Psyllid ID: psy9066

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
MWQMWGTNTRTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIMSIETDWDHYKRMKLVLVSFLYKYWYNVDHPVPHSCSLGLGRGSQGLFGVGSCAVVGFM
Secondary Structure (PSIPRED)
ccEEccccEEEcccccccccccccHHHHHHHHHHEEEEEEccccccccEEccccHHHHHHHHHHHHHHEEEccccEEEccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccEcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHEEEccccEEEEccccEEEccccHHHcHHHHcccccccccccccccccccccccccccccccccccHHHcHHHccccccccccccccccccccccccccHcccccccccccHHHccccEEEEccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEccc
Coil and Loop (DISEMBL)
mwqmwgtntrTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGihirpvgvwGKIVGSLCAIAGVltialpvpvivsnfnyfyhretdqedmqsqnfnhvtscpylpgtlgewlvdnsssrSRKVAAATGlvhndvgsswedmqsqnfnhvtscpylpgtlgqhmkksslsesssDMMELEEGLlfgrdystsltnkkllsnnnlslcnpkhnimsietDWDHYKRMKLVLVSFLYKYWynvdhpvphscslglgrgsqglfgvgscavvgfm
Flexible Loop (DISEMBL)
MWQMWGTNTRTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLlsnnnlslcnpkHNIMSIETDWDHYKRMKLVLVSFLYKYWYNVDHPVPHSCSLGLGRGSQGLFGVGSCAVVGFM
Low Complexity Region (SEG)
MWQMWGTNTRTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKsslsesssdmmeleegllFGRDYstsltnkkllsnnnlslCNPKHNIMSIETDWDHYKRMKLVLVSFLYKYWYNVDHPVPHSCSLGLGRGSQGLFGVGSCAVVGFM
Disordered region (IsUnstruct)
**QMWGTNTRTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET********NFNHVTSCPYLPGTLGEWLVD***********ATGLVHNDV***********FNHVTSCPYL**************************LLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIMSIETDWDHYKRMKLVLVSFLYKYWYNVDHPVPHSCSLGLGRGSQGLFGVGSCAVVG**
Disordered Region (DISOPRED)
MWQMWGTNTRTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY**********************************************************************************************************************************************RMKLVLVSFLYKYWYNVDHPVPHSCSLGLGRGSQGLFGVGSCAVVGFM
Disordered Region (DISEMBL)
MWQMWGTNTRTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNS********AATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQ**************MELEEGLLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIMSIETDWDHYKRMKLVLVSFLYKYWYNVDHPVPHSCSLGLGRGSQGLFGVGSCAVVGFM
Disordered Region (DISPRO)
*WQMWGTNTRTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDM***********************************************************************************DMMELEEGLLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIMSIETDWDHYKRMKLVLVSFLYKYWYNVDHPVPHSCSLGLGRGSQGLFGVGSCAVVGFM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWQMWGTNTRTELLFGIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIMSIETDWDHYKRMKLVLVSFLYKYWYNVDHPVPHSCSLGLGRGSQGLFGVGSCAVVGFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
P08510	655	Potassium voltage-gated c	yes	N/A	0.312	0.131	0.775	3e-34
P15385	655	Potassium voltage-gated c	yes	N/A	0.338	0.141	0.567	3e-22
Q61423	654	Potassium voltage-gated c	yes	N/A	0.338	0.142	0.567	3e-22
Q28527	654	Potassium voltage-gated c	N/A	N/A	0.338	0.142	0.567	3e-22
P22459	653	Potassium voltage-gated c	yes	N/A	0.338	0.142	0.567	3e-22
Q05037	660	Potassium voltage-gated c	yes	N/A	0.338	0.140	0.567	4e-22
P63142	499	Potassium voltage-gated c	no	N/A	0.421	0.232	0.460	4e-20
P63141	499	Potassium voltage-gated c	no	N/A	0.421	0.232	0.460	4e-20
Q28293	499	Potassium voltage-gated c	no	N/A	0.421	0.232	0.460	4e-20
P16389	499	Potassium voltage-gated c	no	N/A	0.421	0.232	0.460	5e-20

>sp|P08510|KCNAS_DROME Potassium voltage-gated channel protein Shaker OS=Drosophila melanogaster GN=Sh PE=1 SV=3

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 76/89 (85%), Gaps = 3/89 (3%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  + PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 429 IPDAFW--WAVVTMTTVGYG-DMTPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 485

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGE 114
           HRETDQE+MQSQNFNHVTSCPYLPGTLG+
Sbjct: 486 HRETDQEEMQSQNFNHVTSCPYLPGTLGQ 514

Voltage-dependent potassium channel involved in regulation of sleep need or efficiency. Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.
Drosophila melanogaster (taxid: 7227)

>sp|P15385|KCNA4_RAT Potassium voltage-gated channel subfamily A member 4 OS=Rattus norvegicus GN=Kcna4 PE=1 SV=1

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 4/97 (4%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 513 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 569

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
           HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct: 570 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 605

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|Q61423|KCNA4_MOUSE Potassium voltage-gated channel subfamily A member 4 OS=Mus musculus GN=Kcna4 PE=1 SV=2

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 4/97 (4%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 512 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 568

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
           HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct: 569 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 604

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Mus musculus (taxid: 10090)

>sp|Q28527|KCNA4_MUSPF Potassium voltage-gated channel subfamily A member 4 OS=Mustela putorius furo GN=KCNA4 PE=2 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 4/97 (4%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 512 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 568

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
           HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct: 569 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 604

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Mustela putorius furo (taxid: 9669)

>sp|P22459|KCNA4_HUMAN Potassium voltage-gated channel subfamily A member 4 OS=Homo sapiens GN=KCNA4 PE=1 SV=2

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 4/97 (4%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 511 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 567

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
           HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct: 568 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 603

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

>sp|Q05037|KCNA4_BOVIN Potassium voltage-gated channel subfamily A member 4 OS=Bos taurus GN=KCNA4 PE=2 SV=1

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 4/97 (4%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 519 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 575

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
           HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct: 576 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 611

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Bos taurus (taxid: 9913)

>sp|P63142|KCNA2_RAT Potassium voltage-gated channel subfamily A member 2 OS=Rattus norvegicus GN=Kcna2 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 361 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
           HRET+ E+ Q+Q +  VTSCP +P +      D   SRS    + +    +   V +S E
Sbjct: 418 HRETEGEE-QAQ-YLQVTSCPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 470

Query: 144 DMQSQNFN 151
           D + +N  
Sbjct: 471 DFREENLK 478

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Rattus norvegicus (taxid: 10116)

>sp|P63141|KCNA2_MOUSE Potassium voltage-gated channel subfamily A member 2 OS=Mus musculus GN=Kcna2 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 361 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
           HRET+ E+ Q+Q +  VTSCP +P +      D   SRS    + +    +   V +S E
Sbjct: 418 HRETEGEE-QAQ-YLQVTSCPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 470

Query: 144 DMQSQNFN 151
           D + +N  
Sbjct: 471 DFREENLK 478

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient. Regulates neuronal excitability and is involved in non-rapid eye movement (NREM) sleep.

Mus musculus (taxid: 10090)

>sp|Q28293|KCNA2_CANFA Potassium voltage-gated channel subfamily A member 2 OS=Canis familiaris GN=KCNA2 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 361 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
           HRET+ E+ Q+Q +  VTSCP +P +      D   SRS    + +    +   V +S E
Sbjct: 418 HRETEGEE-QAQ-YLQVTSCPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 470

Query: 144 DMQSQNFN 151
           D + +N  
Sbjct: 471 DFREENLK 478

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Canis familiaris (taxid: 9615)

>sp|P16389|KCNA2_HUMAN Potassium voltage-gated channel subfamily A member 2 OS=Homo sapiens GN=KCNA2 PE=1 SV=2

 Score = 98.6 bits (244), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 361 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
           HRET+ E+ Q+Q +  VTSCP +P +      D   SRS    + +    +   V +S E
Sbjct: 418 HRETEGEE-QAQ-YLQVTSCPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 470

Query: 144 DMQSQNFN 151
           D + +N  
Sbjct: 471 DFREENLK 478

Mediates the voltage-dependent potassium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
383866053	563	PREDICTED: potassium voltage-gated chann	0.48	0.234	0.487	2e-38
270004253	593	hypothetical protein TcasGA2_TC003580 [T	0.48	0.222	0.522	2e-37
189235374	549	PREDICTED: similar to Shaker CG12348-PC	0.48	0.240	0.522	3e-37
347963466	612	AGAP000254-PB [Anopheles gambiae str. PE	0.389	0.174	0.540	2e-36
2959684	522	potassium channel [Panulirus interruptus	0.476	0.250	0.472	8e-36
347963468	612	AGAP000254-PA [Anopheles gambiae str. PE	0.389	0.174	0.534	1e-35
170046737	770	voltage-gated potassium channel [Culex q	0.389	0.138	0.537	5e-35
307173075	523	Potassium voltage-gated channel protein	0.472	0.248	0.467	1e-34
84993578	492	potassium channel Kv1.1 [Nephila clavata	0.52	0.290	0.460	2e-34
312382560	247	hypothetical protein AND_04719 [Anophele	0.312	0.348	0.583	3e-34

