Psyllid ID: psy9061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MPFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHVTSH
Secondary Structure (PSIPRED)
ccccccccccccccEEEEccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEcccccccccEEEEEccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpfwcppgrksgkgyfvyakgskarpvndGALAILKKyslqpqsalkdeDLQLRMVSRFVNEAVLCLEEtilnspaspvydhhldgnlepghsrhvtsh
Flexible Loop (DISEMBL)
mpfwcppgrksgKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNlepghsrhvtsh
Low Complexity Region (SEG)
MPFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHVTSH
Disordered region (IsUnstruct)
************KGYFVYAKGSKARPVNDGALAILKKYSLQP**ALKDEDLQLRMVSRFVNEAVLCLEETILNSP***VY*******************
Disordered Region (DISOPRED)
MPFWCPPGRKSGKGYFVYAKGSK**PVNDGALAILK*************DLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPG********
Disordered Region (DISEMBL)
MPFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPG********
Disordered Region (DISPRO)
*PFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGN************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPFWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHVTSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	99	2.2.26 [Sep-21-2011]
P40939	763	Trifunctional enzyme subu	yes	N/A	0.696	0.090	0.514	1e-14
Q29554	763	Trifunctional enzyme subu	yes	N/A	0.696	0.090	0.528	9e-14
Q8BMS1	763	Trifunctional enzyme subu	yes	N/A	0.696	0.090	0.5	5e-13
Q64428	763	Trifunctional enzyme subu	yes	N/A	0.686	0.089	0.492	4e-12
A7MQP0	729	Fatty acid oxidation comp	yes	N/A	0.696	0.094	0.450	7e-09
Q9KT58	708	Fatty acid oxidation comp	yes	N/A	0.636	0.088	0.447	3e-08
A5F2P2	708	Fatty acid oxidation comp	yes	N/A	0.636	0.088	0.447	3e-08
Q7MIS5	705	Fatty acid oxidation comp	yes	N/A	0.636	0.089	0.470	6e-08
Q87MM3	703	Fatty acid oxidation comp	yes	N/A	0.636	0.089	0.470	7e-08
Q8DB47	705	Fatty acid oxidation comp	yes	N/A	0.636	0.089	0.470	2e-07

>sp|P40939|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
           GRKSGKG+++Y +G K + +N    +IL    L P+S +  DED+Q R+V+RFVNEAV+C
Sbjct: 629 GRKSGKGFYIYQEGVKRKDLNSDMDSILASLKLPPKSEVSSDEDIQFRLVTRFVNEAVMC 688

Query: 67  LEETILNSPA 76
           L+E IL +PA
Sbjct: 689 LQEGILATPA 698

Bifunctional subunit.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 1

>sp|Q29554|ECHA_PIG Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa GN=HADHA PE=1 SV=1

 Score = 75.5 bits (184), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
           GRKSGKG++VY +G K R VN    +IL    +  +  +  DED+Q R+V+RFVNEAVLC
Sbjct: 629 GRKSGKGFYVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLC 688

Query: 67  LEETILNSPA 76
           L+E IL +PA
Sbjct: 689 LQEGILATPA 698

Bifunctional subunit; cannot use crotonyl-CoA or 3-hydroxybutyryl-CoA as substrate.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|Q8BMS1|ECHA_MOUSE Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus GN=Hadha PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
           GRKSGKG+++Y +GSK + +N     IL    L  +  +  DED+Q R+++RFVNEAVLC
Sbjct: 629 GRKSGKGFYIYQEGSKNKSLNSEMDNILANLRLPAKPEVSSDEDVQYRVITRFVNEAVLC 688

Query: 67  LEETILNSPA 76
           L+E IL +PA
Sbjct: 689 LQEGILATPA 698

Bifunctional subunit.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|Q64428|ECHA_RAT Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus norvegicus GN=Hadha PE=1 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
           GRKSGKG+++Y  GSK + +N     IL    L  +  +  DED+Q R+++RFVNEAVLC
Sbjct: 629 GRKSGKGFYIYQSGSKNKNLNSEIDNILVNLRLPAKPEVSSDEDIQYRVITRFVNEAVLC 688

Query: 67  LEETILNSP 75
           L+E IL +P
Sbjct: 689 LQEGILATP 697

Bifunctional subunit.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 1

>sp|A7MQP0|FADB_CROS8 Fatty acid oxidation complex subunit alpha OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=fadB PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 2/71 (2%)

Query: 8   GRKSGKGYFVYAKGSKARP--VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
           G+K+GKG++ Y + SK +P  V D A+  L     QP+ A  DE++  RM+   VNE V 
Sbjct: 582 GQKNGKGFYAYQEDSKGKPRKVPDDAVDSLLAEVSQPKRAFSDEEIVARMMIPMVNEVVR 641

Query: 66  CLEETILNSPA 76
           CLEE I+ SPA
Sbjct: 642 CLEEGIIASPA 652

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Cronobacter sakazakii (strain ATCC BAA-894) (taxid: 290339)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q9KT58|FADJ_VIBCH Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=fadJ PE=3 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG++ Y KGSK + V+     +LK   L P+S L D+++ +R +   +NEAV CL
Sbjct: 580 GRKSGKGFYTY-KGSKKKEVDKSVYKLLK---LTPESKLNDKEIAMRCLLPMLNEAVRCL 635

Query: 68  EETILNS 74
           +E I+ S
Sbjct: 636 DEGIIRS 642

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|A5F2P2|FADJ_VIBC3 Fatty acid oxidation complex subunit alpha OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadJ PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 4/67 (5%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG++ Y KGSK + V+     +LK   L P+S L D+++ +R +   +NEAV CL
Sbjct: 580 GRKSGKGFYTY-KGSKKKEVDKSVYKLLK---LTPESKLNDKEIAMRCLLPMLNEAVRCL 635

Query: 68  EETILNS 74
           +E I+ S
Sbjct: 636 DEGIIRS 642

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q7MIS5|FADJ_VIBVY Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG++ Y KG K + V+     +LK   L P+S L D D+ LR V   +NEAV CL
Sbjct: 577 GRKSGKGFYTY-KGKK-KEVDKSVYKLLK---LTPESKLSDNDIALRCVLPMLNEAVRCL 631

Query: 68  EETILNSP 75
           ++ I+ SP
Sbjct: 632 DDGIIRSP 639

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q87MM3|FADJ_VIBPA Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=fadJ PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG++ Y KG K + V+     +LK   L P+S L D D+ LR V   +NEAV CL
Sbjct: 577 GRKSGKGFYTY-KGKK-KEVDKSIYKLLK---LTPESKLSDNDIALRCVLPMLNEAVRCL 631

Query: 68  EETILNSP 75
           ++ I+ SP
Sbjct: 632 DDGIIRSP 639

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Vibrio parahaemolyticus (taxid: 670)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q8DB47|FADJ_VIBVU Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain CMCP6) GN=fadJ PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 5/68 (7%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG++ Y KG K + V+     +LK   L P+S L D D+ LR V   +NEAV CL
Sbjct: 577 GRKSGKGFYTY-KGKK-KEVDKSVYKLLK---LTPESKLSDNDIALRCVLPMLNEAVRCL 631

Query: 68  EETILNSP 75
           ++ I+ SP
Sbjct: 632 DDGIIRSP 639

Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities.

Vibrio vulnificus (taxid: 672)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
345495602	765	PREDICTED: trifunctional enzyme subunit	0.686	0.088	0.735	2e-20
91083819	761	PREDICTED: similar to hydroxyacyl-coenzy	0.686	0.089	0.691	3e-20
270007934	697	hypothetical protein TcasGA2_TC014680 [T	0.686	0.097	0.691	4e-20
307189793	766	Trifunctional enzyme subunit alpha, mito	0.686	0.088	0.705	1e-19
307196024	740	Trifunctional enzyme subunit alpha, mito	0.686	0.091	0.691	3e-19
332018665	743	Trifunctional enzyme subunit alpha, mito	0.686	0.091	0.647	4e-19
322786657	696	hypothetical protein SINV_01640 [Solenop	0.686	0.097	0.676	6e-19
328717308	760	PREDICTED: trifunctional enzyme subunit	0.686	0.089	0.661	1e-18
312384727	772	hypothetical protein AND_01710 [Anophele	0.686	0.088	0.742	1e-18
332376637	761	unknown [Dendroctonus ponderosae]	0.686	0.089	0.691	2e-18

>gi|345495602|ref|XP_001605350.2| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Nasonia vitripennis]

 Score =  102 bits (255), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/68 (73%), Positives = 54/68 (79%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG FVY  GSK R +N GAL ILKKYSLQP  +  DED QLRMVSRFVNEAVLCL
Sbjct: 631 GRKSGKGIFVYETGSKHRDINPGALDILKKYSLQPLGSTSDEDRQLRMVSRFVNEAVLCL 690

Query: 68  EETILNSP 75
           +E IL +P
Sbjct: 691 QEKILANP 698

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083819|ref|XP_973530.1| PREDICTED: similar to hydroxyacyl-coenzyme A dehydrogenase [Tribolium castaneum]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 57/68 (83%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG +VY KGSK+R VN  AL I+K+YS++P+ A +DED QLRMVSRFVNEA+LCL
Sbjct: 626 GRKSGKGIYVYEKGSKSRSVNHEALDIIKRYSVEPKGAFEDEDKQLRMVSRFVNEAILCL 685

Query: 68  EETILNSP 75
           EE IL +P
Sbjct: 686 EEKILANP 693

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007934|gb|EFA04382.1| hypothetical protein TcasGA2_TC014680 [Tribolium castaneum]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 57/68 (83%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG +VY KGSK+R VN  AL I+K+YS++P+ A +DED QLRMVSRFVNEA+LCL
Sbjct: 562 GRKSGKGIYVYEKGSKSRSVNHEALDIIKRYSVEPKGAFEDEDKQLRMVSRFVNEAILCL 621

