Of The N208s Mutant Of L-3-Hydrox		3e-13
1m76_A	302	Crystal Structure Of The S137c Mutant Of L-3-Hydrox		3e-13
1f12_A	310	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-		3e-13
1lso_A	302	Crystal Structure Of The S137a Mutant Of L-3-Hydrox		4e-13
1lsj_A	302	Crystal Structure Of The E110q Mutant Of L-3-hydrox		4e-13
3had_A	308	Biochemical Characterization And Structure Determin		4e-13
1f0y_A	302	L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac		4e-13
3rqs_A	324	Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh		1e-12
1il0_A	302	X-Ray Crystal Structure Of The E170q Mutant Of Huma		1e-12
2hdh_A	293	Biochemical Characterization And Structure Determin		1e-12
3hdh_A	302	Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge		1e-12
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		2e-12
3mog_A	483	Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge		5e-11
3k6j_A	460	Crystal Structure Of The Dehydrogenase Part Of Mult		3e-10
1zej_A	293	Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog		2e-08

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 1/186 (0%)
Query: 83  QTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEI 142
           +  Q +   +  +   + ++ SN   +   L  +  ++ P   +GMH+F+PV  M L+E+
Sbjct: 406 KVKQAVLAEVENHVREDAILASNTSTISISLLAK-ALKRPENFVGMHFFNPVHMMPLVEV 464
Query: 143 ITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDL 202
           I  E++S    A+ VA   K GK  I V D PGF   R+L        +++  G     +
Sbjct: 465 IRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRI 524
Query: 203 DRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFK 262
           D++ ++FG+P+G A L D VGID G H    +++ F DR      + ++ + E   L  K
Sbjct: 525 DKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQK 584
Query: 263 NKDGYY 268
           N  G+Y
Sbjct: 585 NGKGFY 590

>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P L+IG H+FSP   M+LLE+I +  +S  T A+ +++  K GK+ + V +  GF   R+
Sbjct: 165 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 224
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK 232
           L+   ++   +L+EG+ P+D+D + ++FGF +G   +SD  G+DVG  I K
Sbjct: 225 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRK 275

>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727

Iteration: 1
 Score = 87.4 bits (215), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P L+IG H+FSP   M+LLE+I +  +S  T A+ +++  K GK+ + V +  GF   R+
Sbjct: 429 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 488
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK 232
           L+   ++   +L+EG+ P+D+D + ++FGF +G   +SD  G+DVG  I K
Sbjct: 489 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRK 539

>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742

Iteration: 1
 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P L+IG H+FSP   M+LLE+I +  +S  T A+ +++  K GK+ + V +  GF   R+
Sbjct: 444 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 503
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK 232
           L+   ++   +L+EG+ P+D+D + ++FGF +G   +SD  G+DVG  I K
Sbjct: 504 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRK 554

>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742

Iteration: 1
 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 70/111 (63%)
Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P L+IG H+FSP   M+LLE+I +  +S  T A+ +++  K GK+ + V +  GF   R+
Sbjct: 444 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 503
Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK 232
           L+   ++   +L+EG+ P+D+D + ++FGF +G   +SD  G+DVG  I K
Sbjct: 504 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRK 554

>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E+I T  TSQ T  S V      GK  ++ KD PGF  +R+L   L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVSRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D    I     +   +    
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299

>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D    I     +   +    
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299

>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D    I     +   +    
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299

>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D    I     +   +    
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299

>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D    I     +   +    
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299

>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D    I     +   +    
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299

>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 156 GLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D    I     +   +    
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299

>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV   +L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 178 GLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 237
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P G   L D VG+D    I     +   +    
Sbjct: 238 XEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLH 297
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 298 QPSPSLNKLVAENKFGKKTGEGFY 321

>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+++I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 156 GLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D    I     +   +    
Sbjct: 216 MEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLH 275
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 276 QPSPSLNKLVAENKFGKKTGEGFY 299

>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV   +L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 145 GLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYL 204
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSG 244
            EA+R+ + G + K D+D   K   G+P G   L D VG+D    I     +   +    
Sbjct: 205 XEAIRLYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLH 264
Query: 245 GNLNVLNEMVEKGYLDFKNKDGYY 268
                LN++V +     K  +G+Y
Sbjct: 265 QPSPSLNKLVAENKFGKKTGEGFY 288

>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 127 GMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTML 186
           G+H+F+PV  M+L+E++ T  TSQ T  S V      GK  ++ KD PGF   R+L   L
Sbjct: 156 GLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSCKDTPGFIVNRLLVPYL 215
Query: 187 SEAMRILQEGTSPK-DLDRLTK-QFGFPVGAATLSDEVGID 225
            EA+R+ + G + K D+D   K   G+P+G   L D VG+D
Sbjct: 216 IEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLD 256

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 55/117 (47%)
Query: 125 IIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILST 184
           I+G H+FSP   M LLEI+ T  TS       + VG K  K  + V +  GF   R+   
Sbjct: 445 IVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFP 504
Query: 185 MLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
               AM +++ G  P  +DR   +FG P+G   L D VG  V    A    + F +R
Sbjct: 505 YTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSER 561

>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 100/240 (41%), Gaps = 22/240 (9%)
Query: 31  ETCQRTVYALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE 90
           ETC+RT+  L     + + +   +  +   SERL      A+   L E  P QT      
Sbjct: 64  ETCERTLKRLIPVTDIHALAAADLV-IEAASERLEVKK--ALFAQLAEVCPPQT------ 114
Query: 91  RIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQ 150
              + T +   +    +A          I+ P  + G+H+F+P   M+L+E+++   T+ 
Sbjct: 115 ---LLTTNTSSISITAIAA--------EIKNPERVAGLHFFNPAPVMKLVEVVSGLATAA 163
Query: 151 DTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEG-TSPKDLD-RLTKQ 208
           +       + L  GK  +     PGF   R+     SEA R L+E   +P+ +D  L   
Sbjct: 164 EVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDG 223
Query: 209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
            GFP+G   L+D +G DV   +   +   F          V  E+V  G L  K+  G Y
Sbjct: 224 AGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVY 283

>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYT 178
           ++ P  ++G+H+F+P + ++L+EII    TS    A+A        K+ + V +   F  
Sbjct: 178 LRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVF 237
Query: 179 TRILSTMLSEAMRILQE-GTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKD 233
            R+L     ++ +++ E G  P  +D++   FGF +G  T++D  G DV   + K+
Sbjct: 238 NRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKE 293

>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 119 IQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYT 178
           + +P   +G+H+ +P     L+EI+ +  T   T A       + GK V+  K       
Sbjct: 119 LDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQS--LV 176
Query: 179 TRILSTMLSEAMRILQEGTSPKDLDRLTKQ--------FGFPVGAATLSDEVGIDVGAHI 230
            R  + +LSEA R ++EG   +D+DR+ K         FG P+G     D +G+DV  + 
Sbjct: 177 NRFNAAVLSEASRXIEEGVRAEDVDRVWKHHLGLLYTLFG-PLGNL---DYIGLDVAYYA 232
Query: 231 AKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           +  L K FGD +F       L E ++KG +  K   G Y
Sbjct: 233 SLYLYKRFGDEKFKPPEW--LQEKIKKGEVGVKAGKGIY 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	1e-67
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	4e-05
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	1e-64
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	3e-07
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	3e-60
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	8e-04
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	5e-60
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	6e-04
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	7e-58
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	1e-36
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	2e-34
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	3e-34
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	5e-24
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	4e-21
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	3e-15

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score =  221 bits (565), Expect = 1e-67
 Identities = 51/147 (34%), Positives = 78/147 (53%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P   +GMH+F+PV  M L+E+I  E++S    A+ VA   K GK  I V D PGF   R+
Sbjct: 444 PENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRV 503

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
           L        +++  G     +D++ ++FG+P+G A L D VGID G H    +++ F DR
Sbjct: 504 LFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDR 563

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
                 + ++ + E   L  KN  G+Y
Sbjct: 564 MKDDRRSAIDALYEAKRLGQKNGKGFY 590

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 180 RILSTMLSEAMRILQEG--TSPKDLDR-LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
            ++  +  E +R L++G   +  + D  L    GFP+   GA    D +G+     +A  
Sbjct: 630 WMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQ 689

Query: 234 LSKTFGDRFSGGNLNVLNEMVEKG 257
            ++  G  +       L EM + G
Sbjct: 690 YAE-LGALYHPTAK--LREMAKNG 710

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score =  213 bits (545), Expect = 1e-64
 Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 2/147 (1%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
              I+G H+FSP   M LLEI+ T  TS       + VG K  K  + V +  GF   R+
Sbjct: 442 QDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRM 501

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR 241
                  AM +++ G  P  +DR   +FG P+G   L D VG  V    A    + F +R
Sbjct: 502 FFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVGFGVAIATATQFIENFSER 561

Query: 242 FSGGNLNVLNEMVEKGYLDFKNKDGYY 268
                  ++  M E        + G+Y
Sbjct: 562 TYKS--MIIPLMQEDKRAGEATRKGFY 586

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 180 RILSTMLSEAMRILQEG--TSPKDLDR-LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
                +++EA R+  EG      DLD       GFP    G    +D +G         +
Sbjct: 630 MTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDE 689

Query: 234 LSKTFGDRFSGGNLNVLNEMVEKG 257
            SK +G+ F       L E   KG
Sbjct: 690 WSKAYGEFFKPCAF--LAERGSKG 711

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score =  202 bits (515), Expect = 3e-60
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 9/156 (5%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P L+IG H+FSP   M+LLE+I +  +S  T A+ +++  K GK+ + V +  GF   R+
Sbjct: 444 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 503

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK-------DL 234
           L+   ++   +L+EG+ P+D+D + ++FGF +G   +SD  G+DVG  I K        L
Sbjct: 504 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSL 563

Query: 235 SKTFGDRFSGGNL--NVLNEMVEKGYLDFKNKDGYY 268
                 R  G +    + + + E G    K   G+Y
Sbjct: 564 PPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWY 599

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 12/87 (13%)

Query: 180 RILSTMLSEAMRILQEG--TSPKDLDRLTKQF--GFPV---GAATLSDEVGIDVGAHIAK 232
           R L ++++EA RIL+EG    P+ +D +      G+P    G    +  VG+       +
Sbjct: 641 RCLYSLINEAFRILEEGMAARPEHID-VIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQ 699

Query: 233 DLSKTFGD--RFSGGNLNVLNEMVEKG 257
              +   D  +    +   L  +V +G
Sbjct: 700 KYYRQNPDIPQLEPSDY--LRRLVAQG 724

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score =  195 bits (499), Expect = 5e-60
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 9/156 (5%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P L+IG H+FSP   M+LLE+I +  +S  T A+ +++  K GK+ + V +  GF   R+
Sbjct: 165 PQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRM 224

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAK-------DL 234
           L+   ++   +L+EG+ P+D+D + ++FGF +G   +SD  G+DVG  I K        L
Sbjct: 225 LAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSL 284

Query: 235 SKTFGDRFSGGNL--NVLNEMVEKGYLDFKNKDGYY 268
                 R  G +    + + + E G    K   G+Y
Sbjct: 285 PPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWY 320

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 180 RILSTMLSEAMRILQEG--TSPKDLDR-LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
           R L ++++EA RIL+EG    P+ +D      +G+P    G    +  VG+       + 
Sbjct: 362 RCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQK 421

Query: 234 LSKTFGD--RFSGGNLNVLNEMVEKG 257
             +   D  +    +   L  +V +G
Sbjct: 422 YYRQNPDIPQLEPSDY--LRRLVAQG 445

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score =  190 bits (484), Expect = 7e-58
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 9/148 (6%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  ++G+H+F+P + ++L+EII    TS    A+A        K+ + V +   F   R+
Sbjct: 181 PSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRL 240

Query: 182 LSTMLSEAMRILQE-GTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD 240
           L     ++ +++ E G  P  +D++   FGF +G  T++D  G DV   + K+       
Sbjct: 241 LHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNGFDVMEKLKKENGLEPNP 300

Query: 241 RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
                   +  EM        K   G+Y
Sbjct: 301 --------IEKEMWRLKRYGRKTNKGFY 320

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302

 Score =  130 bits (330), Expect = 1e-36
 Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
                G+H+F+PV  M+L+E+I T  TSQ T  S V      GK  ++ KD PGF   R+
Sbjct: 151 QDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRL 210

Query: 182 LSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
           L   L EA+R+ + G  S +D+D   K   G+P+G   L D VG+D    I     +   
Sbjct: 211 LVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDA 270

Query: 240 D--RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           +           LN++V +     K  +G+Y
Sbjct: 271 ENPLHQPSPS--LNKLVAENKFGKKTGEGFY 299

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293

 Score =  124 bits (314), Expect = 2e-34
 Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 9/152 (5%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P   +G+H+ +P   M L+EI+ +  T   T A       + GK V+  K        R 
Sbjct: 122 PSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQS--LVNRF 179

Query: 182 LSTMLSEAMRILQEGTSPKDLDRLTK-QFGF---PVGAATLSDEVGIDVGAHIAKDLSKT 237
            + +LSEA R+++EG   +D+DR+ K   G      G     D +G+DV  + +  L K 
Sbjct: 180 NAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKR 239

Query: 238 FGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           FGD +F       L E ++KG +  K   G Y
Sbjct: 240 FGDEKFKPPEW--LQEKIKKGEVGVKAGKGIY 269

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score =  127 bits (322), Expect = 3e-34
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 6/152 (3%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P  + G+H+F+P   M+L+E+++   T+ +       + L  GK  +     PGF   R+
Sbjct: 135 PERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRV 194

Query: 182 LSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
                SEA R L+E   +P+ +D   +   GFP+G   L+D +G DV   +   +   F 
Sbjct: 195 ARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFW 254

Query: 240 D--RFSGGNLNVLNEMVEKGYLDFKNKDGYYP 269
              RF    +    E+V  G L  K+  G Y 
Sbjct: 255 QERRFLPSLV--QQELVIGGRLGKKSGLGVYD 284

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483

 Score = 99.3 bits (248), Expect = 5e-24
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI 181
           P ++I           +++ I             A+    +QGK V+ + D PG    R 
Sbjct: 340 PVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRT 393

Query: 182 LSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFPVGAATLSDEVGIDVGAHIAKDLSKTFG 239
           ++ +++EA+  LQ+G  S +D+D   +    +P G      ++G      + ++L   +G
Sbjct: 394 VAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYG 453

Query: 240 DR 241
           + 
Sbjct: 454 EE 455

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} Length = 110

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 160 GLKQGKVVITVKDGPGFY--TTRILSTMLSEAMRILQEGT-SPKDLDRLTKQ-FGFPVGA 215
           G  +G+  I                   ++EA+++++ G  +P+D+D   K     P G 
Sbjct: 1   GHSKGRPQI-DSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGP 59

Query: 216 ATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDG 266
             L+ + G +  A   ++L+K FG   F       L E   +  L     +G
Sbjct: 60  FELAKQFGAEQIAKRLEELAKQFGKKIFEPAKT--LKEGKLEELLKAGKAEG 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	100.0
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	100.0
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	100.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	100.0
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	100.0
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	100.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.96
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.95
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.75
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.57
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	99.55
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.54
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.41
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.41
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.18
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.02
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.01
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.79
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.62
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.4
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.25
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.21
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.17
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.15
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.13
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.08
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.99
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.99
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.94
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.92
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.91
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.91
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.85
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.8
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.79
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.7
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.69
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.67
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.66
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.61
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.6
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.55
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.55
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.53
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.5
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.5
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.47
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.46
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.46
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.39
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.35
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.34
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.29
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.26
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.09
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.93
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.81
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.78
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.7
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.63
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.6
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.47
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.32
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.31
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.3
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.21
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.95
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.83
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.78
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	95.56
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.55
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.5
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	95.28
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.27
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.01
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.88
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.58
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.55
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	93.4
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.18
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.93
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	92.83
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	92.81
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.68
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.96
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	91.22
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	91.2
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	90.57
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	90.22
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	89.98
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	89.78
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	89.71
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	88.99
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	87.7
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	87.45
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	84.77
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	84.4
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	82.52
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	80.57
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	80.49

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=1.2e-55  Score=448.59  Aligned_cols=212  Identities=25%  Similarity=0.417  Sum_probs=193.5

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      ..+++++.++++ +++  ||||||||+|++++|  +++|++|+++|+++||||||||++  |++++ +.+.+|+||+|+|
T Consensus       379 ~~~~~~~~~~~~-l~~--aDlVIEAV~E~l~iK--~~vf~~le~~~~~~aIlASNTSsl--~i~~ia~~~~~p~r~ig~H  451 (742)
T 3zwc_A          379 KPKLRFSSSTKE-LST--VDLVVEAVFEDMNLK--KKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDRPQLVIGTH  451 (742)
T ss_dssp             CCCEEEESCGGG-GGS--CSEEEECCCSCHHHH--HHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSCGGGEEEEE
T ss_pred             hhhhcccCcHHH-Hhh--CCEEEEeccccHHHH--HHHHHHHhhcCCCCceEEecCCcC--ChHHHHhhcCCcccccccc
Confidence            578899988765 655  559999999999999  999999999999999999999998  88885 7899999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQF  209 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~  209 (269)
                      |||||+.|||||||++++||+++++++.+|++++||+||+++|+||||+||++.++++||++++++|+++++||.+++++
T Consensus       452 FfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~  531 (742)
T 3zwc_A          452 FFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEF  531 (742)
T ss_dssp             CCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             ccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCcccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHhhchHHHHHHHHHHHHHhCCC-------C--CCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         210 GFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR-------F--SGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       210 G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~-------~--~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|||||+++|++|+|+..++++.+....+..       .  ...+++++++|+++|++|+|||+|||+
T Consensus       532 G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~mv~~G~lG~KtG~GFY~  600 (742)
T 3zwc_A          532 GFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFGQKTGKGWYQ  600 (742)
T ss_dssp             TCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCCTTEETTEECCCHHHHHHTTTCCBGGGTBSSSE
T ss_pred             CCCCChHHHHHHhCHHHHHHHHHHHHhhCcccCccchhhhcccccccHHHHHHHHCCCccccCCCeeEE
Confidence            99999999999999999999998876543210       0  001357899999999999999999995

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=100.00  E-value=4.7e-55  Score=406.27  Aligned_cols=172  Identities=20%  Similarity=0.246  Sum_probs=163.7

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      -++|+++++++||++++|  |||||||||+++|  +++|++|+++|+++||||||||++  +++++ +.+.||+||+|+|
T Consensus        72 l~~i~~~~~l~~a~~~ad--~ViEav~E~l~iK--~~lf~~l~~~~~~~aIlaSNTSsl--~is~ia~~~~~p~r~ig~H  145 (319)
T 3ado_A           72 LSLISSCTNLAEAVEGVV--HIQECVPENLDLK--RKIFAQLDSIVDDRVVLSSSSSCL--LPSKLFTGLAHVKQCIVAH  145 (319)
T ss_dssp             HHTEEEECCHHHHTTTEE--EEEECCCSCHHHH--HHHHHHHHTTCCSSSEEEECCSSC--CHHHHHTTCTTGGGEEEEE
T ss_pred             HhhcccccchHhHhccCc--EEeeccccHHHHH--HHHHHHHHHHhhhcceeehhhhhc--cchhhhhhccCCCcEEEec
Confidence            468999999999997766  9999999999999  999999999999999999999999  77785 7899999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK  207 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~  207 (269)
                      |||||++|||||||+|++||+++++++.+|++++||+|+++ +|+||||+|||+.+++|||++++++|+ |++|||++|+
T Consensus       146 ffNP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~  225 (319)
T 3ado_A          146 PVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMS  225 (319)
T ss_dssp             ECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred             CCCCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999977 999999999999999999999999999 9999999998


Q ss_pred             -hcCCC---chhhHHHHhhchHHHH
Q psy9059         208 -QFGFP---VGAATLSDEVGIDVGA  228 (269)
Q Consensus       208 -g~G~p---~GPf~~~D~~Gld~~~  228 (269)
                       |+|+|   ||||+++|++|++...
T Consensus       226 ~g~g~~~a~mGPf~~~Dl~G~~~~~  250 (319)
T 3ado_A          226 DGLGMRYAFIGPLETMHLNAEGMLS  250 (319)
T ss_dssp             TTHHHHHTTSCHHHHHHHTTTSHHH
T ss_pred             hCCCCCCCCcchhhhhhhcCccHHH
Confidence             99987   8999999999987543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=100.00  E-value=1.5e-50  Score=392.00  Aligned_cols=204  Identities=22%  Similarity=0.406  Sum_probs=189.6

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .++|++++|++ +++++|  +|+|||||++++|  +++|++|++++++++||+||||++  |++++ +.+.+|+|++++|
T Consensus       116 ~~~i~~t~dl~-al~~aD--lVIeAVpe~~~vk--~~v~~~l~~~~~~~aIlasnTSsl--~i~~ia~~~~~p~r~iG~H  188 (460)
T 3k6j_A          116 NANLKITSDFH-KLSNCD--LIVESVIEDMKLK--KELFANLENICKSTCIFGTNTSSL--DLNEISSVLRDPSNLVGIH  188 (460)
T ss_dssp             HTTEEEESCGG-GCTTCS--EEEECCCSCHHHH--HHHHHHHHTTSCTTCEEEECCSSS--CHHHHHTTSSSGGGEEEEE
T ss_pred             hcceEEeCCHH-HHccCC--EEEEcCCCCHHHH--HHHHHHHHhhCCCCCEEEecCCCh--hHHHHHHhccCCcceEEEE
Confidence            36789999995 776655  9999999999999  999999999999999999999998  77775 6788999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHh
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRIL-QEGTSPKDLDRLTKQ  208 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv-~eGis~edID~a~~g  208 (269)
                      ||||++.+++||||+++.|++++++++..+++.+||.|++++|.||||+||++.++++||++++ ++|+++++||++|++
T Consensus       189 ffnPv~~m~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~~  268 (460)
T 3k6j_A          189 FFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITN  268 (460)
T ss_dssp             CCSSTTTCCEEEEECCSSCCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred             ecchhhhCCEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999 788899999999999


Q ss_pred             cCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|+|||||+++|++|+|+..++++.+    +.  .  +++++++|+++|++|+|||+|||+
T Consensus       269 ~G~pmGPf~l~D~vGlD~~~~i~~~~----~~--~--~~~~l~~~v~~G~lG~KtG~GFY~  321 (460)
T 3k6j_A          269 FGFLMGPMTVADMNGFDVMEKLKKEN----GL--E--PNPIEKEMWRLKRYGRKTNKGFYK  321 (460)
T ss_dssp             HTBSSCHHHHHHHHCTHHHHHHHHHS----CC--C--CCHHHHHHHHTTCCBGGGTBSSSE
T ss_pred             cCCCcCHHHHHHHhchHHHHHHHHHh----cc--C--chHHHHHHHHCCCCeeecCCEEEE
Confidence            99999999999999999999888765    22  2  358999999999999999999995

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.1e-49  Score=366.26  Aligned_cols=210  Identities=24%  Similarity=0.370  Sum_probs=195.5

Q ss_pred             CCCCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeE
Q psy9059          47 VSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLI  125 (269)
Q Consensus        47 ~~~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~  125 (269)
                      .++.-+++++++|+++ ++++|  +|+||+||++++|  +.+|++|+.+  +++||+||||++  +++.+ +.+.+|+|+
T Consensus        55 ~~~~~~~i~~~~~~~~-~~~aD--lVieavpe~~~vk--~~l~~~l~~~--~~~IlasntSti--~~~~~a~~~~~~~r~  125 (293)
T 1zej_A           55 PEELLSKIEFTTTLEK-VKDCD--IVMEAVFEDLNTK--VEVLREVERL--TNAPLCSNTSVI--SVDDIAERLDSPSRF  125 (293)
T ss_dssp             CGGGGGGEEEESSCTT-GGGCS--EEEECCCSCHHHH--HHHHHHHHTT--CCSCEEECCSSS--CHHHHHTTSSCGGGE
T ss_pred             HHHHhCCeEEeCCHHH-HcCCC--EEEEcCcCCHHHH--HHHHHHHhcC--CCCEEEEECCCc--CHHHHHHHhhcccce
Confidence            3333468999999986 76655  9999999999999  9999999998  999999999998  56664 568999999


Q ss_pred             EEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy9059         126 IGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRL  205 (269)
Q Consensus       126 i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a  205 (269)
                      +|+|||||++.++++||++++.|++++++++..+++.+||.|++++|.  |++||++.++++||++++++|+++++||.+
T Consensus       126 ~G~Hf~~Pv~~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~  203 (293)
T 1zej_A          126 LGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRV  203 (293)
T ss_dssp             EEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             EeEEecCccccCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999987  999999999999999999999999999999


Q ss_pred             HH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         206 TK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       206 ~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      ++ |+|+|+   |||+++|.+|+|++.++++.+++.+++ +|+  +++++++|+++|++|+|||+|||+
T Consensus       204 ~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~~~~~--~~~~l~~~v~~G~lG~Ktg~Gfy~  270 (293)
T 1zej_A          204 WKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEKFK--PPEWLQEKIKKGEVGVKAGKGIYE  270 (293)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCGGGS--CCHHHHHHHHTTCCBGGGTBSSSB
T ss_pred             HHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCCCcCC--CCHHHHHHHHCCCCccccCCEeee
Confidence            98 999999   999999999999999999999999987 787  578999999999999999999995

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=100.00  E-value=8.7e-49  Score=381.94  Aligned_cols=209  Identities=23%  Similarity=0.407  Sum_probs=195.8

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      ++|+++++++ +++++|  +|+|||||++++|  +++|++|++++++++||+||||++  +++.+ +.+.+|+|++++||
T Consensus        71 ~~i~~~~~~~-~~~~aD--lVIeAVpe~~~vk--~~v~~~l~~~~~~~~IlasntSti--~i~~ia~~~~~p~~~ig~hf  143 (483)
T 3mog_A           71 KRLIPVTDIH-ALAAAD--LVIEAASERLEVK--KALFAQLAEVCPPQTLLTTNTSSI--SITAIAAEIKNPERVAGLHF  143 (483)
T ss_dssp             HTEEEECCGG-GGGGCS--EEEECCCCCHHHH--HHHHHHHHHHSCTTCEEEECCSSS--CHHHHTTTSSSGGGEEEEEE
T ss_pred             hceeEeCCHH-HhcCCC--EEEEcCCCcHHHH--HHHHHHHHHhhccCcEEEecCCCC--CHHHHHHHccCccceEEeee
Confidence            4788999985 676655  9999999999999  999999999999999999999998  67764 67889999999999


Q ss_pred             cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-h
Q psy9059         131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-Q  208 (269)
Q Consensus       131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g  208 (269)
                      |||++.++++||++++.|++++++++.++++++||.|++++|.|||++||++.++++||++++++|+ ++++||++|+ |
T Consensus       144 ~~Pa~v~~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~  223 (483)
T 3mog_A          144 FNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDG  223 (483)
T ss_dssp             CSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHT
T ss_pred             cChhhhCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 9999999998 9


Q ss_pred             cCCCchhhHHHHhhchHHHHHHHHHHHHHh-CC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTF-GD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~-g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|+|||||+++|++|+|+..++++.+++.+ ++ +|.  +++++++|+++|++|+|||+|||+
T Consensus       224 ~G~p~GP~~l~D~~Gld~~~~v~~~~~~~~~~~~~~~--~~~~~~~~v~~g~lG~k~g~GfY~  284 (483)
T 3mog_A          224 AGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRFL--PSLVQQELVIGGRLGKKSGLGVYD  284 (483)
T ss_dssp             TCCSSCHHHHHHHHCHHHHHHHHHHHHHHTTSCGGGC--CCHHHHHHHHTTCCBGGGTBSSSB
T ss_pred             CCCCCCHHHHHHHhchHHHHHHHHHHHHHhcCCCccC--chHHHHHHHHCCCCceeCCCEeEE
Confidence            999999999999999999999999998876 33 676  568999999999999999999995

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=100.00  E-value=3.7e-49  Score=358.18  Aligned_cols=207  Identities=17%  Similarity=0.299  Sum_probs=191.6

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      ++++++.+++|++.++|  +|+|||||++++|  +++|++|++++++++||+||||++  +++.+ +.+.+|+|++++||
T Consensus        71 ~~i~~~~~~~~~~~~aD--lVi~av~~~~~~~--~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~~~~ig~h~  144 (283)
T 4e12_A           71 GGIRYSDDLAQAVKDAD--LVIEAVPESLDLK--RDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRGDKFLALHF  144 (283)
T ss_dssp             HHCEEESCHHHHTTTCS--EEEECCCSCHHHH--HHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCGGGEEEEEE
T ss_pred             cCeEEeCCHHHHhccCC--EEEEeccCcHHHH--HHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCcceEEEcc
Confidence            56889999999997766  9999999999999  999999999999999999999998  66664 56788999999999


Q ss_pred             cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-
Q psy9059         131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-  207 (269)
Q Consensus       131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-  207 (269)
                      |||++.++++|+++++.|++++++++.++++.+|+.|+++ +|.||||+||++.++++||++++++|+ ++++||++++ 
T Consensus       145 ~~p~~~~~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~  224 (283)
T 4e12_A          145 ANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRI  224 (283)
T ss_dssp             CSSTTTSCEEEEEECTTSCHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred             CCCcccCceEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999 899999999999999999999999998 9999999998 


Q ss_pred             hcCCCchhhHHHHhhchHHHHHHHHHHHHHhC-CCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         208 QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFG-DRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       208 g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g-~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|+|+|||+++|++|+|+.++++++   ..+ +++.  +++++++|+++|++|+|||+|||+
T Consensus       225 ~~g~~~Gp~~~~D~~Gld~~~~~~~~---~~~~~~~~--~~~~~~~~v~~g~lG~k~g~Gfy~  282 (283)
T 4e12_A          225 GTGAPKGPFEIFDIVGLTTAYNISSV---SGPKQREF--AAYLKENYIDKGKLGLATGEGFYR  282 (283)
T ss_dssp             HHCCSSCHHHHHHHHCHHHHHHHHHT---SCHHHHHH--HHHHHHHTGGGTCCBGGGTBSSSB
T ss_pred             ccCCCcCHHHHHHhccHHHHHHHHhc---cccCcccC--chHHHHHHHHCCCCceeCCeEeec
Confidence            99999999999999999999998873   122 2344  678899999999999999999995

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=100.00  E-value=3.2e-47  Score=347.41  Aligned_cols=210  Identities=26%  Similarity=0.425  Sum_probs=198.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      ++++++++++|++.++|  +|+|||||++++|  ++++++|.+++++++||+||||++  +++.+ ..+.+|+|++++||
T Consensus        86 ~~i~~~~~~~~~~~~aD--~Vi~avp~~~~~~--~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~~~~g~h~  159 (302)
T 1f0y_A           86 STIATSTDAASVVHSTD--LVVEAIVENLKVK--NELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQDRFAGLHF  159 (302)
T ss_dssp             HTEEEESCHHHHTTSCS--EEEECCCSCHHHH--HHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGGGEEEEEE
T ss_pred             hceEEecCHHHhhcCCC--EEEEcCcCcHHHH--HHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCcccEEEEec
Confidence            47899999999997766  9999999999999  999999999999999999999998  66665 56788999999999


Q ss_pred             cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-h
Q psy9059         131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-Q  208 (269)
Q Consensus       131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g  208 (269)
                      +||++.++++||++++.|++++++.+.++++.+|+.|++++|.|||++||++.+++|||++++++|+ ++++||.+++ |
T Consensus       160 ~~P~~~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g  239 (302)
T 1f0y_A          160 FNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLG  239 (302)
T ss_dssp             CSSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             CCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 9999999998 9


Q ss_pred             cCCCchhhHHHHhhchHHHHHHHHHHHHHh-CC-CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         209 FGFPVGAATLSDEVGIDVGAHIAKDLSKTF-GD-RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       209 ~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~-g~-~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|+|+|||+++|.+|+|.+.++++++++.+ |+ +|+  |+++|++|+++|++|+|||+|||+
T Consensus       240 ~g~p~GP~~~~D~~Gld~~~~~~~~l~~~~~~~~~~~--~~~~l~~~~~~g~~G~k~g~Gfy~  300 (302)
T 1f0y_A          240 AGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQ--PSPSLNKLVAENKFGKKTGEGFYK  300 (302)
T ss_dssp             HCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGC--CCHHHHHHHHTTCCBTTTTBSSSB
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCCccC--cCHHHHHHHHcCCCccccCcEeee
Confidence            999999999999999999999999999988 77 487  579999999999999999999995

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=4.5e-47  Score=385.41  Aligned_cols=209  Identities=26%  Similarity=0.420  Sum_probs=185.9

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      .+++++++|+ ++++++|  +|+|||||++++|  +++|++|++++++++||+||||++  |++.+ +.+.+|+|++++|
T Consensus       377 ~~~i~~~~d~-~~~~~aD--lVIeaVpe~~~vk--~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~p~~~iG~h  449 (725)
T 2wtb_A          377 MSLLKGSLDY-ESFRDVD--MVIEAVIENISLK--QQIFADLEKYCPQHCILASNTSTI--DLNKIGERTKSQDRIVGAH  449 (725)
T ss_dssp             TTSEEEESSS-GGGTTCS--EEEECCCSCHHHH--HHHHHHHHHHSCTTCEEEECCSSS--CHHHHTTTCSCTTTEEEEE
T ss_pred             hcceEEeCCH-HHHCCCC--EEEEcCcCCHHHH--HHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHHhcCCCCEEEec
Confidence            4678999999 6786655  9999999999999  999999999999999999999998  67765 5678999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQF  209 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~  209 (269)
                      ||||++.++++||++|+.|++++++++.++++.+||.|++++|.|||++||++.++++||+.++++|+++++||.++.++
T Consensus       450 f~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~  529 (725)
T 2wtb_A          450 FFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKF  529 (725)
T ss_dssp             ECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhhHHHHhhchHHHHHHHHHHHHHhCCC-CCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         210 GFPVGAATLSDEVGIDVGAHIAKDLSKTFGDR-FSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       210 G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~-~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      |+|||||+++|++|+|+..++++.+++.++++ |.  + +++++|+++|++|+|||+|||+
T Consensus       530 g~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~~--~-~~l~~~v~~g~lG~k~g~GfY~  587 (725)
T 2wtb_A          530 GMPMGPFRLCDLVGFGVAIATATQFIENFSERTYK--S-MIIPLMQEDKRAGEATRKGFYL  587 (725)
T ss_dssp             TCSSCHHHHHHHHCHHHHHHHHHHHHHHSGGGCCC--C-THHHHHHTTC------------
T ss_pred             CCCCCHHHHHHHhchHHHHHHHHHHHHhcCCccCC--h-HHHHHHHHCCCceecCCceeEe
Confidence            99999999999999999999999999988877 76  4 8899999999999999999995