>gi|383866053|ref|XP_003708486.1| PREDICTED: potassium voltage-gated channel protein Shaker-like [Megachile rotundata]

 Score =  165 bits (418), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 111/203 (54%), Gaps = 71/203 (34%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  + PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 425 IPDAFW--WAVVTMTTVGYG-DMTPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 481

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQE+MQSQNFNHVTSCPYLPGTLG+                               
Sbjct: 482 HRETDQEEMQSQNFNHVTSCPYLPGTLGQ------------------------------- 510

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNN 205
                               H+KKS +SESSSD+MELEEG+L      T   N       
Sbjct: 511 --------------------HVKKSPMSESSSDIMELEEGILLPHPEITKKPN------- 543

Query: 206 NLSLCNPKHN------IMSIETD 222
               CNP+HN       MSIETD
Sbjct: 544 ----CNPRHNNNINPACMSIETD 562

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004253|gb|EFA00701.1| hypothetical protein TcasGA2_TC003580 [Tribolium castaneum]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 116/201 (57%), Gaps = 69/201 (34%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  + PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 457 IPDAFW--WAVVTMTTVGYG-DMTPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 513

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQE+MQSQNFNHVTSCPYLPGTLG                                
Sbjct: 514 HRETDQEEMQSQNFNHVTSCPYLPGTLG-------------------------------- 541

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNN 205
                              QHMKKSSLSESSSD++ELEEGLL  RD        +L+   
Sbjct: 542 -------------------QHMKKSSLSESSSDLVELEEGLLVTRD--------QLVRKQ 574

Query: 206 NLSLCNPKH----NIMSIETD 222
           N   CNP+H    N MSIETD
Sbjct: 575 N---CNPRHNNNINAMSIETD 592

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235374|ref|XP_001809693.1| PREDICTED: similar to Shaker CG12348-PC [Tribolium castaneum]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/201 (52%), Positives = 116/201 (57%), Gaps = 69/201 (34%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  + PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 413 IPDAFW--WAVVTMTTVGYG-DMTPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 469

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQE+MQSQNFNHVTSCPYLPGTLG                                
Sbjct: 470 HRETDQEEMQSQNFNHVTSCPYLPGTLG-------------------------------- 497

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNN 205
                              QHMKKSSLSESSSD++ELEEGLL  RD        +L+   
Sbjct: 498 -------------------QHMKKSSLSESSSDLVELEEGLLVTRD--------QLVRKQ 530

Query: 206 NLSLCNPKH----NIMSIETD 222
           N   CNP+H    N MSIETD
Sbjct: 531 N---CNPRHNNNINAMSIETD 548

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963466|ref|XP_003436950.1| AGAP000254-PB [Anopheles gambiae str. PEST] gi|333467186|gb|EGK96496.1| AGAP000254-PB [Anopheles gambiae str. PEST]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/161 (54%), Positives = 98/161 (60%), Gaps = 54/161 (33%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  +RPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 385 IPDAFW--WAVVTMTTVGYG-DMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 441

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQ                                                   E+M
Sbjct: 442 HRETDQ---------------------------------------------------EEM 450

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGL 186
           QSQNFNHVTSCPYLPGTLGQH+KK+SLSESSSDMM+LE+G+
Sbjct: 451 QSQNFNHVTSCPYLPGTLGQHLKKTSLSESSSDMMDLEDGV 491

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2959684|gb|AAC05909.1| potassium channel [Panulirus interruptus]

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/201 (47%), Positives = 107/201 (53%), Gaps = 70/201 (34%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  + PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 387 IPDAFW--WAVVTMTTVGYG-DMTPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 443

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQE+MQSQNFNHVTSCPYLPGT+G+ L  +S S S                     
Sbjct: 444 HRETDQEEMQSQNFNHVTSCPYLPGTVGQHLKKDSLSES--------------------- 482

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNN 205
                                         SSD+MELEEG+L   D S            
Sbjct: 483 ------------------------------SSDIMELEEGMLLQHDLSKKQN-------- 504

Query: 206 NLSLCNPKH----NIMSIETD 222
               CNP+H    N MSIETD
Sbjct: 505 ----CNPRHNNNINAMSIETD 521

Source: Panulirus interruptus

Species: Panulirus interruptus

Genus: Panulirus

Family: Palinuridae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963468|ref|XP_310869.5| AGAP000254-PA [Anopheles gambiae str. PEST] gi|333467185|gb|EAA06439.5| AGAP000254-PA [Anopheles gambiae str. PEST]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 97/161 (60%), Gaps = 54/161 (33%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  + PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 385 IPDAFW--WAVVTMTTVGYG-DMTPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 441

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQ                                                   E+M
Sbjct: 442 HRETDQ---------------------------------------------------EEM 450

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGL 186
           QSQNFNHVTSCPYLPGTLGQH+KK+SLSESSSDMM+LE+G+
Sbjct: 451 QSQNFNHVTSCPYLPGTLGQHLKKTSLSESSSDMMDLEDGV 491

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170046737|ref|XP_001850908.1| voltage-gated potassium channel [Culex quinquefasciatus] gi|167869408|gb|EDS32791.1| voltage-gated potassium channel [Culex quinquefasciatus]

 Score =  154 bits (388), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/162 (53%), Positives = 98/162 (60%), Gaps = 55/162 (33%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  +RPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 7   IPDAFW--WAVVTMTTVGYG-DMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 63

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQ                                                   E+M
Sbjct: 64  HRETDQ---------------------------------------------------EEM 72

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKK-SSLSESSSDMMELEEGL 186
           QSQNFNHVTSCPYLPGTLGQH+KK +SLSESSSDMM+LE+G+
Sbjct: 73  QSQNFNHVTSCPYLPGTLGQHLKKNNSLSESSSDMMDLEDGV 114

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173075|gb|EFN64205.1| Potassium voltage-gated channel protein Shaker [Camponotus floridanus]

 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 105/203 (51%), Gaps = 73/203 (35%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  +RPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 387 IPDAFW--WAVVTMTTVGYG-DMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 443

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQE+MQSQNFNHVTSCPYLPGTLG   +  S S S                     
Sbjct: 444 HRETDQEEMQSQNFNHVTSCPYLPGTLGLKKISMSESSS--------------------- 482

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNN 205
                                           D+MELEEG LF     T  +N       
Sbjct: 483 --------------------------------DIMELEEGTLFTHPEITKKSN------- 503

Query: 206 NLSLCNPKHN------IMSIETD 222
               CNP+HN       MSIETD
Sbjct: 504 ----CNPRHNNNINPACMSIETD 522

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|84993578|dbj|BAE75953.1| potassium channel Kv1.1 [Nephila clavata]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/202 (46%), Positives = 108/202 (53%), Gaps = 59/202 (29%)

Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   T T + +G  +RPVGVWGK+VGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 344 IPDAFW--WAVVTMTTVGYG-DMRPVGVWGKLVGSLCAIAGVLTIALPVPVIVSNFNYFY 400

Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDM 145
           HRETDQE+MQSQNFNHVTSCPYLPGT+G  L  +S S S                     
Sbjct: 401 HRETDQEEMQSQNFNHVTSCPYLPGTVGAKLKRDSVSES--------------------- 439

Query: 146 QSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFG-RDYSTSLTNKKLLSN 204
                                         +SD+MELEEG+L    ++   L N      
Sbjct: 440 ------------------------------ASDIMELEEGMLLSVENHHVQLGNYHQQLQ 469

Query: 205 NNLSLCNPKH----NIMSIETD 222
                CNP H    N +SIETD
Sbjct: 470 QKKPNCNPLHNNNINAVSIETD 491

Source: Nephila clavata

Species: Nephila clavata

Genus: Nephila

Family: Nephilidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382560|gb|EFR27976.1| hypothetical protein AND_04719 [Anopheles darlingi]

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 86/137 (62%), Gaps = 51/137 (37%)

Query: 50  PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTSCPYLP 109
           PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQ                  
Sbjct: 36  PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQ------------------ 77

Query: 110 GTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKK 169
                                            E+MQSQNFNHVTSCPYLPGTLGQH+KK
Sbjct: 78  ---------------------------------EEMQSQNFNHVTSCPYLPGTLGQHLKK 104

Query: 170 SSLSESSSDMMELEEGL 186
           +SLSESSSDMM+LE+G+
Sbjct: 105 TSLSESSSDMMDLEDGV 121

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
FB|FBgn0003380	655	Sh "Shaker" [Drosophila melano	0.349	0.146	0.727	1.3e-33
UNIPROTKB|Q9YGX8	662	KCNA4 "Uncharacterized protein	0.338	0.140	0.577	5.5e-22
UNIPROTKB|I3L9C7	596	KCNA4 "Uncharacterized protein	0.338	0.156	0.567	9.2e-22
UNIPROTKB|P22459	653	KCNA4 "Potassium voltage-gated	0.338	0.142	0.567	1.1e-21
UNIPROTKB|F1SGM9	654	LOC100037947 "Uncharacterized	0.338	0.142	0.567	1.1e-21
MGI|MGI:96661	654	Kcna4 "potassium voltage-gated	0.338	0.142	0.567	1.1e-21
RGD|2952	655	Kcna4 "potassium voltage-gated	0.338	0.141	0.567	1.1e-21
UNIPROTKB|P15385	655	Kcna4 "Potassium voltage-gated	0.338	0.141	0.567	1.1e-21
UNIPROTKB|Q05037	660	KCNA4 "Potassium voltage-gated	0.338	0.140	0.567	1.2e-21
UNIPROTKB|F1MFZ3	661	KCNA4 "Potassium voltage-gated	0.338	0.140	0.567	1.2e-21