Query: 68  EETILNSP 75
           EE IL +P
Sbjct: 622 EEKILANP 629

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189793|gb|EFN74066.1| Trifunctional enzyme subunit alpha, mitochondrial [Camponotus floridanus]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/68 (70%), Positives = 54/68 (79%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG FVY   SK R VN GAL ILKKY+L+P+ +  DED QLRMVSRFVNEAVLCL
Sbjct: 632 GRKSGKGIFVYEADSKNREVNVGALDILKKYTLEPKGSTSDEDRQLRMVSRFVNEAVLCL 691

Query: 68  EETILNSP 75
           +E IL +P
Sbjct: 692 QENILANP 699

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196024|gb|EFN77749.1| Trifunctional enzyme subunit alpha, mitochondrial [Harpegnathos saltator]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 53/68 (77%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG FVY  GSK R VN GA+ I KKY L+P+ +  +ED QLRMVSRFVNEAVLCL
Sbjct: 606 GRKSGKGIFVYETGSKHRNVNIGAMDIFKKYKLEPKGSTSNEDRQLRMVSRFVNEAVLCL 665

Query: 68  EETILNSP 75
           EE IL +P
Sbjct: 666 EENILANP 673

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018665|gb|EGI59237.1| Trifunctional enzyme subunit alpha, mitochondrial [Acromyrmex echinatior]

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 54/68 (79%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG F+Y  GSK R VN GA+ IL+KY L+P+ +  DED Q+R+VSRF+NEAVLCL
Sbjct: 609 GRKSGKGIFIYETGSKNRDVNPGAVDILRKYKLEPKGSTSDEDRQMRLVSRFINEAVLCL 668

Query: 68  EETILNSP 75
           EE IL +P
Sbjct: 669 EENILANP 676

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786657|gb|EFZ13041.1| hypothetical protein SINV_01640 [Solenopsis invicta]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 46/68 (67%), Positives = 53/68 (77%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG FVY   SK R VN GAL I+KKY L+P+ +  DED Q+R+VSRFVNEAVLCL
Sbjct: 562 GRKSGKGIFVYETSSKNRDVNMGALDIMKKYKLEPKGSTSDEDRQMRLVSRFVNEAVLCL 621

Query: 68  EETILNSP 75
           EE IL +P
Sbjct: 622 EENILANP 629

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717308|ref|XP_001949325.2| PREDICTED: trifunctional enzyme subunit alpha, mitochondrial-like [Acyrthosiphon pisum]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 54/68 (79%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKGYFVY  G+K+RP N  A+++L+ + LQP      E+ QLRMVSRFVNEAVLCL
Sbjct: 626 GRKSGKGYFVYKAGTKSRPENTEAISLLENFKLQPIGEQSVENQQLRMVSRFVNEAVLCL 685

Query: 68  EETILNSP 75
           EE+ILNSP
Sbjct: 686 EESILNSP 693

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384727|gb|EFR29384.1| hypothetical protein AND_01710 [Anopheles darlingi]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/70 (74%), Positives = 56/70 (80%), Gaps = 2/70 (2%)

Query: 8   GRKSGKGYFVYAKG-SKARPVNDGALAILK-KYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
           GRKSGKG FVY  G SK R VN GALAILK KY+LQ + A   ED+QLRMVSRFVNEAVL
Sbjct: 635 GRKSGKGVFVYGSGKSKNREVNQGALAILKQKYALQSRGANSVEDMQLRMVSRFVNEAVL 694

Query: 66  CLEETILNSP 75
           CLEE IL+SP
Sbjct: 695 CLEEKILDSP 704

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376637|gb|AEE63458.1| unknown [Dendroctonus ponderosae]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 52/68 (76%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRKSGKG FVY KGSK R VN   + ILKKYSL+P+   +DED  LRM +RFVNEAVLCL
Sbjct: 627 GRKSGKGIFVYEKGSKHREVNLETVNILKKYSLEPRGPFEDEDKTLRMAARFVNEAVLCL 686

Query: 68  EETILNSP 75
           EE IL SP
Sbjct: 687 EEKILASP 694

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	99
ZFIN|ZDB-GENE-041111-204	763	hadhab "hydroxyacyl-Coenzyme A	0.686	0.089	0.608	8.9e-15
FB|FBgn0028479	783	Mtpalpha "Mitochondrial trifun	0.676	0.085	0.647	9.3e-15
WB|WBGene00020347	781	T08B2.7 [Caenorhabditis elegan	0.696	0.088	0.563	1.9e-14
UNIPROTKB|H0YFD6	250	HADHA "Trifunctional enzyme su	0.696	0.276	0.514	2.3e-14
ZFIN|ZDB-GENE-031222-5	761	hadhaa "hydroxyacyl-Coenzyme A	0.686	0.089	0.579	2.8e-13
UNIPROTKB|P40939	763	HADHA "Trifunctional enzyme su	0.696	0.090	0.514	3.6e-13
WB|WBGene00001150	755	ech-1 [Caenorhabditis elegans	0.696	0.091	0.535	4.5e-13
UNIPROTKB|Q29554	763	HADHA "Trifunctional enzyme su	0.696	0.090	0.528	2e-12
UNIPROTKB|F1PIP0	747	HADHA "Uncharacterized protein	0.686	0.091	0.507	3.2e-12
MGI|MGI:2135593	763	Hadha "hydroxyacyl-Coenzyme A	0.676	0.087	0.513	8.9e-12

ZFIN|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 8.9e-15, P = 8.9e-15
 Identities = 42/69 (60%), Positives = 50/69 (72%)

Query:     8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
             GRKSGKG +VY  G K R VN  AL IL+ Y L P +A+  D D+Q R+VSRFVNEAVLC
Sbjct:   629 GRKSGKGCYVYQPGLKRRDVNTEALEILEAYKLTPNAAISSDSDIQYRLVSRFVNEAVLC 688

Query:    67 LEETILNSP 75
             L+E IL +P
Sbjct:   689 LQEGILANP 697

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

FB|FBgn0028479 Mtpalpha "Mitochondrial trifunctional protein alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 9.3e-15, P = 9.3e-15
 Identities = 46/71 (64%), Positives = 53/71 (74%)

Query:     8 GRKSGKGYFVYAKGSK--ARPVNDGALAILK-KYSLQPQSALKDEDLQLRMVSRFVNEAV 64
             GRKSGKG F+Y  G K   RPVN+ AL I+K KY+L  + A   EDL LRMVSRF+NEAV
Sbjct:   641 GRKSGKGIFLY-DGQKRGTRPVNNDALEIVKQKYALVSKGANAPEDLTLRMVSRFINEAV 699

Query:    65 LCLEETILNSP 75
             LCLEE IL+SP
Sbjct:   700 LCLEEKILDSP 710

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISS

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISS

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0042060 "wound healing" evidence=IMP

GO:0042594 "response to starvation" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

WB|WBGene00020347 T08B2.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 196 (74.1 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 40/71 (56%), Positives = 53/71 (74%)

Query:     8 GRKSGKGYFVYAKGSK-ARPVNDGALAILKKYSLQPQSALKD-EDLQLRMVSRFVNEAVL 65
             GRK+GKG FVY  G K ++ VND A  +L+KY L P +++   ED Q+R+VSRFVNEA+L
Sbjct:   646 GRKTGKGIFVYGDGKKGSKKVNDEATKLLQKYKLTPNASVSSPEDRQIRLVSRFVNEALL 705

Query:    66 CLEETILNSPA 76
             CLEE +L SP+
Sbjct:   706 CLEEGVLASPS 716

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|H0YFD6 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query:     8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
             GRKSGKG+++Y +G K + +N    +IL    L P+S +  DED+Q R+V+RFVNEAV+C
Sbjct:   115 GRKSGKGFYIYQEGVKRKDLNSDMDSILASLKLPPKSEVSSDEDIQFRLVTRFVNEAVMC 174

Query:    67 LEETILNSPA 76
             L+E IL +PA
Sbjct:   175 LQEGILATPA 184

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)]

 Score = 185 (70.2 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 40/69 (57%), Positives = 47/69 (68%)

Query:     8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQ-PQSALKDEDLQLRMVSRFVNEAVLC 66
             GRKSGKG +VY   SK + VN  A  ILK + L  P +   DED+Q R+VSRFVNEAVLC
Sbjct:   627 GRKSGKGCYVYGAKSKEKKVNSEAEEILKSFKLTAPPAVSSDEDIQYRLVSRFVNEAVLC 686

Query:    67 LEETILNSP 75
             L+E IL  P
Sbjct:   687 LQEGILADP 695

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IDA

UNIPROTKB|P40939 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 3.6e-13, P = 3.6e-13
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query:     8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
             GRKSGKG+++Y +G K + +N    +IL    L P+S +  DED+Q R+V+RFVNEAV+C
Sbjct:   629 GRKSGKGFYIYQEGVKRKDLNSDMDSILASLKLPPKSEVSSDEDIQFRLVTRFVNEAVMC 688

Query:    67 LEETILNSPA 76
             L+E IL +PA
Sbjct:   689 LQEGILATPA 698

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000062 "fatty-acyl-CoA binding" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;TAS

GO:0003985 "acetyl-CoA C-acetyltransferase activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0006644 "phospholipid metabolic process" evidence=TAS

GO:0035965 "cardiolipin acyl-chain remodeling" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046474 "glycerophospholipid biosynthetic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

WB|WBGene00001150 ech-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 4.5e-13, P = 4.5e-13
 Identities = 38/71 (53%), Positives = 51/71 (71%)