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=4.8e-47  Score=384.73  Aligned_cols=209  Identities=28%  Similarity=0.484  Sum_probs=197.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      +++++++|+ ++++++|  +|+|||||++++|  +++|++|++++++++||+||||++  |++.+ +.+.+|+|++++||
T Consensus       380 ~~i~~~~d~-~~~~~aD--lVIeaV~e~~~vk--~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~~~~~ig~hf  452 (715)
T 1wdk_A          380 NGIRPTLSY-GDFGNVD--LVVEAVVENPKVK--QAVLAEVENHVREDAILASNTSTI--SISLLAKALKRPENFVGMHF  452 (715)
T ss_dssp             HHEEEESSS-TTGGGCS--EEEECCCSCHHHH--HHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSCGGGEEEEEC
T ss_pred             cCeEEECCH-HHHCCCC--EEEEcCCCCHHHH--HHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhcCccceEEEEc
Confidence            468899999 7887766  9999999999999  999999999999999999999998  67765 56789999999999


Q ss_pred             cCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcC
Q psy9059         131 FSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFG  210 (269)
Q Consensus       131 fnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~G  210 (269)
                      |||++.++++||++++.|++++++.+.++++.+||.|++++|.|||++||++.++++||+.++++|+++++||.++.++|
T Consensus       453 ~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G  532 (715)
T 1wdk_A          453 FNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFG  532 (715)
T ss_dssp             CSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHT
T ss_pred             cCCcccCceEEEEECCCCCHHHHHHHHHHHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChh--HHHHHHHHcCCCCCCCCCccCC
Q psy9059         211 FPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNL--NVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       211 ~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~--~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|||||+++|++|+|+..++++.+++.++++|.  ++  +++++|+++|++|+|||+|||+
T Consensus       533 ~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~~~~--~~~~~~l~~~v~~g~lG~k~g~GfY~  591 (715)
T 1wdk_A          533 WPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMK--DDRRSAIDALYEAKRLGQKNGKGFYA  591 (715)
T ss_dssp             CSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHC--CSSCCHHHHHHHTTCCBTTTTBSSSE
T ss_pred             CCCCHHHHHHHhhHHHHHHHHHHHHHhcCCccC--CChHHHHHHHHhCchhhhcCCcEEEe
Confidence            999999999999999999999999988888777  45  7999999999999999999995

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=100.00  E-value=2.2e-44  Score=348.72  Aligned_cols=207  Identities=25%  Similarity=0.446  Sum_probs=186.5

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hffn  132 (269)
                      .+.++++ +++.++|  +|+|||||++++|  +++|++|++++++++||+||||++  +++.+ +.+.+|+|++++||||
T Consensus       103 ~~i~~~~-~~~~~aD--lVIeaVpe~~~~k--~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~~~~~ig~hf~~  175 (463)
T 1zcj_A          103 LRFSSST-KELSTVD--LVVEAVFEDMNLK--KKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDRPQLVIGTHFFS  175 (463)
T ss_dssp             EEEESCG-GGGTTCS--EEEECCCSCHHHH--HHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSCGGGEEEEEECS
T ss_pred             hhhcCCH-HHHCCCC--EEEEcCCCCHHHH--HHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcCCcceEEeecCC
Confidence            4457777 6776655  9999999999999  999999999999999999999998  66664 5778999999999999


Q ss_pred             CCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Q psy9059         133 PVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFP  212 (269)
Q Consensus       133 P~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGis~edID~a~~g~G~p  212 (269)
                      |++.++++||++|+.|++++++++..+++.+||.|+++++.|||++||++.++++||++++++|+++++||.+++++|+|
T Consensus       176 P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~G~~~~~id~~~~~~g~p  255 (463)
T 1zcj_A          176 PAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFK  255 (463)
T ss_dssp             STTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCS
T ss_pred             CcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHhhchHHHHHHHHHHH---HH-------hC-CCCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         213 VGAATLSDEVGIDVGAHIAKDLS---KT-------FG-DRFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       213 ~GPf~~~D~~Gld~~~~~~~~l~---~~-------~g-~~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|||+++|.+|+|+..++++.+.   +.       .+ ..++  +++++++|+++|++|+|||+|||+
T Consensus       256 ~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~v~~g~lG~k~g~Gfy~  321 (463)
T 1zcj_A          256 MGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSR--YSPLGDMLCEAGRFGQKTGKGWYQ  321 (463)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEE--CCTHHHHHHHTTCCBGGGTBSSEE
T ss_pred             CcHHHHHHHcchHHHHHHHHHHhhhccccccccccccccccc--chHHHHHHHHCCCCeeecCCeecc
Confidence            99999999999999999998772   11       11 1112  357999999999999999999995

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.96  E-value=7.4e-30  Score=248.58  Aligned_cols=155  Identities=18%  Similarity=0.291  Sum_probs=139.2

Q ss_pred             cEEecCCCCCcccccccCCCCCCCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHH
Q psy9059         100 RLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT  179 (269)
Q Consensus       100 ~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~n  179 (269)
                      .+++ .|++.  +.+.. ...+|+|++++|++|    +++|||++++.|++++++++.+|++++||.|+.++|.||||+|
T Consensus       320 ~~~~-~~~~~--~~~~~-~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~  391 (483)
T 3mog_A          320 VLLI-ETQGE--TAQAL-AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIW  391 (483)
T ss_dssp             EEEE-ECSSS--CHHHH-HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHH
T ss_pred             hhhc-ccCCc--chHHH-hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHH
Confidence            3444 56665  55544 567899999999999    7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC-CCCCChhHHHHHHHHc
Q psy9059         180 RILSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD-RFSGGNLNVLNEMVEK  256 (269)
Q Consensus       180 Rll~al~~EA~~lv~eGi-s~edID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~~~~~lL~~lv~~  256 (269)
                      |++.+++|||+++++||| |++|||.+|+ |+|||+|||+++|.+|+|.+.++++.+++.+|+ +|+  |+++|++|+++
T Consensus       392 Rll~~~~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~~~~~--p~~lL~~~v~~  469 (483)
T 3mog_A          392 RTVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGEERYR--PCSLLRQRALL  469 (483)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCCGGGC--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHc
Confidence            999999999999999999 9999999998 999999999999999999999999999999986 898  67999999999


Q ss_pred             CCCCCCCC
Q psy9059         257 GYLDFKNK  264 (269)
Q Consensus       257 G~lG~ksG  264 (269)
                      |++|..-|
T Consensus       470 G~~~~~~~  477 (483)
T 3mog_A          470 ESGYESEG  477 (483)
T ss_dssp             HTCC----
T ss_pred             CCCCCCCC
Confidence            99987655

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.95  E-value=2.3e-29  Score=199.63  Aligned_cols=103  Identities=23%  Similarity=0.376  Sum_probs=86.3

Q ss_pred             hCCcEEE-EEeccCchhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHh
Q psy9059         162 KQGKVVI-TVKDGPGFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTF  238 (269)
Q Consensus       162 ~lGk~pv-~vkd~pGfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~  238 (269)
                      .++|.|| .++|.||||+||++.+++|||++++++|+ |++|||.+|+ |+|||+|||+++|.+|+|++.++++++++.+
T Consensus         3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~   82 (110)
T 3ctv_A            3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQF   82 (110)
T ss_dssp             --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4689999 77999999999999999999999999999 9999999998 9999999999999999999999999999999


Q ss_pred             CC-CCCCChhHHHHHHHHcCCCCCCCCCc
Q psy9059         239 GD-RFSGGNLNVLNEMVEKGYLDFKNKDG  266 (269)
Q Consensus       239 g~-~~~~~~~~lL~~lv~~G~lG~ksG~G  266 (269)
                      |+ +|.  ++++|++|+++|++|+|||+|
T Consensus        83 g~~~~~--p~~~L~~~v~~G~lG~k~g~G  109 (110)
T 3ctv_A           83 GKKIFE--PAKTLKEGKLEELLKAGKAEG  109 (110)
T ss_dssp             CCGGGS--CCHHHHTTTHHHHHHHHHHC-
T ss_pred             CCCcCC--CCHHHHHHHHcCCCCccCCCC
Confidence            98 787  679999999999999999998

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.75  E-value=1.8e-18  Score=167.19  Aligned_cols=110  Identities=19%  Similarity=0.255  Sum_probs=100.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHH
Q psy9059         146 EQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLS  219 (269)
Q Consensus       146 ~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~  219 (269)
                      ..|++++.+.+.++.+.+|+.|+.++  +|+|+||++.+++|||+++++|||  +++|||.+|+ |+|||+   |||+++
T Consensus       330 ~~~~~~~~~~~~~~~~~~g~~~~~~~--~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~  407 (463)
T 1zcj_A          330 HKPDPWLSTFLSQYREVHHIEQRTIS--KEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYA  407 (463)
T ss_dssp             EEECHHHHHHHHHHHHHTTCCCCCCC--HHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCcccCC--HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHH
Confidence            35899999999999888898776553  799999999999999999999999  5999999998 999998   999999


Q ss_pred             HhhchHHHHHHHHHHHHHhCC--CCCCChhHHHHHHHHcCCC
Q psy9059         220 DEVGIDVGAHIAKDLSKTFGD--RFSGGNLNVLNEMVEKGYL  259 (269)
Q Consensus       220 D~~Gld~~~~~~~~l~~~~g~--~~~~~~~~lL~~lv~~G~l  259 (269)
                      |.+|++.+.++++.+++.+|+  +|+  |+++|++|+++|+.
T Consensus       408 D~~Gl~~~~~~~~~l~~~~g~~~~~~--p~~lL~~~v~~G~~  447 (463)
T 1zcj_A          408 ASVGLPTVLEKLQKYYRQNPDIPQLE--PSDYLRRLVAQGSP  447 (463)
T ss_dssp             HHHCHHHHHHHHHHHHHHCTTCGGGS--CCHHHHHHHHTTCC
T ss_pred             HHhCHHHHHHHHHHHHHHhCCCccCC--CCHHHHHHHHcCCC
Confidence            999999999999999999998  788  67999999998873

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.57  E-value=4.6e-16  Score=150.62  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCC--CCCCh
Q psy9059         175 GFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDR--FSGGN  246 (269)
Q Consensus       175 GfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~--~~~~~  246 (269)
                      ..|.+|++.+++|||+++++|||  +++|||.+|. |+|||.   |||+++|.+|++.+.+.++.+.+.+|++  |+  |
T Consensus       356 ~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~~~~~~--p  433 (460)
T 3k6j_A          356 QDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYI--V  433 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTTCGGGS--C
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCC--C
Confidence            57899999999999999999999  6999999998 999997   9999999999999999999999999997  88  6


Q ss_pred             hHHHHHHHHcCCCCCCCCC
Q psy9059         247 LNVLNEMVEKGYLDFKNKD  265 (269)
Q Consensus       247 ~~lL~~lv~~G~lG~ksG~  265 (269)
                      +++|.+|+++|++|.|||.
T Consensus       434 ~~~L~~~a~~g~~~~~~~~  452 (460)
T 3k6j_A          434 ADALKTANVSTGSSGSSGG  452 (460)
T ss_dssp             CHHHHHHC-----------
T ss_pred             CHHHHHHHHcCCCccccCC
Confidence            8999999999999999994

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=99.55  E-value=1.1e-16  Score=147.14  Aligned_cols=142  Identities=12%  Similarity=0.139  Sum_probs=121.6

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeec--------------CCCcCCCchhHHHHHHHhcCCCCcEE--ecCCCCCccccc
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPL--------------QEQIPIQTPQQMSERIYMYTYSERLM--GSNGLAMVFPLQ  114 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--------------pE~l~~K~k~~l~~~l~~~~~~~~ii--aSnTS~l~~p~~  114 (269)
                      ..+++.+.++ ++++++|  +|++++              +|+.++|  ++++++|+++++ ++++  +||+|++  ...
T Consensus        58 ~~~i~~t~d~-~a~~~aD--iVi~avg~p~~~g~~r~d~~~~~~~i~--~~i~~~i~~~~~-~~iii~~sNp~~~--~~~  129 (317)
T 2ewd_A           58 TSKVIGTDDY-ADISGSD--VVIITASIPGRPKDDRSELLFGNARIL--DSVAEGVKKYCP-NAFVICITNPLDV--MVS  129 (317)
T ss_dssp             CCCEEEESCG-GGGTTCS--EEEECCCCSSCCSSCGGGGHHHHHHHH--HHHHHHHHHHCT-TSEEEECCSSHHH--HHH
T ss_pred             CcEEEECCCH-HHhCCCC--EEEEeCCCCCCCCCcHHHHHHhhHHHH--HHHHHHHHHHCC-CcEEEEeCChHHH--HHH
Confidence            3578888888 8887766  999999              8888999  999999999986 8888  9999987  444


Q ss_pred             cc-CCCCC-CCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHH---HHHHHHHHH
Q psy9059         115 EQ-IPIQT-PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTR---ILSTMLSEA  189 (269)
Q Consensus       115 ~~-~~~~~-p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nR---ll~al~~EA  189 (269)
                      .+ ....+ |+|++|+                  .|+.++......+++++|+.|   +|++|||+||   .+.++|++|
T Consensus       130 ~~~~~~~~~~~rviG~------------------~t~ld~~r~~~~la~~lg~~~---~~v~~~v~g~Hg~~~~~~~~~a  188 (317)
T 2ewd_A          130 HFQKVSGLPHNKVCGM------------------AGVLDSSRFRTFIAQHFGVNA---SDVSANVIGGHGDGMVPATSSV  188 (317)
T ss_dssp             HHHHHHCCCGGGEEES------------------CHHHHHHHHHHHHHHHHTSCG---GGEECCEEBCSSTTCEECGGGC
T ss_pred             HHHHhhCCCHHHEEec------------------cCcHHHHHHHHHHHHHhCcCh---hhceEEEEecCCCceeEEeecc
Confidence            43 34455 7899976                  488999988999999999874   8999999999   999999999


Q ss_pred             -------HHHHHcCC-CHHHHHHHHH-hcCCCchhhHHHHhhch
Q psy9059         190 -------MRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGI  224 (269)
Q Consensus       190 -------~~lv~eGi-s~edID~a~~-g~G~p~GPf~~~D~~Gl  224 (269)
                             ..++++|+ +++++|.+++ +   ++|||+++|..|.
T Consensus       189 ~v~g~~~~~~~~~g~~~~~~id~~~~~~---~~~~~ei~~~~g~  229 (317)
T 2ewd_A          189 SVGGVPLSSFIKQGLITQEQIDEIVCHT---RIAWKEVADNLKT  229 (317)
T ss_dssp             EETTEEHHHHHHTTSSCHHHHHHHHHHH---HHHHHHHHHHHSS
T ss_pred             ccCCEEHHHHHhccCCCHHHHHHHHHHH---HhhHHHHHHhhcC
Confidence                   89999998 9999999987 5   7899999998776

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.54  E-value=9.6e-15  Score=148.62  Aligned_cols=118  Identities=19%  Similarity=0.231  Sum_probs=98.2

Q ss_pred             CCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHh
Q psy9059         148 TSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDE  221 (269)
Q Consensus       148 Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~  221 (269)
                      .++++.+...++....+..+-.+  ....|.+|++.+++|||+++++|||  +++|||.+|+ |+|||.   |||+++|.
T Consensus       611 ~~~~~~~~~~~~~~~~~~~~~~~--~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~  688 (742)
T 3zwc_A          611 PDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAAS  688 (742)
T ss_dssp             CCHHHHHHHHHHHHHHTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHH
T ss_pred             CChHHHHHHHHHhhhcCCCcCCC--CHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHH
Confidence            35666555555544333222222  1246899999999999999999998  8999999998 999997   99999999


Q ss_pred             hchHHHHHHHHHHHHHhCC--CCCCChhHHHHHHHHcCCCCCCCCCccCC
Q psy9059         222 VGIDVGAHIAKDLSKTFGD--RFSGGNLNVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       222 ~Gld~~~~~~~~l~~~~g~--~~~~~~~~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      +|++.+.+.|+.+.+.+|+  +|+  |+++|++|+++|....+.++|||.
T Consensus       689 ~G~~~~v~~l~~l~~~~g~~~~~~--P~~~L~~ma~~G~~~f~~~~~~~~  736 (742)
T 3zwc_A          689 VGLPTVLEKLQKYYRQNPDIPQLE--PSDYLRRLVAQGSPPLKEWQSLAG  736 (742)
T ss_dssp             HCHHHHHHHHHHHHHHCTTCGGGS--CCHHHHHHHHTTCCCGGGHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccC--CCHHHHHHHHcCCCcccccccccC
Confidence            9999999999999999996  787  689999999999999999999984

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.41  E-value=2.6e-13  Score=137.62  Aligned_cols=86  Identities=21%  Similarity=0.384  Sum_probs=79.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChh
Q psy9059         174 PGFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNL  247 (269)
Q Consensus       174 pGfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~  247 (269)
                      ++.|.+|++.+++|||+++++|||  +++|||.+|+ |+|||.   |||+++|.+|++.+.+.++.+ +.+|++|.  |+
T Consensus       624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~~~~--p~  700 (715)
T 1wdk_A          624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGALYH--PT  700 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCGGGC--CC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCCCCC--CC
Confidence            357999999999999999999998  9999999998 999998   999999999999999999999 88998888  67


Q ss_pred             HHHHHHHHcCCCCCCCCCccCC
Q psy9059         248 NVLNEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       248 ~lL~~lv~~G~lG~ksG~GFY~  269 (269)
                      ++|.+|+++|       ++||+
T Consensus       701 ~~l~~~~~~g-------~~f~~  715 (715)
T 1wdk_A          701 AKLREMAKNG-------QSFFG  715 (715)
T ss_dssp             HHHHHHHHTT-------CCSCC
T ss_pred             HHHHHHHHcC-------CCCCC
Confidence            9999999764       56884

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.41  E-value=4e-13  Score=136.44  Aligned_cols=81  Identities=27%  Similarity=0.358  Sum_probs=76.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhH
Q psy9059         175 GFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLN  248 (269)
Q Consensus       175 GfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~  248 (269)
                      +.|.+|++.+++|||+++++|||  +++|||.+|+ |+|||.   |||+++|.+|++.+.+.++.+.+.+|++|.  |++
T Consensus       625 ~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~~~~--p~~  702 (725)
T 2wtb_A          625 KDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGEFFK--PCA  702 (725)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCGGGC--CCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCCCCC--CCH
Confidence            57899999999999999999998  9999999998 999998   999999999999999999999999999888  679


Q ss_pred             HHHHHHHcC
Q psy9059         249 VLNEMVEKG  257 (269)
Q Consensus       249 lL~~lv~~G  257 (269)
                      +|.+|+++|
T Consensus       703 ~l~~~~~~g  711 (725)
T 2wtb_A          703 FLAERGSKG  711 (725)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            999999865

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.18  E-value=2.4e-11  Score=107.61  Aligned_cols=168  Identities=13%  Similarity=0.074  Sum_probs=121.5

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeecc
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYF  131 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~Hff  131 (269)
                      +++...+++|++.++|  +|+.++|++ . -  +++++++.+.+++++++.++|+++  +.+.+. ....+   -..|++
T Consensus        55 g~~~~~~~~~~~~~~D--vvi~av~~~-~-~--~~v~~~l~~~~~~~~ivv~~s~~~--~~~~l~~~~~~~---~~~~~~  123 (266)
T 3d1l_A           55 EAEYTTDLAEVNPYAK--LYIVSLKDS-A-F--AELLQGIVEGKREEALMVHTAGSI--PMNVWEGHVPHY---GVFYPM  123 (266)
T ss_dssp             TCEEESCGGGSCSCCS--EEEECCCHH-H-H--HHHHHHHHTTCCTTCEEEECCTTS--CGGGSTTTCSSE---EEEEEC
T ss_pred             CCceeCCHHHHhcCCC--EEEEecCHH-H-H--HHHHHHHHhhcCCCcEEEECCCCC--chHHHHHHHHhc---cCcCCc
Confidence            4567788999887655  999999997 2 3  678899999999999999999998  555543 23322   246888


Q ss_pred             CCC-----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc--Cch-----hHHHHH--HHHHHHHHHHHHcCC
Q psy9059         132 SPV-----DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG--PGF-----YTTRIL--STMLSEAMRILQEGT  197 (269)
Q Consensus       132 nP~-----~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~--pGf-----I~nRll--~al~~EA~~lv~eGi  197 (269)
                      +|.     ..++.++++- ..++++..+.+.++++.+|+.++.+.+.  +++     ++|++.  ...+.|++. .+.|+
T Consensus       124 ~~~~g~~~~~~~~~~~~v-~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl  201 (266)
T 3d1l_A          124 QTFSKQREVDFKEIPFFI-EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNL  201 (266)
T ss_dssp             CCC---CCCCCTTCCEEE-EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTC
T ss_pred             eecCCCchhhcCCCeEEE-ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCC
Confidence            762     2334444433 3578999999999999999999988543  456     788887  455566643 46899


Q ss_pred             CHHHH--------HHHHH-hc-CCCchhhHHHHhhchHHHHHHHHH
Q psy9059         198 SPKDL--------DRLTK-QF-GFPVGAATLSDEVGIDVGAHIAKD  233 (269)
Q Consensus       198 s~edI--------D~a~~-g~-G~p~GPf~~~D~~Gld~~~~~~~~  233 (269)
                      +++++        +.+++ |. +.++||+...|..|++.....++.
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~~~~~~~GP~~r~d~~~l~~~l~~l~~  247 (266)
T 3d1l_A          202 PFDVMLPLIDETARKVHELEPKTAQTGPAIRYDENVIGNHLRMLAD  247 (266)
T ss_dssp             CGGGGHHHHHHHHHHHHHSCHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHHhcChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence            88777        44444 43 556799999999999987666543

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.02  E-value=9.2e-11  Score=105.17  Aligned_cols=166  Identities=7%  Similarity=-0.005  Sum_probs=113.4

Q ss_pred             EecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEee----cc
Q psy9059          56 YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMH----YF  131 (269)
Q Consensus        56 ~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~H----ff  131 (269)
                      .+.+++|++.++|  +|+.|+|++.  +  .+++.+|.   .+++++.+.++++  |.+.++..    +..+.|    +.
T Consensus        48 ~~~~~~~~~~~~D--vVilav~~~~--~--~~v~~~l~---~~~~ivi~~s~~~--~~~~l~~~----~~~~~~p~~~~~  112 (276)
T 2i76_A           48 KAATLEKHPELNG--VVFVIVPDRY--I--KTVANHLN---LGDAVLVHCSGFL--SSEIFKKS----GRASIHPNFSFS  112 (276)
T ss_dssp             CCCSSCCCCC-----CEEECSCTTT--H--HHHHTTTC---CSSCCEEECCSSS--CGGGGCSS----SEEEEEECSCC-
T ss_pred             ccCCHHHHHhcCC--EEEEeCChHH--H--HHHHHHhc---cCCCEEEECCCCC--cHHHHHHh----hccccchhhhcC
Confidence            3456667776555  9999999954  6  78887775   6677777544444  55554332    566778    45


Q ss_pred             CCCCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc--C------chhHHHHHHHHHHHHHHHHH-cCC-CH-
Q psy9059         132 SPVDKMQ-LLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG--P------GFYTTRILSTMLSEAMRILQ-EGT-SP-  199 (269)
Q Consensus       132 nP~~~~~-lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~--p------GfI~nRll~al~~EA~~lv~-eGi-s~-  199 (269)
                      ||+.... +.++...-.++++..+.+..+++.+|+.++.+.+.  +      ++..| .+..+++++..+.. .|+ .. 
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n-~~~~~~~~a~~~~~~~Gl~~~~  191 (276)
T 2i76_A          113 SLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASN-FPVALAYLSKRIYTLLGLDEPE  191 (276)
T ss_dssp             -CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHT-THHHHHHHHHHHHHTTTCSCHH
T ss_pred             CCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCChHH
Confidence            6443221 33333333446677899999999999999888532  2      44444 66788899988876 799 66 


Q ss_pred             --------HHHHHHHH-h-cCCCchhhHHHHhhchHHHHHHHHHHHHH
Q psy9059         200 --------KDLDRLTK-Q-FGFPVGAATLSDEVGIDVGAHIAKDLSKT  237 (269)
Q Consensus       200 --------edID~a~~-g-~G~p~GPf~~~D~~Gld~~~~~~~~l~~~  237 (269)
                              ..+|.+++ | .+.++||++..|..+++...+.++.+.+.
T Consensus       192 a~~~~l~~~~~~~~~~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~~~  239 (276)
T 2i76_A          192 LLIHTLMKGVADNIKKMRVECSLTGPVKRGDWQVVEEERREYEKIFGN  239 (276)
T ss_dssp             HHHHHHHHHHHHHHHHSCGGGGCCSHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhcChHhhCCCCcccCCHHHHHHHHHHHhccCcc
Confidence                    68888887 7 66778999999999999998888876433

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.01  E-value=1.2e-09  Score=98.45  Aligned_cols=109  Identities=11%  Similarity=0.075  Sum_probs=92.4

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhc-CCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMY-TYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~-~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      +++.+.+..|++.++|  +|+.|||.  ..+  ++++++|.++ ++++++|.|+++++  +++.+ ..+.++.|++.+||
T Consensus        50 gi~~~~~~~~~~~~aD--vVilav~p--~~~--~~vl~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~~~~vvr~mP  121 (280)
T 3tri_A           50 GVHTTQDNRQGALNAD--VVVLAVKP--HQI--KMVCEELKDILSETKILVISLAVGV--TTPLIEKWLGKASRIVRAMP  121 (280)
T ss_dssp             CCEEESCHHHHHSSCS--EEEECSCG--GGH--HHHHHHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTCCSSEEEEEC
T ss_pred             CCEEeCChHHHHhcCC--eEEEEeCH--HHH--HHHHHHHHhhccCCCeEEEEecCCC--CHHHHHHHcCCCCeEEEEec
Confidence            5678889999998766  99999975  566  9999999999 99999999999998  56554 45666789999999


Q ss_pred             cCCCCCCcEEE-EeCCCCCCHHHHHHHHHHHHhCCcEEEE
Q psy9059         131 FSPVDKMQLLE-IITTEQTSQDTAASAVAVGLKQGKVVIT  169 (269)
Q Consensus       131 fnP~~~~~lVE-iv~~~~Ts~e~~~~~~~~~~~lGk~pv~  169 (269)
                      .+|......++ +++++.++++.++.+..+++.+|+.+.+
T Consensus       122 n~p~~v~~g~~~l~~~~~~~~~~~~~v~~l~~~iG~~~~v  161 (280)
T 3tri_A          122 NTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVIWV  161 (280)
T ss_dssp             CGGGGGTCEEEEEECCTTSCHHHHHHHHHHHGGGEEEEEC
T ss_pred             CChHHhcCccEEEEeCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence            99988877665 5689999999999999999999985543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.79  E-value=3.4e-08  Score=86.76  Aligned_cols=143  Identities=9%  Similarity=0.131  Sum_probs=105.9

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeecc
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYF  131 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hff  131 (269)
                      +++.+.+..|++.++|  +|+.|++  ....  ++++++|.+++++++++.|.++++  +++.+ .....+.+++.+||.
T Consensus        50 g~~~~~~~~e~~~~aD--vVilav~--~~~~--~~v~~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~~~~~v~~~p~  121 (247)
T 3gt0_A           50 GLTTTTDNNEVAKNAD--ILILSIK--PDLY--ASIINEIKEIIKNDAIIVTIAAGK--SIESTENAFNKKVKVVRVMPN  121 (247)
T ss_dssp             CCEECSCHHHHHHHCS--EEEECSC--TTTH--HHHC---CCSSCTTCEEEECSCCS--CHHHHHHHHCSCCEEEEEECC
T ss_pred             CCEEeCChHHHHHhCC--EEEEEeC--HHHH--HHHHHHHHhhcCCCCEEEEecCCC--CHHHHHHHhCCCCcEEEEeCC
Confidence            4677889999998766  9999995  4667  999999999999999999999998  55444 344556799999999


Q ss_pred             CCCCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHHH---------HHHHHHHHHH--HHHcCCCH
Q psy9059         132 SPVDKMQ-LLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTRI---------LSTMLSEAMR--ILQEGTSP  199 (269)
Q Consensus       132 nP~~~~~-lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nRl---------l~al~~EA~~--lv~eGis~  199 (269)
                      +|+.... .+++++++.++++.++.+..+++.+|+ ++.+.+.   ..+++         ....+.||+.  .++.|+++
T Consensus       122 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~~e~---~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~  197 (247)
T 3gt0_A          122 TPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQ-TEIVSEK---LMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPR  197 (247)
T ss_dssp             GGGGGTCEEEEEEECTTCCHHHHHHHHHHHGGGEE-EEECCGG---GHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             hHHHHcCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHH---HccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCH
Confidence            9998776 889999999999999999999999999 5555331   11211         1223445543  45678888


Q ss_pred             HHHHHHHH
Q psy9059         200 KDLDRLTK  207 (269)
Q Consensus       200 edID~a~~  207 (269)
                      ++.-.++.
T Consensus       198 ~~a~~~~~  205 (247)
T 3gt0_A          198 NQAYKFAA  205 (247)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766664

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.62  E-value=7.9e-08  Score=88.16  Aligned_cols=120  Identities=9%  Similarity=0.050  Sum_probs=92.1

Q ss_pred             EEecCHHH-HhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCC
Q psy9059          55 TYLYTYSE-RLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSP  133 (269)
Q Consensus        55 ~~~~~~~~-a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP  133 (269)
                      .++.+++| ++.++|  +|+.|||.+  ..  .++++++.+++++++||.+.+|.-..++..+... .|+|+++.||.++
T Consensus        82 ~~~~~~~~~~~~~aD--vVilavp~~--~~--~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~-l~~~~v~~hPm~G  154 (314)
T 3ggo_A           82 EGTTSIAKVEDFSPD--FVMLSSPVR--TF--REIAKKLSYILSEDATVTDQGSVKGKLVYDLENI-LGKRFVGGHPIAG  154 (314)
T ss_dssp             EEESCTTGGGGGCCS--EEEECSCGG--GH--HHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHH-HGGGEECEEECCC
T ss_pred             hhcCCHHHHhhccCC--EEEEeCCHH--HH--HHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHh-cCCCEEecCcccC
Confidence            46778888 887766  999999985  35  8899999999999999998887641123333211 1349999999887


Q ss_pred             CCC------------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE-eccCchhHHHH
Q psy9059         134 VDK------------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV-KDGPGFYTTRI  181 (269)
Q Consensus       134 ~~~------------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v-kd~pGfI~nRl  181 (269)
                      +..            ...+.+++++.++++.++.+.++++.+|+.++.+ .+....+...+
T Consensus       155 ~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~~~hD~~~a~~  215 (314)
T 3ggo_A          155 TEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSPELHDYVFGVV  215 (314)
T ss_dssp             CCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHH
T ss_pred             CcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence            542            4689999999999999999999999999999988 44444444444

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.25  E-value=6e-07  Score=86.96  Aligned_cols=145  Identities=7%  Similarity=0.054  Sum_probs=106.7

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCC--------CcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc--c-c----
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQE--------QIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ--E-Q----  116 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE--------~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~--~-~----  116 (269)
                      +++++++++++++.++|  +|+.|||.        |+...  ++++++|.++++++++| .+.|+.  |+.  + +    
T Consensus        70 ~~l~~ttd~~~a~~~aD--vviiaVptp~~~~~~~dl~~v--~~v~~~i~~~l~~~~iV-V~~STv--~~gt~~~l~~~l  142 (478)
T 2y0c_A           70 GRLRFSTDIEAAVAHGD--VQFIAVGTPPDEDGSADLQYV--LAAARNIGRYMTGFKVI-VDKSTV--PVGTAERVRAAV  142 (478)
T ss_dssp             TCEEEECCHHHHHHHCS--EEEECCCCCBCTTSSBCCHHH--HHHHHHHHHHCCSCEEE-EECSCC--CTTHHHHHHHHH
T ss_pred             CCEEEECCHHHHhhcCC--EEEEEeCCCcccCCCccHHHH--HHHHHHHHHhcCCCCEE-EEeCCc--CCCchHHHHHHH
Confidence            68999999999998777  99999998        44555  99999999999999988 456676  331  1 1    


Q ss_pred             CC-CCCC---CeEEEeeccCCCCCCcEE---------EEeCCCCCCH----HHHHHHHHHHHhCCc--EEEEEe-----c
Q psy9059         117 IP-IQTP---HLIIGMHYFSPVDKMQLL---------EIITTEQTSQ----DTAASAVAVGLKQGK--VVITVK-----D  172 (269)
Q Consensus       117 ~~-~~~p---~R~i~~HffnP~~~~~lV---------Eiv~~~~Ts~----e~~~~~~~~~~~lGk--~pv~vk-----d  172 (269)
                      .. +..+   .++  .+.++|..+.+-.         .|+.|.. ++    ++.+.+.++++.+++  .++.+.     +
T Consensus       143 ~~~~~~g~~~~~~--~v~~~Pe~~~eG~~~~~~~~p~~iviG~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae  219 (478)
T 2y0c_A          143 AEELAKRGGDQMF--SVVSNPEFLKEGAAVDDFTRPDRIVIGCD-DDVPGERARELMKKLYAPFNRNHERTLYMDVRSAE  219 (478)
T ss_dssp             HHHHHHTTCCCCE--EEEECCCCCCTTCHHHHHHSCSCEEEECC-SSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHH
T ss_pred             HHHhcCCCCCccE--EEEEChhhhcccceeeccCCCCEEEEEEC-CCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHH
Confidence            11 1112   233  3578888877655         4666653 44    788899999988765  566665     3


Q ss_pred             cCchhHHHHH---HHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059         173 GPGFYTTRIL---STMLSEAMRILQ-EGTSPKDLDRLT  206 (269)
Q Consensus       173 ~pGfI~nRll---~al~~EA~~lv~-eGis~edID~a~  206 (269)
                      ...++.|.++   .+++||+..+.+ .|++++++..++
T Consensus       220 ~~Kl~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~i  257 (478)
T 2y0c_A          220 FTKYAANAMLATRISFMNELANLADRFGADIEAVRRGI  257 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4568888887   678999999886 577999998877

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.21  E-value=3.1e-06  Score=74.94  Aligned_cols=125  Identities=9%  Similarity=0.060  Sum_probs=93.7

Q ss_pred             HhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccCCCCCCcEEE
Q psy9059          63 RLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFSPVDKMQLLE  141 (269)
Q Consensus        63 a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~HffnP~~~~~lVE  141 (269)
                      ++.+  ||  +-|+|.+  .=  .+++++|.+++++++|+...+++.  +.+.++ ...+..++++.||...     ...
T Consensus        40 ~~~~--aD--ilavP~~--ai--~~vl~~l~~~l~~g~ivvd~sgs~--~~~vl~~~~~~g~~fvg~HPm~g-----~~~  104 (232)
T 3dfu_A           40 DIRD--FE--LVVIDAH--GV--EGYVEKLSAFARRGQMFLHTSLTH--GITVMDPLETSGGIVMSAHPIGQ-----DRW  104 (232)
T ss_dssp             GGGG--CS--EEEECSS--CH--HHHHHHHHTTCCTTCEEEECCSSC--CGGGGHHHHHTTCEEEEEEEEET-----TEE
T ss_pred             Hhcc--CC--EEEEcHH--HH--HHHHHHHHHhcCCCCEEEEECCcC--HHHHHHHHHhCCCcEEEeeeCCC-----Cce
Confidence            3544  55  7789986  33  678899999999999988755444  343332 2345679999998632     123