FB|FBgn0003380 Sh "Shaker" [Drosophila melanogaster (taxid:7227)]

 Score = 372 (136.0 bits), Expect = 1.3e-33, P = 1.3e-33
 Identities = 72/99 (72%), Positives = 81/99 (81%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  + PVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   429 IPDAFW--WAVVTMTTVGYG-DMTPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 485

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRS 124
             HRETDQE+MQSQNFNHVTSCPYLPGTLG+ +  +S S S
Sbjct:   486 HRETDQEEMQSQNFNHVTSCPYLPGTLGQHMKKSSLSES 524

GO:0007629 "flight behavior" evidence=IMP

GO:0005249 "voltage-gated potassium channel activity" evidence=ISS;NAS;TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=NAS;TAS;IPI

GO:0016021 "integral to membrane" evidence=IDA;NAS

GO:0006813 "potassium ion transport" evidence=IEA;NAS;TAS

GO:0007619 "courtship behavior" evidence=NAS;TAS

GO:0007611 "learning or memory" evidence=NAS

GO:0048150 "behavioral response to ether" evidence=NAS

GO:0050909 "sensory perception of taste" evidence=NAS

GO:0022843 "voltage-gated cation channel activity" evidence=IDA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048675 "axon extension" evidence=IMP

GO:0030431 "sleep" evidence=IMP

GO:0007637 "proboscis extension reflex" evidence=IMP

GO:0009584 "detection of visible light" evidence=IMP

GO:0060025 "regulation of synaptic activity" evidence=IMP

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0001508 "regulation of action potential" evidence=IMP

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=IMP

GO:0048047 "mating behavior, sex discrimination" evidence=IDA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

UNIPROTKB|Q9YGX8 KCNA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 265 (98.3 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 56/97 (57%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   520 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 576

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    +SSS
Sbjct:   577 HRETENEE-QTQLMQNAVSCPYLPTNLLKKFRSSSSS 612

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

UNIPROTKB|I3L9C7 KCNA4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 9.2e-22, P = 9.2e-22
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   455 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 511

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct:   512 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 547

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

UNIPROTKB|P22459 KCNA4 "Potassium voltage-gated channel subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   511 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 567

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct:   568 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 603

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005249 "voltage-gated potassium channel activity" evidence=TAS

GO:0006813 "potassium ion transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

UNIPROTKB|F1SGM9 LOC100037947 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   513 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 569

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct:   570 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 605

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

MGI|MGI:96661 Kcna4 "potassium voltage-gated channel, shaker-related subfamily, member 4" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   512 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 568

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct:   569 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 604

GO:0005216 "ion channel activity" evidence=ISO

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=ISO

GO:0005267 "potassium channel activity" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

RGD|2952 Kcna4 "potassium voltage-gated channel, shaker-related subfamily, member 4" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   513 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 569

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct:   570 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 605

GO:0005216 "ion channel activity" evidence=IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA;IDA

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0005267 "potassium channel activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0030955 "potassium ion binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|P15385 Kcna4 "Potassium voltage-gated channel subfamily A member 4" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   513 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 569

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct:   570 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 605

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

UNIPROTKB|Q05037 KCNA4 "Potassium voltage-gated channel subfamily A member 4" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   519 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 575

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct:   576 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 611

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

UNIPROTKB|F1MFZ3 KCNA4 "Potassium voltage-gated channel subfamily A member 4" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 1.2e-21, P = 1.2e-21
 Identities = 55/97 (56%), Positives = 69/97 (71%)

Query:    26 VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
             + +A W  W   T T + +G  ++P+ V GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct:   520 IPDAFW--WAVVTMTTVGYG-DMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 576

Query:    86 HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSS 122
             HRET+ E+ Q+Q   +  SCPYLP  L +    ++SS
Sbjct:   577 HRETENEE-QTQLTQNAVSCPYLPSNLLKKFRSSTSS 612

GO:0005251 "delayed rectifier potassium channel activity" evidence=IBA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
KOG1545|consensus	507		99.83
KOG3713|consensus	477		99.74
KOG4390|consensus	632		99.53
KOG1419|consensus	654		99.51
PRK10537	393	voltage-gated potassium channel; Provisional	99.51
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	99.31
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.29
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.06
KOG1418|consensus	433		98.69
KOG1420|consensus	1103		98.63
KOG0498|consensus	727		98.42
KOG4404|consensus	350		97.79
KOG3684|consensus	489		97.6
KOG3827|consensus	400		97.56
KOG1418|consensus	433		97.35
KOG0501|consensus	971		97.28
KOG4404|consensus	350		97.27
PF00520	200	Ion_trans: Ion transport protein calcium channel s	96.95
KOG3193|consensus	1087		96.43
KOG0500|consensus	536		95.12
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	92.45
KOG0499|consensus	815		83.39

>KOG1545|consensus

Probab=99.83  E-value=2.8e-22  Score=192.92  Aligned_cols=92  Identities=55%  Similarity=0.911  Sum_probs=81.2

Q ss_pred             eeEEeeec--ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q psy9066          12 ELLFGIHI--RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET   89 (275)
Q Consensus        12 ~LLfGt~g--~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~k   89 (275)
                      +++|....  ...|.||+||||  |++||||||||| |++|.|+.|||++.+|+++||+++|+|+++|+++|+++|+|++
T Consensus       378 avYFAEade~~S~F~SIPdaFW--wavVTMTTVGYG-Dm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEt  454 (507)
T KOG1545|consen  378 AVYFAEADEPESHFSSIPDAFW--WAVVTMTTVGYG-DMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRET  454 (507)
T ss_pred             eeeeeecCCCccCCCcCcccce--EEEEEEEeeccc-cceecccCceehhhHHhhhhheEecccccEEEecccceeeccc
Confidence            34444443  456799999999  999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhcCCCEEeCCCC
Q psy9066          90 DQEDMQSQNFNHVTSCPYL  108 (275)
Q Consensus        90 r~ek~~~~l~nHvIiCGy~  108 (275)
                      +.+++ .+ ..|+..|+.+
T Consensus       455 e~ee~-~~-~~~~~~~~~~  471 (507)
T KOG1545|consen  455 EGEEQ-AQ-YLHVDSCQDI  471 (507)
T ss_pred             cchhh-hc-ccccccCCCC
Confidence            98874 33 7788888885

>KOG3713|consensus

Probab=99.74  E-value=1.5e-18  Score=170.42  Aligned_cols=77  Identities=34%  Similarity=0.676  Sum_probs=70.6

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN  100 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n  100 (275)
                      ..|+|||.++|  |++||||||||| |++|+|..||+++.++++.||+++|+|+++|+++|...|++++..++..++-+.
T Consensus       373 ~~FtSIPa~~W--WaiVTMTTVGYG-Dm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~~~~  449 (477)
T KOG3713|consen  373 TKFTSIPAGFW--WAVVTMTTVGYG-DMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKRREA  449 (477)
T ss_pred             CCCccccchhh--eeeEEEeeeccc-CccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhhhcc
Confidence            45899999999  999999999999 999999999999999999999999999999999999999998877776555333

>KOG4390|consensus

Probab=99.53  E-value=3.7e-16  Score=152.37  Aligned_cols=71  Identities=42%  Similarity=0.753  Sum_probs=65.9

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHH
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDM   94 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~   94 (275)
                      ..|++|+.|||  |++|||||+||| |++|.|.+||||+.+|.+.|+++||+|+++|+++|++.|++.+|..|.
T Consensus       352 t~FTsIPaaFW--YTIVTmTTLGYG-DMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRADKR  422 (632)
T KOG4390|consen  352 TKFTSIPAAFW--YTIVTMTTLGYG-DMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKR  422 (632)
T ss_pred             cccccCcHhHh--hheeeeeecccc-ccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhhhHH
Confidence            45799999999  999999999999 999999999999999999999999999999999999999986555443

>KOG1419|consensus

Probab=99.51  E-value=9.9e-15  Score=146.06  Aligned_cols=77  Identities=22%  Similarity=0.422  Sum_probs=71.2

Q ss_pred             eeecccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHh
Q psy9066          16 GIHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQ   95 (275)
Q Consensus        16 Gt~g~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~   95 (275)
                      |.-.+.+|.++.||+|  |++||+|||||| |++|+|+.||+++..+.++||.+||+|.+++.+.|+...++++|||.-.
T Consensus       260 ~e~~n~~F~TyADALW--WG~ITltTIGYG-Dk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~  336 (654)
T KOG1419|consen  260 GEGTNDEFPTYADALW--WGVITLTTIGYG-DKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFN  336 (654)
T ss_pred             cccccccchhHHHHHH--hhheeEEeeccC-CcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHH
Confidence            4446788999999999  999999999999 9999999999999999999999999999999999999998888877543

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.51  E-value=1.9e-14  Score=138.37  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=70.4