Query:     8 GRKSGKGYFVYAKGSK-ARPVNDGALAILKKYSLQP-QSALKDEDLQLRMVSRFVNEAVL 65
             GRK+ KG FVY  G+K ++ VN  A  + +KY L P +S    ED QLR+VSRFVNEA+L
Sbjct:   620 GRKTSKGIFVYGDGAKGSKKVNQEAAKLFEKYKLTPIKSVSSPEDRQLRLVSRFVNEALL 679

Query:    66 CLEETILNSPA 76
             CLEE +++SP+
Sbjct:   680 CLEEGVISSPS 690

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

UNIPROTKB|Q29554 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 37/70 (52%), Positives = 49/70 (70%)

Query:     8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
             GRKSGKG++VY +G K R VN    +IL    +  +  +  DED+Q R+V+RFVNEAVLC
Sbjct:   629 GRKSGKGFYVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLC 688

Query:    67 LEETILNSPA 76
             L+E IL +PA
Sbjct:   689 LQEGILATPA 698

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PIP0 HADHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 175 (66.7 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query:     8 GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALK-DEDLQLRMVSRFVNEAVLC 66
             GRKSGKG+++Y +G K + VN     IL    + P+  +  DED+Q R+V+RFVNEAVLC
Sbjct:   614 GRKSGKGFYIYQEGVKTKNVNSDMDGILASLKVPPKYGVSSDEDIQYRLVTRFVNEAVLC 673

Query:    67 LEETILNSP 75
             L+E IL +P
Sbjct:   674 LQEGILATP 682

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 8.9e-12, P = 8.9e-12
 Identities = 37/72 (51%), Positives = 53/72 (73%)

Query:     8 GRKSGKGYFVYAKGSKARPVN---DGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
             GRKSGKG+++Y +GSK + +N   D  LA L+    +P+ +  DED+Q R+++RFVNEAV
Sbjct:   629 GRKSGKGFYIYQEGSKNKSLNSEMDNILANLR-LPAKPEVS-SDEDVQYRVITRFVNEAV 686

Query:    65 LCLEETILNSPA 76
             LCL+E IL +PA
Sbjct:   687 LCLQEGILATPA 698

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003857 "3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO

GO:0003988 "acetyl-CoA C-acyltransferase activity" evidence=ISO

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISO;IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016507 "mitochondrial fatty acid beta-oxidation multienzyme complex" evidence=ISO

GO:0016508 "long-chain-enoyl-CoA hydratase activity" evidence=ISO

GO:0016509 "long-chain-3-hydroxyacyl-CoA dehydrogenase activity" evidence=ISO;IDA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0032868 "response to insulin stimulus" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40939	ECHA_HUMAN	1, ., 1, ., 1, ., 2, 1, 1	0.5142	0.6969	0.0904	yes	N/A
Q29554	ECHA_PIG	1, ., 1, ., 1, ., 2, 1, 1	0.5285	0.6969	0.0904	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	99
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-25
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	1e-11
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	3e-11
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	1e-10
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	1e-10

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 98.0 bits (244), Expect = 2e-25
 Identities = 41/71 (57%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 8   GRKSGKGYFVYAKGSKA-RPVNDGALAILKKYSLQPQSAL-KDEDLQLRMVSRFVNEAVL 65
           GRKSGKG F+Y +G K  + VN  A  IL +Y L P++ +   ED+Q+R+VSRFVNEAVL
Sbjct: 603 GRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVL 662

Query: 66  CLEETILNSPA 76
           CLEE IL SP+
Sbjct: 663 CLEEGILASPS 673

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 8   GRKSGKGYFVYAKGSKARP--VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
           G+K+GKG++ Y +  K +P    D A+  L    +QP+    DE++  RM+   +NE V 
Sbjct: 582 GQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQPKREFSDEEIIARMMIPMINEVVR 641

Query: 66  CLEETILNSPA 76
           CLEE I+ SPA
Sbjct: 642 CLEEGIVASPA 652

Length = 715

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 57.9 bits (140), Expect = 3e-11
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 8   GRKSGKGYFVYAKGSKARP---VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
           G+K+GKG++ Y    K +P   V+   L +LK      Q    DE++  RM+   +NE V
Sbjct: 582 GQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVV-YEQRDFDDEEIIARMMIPMINETV 640

Query: 65  LCLEETILNSPA 76
            CLEE I+ + A
Sbjct: 641 RCLEEGIVATAA 652

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)

Query: 8   GRKSGKGYFVYAK--GSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVL 65
           GRK+G+G+++Y +      + V++    +L    + PQS L   ++  R V   +NEAV 
Sbjct: 576 GRKNGRGFYLYGQKGKKSKKQVDESVYPLLG---ITPQSRLSANEIAERCVMLMLNEAVR 632

Query: 66  CLEETILNSP 75
           CL+E I+ S 
Sbjct: 633 CLDEGIIRSA 642

Length = 708

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCL 67
           GRK+GKG+++Y   +K + V++   ++     ++P    +   +  R V   +NEAV CL
Sbjct: 571 GRKNGKGFYLYGAATKKKAVDE---SVYGLLGIKPGVDKEASAVAERCVMLMLNEAVRCL 627

Query: 68  EETILNSP 75
           +E ++ SP
Sbjct: 628 DEGVIRSP 635

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	99
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.9
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.88
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.87
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.87
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.85
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.85
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.84
KOG1683|consensus	380		99.78
PF00725	97	3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal	99.51
KOG2304|consensus	298		99.38
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.34
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.28
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.26
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.23
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.22
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.18
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.13
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.13
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.08
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.85
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.84
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.83
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.81
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.77
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.73
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.62
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.5
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.49
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.31
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.01
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.8
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.33
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.74
KOG2305|consensus	313		96.62
KOG1683|consensus	380		94.75

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.90  E-value=9.2e-24  Score=175.31  Aligned_cols=93  Identities=48%  Similarity=0.716  Sum_probs=79.5

Q ss_pred             CCCCccccCceeEeccCCCC-CCCCCHHHHHHHHhhccCCcc-ccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHH
Q psy9061           4 WCPPGRKSGKGYFVYAKGSK-ARPVNDGALAILKKYSLQPQS-ALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYD   81 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~   81 (99)
                      +|++|+|||+|||+|+++++ ++.+++++..++......+.. ..+.++|+|||+++|+|||++||+|||+.+|+|||.+
T Consensus       599 ~G~~G~k~G~GfY~y~~~~~~~~~~~~~v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a  678 (737)
T TIGR02441       599 AGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIG  678 (737)
T ss_pred             CCCCcccCCCeeEEcCCCCCCcCCCCHHHHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHH
Confidence            69999999999999987653 567999998888654323321 3578999999999999999999999998899999999


Q ss_pred             HHhhcCCCC---cccccc
Q psy9061          82 HHLDGNLEP---GHSRHV   96 (99)
Q Consensus        82 ~~~g~G~p~---gp~~~~   96 (99)
                      |++|+|||+   |||+..
T Consensus       679 ~~~G~GfP~~~gGP~~~a  696 (737)
T TIGR02441       679 AVFGLGFPPFLGGPFRFV  696 (737)
T ss_pred             HHhCCCCCCccCCHHHHH
Confidence            999999997   999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.88  E-value=6.2e-23  Score=169.86  Aligned_cols=92  Identities=29%  Similarity=0.474  Sum_probs=77.9

Q ss_pred             CCCCccccCceeEeccCC---CCCCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHH
Q psy9061           4 WCPPGRKSGKGYFVYAKG---SKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVY   80 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~   80 (99)
                      +|++|+|||+|||+|+++   +.++..|+++..++...+.. ...++.++|+|||+.+|+|||++||+|||+.+++|||.
T Consensus       578 ~G~lG~K~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~  656 (714)
T TIGR02437       578 AKRLGQKNGKGFYAYEADKKGKPKKLVDSSVLELLKPVVYE-QRDFDDEEIIARMMIPMINETVRCLEEGIVATAAEADM  656 (714)
T ss_pred             CCCCcccCCCEEEecccCcCccccCCCCHHHHHHHHHhhcc-cCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHH
Confidence            699999999999999643   12356899998887654322 23578899999999999999999999998889999999


Q ss_pred             HHHhhcCCCC---cccccc
Q psy9061          81 DHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        81 ~~~~g~G~p~---gp~~~~   96 (99)
                      ++++|+|||+   |||+..
T Consensus       657 ~~~~G~Gfp~~~gGP~~~~  675 (714)
T TIGR02437       657 GLVYGLGFPPFRGGAFRYL  675 (714)
T ss_pred             HHHhCCCCCCccCCHHHHH
Confidence            9999999998   999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.87  E-value=3.8e-22  Score=164.79  Aligned_cols=90  Identities=28%  Similarity=0.478  Sum_probs=78.0

Q ss_pred             CCCCccccCceeEeccCCCCCCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q psy9061           4 WCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHH   83 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~   83 (99)
                      +|++|+|||+|||+|+.+++++..|+.+..++..   .+....+.++|+|||+.+++|||++|++|||+.+|+|||.+++
T Consensus       567 ~G~lG~ksg~GfY~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~  643 (699)
T TIGR02440       567 DDRKGRKNGKGFYLYGAATKKKAVDESVYGLLGI---KPGVDKEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAI  643 (699)
T ss_pred             CCCCcccCCcEEEeCCCCCCcCCCCHHHHHHhCc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHH
Confidence            6999999999999998655556789998887632   2233578999999999999999999999999779999999999


Q ss_pred             hhcCCCC---cccccc
Q psy9061          84 LDGNLEP---GHSRHV   96 (99)
Q Consensus        84 ~g~G~p~---gp~~~~   96 (99)
                      +|+|||+   |||+..
T Consensus       644 ~g~G~p~~~~Gpf~~~  659 (699)
T TIGR02440       644 FGIGFPPFLGGPFRYI  659 (699)
T ss_pred             hcCCCCCCcCCHHHHH
Confidence            9999997   999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.87  E-value=4.6e-22  Score=164.47  Aligned_cols=90  Identities=30%  Similarity=0.496  Sum_probs=77.0