Q ss_pred             EeCCCCCCHHHHHHHHHHHHhCCcEEEEE--eccCch----hHHHHHHHHHHHHHHHH---HcCC-CHHH--HHH
Q psy9059         142 IITTEQTSQDTAASAVAVGLKQGKVVITV--KDGPGF----YTTRILSTMLSEAMRIL---QEGT-SPKD--LDR  204 (269)
Q Consensus       142 iv~~~~Ts~e~~~~~~~~~~~lGk~pv~v--kd~pGf----I~nRll~al~~EA~~lv---~eGi-s~ed--ID~  204 (269)
                      ++.+  .+++.++.+..+.+.+|+.++.+  .+.++|    .....+.++.++|.+++   ++|+ +++|  +|.
T Consensus       105 ~i~a--~d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d~~~~~  177 (232)
T 3dfu_A          105 VASA--LDELGETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSDIVMDS  177 (232)
T ss_dssp             EEEE--SSHHHHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             eeeC--CCHHHHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhhhhhc
Confidence            3333  27889999999999999999998  556777    67888999999999999   8999 9999  553

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.17  E-value=1.4e-06  Score=79.32  Aligned_cols=144  Identities=12%  Similarity=0.065  Sum_probs=94.5

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCCC-C--CCeEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPIQ-T--PHLII  126 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~~-~--p~R~i  126 (269)
                      +++++.|++|++.++|  +|+.|||....    .+++.+|.++++++++|...||..  |.+.  + .... +  .-+++
T Consensus        70 g~~~~~~~~e~~~~aD--vVi~~vp~~~~----~~~~~~l~~~l~~~~ivvd~st~~--~~~~~~~~~~~~~~~~g~~~v  141 (312)
T 3qsg_A           70 GVSCKASVAEVAGECD--VIFSLVTAQAA----LEVAQQAGPHLCEGALYADFTSCS--PAVKRAIGDVISRHRPSAQYA  141 (312)
T ss_dssp             TCEECSCHHHHHHHCS--EEEECSCTTTH----HHHHHHHGGGCCTTCEEEECCCCC--HHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCEEeCCHHHHHhcCC--EEEEecCchhH----HHHHHhhHhhcCCCCEEEEcCCCC--HHHHHHHHHHHHhhcCCCeEE
Confidence            5778899999998776  99999999654    346789999998998888776654  3222  1 1111 1  12333


Q ss_pred             EeeccCCC--CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch-----hHHHHHH----HHHHHHHHHHH-
Q psy9059         127 GMHYFSPV--DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF-----YTTRILS----TMLSEAMRILQ-  194 (269)
Q Consensus       127 ~~HffnP~--~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf-----I~nRll~----al~~EA~~lv~-  194 (269)
                      ..-.+.|+  ..-.++.++.++.+     +++..+++.+|+.++++.+.+|-     ++|-++.    ++++|++.+.+ 
T Consensus       142 d~pv~g~~~~~~g~l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~  216 (312)
T 3qsg_A          142 AVAVMSAVKPHGHRVPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEK  216 (312)
T ss_dssp             EEEECSCSTTTGGGSEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eccccCCchhhcCCEEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22112221  11267888888765     78889999999999888654553     3333333    77799998765 


Q ss_pred             cCCCHHHHHHHHHhc
Q psy9059         195 EGTSPKDLDRLTKQF  209 (269)
Q Consensus       195 eGis~edID~a~~g~  209 (269)
                      .|++++-++.+..+.
T Consensus       217 ~Gld~~~~~~l~~~~  231 (312)
T 3qsg_A          217 MGLADRVLASLDASF  231 (312)
T ss_dssp             TTCHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHhcC
Confidence            688776666433344

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.15  E-value=5.2e-06  Score=74.12  Aligned_cols=105  Identities=12%  Similarity=0.034  Sum_probs=79.8

Q ss_pred             CHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCCCC---
Q psy9059          59 TYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVD---  135 (269)
Q Consensus        59 ~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~---  135 (269)
                      +..+++.++|  +|+.|+|.+.  -  .+++++|.+.++++++|.+.+++.  |.+.+.......++++.||.+|..   
T Consensus        60 ~~~~~~~~aD--vVi~av~~~~--~--~~v~~~l~~~l~~~~ivv~~s~~~--~~~~l~~~~~~~~~v~~~P~~~~~~~~  131 (286)
T 3c24_A           60 DGDGWIDEAD--VVVLALPDNI--I--EKVAEDIVPRVRPGTIVLILDAAA--PYAGVMPERADITYFIGHPCHPPLFND  131 (286)
T ss_dssp             CSSGGGGTCS--EEEECSCHHH--H--HHHHHHHGGGSCTTCEEEESCSHH--HHHTCSCCCTTSEEEEEEECCSCSSCC
T ss_pred             CHHHHhcCCC--EEEEcCCchH--H--HHHHHHHHHhCCCCCEEEECCCCc--hhHHHHhhhCCCeEEecCCCCcccccc
Confidence            6677887666  9999999865  5  789999999999999999866665  555544333336899999998866   


Q ss_pred             -----CCc--------EEEEeCCCCCCHHHHHHHHHHHHhCCc---EEEEEe
Q psy9059         136 -----KMQ--------LLEIITTEQTSQDTAASAVAVGLKQGK---VVITVK  171 (269)
Q Consensus       136 -----~~~--------lVEiv~~~~Ts~e~~~~~~~~~~~lGk---~pv~vk  171 (269)
                           ...        ...++.+..++++..+.+.++++.+|+   .++.+.
T Consensus       132 ~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~  183 (286)
T 3c24_A          132 ETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVT  183 (286)
T ss_dssp             CCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred             ccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeC
Confidence                 222        244544445788999999999999999   888884

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.13  E-value=2.6e-06  Score=76.14  Aligned_cols=148  Identities=11%  Similarity=0.045  Sum_probs=99.5

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCCcEEecCCCCCcccccc--c-CCC-CCCCeEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPI-QTPHLII  126 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~-~~p~R~i  126 (269)
                      ++++++|++|++.++|  +|+.|+|+...++  .-++  +++.+.+++++++...|+..  |.+.  + ... .+.-+++
T Consensus        44 g~~~~~~~~~~~~~aD--vvi~~vp~~~~~~--~v~~~~~~l~~~l~~~~~vi~~st~~--~~~~~~~~~~~~~~g~~~~  117 (287)
T 3pef_A           44 GAERAATPCEVVESCP--VTFAMLADPAAAE--EVCFGKHGVLEGIGEGRGYVDMSTVD--PATSQRIGVAVVAKGGRFL  117 (287)
T ss_dssp             TCEECSSHHHHHHHCS--EEEECCSSHHHHH--HHHHSTTCHHHHCCTTCEEEECSCCC--HHHHHHHHHHHHHTTCEEE
T ss_pred             CCeecCCHHHHHhcCC--EEEEEcCCHHHHH--HHHcCcchHhhcCCCCCEEEeCCCCC--HHHHHHHHHHHHHhCCEEE
Confidence            5788999999998876  9999999877776  5555  77888888887776554432  3221  2 111 1223444


Q ss_pred             EeeccCCCC----CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc------hhHHHHH---HHHHHHHHHHH
Q psy9059         127 GMHYFSPVD----KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG------FYTTRIL---STMLSEAMRIL  193 (269)
Q Consensus       127 ~~HffnP~~----~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG------fI~nRll---~al~~EA~~lv  193 (269)
                      . ||.....    .-.++.++.+   ++++++++..+++.+|+.++.+.+ +|      ++.|-+.   .+.++|++.+.
T Consensus       118 ~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~  192 (287)
T 3pef_A          118 E-APVSGSKKPAEDGTLIILAAG---DRNLYDEAMPGFEKMGKKIIHLGD-VGKGAEMKLVVNMVMGGMMACFCEGLALG  192 (287)
T ss_dssp             E-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             E-CCCcCCHHHHhcCCEEEEEeC---CHHHHHHHHHHHHHhCCCeEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 5432211    1135556654   688999999999999999998854 44      2333332   33789999887


Q ss_pred             H-cCCCHHHHHHHHH-hcCC
Q psy9059         194 Q-EGTSPKDLDRLTK-QFGF  211 (269)
Q Consensus       194 ~-eGis~edID~a~~-g~G~  211 (269)
                      + .|++++++..++. +.+.
T Consensus       193 ~~~G~d~~~~~~~~~~~~~~  212 (287)
T 3pef_A          193 EKAGLATDAILDVIGAGAMA  212 (287)
T ss_dssp             HHTTCCHHHHHHHHHHSTTC
T ss_pred             HHcCCCHHHHHHHHHhcccc
Confidence            6 5779999999986 6554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.08  E-value=1.2e-05  Score=72.46  Aligned_cols=144  Identities=10%  Similarity=0.107  Sum_probs=98.4

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc-c-c-CCC-CCCCeEEE
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ-E-Q-IPI-QTPHLIIG  127 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~-~-~-~~~-~~p~R~i~  127 (269)
                      .++++++|++|++. +|  +|+.++|+...++   +++.++.+.+++++++...|++.  |.+ + + ..+ .+.-+++.
T Consensus        57 ~g~~~~~~~~~~~~-aD--vvi~~vp~~~~~~---~v~~~l~~~l~~g~ivv~~st~~--~~~~~~~~~~~~~~g~~~~~  128 (296)
T 3qha_A           57 AGATLADSVADVAA-AD--LIHITVLDDAQVR---EVVGELAGHAKPGTVIAIHSTIS--DTTAVELARDLKARDIHIVD  128 (296)
T ss_dssp             TTCEECSSHHHHTT-SS--EEEECCSSHHHHH---HHHHHHHTTCCTTCEEEECSCCC--HHHHHHHHHHHGGGTCEEEE
T ss_pred             CCCEEcCCHHHHHh-CC--EEEEECCChHHHH---HHHHHHHHhcCCCCEEEEeCCCC--HHHHHHHHHHHHHcCCEEEe
Confidence            35789999999997 66  9999999876666   45588888888777766544433  322 1 2 112 12233443


Q ss_pred             eeccCCCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc------hhHHHHHH---HHHHHHHHHHH-
Q psy9059         128 MHYFSPVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG------FYTTRILS---TMLSEAMRILQ-  194 (269)
Q Consensus       128 ~HffnP~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG------fI~nRll~---al~~EA~~lv~-  194 (269)
                      ...+.++.   .-.++.++.+   ++++++++..+++.+|+.++.+.+ +|      ++.|.+..   +.++|++.+.+ 
T Consensus       129 ~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~  204 (296)
T 3qha_A          129 APVSGGAAAAARGELATMVGA---DREVYERIKPAFKHWAAVVIHAGE-PGAGTRMKLARNMLTFTSYAAACEAMKLAEA  204 (296)
T ss_dssp             CCEESCHHHHHHTCEEEEEEC---CHHHHHHHHHHHHHHEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHhcCCccEEecC---CHHHHHHHHHHHHHHcCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222221   2346677766   689999999999999999998865 55      55565553   45799998876 


Q ss_pred             cCCCHHHH------HHHHH
Q psy9059         195 EGTSPKDL------DRLTK  207 (269)
Q Consensus       195 eGis~edI------D~a~~  207 (269)
                      .|++++++      ..++.
T Consensus       205 ~G~d~~~~~~~~~~~~~i~  223 (296)
T 3qha_A          205 AGLDLQALGRVVRHTDALT  223 (296)
T ss_dssp             TTCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHhhhcchHHHHh
Confidence            57799999      88875

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.99  E-value=4.8e-06  Score=80.06  Aligned_cols=151  Identities=8%  Similarity=0.053  Sum_probs=103.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCc-----------hhHHHHHHHhcCCCCcEEecCCCCCcccccc-c-CC
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQT-----------PQQMSERIYMYTYSERLMGSNGLAMVFPLQE-Q-IP  118 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~-----------k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~-~~  118 (269)
                      ++++++++++|++.++|  +|+.|||...+.+.           =.+..++|.++++++++| .++|+.+.-.++ + ..
T Consensus        68 ~~~~~t~~~~e~~~~aD--vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iV-V~~STv~~g~~~~l~~~  144 (467)
T 2q3e_A           68 KNLFFSTNIDDAIKEAD--LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIV-TEKSTVPVRAAESIRRI  144 (467)
T ss_dssp             TTEEEESCHHHHHHHCS--EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEE-EECSCCCTTHHHHHHHH
T ss_pred             CCEEEECCHHHHHhcCC--EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEE-EECCcCCchHHHHHHHH
Confidence            57899999999998766  99999998776651           136778899888888877 444444111111 1 11


Q ss_pred             C--CCC--CeEEEeeccCCCCCCcEEE---------E-eCCCC--CCHHHHHHHHHHHHhC-CcEEEEEec-----cCch
Q psy9059         119 I--QTP--HLIIGMHYFSPVDKMQLLE---------I-ITTEQ--TSQDTAASAVAVGLKQ-GKVVITVKD-----GPGF  176 (269)
Q Consensus       119 ~--~~p--~R~i~~HffnP~~~~~lVE---------i-v~~~~--Ts~e~~~~~~~~~~~l-Gk~pv~vkd-----~pGf  176 (269)
                      +  ...  ..+-+  .++|....+-..         | +.++.  +++++.+.+.++++.+ |+.++.+.+     ...+
T Consensus       145 l~~~~~~~~d~~V--~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl  222 (467)
T 2q3e_A          145 FDANTKPNLNLQV--LSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKL  222 (467)
T ss_dssp             HHHTCCTTCEEEE--EECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHH
T ss_pred             HHHhCCCCCCeEE--EeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHH
Confidence            1  111  12222  367776655443         3 45544  4788999999999998 777777753     3567


Q ss_pred             hHHHHH---HHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy9059         177 YTTRIL---STMLSEAMRILQ-EGTSPKDLDRLTK  207 (269)
Q Consensus       177 I~nRll---~al~~EA~~lv~-eGis~edID~a~~  207 (269)
                      +.|.+.   .+++||+..+.+ .|+++++++.++.
T Consensus       223 ~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~  257 (467)
T 2q3e_A          223 AANAFLAQRISSINSISALCEATGADVEEVATAIG  257 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            888864   688899999887 5779999999885

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.99  E-value=4.8e-06  Score=75.59  Aligned_cols=148  Identities=11%  Similarity=0.004  Sum_probs=99.4

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCCcEEecCCCCCccccc-c-c-CCC-CCCCeEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSERLMGSNGLAMVFPLQ-E-Q-IPI-QTPHLII  126 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~~iiaSnTS~l~~p~~-~-~-~~~-~~p~R~i  126 (269)
                      ++++++|++|++.++|  +|+.++|+...++  .-++  ++|.+.++++++|...|+.-  |.+ . + ..+ .+.-+++
T Consensus        64 g~~~~~~~~~~~~~aD--vvi~~vp~~~~~~--~v~~~~~~l~~~l~~g~~vv~~st~~--~~~~~~~~~~~~~~g~~~v  137 (310)
T 3doj_A           64 GASVCESPAEVIKKCK--YTIAMLSDPCAAL--SVVFDKGGVLEQICEGKGYIDMSTVD--AETSLKINEAITGKGGRFV  137 (310)
T ss_dssp             TCEECSSHHHHHHHCS--EEEECCSSHHHHH--HHHHSTTCGGGGCCTTCEEEECSCCC--HHHHHHHHHHHHHTTCEEE
T ss_pred             CCeEcCCHHHHHHhCC--EEEEEcCCHHHHH--HHHhCchhhhhccCCCCEEEECCCCC--HHHHHHHHHHHHHcCCEEE
Confidence            4688899999998776  9999999876666  5444  66777777777665544332  322 1 2 111 1222343


Q ss_pred             EeeccCCC----CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc------hhHHHHH---HHHHHHHHHHH
Q psy9059         127 GMHYFSPV----DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG------FYTTRIL---STMLSEAMRIL  193 (269)
Q Consensus       127 ~~HffnP~----~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG------fI~nRll---~al~~EA~~lv  193 (269)
                      . ||....    ..-+++-++.+   ++++++++..+++.+|+.++.+.+ +|      ++.|.+.   .+.++|++.+.
T Consensus       138 ~-~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~  212 (310)
T 3doj_A          138 E-GPVSGSKKPAEDGQLIILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLA  212 (310)
T ss_dssp             E-CCEECCHHHHHHTCEEEEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             e-CCCCCChhHHhcCCeEEEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 432210    11235566655   588999999999999999998865 55      5666665   45679999987


Q ss_pred             H-cCCCHHHHHHHHH-hcCC
Q psy9059         194 Q-EGTSPKDLDRLTK-QFGF  211 (269)
Q Consensus       194 ~-eGis~edID~a~~-g~G~  211 (269)
                      + .|++++++..++. +.+.
T Consensus       213 ~~~G~d~~~~~~~~~~~~~~  232 (310)
T 3doj_A          213 DKSGLSSDTLLDILDLGAMT  232 (310)
T ss_dssp             HHTTSCHHHHHHHHHHSTTC
T ss_pred             HHcCCCHHHHHHHHHhcccc
Confidence            6 5779999999986 6554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.94  E-value=4.6e-05  Score=69.46  Aligned_cols=109  Identities=10%  Similarity=0.045  Sum_probs=83.4

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCC---CCCeEEEe
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQ---TPHLIIGM  128 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~---~p~R~i~~  128 (269)
                      +++++.+..|++.++|  +|+.|||-  ...  .+++.+|...++++++|.|.++++  +...++ .+.   ...+++..
T Consensus        71 G~~~~~~~~e~~~~aD--vVilav~~--~~~--~~vl~~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~~~~~~~vv~~  142 (322)
T 2izz_A           71 GVKLTPHNKETVQHSD--VLFLAVKP--HII--PFILDEIGADIEDRHIVVSCAAGV--TISSIEKKLSAFRPAPRVIRC  142 (322)
T ss_dssp             TCEEESCHHHHHHHCS--EEEECSCG--GGH--HHHHHHHGGGCCTTCEEEECCTTC--CHHHHHHHHHTTSSCCEEEEE
T ss_pred             CCEEeCChHHHhccCC--EEEEEeCH--HHH--HHHHHHHHhhcCCCCEEEEeCCCC--CHHHHHHHHhhcCCCCeEEEE
Confidence            4677788999997766  99999983  455  889999999999999999887776  444321 111   14589999


Q ss_pred             eccCCCCCCcEEEEe-CCCCCCHHHHHHHHHHHHhCCcEEEE
Q psy9059         129 HYFSPVDKMQLLEII-TTEQTSQDTAASAVAVGLKQGKVVIT  169 (269)
Q Consensus       129 HffnP~~~~~lVEiv-~~~~Ts~e~~~~~~~~~~~lGk~pv~  169 (269)
                      |+..|.....-..++ .++.++++..+.+..+++.+|+.+.+
T Consensus       143 ~p~~p~~~~~g~~v~~~g~~~~~~~~~~v~~ll~~~G~~~~~  184 (322)
T 2izz_A          143 MTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCTEV  184 (322)
T ss_dssp             ECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEEEEC
T ss_pred             eCCcHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCCEEEe
Confidence            998887765544555 67778899999999999999986543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.92  E-value=3.7e-06  Score=75.95  Aligned_cols=149  Identities=9%  Similarity=0.028  Sum_probs=100.0

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHH--HHhcCCCCcEEecCCCCCccccccc-CCC-CCCCeEEEe
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSER--IYMYTYSERLMGSNGLAMVFPLQEQ-IPI-QTPHLIIGM  128 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~--l~~~~~~~~iiaSnTS~l~~p~~~~-~~~-~~p~R~i~~  128 (269)
                      +++...++.|++.++|  +|+.|+|+...++  .-+.+.  +.+.+.++++|.+-+++.......+ +.+ .++.+++..
T Consensus        73 g~~~~~~~~~~~~~~D--vVi~av~~~~~~~--~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~  148 (316)
T 2uyy_A           73 GARLGRTPAEVVSTCD--ITFACVSDPKAAK--DLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEA  148 (316)
T ss_dssp             TCEECSCHHHHHHHCS--EEEECCSSHHHHH--HHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEcCCHHHHHhcCC--EEEEeCCCHHHHH--HHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence            3566778999997766  9999999866665  433321  2245566665543222220022222 222 246688888


Q ss_pred             eccCCC---CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc------hhHHHH---HHHHHHHHHHHHH-c
Q psy9059         129 HYFSPV---DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG------FYTTRI---LSTMLSEAMRILQ-E  195 (269)
Q Consensus       129 HffnP~---~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG------fI~nRl---l~al~~EA~~lv~-e  195 (269)
                      ++++.+   ....+++++.+   +++..+.+.++++.+|+.++.+.+ +|      .+.|.+   ..++++|++.+.+ .
T Consensus       149 p~~g~~~~~~~g~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~-~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~  224 (316)
T 2uyy_A          149 PVSGNQQLSNDGMLVILAAG---DRGLYEDCSSCFQAMGKTSFFLGE-VGNAAKMMLIVNMVQGSFMATIAEGLTLAQVT  224 (316)
T ss_dssp             CEESCHHHHHHTCEEEEEEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCChhHHhhCCEEEEeCC---CHHHHHHHHHHHHHhcCCEEEeCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            877543   33457778776   578899999999999998887754 23      467776   5788999998865 6


Q ss_pred             CCCHHHHHHHHH-hc
Q psy9059         196 GTSPKDLDRLTK-QF  209 (269)
Q Consensus       196 Gis~edID~a~~-g~  209 (269)
                      |+++++++.++. +.
T Consensus       225 G~~~~~~~~~~~~~~  239 (316)
T 2uyy_A          225 GQSQQTLLDILNQGQ  239 (316)
T ss_dssp             TCCHHHHHHHHHHST
T ss_pred             CCCHHHHHHHHHcCC
Confidence            889999998886 53

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.91  E-value=1e-05  Score=72.26  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=96.4

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCCcEEecCCCCCccccc-c-c-CCC-CCCCeEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSERLMGSNGLAMVFPLQ-E-Q-IPI-QTPHLII  126 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~~iiaSnTS~l~~p~~-~-~-~~~-~~p~R~i  126 (269)
                      ++++++|++|++.++|  +|+.++|+...++  .-++  +++.+.+++++++...|++-  |.+ . + ... .+.-+++
T Consensus        44 g~~~~~~~~~~~~~ad--vvi~~v~~~~~~~--~v~~~~~~l~~~l~~g~~vv~~st~~--~~~~~~~~~~~~~~g~~~~  117 (287)
T 3pdu_A           44 GARQASSPAEVCAACD--ITIAMLADPAAAR--EVCFGANGVLEGIGGGRGYIDMSTVD--DETSTAIGAAVTARGGRFL  117 (287)
T ss_dssp             TCEECSCHHHHHHHCS--EEEECCSSHHHHH--HHHHSTTCGGGTCCTTCEEEECSCCC--HHHHHHHHHHHHHTTCEEE
T ss_pred             CCeecCCHHHHHHcCC--EEEEEcCCHHHHH--HHHcCchhhhhcccCCCEEEECCCCC--HHHHHHHHHHHHHcCCEEE
Confidence            5688899999998876  9999999976666  5444  66777777766665443332  322 1 2 111 2223444


Q ss_pred             EeeccCCCCC---CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc------hhHHHHH---HHHHHHHHHHHH
Q psy9059         127 GMHYFSPVDK---MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG------FYTTRIL---STMLSEAMRILQ  194 (269)
Q Consensus       127 ~~HffnP~~~---~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG------fI~nRll---~al~~EA~~lv~  194 (269)
                      ....+.++..   -.++-++.+   ++++++++..+++.+|+.++.+.+ +|      ++.|.+.   .+.++|++.+.+
T Consensus       118 ~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~  193 (287)
T 3pdu_A          118 EAPVSGTKKPAEDGTLIILAAG---DQSLFTDAGPAFAALGKKCLHLGE-VGQGARMKLVVNMIMGQMMTALGEGMALGR  193 (287)
T ss_dssp             ECCEECCHHHHHHTCEEEEEEE---CHHHHHHTHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCccCCHHHHhcCCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322222210   123444443   689999999999999999998854 44      2345443   456799998876


Q ss_pred             -cCCCHHHHHHHHH-hcCC
Q psy9059         195 -EGTSPKDLDRLTK-QFGF  211 (269)
Q Consensus       195 -eGis~edID~a~~-g~G~  211 (269)
                       .|++++++..++. +.+.
T Consensus       194 ~~G~~~~~~~~~~~~~~~~  212 (287)
T 3pdu_A          194 NCGLDGGQLLEVLDAGAMA  212 (287)
T ss_dssp             HTTCCHHHHHHHHHHSTTC
T ss_pred             HcCCCHHHHHHHHHhcccc
Confidence             5779999999987 6554

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.91  E-value=1.1e-05  Score=72.82  Aligned_cols=147  Identities=12%  Similarity=0.037  Sum_probs=97.1

Q ss_pred             EEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCCcEEecCCCCCccccc--cc-CCC-CCCCeEEEe
Q psy9059          55 TYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSERLMGSNGLAMVFPLQ--EQ-IPI-QTPHLIIGM  128 (269)
Q Consensus        55 ~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~~iiaSnTS~l~~p~~--~~-~~~-~~p~R~i~~  128 (269)
                      .++.|++|++.++|  +|+.++|+...++  .-++  ++|.+.++++++|...|+..  |.+  .+ ... .+.-+++. 
T Consensus        53 ~~~~~~~e~~~~aD--vvi~~vp~~~~~~--~v~~~~~~l~~~l~~g~ivv~~st~~--~~~~~~~~~~~~~~g~~~~~-  125 (303)
T 3g0o_A           53 GAAASAREFAGVVD--ALVILVVNAAQVR--QVLFGEDGVAHLMKPGSAVMVSSTIS--SADAQEIAAALTALNLNMLD-  125 (303)
T ss_dssp             EEESSSTTTTTTCS--EEEECCSSHHHHH--HHHC--CCCGGGSCTTCEEEECSCCC--HHHHHHHHHHHHTTTCEEEE-
T ss_pred             cccCCHHHHHhcCC--EEEEECCCHHHHH--HHHhChhhHHhhCCCCCEEEecCCCC--HHHHHHHHHHHHHcCCeEEe-
Confidence            34889999997766  9999999976666  5444  66777788887776444432  322  12 112 22234444 


Q ss_pred             eccC-CCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc------hhHHHH---HHHHHHHHHHHHH-
Q psy9059         129 HYFS-PVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG------FYTTRI---LSTMLSEAMRILQ-  194 (269)
Q Consensus       129 Hffn-P~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG------fI~nRl---l~al~~EA~~lv~-  194 (269)
                      ||.. .+.   .-.++.++.+   ++++++++..+++.+|+.++.+.+.+|      ++.|.+   ..+.++|++.+.+ 
T Consensus       126 ~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~  202 (303)
T 3g0o_A          126 APVSGGAVKAAQGEMTVMASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAAR  202 (303)
T ss_dssp             CCEESCHHHHHTTCEEEEEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChhhhhcCCeEEEeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5432 110   1134556554   689999999999999999998876455      244444   3456899998876 


Q ss_pred             cCCCHHHHHHHHH-hcCC
Q psy9059         195 EGTSPKDLDRLTK-QFGF  211 (269)
Q Consensus       195 eGis~edID~a~~-g~G~  211 (269)
                      .|++++++..++. +.+.
T Consensus       203 ~G~d~~~~~~~~~~~~~~  220 (303)
T 3g0o_A          203 AGIPLDVMYDVVTHAAGN  220 (303)
T ss_dssp             TTCCHHHHHHHHTTSTTC
T ss_pred             cCCCHHHHHHHHHhcccC
Confidence            5779999999986 6554

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.85  E-value=2.6e-05  Score=71.06  Aligned_cols=149  Identities=9%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH-HHHhcCCCC-cEEecCCCCCcccccc-c-CCC-CCCCeEEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE-RIYMYTYSE-RLMGSNGLAMVFPLQE-Q-IPI-QTPHLIIG  127 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~-~l~~~~~~~-~iiaSnTS~l~~p~~~-~-~~~-~~p~R~i~  127 (269)
                      +++++.|++|++.++|  +|+.++|+...++  .-++. ++.+.++++ .||.+||+..  ..++ + ..+ .+.-+++.
T Consensus        74 g~~~~~~~~e~~~~aD--vVi~~vp~~~~~~--~v~~~~~~~~~l~~~~~vi~~st~~~--~~~~~~~~~~~~~g~~~~~  147 (320)
T 4dll_A           74 GATIHEQARAAARDAD--IVVSMLENGAVVQ--DVLFAQGVAAAMKPGSLFLDMASITP--REARDHAARLGALGIAHLD  147 (320)
T ss_dssp             TCEEESSHHHHHTTCS--EEEECCSSHHHHH--HHHTTTCHHHHCCTTCEEEECSCCCH--HHHHHHHHHHHHTTCEEEE
T ss_pred             CCEeeCCHHHHHhcCC--EEEEECCCHHHHH--HHHcchhHHhhCCCCCEEEecCCCCH--HHHHHHHHHHHHcCCEEEe
Confidence            5788999999998776  9999999877766  54442 444455555 4555555432  2222 2 111 12223433


Q ss_pred             eeccCCC---CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec-cCc----hhHHHHH---HHHHHHHHHHHH-c
Q psy9059         128 MHYFSPV---DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD-GPG----FYTTRIL---STMLSEAMRILQ-E  195 (269)
Q Consensus       128 ~HffnP~---~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd-~pG----fI~nRll---~al~~EA~~lv~-e  195 (269)
                      ...+.++   ..-++..++.+   ++++++++..+++.+ +.++.+.+ ..|    ++.|-+.   .+.++|++.+.+ .
T Consensus       148 ~pv~g~~~~a~~g~l~i~~gg---~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~  223 (320)
T 4dll_A          148 TPVSGGTVGAEQGTLVIMAGG---KPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKG  223 (320)
T ss_dssp             CCEECHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCCHhHHhcCCeeEEeCC---CHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2111111   11245666665   689999999999999 88888854 223    3444433   346899998876 5


Q ss_pred             CCCHHHHHHHHH-hcCC
Q psy9059         196 GTSPKDLDRLTK-QFGF  211 (269)
Q Consensus       196 Gis~edID~a~~-g~G~  211 (269)
                      |++++++..++. +.|.
T Consensus       224 G~d~~~~~~~~~~~~~~  240 (320)
T 4dll_A          224 GADMAKVKEAITGGFAD  240 (320)
T ss_dssp             SCCHHHHHHHHTTSTTC
T ss_pred             CCCHHHHHHHHHccccc
Confidence            789999999986 6543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.80  E-value=5.1e-05  Score=66.35  Aligned_cols=138  Identities=12%  Similarity=0.106  Sum_probs=90.3

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeecc
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYF  131 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hff  131 (269)
                      ++++..++.|++ ++|  +|+.|+|  ....  ++++.++.+  + +++|.|.+|++  +...+ +.+..+.+++.. +.
T Consensus        45 g~~~~~~~~~~~-~~D--~vi~~v~--~~~~--~~v~~~l~~--~-~~ivv~~~~g~--~~~~l~~~~~~~~~~v~~-~~  111 (263)
T 1yqg_A           45 GVETSATLPELH-SDD--VLILAVK--PQDM--EAACKNIRT--N-GALVLSVAAGL--SVGTLSRYLGGTRRIVRV-MP  111 (263)
T ss_dssp             CCEEESSCCCCC-TTS--EEEECSC--HHHH--HHHHTTCCC--T-TCEEEECCTTC--CHHHHHHHTTSCCCEEEE-EC
T ss_pred             CCEEeCCHHHHh-cCC--EEEEEeC--chhH--HHHHHHhcc--C-CCEEEEecCCC--CHHHHHHHcCCCCcEEEE-cC
Confidence            356667788887 655  9999999  3334  566666655  5 89999998988  44444 334444588888 44


Q ss_pred             C-CCCCC-cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe-cc--------CchhHHHHHHHHH---HHHHHHHHcCC
Q psy9059         132 S-PVDKM-QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK-DG--------PGFYTTRILSTML---SEAMRILQEGT  197 (269)
Q Consensus       132 n-P~~~~-~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk-d~--------pGfI~nRll~al~---~EA~~lv~eGi  197 (269)
                      | |.... ....++.+..++++.++.+.++++.+|+.+ .+. +.        .| ..+..+..++   .|+  ....|+
T Consensus       112 ~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g-~~~~~~~~~~~~l~e~--~~~~G~  187 (263)
T 1yqg_A          112 NTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV-WLDDEEKMHGITGISG-SGPAYVFYLLDALQNA--AIRQGF  187 (263)
T ss_dssp             CGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTT-SHHHHHHHHHHHHHHH--HHHTTC
T ss_pred             CHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEE-EeCChhhccHHHHHHc-cHHHHHHHHHHHHHHH--HHHcCC
Confidence            5 43332 366788888899999999999999999876 555 41        11 1111222222   333  456788


Q ss_pred             CHHHHHHHHH
Q psy9059         198 SPKDLDRLTK  207 (269)
Q Consensus       198 s~edID~a~~  207 (269)
                      +++++...+.
T Consensus       188 ~~~~~~~~~~  197 (263)
T 1yqg_A          188 DMAEARALSL  197 (263)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            8877776653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.79  E-value=1.4e-05  Score=71.04  Aligned_cols=146  Identities=12%  Similarity=0.089  Sum_probs=95.0

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      +++...+++|++.++|  +|+.++|...+++  .-+.+  ++.+.++++++|.+.+++.......+ ..+..  +  +.|
T Consensus        45 g~~~~~~~~~~~~~~D--~vi~~vp~~~~~~--~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~--~--g~~  116 (295)
T 1yb4_A           45 GAVNVETARQVTEFAD--IIFIMVPDTPQVE--DVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNE--M--GAD  116 (295)
T ss_dssp             TCBCCSSHHHHHHTCS--EEEECCSSHHHHH--HHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHT--T--TEE
T ss_pred             CCcccCCHHHHHhcCC--EEEEECCCHHHHH--HHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHH--c--CCe
Confidence            3566789999997766  9999999876665  43332  67777888888876655531112222 22221  1  344


Q ss_pred             ccCCCCC--------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec-cCc----hhHHH---HHHHHHHHHHHHH
Q psy9059         130 YFSPVDK--------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD-GPG----FYTTR---ILSTMLSEAMRIL  193 (269)
Q Consensus       130 ffnP~~~--------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd-~pG----fI~nR---ll~al~~EA~~lv  193 (269)
                      +.+.|-.        -.++.++.+   +++..+++..+++.+|+.++.+.+ ..|    ++.|.   +....++|++.+.
T Consensus       117 ~~~~p~~~~~~~a~~g~~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~  193 (295)
T 1yb4_A          117 YLDAPVSGGEIGAREGTLSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFA  193 (295)
T ss_dssp             EEECCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCHHHHHcCCeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433221        134555554   788999999999999999888854 233    23343   3346889998877