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHhhhhHHHhhhcCC
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY-FYHRETDQEDMQSQNFN  100 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~-~y~r~kr~ek~~~~l~n  100 (275)
                      .+.++.||||  |+++|+|||||| |+.|.|..||+++++++++|++++++.++.+...+.. ..++..+.++.....++
T Consensus       165 ~~~s~~dA~y--~svvt~tTvGyG-di~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~~~~~~k~  241 (393)
T PRK10537        165 PIESLSTAFY--FSIVTMSTVGYG-DIVPVSESARLFTISVIILGITVFATSISAIFGPVIRGNLKRLVKGRISHMHRKD  241 (393)
T ss_pred             CCCCHHHHHH--hhheeeecccCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence            4579999999  999999999999 9999999999999999999999999988877654432 22222111111222479


Q ss_pred             CEEeCCCCCCCCCccccc
Q psy9066         101 HVTSCPYLPGTLGEWLVD  118 (275)
Q Consensus       101 HvIiCGy~~g~lge~I~~  118 (275)
                      |+++|||  ++.++.+.+
T Consensus       242 HvII~G~--g~lg~~v~~  257 (393)
T PRK10537        242 HFIICGH--SPLAINTYL  257 (393)
T ss_pred             eEEEECC--ChHHHHHHH
Confidence            9999999  666665543

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=99.31  E-value=1.8e-13  Score=129.75  Aligned_cols=156  Identities=14%  Similarity=0.126  Sum_probs=108.8

Q ss_pred             cchHHHHHHHhhhhceeeceeecCc--ceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066          23 QDLVVEAMWQMWGTNTRTELLFGIH--IRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN  100 (275)
Q Consensus        23 f~Si~DAfW~ywavVTmTTVGYG~D--I~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n  100 (275)
                      ..++.+||+  |++-|+||+||| .  +.|..+.+-++..+-++.|+++.|+.+|.+.+.|++-   ++|.+  .-...+
T Consensus        82 ~~~f~~aF~--FSveT~tTIGYG-~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP---~~R~~--tI~FS~  153 (336)
T PF01007_consen   82 VNSFTSAFL--FSVETQTTIGYG-SRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP---KKRAS--TILFSK  153 (336)
T ss_dssp             -TTHHHHHH--HHHHHHTT---S-SSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---CCGGG--SEEE-S
T ss_pred             ccchhhhee--EEEEEEEEeccC-CcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccccc--eEEEEe
Confidence            468999999  999999999999 8  5688899999999999999999999999999877632   11111  123567


Q ss_pred             CEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc--c-----CCCC--CCCcc-cccccC
Q psy9066         101 HVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV--T-----SCPY--LPGTL-GQHMKK  169 (275)
Q Consensus       101 HvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~--s-----~~p~--l~~~~-~~~~~~  169 (275)
                      +.++|++++..+-+....+-+.+...++ ....|.++....++|-++. +++++  .     ..|.  +||+| |+|+++
T Consensus       154 ~AVI~~~dG~~~LmfRv~n~R~~~liea~Vr~~l~~~~~t~eGe~~~~-~~~~L~l~~~~~~~~~~L~~p~tV~H~IDe~  232 (336)
T PF01007_consen  154 KAVIAPRDGKLCLMFRVANLRKNQLIEAHVRLYLIRDRVTKEGERIRL-RQQDLPLERDQGEDRPFLILPWTVVHVIDED  232 (336)
T ss_dssp             SEEEEEETTEEEEEEEEEESSSSSEEEEEEEEEEEEEEE-TTS-EEEE-EEEEEGSSTTTTTTBEEESSEEEEEEE-STT
T ss_pred             eeEEeecCCeeEEEEEecCCCcCeeecceEEEEEEEeeecCCCceEEe-eccccccccCCCCCceeeeCCEEEEEeCCCC
Confidence            8999999866666665555555555666 4444677777776666542 44433  2     2466  77888 999999


Q ss_pred             CCCCCCcchhhhhhhccc
Q psy9066         170 SSLSESSSDMMELEEGLL  187 (275)
Q Consensus       170 s~~~~~~~~~~e~~e~~~  187 (275)
                      ||+.+-+.|.|..++.|+
T Consensus       233 SPLy~~t~~~L~~~~~Ei  250 (336)
T PF01007_consen  233 SPLYGLTPEDLAQADFEI  250 (336)
T ss_dssp             STTTT--HHHHHCTTEEE
T ss_pred             CcchhhccchhccCcEEE
Confidence            999998888888887766

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.29  E-value=3.3e-12  Score=95.61  Aligned_cols=58  Identities=22%  Similarity=0.355  Sum_probs=50.6

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN   82 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~   82 (275)
                      +..++.||+|  |+++|+||+||| |+.|.|..||+++++.++.|+.++++.++.+.+.+.
T Consensus        21 ~~~~~~da~y--fs~~t~tTvGyG-Di~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen   21 EKWSFIDALY--FSFVTITTVGYG-DIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             STTSHHHHHH--HHHHHHTT---S-SSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHH--HHHHHHhcccCC-CccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4578999999  999999999999 999999999999999999999999999888876553

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.06  E-value=1.6e-10  Score=118.75  Aligned_cols=60  Identities=13%  Similarity=0.110  Sum_probs=54.3

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH   86 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~   86 (275)
                      ..|..|+|  |+++|||||||| |++|.|..+|+++++++++|++++|++++.+++.+.....
T Consensus       249 ~~Yi~slY--wai~TmtTVGYG-Di~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~  308 (823)
T PLN03192        249 IRYISAIY--WSITTMTTVGYG-DLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTR  308 (823)
T ss_pred             HHHHHHHH--HHHHHHhhccCC-CcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999  999999999999 9999999999999999999999999999999886655443

>KOG1418|consensus

Probab=98.69  E-value=2.5e-08  Score=90.29  Aligned_cols=62  Identities=19%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY   85 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y   85 (275)
                      ...+++.+|++  |+++++||+||| ++.|.|.+||+++++.+++||.++.+.++-+...+....
T Consensus       111 ~~~W~f~~al~--fs~tv~TTIGYG-~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~  172 (433)
T KOG1418|consen  111 TQQWSFSSALL--FSITVITTIGYG-NIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL  172 (433)
T ss_pred             CcceecchhHh--hhhheeeeccCC-cccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            34479999999  999999999999 999999999999999999999999988888777555443

>KOG1420|consensus

Probab=98.63  E-value=8e-09  Score=105.42  Aligned_cols=125  Identities=15%  Similarity=0.202  Sum_probs=82.3

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCEE
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVT  103 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~nHvI  103 (275)
                      -++.++.|  +.+|||+||||| |++-.|..||+|.+++++.|+++||-.++-|...+... ++. .-+.....=+.|++
T Consensus       287 ltyw~cvy--fl~vtmstvgyg-dvyc~t~lgrlfmvffil~glamfasyvpeiielignr-~ky-ggeyk~ehgkkhiv  361 (1103)
T KOG1420|consen  287 LTYWECVY--FLMVTMSTVGYG-DVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNR-KKY-GGEYKAEHGKKHIV  361 (1103)
T ss_pred             chhhheee--eeEEEeeecccc-ceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccc-ccc-CceeehhcCCeeEE
Confidence            56788888  999999999999 99999999999999999999999998888776543210 010 11111233478999


Q ss_pred             eCCCCC-CCCCcccccCCCCchhhhHhhhcccccCCC-Cchhhhcccccccc
Q psy9066         104 SCPYLP-GTLGEWLVDNSSSRSRKVAAATGLVHNDVG-SSWEDMQSQNFNHV  153 (275)
Q Consensus       104 iCGy~~-g~lge~I~~~~~s~~~~ea~a~~Lv~~di~-~~~e~~q~~~f~~~  153 (275)
                      +||+-. .....++.|.-.....+.+.+.-..||-.+ -|-|+.+-|.|..|
T Consensus       362 vcghityesvshflkdflhedrddvdvevvflhr~~pdleleglfkrhft~v  413 (1103)
T KOG1420|consen  362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELEGLFKRHFTQV  413 (1103)
T ss_pred             EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchHHHHhhheeeE
Confidence            999932 112223333222222233344445555555 45788877877644

>KOG0498|consensus

Probab=98.42  E-value=2.7e-07  Score=95.75  Aligned_cols=61  Identities=20%  Similarity=0.303  Sum_probs=56.1

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR   87 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r   87 (275)
                      .-|..|+|  |++.|||||||| |.+|.+..-++|+++.|++|.+++|+++|.+.+.+...+.|
T Consensus       293 ~kY~~aLy--w~l~tLstvG~g-~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR  353 (727)
T KOG0498|consen  293 LKYVYALY--WGLSTLSTVGYG-LVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSR  353 (727)
T ss_pred             HHHHHHHH--HHhhHhhhccCC-ccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHH
Confidence            46899999  999999999999 99999999999999999999999999999998877665554

>KOG4404|consensus

Probab=97.79  E-value=3.5e-05  Score=74.29  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=49.2

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCc--------chhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGV--------WGKIVGSLCAIAGVLTIALPVPVIVSNFNYF   84 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~--------~GRI~til~il~GI~ifAl~vgvI~s~f~~~   84 (275)
                      ++|+||+|  |.+||+||+||| |.++...        .-+.+..+.+++|+.+|+..+.+++-.|...
T Consensus       185 Wsyfds~Y--yCFITltTIGFG-DyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~  250 (350)
T KOG4404|consen  185 WSYFDSYY--YCFITLTTIGFG-DYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM  250 (350)
T ss_pred             cchhhhhh--eeeeeeeecccc-chhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999  999999999999 9998544        3566888999999999998888877666543