Q ss_pred             CCCCccccCceeEeccCCCC--CCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHH
Q psy9061           4 WCPPGRKSGKGYFVYAKGSK--ARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYD   81 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~   81 (99)
                      .|++|+|||+|||+|+++++  ++..++++..++..   .+...++.++|+|||+.+|+|||++|++|||+.+++|||.+
T Consensus       572 ~g~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~  648 (708)
T PRK11154        572 DDRKGRKNGRGFYLYGQKGKKSKKQVDESVYPLLGI---TPQSRLSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIG  648 (708)
T ss_pred             CCCCcccCCceEEECCCCcccccccCCHHHHHHhcc---CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHH
Confidence            69999999999999985433  35688888777642   23345899999999999999999999999997799999999


Q ss_pred             HHhhcCCCC---cccccc
Q psy9061          82 HHLDGNLEP---GHSRHV   96 (99)
Q Consensus        82 ~~~g~G~p~---gp~~~~   96 (99)
                      |++|+|||+   |||+..
T Consensus       649 ~~~G~G~p~~~gGp~~~~  666 (708)
T PRK11154        649 AVFGIGFPPFLGGPFRYM  666 (708)
T ss_pred             HHhcCCCCCccCCHHHHH
Confidence            999999998   999864

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.85  E-value=1.1e-21  Score=157.24  Aligned_cols=47  Identities=23%  Similarity=0.114  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      .+|+|||+.+++|||+++++|||+ +++|||.+|++|+|||+|||...
T Consensus       415 Gfi~nRil~~~~nEA~~ll~eGva-s~~dID~a~~~g~G~P~GP~~~~  461 (503)
T TIGR02279       415 GLLILRTVAMLANEAADAVLQGVA-SAQDIDTAMRLGVNYPYGPLAWA  461 (503)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCcCHHHHH
Confidence            799999999999999999999999 99999999999999999999753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.85  E-value=2.1e-21  Score=160.78  Aligned_cols=92  Identities=29%  Similarity=0.464  Sum_probs=76.9

Q ss_pred             CCCCccccCceeEeccCCC--C-CCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHH
Q psy9061           4 WCPPGRKSGKGYFVYAKGS--K-ARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVY   80 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~   80 (99)
                      +|++|+|||+|||+|+++.  + ++..|+.+.+++...+.. ...+++++|+|||+.+++|||++|++|||+.+|+|||.
T Consensus       578 ~G~~G~k~g~GfY~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~  656 (715)
T PRK11730        578 AKRFGQKNGKGFYRYEEDKKGKPKKEVDPAVYELLAPVVQP-KREFSDEEIIARMMIPMINEVVRCLEEGIVASPAEADM  656 (715)
T ss_pred             CCCCccccCCEeEecccCCCcccccCCCHHHHHHHHHhccc-cCCCCHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence            6999999999999997432  1 345788888887654322 23478899999999999999999999998669999999


Q ss_pred             HHHhhcCCCC---cccccc
Q psy9061          81 DHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        81 ~~~~g~G~p~---gp~~~~   96 (99)
                      ++++|+|||+   |||+..
T Consensus       657 a~~~g~G~p~~~gGPf~~~  675 (715)
T PRK11730        657 ALVYGLGFPPFRGGAFRYL  675 (715)
T ss_pred             HHHhCCCCCCCcCCHHHHH
Confidence            9999999997   999864

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.84  E-value=1.8e-21  Score=156.13  Aligned_cols=49  Identities=27%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      +..+|+||++.+++|||++|++|||+ |++|||.+|++|+|||+|||+..
T Consensus       414 ~~Gfi~nRll~~~~nEa~~ll~eGva-s~~dID~a~~~g~G~p~GP~~~~  462 (507)
T PRK08268        414 SPGFVAQRTVAMIVNEAADIAQQGIA-SPADIDLAMRLGLNYPLGPLAWG  462 (507)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCcCHHHHH
Confidence            56789999999999999999999998 99999999999999999999754

>KOG1683|consensus

Probab=99.78  E-value=9.4e-20  Score=141.10  Aligned_cols=94  Identities=34%  Similarity=0.491  Sum_probs=78.0

Q ss_pred             CCCCccccCceeEeccCCCCCCCCCHHHHHHHHhhccCCc-cccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHH
Q psy9061           4 WCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQPQ-SALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDH   82 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~   82 (99)
                      .|+.|+|||+|||.|+++.++..-.+++.+.+++....+. +..+++++++|+++++||||++|++||++.+++++|++.
T Consensus       248 ~~~~g~kT~kg~y~y~~~l~k~~~~~~~~~~~r~l~~~~~~r~~~~ed~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~  327 (380)
T KOG1683|consen  248 KGRAGIKTGKGIYPYARGLTKKMKRDEMEALLRRLSLTPNPRVADDEDFVEFLLSPFVNEALRCLLEGLKASPSDGDIAS  327 (380)
T ss_pred             HHhhhhhccCcccccccccccCCChhhHHHHHHHhccCCCcccCCHHHHHHHHhhHHHHHHHHHHHHHHhcCccccceee
Confidence            4789999999999999864332222677777766552222 457999999999999999999999999999999999999


Q ss_pred             HhhcCCCC---ccccccc
Q psy9061          83 HLDGNLEP---GHSRHVT   97 (99)
Q Consensus        83 ~~g~G~p~---gp~~~~~   97 (99)
                      ++|+|||+   ||+|-|.
T Consensus       328 v~G~gfp~~~GGp~~~~d  345 (380)
T KOG1683|consen  328 VFGLGFPPFRGGPMRFVD  345 (380)
T ss_pred             eeccCCCCcCCCceeeee
Confidence            99999997   9999764

>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.51  E-value=8.2e-15  Score=93.67  Aligned_cols=46  Identities=20%  Similarity=0.161  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          50 DLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        50 ~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      +|+||++.+++|||+++++||++ ||+|||.+++.++|||+|||+..
T Consensus         2 Fi~nRl~~~~~~ea~~l~~egva-s~~~ID~~~~~~~G~p~Gpf~l~   47 (97)
T PF00725_consen    2 FIVNRLLAALLNEAARLVEEGVA-SPEDIDRAMRYGLGFPMGPFELA   47 (97)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHTHSSTHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCCCCccchHH
Confidence            57999999999999999999999 89999999999999999999864

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....

>KOG2304|consensus

Probab=99.38  E-value=2.8e-13  Score=100.72  Aligned_cols=50  Identities=14%  Similarity=0.007  Sum_probs=46.7

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        46 ~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      -+..+|+||||.++++||+++++.|.+ |-+|||.+|++|.|||||||+..
T Consensus       197 DtpGFIVNRlLiPyl~ea~r~yerGdA-skeDIDtaMklGagyPMGPfEL~  246 (298)
T KOG2304|consen  197 DTPGFIVNRLLIPYLMEAIRMYERGDA-SKEDIDTAMKLGAGYPMGPFELA  246 (298)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHHhcCC-cHhhHHHHHhccCCCCCChHHHH
Confidence            356799999999999999999999999 89999999999999999999863

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.34  E-value=8e-13  Score=98.31  Aligned_cols=50  Identities=18%  Similarity=0.119  Sum_probs=46.6

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        46 ~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      -...+|.||++.+++|||++|+++||+ +|+|||.++++|+|||+|||+..
T Consensus       183 d~~g~i~~Ri~~~~~~ea~~~~~~gv~-~~~diD~~~~~g~g~p~Gp~~~~  232 (282)
T PRK05808        183 NAPGFVVNRILIPMINEAIFVLAEGVA-TAEDIDEGMKLGCNHPIGPLALA  232 (282)
T ss_pred             CccChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence            356799999999999999999999998 89999999999999999999864

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.28  E-value=3.7e-12  Score=95.10  Aligned_cols=48  Identities=19%  Similarity=0.063  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ..+|+|||+.+++|||++|+++||+ +++|||.++++|+|||+|||+..
T Consensus       184 ~Gf~~nRl~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~p~Gp~~~~  231 (288)
T PRK09260        184 PGFVTSRISALVGNEAFYMLQEGVA-TAEDIDKAIRLGLNFPMGPLELG  231 (288)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence            5789999999999999999999998 99999999999999999999764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.26  E-value=4.4e-12  Score=95.36  Aligned_cols=48  Identities=10%  Similarity=-0.007  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ..+|.|||+.+++|||++|++||++ |++|||.++++|+|||+|||+..
T Consensus       189 pGfi~nRi~~~~~~Ea~~ll~eGv~-~~~dID~~~~~g~G~p~Gpf~~~  236 (286)
T PRK07819        189 SGFVVNALLVPYLLSAIRMVESGFA-TAEDIDKAMVLGCAHPMGPLRLS  236 (286)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence            5689999999999999999999997 89999999999999999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.23  E-value=8.5e-12  Score=93.20  Aligned_cols=49  Identities=8%  Similarity=0.066  Sum_probs=46.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|+||++.+++|||++++++|++ ||+|||.+++.++|||+|||+..
T Consensus       187 ~pgfi~nRi~~~~~~ea~~l~~~g~a-~~~~iD~a~~~~~g~~~Gp~~~~  235 (287)
T PRK08293        187 QPGYILNSLLVPFLSAALALWAKGVA-DPETIDKTWMIATGAPMGPFGIL  235 (287)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCcCHHHHH
Confidence            45799999999999999999999999 99999999999999999999864