Q ss_pred             H-cCCCHHHHHHHHH-hc
Q psy9059         194 Q-EGTSPKDLDRLTK-QF  209 (269)
Q Consensus       194 ~-eGis~edID~a~~-g~  209 (269)
                      + .|+++++++.++. +.
T Consensus       194 ~~~G~~~~~~~~~~~~~~  211 (295)
T 1yb4_A          194 SKAGADPVRVRQALMGGF  211 (295)
T ss_dssp             HHTTCCHHHHHHHHTSSS
T ss_pred             HHcCCCHHHHHHHHHcCC
Confidence            5 5789999998886 54

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.70  E-value=2.7e-05  Score=69.45  Aligned_cols=145  Identities=14%  Similarity=0.058  Sum_probs=96.7

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCCcEEecCCCCCcccc--ccc-CCCC-CCCeEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSERLMGSNGLAMVFPL--QEQ-IPIQ-TPHLII  126 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~~iiaSnTS~l~~p~--~~~-~~~~-~p~R~i  126 (269)
                      +++...+++|++.++|  +|+.++|....++  .-+.  .+|.+.++++++|.+.+++.  |.  ..+ +.+. +.-+++
T Consensus        47 g~~~~~~~~~~~~~~D--~vi~~vp~~~~~~--~v~~~~~~l~~~l~~~~~vv~~~~~~--~~~~~~l~~~~~~~g~~~~  120 (301)
T 3cky_A           47 GAQACENNQKVAAASD--IIFTSLPNAGIVE--TVMNGPGGVLSACKAGTVIVDMSSVS--PSSTLKMAKVAAEKGIDYV  120 (301)
T ss_dssp             TCEECSSHHHHHHHCS--EEEECCSSHHHHH--HHHHSTTCHHHHSCTTCEEEECCCCC--HHHHHHHHHHHHHTTCEEE
T ss_pred             CCeecCCHHHHHhCCC--EEEEECCCHHHHH--HHHcCcchHhhcCCCCCEEEECCCCC--HHHHHHHHHHHHHcCCeEE
Confidence            4567789999997766  9999999877666  5554  37778889999998887775  32  222 2222 122444


Q ss_pred             EeeccCCCC----CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec-cCchh----HHHH---HHHHHHHHHHHHH
Q psy9059         127 GMHYFSPVD----KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD-GPGFY----TTRI---LSTMLSEAMRILQ  194 (269)
Q Consensus       127 ~~HffnP~~----~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd-~pGfI----~nRl---l~al~~EA~~lv~  194 (269)
                      . ++..+..    .-.+..++.+   +++.++.+.++++.+|+.++.+.+ ..|..    .|.+   +...++|++.+.+
T Consensus       121 ~-~p~~~~~~~a~~g~~~~~~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~  196 (301)
T 3cky_A          121 D-APVSGGTKGAEAGTLTIMVGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGV  196 (301)
T ss_dssp             E-CCEESHHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             E-ccCCCCHHHHHcCCeEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 2221110    0113444544   788999999999999999887743 34433    4554   5568999988765


Q ss_pred             -cCCCHHHHHHHHH
Q psy9059         195 -EGTSPKDLDRLTK  207 (269)
Q Consensus       195 -eGis~edID~a~~  207 (269)
                       .|+++++++.++.
T Consensus       197 ~~G~~~~~~~~~~~  210 (301)
T 3cky_A          197 KCGLKPETMQEIIG  210 (301)
T ss_dssp             HTTCCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHH
Confidence             6889999988876

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.69  E-value=0.00019  Score=62.72  Aligned_cols=139  Identities=9%  Similarity=0.110  Sum_probs=89.9

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFS  132 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hffn  132 (269)
                      ++...++.|++.++|  +|+.++|.  ...  .+++.++    .+++++.+.++++  +.+.+ +...+..+++..|+..
T Consensus        48 ~~~~~~~~~~~~~~D--~Vi~~v~~--~~~--~~v~~~l----~~~~~vv~~~~~~--~~~~l~~~~~~~~~~v~~~p~~  115 (259)
T 2ahr_A           48 LPYAMSHQDLIDQVD--LVILGIKP--QLF--ETVLKPL----HFKQPIISMAAGI--SLQRLATFVGQDLPLLRIMPNM  115 (259)
T ss_dssp             CCBCSSHHHHHHTCS--EEEECSCG--GGH--HHHHTTS----CCCSCEEECCTTC--CHHHHHHHHCTTSCEEEEECCG
T ss_pred             CEeeCCHHHHHhcCC--EEEEEeCc--HhH--HHHHHHh----ccCCEEEEeCCCC--CHHHHHHhcCCCCCEEEEcCCc
Confidence            445678999997666  99999994  333  5555543    3677888888777  44443 2233445788888877


Q ss_pred             CCCCCc-EEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccC--ch-----hHHHHHHHHHHHHH--HHHHcCCCHHHH
Q psy9059         133 PVDKMQ-LLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGP--GF-----YTTRILSTMLSEAM--RILQEGTSPKDL  202 (269)
Q Consensus       133 P~~~~~-lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~p--Gf-----I~nRll~al~~EA~--~lv~eGis~edI  202 (269)
                      |..... ...++.+..++++..+.+.++++.+| .++.+.+..  ..     -.+.....+. +++  .+...|++++++
T Consensus       116 ~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~-~~la~~~~~~Gl~~~~~  193 (259)
T 2ahr_A          116 NAQILQSSTALTGNALVSQELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFI-EALAKAGVKNGIPKAKA  193 (259)
T ss_dssp             GGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHH-HHHHHHHHHTTCCHHHH
T ss_pred             hHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHH-HHHHHHHHHcCCCHHHH
Confidence            766543 67788888899999999999999999 466664321  00     0111222222 332  255678877766


Q ss_pred             HHHH
Q psy9059         203 DRLT  206 (269)
Q Consensus       203 D~a~  206 (269)
                      -.++
T Consensus       194 ~~~~  197 (259)
T 2ahr_A          194 LEIV  197 (259)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.67  E-value=6.5e-05  Score=71.39  Aligned_cols=147  Identities=10%  Similarity=-0.014  Sum_probs=97.3

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcC---------CCchhHHHHHHHhcCCC---CcEEecCCCCCcccc-cc-c
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIP---------IQTPQQMSERIYMYTYS---ERLMGSNGLAMVFPL-QE-Q  116 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~---------~K~k~~l~~~l~~~~~~---~~iiaSnTS~l~~p~-~~-~  116 (269)
                      .|++++++++++++.++|  +|+.|||...+         ++   +++++|.+++++   +++|.. +|+...-. .+ +
T Consensus        61 ~g~l~~t~~~~~~~~~aD--vviiaVptp~~~~~~~dl~~v~---~v~~~i~~~l~~~~~~~iVV~-~Stv~~g~t~~~l  134 (436)
T 1mv8_A           61 TGRLSGTTDFKKAVLDSD--VSFICVGTPSKKNGDLDLGYIE---TVCREIGFAIREKSERHTVVV-RSTVLPGTVNNVV  134 (436)
T ss_dssp             TTCEEEESCHHHHHHTCS--EEEECCCCCBCTTSSBCCHHHH---HHHHHHHHHHTTCCSCCEEEE-CSCCCTTHHHHTH
T ss_pred             cCceEEeCCHHHHhccCC--EEEEEcCCCcccCCCcchHHHH---HHHHHHHHHhcccCCCcEEEE-eCCcCCCchHHHH
Confidence            367999999999998766  99999998775         44   567899988888   777753 33331111 11 1


Q ss_pred             C-CCCC--CC----eEEEeeccCCCCCCcEE---------EEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-----Cc
Q psy9059         117 I-PIQT--PH----LIIGMHYFSPVDKMQLL---------EIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-----PG  175 (269)
Q Consensus       117 ~-~~~~--p~----R~i~~HffnP~~~~~lV---------Eiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-----pG  175 (269)
                      . .+..  ..    .+.+  .++|..+.+-.         .++.|. ++++..+.+.++++.+|+ ++.+.+.     ..
T Consensus       135 ~~~l~~~~g~~~~~~~~v--~~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~-~v~~~~~~~ae~~K  210 (436)
T 1mv8_A          135 IPLIEDCSGKKAGVDFGV--GTNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDA-PIIRKTVEVAEMIK  210 (436)
T ss_dssp             HHHHHHHHSCCBTTTBEE--EECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSS-CEEEEEHHHHHHHH
T ss_pred             HHHHHHhcCcccCCcEEE--EECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCC-CEEcCCHHHHHHHH
Confidence            1 1110  11    1111  24666554432         345444 478999999999999998 5555432     34


Q ss_pred             hhHHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHH
Q psy9059         176 FYTTRIL---STMLSEAMRILQE-GTSPKDLDRLTK  207 (269)
Q Consensus       176 fI~nRll---~al~~EA~~lv~e-Gis~edID~a~~  207 (269)
                      ++.|.+.   .+++||+..+.+. |+++++++.++.
T Consensus       211 l~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~  246 (436)
T 1mv8_A          211 YTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVIC  246 (436)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence            5666654   6889999988864 779999999874

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.66  E-value=3.9e-05  Score=68.25  Aligned_cols=111  Identities=6%  Similarity=0.024  Sum_probs=82.1

Q ss_pred             EEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhc-CCCCcEEecCCCCCccccccc-CCCCC-CCeEEEeecc
Q psy9059          55 TYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMY-TYSERLMGSNGLAMVFPLQEQ-IPIQT-PHLIIGMHYF  131 (269)
Q Consensus        55 ~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~-~~~~~iiaSnTS~l~~p~~~~-~~~~~-p~R~i~~Hff  131 (269)
                      ..+.+++|++.++|  +|+.|+|...  -  ++++.++.++ ++++++|.+.+|+.......+ ..+.. ..|+++.||.
T Consensus        55 ~~~~~~~~~~~~aD--vVilavp~~~--~--~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~  128 (290)
T 3b1f_A           55 EATADFKVFAALAD--VIILAVPIKK--T--IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPM  128 (290)
T ss_dssp             EEESCTTTTGGGCS--EEEECSCHHH--H--HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC
T ss_pred             cccCCHHHhhcCCC--EEEEcCCHHH--H--HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCc
Confidence            45678888887666  9999999853  2  5788889888 888998886544321012222 22232 6799999998


Q ss_pred             ------CCCC------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy9059         132 ------SPVD------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK  171 (269)
Q Consensus       132 ------nP~~------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk  171 (269)
                            .|..      ....+.++++..++++..+.+.++++.+|+.++.+.
T Consensus       129 ~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~  180 (290)
T 3b1f_A          129 AGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEID  180 (290)
T ss_dssp             -----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECC
T ss_pred             CCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence                  5653      235688999888999999999999999999888774

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.61  E-value=3.5e-05  Score=71.63  Aligned_cols=111  Identities=8%  Similarity=0.020  Sum_probs=80.2

Q ss_pred             EEecCHHHHhcCC--CCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccC
Q psy9059          55 TYLYTYSERLMGS--NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFS  132 (269)
Q Consensus        55 ~~~~~~~~a~~~~--~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~Hffn  132 (269)
                      ..+.+++|++.++  ++|+|+.|+|-  +..  .+++++|..+ ++++||...+|.-..++..+.......|+++.||..
T Consensus        53 ~~~~~~~e~~~~a~~~aDlVilavP~--~~~--~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~HPma  127 (341)
T 3ktd_A           53 DVSADLEATLQRAAAEDALIVLAVPM--TAI--DSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNMQHRYVGSHPMA  127 (341)
T ss_dssp             CEESCHHHHHHHHHHTTCEEEECSCH--HHH--HHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTCGGGEECEEECC
T ss_pred             eeeCCHHHHHHhcccCCCEEEEeCCH--HHH--HHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCCCCcEecCCccc
Confidence            4567888888653  45699999994  456  8999999987 888988655443211233332221247999999976


Q ss_pred             CCCC------------CcEEEEeCCCCCCHH--------HHHHHHHHHHhCCcEEEEE
Q psy9059         133 PVDK------------MQLLEIITTEQTSQD--------TAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       133 P~~~------------~~lVEiv~~~~Ts~e--------~~~~~~~~~~~lGk~pv~v  170 (269)
                      .+..            ...+-+++++.++++        .++.+..+++.+|+.++.+
T Consensus       128 G~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~  185 (341)
T 3ktd_A          128 GTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPS  185 (341)
T ss_dssp             SCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred             cccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEe
Confidence            5531            124558999999988        9999999999999999988

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.60  E-value=0.00065  Score=59.16  Aligned_cols=107  Identities=12%  Similarity=0.062  Sum_probs=76.5

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEE---E
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLII---G  127 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i---~  127 (269)
                      -+++...+.+|++.++|  +|+.|+|.  ...  ++++.++.+++ ++.+|.|.++++  +.+.+ .......+++   .
T Consensus        44 ~g~~~~~~~~~~~~~~D--~vi~~v~~--~~~--~~v~~~l~~~l-~~~~vv~~~~gi--~~~~l~~~~~~~~~~v~~~p  114 (262)
T 2rcy_A           44 TTLNYMSSNEELARHCD--IIVCAVKP--DIA--GSVLNNIKPYL-SSKLLISICGGL--NIGKLEEMVGSENKIVWVMP  114 (262)
T ss_dssp             SSSEECSCHHHHHHHCS--EEEECSCT--TTH--HHHHHHSGGGC-TTCEEEECCSSC--CHHHHHHHHCTTSEEEEEEC
T ss_pred             CceEEeCCHHHHHhcCC--EEEEEeCH--HHH--HHHHHHHHHhc-CCCEEEEECCCC--CHHHHHHHhCCCCcEEEECC
Confidence            35777889999997766  99999996  456  89999999888 677888888887  44433 2223322433   2


Q ss_pred             eeccCCCCCC-cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy9059         128 MHYFSPVDKM-QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK  171 (269)
Q Consensus       128 ~HffnP~~~~-~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk  171 (269)
                      .|+.   ... .+.-+++++.++++.++.+..+++.+|+ ++.+.
T Consensus       115 ~~p~---~~~~g~~~~~~~~~~~~~~~~~~~~ll~~~G~-~~~~~  155 (262)
T 2rcy_A          115 NTPC---LVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGI-IHEIK  155 (262)
T ss_dssp             CGGG---GGTCEEEEEEECTTCCHHHHHHHHHHHHTSEE-EEECC
T ss_pred             ChHH---HHcCCeEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence            3332   222 2444667888899999999999999997 77774

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.55  E-value=9e-05  Score=65.94  Aligned_cols=148  Identities=11%  Similarity=0.103  Sum_probs=94.3

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHH--HHHHhcCCCCcEEecCCCCCcccc--ccc-CCCC-CCCeEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMS--ERIYMYTYSERLMGSNGLAMVFPL--QEQ-IPIQ-TPHLII  126 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~--~~l~~~~~~~~iiaSnTS~l~~p~--~~~-~~~~-~p~R~i  126 (269)
                      +++...+++|++.++|  +|+.++|....++  .-++  .+|.+.+++++++.+-+++.  |.  ..+ +.+. +.-+++
T Consensus        48 g~~~~~~~~~~~~~~D--~vi~~v~~~~~~~--~~~~~~~~l~~~l~~~~~vv~~s~~~--~~~~~~l~~~~~~~g~~~~  121 (299)
T 1vpd_A           48 GAETASTAKAIAEQCD--VIITMLPNSPHVK--EVALGENGIIEGAKPGTVLIDMSSIA--PLASREISDALKAKGVEML  121 (299)
T ss_dssp             TCEECSSHHHHHHHCS--EEEECCSSHHHHH--HHHHSTTCHHHHCCTTCEEEECSCCC--HHHHHHHHHHHHTTTCEEE
T ss_pred             CCeecCCHHHHHhCCC--EEEEECCCHHHHH--HHHhCcchHhhcCCCCCEEEECCCCC--HHHHHHHHHHHHHcCCeEE
Confidence            4677889999997766  9999999866666  5444  57778888898887655554  32  222 2221 122333


Q ss_pred             Eeecc--CCCC-CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec-cCchh---HHHHH----HHHHHHHHHHHH-
Q psy9059         127 GMHYF--SPVD-KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD-GPGFY---TTRIL----STMLSEAMRILQ-  194 (269)
Q Consensus       127 ~~Hff--nP~~-~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd-~pGfI---~nRll----~al~~EA~~lv~-  194 (269)
                      .. +.  +|+. ...-+.++.+.  +++..+.+..+++.+|+.++.+.+ ..|..   ++..+    ...++|++.+.+ 
T Consensus       122 ~~-pv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~  198 (299)
T 1vpd_A          122 DA-PVSGGEPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATK  198 (299)
T ss_dssp             EC-CEESHHHHHHHTCEEEEEES--CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Ee-cCCCCHhHHhcCCEEEEeCC--CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 11  1110 01113444443  789999999999999999988843 44443   13333    368899988754 


Q ss_pred             cCCCHHHHHHHHH-hc
Q psy9059         195 EGTSPKDLDRLTK-QF  209 (269)
Q Consensus       195 eGis~edID~a~~-g~  209 (269)
                      .|+++++++.++. +.
T Consensus       199 ~G~~~~~~~~~~~~~~  214 (299)
T 1vpd_A          199 AGVNPDLVYQAIRGGL  214 (299)
T ss_dssp             TTCCHHHHHHHHTTST
T ss_pred             cCCCHHHHHHHHHccC
Confidence            6889999998875 54

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.55  E-value=0.00016  Score=63.70  Aligned_cols=117  Identities=11%  Similarity=-0.060  Sum_probs=82.3

Q ss_pred             EEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcc-cccccCCCCCCCeEEEeeccCC
Q psy9059          55 TYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVF-PLQEQIPIQTPHLIIGMHYFSP  133 (269)
Q Consensus        55 ~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~-p~~~~~~~~~p~R~i~~HffnP  133 (269)
                      ....+++++ .++|  +|+.|+|..  ..  .+++.++.++++++++|.+- |+.+. ....+..  ...|++..||...
T Consensus        47 ~~~~~~~~~-~~~D--~vi~av~~~--~~--~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~--~~~~~~~~~p~~g  116 (279)
T 2f1k_A           47 EAGQDLSLL-QTAK--IIFLCTPIQ--LI--LPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQ--LWSGFIGGHPMAG  116 (279)
T ss_dssp             EEESCGGGG-TTCS--EEEECSCHH--HH--HHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHH--HSTTCEEEEECCC
T ss_pred             cccCCHHHh-CCCC--EEEEECCHH--HH--HHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHH--HhCCEeecCcccC
Confidence            356678887 6655  999999974  45  78999999999999988664 44411 1111211  1228999998762


Q ss_pred             CC------------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec-cCchhHHHH
Q psy9059         134 VD------------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD-GPGFYTTRI  181 (269)
Q Consensus       134 ~~------------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd-~pGfI~nRl  181 (269)
                      ..            ..+.+.+++++.++++..+.+.++++.+|..++.+.+ ..+.+...+
T Consensus       117 ~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~~~~  177 (279)
T 2f1k_A          117 TAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLCTPADHDQAVAWI  177 (279)
T ss_dssp             CSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEECCHHHHHHHHHHH
T ss_pred             CccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHHHHHHHH
Confidence            21            2247889998889999999999999999999888843 334444444

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.53  E-value=0.00021  Score=65.80  Aligned_cols=137  Identities=9%  Similarity=0.119  Sum_probs=90.7

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH-HHHhcCCCCcEEecCCCCCcccccccCCCCCC--CeEEEeec
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE-RIYMYTYSERLMGSNGLAMVFPLQEQIPIQTP--HLIIGMHY  130 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~-~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p--~R~i~~Hf  130 (269)
                      ++.. +++|++.++|  +|+.|+|...  -  .+++. +|.++++++++|.+. +|+  .. .......|  -++++.||
T Consensus        61 ~~~~-~~~e~~~~aD--vVilavp~~~--~--~~v~~~~i~~~l~~~~ivi~~-~gv--~~-~~~~~~~~~~~~vv~~~P  129 (338)
T 1np3_A           61 LKVA-DVKTAVAAAD--VVMILTPDEF--Q--GRLYKEEIEPNLKKGATLAFA-HGF--SI-HYNQVVPRADLDVIMIAP  129 (338)
T ss_dssp             CEEE-CHHHHHHTCS--EEEECSCHHH--H--HHHHHHHTGGGCCTTCEEEES-CCH--HH-HTTSSCCCTTCEEEEEEE
T ss_pred             CEEc-cHHHHHhcCC--EEEEeCCcHH--H--HHHHHHHHHhhCCCCCEEEEc-CCc--hh-HHHhhcCCCCcEEEeccC
Confidence            4555 8999998766  9999999854  3  67887 898899999999876 445  33 32223233  35999999


Q ss_pred             cCCCCC----------CcEEEEeCCCCCCHHHHHHHHHHHHhCCc-E--EEEEe-----ccCchhHHHH----HHHHHHH
Q psy9059         131 FSPVDK----------MQLLEIITTEQTSQDTAASAVAVGLKQGK-V--VITVK-----DGPGFYTTRI----LSTMLSE  188 (269)
Q Consensus       131 fnP~~~----------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk-~--pv~vk-----d~pGfI~nRl----l~al~~E  188 (269)
                      ..|...          .+.+ ++++..++++..+.+.++++.+|. .  ++.+.     +...++.++.    +..++..
T Consensus       130 ~gp~~a~~~l~~~G~g~~~i-i~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~  208 (338)
T 1np3_A          130 KAPGHTVRSEFVKGGGIPDL-IAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKA  208 (338)
T ss_dssp             SSCSHHHHHHHHTTCCCCEE-EEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred             CCCchhHHHHHhccCCCeEE-EEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHH
Confidence            777642          2222 667777888999999999999998 3  55542     1234432222    3444444


Q ss_pred             HH-HHHHcCCCHHHH
Q psy9059         189 AM-RILQEGTSPKDL  202 (269)
Q Consensus       189 A~-~lv~eGis~edI  202 (269)
                      ++ .+++.|+++++.
T Consensus       209 ~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          209 GFETLVEAGYAPEMA  223 (338)
T ss_dssp             HHHHHHHTTCCHHHH
T ss_pred             HHHHHHHcCCCHHHH
Confidence            44 446788876543

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.50  E-value=7.9e-05  Score=62.99  Aligned_cols=110  Identities=6%  Similarity=0.025  Sum_probs=76.3

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcc-------c-----cccc-CC
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVF-------P-----LQEQ-IP  118 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~-------p-----~~~~-~~  118 (269)
                      +.+++ .++.+++.++|  +|+.++|...  -  ++++.++.+.++ ++++.+.+++++.       +     .+++ +.
T Consensus        51 ~~~~~-~~~~~~~~~~D--~Vi~~~~~~~--~--~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~  122 (212)
T 1jay_A           51 ASITG-MKNEDAAEACD--IAVLTIPWEH--A--IDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEV  122 (212)
T ss_dssp             CCEEE-EEHHHHHHHCS--EEEECSCHHH--H--HHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHH
T ss_pred             CCCCh-hhHHHHHhcCC--EEEEeCChhh--H--HHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHh
Confidence            34553 68999997766  9999999643  4  578888877775 8999999988731       0     2233 22


Q ss_pred             CCCCCeEEEeeccCCCCCC-------cEEEEeCCCCCCHHHHHHHHHHHHhC-CcEEEEEec
Q psy9059         119 IQTPHLIIGMHYFSPVDKM-------QLLEIITTEQTSQDTAASAVAVGLKQ-GKVVITVKD  172 (269)
Q Consensus       119 ~~~p~R~i~~HffnP~~~~-------~lVEiv~~~~Ts~e~~~~~~~~~~~l-Gk~pv~vkd  172 (269)
                      .. ..+++..|+..|....       .+..++.++  +++..+.+.++++.+ |+.++.+.+
T Consensus       123 ~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~  181 (212)
T 1jay_A          123 LE-SEKVVSALHTIPAARFANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP  181 (212)
T ss_dssp             HT-CSCEEECCTTCCHHHHHCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred             CC-CCeEEEEccchHHHHhhCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence            32 3677766543332221       256677776  689999999999999 999998865

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.50  E-value=3.7e-05  Score=70.92  Aligned_cols=72  Identities=15%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeec--CCCcCC---------------CchhHHHHHHHhcCCCCcEE--ecCCCCCcc
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPL--QEQIPI---------------QTPQQMSERIYMYTYSERLM--GSNGLAMVF  111 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--pE~l~~---------------K~k~~l~~~l~~~~~~~~ii--aSnTS~l~~  111 (269)
                      ..+++++.+++++++++|  +|++++  |++...               +.+++++++|++++ |++++  +||++++  
T Consensus        63 ~~~i~~t~d~~ea~~~aD--iVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~--  137 (331)
T 1pzg_A           63 NVSVRAEYSYEAALTGAD--CVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDC--  137 (331)
T ss_dssp             CCCEEEECSHHHHHTTCS--EEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHH--
T ss_pred             CCEEEEeCCHHHHhCCCC--EEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHH--
Confidence            468999999999998877  999999  877665               22399999999998 77776  8999986  


Q ss_pred             ccccc--CCCC-CCCeEEEe
Q psy9059         112 PLQEQ--IPIQ-TPHLIIGM  128 (269)
Q Consensus       112 p~~~~--~~~~-~p~R~i~~  128 (269)
                       ++.+  .... .|+|++|+
T Consensus       138 -~t~~~~~~~~~~~~rviG~  156 (331)
T 1pzg_A          138 -MVKVMCEASGVPTNMICGM  156 (331)
T ss_dssp             -HHHHHHHHHCCCGGGEEEC
T ss_pred             -HHHHHHHhcCCChhcEEec
Confidence             2342  2222 67899888

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.47  E-value=0.0002  Score=63.28  Aligned_cols=108  Identities=8%  Similarity=0.031  Sum_probs=78.2

Q ss_pred             EecCHHHHhc-CCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC-CCCCCCeEEEeeccCC
Q psy9059          56 YLYTYSERLM-GSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI-PIQTPHLIIGMHYFSP  133 (269)
Q Consensus        56 ~~~~~~~a~~-~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~-~~~~p~R~i~~HffnP  133 (269)
                      ...++++++. ++|  +|+.|+|..  .-  .+++.++.++++++++|...+++-......+. ..  +++++..||...
T Consensus        51 ~~~~~~~~~~~~aD--vVilavp~~--~~--~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l--~~~~v~~~p~~~  122 (281)
T 2g5c_A           51 GTTSIAKVEDFSPD--FVMLSSPVR--TF--REIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAG  122 (281)
T ss_dssp             EESCGGGGGGTCCS--EEEECSCHH--HH--HHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECC
T ss_pred             ccCCHHHHhcCCCC--EEEEcCCHH--HH--HHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhc--cccceeeccccC
Confidence            4567888887 666  999999985  23  57888888888999888764443200112221 12  224888899764


Q ss_pred             CC------------CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy9059         134 VD------------KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK  171 (269)
Q Consensus       134 ~~------------~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk  171 (269)
                      +.            ....+.++++..++++..+.+.++++.+|+.++.+.
T Consensus       123 ~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~  172 (281)
T 2g5c_A          123 TEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMS  172 (281)
T ss_dssp             CSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            32            345688999988999999999999999999988874

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.46  E-value=1.5e-05  Score=73.35  Aligned_cols=70  Identities=17%  Similarity=0.185  Sum_probs=52.9

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeec--CC------------CcCCCchhHHHHHHHhcCCCCcEE--ecCCCCCccccc
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPL--QE------------QIPIQTPQQMSERIYMYTYSERLM--GSNGLAMVFPLQ  114 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--pE------------~l~~K~k~~l~~~l~~~~~~~~ii--aSnTS~l~~p~~  114 (269)
                      ..+++++.++ +|+++||  +|++++  |+            +.++|  ++++++|+++| |++++  +||++..   ++
T Consensus        68 ~~~i~~t~d~-~al~~aD--~VI~avg~p~k~g~tr~dl~~~n~~i~--~~i~~~i~~~~-p~a~viv~tNP~~~---~t  138 (328)
T 2hjr_A           68 PAKIFGENNY-EYLQNSD--VVIITAGVPRKPNMTRSDLLTVNAKIV--GSVAENVGKYC-PNAFVICITNPLDA---MV  138 (328)
T ss_dssp             CCCEEEESCG-GGGTTCS--EEEECCSCCCCTTCCSGGGHHHHHHHH--HHHHHHHHHHC-TTCEEEECCSSHHH---HH
T ss_pred             CCEEEECCCH-HHHCCCC--EEEEcCCCCCCCCCchhhHHhhhHHHH--HHHHHHHHHHC-CCeEEEEecCchHH---HH
Confidence            4689998898 8997776  999999  77            33446  99999999998 66765  8999876   23


Q ss_pred             cc-CCCC--CCCeEEEee
Q psy9059         115 EQ-IPIQ--TPHLIIGMH  129 (269)
Q Consensus       115 ~~-~~~~--~p~R~i~~H  129 (269)
                      .+ ....  +|+|++|+-
T Consensus       139 ~~~~~~~~~~~~rviG~~  156 (328)
T 2hjr_A          139 YYFKEKSGIPANKVCGMS  156 (328)
T ss_dssp             HHHHHHHCCCGGGEEESC
T ss_pred             HHHHHhcCCChhhEEEeC
Confidence            42 2222  678888873

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.46  E-value=7.4e-05  Score=67.61  Aligned_cols=147  Identities=11%  Similarity=-0.041  Sum_probs=95.1

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHH--HHHhcCCCCcEEecCCCCCcccccc-c-CCC-CCCCeEEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSE--RIYMYTYSERLMGSNGLAMVFPLQE-Q-IPI-QTPHLIIG  127 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~--~l~~~~~~~~iiaSnTS~l~~p~~~-~-~~~-~~p~R~i~  127 (269)
                      +++...|++|++.++|  +|+.++|....++  . ++.  .+....+...+|-+||+..  .... + ... .+.-+++.
T Consensus        52 g~~~~~~~~e~~~~aD--vVi~~vp~~~~~~--~-v~~~~~l~~~~~g~ivid~st~~~--~~~~~l~~~~~~~g~~~vd  124 (306)
T 3l6d_A           52 GAHLCESVKAALSASP--ATIFVLLDNHATH--E-VLGMPGVARALAHRTIVDYTTNAQ--DEGLALQGLVNQAGGHYVK  124 (306)
T ss_dssp             TCEECSSHHHHHHHSS--EEEECCSSHHHHH--H-HHTSTTHHHHTTTCEEEECCCCCT--THHHHHHHHHHHTTCEEEE
T ss_pred             CCeecCCHHHHHhcCC--EEEEEeCCHHHHH--H-HhcccchhhccCCCEEEECCCCCH--HHHHHHHHHHHHcCCeEEe
Confidence            4577889999998876  9999999876665  4 334  5666555555665555543  1222 2 111 22345665


Q ss_pred             eeccCCC-C--CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE--ec--cCchhHHHHH---HHHHHHHHHHHH-cC
Q psy9059         128 MHYFSPV-D--KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV--KD--GPGFYTTRIL---STMLSEAMRILQ-EG  196 (269)
Q Consensus       128 ~HffnP~-~--~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v--kd--~pGfI~nRll---~al~~EA~~lv~-eG  196 (269)
                      ..-+.++ .  .-.++-++.+   ++++++++..+++.+|+.++.+  .+  ..|...+-++   .+.++|++.+.+ .|
T Consensus       125 apv~g~~~~~~~~~~~i~~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~G  201 (306)
T 3l6d_A          125 GMIVAYPRNVGHRESHSIHTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFG  201 (306)
T ss_dssp             EEEESCGGGTTCTTCEEEEEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccCcccccCCceEEEEcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4333221 1  1123444444   6899999999999998888888  54  4566666332   467889988875 57


Q ss_pred             CCHHHHHHHHH-hc
Q psy9059         197 TSPKDLDRLTK-QF  209 (269)
Q Consensus       197 is~edID~a~~-g~  209 (269)
                      ++++++..++. +.
T Consensus       202 ld~~~~~~~~~~~~  215 (306)
T 3l6d_A          202 LPVSKTARLLLETS  215 (306)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhh
Confidence            89999988886 53

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.39  E-value=0.0009  Score=60.89  Aligned_cols=139  Identities=9%  Similarity=0.022  Sum_probs=93.2

Q ss_pred             ec-CHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCC-CCCCeEEEeecc
Q psy9059          57 LY-TYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPI-QTPHLIIGMHYF  131 (269)
Q Consensus        57 ~~-~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~-~~p~R~i~~Hff  131 (269)
                      +. |++|++.++|  +|+.|||.....+    ...++.+.+++++++.+.|+.-  |.+.  + +.+ .+.-+++..-.+
T Consensus        77 ~~~s~~e~~~~aD--vVi~avp~~~~~~----~~~~i~~~l~~~~ivv~~st~~--p~~~~~~~~~l~~~g~~~~d~pv~  148 (317)
T 4ezb_A           77 EPLDDVAGIACAD--VVLSLVVGAATKA----VAASAAPHLSDEAVFIDLNSVG--PDTKALAAGAIATGKGSFVEGAVM  148 (317)
T ss_dssp             EEESSGGGGGGCS--EEEECCCGGGHHH----HHHHHGGGCCTTCEEEECCSCC--HHHHHHHHHHHHTSSCEEEEEEEC
T ss_pred             CCCCHHHHHhcCC--EEEEecCCHHHHH----HHHHHHhhcCCCCEEEECCCCC--HHHHHHHHHHHHHcCCeEEeccCC
Confidence            55 8899998766  9999999976544    4588888888888777655433  3222  2 111 222345443223


Q ss_pred             CC--CCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch---------hHHHHHHHHHHHHHHHHH-cCCCH
Q psy9059         132 SP--VDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF---------YTTRILSTMLSEAMRILQ-EGTSP  199 (269)
Q Consensus       132 nP--~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf---------I~nRll~al~~EA~~lv~-eGis~  199 (269)
                      .|  ...-.+..++.|+.+     +++..+++.+|+.++.+.+.+|-         .......+.++|++.+.+ .|+++
T Consensus       149 g~~~a~~g~l~i~vgg~~~-----~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~  223 (317)
T 4ezb_A          149 ARVPPYAEKVPILVAGRRA-----VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTE  223 (317)
T ss_dssp             SCSTTTGGGSEEEEESTTH-----HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCchhhcCCEEEEEeCChH-----HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            33  234467778887653     78889999999999999764552         233456778899998876 68877


Q ss_pred             HHHHHHHHh
Q psy9059         200 KDLDRLTKQ  208 (269)
Q Consensus       200 edID~a~~g  208 (269)
                      +.++.+..+
T Consensus       224 ~~~~~l~~~  232 (317)
T 4ezb_A          224 RILDSVQET  232 (317)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            777776654