>KOG3684|consensus

Probab=97.60  E-value=7.4e-05  Score=74.67  Aligned_cols=55  Identities=27%  Similarity=0.312  Sum_probs=51.0

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF   81 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f   81 (275)
                      .++.+++|  ...+|.-++||| |++|.|.+||.++++..+.|.+.-|+.+++|.-.+
T Consensus       286 ~~~~nsmW--li~iTFlsiGYG-DiVP~TycGr~v~l~tGivGa~~sallvAvisRKL  340 (489)
T KOG3684|consen  286 INYLNSMW--LIAITFLSIGYG-DIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL  340 (489)
T ss_pred             HHHHhhHH--HHHHHHhhcccC-cccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            46899999  999999999999 99999999999999999999999999999887654

>KOG3827|consensus

Probab=97.56  E-value=6.3e-05  Score=73.76  Aligned_cols=152  Identities=16%  Similarity=0.090  Sum_probs=102.6

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCc--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcC
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGV--WGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNF   99 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~--~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~   99 (275)
                      ...++..||-  |++-|-||+||| -.++...  .+-++.++-++.|+++=|+++|.+.+..++-   +||.+.  -...
T Consensus       109 nV~sf~sAFL--FSiETQtTIGYG-~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP---kKRAeT--l~FS  180 (400)
T KOG3827|consen  109 NVHSFTSAFL--FSIETQTTIGYG-FRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP---KKRAET--LIFS  180 (400)
T ss_pred             eccchhhhhe--eeeeeeeeeecc-ccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---hhhhhe--eeec
Confidence            3478999999  999999999999 8777554  4566667777899999999999988765532   222222  1245


Q ss_pred             CCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccc-cc-----cCCCC--CCCcc-cccccC
Q psy9066         100 NHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFN-HV-----TSCPY--LPGTL-GQHMKK  169 (275)
Q Consensus       100 nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~-~~-----s~~p~--l~~~~-~~~~~~  169 (275)
                      +|.+||=-++-.+-.+...+-+..-..++ ...-|.+.-...|+|-+-.--+. +|     +.+|.  .|-++ |-|+++
T Consensus       181 ~~AVI~~RDGkLCLmfRVgdlRkShliea~Vraqlik~~~T~EGE~ipl~q~di~vg~d~g~d~~Flv~Plti~H~IDe~  260 (400)
T KOG3827|consen  181 DHAVIALRDGKLCLMFRVGDLRKSHLIEAHVRAQLIKTRVTKEGEVIPLHQTDIDVGFDTGSDRLFLVWPLTIYHVIDET  260 (400)
T ss_pred             cceEEEeeCCceEEEEEecCccccceeeEEEEEEEEEEcccCCcceeecceEEeecccCCCcCceEEEeceEEEEEcCCC
Confidence            78999987644455655554333344555 55566677777878777553222 22     45666  44466 999999


Q ss_pred             CCCCC-Ccchhhh
Q psy9066         170 SSLSE-SSSDMME  181 (275)
Q Consensus       170 s~~~~-~~~~~~e  181 (275)
                      ||+.+ +..++.+
T Consensus       261 SPLy~l~~~~l~~  273 (400)
T KOG3827|consen  261 SPLYDLSRQDLAK  273 (400)
T ss_pred             CchhhhChhhhhh
Confidence            99977 4455544

>KOG1418|consensus

Probab=97.35  E-value=5.1e-05  Score=68.85  Aligned_cols=48  Identities=25%  Similarity=0.407  Sum_probs=43.0

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchh--------HHHHHHHHHHHHHHHhhH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGK--------IVGSLCAIAGVLTIALPV   74 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GR--------I~til~il~GI~ifAl~v   74 (275)
                      .++++|||  |+++|+||+||| |++|.+..++        .+..++++.|...++...
T Consensus       241 w~f~~~~Y--f~fisltTIG~G-D~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  241 WSFIEAFY--FSFISLTTIGFG-DIVPRTLLGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             eeeEeeee--EEEEEeeeecCC-ccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence            78999999  999999999999 9999999988        578888888888887765

>KOG0501|consensus

Probab=97.28  E-value=0.0004  Score=71.93  Aligned_cols=59  Identities=20%  Similarity=0.244  Sum_probs=51.6

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY   85 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y   85 (275)
                      .-+..++|  |++..||||||| .|.|.|...|+|++.+|+.|-++.|.+.|-++..|...+
T Consensus       422 S~YissLY--fTMt~mttvGFG-NiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~  480 (971)
T KOG0501|consen  422 SAYISSLY--FTMTCMTTVGFG-NIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMT  480 (971)
T ss_pred             ceehhhhh--hhhhhhhccccc-ccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34788999  999999999999 999999999999999999999998888887776665443

>KOG4404|consensus

Probab=97.27  E-value=0.00019  Score=69.26  Aligned_cols=58  Identities=22%  Similarity=0.273  Sum_probs=49.8

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYF   84 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~   84 (275)
                      +.++-|||  |+.+-+||+||| .-.|.|..||+|.++.+++||..-.+....+...++.+
T Consensus        79 WkF~GaFY--Fa~TVItTIGyG-hstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~  136 (350)
T KOG4404|consen   79 WKFAGAFY--FATTVITTIGYG-HSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTF  136 (350)
T ss_pred             cccCcceE--EEEEEEeeeccC-CCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHH
Confidence            56788999  999999999999 99999999999999999999877777777666655543

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=96.95  E-value=0.00058  Score=55.10  Aligned_cols=58  Identities=26%  Similarity=0.267  Sum_probs=48.9

Q ss_pred             eecccccchHHHHHHHhhhhceeeceeecCcceec-----CcchhHHH-HHHHHHHHHHHHhhHHHH
Q psy9066          17 IHIRLTQDLVVEAMWQMWGTNTRTELLFGIHIRPV-----GVWGKIVG-SLCAIAGVLTIALPVPVI   77 (275)
Q Consensus        17 t~g~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~-----T~~GRI~t-il~il~GI~ifAl~vgvI   77 (275)
                      ...+..+.++..++|  |.+.++||.||| |+.|.     +..+.++. ++..+.++.++++.+|++
T Consensus       137 ~~~~~~f~~~~~s~~--~~~~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  137 IYGYENFDSFGESLY--WLFQTMTGEGWG-DVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             SSTHHHHSSHHHHHH--HHHHHHTTTTCC-CCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccc--ccccccccCCcc-ccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence            345667789999999  999999999999 99998     88999998 566667778889888764

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG3193|consensus

Probab=96.43  E-value=0.0013  Score=67.94  Aligned_cols=37  Identities=8%  Similarity=0.029  Sum_probs=31.1

Q ss_pred             hHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHH
Q psy9066          25 LVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAI   64 (275)
Q Consensus        25 Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il   64 (275)
                      .++.++|  |.+||++||||| |.+|--++.++..++++-
T Consensus       217 ~lf~s~y--~v~vtfstvgyg-d~~pd~w~sql~~vi~ic  253 (1087)
T KOG3193|consen  217 DLFTSFY--FVMVTFSTVGYG-DWYPDYWASQLCVVILIC  253 (1087)
T ss_pred             eeeeeEE--EEEEEEeecccc-ccccccchhhHHHHHHHH
Confidence            4677888  999999999999 999999988887665443

>KOG0500|consensus

Probab=95.12  E-value=0.038  Score=56.27  Aligned_cols=55  Identities=22%  Similarity=0.160  Sum_probs=47.5

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN   82 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~   82 (275)
                      .-+.-+||  |+.-|+||+| - --.|.|..--+|.++=.++|+++||.++|-+.+.++
T Consensus       182 ReY~~S~Y--WStLTlTTiG-e-~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVt  236 (536)
T KOG0500|consen  182 REYLYSLY--WSTLTLTTIG-E-QPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVT  236 (536)
T ss_pred             HHHHHHHH--HHhhhhhhcc-C-CCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHH
Confidence            34777899  9999999998 2 567899999999999999999999999988777543

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=92.45  E-value=0.2  Score=40.02  Aligned_cols=57  Identities=18%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             cchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066          23 QDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY   83 (275)
Q Consensus        23 f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~   83 (275)
                      ..++.+++|  +++.+++. .-+ +..|.+..+|++.+.+.++.+++.+..++.+++.+..
T Consensus        42 ~~~~~~~~~--~~~~~~~~-q~~-~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~   98 (148)
T PF00060_consen   42 RFSLSNSFW--YTFGTLLQ-QGS-SIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV   98 (148)
T ss_dssp             HHHHHHHHH--HCCCCCHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHH--HHHHhhcc-ccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            357889999  88877765 445 8999999999999999999999999999999987764

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>KOG0499|consensus

Probab=83.39  E-value=0.98  Score=47.73  Aligned_cols=49  Identities=14%  Similarity=0.234  Sum_probs=42.5