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.22  E-value=6.1e-12  Score=96.21  Aligned_cols=49  Identities=20%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|+||++.+++|||++++++|++ +|++||.+|..++|||||||+..
T Consensus       184 ~pGFi~NRil~~~~~eA~~l~~eGva-~~e~ID~~~~~~~G~pmGpf~l~  232 (307)
T COG1250         184 VPGFIVNRLLAALLNEAIRLLEEGVA-TPEEIDAAMRQGLGLPMGPFELA  232 (307)
T ss_pred             CCceehHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCccHHHHH
Confidence            46799999999999999999999999 99999999999999999999864

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.18  E-value=1.9e-11  Score=91.48  Aligned_cols=49  Identities=18%  Similarity=0.086  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|.||++.+++|||++|+++|++ +++|||.++++|+|||+|||+..
T Consensus       185 ~~g~i~nri~~~~~~ea~~~~~~gv~-~~~~iD~~~~~g~g~~~Gp~~~~  233 (295)
T PLN02545        185 YPGFIVNRILMPMINEAFYALYTGVA-SKEDIDTGMKLGTNHPMGPLHLA  233 (295)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCCCHHHHH
Confidence            35789999999999999999999998 89999999999999999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.13  E-value=3.2e-11  Score=90.19  Aligned_cols=49  Identities=14%  Similarity=0.026  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...++.||++.+++|||+++++||++ |++|||.++..++|||+|||+..
T Consensus       187 ~pgfv~nRl~~~~~~ea~~~~~~g~a-~~~~iD~~~~~~~g~~~Gp~~~~  235 (291)
T PRK06035        187 VPGFFTTRFIEGWLLEAIRSFEIGIA-TIKDIDEMCKLAFGFPMGPFELM  235 (291)
T ss_pred             CCCeeHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhcCCCccCHHHHH
Confidence            35689999999999999999999999 99999999999999999999864

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.13  E-value=4.4e-11  Score=89.36  Aligned_cols=48  Identities=21%  Similarity=0.123  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ..+|.||++.+++|||++++++|++ +++|||.++.+|+|||+|||+..
T Consensus       186 pg~i~nRl~~~~~~ea~~~~~~g~~-~~~~iD~~~~~g~g~~~GP~~~~  233 (292)
T PRK07530        186 PAFIVNRILLPMINEAIYTLYEGVG-SVEAIDTAMKLGANHPMGPLELA  233 (292)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence            3689999999999999999999998 99999999999999999999864

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.08  E-value=1e-10  Score=89.85  Aligned_cols=49  Identities=10%  Similarity=0.049  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~   96 (99)
                      ...+|.|||+.+++|||++++++|++ |++|||.+|.+|+|+|   +|||++.
T Consensus       186 ~pGFi~NRl~~a~~~EA~~lv~eGva-s~edID~a~~~g~g~r~~~~Gpf~~~  237 (321)
T PRK07066        186 VPGFIADRLLEALWREALHLVNEGVA-TTGEIDDAIRFGAGIRWSFMGTFLTY  237 (321)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHh
Confidence            46799999999999999999999999 9999999999999998   9999864

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.85  E-value=2.1e-09  Score=89.63  Aligned_cols=48  Identities=6%  Similarity=-0.166  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|+|||+.+++|||++++++| + +++|||.++..++|||+|||+..
T Consensus       494 ~pGfv~nRi~~~~~~ea~~lv~~G-a-~~e~ID~a~~~~~G~~~GP~~~~  541 (715)
T PRK11730        494 CPGFFVNRVLFPYFAGFSQLLRDG-A-DFRQIDKVMEKQFGWPMGPAYLL  541 (715)
T ss_pred             cCchhHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHHhhCCCccCHHHHH
Confidence            467999999999999999999999 7 89999999999999999999864

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.84  E-value=2.3e-09  Score=89.51  Aligned_cols=48  Identities=6%  Similarity=-0.163  Sum_probs=44.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|.|||+.++++||++++++| + +|++||.++..++|||+|||++.
T Consensus       494 ~pGfi~NRl~~~~~~ea~~l~~eG-~-~~~~ID~a~~~~~G~p~GPf~l~  541 (714)
T TIGR02437       494 CPGFFVNRVLFPYFGGFSKLLRDG-A-DFVRIDKVMEKQFGWPMGPAYLL  541 (714)
T ss_pred             cccchHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHHhcCCCccCHHHHH
Confidence            467999999999999999999999 6 89999999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.83  E-value=3e-09  Score=88.58  Aligned_cols=47  Identities=15%  Similarity=-0.012  Sum_probs=43.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|+|||+.+++|||++++++|+  +++|||.+++ ++|||+|||+..
T Consensus       491 ~pGfi~nRl~~~~~~EA~~lv~eGv--~~~dID~a~~-~~G~p~GPf~~~  537 (708)
T PRK11154        491 GAGFYVNRILAPYINEAARLLLEGE--PIEHIDAALV-KFGFPVGPITLL  537 (708)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH-HcCCCCCHHHHH
Confidence            3468999999999999999999996  6999999998 899999999864

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.81  E-value=3.5e-09  Score=88.14  Aligned_cols=47  Identities=17%  Similarity=0.013  Sum_probs=43.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|+|||+.+++|||++++++| + +++|||.++. ++|||+|||+..
T Consensus       486 ~pGfi~nRl~~~~~~Ea~~l~~~G-~-~~~dID~a~~-~~G~p~GPf~l~  532 (699)
T TIGR02440       486 KAGFYVNRILAPYMNEAARLLLEG-E-PVEHIDKALV-KFGFPVGPITLL  532 (699)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHHH-HcCCCcCHHHHH
Confidence            357999999999999999999999 4 8999999997 999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.77  E-value=6.4e-09  Score=83.90  Aligned_cols=48  Identities=19%  Similarity=0.133  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ..+|.||++.++++||+.++++|++ ++++||.++..++|||||||++.
T Consensus       187 pGfi~Nrl~~~~~~EA~~l~e~g~a-~~~~ID~al~~~~G~~mGPf~l~  234 (503)
T TIGR02279       187 PGFIVNRVARPYYAEALRALEEQVA-APAVLDAALRDGAGFPMGPFELT  234 (503)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCcCHHHHH
Confidence            4579999999999999999999999 99999999999999999999863

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.73  E-value=8.3e-09  Score=86.47  Aligned_cols=47  Identities=13%  Similarity=0.069  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|+||++.+++|||+++++||+  +++|||.++ .++|||+|||+..
T Consensus       516 ~pGFi~NRi~~~~~~ea~~lv~eGv--~~~~ID~a~-~~~G~p~GP~~l~  562 (737)
T TIGR02441       516 GPGFYTTRCLGPMLAEVIRLLQEGV--DPKKLDKLT-TKFGFPVGAATLA  562 (737)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHcCC--CHHHHHHHH-HHcCCCCCHHHHH
Confidence            4578999999999999999999996  899999997 5999999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.62  E-value=3.6e-08  Score=79.56  Aligned_cols=47  Identities=19%  Similarity=0.113  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRH   95 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~   95 (99)
                      ..+|.||++.++++||+.++++|++ ++++||.++..++|||||||+.
T Consensus       189 pGfi~Nrll~~~~~Ea~~l~~~g~~-~~~~iD~al~~~~G~~mGPf~l  235 (507)
T PRK08268        189 PGFIVNRAARPYYTEALRVLEEGVA-DPATIDAILREAAGFRMGPFEL  235 (507)
T ss_pred             CChHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCcCHHHH
Confidence            4689999999999999999999999 9999999999999999999984

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.50  E-value=1.2e-07  Score=71.14  Aligned_cols=48  Identities=15%  Similarity=0.062  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV   96 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~   96 (99)
                      ..++.||++.++++||..++++|++ ++++||.++..++|||   +|||+..
T Consensus       183 ~G~i~nr~~~~~~~Ea~~l~~~g~~-~~~~id~~~~~~~g~~~~~~Gp~~~~  233 (311)
T PRK06130        183 PGFIANRIQHALAREAISLLEKGVA-SAEDIDEVVKWSLGIRLALTGPLEQR  233 (311)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhcCCCCccCCCHHHHh
Confidence            3569999999999999999999999 9999999999999999   6999864

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.49  E-value=9.9e-08  Score=72.88  Aligned_cols=47  Identities=19%  Similarity=0.084  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061          49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV   96 (99)
Q Consensus        49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~   96 (99)
                      .+|+||++.++++||+.|+++|++ ++++||.++..++|||   +|||+..
T Consensus       183 Gfi~nri~~~~l~EAl~l~e~g~~-~~e~iD~a~~~g~G~~~~~~Gpf~~~  232 (314)
T PRK08269        183 GYIVPRIQALAMNEAARMVEEGVA-SAEDIDKAIRTGFGLRFAVLGLLEFI  232 (314)
T ss_pred             CcchHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCccCcCHHHHH
Confidence            579999999999999999999998 9999999999999999   5999754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.31  E-value=7.9e-07  Score=67.14  Aligned_cols=47  Identities=15%  Similarity=-0.001  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Cccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRH   95 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~   95 (99)
                      ..+|.||++.++++||+.++++|++ |+++||.++..|+|++   +|||..
T Consensus       186 ~G~i~nrl~~a~~~EA~~l~~~g~~-~~~~id~~~~~~~g~~~~~~gp~~~  235 (308)
T PRK06129        186 DGFVLNRLQGALLREAFRLVADGVA-SVDDIDAVIRDGLGLRWSFMGPFET  235 (308)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhccCCCccCcCHHHH
Confidence            4579999999999999999999999 9999999999999998   899865

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.01  E-value=5.6e-06  Score=66.56  Aligned_cols=50  Identities=14%  Similarity=0.011  Sum_probs=45.2