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.35  E-value=0.0001  Score=65.53  Aligned_cols=148  Identities=14%  Similarity=0.052  Sum_probs=92.8

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHH---HhcCCCCcEEecCCCCCccccccc----CCCCCCCeE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERI---YMYTYSERLMGSNGLAMVFPLQEQ----IPIQTPHLI  125 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l---~~~~~~~~iiaSnTS~l~~p~~~~----~~~~~p~R~  125 (269)
                      +++.+.+++|++.++|  +|+.++|....++  . ++.++   .+.+++++++.+ +|++  +....    .......+.
T Consensus        43 g~~~~~~~~~~~~~~D--vvi~~vp~~~~~~--~-v~~~~~~~~~~l~~~~~vv~-~s~~--~~~~~~~~~~~~~~~g~~  114 (296)
T 2gf2_A           43 GEQVVSSPADVAEKAD--RIITMLPTSINAI--E-AYSGANGILKKVKKGSLLID-SSTI--DPAVSKELAKEVEKMGAV  114 (296)
T ss_dssp             TCEECSSHHHHHHHCS--EEEECCSSHHHHH--H-HHHSTTSGGGTCCTTCEEEE-CSCC--CHHHHHHHHHHHHHTTCE
T ss_pred             CCeecCCHHHHHhcCC--EEEEeCCCHHHHH--H-HHhCchhHHhcCCCCCEEEE-CCCC--CHHHHHHHHHHHHHcCCE
Confidence            4677889999997766  9999999866555  3 44443   335678888888 7777  33221    111111222


Q ss_pred             EEeeccCCC---CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-Cch---hHHHHHH----HHHHHHHHHHH
Q psy9059         126 IGMHYFSPV---DKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-PGF---YTTRILS----TMLSEAMRILQ  194 (269)
Q Consensus       126 i~~HffnP~---~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-pGf---I~nRll~----al~~EA~~lv~  194 (269)
                      +.-++..+.   ...+...++.+  .+++.++.+..+++.+|+.++.+.+. .|.   ++|+.+.    .+++|++.+.+
T Consensus       115 ~~~~p~~~g~~~a~~~~~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~  192 (296)
T 2gf2_A          115 FMDAPVSGGVGAARSGNLTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGI  192 (296)
T ss_dssp             EEECCEESHHHHHHHTCEEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCChhHHhcCcEEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222111   00122345544  46888999999999999998887542 122   2344443    58999998765


Q ss_pred             -cCCCHHHHHHHHH-hcC
Q psy9059         195 -EGTSPKDLDRLTK-QFG  210 (269)
Q Consensus       195 -eGis~edID~a~~-g~G  210 (269)
                       .|+++++++.++. +.|
T Consensus       193 ~~G~~~~~~~~~~~~~~~  210 (296)
T 2gf2_A          193 RLGLDPKLLAKILNMSSG  210 (296)
T ss_dssp             HTTCCHHHHHHHHHTSTT
T ss_pred             HcCCCHHHHHHHHHhCcc
Confidence             6889999999886 554

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.34  E-value=0.0004  Score=62.50  Aligned_cols=104  Identities=12%  Similarity=0.117  Sum_probs=75.1

Q ss_pred             CHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCCCC---
Q psy9059          59 TYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVD---  135 (269)
Q Consensus        59 ~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~---  135 (269)
                      +..+++.++|  +|+.|||...  .  .++++++.++++++++|...+|.-...+..+... .+.|+++.||..++.   
T Consensus        58 ~~~~~~~~aD--vVilavp~~~--~--~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~-~~~~~v~~hP~~g~~~~~  130 (298)
T 2pv7_A           58 VAESILANAD--VVIVSVPINL--T--LETIERLKPYLTENMLLADLTSVKREPLAKMLEV-HTGAVLGLHPMFGADIAS  130 (298)
T ss_dssp             GHHHHHTTCS--EEEECSCGGG--H--HHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH-CSSEEEEEEECSCTTCSC
T ss_pred             CHHHHhcCCC--EEEEeCCHHH--H--HHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh-cCCCEEeeCCCCCCCchh
Confidence            6888887766  9999999864  6  8999999999999998886655421022222221 257999999965432   


Q ss_pred             -CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy9059         136 -KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK  171 (269)
Q Consensus       136 -~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk  171 (269)
                       .-..+-++++.  +++..+.+.++++.+|..++.+.
T Consensus       131 ~~g~~~~l~~~~--~~~~~~~v~~l~~~~G~~~~~~~  165 (298)
T 2pv7_A          131 MAKQVVVRCDGR--FPERYEWLLEQIQIWGAKIYQTN  165 (298)
T ss_dssp             CTTCEEEEEEEE--CGGGTHHHHHHHHHTTCEEEECC
T ss_pred             hcCCeEEEecCC--CHHHHHHHHHHHHHcCCEEEECC
Confidence             12345566654  77888999999999999988874

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.29  E-value=6.1e-05  Score=69.21  Aligned_cols=71  Identities=13%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeec--CCCcCC---------------CchhHHHHHHHhcCCCCcEE--ecCCCCCcc
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPL--QEQIPI---------------QTPQQMSERIYMYTYSERLM--GSNGLAMVF  111 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--pE~l~~---------------K~k~~l~~~l~~~~~~~~ii--aSnTS~l~~  111 (269)
                      ..+++++.++ +|++|||  +|++++  |++...               +.|++++++|++++ |++++  +||+++.  
T Consensus        58 ~~~i~~t~d~-~al~~aD--~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~--  131 (322)
T 1t2d_A           58 NCKVSGSNTY-DDLAGAD--VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDV--  131 (322)
T ss_dssp             CCCEEEECCG-GGGTTCS--EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHH--
T ss_pred             CcEEEECCCH-HHhCCCC--EEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHH--
Confidence            4688988899 8998777  999999  876542               23499999999998 67755  8999986  


Q ss_pred             ccccc-CCCC--CCCeEEEe
Q psy9059         112 PLQEQ-IPIQ--TPHLIIGM  128 (269)
Q Consensus       112 p~~~~-~~~~--~p~R~i~~  128 (269)
                       ++.+ ....  +|+|++|+
T Consensus       132 -~t~~~~~~~g~~~~rviG~  150 (322)
T 1t2d_A          132 -MVQLLHQHSGVPKNKIIGL  150 (322)
T ss_dssp             -HHHHHHHHHCCCGGGEEEC
T ss_pred             -HHHHHHHhcCCChHHEEec
Confidence             2342 2222  57888877

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.26  E-value=0.00099  Score=58.99  Aligned_cols=133  Identities=11%  Similarity=-0.009  Sum_probs=86.6

Q ss_pred             CCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc-cCCCCCCCeEEEe-eccCCCCCCc-------
Q psy9059          68 NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-QIPIQTPHLIIGM-HYFSPVDKMQ-------  138 (269)
Q Consensus        68 ~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~~~~~~p~R~i~~-HffnP~~~~~-------  138 (269)
                      ++|+|+.|+|..  .-  .+++++|.++++++++|.+.++++  +..+ +...-.+.|++.. +++..+...|       
T Consensus        74 ~~d~vi~~v~~~--~~--~~v~~~l~~~l~~~~~iv~~~~g~--~~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~  147 (316)
T 2ew2_A           74 QVDLIIALTKAQ--QL--DAMFKAIQPMITEKTYVLCLLNGL--GHEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLG  147 (316)
T ss_dssp             CCSEEEECSCHH--HH--HHHHHHHGGGCCTTCEEEECCSSS--CTHHHHTTTSCGGGEEEEEECCCCEEEETTEEEECS
T ss_pred             CCCEEEEEeccc--cH--HHHHHHHHHhcCCCCEEEEecCCC--CcHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEec
Confidence            355999999975  34  688899999999999999988887  4423 3322223477743 3322221111       


Q ss_pred             --EEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc------------------------CchhH-----HHHHHHHHH
Q psy9059         139 --LLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG------------------------PGFYT-----TRILSTMLS  187 (269)
Q Consensus       139 --lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~------------------------pGfI~-----nRll~al~~  187 (269)
                        .+.++....++++..+.+.++++..|..+....|.                        +|++.     ..+...+++
T Consensus       148 ~g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  227 (316)
T 2ew2_A          148 DGEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLIS  227 (316)
T ss_dssp             CCCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHH
T ss_pred             CCcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHH
Confidence              12344445567899999999999999877666543                        11211     266788889


Q ss_pred             HHHHHHH-cCC--CHHHHHHHH
Q psy9059         188 EAMRILQ-EGT--SPKDLDRLT  206 (269)
Q Consensus       188 EA~~lv~-eGi--s~edID~a~  206 (269)
                      |++.+.+ .|+  +.+++...+
T Consensus       228 E~~~la~~~G~~~~~~~~~~~~  249 (316)
T 2ew2_A          228 EFAAVAEKEAIYLDQAEVYTHI  249 (316)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCChHHHHHHH
Confidence            9988875 788  345564444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.09  E-value=0.003  Score=60.85  Aligned_cols=151  Identities=7%  Similarity=0.021  Sum_probs=96.1

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCc-----------CCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc-cC--
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQI-----------PIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-QI--  117 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l-----------~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~~--  117 (269)
                      +++++++++++++.++|  +|+.|||...           |++.-.++.++|.++++++++|.. +|+.+.-.++ +.  
T Consensus        72 ~~l~~t~~~~~~~~~aD--vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~-~STv~~gt~~~l~~~  148 (481)
T 2o3j_A           72 RNLFFSSDIPKAIAEAD--LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVE-KSTVPVKAAESIGCI  148 (481)
T ss_dssp             TTEEEESCHHHHHHHCS--EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHH
T ss_pred             CCEEEECCHHHHhhcCC--EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEE-CCCCCCCHHHHHHHH
Confidence            57999999999998766  9999998743           443337888999999998887763 3333111122 11  


Q ss_pred             --C-CC--CCCeEEEeeccCCCCCCcEE---------EEeCCCCCC---HHHHHHHHHHHHhCCc-EEEEEec-----cC
Q psy9059         118 --P-IQ--TPHLIIGMHYFSPVDKMQLL---------EIITTEQTS---QDTAASAVAVGLKQGK-VVITVKD-----GP  174 (269)
Q Consensus       118 --~-~~--~p~R~i~~HffnP~~~~~lV---------Eiv~~~~Ts---~e~~~~~~~~~~~lGk-~pv~vkd-----~p  174 (269)
                        . ..  ...++.+  .++|....+-.         -|+-|..++   +++.+.+.++++.+++ .++.+.+     ..
T Consensus       149 l~~~~~~~~~~d~~v--~~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~  226 (481)
T 2o3j_A          149 LREAQKNNENLKFQV--LSNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELS  226 (481)
T ss_dssp             HHHHTC----CCEEE--EECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHH
T ss_pred             HHHhhCcCcCCceEE--EeCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHH
Confidence              1 11  0112212  23454433221         344333332   3678889999999986 6666543     33


Q ss_pred             chhHHH---HHHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy9059         175 GFYTTR---ILSTMLSEAMRILQ-EGTSPKDLDRLTK  207 (269)
Q Consensus       175 GfI~nR---ll~al~~EA~~lv~-eGis~edID~a~~  207 (269)
                      .++.|.   +..+++||+..+.+ .|++++++..++.
T Consensus       227 Kl~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~~~~~  263 (481)
T 2o3j_A          227 KLVANAFLAQRISSINSISAVCEATGAEISEVAHAVG  263 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHc
Confidence            466676   45788999998876 5889999988875

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.93  E-value=0.0025  Score=60.98  Aligned_cols=150  Identities=5%  Similarity=-0.086  Sum_probs=98.1

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcC------CCchhHHHHHHHhcCCCCcEEecCCCCCcccc-cc-c-CCCC-
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIP------IQTPQQMSERIYMYTYSERLMGSNGLAMVFPL-QE-Q-IPIQ-  120 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~------~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~-~~-~-~~~~-  120 (269)
                      .++++++++++|++.++|  +|+.|||...+      ++.-++++++|.+++++++++...| +.+ |- ++ + ..+. 
T Consensus        63 ~~~l~~t~d~~ea~~~aD--vViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~-pgt~~~l~~~l~~  138 (450)
T 3gg2_A           63 AGRLRFGTEIEQAVPEAD--IIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVP-VGSYRLIRKAIQE  138 (450)
T ss_dssp             TTSEEEESCHHHHGGGCS--EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCC-TTHHHHHHHHHHH
T ss_pred             cCcEEEECCHHHHHhcCC--EEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCC-CcchHHHHHHHHH
Confidence            478999999999998877  99999988743      3333889999999999888776543 341 21 11 1 1110 


Q ss_pred             -CC-----CeEEEeeccCCCCCCcEEE---------EeCCCCCCHHHHHHHHHHHHhCCc--EEEEEecc-----CchhH
Q psy9059         121 -TP-----HLIIGMHYFSPVDKMQLLE---------IITTEQTSQDTAASAVAVGLKQGK--VVITVKDG-----PGFYT  178 (269)
Q Consensus       121 -~p-----~R~i~~HffnP~~~~~lVE---------iv~~~~Ts~e~~~~~~~~~~~lGk--~pv~vkd~-----pGfI~  178 (269)
                       .+     ..+-++  ++|....+-..         |+-|. .++++.+.+..+++.+++  .++.+.+.     -.++.
T Consensus       139 ~~~~~~~~~d~~v~--~~Pe~a~eG~~~~~~~~p~~ivvG~-~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~  215 (450)
T 3gg2_A          139 ELDKREVLIDFDIA--SNPEFLKEGNAIDDFMKPDRVVVGV-DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAA  215 (450)
T ss_dssp             HHHHTTCCCCEEEE--ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHH
T ss_pred             hccccCcCcceeEE--echhhhcccchhhhccCCCEEEEEc-CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHH
Confidence             01     122222  35655444222         34332 368899999999999886  36665443     23455


Q ss_pred             HH---HHHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy9059         179 TR---ILSTMLSEAMRILQ-EGTSPKDLDRLTK  207 (269)
Q Consensus       179 nR---ll~al~~EA~~lv~-eGis~edID~a~~  207 (269)
                      |-   +..+.+||+..+.+ .|++++++-.++.
T Consensus       216 N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~  248 (450)
T 3gg2_A          216 NAMLATRISFMNDVANLCERVGADVSMVRLGIG  248 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHc
Confidence            55   34677899998876 6889999888874

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.81  E-value=0.00017  Score=65.78  Aligned_cols=67  Identities=10%  Similarity=0.223  Sum_probs=52.5

Q ss_pred             CeEEecCHHHHhcCCCCceEEeec-------------CCCcCCCchhHHHHHHHhcCCCCcEE--ecCCCCCccccccc-
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPL-------------QEQIPIQTPQQMSERIYMYTYSERLM--GSNGLAMVFPLQEQ-  116 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~v-------------pE~l~~K~k~~l~~~l~~~~~~~~ii--aSnTS~l~~p~~~~-  116 (269)
                      +++.+.++ ++++|+|  +|++++             .|+.++|  ++++++|+++| |+++|  +||++..   ++.. 
T Consensus        65 ~i~~t~d~-~~l~~aD--~Vi~aag~~~pG~tR~dl~~~n~~i~--~~i~~~i~~~~-p~a~iiv~sNP~~~---~t~~~  135 (303)
T 2i6t_A           65 NVEISKDL-SASAHSK--VVIFTVNSLGSSQSYLDVVQSNVDMF--RALVPALGHYS-QHSVLLVASQPVEI---MTYVT  135 (303)
T ss_dssp             TEEEESCG-GGGTTCS--EEEECCCC----CCHHHHHHHHHHHH--HHHHHHHHHHT-TTCEEEECSSSHHH---HHHHH
T ss_pred             CeEEeCCH-HHHCCCC--EEEEcCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHhC-CCeEEEEcCChHHH---HHHHH
Confidence            67777888 8887766  999998             8999999  99999999998 77776  9998865   3332 


Q ss_pred             -CCCC-CCCeEEEe
Q psy9059         117 -IPIQ-TPHLIIGM  128 (269)
Q Consensus       117 -~~~~-~p~R~i~~  128 (269)
                       .... .|.|++|+
T Consensus       136 ~~~~~~p~~rviG~  149 (303)
T 2i6t_A          136 WKLSTFPANRVIGI  149 (303)
T ss_dssp             HHHHCCCGGGEEEC
T ss_pred             HHhcCCCHHHeeCC
Confidence             2122 26788888

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.00073  Score=65.64  Aligned_cols=148  Identities=11%  Similarity=0.109  Sum_probs=96.5

Q ss_pred             cCeEEecCHHHHhcC-CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCC-CCCeEEEe
Q psy9059          52 TGITYLYTYSERLMG-SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQ-TPHLIIGM  128 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~-~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~-~p~R~i~~  128 (269)
                      .+++.+.|++|++.+ ..+|+|+.+||....++   +++++|.++++++.||.+.+++....+..+ +.+. ..-+++.+
T Consensus        57 ~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~---~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~  133 (497)
T 2p4q_A           57 KSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD---ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGS  133 (497)
T ss_dssp             SSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH---HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH---HHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCC
Confidence            357888999999976 12449999999976665   566889999988777775555441111122 1121 12345555


Q ss_pred             eccCCCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcE------EEEE-eccCch----hHHHHH---HHHHHHHHH
Q psy9059         129 HYFSPVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKV------VITV-KDGPGF----YTTRIL---STMLSEAMR  191 (269)
Q Consensus       129 HffnP~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~------pv~v-kd~pGf----I~nRll---~al~~EA~~  191 (269)
                      ...+.+.   .-+  -++.+.  +++..+++..+++.+|+.      +..+ ....|.    +-|.+.   ...++|++.
T Consensus       134 pVsgg~~~a~~G~--~im~gg--~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~  209 (497)
T 2p4q_A          134 GVSGGEEGARYGP--SLMPGG--SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYD  209 (497)
T ss_dssp             EEESHHHHHHHCC--EEEEEE--CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccChhHhhcCC--eEEecC--CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333221   011  144442  678899999999999987      5555 344444    356665   688899999


Q ss_pred             HHHc--CCCHHHHHHHH
Q psy9059         192 ILQE--GTSPKDLDRLT  206 (269)
Q Consensus       192 lv~e--Gis~edID~a~  206 (269)
                      +.+.  |++++++..++
T Consensus       210 l~~~~lGl~~~~~~~~~  226 (497)
T 2p4q_A          210 IMKRLGGFTDKEISDVF  226 (497)
T ss_dssp             HHHHTTCCCHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHH
Confidence            9876  88999998776

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.70  E-value=0.017  Score=53.45  Aligned_cols=139  Identities=10%  Similarity=0.060  Sum_probs=91.8

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc----c-c-CCCCCCCeE
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ----E-Q-IPIQTPHLI  125 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~----~-~-~~~~~p~R~  125 (269)
                      .+++++++++|++.++|  +|+.+||..  ..  ++++++|.++++++++|.|.+.++. +.+    + + +... ..++
T Consensus        85 ~~i~~t~d~~ea~~~aD--vVilaVp~~--~~--~~vl~~i~~~l~~~~ivvs~~kGi~-~~t~~~se~i~~~l~-~~~~  156 (356)
T 3k96_A           85 ETLKAYCDLKASLEGVT--DILIVVPSF--AF--HEVITRMKPLIDAKTRIAWGTKGLA-KGSRLLHEVVATELG-QVPM  156 (356)
T ss_dssp             TTEEEESCHHHHHTTCC--EEEECCCHH--HH--HHHHHHHGGGCCTTCEEEECCCSCB-TTTBCHHHHHHHHHC-SCCE
T ss_pred             CCeEEECCHHHHHhcCC--EEEECCCHH--HH--HHHHHHHHHhcCCCCEEEEEeCCCC-cCccCHHHHHHHHcC-CCCE
Confidence            47899999999998776  999999985  45  8999999999999999999999883 221    1 1 1111 1222


Q ss_pred             EEeeccCCCCC------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCc----------------------hh
Q psy9059         126 IGMHYFSPVDK------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPG----------------------FY  177 (269)
Q Consensus       126 i~~HffnP~~~------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pG----------------------fI  177 (269)
                      .++  ..|...      .|-.=++.+  .+++..+.+.+++...+..++...|..|                      +-
T Consensus       157 ~vl--sgP~~a~ev~~g~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g  232 (356)
T 3k96_A          157 AVI--SGPSLATEVAANLPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLG  232 (356)
T ss_dssp             EEE--ESSCCHHHHHTTCCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEE--ECccHHHHHHcCCCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            222  234321      222112222  4788899999999988988877776544                      11


Q ss_pred             HH---HHHHHHHHHHHHHHH-cCCCHHHH
Q psy9059         178 TT---RILSTMLSEAMRILQ-EGTSPKDL  202 (269)
Q Consensus       178 ~n---Rll~al~~EA~~lv~-eGis~edI  202 (269)
                      -|   .+....++|+.++.+ .|++++.+
T Consensus       233 ~N~~aal~~~~l~E~~~l~~a~G~~~~t~  261 (356)
T 3k96_A          233 SNARAALITRGLTEMGRLVSVFGGKQETL  261 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCChHhh
Confidence            11   334556678877754 67776644

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.63  E-value=0.0028  Score=59.01  Aligned_cols=147  Identities=9%  Similarity=0.042  Sum_probs=95.4

Q ss_pred             CeEEecCHHHHhcCC-CCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCC-CCCCeEEE
Q psy9059          53 GITYLYTYSERLMGS-NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPI-QTPHLIIG  127 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~-~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~-~~p~R~i~  127 (269)
                      +++.+.|++|++.++ .+|+|+.+||..  .-  .+++.+|.+.+++++||.+.|++.  |.+.  + ..+ .+.-+++.
T Consensus        65 g~~~~~s~~e~~~~a~~~DvVi~~vp~~--~v--~~vl~~l~~~l~~g~iiId~st~~--~~~~~~~~~~l~~~g~~~vd  138 (358)
T 4e21_A           65 GIAGARSIEEFCAKLVKPRVVWLMVPAA--VV--DSMLQRMTPLLAANDIVIDGGNSH--YQDDIRRADQMRAQGITYVD  138 (358)
T ss_dssp             TCBCCSSHHHHHHHSCSSCEEEECSCGG--GH--HHHHHHHGGGCCTTCEEEECSSCC--HHHHHHHHHHHHTTTCEEEE
T ss_pred             CCEEeCCHHHHHhcCCCCCEEEEeCCHH--HH--HHHHHHHHhhCCCCCEEEeCCCCC--hHHHHHHHHHHHHCCCEEEe
Confidence            567788999999877 124999999998  44  678899999999888888777665  3222  2 112 22234444


Q ss_pred             eeccCCCCC---CcEEEEeCCCCCCHHHHHHHHHHHHhCC--------------------cEEEEEe-ccCchhHHHHH-
Q psy9059         128 MHYFSPVDK---MQLLEIITTEQTSQDTAASAVAVGLKQG--------------------KVVITVK-DGPGFYTTRIL-  182 (269)
Q Consensus       128 ~HffnP~~~---~~lVEiv~~~~Ts~e~~~~~~~~~~~lG--------------------k~pv~vk-d~pGfI~nRll-  182 (269)
                      .--+.++.-   -+  =++.|  .++++++++..+++.+|                    +.++.+. ...|..+..+. 
T Consensus       139 apVsGg~~~a~~G~--~im~G--G~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n  214 (358)
T 4e21_A          139 VGTSGGIFGLERGY--CLMIG--GEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHN  214 (358)
T ss_dssp             EEEECGGGHHHHCC--EEEEE--SCHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHhcCC--eeeec--CCHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHH
Confidence            322211110   01  13333  36899999999999998                    5677774 34565554443 


Q ss_pred             ------HHHHHHHHHHHHc-------------------------CCCHHHHHHHHH-hc
Q psy9059         183 ------STMLSEAMRILQE-------------------------GTSPKDLDRLTK-QF  209 (269)
Q Consensus       183 ------~al~~EA~~lv~e-------------------------Gis~edID~a~~-g~  209 (269)
                            ...++|++.+.+.                         |++.++|=.+|+ |.
T Consensus       215 ~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~  273 (358)
T 4e21_A          215 GIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGS  273 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHhCcc
Confidence                  3456888888876                         457777777776 53

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.60  E-value=0.0061  Score=59.01  Aligned_cols=151  Identities=9%  Similarity=-0.038  Sum_probs=94.0

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCc--------CCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc-cC----
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQI--------PIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-QI----  117 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l--------~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~~----  117 (269)
                      .++++++++ .+++.++|  +|+.|||+..        |++.-....+.|.+++++++++. +.||.+.-.++ +.    
T Consensus        87 ~g~l~~ttd-~ea~~~aD--vViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV-~~STv~pgtt~~v~~~il  162 (478)
T 3g79_A           87 AGKFECTPD-FSRISELD--AVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVV-LESTITPGTTEGMAKQIL  162 (478)
T ss_dssp             TTCEEEESC-GGGGGGCS--EEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEE-ECSCCCTTTTTTHHHHHH
T ss_pred             cCCeEEeCc-HHHHhcCC--EEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEE-EeCCCChHHHHHHHHHHH
Confidence            488999999 78997766  9999999975        34322456678888888887764 55565211111 11    


Q ss_pred             ----CCCCCCeEEEeeccCCCCCCcEE---------EEeCCCCCCHHHHHHHHHHHHhC-CcEEEEEeccC-----chhH
Q psy9059         118 ----PIQTPHLIIGMHYFSPVDKMQLL---------EIITTEQTSQDTAASAVAVGLKQ-GKVVITVKDGP-----GFYT  178 (269)
Q Consensus       118 ----~~~~p~R~i~~HffnP~~~~~lV---------Eiv~~~~Ts~e~~~~~~~~~~~l-Gk~pv~vkd~p-----GfI~  178 (269)
                          +.....++-.+  ++|....+--         =||.|  .+++..+++..+++.+ ++.++.+.+..     ..+.
T Consensus       163 e~~~g~~~~~d~~v~--~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~  238 (478)
T 3g79_A          163 EEESGLKAGEDFALA--HAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAE  238 (478)
T ss_dssp             HHHHCCCBTTTBEEE--ECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHH
T ss_pred             HHhcCCCcCCceeEE--eCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHH
Confidence                11111222222  3565443300         14444  3577889999999998 88887775421     1233


Q ss_pred             HHH---HHHHHHHHHHHHH-cCCCHHHHHHHHH-hc
Q psy9059         179 TRI---LSTMLSEAMRILQ-EGTSPKDLDRLTK-QF  209 (269)
Q Consensus       179 nRl---l~al~~EA~~lv~-eGis~edID~a~~-g~  209 (269)
                      |-+   ..+++||+..+.+ -|++++++=.++. ..
T Consensus       239 N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~  274 (478)
T 3g79_A          239 NTFRDLQIAAINQLALYCEAMGINVYDVRTGVDSLK  274 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence            333   2567899998876 6888888777764 44

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.47  E-value=0.0011  Score=56.80  Aligned_cols=106  Identities=5%  Similarity=0.038  Sum_probs=68.8

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-----------CCCCC
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-----------IPIQT  121 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-----------~~~~~  121 (269)
                      ++++. ++.+++.++|  +|+.++|..  ..  +++++ +.... +++++.+.+++.  +.+.+           +... 
T Consensus        71 g~~~~-~~~~~~~~~D--vVi~av~~~--~~--~~v~~-l~~~~-~~~~vv~~s~g~--~~~~l~~~~~~~~~l~~~l~-  138 (215)
T 2vns_A           71 AAQVT-FQEEAVSSPE--VIFVAVFRE--HY--SSLCS-LSDQL-AGKILVDVSNPT--EQEHLQHRESNAEYLASLFP-  138 (215)
T ss_dssp             TSEEE-EHHHHTTSCS--EEEECSCGG--GS--GGGGG-GHHHH-TTCEEEECCCCC--HHHHHHCSSCHHHHHHHHCT-
T ss_pred             CCcee-cHHHHHhCCC--EEEECCChH--HH--HHHHH-HHHhc-CCCEEEEeCCCc--ccccccccccHHHHHHHHCC-
Confidence            34555 8889987666  999999964  34  56665 76666 788999988887  43211           1122 


Q ss_pred             CCeEEEeeccCCCCCCcEEEEeCCCCC-------CHHHHHHHHHHHHhCCcEEEEEec
Q psy9059         122 PHLIIGMHYFSPVDKMQLLEIITTEQT-------SQDTAASAVAVGLKQGKVVITVKD  172 (269)
Q Consensus       122 p~R~i~~HffnP~~~~~lVEiv~~~~T-------s~e~~~~~~~~~~~lGk~pv~vkd  172 (269)
                      ..+++.  .+|+....++.+-+....+       +++..+.+.++++.+|+.++.+.+
T Consensus       139 ~~~vv~--~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~~g~  194 (215)
T 2vns_A          139 TCTVVK--AFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVDMGS  194 (215)
T ss_dssp             TSEEEE--ECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             CCeEEe--ccccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEeecc
Confidence            235543  3465443332221112223       899999999999999999998853

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.32  E-value=0.00011  Score=67.21  Aligned_cols=107  Identities=15%  Similarity=0.143  Sum_probs=73.1

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCc--------------CCCchhHHHHHHHhcCCCCcE--EecCCCCCcccccc
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQI--------------PIQTPQQMSERIYMYTYSERL--MGSNGLAMVFPLQE  115 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l--------------~~K~k~~l~~~l~~~~~~~~i--iaSnTS~l~~p~~~  115 (269)
                      .+++.. + .+++.++|  +|+.+++..-              +++  +++.++|.++++ +++  +.||+++.   ++.
T Consensus        55 ~~i~~~-d-~~~~~~aD--vViiav~~~~~~g~~r~dl~~~n~~i~--~~i~~~i~~~~~-~~~ii~~tNp~~~---~~~  124 (319)
T 1a5z_A           55 ANIYAG-D-YADLKGSD--VVIVAAGVPQKPGETRLQLLGRNARVM--KEIARNVSKYAP-DSIVIVVTNPVDV---LTY  124 (319)
T ss_dssp             CEEEEC-C-GGGGTTCS--EEEECCCCCCCSSCCHHHHHHHHHHHH--HHHHHHHHHHCT-TCEEEECSSSHHH---HHH
T ss_pred             cEEEeC-C-HHHhCCCC--EEEEccCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHhhCC-CeEEEEeCCcHHH---HHH
Confidence            456653 5 46776666  9999998632              245  999999999974 654  47888775   233


Q ss_pred             c-CCC-C-CCCeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHH---HHHHHHHHHH
Q psy9059         116 Q-IPI-Q-TPHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT---RILSTMLSEA  189 (269)
Q Consensus       116 ~-~~~-~-~p~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~n---Rll~al~~EA  189 (269)
                      + ... . .|+|++|+                  .|..++......+++.+|..|   ++++++++.   +.+.++|+++
T Consensus       125 ~~~~~~~~~~~rviG~------------------~t~ld~~r~~~~la~~lgv~~---~~v~~~v~G~hg~~~~p~~s~~  183 (319)
T 1a5z_A          125 FFLKESGMDPRKVFGS------------------GTVLDTARLRTLIAQHCGFSP---RSVHVYVIGEHGDSEVPVWSGA  183 (319)
T ss_dssp             HHHHHHTCCTTTEEEC------------------TTHHHHHHHHHHHHHHHTCCG---GGEECCEEBCSSTTCEECGGGC
T ss_pred             HHHHHhCCChhhEEee------------------CccHHHHHHHHHHHHHhCcCH---HHceEEEEeCCCCCcccchhhc
Confidence            2 222 2 57899988                  577777777777888888654   566677766   6666666654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.31  E-value=0.0065  Score=52.85  Aligned_cols=138  Identities=12%  Similarity=0.095  Sum_probs=80.9

Q ss_pred             cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeeccCCCCC
Q psy9059          58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYFSPVDK  136 (269)
Q Consensus        58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~HffnP~~~  136 (269)
                      .+.+|++.++|  +|+.++|.....+  . + .++.+.+++ .++-.||... .....+ +.+..+. ++..+.+.++..
T Consensus        48 ~~~~~~~~~aD--vvi~~v~~~~~~~--~-~-~~~~~~~~~-~vi~~s~~~~-~~~~~l~~~~~~~g-~~~~~v~~~~~~  118 (264)
T 1i36_A           48 ETSEEDVYSCP--VVISAVTPGVALG--A-A-RRAGRHVRG-IYVDINNISP-ETVRMASSLIEKGG-FVDAAIMGSVRR  118 (264)
T ss_dssp             ECCHHHHHTSS--EEEECSCGGGHHH--H-H-HHHHTTCCS-EEEECSCCCH-HHHHHHHHHCSSSE-EEEEEECSCHHH
T ss_pred             CCHHHHHhcCC--EEEEECCCHHHHH--H-H-HHHHHhcCc-EEEEccCCCH-HHHHHHHHHHhhCC-eeeeeeeCCccc
Confidence            67888887766  9999999866554  3 3 567677777 6665544332 011222 2333333 666666665431


Q ss_pred             --CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch-----hHHHH----HHHHHHHHHHHH-HcCCCHHHHHH
Q psy9059         137 --MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF-----YTTRI----LSTMLSEAMRIL-QEGTSPKDLDR  204 (269)
Q Consensus       137 --~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf-----I~nRl----l~al~~EA~~lv-~eGis~edID~  204 (269)
                        ....-++.++..     +.+.. ++.+|+.++.+.+.+|.     +.+..    ....++|++.+. ..|++++.++.
T Consensus       119 ~~~g~~~~~~g~~~-----~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~  192 (264)
T 1i36_A          119 KGADIRIIASGRDA-----EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVLEM  192 (264)
T ss_dssp             HGGGCEEEEESTTH-----HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccCCeEEecCCcH-----HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence              112234455432     56667 88899998888654554     22332    356788998775 46887655533


Q ss_pred             HHHhcC
Q psy9059         205 LTKQFG  210 (269)
Q Consensus       205 a~~g~G  210 (269)
                      +....|
T Consensus       193 ~~~~~g  198 (264)
T 1i36_A          193 LEYTEG  198 (264)
T ss_dssp             HHTTSC
T ss_pred             HHHhcC
Confidence            333444

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.30  E-value=0.002  Score=56.66  Aligned_cols=138  Identities=12%  Similarity=0.082  Sum_probs=85.7