Q ss_pred             hHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHH
Q psy9066          25 LVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVI   77 (275)
Q Consensus        25 Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI   77 (275)
                      .|..+||  |++-|+||+| | --.|.|...-+|-.+--++||++|++++|-+
T Consensus       403 ~YiRCyy--fa~kt~~tiG-~-~P~P~~~~E~Vf~~~~w~mGVFvFslliGQm  451 (815)
T KOG0499|consen  403 EYIRCYY--FAVKTLITIG-G-LPEPQTLFEIVFQLLNWFMGVFVFSLLIGQM  451 (815)
T ss_pred             ceeeehh--hHHHHHHHhc-C-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889  9999999999 7 7889998777787777889999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
3lut_B	499	A Structural Model For The Full-Length Shaker Potas		5e-21
2a79_B	499	Mammalian Shaker Kv1.2 Potassium Channel- Beta Subu		5e-21
2r9r_B	514	Shaker Family Voltage Dependent Potassium Channel (		3e-20
3lnm_B	514	F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Chan		4e-20

>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium Channel Kv1.2 Length = 499

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)
Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 361 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417
Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
           HRET+ E+ Q+Q +  VTSCP +P +      D   SRS    + +    +   V +S E
Sbjct: 418 HRETEGEE-QAQ-YLQVTSCPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 470
Query: 144 DMQSQNFN 151
           D + +N  
Sbjct: 471 DFREENLK 478

>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit Complex Length = 499

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 78/128 (60%), Gaps = 12/128 (9%)
Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 361 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 417
Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
           HRET+ E+ Q+Q +  VTSCP +P +      D   SRS    + +    +   V +S E
Sbjct: 418 HRETEGEE-QAQ-YLQVTSCPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 470
Query: 144 DMQSQNFN 151
           D + +N  
Sbjct: 471 DFREENLK 478

>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel (Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With Beta Subunit Length = 514

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 376 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432
Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
           HRET+ E+ Q+Q +  VTS P +P +      D   SRS    + +    +   V +S E
Sbjct: 433 HRETEGEE-QAQ-YLQVTSSPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 485
Query: 144 DMQSQNFNHVTSC 156
           D + +N     S 
Sbjct: 486 DFREENLKTANST 498

>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel Length = 514

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 26  VVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 85
           + +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFY
Sbjct: 376 IPDAFW--WAVVSMTTVGYGDMV-PTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432
Query: 86  HRETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGL--VHNDVGSSWE 143
           HRET+ E+ Q+Q +  VTS P +P +      D   SRS    + +    +   V +S E
Sbjct: 433 HRETEGEE-QAQ-YLQVTSSPKIPSS-----PDLKKSRSASTISKSDYMEIQEGVNNSNE 485
Query: 144 DMQSQNFNHVTSC 156
           D + +N     S 
Sbjct: 486 DFREENLKTANST 498

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	1e-22
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	7e-17
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	4e-16
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	3e-15
2a9h_A	155	Voltage-gated potassium channel; potassium channel	3e-14
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	6e-14
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	3e-13
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	2e-12

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 95.9 bits (238), Expect = 1e-22
 Identities = 64/196 (32%), Positives = 86/196 (43%), Gaps = 61/196 (31%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
           +A W  W   + T + +G  + P  + GKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR
Sbjct: 378 DAFW--WAVVSMTTVGYG-DMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 434

Query: 88  ETDQEDMQSQNFNHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQS 147
           ET+ E+                                                      
Sbjct: 435 ETEGEEQAQY-------------------------------------------------- 444

Query: 148 QNFNHVTSCPYLPGTLGQHMKKSSLSESSSDMMELEEGLLFGRDYSTSLTNKKLLSNNNL 207
                VTS P +P +      +S+ + S SD ME++EG+    + S     ++ L   N 
Sbjct: 445 ---LQVTSSPKIPSSPDLKKSRSASTISKSDYMEIQEGV----NNSNEDFREENLKTANS 497

Query: 208 SLCNPKH-NIMSIETD 222
           +L N  + NI  + TD
Sbjct: 498 TLANTNYVNITKMLTD 513

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
           +AMW  W   T +   +G    P    G+++     ++G+    L   ++ + F     R
Sbjct: 164 QAMW--WAVVTLSTTGYG-DTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR 220

Query: 88  ETDQEDMQSQNFNHV 102
                + Q      +
Sbjct: 221 GDFVRNWQLVAAVPL 235

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 73.4 bits (180), Expect = 4e-16
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
            A+W  W   T T + +G  + PV +WG++V  +  +AG+ +  L    + + F     +
Sbjct: 70  RALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQ 126

Query: 88  ETDQEDMQSQ 97
           +  Q    S+
Sbjct: 127 QQQQFVRHSE 136

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
            A+W  W   T T + +G  + PV +WG++V  +  +AG+ +  L    + + F      
Sbjct: 43  RALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99

Query: 88  ETDQEDMQSQ 97
                   S+
Sbjct: 100 RRGHFVRHSE 109

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 67.9 bits (166), Expect = 3e-14
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
           +A+W  W   T T + +G  + PV +WG+ V  +  +AG+ +  L    + + F      
Sbjct: 87  DALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQE 143

Query: 88  ETDQEDMQSQ 97
                   S+
Sbjct: 144 RRGHFVRHSE 153

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 65.9 bits (161), Expect = 6e-14
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
            A+W  W   T T + +G  + PV +WG++V  +  +AG+ +  L    + + F      
Sbjct: 64  RALW--WACETATTVAYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 120

Query: 88  E 88
            
Sbjct: 121 R 121

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 87
           +A+W  W   T T + +G    PV   G+ V      AG+   AL    + ++F      
Sbjct: 43  DAIW--WSVETATTVGYG-DRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99

Query: 88  ETDQ 91
               
Sbjct: 100 RRGH 103

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 28  EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN 82
           +A+W  W   T T + +G  + P    GK++G    + G+  + L +  + + F 
Sbjct: 168 DALW--WAVVTATTVGYG-DVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.83
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.83
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.8
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.79
3sya_A	340	G protein-activated inward rectifier potassium CH;	99.7
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	99.67
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.56
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.53
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.52
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.52
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.5
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.49
1lnq_A	336	MTHK channels, potassium channel related protein;	99.46
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.4
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.37
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.36
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.35
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.34
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.34
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.32
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.22
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.09
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.07
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.03
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	98.62
3agw_A	208	KIR3.2, G protein-activated inward rectifier potas	96.06
1n9p_A	207	GIRK1, G protein-activated inward rectifier potass	95.96
2gix_A	208	Inward rectifier potassium channel 2; cytoplasmic	95.63
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	95.28
1u4f_A	270	Inward rectifier potassium channel 2; cytoplasmic	94.3
2xky_I	309	Inward rectifier potassium channel 2; ION channel,	93.77
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	93.57

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.83  E-value=1.6e-22  Score=185.81  Aligned_cols=154  Identities=14%  Similarity=0.179  Sum_probs=120.6

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN  100 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n  100 (275)
                      ..+.+++||||  |+++|+|||||| |++|.|+.||++++++++.|++++|++++.+++.|.+.   +   ++  .+..+
T Consensus        78 ~~~~s~~~a~y--fs~vT~tTvGYG-Di~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~---~---~r--~~fs~  146 (301)
T 1xl4_A           78 ARPGSFTDAFF--FSVQTMATIGYG-KLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP---T---AG--VLFSS  146 (301)
T ss_dssp             SCTTCHHHHHH--HHHHHHTTCCCS-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---C---CC--EEECS
T ss_pred             CCcCCHHHHHH--HhhhheeccCCC-CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---H---hh--hccCC
Confidence            34689999999  999999999999 99999999999999999999999999999998877531   1   11  45789


Q ss_pred             CEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc----cCCCC--CCCcc-cccccCCCC
Q psy9066         101 HVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV----TSCPY--LPGTL-GQHMKKSSL  172 (275)
Q Consensus       101 HvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~----s~~p~--l~~~~-~~~~~~s~~  172 (275)
                      |.++||+++..+-.....+.+.+...++ ....|....+..|+|.+  ++++++    +..|.  +||++ |.|+++||+
T Consensus       147 ~~vI~~~~g~~~l~~R~~n~r~~~li~a~vr~~l~~~~~t~eGe~~--~~~~~L~l~~~~~~~l~~p~~v~H~Id~~SPL  224 (301)
T 1xl4_A          147 RMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQEGMVF--RRFHDLTLTRSRSPIFSLSWTVMHPIDHHSPI  224 (301)
T ss_dssp             CEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTSCEE--EEEEECCCSCCEEEEECSEEEEEEECCTTCTT
T ss_pred             eEEEecCCCcceeeeeccccccceEEccEEEEEEEEeeEcCCCcEE--EEEeccccccCCeEEEEeeEEEEEecCCCCCc
Confidence            9999999854444444444334345555 44456666777777776  777765    55676  77888 999999999


Q ss_pred             CCCcchhhhhhhccc
Q psy9066         173 SESSSDMMELEEGLL  187 (275)
Q Consensus       173 ~~~~~~~~e~~e~~~  187 (275)
                      .+-+.|.|+.++.|+
T Consensus       225 ~~~s~~~L~~~~~ei  239 (301)
T 1xl4_A          225 YGETDETLRNSHSEF  239 (301)
T ss_dssp             TTCCHHHHHHHTCEE
T ss_pred             ccCCHhHHhcCCeEE
Confidence            999999888877654

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.83  E-value=9.3e-22  Score=183.64  Aligned_cols=153  Identities=16%  Similarity=0.167  Sum_probs=114.1