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061          46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV   96 (99)
Q Consensus        46 ~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~   96 (99)
                      ....++.||++.++++||+.++++|++ |+++||.++..|+|++   +|||++.
T Consensus       182 ~~~gfi~nrl~~a~~~EA~~L~~~g~~-s~~~id~~~~~g~g~~~~~~Gpf~~~  234 (495)
T PRK07531        182 EIDAFVGDRLLEALWREALWLVKDGIA-TTEEIDDVIRYSFGLRWAQMGLFETY  234 (495)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHhhccCCCccccchHHHH
Confidence            456789999999999999999999999 9999999999988875   8999764

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.80  E-value=7.4e-06  Score=62.93  Aligned_cols=17  Identities=47%  Similarity=0.739  Sum_probs=15.8

Q ss_pred             CCCCccccCceeEeccC
Q psy9061           4 WCPPGRKSGKGYFVYAK   20 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~   20 (99)
                      +|++|+|||+|||+|++
T Consensus       269 ~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         269 AGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             cccccccCCCcceeccc
Confidence            69999999999999974

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.33  E-value=9.8e-05  Score=56.46  Aligned_cols=18  Identities=28%  Similarity=0.483  Sum_probs=15.9

Q ss_pred             CCCCCccccCceeEeccC
Q psy9061           3 FWCPPGRKSGKGYFVYAK   20 (99)
Q Consensus         3 ~~grlGrKtG~GfY~Y~~   20 (99)
                      -+|++|+|||+|||+|++
T Consensus       267 ~~g~~G~ksG~GfY~y~~  284 (314)
T PRK08269        267 EEGRDGLRTGAGFYDYAG  284 (314)
T ss_pred             HCCCCcccCCCcceeCCC
Confidence            369999999999999964

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.74  E-value=0.00059  Score=51.23  Aligned_cols=19  Identities=26%  Similarity=0.476  Sum_probs=16.5

Q ss_pred             CCCCCccccCceeEeccCC
Q psy9061           3 FWCPPGRKSGKGYFVYAKG   21 (99)
Q Consensus         3 ~~grlGrKtG~GfY~Y~~g   21 (99)
                      -.|++|+|+|+|||+|+++
T Consensus       267 ~~g~~G~~~g~gfy~y~~~  285 (311)
T PRK06130        267 EAGELGAKSGQGFYAWPPE  285 (311)
T ss_pred             HcCCccccCCCcCccCCCC
Confidence            3689999999999999754

>KOG2305|consensus

Probab=96.62  E-value=0.0013  Score=49.71  Aligned_cols=47  Identities=13%  Similarity=-0.084  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061          49 EDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV   96 (99)
Q Consensus        49 ~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~   96 (99)
                      .+.+||+.++++||..+++..|+. +..|+|..|-.|+|.+   -||++++
T Consensus       189 Gf~lnriq~Ailne~wrLvasGil-~v~dvD~VmS~GLG~RYAflG~lET~  238 (313)
T KOG2305|consen  189 GFALNRIQYAILNETWRLVASGIL-NVNDVDAVMSAGLGPRYAFLGPLETA  238 (313)
T ss_pred             cceeccccHHHHHHHHHHHHccCc-chhhHHHHHhcCCCcchhcccchhhh
Confidence            468899999999999999999999 7999999999999975   4888765

>KOG1683|consensus

Probab=94.75  E-value=0.0084  Score=47.38  Aligned_cols=48  Identities=10%  Similarity=-0.182  Sum_probs=41.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      .-++.++|++.++.+++.+++.|=++ +|..+|. ++--+|||+||++..
T Consensus       171 c~gf~v~r~l~~y~~~~~~~l~e~g~-~p~~iD~-~~t~fGf~~g~~~L~  218 (380)
T KOG1683|consen  171 CCGFRVNRLLPPYTIGLNELLLEIGA-DPWLIDS-LITKFGFRVGERALA  218 (380)
T ss_pred             CCceEEEecccHHHHHHHHHHHHcCC-CHHHHHH-HHHhcCccccHHHHh
Confidence            34678999999999999999999335 7999999 778899999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	99
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		6e-04

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 8   GRKSGKGYFVY---AKGSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
           G+K+GKG++ Y    KG + + V+   L +LK    + Q  + DED+   M+     E V
Sbjct: 582 GQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVYE-QRDVTDEDIINWMMIPLCLETV 640
Query: 65  LCLEETILNSPA 76
            CLE+ I+ + A
Sbjct: 641 RCLEDGIVETAA 652

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	99
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	1e-18
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	5e-18
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	9e-18
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	4e-17
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	8e-16

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 8   GRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNEAV 64
           GRK+ KG++ Y   ++ +  +     I+++ S         + D+D+   M+   VNE  
Sbjct: 312 GRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQIINDQDVINFMLYPTVNEGY 371

Query: 65  LCLEETILNSPA 76
            C+EE ++++ +
Sbjct: 372 RCIEEGVISNES 383

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 76.5 bits (189), Expect = 5e-18
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 7   PGRKSGKGYFVY-AKGSKARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNE 62
            G+K+GKG++ Y     +    +      L +Y       Q  +  E++  R +   +NE
Sbjct: 590 FGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINE 649

Query: 63  AVLCLEETILNSPA 76
           A   LEE +   P 
Sbjct: 650 AFRILEEGMAARPE 663

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463

 Score = 75.4 bits (186), Expect = 9e-18
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 8   GRKSGKGYFVY-AKGSKARPVNDGALAILKKYSLQ---PQSALKDEDLQLRMVSRFVNEA 63
           G+K+GKG++ Y     +    +      L +Y       Q  +  E++  R +   +NEA
Sbjct: 312 GQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEA 371

Query: 64  VLCLEETILNSPA 76
              LEE +   P 
Sbjct: 372 FRILEEGMAARPE 384

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 73.4 bits (181), Expect = 4e-17
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 8   GRKSGKGYFVYAKGSKARP---VNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAV 64
           G+K+GKG++ Y    K +    V+   L +LK      Q  + DED+   M+     E V
Sbjct: 582 GQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-EQRDVTDEDIINWMMIPLCLETV 640

Query: 65  LCLEETILNSPA 76
            CLE+ I+ + A
Sbjct: 641 RCLEDGIVETAA 652

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 70.0 bits (172), Expect = 8e-16
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 7   PGRKSGKGYFVYAKGSKARPVNDGALAILKKYSLQ-------PQSALKDEDLQLRMVSRF 59
            G  + KG+++Y    KA+P +      ++K             + L ++D+        
Sbjct: 577 AGEATRKGFYLYDDKRKAKP-DPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPV 635

Query: 60  VNEAVLCLEETILNSPA 76
           VNEA     E I    A
Sbjct: 636 VNEACRVFAEGIAVKAA 652

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	99
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.92
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.9
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.88
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.87
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.86
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.83
3ctv_A	110	HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura	99.61
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.05
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.9
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.85
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.77
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.68
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.58
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.47
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.44
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.4
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.36
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.27
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.5

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.92  E-value=2.4e-25  Score=175.79  Aligned_cols=93  Identities=22%  Similarity=0.275  Sum_probs=80.1

Q ss_pred             CCCCccccCceeEeccCCCCCCCCCHHHHHHHHhhcc---CCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHH
Q psy9061           4 WCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSL---QPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVY   80 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~   80 (99)
                      +|++|||||+|||+|+++++++.+|+++..++...+.   .....+++++|++||+++|+|||++||+|||+.+++|||+
T Consensus       308 ~G~lG~KtG~GFY~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~  387 (460)
T 3k6j_A          308 LKRYGRKTNKGFYKYDDKTQRKENDTEMEQIIRRVSQNAKSNIQIINDQDVINFMLYPTVNEGYRCIEEGVISNESLIDI  387 (460)
T ss_dssp             TTCCBGGGTBSSSEECTTTCCEECCHHHHHHHHHC---CCCSSCCCSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             CCCCeeecCCEEEECCCCCCCCCCCHHHHHHHHHHHHhcCCCcccCChHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhH
Confidence            6999999999999998765556789999998865431   1123578999999999999999999999999999999999


Q ss_pred             HHHhhcCCCC---cccccc
Q psy9061          81 DHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        81 ~~~~g~G~p~---gp~~~~   96 (99)
                      +|++|+|||+   |||+..
T Consensus       388 ~~~~G~GfP~~~GGp~~~~  406 (460)
T 3k6j_A          388 MFILGFGWPIHSGGPMRFG  406 (460)
T ss_dssp             HHHHTCCCSEETTEECBCS
T ss_pred             HHHhcCCCCccccCHHHHH
Confidence            9999999999   999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.90  E-value=5e-24  Score=175.80  Aligned_cols=93  Identities=22%  Similarity=0.217  Sum_probs=80.0

Q ss_pred             CCCCccccCceeEeccCCC-CCCCCCHHHHHHHHhhc---cCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHH
Q psy9061           4 WCPPGRKSGKGYFVYAKGS-KARPVNDGALAILKKYS---LQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPV   79 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD   79 (99)
                      +|++|||||+|||+|++++ +.+.+|+++..++...+   ......+++++|++||+++|+|||++||+|||+.++.|||
T Consensus       587 ~G~lG~KtG~GFY~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~R~l~~~~nEa~~~l~egI~~~~~diD  666 (742)
T 3zwc_A          587 AGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQRTISKEEILERCLYSLINEAFRILEEGMAARPEHID  666 (742)
T ss_dssp             TTCCBGGGTBSSSEESSTTCSCEECCHHHHHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             CCCccccCCCeeEECCCCCCccCCCChHHHHHHHHHhhhcCCCcCCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCHHHHH
Confidence            6999999999999998653 34568999888876543   1233568999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCC---cccccc
Q psy9061          80 YDHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        80 ~~~~~g~G~p~---gp~~~~   96 (99)
                      ++|++|+|||+   |||+..
T Consensus       667 ~a~~~G~Gfp~~~GGp~~~~  686 (742)
T 3zwc_A          667 VIYLHGYGWPRHKGGPMFYA  686 (742)
T ss_dssp             HHHHHHSCCCGGGCCHHHHH
T ss_pred             HHHHhCcCCCCCcCCHHHHH
Confidence            99999999999   999854