Q ss_pred             HHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEe--cCCCCCccccccc-CCCCC-CCeEEEeecc-CCC
Q psy9059          60 YSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMG--SNGLAMVFPLQEQ-IPIQT-PHLIIGMHYF-SPV  134 (269)
Q Consensus        60 ~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iia--SnTS~l~~p~~~~-~~~~~-p~R~i~~Hff-nP~  134 (269)
                      +.|++.++|  +|+.|+|....++  . +++++.+.+++++++.  ||++..  ....+ +.+.. .-+++.. +. +++
T Consensus        49 ~~~~~~~~D--~vi~~v~~~~~~~--~-v~~~l~~~l~~~~~vv~~s~~~~~--~~~~l~~~~~~~g~~~~~~-p~~~~~  120 (289)
T 2cvz_A           49 PLERVAEAR--VIFTCLPTTREVY--E-VAEALYPYLREGTYWVDATSGEPE--ASRRLAERLREKGVTYLDA-PVSGGT  120 (289)
T ss_dssp             CGGGGGGCS--EEEECCSSHHHHH--H-HHHHHTTTCCTTEEEEECSCCCHH--HHHHHHHHHHTTTEEEEEC-CEESHH
T ss_pred             HHHHHhCCC--EEEEeCCChHHHH--H-HHHHHHhhCCCCCEEEECCCCCHH--HHHHHHHHHHHcCCEEEEe-cCCCCh
Confidence            677776655  9999999865555  3 6688888888888877  433321  22222 22222 2234433 21 111


Q ss_pred             C---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-Cch----hHHH---HHHHHHHHHHHHHH-cCCCHHHH
Q psy9059         135 D---KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-PGF----YTTR---ILSTMLSEAMRILQ-EGTSPKDL  202 (269)
Q Consensus       135 ~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-pGf----I~nR---ll~al~~EA~~lv~-eGis~edI  202 (269)
                      .   .-.+.-++.   ++++..+.+.+++ .+|+.++.+.+. .+.    ..|.   +....++|++.+.+ .|++++++
T Consensus       121 ~~~~~g~~~~~~~---~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~  196 (289)
T 2cvz_A          121 SGAEAGTLTVMLG---GPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKA  196 (289)
T ss_dssp             HHHHHTCEEEEEE---SCHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             hHHhhCCeEEEEC---CCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHH
Confidence            1   012233343   3788999999999 999988888553 222    2354   34678899988765 67899999


Q ss_pred             HHHHH-hc
Q psy9059         203 DRLTK-QF  209 (269)
Q Consensus       203 D~a~~-g~  209 (269)
                      +.++. +.
T Consensus       197 ~~~~~~~~  204 (289)
T 2cvz_A          197 LEVINASS  204 (289)
T ss_dssp             HHHHTTST
T ss_pred             HHHHHccC
Confidence            88886 54

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.21  E-value=0.0082  Score=57.64  Aligned_cols=147  Identities=10%  Similarity=0.091  Sum_probs=93.1

Q ss_pred             CeEEecCHHHHhcC-CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCC-CCCeEEEee
Q psy9059          53 GITYLYTYSERLMG-SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQ-TPHLIIGMH  129 (269)
Q Consensus        53 ~l~~~~~~~~a~~~-~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~-~p~R~i~~H  129 (269)
                      +++.+.|++|++.+ .++|+|+.+||....++   +++++|.++++++++|.+.+++.......+ +.+. ..-+++++-
T Consensus        52 gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~---~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~p  128 (474)
T 2iz1_A           52 NLVFTKTLEEFVGSLEKPRRIMLMVQAGAATD---ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTG  128 (474)
T ss_dssp             CEEECSSHHHHHHTBCSSCEEEECCCTTHHHH---HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEE
T ss_pred             CeEEeCCHHHHHhhccCCCEEEEEccCchHHH---HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCC
Confidence            57888999999876 12459999999876555   466889888888777776555541111222 2222 223455442


Q ss_pred             ccCCCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcE--------EEEEe-ccCc----hhHHHHH---HHHHHHHH
Q psy9059         130 YFSPVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKV--------VITVK-DGPG----FYTTRIL---STMLSEAM  190 (269)
Q Consensus       130 ffnP~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~--------pv~vk-d~pG----fI~nRll---~al~~EA~  190 (269)
                      .+.++.   .-+.  ++.+.  +++..+.+..+++.+|..        +..+. ...|    ++.|.+.   ..+++|++
T Consensus       129 v~gg~~~a~~g~~--i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~  204 (474)
T 2iz1_A          129 VSGGEKGALLGPS--MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESY  204 (474)
T ss_dssp             ECSHHHHHHHCCC--EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhhccCCe--EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            221110   1111  33332  789999999999999887        34443 2223    3556653   57889999


Q ss_pred             HHHHc--CCCHHHHHHHH
Q psy9059         191 RILQE--GTSPKDLDRLT  206 (269)
Q Consensus       191 ~lv~e--Gis~edID~a~  206 (269)
                      .+...  |++++++..++
T Consensus       205 ~l~~~~~Gl~~~~~~~l~  222 (474)
T 2iz1_A          205 DLLKRILGLSNAEIQAIF  222 (474)
T ss_dssp             HHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHH
Confidence            98875  88999988776

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.95  E-value=0.039  Score=48.03  Aligned_cols=130  Identities=11%  Similarity=0.012  Sum_probs=81.0

Q ss_pred             CHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc-cCCCCCCCeEE-Eeec-----c
Q psy9059          59 TYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-QIPIQTPHLII-GMHY-----F  131 (269)
Q Consensus        59 ~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~~~~~~p~R~i-~~Hf-----f  131 (269)
                      +..+++.++|  +|+-++|..-  =  .+++++|.++++++++|.+.+.++  ...+ +... .++ ++ +.++     .
T Consensus        56 ~~~~~~~~~d--~vi~~v~~~~--~--~~v~~~l~~~l~~~~~vv~~~~g~--~~~~~l~~~-~~~-~~~g~~~~~~~~~  125 (291)
T 1ks9_A           56 NDPDFLATSD--LLLVTLKAWQ--V--SDAVKSLASTLPVTTPILLIHNGM--GTIEELQNI-QQP-LLMGTTTHAARRD  125 (291)
T ss_dssp             SCHHHHHTCS--EEEECSCGGG--H--HHHHHHHHTTSCTTSCEEEECSSS--CTTGGGTTC-CSC-EEEEEECCEEEEE
T ss_pred             cCccccCCCC--EEEEEecHHh--H--HHHHHHHHhhCCCCCEEEEecCCC--CcHHHHHHh-cCC-eEEEEEeEccEEc
Confidence            3357777665  9999999863  3  678899999999999888877776  3333 3222 233 44 3332     2


Q ss_pred             CCCCCCcEEEEeCC-----C-CCCHHHHHHHHHHHHhCCcEEEEEeccCchhHH--------------------------
Q psy9059         132 SPVDKMQLLEIITT-----E-QTSQDTAASAVAVGLKQGKVVITVKDGPGFYTT--------------------------  179 (269)
Q Consensus       132 nP~~~~~lVEiv~~-----~-~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~n--------------------------  179 (269)
                      .| .   ..++..+     . ..+++..+.+.++++..|..+....|..+...+                          
T Consensus       126 ~p-~---~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~  201 (291)
T 1ks9_A          126 GN-V---IIHVANGITHIGPARQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHP  201 (291)
T ss_dssp             TT-E---EEEEECCCEEEEESSGGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCH
T ss_pred             CC-E---EEEecccceEEccCCCCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHH
Confidence            44 2   2233222     1 234566778889999999887766654333222                          


Q ss_pred             HHHHHHHHHHHHHHH-cCC--CHHHH
Q psy9059         180 RILSTMLSEAMRILQ-EGT--SPKDL  202 (269)
Q Consensus       180 Rll~al~~EA~~lv~-eGi--s~edI  202 (269)
                      .+...+++|++.+.+ .|+  +.+++
T Consensus       202 ~~~~~~~~E~~~va~a~G~~~~~~~~  227 (291)
T 1ks9_A          202 QEIMQICEEVAAVIEREGHHTSAEDL  227 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            455677788877754 677  34554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.83  E-value=0.031  Score=53.47  Aligned_cols=149  Identities=5%  Similarity=-0.027  Sum_probs=93.1

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCC-------CchhHHHHHHHhcCCCCcEEecCCCCCccc-ccc-c-----
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPI-------QTPQQMSERIYMYTYSERLMGSNGLAMVFP-LQE-Q-----  116 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~-------K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p-~~~-~-----  116 (269)
                      .++|++++|++|+++++|  +|+-|||-..+-       +.-+++.+.|.+++++++++..- ||.+ | .++ +     
T Consensus        69 ~g~l~~ttd~~ea~~~aD--vvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~-STv~-pgtt~~l~~~l~  144 (446)
T 4a7p_A           69 AGRLSFTTDLAEGVKDAD--AVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTK-STVP-VGTGDEVERIIA  144 (446)
T ss_dssp             TTCEEEESCHHHHHTTCS--EEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEEC-SCCC-TTHHHHHHHHHH
T ss_pred             cCCEEEECCHHHHHhcCC--EEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEe-CCCC-chHHHHHHHHHH
Confidence            478999999999998877  999999876532       22278889999999888877653 4552 2 111 1     


Q ss_pred             CCCCCCCeEEEeeccCCCCCCcEE---------EEeCCCCCCHHHHHHHHHHHHhCCcE---EEEEeccC-----chhHH
Q psy9059         117 IPIQTPHLIIGMHYFSPVDKMQLL---------EIITTEQTSQDTAASAVAVGLKQGKV---VITVKDGP-----GFYTT  179 (269)
Q Consensus       117 ~~~~~p~R~i~~HffnP~~~~~lV---------Eiv~~~~Ts~e~~~~~~~~~~~lGk~---pv~vkd~p-----GfI~n  179 (269)
                      +.... ..+-++  ++|....+--         =||-|. +++++.+.+..+++.+++.   ++.+.+..     .++.|
T Consensus       145 e~~~~-~d~~v~--~~Pe~a~eG~a~~d~~~p~~ivvG~-~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N  220 (446)
T 4a7p_A          145 EVAPN-SGAKVV--SNPEFLREGAAIEDFKRPDRVVVGT-EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAAN  220 (446)
T ss_dssp             HHSTT-SCCEEE--ECCCCCCTTSHHHHHHSCSCEEEEC-SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHH
T ss_pred             HhCCC-CCceEE--eCcccccccchhhhccCCCEEEEeC-CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHH
Confidence            11111 222222  3554433221         133332 3678999999999988875   56665422     23333


Q ss_pred             HH---HHHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy9059         180 RI---LSTMLSEAMRILQ-EGTSPKDLDRLTK  207 (269)
Q Consensus       180 Rl---l~al~~EA~~lv~-eGis~edID~a~~  207 (269)
                      -+   ..+.+||+..+.+ -|++++++=.++.
T Consensus       221 ~~~a~~ia~~nE~~~l~~~~GiD~~~v~~~~~  252 (446)
T 4a7p_A          221 AFLAVKITFINEIADLCEQVGADVQEVSRGIG  252 (446)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence            33   3567799998875 6888888877764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.78  E-value=0.0014  Score=59.57  Aligned_cols=69  Identities=13%  Similarity=0.100  Sum_probs=50.5

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeec--------------CCCcCCCchhHHHHHHHhcCCCCcEE--ecCCCCCccccc
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPL--------------QEQIPIQTPQQMSERIYMYTYSERLM--GSNGLAMVFPLQ  114 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~v--------------pE~l~~K~k~~l~~~l~~~~~~~~ii--aSnTS~l~~p~~  114 (269)
                      ..+++++.++ ++++|+|  +|++++              .++.+++  ++++++|++++ +++++  +||....   ++
T Consensus        56 ~~~i~~t~d~-~a~~~aD--~Vi~a~g~p~~~g~~r~dl~~~n~~i~--~~i~~~i~~~~-p~a~vi~~tNPv~~---~t  126 (309)
T 1ur5_A           56 DVRVTGTNNY-ADTANSD--VIVVTSGAPRKPGMSREDLIKVNADIT--RACISQAAPLS-PNAVIIMVNNPLDA---MT  126 (309)
T ss_dssp             CCCEEEESCG-GGGTTCS--EEEECCCC--------CHHHHHHHHHH--HHHHHHHGGGC-TTCEEEECCSSHHH---HH
T ss_pred             CeEEEECCCH-HHHCCCC--EEEEcCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHhhC-CCeEEEEcCCchHH---HH
Confidence            4678888888 8897776  999998              4556777  99999999998 77755  7887664   22


Q ss_pred             cc--CCC-CCCCeEEEe
Q psy9059         115 EQ--IPI-QTPHLIIGM  128 (269)
Q Consensus       115 ~~--~~~-~~p~R~i~~  128 (269)
                      .+  ... -.|+|++|+
T Consensus       127 ~~~~~~~~~~~~rviG~  143 (309)
T 1ur5_A          127 YLAAEVSGFPKERVIGQ  143 (309)
T ss_dssp             HHHHHHHCCCGGGEEEC
T ss_pred             HHHHHHcCCCHHHEEEC
Confidence            32  112 236788887

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=95.56  E-value=0.0094  Score=57.34  Aligned_cols=148  Identities=11%  Similarity=0.116  Sum_probs=91.4

Q ss_pred             CeEEecCHHHHhcC-CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCC-CCCeEEEee
Q psy9059          53 GITYLYTYSERLMG-SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQ-TPHLIIGMH  129 (269)
Q Consensus        53 ~l~~~~~~~~a~~~-~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~-~p~R~i~~H  129 (269)
                      +++.+.|++|++.. .++|+|+.+||....++   +++.+|.++++++++|.+.+++.......+ +.+. ..-+++++.
T Consensus        50 gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~---~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~p  126 (482)
T 2pgd_A           50 KVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD---NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSG  126 (482)
T ss_dssp             SCEECSSHHHHHHHBCSSCEEEECSCTTHHHH---HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEeCCHHHHHhhccCCCEEEEeCCChHHHH---HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCC
Confidence            47788899999851 13449999999866555   466788888888777776555541111122 1111 223555543


Q ss_pred             ccCCCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEE-------EEE-eccCc----hhHHHHH---HHHHHHHHH
Q psy9059         130 YFSPVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKVV-------ITV-KDGPG----FYTTRIL---STMLSEAMR  191 (269)
Q Consensus       130 ffnP~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~p-------v~v-kd~pG----fI~nRll---~al~~EA~~  191 (269)
                      .+.++.   .-+.  ++.+.  +++..+.+..+++.+|..+       ..+ ....|    ++.|.+.   ..+++|++.
T Consensus       127 v~g~~~~a~~g~~--i~~gg--~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~  202 (482)
T 2pgd_A          127 VSGGEDGARYGPS--LMPGG--NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYH  202 (482)
T ss_dssp             EESHHHHHHHCCE--EEEEE--CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhhccCCe--EEeCC--CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332211   0111  23332  4678888999999998875       344 23333    3456554   578899999


Q ss_pred             HHHc--CCCHHHHHHHHH
Q psy9059         192 ILQE--GTSPKDLDRLTK  207 (269)
Q Consensus       192 lv~e--Gis~edID~a~~  207 (269)
                      +.+.  |+++++++.++.
T Consensus       203 l~~~~~G~~~~~~~~~~~  220 (482)
T 2pgd_A          203 LMKDVLGLGHKEMAKAFE  220 (482)
T ss_dssp             HHHHTSCCCHHHHHHHHH
T ss_pred             HHHhcCCcCHHHHHHHHH
Confidence            8874  779999988873

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.55  E-value=0.019  Score=55.32  Aligned_cols=147  Identities=13%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             CeEEecCHHHHhcC-CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCC-CCCCeEEEee
Q psy9059          53 GITYLYTYSERLMG-SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPI-QTPHLIIGMH  129 (269)
Q Consensus        53 ~l~~~~~~~~a~~~-~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~-~~p~R~i~~H  129 (269)
                      +++.+.|++|++.+ ..+|+|+-+||..-.++   +++++|.++++++++|.+.+++....+..+ +.+ ...-+++.+-
T Consensus        62 gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~---~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~p  138 (480)
T 2zyd_A           62 KLVPYYTVKEFVESLETPRRILLMVKAGAGTD---AAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTG  138 (480)
T ss_dssp             CEEECSSHHHHHHTBCSSCEEEECSCSSSHHH---HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEeCCHHHHHhCCCCCCEEEEECCCHHHHH---HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCc
Confidence            58888999999976 12449999999865554   677899999988877776655541111112 111 1234555442


Q ss_pred             ccCCC---CCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcE-------EEEEec-cCch----hHHHH---HHHHHHHHHH
Q psy9059         130 YFSPV---DKMQLLEIITTEQTSQDTAASAVAVGLKQGKV-------VITVKD-GPGF----YTTRI---LSTMLSEAMR  191 (269)
Q Consensus       130 ffnP~---~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~-------pv~vkd-~pGf----I~nRl---l~al~~EA~~  191 (269)
                      -...+   ..-+ . ++.+.  +++..+.+..+++.+|..       +..+.+ ..|.    +.|.+   ....++|++.
T Consensus       139 v~gg~~~a~~g~-~-i~~gg--~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~  214 (480)
T 2zyd_A          139 VSGGEEGALKGP-S-IMPGG--QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYS  214 (480)
T ss_dssp             EESHHHHHHHCC-E-EEEES--CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHhHHhcCC-e-EEecC--CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111   1122 2 45442  689999999999999987       444532 2232    34554   4678899999


Q ss_pred             HHHc--CCCHHHHHHHH
Q psy9059         192 ILQE--GTSPKDLDRLT  206 (269)
Q Consensus       192 lv~e--Gis~edID~a~  206 (269)
                      +...  |++++++..++
T Consensus       215 l~~~~lGl~~~~~~~l~  231 (480)
T 2zyd_A          215 LLKGGLNLTNEELAQTF  231 (480)
T ss_dssp             HHHHHHCCCHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHH
Confidence            8876  89999888765

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.50  E-value=0.0094  Score=50.98  Aligned_cols=105  Identities=4%  Similarity=-0.011  Sum_probs=67.8

Q ss_pred             EecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCc-----c-------cccccC-CCCCC
Q psy9059          56 YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMV-----F-------PLQEQI-PIQTP  122 (269)
Q Consensus        56 ~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~-----~-------p~~~~~-~~~~p  122 (269)
                      ...+..+++.++|  +|+.++|-  ...  .+++++|.. . ++.++.+.+.++.     .       +++.++ .+. .
T Consensus        71 ~~~~~~~~~~~aD--vVilavp~--~~~--~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~  141 (220)
T 4huj_A           71 VKAVELKDALQAD--VVILAVPY--DSI--ADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-G  141 (220)
T ss_dssp             EEECCHHHHTTSS--EEEEESCG--GGH--HHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-T
T ss_pred             cccChHHHHhcCC--EEEEeCCh--HHH--HHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-C
Confidence            3445567776665  99999983  445  777777766 4 4677777776651     0       112222 233 4


Q ss_pred             CeEEEeeccCCCCCCc---------EEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy9059         123 HLIIGMHYFSPVDKMQ---------LLEIITTEQTSQDTAASAVAVGLKQGKVVITVK  171 (269)
Q Consensus       123 ~R~i~~HffnP~~~~~---------lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk  171 (269)
                      .+++...++.|...+.         ..-++.+  .+++..+.+.++++.+|+.|+.+.
T Consensus       142 ~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G  197 (220)
T 4huj_A          142 AKVVKAFNTLPAAVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLG  197 (220)
T ss_dssp             CEEEEESCSSCHHHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CCEEECCCCCCHHHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeC
Confidence            5777776655543332         3334443  469999999999999999999874

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=95.28  E-value=0.032  Score=53.30  Aligned_cols=145  Identities=8%  Similarity=0.002  Sum_probs=85.6

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCC-------chhHHHHHHHhcCCCCcEEecCCCCCcccccc-c-CCCCC
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQ-------TPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-Q-IPIQT  121 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K-------~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~-~~~~~  121 (269)
                      .+++++++|++|+++++|  +|+.|||+..+.+       .=.++.+.|.+ +++++++. ..|+.+.-.++ + ..+. 
T Consensus        94 ~~~l~~ttd~~ea~~~aD--vViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV-~~STv~pgtt~~l~~~l~-  168 (432)
T 3pid_A           94 PLNFRATTDKHDAYRNAD--YVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMI-IKSTIPVGFTRDIKERLG-  168 (432)
T ss_dssp             CCCEEEESCHHHHHTTCS--EEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEE-ECSCCCTTHHHHHHHHHT-
T ss_pred             cCCeEEEcCHHHHHhCCC--EEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEE-EeCCCChHHHHHHHHHHh-
Confidence            368999999999998777  9999999986543       11355677777 67777664 34554211122 2 1121 


Q ss_pred             CCeEEEeeccCCCCCCcEE---------EEeCCCCCCHHHHHHHHHHHHh--CCc-EEEEEecc-----CchhHHHH---
Q psy9059         122 PHLIIGMHYFSPVDKMQLL---------EIITTEQTSQDTAASAVAVGLK--QGK-VVITVKDG-----PGFYTTRI---  181 (269)
Q Consensus       122 p~R~i~~HffnP~~~~~lV---------Eiv~~~~Ts~e~~~~~~~~~~~--lGk-~pv~vkd~-----pGfI~nRl---  181 (269)
                       ++-++   |+|..+.+--         =||-|.  +++..+++..++..  +++ .|+.+.+.     --.+.|-+   
T Consensus       169 -~~~v~---~sPe~~~~G~A~~~~l~p~rIvvG~--~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~  242 (432)
T 3pid_A          169 -IDNVI---FSPEFLREGRALYDNLHPSRIVIGE--RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLAL  242 (432)
T ss_dssp             -CCCEE---ECCCCCCTTSHHHHHHSCSCEEESS--CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred             -hccEe---ecCccCCcchhhhcccCCceEEecC--CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHH
Confidence             12222   3777654321         133332  23566777777765  443 35555321     11233333   


Q ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059         182 LSTMLSEAMRILQ-EGTSPKDLDRLT  206 (269)
Q Consensus       182 l~al~~EA~~lv~-eGis~edID~a~  206 (269)
                      ..+++||+..+.+ .|++++++=.++
T Consensus       243 ~Ia~~nEl~~lae~~GiD~~~v~~~~  268 (432)
T 3pid_A          243 RVAYFNELDSYAESQGLNSKQIIEGV  268 (432)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            3567899998876 688887776666

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.27  E-value=0.0056  Score=55.37  Aligned_cols=68  Identities=12%  Similarity=0.156  Sum_probs=46.5

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeec--CC------------CcCCCchhHHHHHHHhcCCCCcEE--ecCCCCCcccccc
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPL--QE------------QIPIQTPQQMSERIYMYTYSERLM--GSNGLAMVFPLQE  115 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~v--pE------------~l~~K~k~~l~~~l~~~~~~~~ii--aSnTS~l~~p~~~  115 (269)
                      .+++. .++ +++.++|  +|++++  |+            +++++  ++++++|.+++ +++++  +||++..  ....
T Consensus        55 ~~i~~-~~~-~a~~~aD--vVIi~~~~~~~~g~~r~dl~~~n~~i~--~~i~~~i~~~~-p~~~vi~~tNP~~~--~~~~  125 (304)
T 2v6b_A           55 TRVWH-GGH-SELADAQ--VVILTAGANQKPGESRLDLLEKNADIF--RELVPQITRAA-PDAVLLVTSNPVDL--LTDL  125 (304)
T ss_dssp             CEEEE-ECG-GGGTTCS--EEEECC------------CHHHHHHHH--HHHHHHHHHHC-SSSEEEECSSSHHH--HHHH
T ss_pred             eEEEE-CCH-HHhCCCC--EEEEcCCCCCCCCCcHHHHHHhHHHHH--HHHHHHHHHhC-CCeEEEEecCchHH--HHHH
Confidence            45554 454 6787766  999999  54            55567  99999999996 66654  7998876  3322


Q ss_pred             cCCCCCCCeEEEe
Q psy9059         116 QIPIQTPHLIIGM  128 (269)
Q Consensus       116 ~~~~~~p~R~i~~  128 (269)
                      +.....|+|++|+
T Consensus       126 ~~~~~~~~rviG~  138 (304)
T 2v6b_A          126 ATQLAPGQPVIGS  138 (304)
T ss_dssp             HHHHSCSSCEEEC
T ss_pred             HHHhCChhcEEeC
Confidence            3222278898887

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.01  E-value=0.025  Score=54.36  Aligned_cols=148  Identities=11%  Similarity=0.056  Sum_probs=91.4

Q ss_pred             CeEEecCHHHHhcCC-CCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCC-CCCeEEEee
Q psy9059          53 GITYLYTYSERLMGS-NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQ-TPHLIIGMH  129 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~-~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~-~p~R~i~~H  129 (269)
                      ++..+.|++|++.+. ++|+|+.+||....++   +++++|.++++++++|.+.+++.......+ +.+. ..-+++++.
T Consensus        52 ~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~---~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~p  128 (478)
T 1pgj_A           52 NLKAFETMEAFAASLKKPRKALILVQAGAATD---STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG  128 (478)
T ss_dssp             GEEECSCHHHHHHHBCSSCEEEECCCCSHHHH---HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CeEEECCHHHHHhcccCCCEEEEecCChHHHH---HHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEee
Confidence            478889999998741 2449999999865555   566888888888877775554441111122 1121 233455443


Q ss_pred             ccCCCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcE-------EEEEe-ccCch----hHHHHH---HHHHHHHHH
Q psy9059         130 YFSPVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKV-------VITVK-DGPGF----YTTRIL---STMLSEAMR  191 (269)
Q Consensus       130 ffnP~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~-------pv~vk-d~pGf----I~nRll---~al~~EA~~  191 (269)
                      ...++.   .-+  -++.+.  +++..+.+..+++.+|..       +..+. ...|.    +.|.+.   ..+++|++.
T Consensus       129 v~gg~~~a~~g~--~i~~gg--~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~  204 (478)
T 1pgj_A          129 ISGGEEGARKGP--AFFPGG--TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFD  204 (478)
T ss_dssp             EESHHHHHHHCC--EEEEEE--CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHhcCC--eEeccC--CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            222111   112  133332  688999999999999886       44443 22332    345443   467899998


Q ss_pred             HHH-cCCCHHHHHHHHH
Q psy9059         192 ILQ-EGTSPKDLDRLTK  207 (269)
Q Consensus       192 lv~-eGis~edID~a~~  207 (269)
                      +.+ .|+++++++.++.
T Consensus       205 l~~~~G~~~~~~~~l~~  221 (478)
T 1pgj_A          205 ILRAMGLNNDEVAAVLE  221 (478)
T ss_dssp             HHHHTTCCHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHH
Confidence            876 5779999888773

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.88  E-value=0.18  Score=46.29  Aligned_cols=137  Identities=9%  Similarity=-0.109  Sum_probs=87.4

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHh----cCCCCcEEecCCCCCcccc----ccc----C-C
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYM----YTYSERLMGSNGLAMVFPL----QEQ----I-P  118 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~----~~~~~~iiaSnTS~l~~p~----~~~----~-~  118 (269)
                      .+++++++++|++.++|  +|+.+||.  ...  ++++++|.+    ++++++++.|.+++++ +.    ..+    . .
T Consensus        89 ~~i~~~~~~~ea~~~aD--vVilav~~--~~~--~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~-~~~~~~~~l~~~l~~~  161 (375)
T 1yj8_A           89 HNIVAHSDLASVINDAD--LLIFIVPC--QYL--ESVLASIKESESIKIASHAKAISLTKGFI-VKKNQMKLCSNYISDF  161 (375)
T ss_dssp             TTEEEESSTHHHHTTCS--EEEECCCH--HHH--HHHHHHHTC---CCCCTTCEEEECCCSCE-EETTEEECHHHHHHHH
T ss_pred             CCeEEECCHHHHHcCCC--EEEEcCCH--HHH--HHHHHHHhhhhhccCCCCCEEEEeCCccc-cCCccccCHHHHHHHH
Confidence            36888999999997766  99999997  455  899999998    8999999999998873 21    111    1 1


Q ss_pred             CCCCCeEEEeeccCCCCC------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch----------------
Q psy9059         119 IQTPHLIIGMHYFSPVDK------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF----------------  176 (269)
Q Consensus       119 ~~~p~R~i~~HffnP~~~------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf----------------  176 (269)
                      ...  .+.+.  ..|...      .+ ..++.+. .+++..+.+.+++...|..+....|..|.                
T Consensus       162 ~~~--~~~v~--~gp~~a~~v~~g~~-~~~~~~~-~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~  235 (375)
T 1yj8_A          162 LNI--PCSAL--SGANIAMDVAMENF-SEATIGG-NDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGF  235 (375)
T ss_dssp             SSS--CEEEE--ECSCCHHHHHTTCC-EEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCC--CEEEE--eCCchHHHHHhCCC-eEEEEec-CCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence            111  12211  222211      11 1222222 36788889999999999887776665331                


Q ss_pred             ------hHH---HHHHHHHHHHHHHHH-c--CCCHHH
Q psy9059         177 ------YTT---RILSTMLSEAMRILQ-E--GTSPKD  201 (269)
Q Consensus       177 ------I~n---Rll~al~~EA~~lv~-e--Gis~ed  201 (269)
                            ..|   .+....++|+..+.+ .  |+++++
T Consensus       236 ~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~  272 (375)
T 1yj8_A          236 CDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENI  272 (375)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGG
T ss_pred             HhhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcch
Confidence                  112   345667788887765 4  465544

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.58  E-value=0.038  Score=49.97  Aligned_cols=137  Identities=7%  Similarity=-0.053  Sum_probs=88.1

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcc-cc--ccc----C-CCCCCC
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVF-PL--QEQ----I-PIQTPH  123 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~-p~--~~~----~-~~~~p~  123 (269)
                      .+++++++++|++.++|  +|+.|||.  ...  .+++++|.+++++++++.|.++++.. |-  ..+    . ...++ 
T Consensus        76 ~~~~~~~~~~~~~~~aD--~Vilav~~--~~~--~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-  148 (354)
T 1x0v_A           76 PNVVAVPDVVQAAEDAD--ILIFVVPH--QFI--GKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-  148 (354)
T ss_dssp             TTEEEESSHHHHHTTCS--EEEECCCG--GGH--HHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-
T ss_pred             cCeEEEcCHHHHHcCCC--EEEEeCCH--HHH--HHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-
Confidence            36788899999997766  99999997  456  89999999999999999999988732 11  111    1 11111 


Q ss_pred             eEEEeeccCCCC------CCc-EEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch--------------------
Q psy9059         124 LIIGMHYFSPVD------KMQ-LLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF--------------------  176 (269)
Q Consensus       124 R~i~~HffnP~~------~~~-lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf--------------------  176 (269)
                       +.+  ...|-.      -.+ .+.+  + ..+++..+.+.+++...|..+....|..+.                    
T Consensus       149 -~~v--~~gp~~a~~v~~g~~~~~~~--~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~  222 (354)
T 1x0v_A          149 -MSV--LMGANIASEVADEKFCETTI--G-CKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGL  222 (354)
T ss_dssp             -EEE--EECSCCHHHHHTTCCEEEEE--E-CSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -EEE--EECCCcHHHHHhcCCceEEE--E-ECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHc
Confidence             111  122221      111 2222  2 246788899999999999887766654321                    


Q ss_pred             --hHH---HHHHHHHHHHHHHHH-cCC---CHHH
Q psy9059         177 --YTT---RILSTMLSEAMRILQ-EGT---SPKD  201 (269)
Q Consensus       177 --I~n---Rll~al~~EA~~lv~-eGi---s~ed  201 (269)
                        --|   .+....++|+..+.+ .|+   ++++
T Consensus       223 ~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~  256 (354)
T 1x0v_A          223 GFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSAT  256 (354)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGG
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence              112   345677788887764 676   6654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.55  E-value=0.12  Score=48.36  Aligned_cols=148  Identities=11%  Similarity=0.042  Sum_probs=85.6

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCc-------CCCchhHHHHHHHhcCCCCcEEec-CCCCCccccccc-CCCCC
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQI-------PIQTPQQMSERIYMYTYSERLMGS-NGLAMVFPLQEQ-IPIQT  121 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l-------~~K~k~~l~~~l~~~~~~~~iiaS-nTS~l~~p~~~~-~~~~~  121 (269)
                      .+++++++++++++.++|  +|+-|||...       |++.-.++.+.|.+ +.++++|.. +|.+.. ....+ .... 
T Consensus        58 ~~~l~~t~~~~~~~~~aD--vviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g-~~~~l~~~~~-  132 (402)
T 1dlj_A           58 QLSIKATLDSKAAYKEAE--LVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIG-FITEMRQKFQ-  132 (402)
T ss_dssp             CCCEEEESCHHHHHHHCS--EEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTT-HHHHHHHHTT-
T ss_pred             cCcEEEeCCHHHHhcCCC--EEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCcc-HHHHHHHHhC-
Confidence            367899999999998766  9999999875       33223778888888 777777664 555431 12222 2221 


Q ss_pred             CCeEEEeeccCCCCCCcE------EE---EeCCCCCC-----HHHHHHHHHHHHh-CCc-E-EEEEeccC-----chhHH
Q psy9059         122 PHLIIGMHYFSPVDKMQL------LE---IITTEQTS-----QDTAASAVAVGLK-QGK-V-VITVKDGP-----GFYTT  179 (269)
Q Consensus       122 p~R~i~~HffnP~~~~~l------VE---iv~~~~Ts-----~e~~~~~~~~~~~-lGk-~-pv~vkd~p-----GfI~n  179 (269)
                       ++.+.   ++|....+-      ..   |+-|....     .+..+.+.+++.+ ... . ++.+.+..     .++.|
T Consensus       133 -~~~v~---~~Pe~~~~G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N  208 (402)
T 1dlj_A          133 -TDRII---FSPEFLRESKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFAN  208 (402)
T ss_dssp             -CSCEE---ECCCCCCTTSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHH
T ss_pred             -CCeEE---ECCccccCcchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHH
Confidence             12222   233332211      11   44333322     1455666666654 222 2 55554421     23445


Q ss_pred             HHH---HHHHHHHHHHHH-cCCCHHHHHHHHH
Q psy9059         180 RIL---STMLSEAMRILQ-EGTSPKDLDRLTK  207 (269)
Q Consensus       180 Rll---~al~~EA~~lv~-eGis~edID~a~~  207 (269)
                      -+.   .+++||+..+.+ .|++++++-.++.
T Consensus       209 ~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~  240 (402)
T 1dlj_A          209 TYLALRVAYFNELDTYAESRKLNSHMIIQGIS  240 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence            433   577899988876 6889988888773

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=93.40  E-value=0.01  Score=54.84  Aligned_cols=91  Identities=8%  Similarity=0.068  Sum_probs=60.6

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCCCCCCeE--EE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPIQTPHLI--IG  127 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~~~p~R~--i~  127 (269)
                      +.++..+++|.+..+|  +|+.++|...+.+  +-+.+++-+.++++++|. |+|+-+ ++.+  + +.+.. .++  .+
T Consensus       207 g~~~~~~l~ell~~aD--vVil~vp~~~~t~--~li~~~~l~~mk~gaili-n~srg~-~vd~~aL~~aL~~-~~i~gag  279 (348)
T 2w2k_A          207 GAERVDSLEELARRSD--CVSVSVPYMKLTH--HLIDEAFFAAMKPGSRIV-NTARGP-VISQDALIAALKS-GKLLSAG  279 (348)
T ss_dssp             TCEECSSHHHHHHHCS--EEEECCCCSGGGT--TCBCHHHHHHSCTTEEEE-ECSCGG-GBCHHHHHHHHHT-TSEEEEE
T ss_pred             CcEEeCCHHHHhccCC--EEEEeCCCChHHH--HHhhHHHHhcCCCCCEEE-ECCCCc-hhCHHHHHHHHHh-CCceEEE
Confidence            4667778999998777  9999999988877  766666777889999885 666542 2322  2 23332 344  67