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCCC
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNH  101 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~nH  101 (275)
                      .+.++.+|||  |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.|.+..   ++     .+..+|
T Consensus        93 ~~~s~~~a~y--fs~vT~tTVGYG-Di~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~---~r-----~~fs~~  161 (333)
T 1p7b_A           93 SPPGFVGAFF--FSVETLATVGYG-DMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR---AK-----IMFARH  161 (333)
T ss_dssp             SSSSTHHHHH--HHTTTTTTCCCS-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CC-----CEECSC
T ss_pred             CCCcHHHhHh--hhheeeeecCCC-CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-----HHhCCC
Confidence            3568999999  999999999999 999999999999999999999999999999998776321   11     346899


Q ss_pred             EEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc----cCCCC--CCCcc-cccccCCCCC
Q psy9066         102 VTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV----TSCPY--LPGTL-GQHMKKSSLS  173 (275)
Q Consensus       102 vIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~----s~~p~--l~~~~-~~~~~~s~~~  173 (275)
                      .++||++...+......+.+.....++ ....|.......|+|-  .++|+++    +.+|.  +||++ |.|+++||+.
T Consensus       162 ~VI~~~~g~~~L~fRv~n~r~~~li~a~vr~~li~~~~t~eGe~--~~~~~~l~l~~~~~~~l~~~~tv~H~Id~~SPL~  239 (333)
T 1p7b_A          162 AIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSSEGYS--LMKIHDLKLVRNEHPIFLLGWNMMHVIDESSPLF  239 (333)
T ss_dssp             EEEEECSSSEEEEEEEECCSSCCCCEEEEEEECC------------CCEECCSGGGTTCSCCCCSSEEEEEECSTTSTTS
T ss_pred             EEEcCCCCcceEEEEecccccceEEeeEEEEEEEeeeecCCCcE--EeeeeecccccCCCeeEeeeEEEEEeCCCCCCcc
Confidence            999999865555555555444444445 4555666666775554  4667766    67788  68988 9999999999


Q ss_pred             CCcchhhhhhhccc
Q psy9066         174 ESSSDMMELEEGLL  187 (275)
Q Consensus       174 ~~~~~~~e~~e~~~  187 (275)
                      +-+.|.|+.++.|+
T Consensus       240 ~~s~~~L~~~~~ei  253 (333)
T 1p7b_A          240 GETPESLAEGRAML  253 (333)
T ss_dssp             SCCHHHHHHTTCEE
T ss_pred             ccCHhHHhcCCEEE
Confidence            98888888777654

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.80  E-value=3.7e-21  Score=178.48  Aligned_cols=154  Identities=16%  Similarity=0.083  Sum_probs=117.7

Q ss_pred             hHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCCCEEe
Q psy9066          25 LVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFNHVTS  104 (275)
Q Consensus        25 Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~nHvIi  104 (275)
                      ++++|||  |+++|||||||| |++|.|..||++++++++.|++++|++++.+++.|.+..+   +.+  .....+|.++
T Consensus        78 s~~~a~y--~s~vT~tTVGYG-Di~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~---r~~--~i~fS~~avI  149 (321)
T 2qks_A           78 GFGGAFF--FSVETLATVGYG-DMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK---RAE--TLMFSEHAVI  149 (321)
T ss_dssp             THHHHHH--HHHHHHTTCCCC-SSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC---GGG--TEEECSCEEE
T ss_pred             chhheee--eeeEEeccccCC-CcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhh--hhhcCCceEE
Confidence            9999999  999999999999 9999999999999999999999999999999988764322   111  2346889999


Q ss_pred             CCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-cccccCCCCC
Q psy9066         105 CPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQHMKKSSLS  173 (275)
Q Consensus       105 CGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~~~~s~~~  173 (275)
                      |+++...+-+....+.++....++ ....|.++....|+|-+.. ...++       +..|.  +||++ |.|+++||+.
T Consensus       150 ~~~~g~~~L~fRv~n~r~~~li~a~vr~~l~~~~~t~eGe~~~~-~~~~l~l~~d~~~~~~~l~~p~tv~H~Id~~SPL~  228 (321)
T 2qks_A          150 SMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPL-DQLELDVGFSTGADQLFLVSPLTICHVIDAKSPFY  228 (321)
T ss_dssp             EEETTEEEEEEEEEECSCCCEEEEEEEEEEEEEEECTTCCEEEE-EEEEECSSTTTTTTBCCCSSCEEEEEECSTTSTTT
T ss_pred             ecCCCceEEEEEecccccCeeeeeEEEEEEEEEEecCCCcEEEe-EEeeeecccCCCCCceEEEccEEEEEECCCCCCcc
Confidence            999865555555555444445555 4445777777887777652 22222       55677  67888 9999999999


Q ss_pred             CCcchhhhhhhccc
Q psy9066         174 ESSSDMMELEEGLL  187 (275)
Q Consensus       174 ~~~~~~~e~~e~~~  187 (275)
                      +-+.|.|+.++.|+
T Consensus       229 ~~~~~~L~~~~~ei  242 (321)
T 2qks_A          229 DLSQRSMQTEQFEV  242 (321)
T ss_dssp             TCCHHHHTTCCCEE
T ss_pred             ccCHhHHhcCCeEE
Confidence            98888887766543

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.79  E-value=4.7e-20  Score=178.97  Aligned_cols=145  Identities=43%  Similarity=0.649  Sum_probs=62.7

Q ss_pred             ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcC
Q psy9066          20 RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNF   99 (275)
Q Consensus        20 ~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~   99 (275)
                      ...|.++++|+|  |+++|||||||| |++|.|..||++++++++.|+++++++++++++.|...++++++++  .++++
T Consensus       370 ~~~F~s~~~a~y--~~~vT~TTvGYG-Di~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~~~--~~~l~  444 (514)
T 2r9r_B          370 DSQFPSIPDAFW--WAVVSMTTVGYG-DMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGE--EQAQY  444 (514)
T ss_dssp             TCSCSSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC----------
T ss_pred             Cccccchhhhhh--eeeeEEEecccC-CCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhh
Confidence            345689999999  999999999999 9999999999999999999999999999999999999888665433  36679


Q ss_pred             CCEEeCCCCCCCCCcccccCCCCchhhhHhhhcccccCCCCchhhhcccccccccCCCCCCCcccccccCCCCCCCcchh
Q psy9066         100 NHVTSCPYLPGTLGEWLVDNSSSRSRKVAAATGLVHNDVGSSWEDMQSQNFNHVTSCPYLPGTLGQHMKKSSLSESSSDM  179 (275)
Q Consensus       100 nHvIiCGy~~g~lge~I~~~~~s~~~~ea~a~~Lv~~di~~~~e~~q~~~f~~~s~~p~l~~~~~~~~~~s~~~~~~~~~  179 (275)
                      +|+++|||++.                                                   +..+..++++.+.+++|.
T Consensus       445 ~h~iicg~~~~---------------------------------------------------~~~l~~~~~~~~~~~s~~  473 (514)
T 2r9r_B          445 LQVTSSPKIPS---------------------------------------------------SPDLKKSRSASTISKSDY  473 (514)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEeCCCcc---------------------------------------------------chhHHhcccCCCcccccc
Confidence            99999999532                                                   112234567778899999


Q ss_pred             hhhhhccccCCCcccchhhhhhcccCCCCCCCCCCCcccccchh
Q psy9066         180 MELEEGLLFGRDYSTSLTNKKLLSNNNLSLCNPKHNIMSIETDW  223 (275)
Q Consensus       180 ~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (275)
                      +|+||+.-.+.+....  .....+|....+|++ .+..+++|||
T Consensus       474 ~el~e~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~  514 (514)
T 2r9r_B          474 MEIQEGVNNSNEDFRE--ENLKTANSTLANTNY-VNITKMLTDV  514 (514)
T ss_dssp             --------------------------------------------
T ss_pred             cccccccccccccccc--cccccCCccccccCc-cccccccccC
Confidence            9999987654442211  111111222222221 2568899996

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=99.70  E-value=2.1e-18  Score=162.06  Aligned_cols=157  Identities=15%  Similarity=0.022  Sum_probs=118.7

Q ss_pred             cchHHHHHHHhhhhceeeceeecCcceec--CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066          23 QDLVVEAMWQMWGTNTRTELLFGIHIRPV--GVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN  100 (275)
Q Consensus        23 f~Si~DAfW~ywavVTmTTVGYG~DI~P~--T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n  100 (275)
                      +.++++|||  |+++|+|||||| |++|.  ++.|++++.+.++.|++++|+++|++++.+++..+|.   +.  -...+
T Consensus        89 ~~sf~~af~--fSv~T~TTvGYG-d~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ra---~t--i~FS~  160 (340)
T 3sya_A           89 LNGFVSAFL--FSIETETTIGYG-YRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKRA---ET--LVFST  160 (340)
T ss_dssp             CCSTTHHHH--HHHHHHSCCCCS-SSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGG---GG--EEECS
T ss_pred             ccCHHHHHh--hhheeeeeecCC-CccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcC---ce--EEecc
Confidence            578999999  999999999999 99997  7889999999999999999999999998877532221   11  23578