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.88  E-value=3.1e-23  Score=162.67  Aligned_cols=92  Identities=21%  Similarity=0.239  Sum_probs=75.3

Q ss_pred             CCCCccccCceeEeccC-CCCCCCCCHHHHHHHHhhc----cCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchH
Q psy9061           4 WCPPGRKSGKGYFVYAK-GSKARPVNDGALAILKKYS----LQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASP   78 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~-g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~di   78 (99)
                      +|++|||||+|||+|++ +++....++++.+++.+..    ..+ ..++.++|+|||+.+++|||++|++|||+.+++||
T Consensus       308 ~g~lG~k~g~Gfy~y~~~g~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dI  386 (463)
T 1zcj_A          308 AGRFGQKTGKGWYQYDKPLGRIHKPDPWLSTFLSQYREVHHIEQ-RTISKEEILERCLYSLINEAFRILEEGMAARPEHI  386 (463)
T ss_dssp             TTCCBGGGTBSSEEESSTTCSCEEECHHHHHHHHHHHHHTTCCC-CCCCHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHH
T ss_pred             CCCCeeecCCeeccCCCCCCCCCCCCHHHHHHHHHHHHHcCCCc-ccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            69999999999999964 3222346888777765432    112 23678999999999999999999999999889999


Q ss_pred             HHHHHhhcCCCC---cccccc
Q psy9061          79 VYDHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        79 D~~~~~g~G~p~---gp~~~~   96 (99)
                      |.+|++|+|||+   |||+..
T Consensus       387 D~a~~~G~G~p~~~gGP~~~~  407 (463)
T 1zcj_A          387 DVIYLHGYGWPRHKGGPMFYA  407 (463)
T ss_dssp             HHHHHHHSCCCGGGCCHHHHH
T ss_pred             HHHHHhCCCCCCCCcChHHHH
Confidence            999999999999   999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.87  E-value=1.1e-22  Score=160.76  Aligned_cols=49  Identities=22%  Similarity=0.104  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      +..+|+|||+.+|+|||++|++|||+ ||+|||.+|++|+|||+|||+..
T Consensus       385 ~~g~i~~Rll~~~~nEA~~~l~eGva-s~~diD~a~~~G~G~P~GPl~~~  433 (483)
T 3mog_A          385 YPGMLIWRTVAMIINEALDALQKGVA-SEQDIDTAMRLGVNYPYGPLAWG  433 (483)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHSCCSSCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHHH
Confidence            35689999999999999999999998 99999999999999999999853

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.86  E-value=2.9e-22  Score=164.27  Aligned_cols=92  Identities=27%  Similarity=0.416  Sum_probs=76.4

Q ss_pred             CCCCccccCceeEecc-C--CCCCCCCCHHHHHHHHhhccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHH
Q psy9061           4 WCPPGRKSGKGYFVYA-K--GSKARPVNDGALAILKKYSLQPQSALKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVY   80 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~-~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~   80 (99)
                      +|++|||||+|||+|+ +  +++++.+|+++.+++...+. +...++.++|++|++.+++|||++||+|||+.+++|||+
T Consensus       578 ~g~lG~k~g~GfY~y~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~  656 (715)
T 1wdk_A          578 AKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKPIVY-EQRDVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADM  656 (715)
T ss_dssp             TTCCBTTTTBSSSEEC-------CEECCTHHHHHHGGGCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHH
T ss_pred             CchhhhcCCcEEEecccCcCCCCcCCCCHHHHHHHhhhcc-CccCCCHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence            6999999999999996 3  32234589999888864332 122368899999999999999999999999999999999


Q ss_pred             HHHhhcCCCC---cccccc
Q psy9061          81 DHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        81 ~~~~g~G~p~---gp~~~~   96 (99)
                      +|++|+|||+   |||+..
T Consensus       657 ~~~~G~g~p~~~GGp~~~~  675 (715)
T 1wdk_A          657 GLVYGIGFPLFRGGALRYI  675 (715)
T ss_dssp             HHHHHTCCCGGGCCHHHHH
T ss_pred             HHHhCCCCCCCCCCHHHHH
Confidence            9999999999   999754

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.83  E-value=9.6e-22  Score=161.52  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=56.5

Q ss_pred             CCCCCccccCceeEeccCCCCCCCCCHHHHHHHHhhcc-CC----c--cccCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q psy9061           3 FWCPPGRKSGKGYFVYAKGSKARPVNDGALAILKKYSL-QP----Q--SALKDEDLQLRMVSRFVNEAVLCLEETILNSP   75 (99)
Q Consensus         3 ~~grlGrKtG~GfY~Y~~g~~~~~~~~~~~~~~~~~~~-~~----~--~~~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~   75 (99)
                      -+|++|||||+|||+|+ ++++..+|+++..++...+. .+    .  ..++.++|++|++.+++|||++|++|||+.++
T Consensus       573 ~~g~lG~k~g~GfY~y~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~r~l~~~~nea~~~l~egi~~~~  651 (725)
T 2wtb_A          573 EDKRAGEATRKGFYLYD-DKRKAKPDPELKKYIEKARSISGVKLDPKLANLSEKDIIEMTFFPVVNEACRVFAEGIAVKA  651 (725)
T ss_dssp             TTC----------------------CCCCCTTSHHHHHHTCCSCCCTTTTCCHHHHHHHHHHHHHHHHHHHHHTTSSSCH
T ss_pred             HCCCceecCCceeEeCC-CCccCCCCHHHHHHHHhhhhhccccchhhcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence            36999999999999995 43222366665444332110 00    0  13678999999999999999999999999999


Q ss_pred             chHHHHHHhhcCCCC---cccccc
Q psy9061          76 ASPVYDHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        76 ~diD~~~~~g~G~p~---gp~~~~   96 (99)
                      +|||++|++|+|||+   |||+..
T Consensus       652 ~diD~~~~~G~g~p~~~GGp~~~~  675 (725)
T 2wtb_A          652 ADLDIAGIMGMGFPPYRGGIMFWA  675 (725)
T ss_dssp             HHHHHHHHHHHCCCGGGCCHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCCHHHHH
Confidence            999999999999999   999754

>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}

Probab=99.61  E-value=1.8e-16  Score=103.34  Aligned_cols=49  Identities=20%  Similarity=0.068  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      +..+|+|||+.+++|||++|++|||+ |++|||.+|++|+|||+|||+..
T Consensus        15 ~~gfi~nRll~~~~~eA~~ll~eGva-~~~dID~a~~~g~G~p~GPf~~~   63 (110)
T 3ctv_A           15 TDKINPMDFTFVEINEAVKLVEMGVA-TPQDIDTAIKLGLNRPFGPFELA   63 (110)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHTTCSSCHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHcCCCCccHHHHH
Confidence            45689999999999999999999999 99999999999999999999864

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.05  E-value=3e-11  Score=91.41  Aligned_cols=49  Identities=20%  Similarity=0.111  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCC---Ccccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLE---PGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p---~gp~~~~   96 (99)
                      ...+|+|||+.+++|||+++++||++ |++|||.+|..|+|+|   ||||++.
T Consensus       190 ~pGFi~NRl~~~~~~EA~~lv~eGva-s~edID~~~~~g~g~~~a~mGPf~~~  241 (319)
T 3ado_A          190 IDGFVLNRLQYAIISEAWRLVEEGIV-SPSDLDLVMSDGLGMRYAFIGPLETM  241 (319)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHTTHHHHHTTSCHHHHH
T ss_pred             CCCEeHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhCCCCCCCCcchhhhh
Confidence            56899999999999999999999999 9999999999999987   9999864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.90  E-value=6.7e-10  Score=81.27  Aligned_cols=49  Identities=12%  Similarity=0.087  Sum_probs=45.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|+||++.++++||+.++++|++ +|++||.++..++|+|+|||+..
T Consensus       188 ~~g~i~nr~~~~~~~ea~~l~~~g~~-~~~~id~~~~~~~g~~~Gp~~~~  236 (283)
T 4e12_A          188 KAGYVLNSLLVPLLDAAAELLVDGIA-DPETIDKTWRIGTGAPKGPFEIF  236 (283)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHCCSSCHHHHH
T ss_pred             CCCEEehHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhccCCCcCHHHHH
Confidence            45679999999999999999999999 99999999999999999999863

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.85  E-value=1.4e-09  Score=79.95  Aligned_cols=47  Identities=15%  Similarity=0.036  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRH   95 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~   95 (99)
                      ..++.||++.+++|||++++++|++ ++++||.++..|+|||+|||+.
T Consensus       203 ~g~i~nr~l~~~~~Ea~~l~~~g~~-~~~~id~~~~~g~g~p~GP~~~  249 (302)
T 1f0y_A          203 PGFIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPMGPFEL  249 (302)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSSCHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHhCCCCCCCHHHH
Confidence            3589999999999999999999999 9999999999999999999975

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.77  E-value=2.6e-09  Score=84.39  Aligned_cols=48  Identities=17%  Similarity=0.097  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ..+|+||++.+++|||+.++++|++ |+++||.++..++|||+|||+..
T Consensus       187 ~Gfi~Nr~l~~~~~Ea~~l~~~g~~-~~~~id~a~~~~~G~p~GP~~l~  234 (483)
T 3mog_A          187 PGFIVNRVARPYYSEAWRALEEQVA-APEVIDAALRDGAGFPMGPLELT  234 (483)
T ss_dssp             TTTTHHHHTHHHHHHHHHHHHTTCS-CHHHHHHHHHHTTCCSSCHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHhcCCCCCCHHHHH
Confidence            3589999999999999999999999 99999999999999999999863