Q ss_pred             eeccCCC-----CCCcEEEEeCCCCCCH
Q psy9059         128 MHYFSPV-----DKMQLLEIITTEQTSQ  150 (269)
Q Consensus       128 ~HffnP~-----~~~~lVEiv~~~~Ts~  150 (269)
                      +|.|.|-     .+..+..++-+|.++.
T Consensus       280 lDv~~~EP~~~~~L~~~~nviltPH~~~  307 (348)
T 2w2k_A          280 LDVHEFEPQVSKELIEMKHVTLTTHIGG  307 (348)
T ss_dssp             ESSCTTTTSCCHHHHTSSSEEECCSCTT
T ss_pred             eccCCCCCCCCchhhcCCCEEEcCcCCC
Confidence            8999842     2444556666655543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.18  E-value=0.068  Score=45.26  Aligned_cols=100  Identities=3%  Similarity=-0.054  Sum_probs=63.6

Q ss_pred             HhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCc-cc-------c----cc-cC-CCCCCCeEEE-
Q psy9059          63 RLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMV-FP-------L----QE-QI-PIQTPHLIIG-  127 (269)
Q Consensus        63 a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~-~p-------~----~~-~~-~~~~p~R~i~-  127 (269)
                      ++.+  ||+|+.++|  ...-  +++++++.+.++ ++++.+.+++++ ..       .    .+ ++ ... ..+++. 
T Consensus        54 ~~~~--aD~vi~av~--~~~~--~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~  125 (209)
T 2raf_A           54 ATTL--GEIVIMAVP--YPAL--AALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKA  125 (209)
T ss_dssp             CSSC--CSEEEECSC--HHHH--HHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEEC
T ss_pred             Hhcc--CCEEEEcCC--cHHH--HHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEe
Confidence            4444  559999999  3334  678888888888 899988888762 00       1    12 22 222 357777 


Q ss_pred             eeccC-CCCC-------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEec
Q psy9059         128 MHYFS-PVDK-------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKD  172 (269)
Q Consensus       128 ~Hffn-P~~~-------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd  172 (269)
                      +|+.. |...       .+..-++.+  ++++..+.+.++++.+|..++.+.+
T Consensus       126 ~~~~~~p~~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~  176 (209)
T 2raf_A          126 FNTTFAATLQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK  176 (209)
T ss_dssp             STTSCHHHHHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred             eecccHhhccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence            55532 2111       122222333  4678999999999999999988865

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.93  E-value=0.097  Score=48.46  Aligned_cols=51  Identities=6%  Similarity=0.020  Sum_probs=43.0

Q ss_pred             CeE-EecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059          53 GIT-YLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM  109 (269)
Q Consensus        53 ~l~-~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l  109 (269)
                      ++. ++++++|++.++|  +|+.+||...  +  ++++++|.++++++++|.|++++.
T Consensus        68 ~~~~~~~~~~~a~~~aD--~Vilav~~~~--~--~~v~~~l~~~l~~~~ivv~~~~~~  119 (404)
T 3c7a_A           68 RPKVITKDPEIAISGAD--VVILTVPAFA--H--EGYFQAMAPYVQDSALIVGLPSQA  119 (404)
T ss_dssp             CCSEEESCHHHHHTTCS--EEEECSCGGG--H--HHHHHHHTTTCCTTCEEEETTCCT
T ss_pred             cceEEeCCHHHHhCCCC--EEEEeCchHH--H--HHHHHHHHhhCCCCcEEEEcCCCc
Confidence            454 7889999998766  9999999954  6  899999999999999999966554

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=92.83  E-value=0.022  Score=52.02  Aligned_cols=90  Identities=9%  Similarity=0.027  Sum_probs=57.9

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCCC-CCCeEEEe
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPIQ-TPHLIIGM  128 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~~-~p~R~i~~  128 (269)
                      ++++. +++|+++++|  +|+.++|...+.+  +-+.+++.+.+++++++. |+|+-+ +++.  + +.+. ..-+..++
T Consensus       198 g~~~~-~l~e~l~~aD--vVi~~vp~~~~t~--~~i~~~~~~~mk~gailI-n~srg~-~v~~~aL~~aL~~~~i~ga~l  270 (330)
T 2gcg_A          198 QAEFV-STPELAAQSD--FIVVACSLTPATE--GLCNKDFFQKMKETAVFI-NISRGD-VVNQDDLYQALASGKIAAAGL  270 (330)
T ss_dssp             TCEEC-CHHHHHHHCS--EEEECCCCCTTTT--TCBSHHHHHHSCTTCEEE-ECSCGG-GBCHHHHHHHHHHTSSSEEEE
T ss_pred             CceeC-CHHHHHhhCC--EEEEeCCCChHHH--HhhCHHHHhcCCCCcEEE-ECCCCc-ccCHHHHHHHHHcCCccEEEe
Confidence            45666 8999998776  9999999988777  666566777889999885 555432 2222  2 2222 22334788


Q ss_pred             eccCCCC------CCcEEEEeCCCCCC
Q psy9059         129 HYFSPVD------KMQLLEIITTEQTS  149 (269)
Q Consensus       129 HffnP~~------~~~lVEiv~~~~Ts  149 (269)
                      |+|+|..      +..+-+|+-+|.++
T Consensus       271 Dv~~~epl~~~~~l~~~~nvi~tPh~~  297 (330)
T 2gcg_A          271 DVTSPEPLPTNHPLLTLKNCVILPHIG  297 (330)
T ss_dssp             SCCSSSSCCTTCGGGGCTTEEECCSCT
T ss_pred             CCCCCCCCCCCChhhcCCCEEECCCCC
Confidence            9987753      34444566555443

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=92.81  E-value=2.7  Score=38.41  Aligned_cols=123  Identities=9%  Similarity=0.006  Sum_probs=83.7

Q ss_pred             cccccCCCC--------CCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcc
Q psy9059          40 LCTTVPLVS--------TSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVF  111 (269)
Q Consensus        40 ~~~~~~~~~--------~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~  111 (269)
                      ..-++|-|+        -...++..+++-.||+++++  +++==-|. -...  -++.++|-.++++++||+.. -+.| 
T Consensus       107 ~a~~~pkppk~~ih~~~vEdaGVkVtsDD~EAvk~AE--i~IlftPf-G~~t--~~Iakkii~~lpEgAII~nT-CTip-  179 (358)
T 2b0j_A          107 KAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGAD--IVITWLPK-GNKQ--PDIIKKFADAIPEGAIVTHA-CTIP-  179 (358)
T ss_dssp             HHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCS--EEEECCTT-CTTH--HHHHHHHGGGSCTTCEEEEC-SSSC-
T ss_pred             HHhhCCCCCccceeeccHHHcCcEeecchHHHhcCCC--EEEEecCC-CCCc--HHHHHHHHhhCcCCCEEecc-cCCC-
Confidence            334556666        11344556689999998877  88888887 3334  78999999999999999853 3332 


Q ss_pred             cccc---cCCCCCC-CeEEEeeccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         112 PLQE---QIPIQTP-HLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       112 p~~~---~~~~~~p-~R~i~~HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      |+-.   .+.+.|. -.+..+||-.=|..- =-......-.+++.+++..+++++.|+.++.+
T Consensus       180 p~~ly~~le~l~R~DvgIsS~HPaaVPgt~-Gq~~~g~~yAtEEqIeklveLaksa~k~ay~v  241 (358)
T 2b0j_A          180 TTKFAKIFKDLGREDLNITSYHPGCVPEMK-GQVYIAEGYASEEAVNKLYEIGKIARGKAFKM  241 (358)
T ss_dssp             HHHHHHHHHHTTCTTSEEEECBCSSCTTTC-CCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             HHHHHHHHHHhCcccCCeeccCCCCCCCCC-CccccccccCCHHHHHHHHHHHHHhCCCeEec
Confidence            3222   1456655 367777876544331 11223334568899999999999999999988

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.68  E-value=0.1  Score=50.45  Aligned_cols=145  Identities=10%  Similarity=0.126  Sum_probs=89.8

Q ss_pred             CeEEecCHHHHhcC-CCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccc--cc-CCC-CCCCeEEE
Q psy9059          53 GITYLYTYSERLMG-SNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQ--EQ-IPI-QTPHLIIG  127 (269)
Q Consensus        53 ~l~~~~~~~~a~~~-~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~--~~-~~~-~~p~R~i~  127 (269)
                      +++.+.|++|+++. .++|+|+-+||....++   +++++|.++++++.||...+++.  |.+  .. ..+ .+--+++.
T Consensus        52 ~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~---~vl~~l~~~L~~g~iIId~st~~--~~~t~~~~~~l~~~Gi~fvd  126 (484)
T 4gwg_A           52 KVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD---DFIEKLVPLLDTGDIIIDGGNSE--YRDTTRRCRDLKAKGILFVG  126 (484)
T ss_dssp             SCEECSSHHHHHHTBCSSCEEEECSCSSHHHH---HHHHHHGGGCCTTCEEEECSCCC--HHHHHHHHHHHHHTTCEEEE
T ss_pred             ceeccCCHHHHHhhccCCCEEEEecCChHHHH---HHHHHHHHhcCCCCEEEEcCCCC--chHHHHHHHHHHhhcccccc
Confidence            57778999999874 13459999999865554   57789999998877776655554  322  11 111 12234554


Q ss_pred             eeccCCCC---CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEE-------EEEec-cCchh----HHHH---HHHHHHHH
Q psy9059         128 MHYFSPVD---KMQLLEIITTEQTSQDTAASAVAVGLKQGKVV-------ITVKD-GPGFY----TTRI---LSTMLSEA  189 (269)
Q Consensus       128 ~HffnP~~---~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~p-------v~vkd-~pGfI----~nRl---l~al~~EA  189 (269)
                      +--...+.   .-+  =++.|  .++++++++..+++.+|..+       +.+.+ ..|..    -|-+   ....++|+
T Consensus       127 ~pVsGg~~gA~~G~--~im~G--G~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa  202 (484)
T 4gwg_A          127 SGVSGGEEGARYGP--SLMPG--GNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEA  202 (484)
T ss_dssp             EEEESHHHHHHHCC--EEEEE--ECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCCHHHHhcCC--eeecC--CCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            31111000   011  13333  25788999999999998776       55532 23332    2332   35578999


Q ss_pred             HHHHHc--CCCHHHHHHHH
Q psy9059         190 MRILQE--GTSPKDLDRLT  206 (269)
Q Consensus       190 ~~lv~e--Gis~edID~a~  206 (269)
                      +.+.+.  |++++++-.++
T Consensus       203 ~~l~~~~~Gld~~~l~~v~  221 (484)
T 4gwg_A          203 YHLMKDVLGMAQDEMAQAF  221 (484)
T ss_dssp             HHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHH
Confidence            999886  77998887765

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.96  E-value=0.025  Score=51.81  Aligned_cols=89  Identities=11%  Similarity=0.097  Sum_probs=56.8

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCCC-CCCeEEEee
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPIQ-TPHLIIGMH  129 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~~-~p~R~i~~H  129 (269)
                      +++ .++++++.++|  +|+.++|...+.+  +-+.+++.+.++++++| .|+|.-. ++++  + ..+. .+-.-.++|
T Consensus       193 ~~~-~~l~~~l~~aD--vVil~vp~~~~t~--~~i~~~~~~~mk~~ail-In~srg~-~v~~~aL~~aL~~~~i~ga~lD  265 (334)
T 2dbq_A          193 AEF-KPLEDLLRESD--FVVLAVPLTRETY--HLINEERLKLMKKTAIL-INIARGK-VVDTNALVKALKEGWIAGAGLD  265 (334)
T ss_dssp             CEE-CCHHHHHHHCS--EEEECCCCCTTTT--TCBCHHHHHHSCTTCEE-EECSCGG-GBCHHHHHHHHHHTSSSEEEES
T ss_pred             ccc-CCHHHHHhhCC--EEEECCCCChHHH--HhhCHHHHhcCCCCcEE-EECCCCc-ccCHHHHHHHHHhCCeeEEEec
Confidence            455 48999998776  9999999998887  66656777788999988 4555442 3442  2 2222 222337799


Q ss_pred             ccC--CC---CCCcEEEEeCCCCCC
Q psy9059         130 YFS--PV---DKMQLLEIITTEQTS  149 (269)
Q Consensus       130 ffn--P~---~~~~lVEiv~~~~Ts  149 (269)
                      +|+  |+   .+..+..|+-+|.++
T Consensus       266 v~~~EP~~~~~L~~~~~vi~tPh~~  290 (334)
T 2dbq_A          266 VFEEEPYYNEELFKLDNVVLTPHIG  290 (334)
T ss_dssp             CCSSSSCCCHHHHHCTTEEECSSCT
T ss_pred             CCCCCCCCCchhhcCCCEEECCccC
Confidence            998  32   233444566555443

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=91.22  E-value=0.075  Score=48.82  Aligned_cols=90  Identities=12%  Similarity=0.034  Sum_probs=57.0

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCCC-CCCeEEEee
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPIQ-TPHLIIGMH  129 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~~-~p~R~i~~H  129 (269)
                      ..+..+++|+++.+|  +|+.++|...+.+  +-+-+++-+.++++++|. |+|.-. ++..  + +.+. ..-+..+++
T Consensus       203 ~~~~~~l~ell~~aD--vVil~vP~~~~t~--~li~~~~l~~mk~gailI-n~srG~-~vd~~aL~~aL~~g~i~ga~lD  276 (333)
T 3ba1_A          203 YTYYGSVVELASNSD--ILVVACPLTPETT--HIINREVIDALGPKGVLI-NIGRGP-HVDEPELVSALVEGRLGGAGLD  276 (333)
T ss_dssp             SEEESCHHHHHHTCS--EEEECSCCCGGGT--TCBCHHHHHHHCTTCEEE-ECSCGG-GBCHHHHHHHHHHTSSCEEEES
T ss_pred             ceecCCHHHHHhcCC--EEEEecCCChHHH--HHhhHHHHhcCCCCCEEE-ECCCCc-hhCHHHHHHHHHcCCCeEEEEe
Confidence            456679999998877  9999999877666  544455556678999884 555431 3322  2 3332 334668889


Q ss_pred             ccC--C---CCCCcEEEEeCCCCCC
Q psy9059         130 YFS--P---VDKMQLLEIITTEQTS  149 (269)
Q Consensus       130 ffn--P---~~~~~lVEiv~~~~Ts  149 (269)
                      +|.  |   ..+..+-.++-+|.++
T Consensus       277 v~~~EP~~~~~L~~~~nviltPH~~  301 (333)
T 3ba1_A          277 VFEREPEVPEKLFGLENVVLLPHVG  301 (333)
T ss_dssp             CCTTTTCCCGGGGGCTTEEECSSCT
T ss_pred             cCCCCCCCcchhhcCCCEEECCcCC
Confidence            887  4   2244445566555443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=91.20  E-value=0.12  Score=47.35  Aligned_cols=89  Identities=16%  Similarity=0.092  Sum_probs=58.1

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc--c-CCCC-CCCeEEEee
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE--Q-IPIQ-TPHLIIGMH  129 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~--~-~~~~-~p~R~i~~H  129 (269)
                      .++. +++|+++.+|  +|+.++|...+.+  +-+.+++.+.++++ +| .|+|.-. .++.  + ..+. ..-+..++|
T Consensus       189 ~~~~-~l~e~l~~aD--iVil~vp~~~~t~--~~i~~~~~~~mk~g-il-in~srg~-~vd~~aL~~aL~~~~i~gaglD  260 (333)
T 2d0i_A          189 ARYM-DIDELLEKSD--IVILALPLTRDTY--HIINEERVKKLEGK-YL-VNIGRGA-LVDEKAVTEAIKQGKLKGYATD  260 (333)
T ss_dssp             EEEC-CHHHHHHHCS--EEEECCCCCTTTT--TSBCHHHHHHTBTC-EE-EECSCGG-GBCHHHHHHHHHTTCBCEEEES
T ss_pred             ceec-CHHHHHhhCC--EEEEcCCCChHHH--HHhCHHHHhhCCCC-EE-EECCCCc-ccCHHHHHHHHHcCCceEEEec
Confidence            5554 8999997766  9999999998877  76666666677888 55 5665542 3332  1 2332 234558999


Q ss_pred             ccC--CCC---CCcEE-EEeCCCCCCH
Q psy9059         130 YFS--PVD---KMQLL-EIITTEQTSQ  150 (269)
Q Consensus       130 ffn--P~~---~~~lV-Eiv~~~~Ts~  150 (269)
                      +|+  |..   +..+. .++-+|.++.
T Consensus       261 v~~~EP~~~~~L~~~~~nviltPh~~~  287 (333)
T 2d0i_A          261 VFEKEPVREHELFKYEWETVLTPHYAG  287 (333)
T ss_dssp             CCSSSSCSCCGGGGCTTTEEECCSCTT
T ss_pred             CCCCCCCCCchHHcCCCCEEEcCccCC
Confidence            998  643   55555 6776665543

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=90.57  E-value=0.88  Score=41.24  Aligned_cols=136  Identities=13%  Similarity=0.092  Sum_probs=84.0

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHH----HHhcCCC-CcEEecCCCCCccccccc----C--CCC
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSER----IYMYTYS-ERLMGSNGLAMVFPLQEQ----I--PIQ  120 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~----l~~~~~~-~~iiaSnTS~l~~p~~~~----~--~~~  120 (269)
                      .+++.+++++|++.++|  +|+.+||.  ...  .+++.+    |..++++ +++|.|.++++.  ....    +  ...
T Consensus        71 ~~~~~~~~~~~~~~~aD--vVilav~~--~~~--~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~--~~~~~~~~~~l~~~  142 (366)
T 1evy_A           71 SNITFTSDVEKAYNGAE--IILFVIPT--QFL--RGFFEKSGGNLIAYAKEKQVPVLVCTKGIE--RSTLKFPAEIIGEF  142 (366)
T ss_dssp             TTEEEESCHHHHHTTCS--SEEECCCH--HHH--HHHHHHHCHHHHHHHHHHTCCEEECCCSCC--TTTCCCHHHHHTTT
T ss_pred             cceeeeCCHHHHHcCCC--EEEECCCh--HHH--HHHHHHhHHHHHHhcCccCCEEEEECCcCC--CccccCHHHHHHHH
Confidence            36788899999997766  99999997  445  788888    9888888 888888877762  2211    0  001


Q ss_pred             CCC-eEEEeeccCCCCC------C-cEEEEeCCCCCCHHHHHHHHHHHHhC--CcEEEEEeccCch--------------
Q psy9059         121 TPH-LIIGMHYFSPVDK------M-QLLEIITTEQTSQDTAASAVAVGLKQ--GKVVITVKDGPGF--------------  176 (269)
Q Consensus       121 ~p~-R~i~~HffnP~~~------~-~lVEiv~~~~Ts~e~~~~~~~~~~~l--Gk~pv~vkd~pGf--------------  176 (269)
                      .+. .+...  ..|...      . .++.+.   ..+++..+.+..++...  |..+....|..+.              
T Consensus       143 ~~~~~~~v~--~gp~~~~~~~~g~~~~~~~~---~~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~  217 (366)
T 1evy_A          143 LPSPLLSVL--AGPSFAIEVATGVFTCVSIA---SADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGS  217 (366)
T ss_dssp             SCGGGEEEE--ESSCCHHHHHTTCCEEEEEE---CSSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEE--eCCChHHHHHhCCceEEEEe---cCCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHH
Confidence            121 12211  223221      1 122322   23678889999999988  7766555553321              


Q ss_pred             --------hHH---HHHHHHHHHHHHHHH-cCCCHH
Q psy9059         177 --------YTT---RILSTMLSEAMRILQ-EGTSPK  200 (269)
Q Consensus       177 --------I~n---Rll~al~~EA~~lv~-eGis~e  200 (269)
                              .-|   .+....++|++.+.+ .|++++
T Consensus       218 ~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~~  253 (366)
T 1evy_A          218 GVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGS  253 (366)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred             HHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence                    112   345577889888865 788443

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=90.22  E-value=0.22  Score=48.61  Aligned_cols=100  Identities=10%  Similarity=0.099  Sum_probs=73.9

Q ss_pred             cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccC----CCCCCCeEEEeeccCC
Q psy9059          58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQI----PIQTPHLIIGMHYFSP  133 (269)
Q Consensus        58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~----~~~~p~R~i~~HffnP  133 (269)
                      .|++|++.+||  +|+=++|-.  .-  .+++.+|.++++++++| |-.+|+  ++..+.    .....-+++-+||=.|
T Consensus       113 ~s~aEAa~~AD--VVILaVP~~--~~--~eVl~eI~p~LK~GaIL-s~AaGf--~I~~le~~~i~~p~dv~VVrVmPNtP  183 (525)
T 3fr7_A          113 GDIWETVSGSD--LVLLLISDA--AQ--ADNYEKIFSHMKPNSIL-GLSHGF--LLGHLQSAGLDFPKNISVIAVCPKGM  183 (525)
T ss_dssp             EEHHHHHHHCS--EEEECSCHH--HH--HHHHHHHHHHSCTTCEE-EESSSH--HHHHHHHTTCCCCTTSEEEEEEESSC
T ss_pred             CCHHHHHhcCC--EEEECCChH--HH--HHHHHHHHHhcCCCCeE-EEeCCC--CHHHHhhhcccCCCCCcEEEEecCCC
Confidence            58999998877  999999873  23  46899999999999997 777777  444321    2333348999999888


Q ss_pred             CCC---------------Cc-EEEEeCCCCCCHHHHHHHHHHHHhCCcEEE
Q psy9059         134 VDK---------------MQ-LLEIITTEQTSQDTAASAVAVGLKQGKVVI  168 (269)
Q Consensus       134 ~~~---------------~~-lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv  168 (269)
                      ...               ++ ++-+  +...+.+..+.+.+++..+|...+
T Consensus       184 g~~VR~~y~~G~~~~g~Gv~~liAv--~qd~tgea~e~alala~aiG~~~v  232 (525)
T 3fr7_A          184 GPSVRRLYVQGKEINGAGINSSFAV--HQDVDGRATDVALGWSVALGSPFT  232 (525)
T ss_dssp             HHHHHHHHHHHTTSTTCSCCEEEEE--EECSSSCHHHHHHHHHHHTTCSEE
T ss_pred             chhHHHHHhcccccccCCccEEEEc--CCCCCHHHHHHHHHHHHHCCCCee
Confidence            764               55 4333  334566788999999999998754

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=89.98  E-value=0.2  Score=44.97  Aligned_cols=145  Identities=13%  Similarity=0.132  Sum_probs=91.2

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcE-EecCCCCCcccccc-c-CCC-CCCCeEEE
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERL-MGSNGLAMVFPLQE-Q-IPI-QTPHLIIG  127 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~i-iaSnTS~l~~p~~~-~-~~~-~~p~R~i~  127 (269)
                      .+.+.++|++|+++.+|  .|+=++|..-..+  .-+...+.....++.| |-.||++.  ..+. + +.+ .+     +
T Consensus        47 ~G~~~~~s~~e~~~~~d--vvi~~l~~~~~~~--~v~~~~~~~~~~~~~iiid~sT~~p--~~~~~~~~~~~~~-----g  115 (297)
T 4gbj_A           47 LGATVVENAIDAITPGG--IVFSVLADDAAVE--ELFSMELVEKLGKDGVHVSMSTISP--ETSRQLAQVHEWY-----G  115 (297)
T ss_dssp             TTCEECSSGGGGCCTTC--EEEECCSSHHHHH--HHSCHHHHHHHCTTCEEEECSCCCH--HHHHHHHHHHHHT-----T
T ss_pred             cCCeEeCCHHHHHhcCC--ceeeeccchhhHH--HHHHHHHHhhcCCCeEEEECCCCCh--HHHHHHHHHHHhc-----C
Confidence            45688999999998877  9999999866665  5555666666666554 44555542  1222 2 111 12     2


Q ss_pred             eecc-CCCCCC-------cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch-----hHHHHH----HHHHHHHH
Q psy9059         128 MHYF-SPVDKM-------QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF-----YTTRIL----STMLSEAM  190 (269)
Q Consensus       128 ~Hff-nP~~~~-------~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf-----I~nRll----~al~~EA~  190 (269)
                      .||. .|+.-.       .+. ++.+  -+++.++++..+++.+|+..+++.+.+|-     ++|-++    ...+.|++
T Consensus       116 ~~~ldapVsGg~~~a~~g~l~-im~g--G~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~  192 (297)
T 4gbj_A          116 AHYVGAPIFARPEAVRAKVGN-ICLS--GNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAF  192 (297)
T ss_dssp             CEEEECCEECCHHHHHHTCCE-EEEE--ECHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceecCCcCCCccccccccce-eecc--cchhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332 232211       122 2222  36789999999999999998888655542     233333    45668998


Q ss_pred             HHHH-cCCCHHHHHHHHH-hcC
Q psy9059         191 RILQ-EGTSPKDLDRLTK-QFG  210 (269)
Q Consensus       191 ~lv~-eGis~edID~a~~-g~G  210 (269)
                      .+.+ .|++++.+=.++. +.+
T Consensus       193 ~la~~~Gld~~~~~~~l~~~~~  214 (297)
T 4gbj_A          193 TMAEKNGISRQSIYEMLTSTLF  214 (297)
T ss_dssp             HHHHHTTCCHHHHHHHHHTTTT
T ss_pred             HHHHHcCCCHHHHHHHHHhhcc
Confidence            8765 7889988877776 554

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=89.78  E-value=0.09  Score=47.60  Aligned_cols=69  Identities=17%  Similarity=0.303  Sum_probs=47.0

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEee--------------cCCCcCCCchhHHHHHHHhcCCCCc--EEecCCCCCccccc
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFP--------------LQEQIPIQTPQQMSERIYMYTYSER--LMGSNGLAMVFPLQ  114 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~--------------vpE~l~~K~k~~l~~~l~~~~~~~~--iiaSnTS~l~~p~~  114 (269)
                      ..+++.+.++ +|++|||  +|+++              +.++.+++  +++.++|.+++ |++  |+.||....   ++
T Consensus        53 ~~~i~~t~d~-~a~~~aD--~Vi~~ag~~~k~G~~r~dl~~~n~~i~--~~i~~~i~~~~-p~a~iiv~tNPv~~---~t  123 (308)
T 2d4a_B           53 DIRISGSNSY-EDMRGSD--IVLVTAGIGRKPGMTREQLLEANANTM--ADLAEKIKAYA-KDAIVVITTNPVDA---MT  123 (308)
T ss_dssp             CCCEEEESCG-GGGTTCS--EEEECCSCCCCSSCCTHHHHHHHHHHH--HHHHHHHHHHC-TTCEEEECCSSHHH---HH
T ss_pred             CeEEEECCCH-HHhCCCC--EEEEeCCCCCCCCCcHHHHHHHHHHHH--HHHHHHHHHHC-CCeEEEEeCCchHH---HH
Confidence            3567776787 7897777  99999              34455567  99999999998 676  677885543   22


Q ss_pred             cc--CCCCC-CCeEEEe
Q psy9059         115 EQ--IPIQT-PHLIIGM  128 (269)
Q Consensus       115 ~~--~~~~~-p~R~i~~  128 (269)
                      .+  ..... |.|++|+
T Consensus       124 ~~~~k~~~~p~~rviG~  140 (308)
T 2d4a_B          124 YVMYKKTGFPRERVIGF  140 (308)
T ss_dssp             HHHHHHHCCCGGGEEEC
T ss_pred             HHHHHhcCCChhhEEEe
Confidence            21  11122 5688877

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=89.71  E-value=1.1  Score=39.61  Aligned_cols=142  Identities=10%  Similarity=0.040  Sum_probs=83.4

Q ss_pred             CeEEec--CHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC---cc-ccccc-CCCC--CCC
Q psy9059          53 GITYLY--TYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM---VF-PLQEQ-IPIQ--TPH  123 (269)
Q Consensus        53 ~l~~~~--~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l---~~-p~~~~-~~~~--~p~  123 (269)
                      +++..+  +++|++.++|  +|+-++|..  ..  .+++.+|.+ ++++++|.+.+.++   .. ....+ +...  .+.
T Consensus        56 ~~~~~~~~~~~~~~~~~D--~vi~~v~~~--~~--~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~  128 (335)
T 1txg_A           56 GVEIFWPEQLEKCLENAE--VVLLGVSTD--GV--LPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDL  128 (335)
T ss_dssp             SEEEECGGGHHHHHTTCS--EEEECSCGG--GH--HHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTC
T ss_pred             ceEEecHHhHHHHHhcCC--EEEEcCChH--HH--HHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCC
Confidence            456777  8999987766  999999986  45  789999998 88888777665443   10 11111 1111  121


Q ss_pred             eEEEeeccCCCCCC-----cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCch----------------------
Q psy9059         124 LIIGMHYFSPVDKM-----QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGF----------------------  176 (269)
Q Consensus       124 R~i~~HffnP~~~~-----~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGf----------------------  176 (269)
                      +........|....     ....++.+. .+++..+.+.++++..|..+....|..+.                      
T Consensus       129 ~~~~~~~~~p~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~  207 (335)
T 1txg_A          129 RERTVAITGPAIAREVAKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYES  207 (335)
T ss_dssp             GGGEEEEESSCCHHHHHTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            00111123443321     001233333 35788899999999999877666553210                      


Q ss_pred             h-----HH---HHHHHHHHHHHHHHH-cCCCHHHH
Q psy9059         177 Y-----TT---RILSTMLSEAMRILQ-EGTSPKDL  202 (269)
Q Consensus       177 I-----~n---Rll~al~~EA~~lv~-eGis~edI  202 (269)
                      .     .|   .+....++|+..+.+ .|++++++
T Consensus       208 ~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~  242 (335)
T 1txg_A          208 RKNVEMSNAKGVIATRAINEMAELIEILGGDRETA  242 (335)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence            1     12   345677888887765 68855433

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=88.99  E-value=0.34  Score=43.59  Aligned_cols=145  Identities=13%  Similarity=0.140  Sum_probs=90.2

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHH---HHhcCCC-CcEEecCCCCCcccccc-c-CCCCCCCeEE
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSER---IYMYTYS-ERLMGSNGLAMVFPLQE-Q-IPIQTPHLII  126 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~---l~~~~~~-~~iiaSnTS~l~~p~~~-~-~~~~~p~R~i  126 (269)
                      +.+.++|++|+++++|  .|+=|+|..-.++  . ++..   +.+.+++ .++|-.+|++.  ..+. + +.+...    
T Consensus        46 Ga~~a~s~~e~~~~~d--vv~~~l~~~~~v~--~-V~~~~~g~~~~~~~g~iiId~sT~~p--~~~~~~a~~~~~~----  114 (300)
T 3obb_A           46 GASAARSARDAVQGAD--VVISMLPASQHVE--G-LYLDDDGLLAHIAPGTLVLECSTIAP--TSARKIHAAARER----  114 (300)
T ss_dssp             TCEECSSHHHHHTTCS--EEEECCSCHHHHH--H-HHHSSSSSTTSCCC-CEEEECSCCCH--HHHHHHHHHHHTT----
T ss_pred             CCEEcCCHHHHHhcCC--ceeecCCchHHHH--H-HHhchhhhhhcCCCCCEEEECCCCCH--HHHHHHHHHHHHc----
Confidence            4678899999998877  9999999876665  3 4332   3344444 45556666653  1222 2 122111    


Q ss_pred             Eeecc-CCCCCC-------cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-Cch---hHHHHH----HHHHHHHH
Q psy9059         127 GMHYF-SPVDKM-------QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-PGF---YTTRIL----STMLSEAM  190 (269)
Q Consensus       127 ~~Hff-nP~~~~-------~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-pGf---I~nRll----~al~~EA~  190 (269)
                      +.||. -|+.--       .|.=++.|   +++++++++.+++.+|+..+++.+. .|.   ++|-++    ...+.||+
T Consensus       115 G~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~  191 (300)
T 3obb_A          115 GLAMLDAPVSGGTAGAAAGTLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAM  191 (300)
T ss_dssp             TCEEEECCEESCHHHHHHTCEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCCCHHHHHhCCEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33443 233221       23434554   6799999999999999999888542 222   233332    34567888


Q ss_pred             HHHH-cCCCHHHHHHHHH-hcCC
Q psy9059         191 RILQ-EGTSPKDLDRLTK-QFGF  211 (269)
Q Consensus       191 ~lv~-eGis~edID~a~~-g~G~  211 (269)
                      .+.+ .|++++.+=.++. +.|.
T Consensus       192 ~la~~~Gld~~~~~~vl~~~~~~  214 (300)
T 3obb_A          192 ALGVANGLEAKVLAEIMRRSSGG  214 (300)
T ss_dssp             HHHHHTTCCHHHHHHHHHTSTTC
T ss_pred             HHHHhcCCCHHHHHHHHHhCccc
Confidence            8865 7889998887776 5543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=87.70  E-value=7  Score=36.97  Aligned_cols=145  Identities=8%  Similarity=-0.032  Sum_probs=85.1

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcC--------CCchhHHHHHHHhcCCCCcEEecCCCCCcccccc-c-C---
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIP--------IQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-Q-I---  117 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~--------~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~-~---  117 (269)
                      .+++++++++    ++  ||.|+=|||-..+        ++.=.+..+.|.+++++++++- ..||.+.-.++ + .   
T Consensus        72 ~g~l~~ttd~----~~--aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV-~~STV~pgtt~~v~~~i~  144 (431)
T 3ojo_A           72 SGKLKVSTTP----EA--SDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTII-VESTIAPKTMDDFVKPVI  144 (431)
T ss_dssp             TTCEEEESSC----CC--CSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEE-ECSCCCTTHHHHTHHHHH
T ss_pred             cCceEEeCch----hh--CCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEE-EecCCChhHHHHHHHHHH
Confidence            4789999874    34  5599999987553        2211344577888888887654 33444211111 2 1   


Q ss_pred             ---CCCCCCeEEEeeccCCCCCCcEE---------EEeCCCCCCHHHHHHHHHHHHhCCcEEEEEecc-Cc----hhHHH
Q psy9059         118 ---PIQTPHLIIGMHYFSPVDKMQLL---------EIITTEQTSQDTAASAVAVGLKQGKVVITVKDG-PG----FYTTR  180 (269)
Q Consensus       118 ---~~~~p~R~i~~HffnP~~~~~lV---------Eiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~-pG----fI~nR  180 (269)
                         +.....++-.+  ++|..+.+--         =||.|.  +++..+++..+++.+++.++++.+. .|    .+.|-
T Consensus       145 e~~g~~~~~d~~v~--~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~  220 (431)
T 3ojo_A          145 ENLGFTIGEDIYLV--HCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENT  220 (431)
T ss_dssp             HTTTCCBTTTEEEE--ECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             HHcCCCcCCCeEEE--ECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHH
Confidence               11111223333  3564432210         134443  6899999999999999877776431 11    22333