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.68  E-value=1e-08  Score=80.95  Aligned_cols=47  Identities=9%  Similarity=-0.057  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHH-HcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCL-EETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l-~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ...+|+||++.++++||+.++ ++| + ++++||.++. ++|||||||+..
T Consensus       232 ~pGfi~Nril~~~~~EA~~l~~~~G-a-~~e~ID~a~~-~~G~pmGPf~l~  279 (460)
T 3k6j_A          232 CKSFVFNRLLHVYFDQSQKLMYEYG-Y-LPHQIDKIIT-NFGFLMGPMTVA  279 (460)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTSC-C-CHHHHHHHHH-HHTBSSCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCcCHHHHH
Confidence            357899999999999999999 666 6 8999999998 999999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.47  E-value=5.7e-08  Score=80.39  Aligned_cols=47  Identities=19%  Similarity=0.106  Sum_probs=42.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          47 KDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        47 ~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      +..+|+|||+.+++|||+++++|| + ++++||.++. ++|||+|||+..
T Consensus       495 ~pGFi~NRi~~~~~~ea~~l~~eG-~-~~~~id~a~~-~~G~pmGPf~l~  541 (742)
T 3zwc_A          495 CYGFVGNRMLAPYYNQGFFLLEEG-S-KPEDVDGVLE-EFGFKMGPFRVS  541 (742)
T ss_dssp             STTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHHH-HHTCSSCHHHHH
T ss_pred             CCCccHHHHhhHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCCChHHHH
Confidence            457999999999999999999999 4 6899999886 799999999864

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.44  E-value=4e-08  Score=73.33  Aligned_cols=45  Identities=18%  Similarity=0.079  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCC---cccccc
Q psy9061          50 DLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        50 ~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~---gp~~~~   96 (99)
                      +|+||++.++++||+.++++|+  ++++||.++..++|+|+   |||+..
T Consensus       174 fi~Nrll~~~~~EA~~l~~~Gv--~~e~id~~~~~g~g~~~~~~GP~~l~  221 (293)
T 1zej_A          174 SLVNRFNAAVLSEASRMIEEGV--RAEDVDRVWKHHLGLLYTLFGPLGNL  221 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTC--CHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence            8999999999999999999987  89999999999999999   999853

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.40  E-value=1.2e-07  Score=77.94  Aligned_cols=46  Identities=15%  Similarity=-0.013  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ..+|.||++.+++|||+.++++| + ++++||.++ .++|||||||+..
T Consensus       494 ~Gfi~Nril~~~~~Ea~~l~~~G-~-~~e~id~~~-~~~g~p~Gp~~l~  539 (725)
T 2wtb_A          494 TGFAVNRMFFPYTQAAMFLVECG-A-DPYLIDRAI-SKFGMPMGPFRLC  539 (725)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSSCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCCCHHHHH
Confidence            46799999999999999999999 6 899999999 8999999999863

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.36  E-value=1.8e-07  Score=76.79  Aligned_cols=46  Identities=7%  Similarity=-0.155  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      ..+|+||++.+++|||+.++++| + ++++||.++ .++|||+|||+..
T Consensus       496 ~Gfi~Nril~~~~~Ea~~l~~~G-~-~~~~id~~~-~~~G~p~Gp~~l~  541 (715)
T 1wdk_A          496 PGFLVNRVLFPYFGGFAKLVSAG-V-DFVRIDKVM-EKFGWPMGPAYLM  541 (715)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHH-HHHTCSSCHHHHH
T ss_pred             CChhhhHHHHHHHHHHHHHHHCC-C-CHHHHHHHH-HHcCCCCCHHHHH
Confidence            46799999999999999999999 6 899999999 8999999999863

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.27  E-value=4e-07  Score=71.17  Aligned_cols=45  Identities=20%  Similarity=0.139  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCccccc
Q psy9061          48 DEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRH   95 (99)
Q Consensus        48 ~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~   95 (99)
                      ..++.||++.++++||++++++| + ++++||.++. ++|||+|||+.
T Consensus       217 ~gfi~Nrll~~~~~ea~~l~~~G-~-~~~~id~~~~-~~g~p~Gp~~l  261 (463)
T 1zcj_A          217 YGFVGNRMLAPYYNQGFFLLEEG-S-KPEDVDGVLE-EFGFKMGPFRV  261 (463)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHTT-C-CHHHHHHHHH-HHTCSSCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcC-C-CHHHHHHHHH-HcCCCCcHHHH
Confidence            56799999999999999999999 6 8999999998 99999999975

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.50  E-value=2.1e-05  Score=58.48  Aligned_cols=17  Identities=35%  Similarity=0.544  Sum_probs=15.6

Q ss_pred             CCCCccccCceeEeccC
Q psy9061           4 WCPPGRKSGKGYFVYAK   20 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~   20 (99)
                      +|++|+|||+|||+|++
T Consensus       257 ~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          257 KGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             TTCCBGGGTBSSSBCCT
T ss_pred             CCCCccccCCEeeecCc
Confidence            69999999999999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	99
d1wdka1	124	a.100.1.3 (A:497-620) Fatty oxidation complex alph	2e-04
d1wdka2	95	a.100.1.3 (A:621-715) Fatty oxidation complex alph	7e-04

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 35.6 bits (81), Expect = 2e-04
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 8   GRKSGKGYFVYAKGSKARP---VNDGALAILKK 37
           G+K+GKG++ Y    K +    V+   L +LK 
Sbjct: 86  GQKNGKGFYAYEADKKGKQKKLVDSSVLEVLKP 118

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 95

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 33.7 bits (77), Expect = 7e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 48 DEDLQLRMVSRFVNEAVLCLEETILNSPA 76
          DED+   M+     E V CLE+ I+ + A
Sbjct: 4  DEDIINWMMIPLCLETVRCLEDGIVETAA 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	99
d1wdka2	95	Fatty oxidation complex alpha subunit, C-terminal	99.74
d1f0ya1	99	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.5
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	99.19
d1wdka1	124	Fatty oxidation complex alpha subunit, C-terminal	98.39

>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.74  E-value=5.9e-19  Score=111.83  Aligned_cols=51  Identities=25%  Similarity=0.318  Sum_probs=48.7

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCC---cccccc
Q psy9061          46 LKDEDLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEP---GHSRHV   96 (99)
Q Consensus        46 ~~~~~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~---gp~~~~   96 (99)
                      +++++|+|||+++++|||++|++|||+.|++|||.++++|+|||+   |||+.+
T Consensus         2 ~~d~~IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~   55 (95)
T d1wdka2           2 VTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYI   55 (95)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHH
Confidence            689999999999999999999999999899999999999999999   999754

>d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.7e-15  Score=93.59  Aligned_cols=46  Identities=15%  Similarity=0.060  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          50 DLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        50 ~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      +|+||++.+++|||++|++||++ ||++||.+++.++|||+|||+..
T Consensus         2 Fi~NRil~~~~~ea~~ll~eG~a-~~~~iD~~~~~~~G~p~Gpf~~~   47 (99)
T d1f0ya1           2 FIVNRLLVPYLMEAIRLYERGDA-SKEDIDTAMKLGAGYPMGPFELL   47 (99)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHCCSSCHHHHH
T ss_pred             eehHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcccCCCCchHHHH
Confidence            57999999999999999999998 89999999999999999999864

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.19  E-value=3.7e-12  Score=83.08  Aligned_cols=44  Identities=7%  Similarity=-0.117  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHhhcCCCCcccccc
Q psy9061          50 DLQLRMVSRFVNEAVLCLEETILNSPASPVYDHHLDGNLEPGHSRHV   96 (99)
Q Consensus        50 ~i~~Rll~~~vnEA~~~l~eGv~~s~~diD~~~~~g~G~p~gp~~~~   96 (99)
                      +|+|||+.+++|||+++++||+  +|++||.++. ++|||+|||+..
T Consensus         2 Fi~NRi~~~~~~ea~~ll~eG~--~~~~ID~a~~-~~G~p~Gpf~l~   45 (124)
T d1wdka1           2 FLVNRVLFPYFGGFAKLVSAGV--DFVRIDKVME-KFGWPMGPAYLM   45 (124)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHH-HHTCSSCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHh-hccCCCCHHHHH
Confidence            5899999999999999999995  5899999986 899999999864

>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: HCDH C-domain-like
domain: Fatty oxidation complex alpha subunit, C-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.39  E-value=3.5e-08  Score=63.73  Aligned_cols=33  Identities=33%  Similarity=0.617  Sum_probs=22.5

Q ss_pred             CCCCccccCceeEeccCCCC---CCCCCHHHHHHHH
Q psy9061           4 WCPPGRKSGKGYFVYAKGSK---ARPVNDGALAILK   36 (99)
Q Consensus         4 ~grlGrKtG~GfY~Y~~g~~---~~~~~~~~~~~~~   36 (99)
                      .|++|+|||+|||+|+++++   .+.+++++.++++
T Consensus        82 ~g~lG~Ktg~GFY~y~~~~~~~~~~~~d~~~~~~~~  117 (124)
T d1wdka1          82 AKRLGQKNGKGFYAYEADKKGKQKKLVDSSVLEVLK  117 (124)
T ss_dssp             TTCCBTTTTBSSSEEC-------CEECCTHHHHHHG
T ss_pred             cCCccccCCcEeeEcCCCCCCCCCCCCCHHHHHHHH
Confidence            59999999999999986543   2345677666654