Q ss_pred             HH---HHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059         181 IL---STMLSEAMRILQ-EGTSPKDLDRLT  206 (269)
Q Consensus       181 ll---~al~~EA~~lv~-eGis~edID~a~  206 (269)
                      ++   .+++||+..+.+ -|++++++=.++
T Consensus       221 ~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~  250 (431)
T 3ojo_A          221 YRDVNIALANELTKICNNLNINVLDVIEMA  250 (431)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            32   567899998876 688888877766

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=87.45  E-value=0.93  Score=42.61  Aligned_cols=62  Identities=8%  Similarity=0.000  Sum_probs=51.1

Q ss_pred             hhcccccCCCCCCCcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059          38 YALCTTVPLVSTSHTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM  109 (269)
Q Consensus        38 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l  109 (269)
                      ..+|.++.+|+    +|+++++++|+++++|  +|+-+||=  ..=  +++++++..+.++++++-|-|=|+
T Consensus        93 ~~YLpgv~Lp~----~i~~t~dl~~al~~ad--~ii~avPs--~~~--r~~l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A           93 VKYLPGITLPD----NLVANPDLIDSVKDVD--IIVFNIPH--QFL--PRICSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTTBTTCCCCS----SEEEESCHHHHHTTCS--EEEECSCG--GGH--HHHHHHHTTTSCTTCEEEECCCSC
T ss_pred             cccCCCCcCCC----CcEEeCCHHHHHhcCC--EEEEECCh--hhh--HHHHHHhccccCCCceeEEecccc
Confidence            44566778876    7999999999998877  99999997  223  678999999999999998887666

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=84.77  E-value=1.3  Score=39.52  Aligned_cols=111  Identities=12%  Similarity=0.016  Sum_probs=66.1

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccc-c-CCCCCCCeEEEe--
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQE-Q-IPIQTPHLIIGM--  128 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~-~-~~~~~p~R~i~~--  128 (269)
                      +++.+++.++ +.+  +|+|+.+||..  .-  ++++++|..+++++++|.|.+.++  ...+ + +...  +++++.  
T Consensus        74 ~~~~~~~~~~-~~~--~D~vilavk~~--~~--~~~l~~l~~~l~~~~~iv~~~nGi--~~~~~l~~~~~--~~vl~g~~  142 (318)
T 3hwr_A           74 KVSASSDPSA-VQG--ADLVLFCVKST--DT--QSAALAMKPALAKSALVLSLQNGV--ENADTLRSLLE--QEVAAAVV  142 (318)
T ss_dssp             CCEEESCGGG-GTT--CSEEEECCCGG--GH--HHHHHHHTTTSCTTCEEEEECSSS--SHHHHHHHHCC--SEEEEEEE
T ss_pred             eeeeeCCHHH-cCC--CCEEEEEcccc--cH--HHHHHHHHHhcCCCCEEEEeCCCC--CcHHHHHHHcC--CcEEEEEE
Confidence            4556677654 555  45999999986  33  688999999999999999999998  3322 2 2222  555532  


Q ss_pred             -e---ccCCCCCCcEEEE-----eCCCCCCHHHHHHHHHHHHhCCcEEEEEeccCchhHHH
Q psy9059         129 -H---YFSPVDKMQLLEI-----ITTEQTSQDTAASAVAVGLKQGKVVITVKDGPGFYTTR  180 (269)
Q Consensus       129 -H---ffnP~~~~~lVEi-----v~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~pGfI~nR  180 (269)
                       +   ...|-.   ..|+     .-+.   .+..+.+.+++...|..+....|.-+.....
T Consensus       143 ~~~a~~~gP~~---~~~~~~g~~~ig~---~~~~~~l~~~l~~~~~~~~~~~Di~~~~w~K  197 (318)
T 3hwr_A          143 YVATEMAGPGH---VRHHGRGELVIEP---TSHGANLAAIFAAAGVPVETSDNVRGALWAK  197 (318)
T ss_dssp             EEEEEEEETTE---EEEEEEEEEEECC---CTTTHHHHHHHHHTTCCEEECSCHHHHHHHH
T ss_pred             EEeEEEcCCeE---EEEcCCceEEEcC---CHHHHHHHHHHHhCCCCcEechHHHHHHHHH
Confidence             1   112321   1121     1122   2334566677777777665556654433333

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=84.40  E-value=2.4  Score=38.01  Aligned_cols=49  Identities=4%  Similarity=-0.038  Sum_probs=37.0

Q ss_pred             eEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCC
Q psy9059          54 ITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAM  109 (269)
Q Consensus        54 l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l  109 (269)
                      ++..++.++ +.++|  +|+-|||.. + -  .+++++|..+++++++|.|-+.++
T Consensus        59 ~~~~~~~~~-~~~~D--~Vilavk~~-~-~--~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           59 VRATHDAAA-LGEQD--VVIVAVKAP-A-L--ESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CEEESCHHH-HCCCS--EEEECCCHH-H-H--HHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             eeEECCHHH-cCCCC--EEEEeCCch-h-H--HHHHHHHHhhCCCCCEEEEECCCC
Confidence            456677776 55555  999999873 2 2  467788888889999999888885

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=82.52  E-value=16  Score=34.72  Aligned_cols=150  Identities=7%  Similarity=-0.037  Sum_probs=82.1

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCC------CcCCCchhHHHHHHHhcCC----CCcEEecCCCCCccccccc----
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQE------QIPIQTPQQMSERIYMYTY----SERLMGSNGLAMVFPLQEQ----  116 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE------~l~~K~k~~l~~~l~~~~~----~~~iiaSnTS~l~~p~~~~----  116 (269)
                      .|+|+|+++.++|+.++|  .++=|||=      +.|+.-=.+..+.|.+++.    .+.|+--||.--. ...++    
T Consensus        82 ~g~l~~tt~~~~ai~~ad--~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppG-tte~~~~~~  158 (444)
T 3vtf_A           82 SGRLSFAESAEEAVAATD--ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPG-TTEGLVARA  158 (444)
T ss_dssp             TTCEEECSSHHHHHHTSS--EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTT-TTTTHHHHH
T ss_pred             cCCeeEEcCHHHHHhcCC--ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCc-hHHHHHHHH
Confidence            589999999999998877  88889862      3344311344566666653    3556665554211 11111    


Q ss_pred             -CCCCCCCeEEEeeccCCCCCCcE--E-------EEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe----ccCchhHHHH-
Q psy9059         117 -IPIQTPHLIIGMHYFSPVDKMQL--L-------EIITTEQTSQDTAASAVAVGLKQGKVVITVK----DGPGFYTTRI-  181 (269)
Q Consensus       117 -~~~~~p~R~i~~HffnP~~~~~l--V-------Eiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk----d~pGfI~nRl-  181 (269)
                       +....-.+|-+.  |||-.+.|=  +       =||-| .++++..+.+.++++.+....++..    |.--.+.|-. 
T Consensus       159 l~~~~~~~~f~v~--~~PErl~eG~a~~d~~~~~riViG-~~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~r  235 (444)
T 3vtf_A          159 VAEEAGGVKFSVA--SNPEFLREGSALEDFFKPDRIVIG-AGDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFL  235 (444)
T ss_dssp             HHTTTTTCCCEEE--ECCCCCCTTSHHHHHHSCSCEEEE-ESSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCceee--cCcccccCCccccccccCCcEEEc-CCCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHH
Confidence             111111222222  234332210  0       02222 2567888888999988765444332    1111233332 


Q ss_pred             --HHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy9059         182 --LSTMLSEAMRILQ-EGTSPKDLDRLT  206 (269)
Q Consensus       182 --l~al~~EA~~lv~-eGis~edID~a~  206 (269)
                        --+++||...+.+ -|+++.++=.++
T Consensus       236 avnIa~~NEla~ice~~GiDv~eV~~a~  263 (444)
T 3vtf_A          236 ALKISFANEVGLLAKRLGVDTYRVFEAV  263 (444)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence              3578899988876 588777766554

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=80.57  E-value=0.36  Score=43.59  Aligned_cols=46  Identities=13%  Similarity=0.137  Sum_probs=32.9

Q ss_pred             cCHHHHhcCCCCceEEeec--------------CCCcCCCchhHHHHHHHhcCCCCc--EEecCCCC
Q psy9059          58 YTYSERLMGSNGLAMVFPL--------------QEQIPIQTPQQMSERIYMYTYSER--LMGSNGLA  108 (269)
Q Consensus        58 ~~~~~a~~~~~~~~V~E~v--------------pE~l~~K~k~~l~~~l~~~~~~~~--iiaSnTS~  108 (269)
                      .+..++++|||  +|+.++              .++.++|  +++.+++.+++ |++  ++.||...
T Consensus        66 ~~~~~al~~aD--vViia~~~~~~~g~~r~dl~~~n~~i~--~~i~~~i~~~~-p~a~~iv~tNPv~  127 (316)
T 1ldn_A           66 HGDYDDCRDAD--LVVICAGANQKPGETRLDLVDKNIAIF--RSIVESVMASG-FQGLFLVATNPVD  127 (316)
T ss_dssp             ECCGGGTTTCS--EEEECCSCCCCTTTCSGGGHHHHHHHH--HHHHHHHHHHT-CCSEEEECSSSHH
T ss_pred             cCcHHHhCCCC--EEEEcCCCCCCCCCCHHHHHHcChHHH--HHHHHHHHHHC-CCCEEEEeCCchH
Confidence            35567887766  999995              3333556  99999999998 565  66677543

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=80.49  E-value=0.15  Score=49.33  Aligned_cols=25  Identities=0%  Similarity=0.041  Sum_probs=21.6

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecC
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQ   77 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vp   77 (269)
                      ..+++.++++.+|++|||  +|+++++
T Consensus        62 ~~~I~~ttD~~eal~dAD--~VIiaag   86 (480)
T 1obb_A           62 DLKFEKTMNLDDVIIDAD--FVINTAM   86 (480)
T ss_dssp             CCEEEEESCHHHHHTTCS--EEEECCC
T ss_pred             CcEEEEECCHHHHhCCCC--EEEECCC
Confidence            467888899999998877  9999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	3e-14
d1f0ya1	99	a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl	5e-12
d1f0ya2	192	c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA	7e-12
d1wdka3	186	c.2.1.6 (A:311-496) Fatty oxidation complex alpha	1e-11
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	6e-08

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 65.6 bits (159), Expect = 3e-14
 Identities = 28/94 (29%), Positives = 47/94 (50%)

Query: 175 GFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDL 234
           GF   R+L        +++  G     +D++ ++FG+P+G A L D VGID G H    +
Sbjct: 1   GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVM 60

Query: 235 SKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
           ++ F DR      + ++ + E   L  KN  G+Y
Sbjct: 61  AEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFY 94

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 5e-12
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 175 GFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFG--FPVGAATLSDEVGIDVGAHIAK 232
           GF   R+L   L EA+R+ + G + K+      + G  +P+G   L D VG+D    I  
Sbjct: 1   GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVD 60

Query: 233 DLSKTFGDRFSGGNLNVLNEMVEKGYLDFKNKDGYY 268
              +   +         LN++V +     K  +G+Y
Sbjct: 61  GWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFY 96

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 7e-12
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 80  IPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDKMQL 139
                 +                 +     +  +             G+H+F+PV  M+L
Sbjct: 100 NLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANAT--TRQDRFAGLHFFNPVPVMKL 157

Query: 140 LEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGP 174
           +E+I T  TSQ T  S V      GK  ++ KD P
Sbjct: 158 VEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTP 192

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 60.3 bits (145), Expect = 1e-11
 Identities = 23/53 (43%), Positives = 31/53 (58%)

Query: 122 PHLIIGMHYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGP 174
           P   +GMH+F+PV  M L+E+I  E++S    A+ VA   K GK  I V D P
Sbjct: 134 PENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCP 186

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 180 RILSTMLSEAMRILQEGTSPKDLDR---LTKQFGFPV---GAATLSDEVGIDVGAHIAKD 233
            ++  +  E +R L++G      +    L    GFP+   GA    D +G+     +A  
Sbjct: 10  WMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQ 69

Query: 234 LSKTFGDRFSGGNLNVLNEMVEKG 257
            ++  G  +       L EM + G
Sbjct: 70  YAE-LGALYHPTAK--LREMAKNG 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	100.0
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.98
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.95
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.94
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.85
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.1
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.87
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.24
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.76
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	93.52
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.08
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	89.88
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	86.57
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	83.44

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-34  Score=249.22  Aligned_cols=118  Identities=23%  Similarity=0.351  Sum_probs=112.9

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      -++++++.++.+++.++|  ||||||+|++++|  +++|++|++++++++||+||||++  +++++ ..+.+|+||+|+|
T Consensus        74 l~~i~~~~d~~~a~~~ad--~ViEav~E~l~~K--~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~ig~H  147 (192)
T d1f0ya2          74 LSTIATSTDAASVVHSTD--LVVEAIVENLKVK--NELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQDRFAGLH  147 (192)
T ss_dssp             HHTEEEESCHHHHTTSCS--EEEECCCSCHHHH--HHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGGGEEEEE
T ss_pred             HhhccccchhHhhhcccc--eehhhcccchhHH--HHHHHHHhhhcccCceeeccCccc--ccchhhhhccCHhHEEeec
Confidence            378999999999998777  9999999999999  999999999999999999999998  78785 7899999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccC
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGP  174 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~p  174 (269)
                      |||||+++|||||++|+.|++++++.+.+|++.+||.|++++|.|
T Consensus       148 ffnP~~~~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P  192 (192)
T d1f0ya2         148 FFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTP  192 (192)
T ss_dssp             ECSSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             cccccCcccEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence            999999999999999999999999999999999999999999987

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.98  E-value=3e-33  Score=238.57  Aligned_cols=117  Identities=26%  Similarity=0.404  Sum_probs=108.3

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEee
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMH  129 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~H  129 (269)
                      -++|++..+++ ++.++|  +||||+||++++|  +++|++|+++++++|||+||||++  +++++ +.+.+|+||+|+|
T Consensus        69 ~~~i~~~~~~~-~~~~ad--lViEav~E~l~~K--~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~~p~r~~g~H  141 (186)
T d1wdka3          69 LNGIRPTLSYG-DFGNVD--LVVEAVVENPKVK--QAVLAEVENHVREDAILASNTSTI--SISLLAKALKRPENFVGMH  141 (186)
T ss_dssp             HHHEEEESSST-TGGGCS--EEEECCCSCHHHH--HHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSCGGGEEEEE
T ss_pred             hceeecccccc-cccccc--eeeeeecchHHHH--HHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhccCchheEeec
Confidence            35688877765 576655  9999999999999  999999999999999999999999  78885 6899999999999


Q ss_pred             ccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEeccC
Q psy9059         130 YFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITVKDGP  174 (269)
Q Consensus       130 ffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vkd~p  174 (269)
                      |||||+.+||||||+|++|++++++.+.+|++++||.|++++|.|
T Consensus       142 f~nP~~~~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~P  186 (186)
T d1wdka3         142 FFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCP  186 (186)
T ss_dssp             CCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             cccCcccCCeEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEeccC
Confidence            999999999999999999999999999999999999999999987

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.5e-29  Score=190.93  Aligned_cols=93  Identities=30%  Similarity=0.513  Sum_probs=87.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHH-hcCCCchhhHHHHhhchHHHHHHHHHHHHHhCC--CCCCChhHHH
Q psy9059         175 GFYTTRILSTMLSEAMRILQEGT-SPKDLDRLTK-QFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGD--RFSGGNLNVL  250 (269)
Q Consensus       175 GfI~nRll~al~~EA~~lv~eGi-s~edID~a~~-g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~--~~~~~~~~lL  250 (269)
                      |||+||++.+++|||+++++||+ |++|||++++ ++|+|+|||+++|.+|+|++.++++++.+..++  ++.  +++++
T Consensus         1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vGld~~~~v~~~~~~~~~~~~~~~--~~~~l   78 (99)
T d1f0ya1           1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQ--PSPSL   78 (99)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTCGGGC--CCHHH
T ss_pred             CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhcHHHHHHHHHHHHHhcccccccC--CCHHH
Confidence            89999999999999999999999 9999999998 999999999999999999999999999888765  455  67899


Q ss_pred             HHHHHcCCCCCCCCCccCC
Q psy9059         251 NEMVEKGYLDFKNKDGYYP  269 (269)
Q Consensus       251 ~~lv~~G~lG~ksG~GFY~  269 (269)
                      ++|+++|++|+|||+|||+
T Consensus        79 ~~mv~~g~lG~ksg~GfY~   97 (99)
T d1f0ya1          79 NKLVAENKFGKKTGEGFYK   97 (99)
T ss_dssp             HHHHHTTCCBTTTTBSSSB
T ss_pred             HHHHHcCCCcccCCCcccc
Confidence            9999999999999999995

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.94  E-value=8.3e-28  Score=192.98  Aligned_cols=95  Identities=29%  Similarity=0.566  Sum_probs=87.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCchhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhHHHHHHH
Q psy9059         175 GFYTTRILSTMLSEAMRILQEGTSPKDLDRLTKQFGFPVGAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLNVLNEMV  254 (269)
Q Consensus       175 GfI~nRll~al~~EA~~lv~eGis~edID~a~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~lL~~lv  254 (269)
                      |||+|||+.++++||++|+++|+++++||++++++|+|+|||+++|++|+|++.++++.+.+.++++....+++++++|+
T Consensus         1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vGLd~~~~v~~~~~~~~~~~~~~~~~~~l~~mv   80 (124)
T d1wdka1           1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALY   80 (124)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHHHHCCSSCCHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcchHHHHHHHHHHHHhcCcccccCcchHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999998887532222567999999


Q ss_pred             HcCCCCCCCCCccCC
Q psy9059         255 EKGYLDFKNKDGYYP  269 (269)
Q Consensus       255 ~~G~lG~ksG~GFY~  269 (269)
                      ++|++|+|||+|||+
T Consensus        81 ~~g~lG~Ktg~GFY~   95 (124)
T d1wdka1          81 EAKRLGQKNGKGFYA   95 (124)
T ss_dssp             HTTCCBTTTTBSSSE
T ss_pred             HcCCccccCCcEeeE
Confidence            999999999999994

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.85  E-value=8.8e-22  Score=150.77  Aligned_cols=84  Identities=23%  Similarity=0.398  Sum_probs=77.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-hcCCCc---hhhHHHHhhchHHHHHHHHHHHHHhCCCCCCChhH
Q psy9059         175 GFYTTRILSTMLSEAMRILQEGT--SPKDLDRLTK-QFGFPV---GAATLSDEVGIDVGAHIAKDLSKTFGDRFSGGNLN  248 (269)
Q Consensus       175 GfI~nRll~al~~EA~~lv~eGi--s~edID~a~~-g~G~p~---GPf~~~D~~Gld~~~~~~~~l~~~~g~~~~~~~~~  248 (269)
                      .-|+||++.+++|||++++++||  |++|||.+++ |+|||+   |||+++|.+|++.+.+.++.+. ++|++|+  |++
T Consensus         5 ~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G~~~~~~~~~~l~-~~g~r~~--p~~   81 (95)
T d1wdka2           5 EDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYA-ELGALYH--PTA   81 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHTG-GGCGGGC--CCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHCHHHHHHHHHHHH-hhCCCCC--CCH
Confidence            45999999999999999999997  8999999998 999999   9999999999999999999885 5899998  679


Q ss_pred             HHHHHHHcCCCCCCCCCccC
Q psy9059         249 VLNEMVEKGYLDFKNKDGYY  268 (269)
Q Consensus       249 lL~~lv~~G~lG~ksG~GFY  268 (269)
                      +|++|+       |+|+|||
T Consensus        82 ~L~~~~-------~~g~~Fy   94 (95)
T d1wdka2          82 KLREMA-------KNGQSFF   94 (95)
T ss_dssp             HHHHHH-------HTTCCSC
T ss_pred             HHHHHH-------HhCcCCC
Confidence            999997       5678999

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.10  E-value=1.7e-10  Score=100.85  Aligned_cols=114  Identities=9%  Similarity=0.015  Sum_probs=92.9

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCC-CCCCeEEEe
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPI-QTPHLIIGM  128 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~-~~p~R~i~~  128 (269)
                      +.++++++|..|+++++|  +|++|+|+. +.+  ++++++|.+++++++||...||.-......+ +.+ ++.-+++++
T Consensus       126 e~Gv~v~~d~~Eav~~AD--iII~~vP~~-~~v--~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~  200 (242)
T d2b0ja2         126 DVGLKVTSDDREAVEGAD--IVITWLPKG-NKQ--PDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSY  200 (242)
T ss_dssp             GGTCEEESCHHHHHTTCS--EEEECCTTC-TTH--HHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEEC
T ss_pred             HCCCEEECCHHHHHhcCC--eEEEeeecH-HHH--HHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEECC
Confidence            678999999999998877  999999966 777  9999999999999999975555421011223 334 446799999


Q ss_pred             eccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         129 HYFSPVDKMQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       129 HffnP~~~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                      ||.++|.....+.++.+ .++++.++++.++++++||.++++
T Consensus       201 hp~a~pe~~g~~li~~~-~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         201 HPGCVPEMKGQVYIAEG-YASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             BCSSCTTTCCCEEEEES-SSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CccCcCccccceEEecC-CCCHHHHHHHHHHHHHHCCCeEeC
Confidence            99999988887777655 589999999999999999998876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.87  E-value=9.1e-06  Score=64.81  Aligned_cols=106  Identities=12%  Similarity=-0.022  Sum_probs=76.8

Q ss_pred             ecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCCCCC
Q psy9059          57 LYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDK  136 (269)
Q Consensus        57 ~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~~  136 (269)
                      ..+..|+++++|  +|+-|+|-  +.-  .++++++.++.++++++.+.+|.- .+.... ......++++.|+...+..
T Consensus        48 ~~~~~~~~~~~D--iIilavp~--~~~--~~vl~~l~~~l~~~~iv~~~~s~~-~~~~~~-~~~~~~~~~~~h~~~~~~~  119 (165)
T d2f1ka2          48 AGQDLSLLQTAK--IIFLCTPI--QLI--LPTLEKLIPHLSPTAIVTDVASVK-TAIAEP-ASQLWSGFIGGHPMAGTAA  119 (165)
T ss_dssp             EESCGGGGTTCS--EEEECSCH--HHH--HHHHHHHGGGSCTTCEEEECCSCC-HHHHHH-HHHHSTTCEEEEECCCCSC
T ss_pred             eeeecccccccc--cccccCcH--hhh--hhhhhhhhhhcccccceeeccccc-hHHHHH-HHHhhcccccceeeecccc
Confidence            345557886666  99999985  345  789999999999999998776653 122221 1122347899999655422


Q ss_pred             ------------CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEE
Q psy9059         137 ------------MQLLEIITTEQTSQDTAASAVAVGLKQGKVVITV  170 (269)
Q Consensus       137 ------------~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~v  170 (269)
                                  ...+=++++..++++.++.+.++++.+|.+.+.|
T Consensus       120 ~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~c  165 (165)
T d2f1ka2         120 QGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC  165 (165)
T ss_dssp             SSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             cchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence                        2234478889999999999999999999987654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.24  E-value=0.00018  Score=57.03  Aligned_cols=97  Identities=10%  Similarity=0.055  Sum_probs=70.5

Q ss_pred             CCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCCCC------------
Q psy9059          68 NGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVD------------  135 (269)
Q Consensus        68 ~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~------------  135 (269)
                      ++|+|+.|+|-+  .-  .+++.+|..+.++++++...+|.-. ++.+......+.|+++.||.....            
T Consensus        62 ~~dlIila~p~~--~~--~~vl~~l~~~~~~~~ii~d~~s~k~-~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf  136 (171)
T d2g5ca2          62 SPDFVMLSSPVR--TF--REIAKKLSYILSEDATVTDQGSVKG-KLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLY  136 (171)
T ss_dssp             CCSEEEECSCHH--HH--HHHHHHHHHHSCTTCEEEECCSCCT-HHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTT
T ss_pred             ccccccccCCch--hh--hhhhhhhhccccccccccccccccH-HHHHHHHHhhcccccccccccccccccHHHHHHHhh
Confidence            456999999952  23  5688899999999999998888642 333321112356899999953221            


Q ss_pred             CCcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEE
Q psy9059         136 KMQLLEIITTEQTSQDTAASAVAVGLKQGKVVIT  169 (269)
Q Consensus       136 ~~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~  169 (269)
                      --..+=|+++..|+++.++.+.+|++.+|...+.
T Consensus       137 ~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~  170 (171)
T d2g5ca2         137 EGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY  170 (171)
T ss_dssp             TTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            1233448899999999999999999999987754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.76  E-value=0.013  Score=45.65  Aligned_cols=102  Identities=10%  Similarity=0.050  Sum_probs=74.9

Q ss_pred             CeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeecc
Q psy9059          53 GITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHYF  131 (269)
Q Consensus        53 ~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hff  131 (269)
                      ++.++.+..|++.++|  +|+-||+        -+.+.++-+...++.+|-|-++++  .++.+ ..+....+++-++|-
T Consensus        44 g~~~~~~~~~~~~~~d--vIilavk--------p~~~~~vl~~l~~~~~iis~~agi--~~~~l~~~l~~~~~ivr~mPN  111 (152)
T d2ahra2          44 ALPYAMSHQDLIDQVD--LVILGIK--------PQLFETVLKPLHFKQPIISMAAGI--SLQRLATFVGQDLPLLRIMPN  111 (152)
T ss_dssp             TCCBCSSHHHHHHTCS--EEEECSC--------GGGHHHHHTTSCCCSCEEECCTTC--CHHHHHHHHCTTSCEEEEECC
T ss_pred             ceeeechhhhhhhccc--eeeeecc--------hHhHHHHhhhcccceeEecccccc--cHHHHHhhhcccccchhhccc
Confidence            4567789999998877  9998874        334555556667788888988887  55554 334445578877773


Q ss_pred             CCCCC-CcEEEEeCCCCCCHHHHHHHHHHHHhCCcE
Q psy9059         132 SPVDK-MQLLEIITTEQTSQDTAASAVAVGLKQGKV  166 (269)
Q Consensus       132 nP~~~-~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~  166 (269)
                      -|... .+..-+..+..++++..+.+.+++..+|+.
T Consensus       112 ~~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~~  147 (152)
T d2ahra2         112 MNAQILQSSTALTGNALVSQELQARVRDLTDSFGST  147 (152)
T ss_dssp             GGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEEE
T ss_pred             hhhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCCE
Confidence            33332 366778888899999999999999999974

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=93.52  E-value=0.024  Score=43.45  Aligned_cols=103  Identities=10%  Similarity=0.028  Sum_probs=69.2

Q ss_pred             cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCCCCC-
Q psy9059          58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVDK-  136 (269)
Q Consensus        58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~~-  136 (269)
                      .+.++.+.+++  +++-++|-  +.-  .+++.++....++++++.--+|.- -++.+......+.++++.||..-+.. 
T Consensus        45 ~~~~~~~~~~~--~v~~~~~~--~~~--~~v~~~~~~~~~~~~iiiD~~Svk-~~~~~~~~~~~~~~~v~~hP~~Gp~~~  117 (152)
T d2pv7a2          45 AVAESILANAD--VVIVSVPI--NLT--LETIERLKPYLTENMLLADLTSVK-REPLAKMLEVHTGAVLGLHPMFGADIA  117 (152)
T ss_dssp             GGHHHHHTTCS--EEEECSCG--GGH--HHHHHHHGGGCCTTSEEEECCSCC-HHHHHHHHHHCSSEEEEEEECSCTTCS
T ss_pred             cccchhhhhcc--ccccccch--hhh--eeeeecccccccCCceEEEecccC-HHHHHHHHHHccCCEEEecccCCCccc
Confidence            35566676666  99999985  344  778899999999999988666543 12223212234679999999543322 


Q ss_pred             ---CcEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEE
Q psy9059         137 ---MQLLEIITTEQTSQDTAASAVAVGLKQGKVVIT  169 (269)
Q Consensus       137 ---~~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~  169 (269)
                         -..+=++++  .+++.++++.++++.+|...+.
T Consensus       118 ~~~g~~~v~~~g--~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2         118 SMAKQVVVRCDG--RFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             CCTTCEEEEEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred             ccCCcEEEEecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence               234444444  4567789999999999988764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.08  E-value=0.12  Score=39.40  Aligned_cols=104  Identities=14%  Similarity=0.088  Sum_probs=74.7

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCccccccc-CCCCCCCeEEEeec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQ-IPIQTPHLIIGMHY  130 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~-~~~~~p~R~i~~Hf  130 (269)
                      ..++..++.++ +..+  |+|+=||+       ++++-.-+.++.+.+.++-|-.++.  +++.+ ..+....+++.++|
T Consensus        44 ~~~~~~~~~~~-v~~~--Div~lavk-------P~~~~~v~~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~mp  111 (152)
T d1yqga2          44 LGVETSATLPE-LHSD--DVLILAVK-------PQDMEAACKNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRVMP  111 (152)
T ss_dssp             TCCEEESSCCC-CCTT--SEEEECSC-------HHHHHHHHTTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEEEC
T ss_pred             ccccccccccc-cccc--ceEEEecC-------HHHHHHhHHHHhhcccEEeecccCC--CHHHHHHHhCcCcceEeecc
Confidence            34566666544 6554  59997774       2555555666667788888888887  56665 45566678999999


Q ss_pred             cCCCCCCcEE-EEeCCCCCCHHHHHHHHHHHHhCCcEE
Q psy9059         131 FSPVDKMQLL-EIITTEQTSQDTAASAVAVGLKQGKVV  167 (269)
Q Consensus       131 fnP~~~~~lV-Eiv~~~~Ts~e~~~~~~~~~~~lGk~p  167 (269)
                      ..|.....=+ -+..+...+++..+.+.+++..+|+.-
T Consensus       112 n~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~  149 (152)
T d1yqga2         112 NTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV  149 (152)
T ss_dssp             CGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE
T ss_pred             cchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCEE
Confidence            8887765433 466778889999999999999999754

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=89.88  E-value=0.074  Score=40.43  Aligned_cols=96  Identities=3%  Similarity=-0.062  Sum_probs=55.9

Q ss_pred             cCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCCCCcccccccCCCCCCCeEEEeeccCCCC-C
Q psy9059          58 YTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGLAMVFPLQEQIPIQTPHLIIGMHYFSPVD-K  136 (269)
Q Consensus        58 ~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS~l~~p~~~~~~~~~p~R~i~~HffnP~~-~  136 (269)
                      .|.+|+++.+|  +|+=|||.+  .=  .++..+|   ..++.++.+-+++.  |++.++..    +-.+.||.-++. .
T Consensus        47 ~~~~~~~~~~D--iVil~v~d~--~i--~~v~~~l---~~~~~ivi~~s~~~--~~~~l~~~----~~~~~~~~~~~~~~  111 (153)
T d2i76a2          47 ATLEKHPELNG--VVFVIVPDR--YI--KTVANHL---NLGDAVLVHCSGFL--SSEIFKKS----GRASIHPNFSFSSL  111 (153)
T ss_dssp             CSSCCCCC-----CEEECSCTT--TH--HHHHTTT---CCSSCCEEECCSSS--CGGGGCSS----SEEEEEECSCC--C
T ss_pred             cchhhhhccCc--EEEEeccch--hh--hHHHhhh---cccceeeeecccch--hhhhhhhh----ccccceeeeecccc
Confidence            46778887766  999999863  22  3344433   34677777666655  55444322    335667643221 1


Q ss_pred             ------C-cEEEEeCCCCCCHHHHHHHHHHHHhCCcEEEEEe
Q psy9059         137 ------M-QLLEIITTEQTSQDTAASAVAVGLKQGKVVITVK  171 (269)
Q Consensus       137 ------~-~lVEiv~~~~Ts~e~~~~~~~~~~~lGk~pv~vk  171 (269)
                            . .++=.+.   .+++.++.++.+++.+|..++.+.
T Consensus       112 ~~~~~~~~~~~~~~~---gd~~~~~~~~~l~~~lG~~~~~i~  150 (153)
T d2i76a2         112 EKALEMKDQIVFGLE---GDERGLPIVKKIAEEISGKYFVIP  150 (153)
T ss_dssp             TTGGGCGGGCCEEEC---CCTTTHHHHHHHHHHHCSCEEECC
T ss_pred             cchhhhccCcEEEEe---CCHHHHHHHHHHHHHHCCcEEEeC
Confidence                  1 1111222   356788999999999999998873

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.57  E-value=0.59  Score=36.54  Aligned_cols=51  Identities=10%  Similarity=0.033  Sum_probs=41.7

Q ss_pred             CcCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEecCCC
Q psy9059          51 HTGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGSNGL  107 (269)
Q Consensus        51 ~~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaSnTS  107 (269)
                      ..++.+..++.++++++|  +|+.+||-  ...  +++++++.++.+++.++..+..
T Consensus        56 ~~~i~~~~~~~~~~~~ad--~Ii~avps--~~~--~~~~~~l~~~l~~~~ii~~tkg  106 (180)
T d1txga2          56 GVEIFWPEQLEKCLENAE--VVLLGVST--DGV--LPVMSRILPYLKDQYIVLISKG  106 (180)
T ss_dssp             SEEEECGGGHHHHHTTCS--EEEECSCG--GGH--HHHHHHHTTTCCSCEEEECCCS
T ss_pred             cccccccccHHHHHhccc--hhhcccch--hhh--HHHHHhhccccccceecccccC
Confidence            367888999999998877  99999994  455  9999999999988877765443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=83.44  E-value=0.7  Score=35.12  Aligned_cols=47  Identities=6%  Similarity=0.021  Sum_probs=38.6

Q ss_pred             cCeEEecCHHHHhcCCCCceEEeecCCCcCCCchhHHHHHHHhcCCCCcEEec
Q psy9059          52 TGITYLYTYSERLMGSNGLAMVFPLQEQIPIQTPQQMSERIYMYTYSERLMGS  104 (269)
Q Consensus        52 ~~l~~~~~~~~a~~~~~~~~V~E~vpE~l~~K~k~~l~~~l~~~~~~~~iiaS  104 (269)
                      .....+++++|++.++|  +|+.++|..  ..  .+++++|.+++.++++|-.
T Consensus        58 ~~~~~~~~~~e~~~~aD--~iii~v~~~--~~--~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          58 HPDLLTSDIGLAVKDAD--VILIVVPAI--HH--ASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             CCSEEESCHHHHHTTCS--EEEECSCGG--GH--HHHHHHHGGGCCTTCEEEE
T ss_pred             hhhhhhhhhHhHhcCCC--EEEEEEchh--HH--HHHHHHhhhccCCCCEEEE
Confidence            34456788999998877  999999985  35  8999999999998887754