Q ss_pred             CEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccc-----cccccCCC-C--CCCcc-cccccCC
Q psy9066         101 HVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQN-----FNHVTSCP-Y--LPGTL-GQHMKKS  170 (275)
Q Consensus       101 HvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~-----f~~~s~~p-~--l~~~~-~~~~~~s  170 (275)
                      |.++|+.+...+-+....+.+.+...++ ....|.+.....|+|-+....     ..|.+..| .  +||++ |.|+++|
T Consensus       161 ~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~~~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~Ide~S  240 (340)
T 3sya_A          161 HAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFIPLNQTDINVGYYTGDDRLFLVSPLIISHEINQQS  240 (340)
T ss_dssp             CEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEECCEECTTSCEETTCEEEECSSTTTTTTSCCCSSCEEEEEECCTTS
T ss_pred             eEEEeccCCeEEEEEEEecCCCCeEEEEEEEEEEEEEEecCCCceEeeEEeeeceeccCCCCcceeeccEEEEEECCCCC
Confidence            9999999866666666666555555666 455677777777777653211     12333334 4  57888 9999999


Q ss_pred             CCCCCcchhhhhhhccc
Q psy9066         171 SLSESSSDMMELEEGLL  187 (275)
Q Consensus       171 ~~~~~~~~~~e~~e~~~  187 (275)
                      |+.+-+.|.|+.++.|+
T Consensus       241 PL~~~t~~~L~~~~~Ei  257 (340)
T 3sya_A          241 PFWEISKAQLPKEELEI  257 (340)
T ss_dssp             TTTTCCTTTGGGCCCEE
T ss_pred             CccccChhHHhhCCeEE
Confidence            99998888888777654

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=99.67  E-value=4.5e-18  Score=159.98  Aligned_cols=157  Identities=13%  Similarity=0.031  Sum_probs=118.7

Q ss_pred             cchHHHHHHHhhhhceeeceeecCcceec--CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q psy9066          23 QDLVVEAMWQMWGTNTRTELLFGIHIRPV--GVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQNFN  100 (275)
Q Consensus        23 f~Si~DAfW~ywavVTmTTVGYG~DI~P~--T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~l~n  100 (275)
                      +.++++|||  |+++|+|||||| |++|.  ++.|++++.+.++.|++++|+++|++++.|++..+   +.+.  -...+
T Consensus        92 ~~sf~~af~--fSv~T~TTvGYG-d~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~---r~~t--i~FS~  163 (343)
T 3spc_A           92 VNGFVAAFL--FSIETQTTIGYG-FRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKK---RAQT--LLFSH  163 (343)
T ss_dssp             CCSHHHHHH--HHHHHHSCCCCS-SSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSC---CCCC--EEECS
T ss_pred             cCCHHHHhh--eeeeeeEeecCC-CccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh---hcCc--EEecc
Confidence            579999999  999999999999 99974  89999999999999999999999999988764211   1111  22468


Q ss_pred             CEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccc-----cccccCC-CC--CCCcc-cccccCC
Q psy9066         101 HVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQN-----FNHVTSC-PY--LPGTL-GQHMKKS  170 (275)
Q Consensus       101 HvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~-----f~~~s~~-p~--l~~~~-~~~~~~s  170 (275)
                      |.++|+.+...+-++...+-+++...|+ ....|.++....|+|-+....     .+|.+.. +.  +||++ |.|+++|
T Consensus       164 ~AVI~~~dG~~~LmfRv~n~R~~~liea~vr~~l~r~~~t~eGe~~~l~~~~l~~~~d~~~~~~fl~~p~tv~H~IDe~S  243 (343)
T 3spc_A          164 NAVVAMRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDIDVGFDKGLDRIFLVSPITILHEINEDS  243 (343)
T ss_dssp             CEEEEEETTEEEEEEEEEESSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEEECSSGGGTTTBCCCSSCEEEEEECCTTS
T ss_pred             ceEEecCCCcEEEEEEEecCCCCeEEEEEEEEEEEEEEEcCCCcEEeeEEEEeeecccCCCCcceeeccEEEEEeCCCCC
Confidence            8999999755566655555555555666 555677777888887764322     1223333 44  57888 9999999


Q ss_pred             CCCCCcchhhhhhhccc
Q psy9066         171 SLSESSSDMMELEEGLL  187 (275)
Q Consensus       171 ~~~~~~~~~~e~~e~~~  187 (275)
                      |+.+-+.|.|+.++.|+
T Consensus       244 PL~~~t~~~L~~~~~Ei  260 (343)
T 3spc_A          244 PLFGISRQDLETDDFEI  260 (343)
T ss_dssp             TTTTCCHHHHTTCCCEE
T ss_pred             CcccCCHHHHhhCCeEE
Confidence            99999999888877665

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.56  E-value=4.7e-16  Score=127.52  Aligned_cols=61  Identities=26%  Similarity=0.482  Sum_probs=56.1

Q ss_pred             ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066          20 RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY   83 (275)
Q Consensus        20 ~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~   83 (275)
                      +.++++++||+|  |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.+..
T Consensus        38 e~~~~~~~~a~y--~~~~T~tTvGyG-Di~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~   98 (137)
T 4h33_A           38 EPEINNYPDALW--WAIVTATTVGYG-DIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC   98 (137)
T ss_dssp             CSSCCSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HcCCCCHHHHHH--HHHHHHHcccCC-CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445689999999  999999999999 9999999999999999999999999999998876643

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.53  E-value=1.9e-15  Score=127.13  Aligned_cols=62  Identities=24%  Similarity=0.503  Sum_probs=57.4

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY   85 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y   85 (275)
                      ..+.+++||+|  |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.+.+..
T Consensus        80 ~~~~s~~~a~y--~s~vTltTVGYG-Di~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~  141 (155)
T 2a9h_A           80 AALISYPDALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGRE  141 (155)
T ss_dssp             SSTTSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CccCcccceeh--eeeeeeecccCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34679999999  999999999999 999999999999999999999999999999998887543

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.52  E-value=7.8e-15  Score=117.97  Aligned_cols=62  Identities=24%  Similarity=0.535  Sum_probs=57.4

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY   85 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y   85 (275)
                      ..+.++.||+|  |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.+.+..
T Consensus        57 ~~~~~~~~a~y--~~~~T~tTvGyG-Di~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~  118 (122)
T 2ih3_C           57 AQLITYPRALW--WACETATTVAYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRE  118 (122)
T ss_dssp             CCCCSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCccccchh--heeeeeeeeecC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45589999999  999999999999 999999999999999999999999999999998887643

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.52  E-value=2.2e-15  Score=144.21  Aligned_cols=90  Identities=19%  Similarity=0.296  Sum_probs=71.6

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHH-HHHHHHHHH----HHhhhhHHHhhhc
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPV-IVSNFNYFY----HRETDQEDMQSQN   98 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgv-I~s~f~~~y----~r~kr~ek~~~~l   98 (275)
                      .+++||||  |+++|+|||||| |++|.|..||+++++++++|+++++++++. +++.+...+    .+.+++++....+
T Consensus        50 ~~~~~~~y--~~~~t~tTvGyg-d~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (565)
T 4gx0_A           50 YSFMAGIY--WTITVMTTLGFG-DITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT  126 (565)
T ss_dssp             CCHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC
T ss_pred             Cchhhhhh--eeeeeeeeecCC-CcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            58999999  999999999999 999999999999999999999999999987 444443322    2223333334667


Q ss_pred             CCCEEeCCCCCCCCCccccc
Q psy9066          99 FNHVTSCPYLPGTLGEWLVD  118 (275)
Q Consensus        99 ~nHvIiCGy~~g~lge~I~~  118 (275)
                      ++|+++||+  |+.|+.+.+
T Consensus       127 ~~hviI~G~--g~~g~~la~  144 (565)
T 4gx0_A          127 RGHILIFGI--DPITRTLIR  144 (565)
T ss_dssp             CSCEEEESC--CHHHHHHHH
T ss_pred             CCeEEEECC--ChHHHHHHH
Confidence            999999999  666666654

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.50  E-value=2.5e-15  Score=117.33  Aligned_cols=61  Identities=25%  Similarity=0.366  Sum_probs=56.0

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY   85 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y   85 (275)
                      .+.++.||+|  |+++|+|||||| |++|.|..||++++++++.|+++++++++.+.+.+.+..
T Consensus        37 ~~~~~~~a~y--~~~~T~tTvGyG-Di~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~   97 (103)
T 2k1e_A           37 ALISYPDAIW--WSVETATTVGYG-DRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRRE   97 (103)
T ss_dssp             CCCCGGGTTT--TTTGGGGCCSCC-SSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHH
T ss_pred             ccccHHHHHH--HHHHHHhcccCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4468999999  999999999999 999999999999999999999999999999988776543

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.49  E-value=1.2e-14  Score=118.04  Aligned_cols=64  Identities=23%  Similarity=0.512  Sum_probs=58.3

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHR   87 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r   87 (275)
                      ..+.+++||+|  |+++|+|||||| |++|.|..||+++++++++|+++++++++.+.+.+.+..++
T Consensus        36 ~~~~~~~~a~y--f~~~T~tTvGyG-d~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~   99 (139)
T 3eff_K           36 AQLITYPRALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE   99 (139)
T ss_dssp             CCCCCHHHHHH--HHHHHHTTCCCS-SSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred             cccCCHHHHHH--HHheeeecccCC-CCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34588999999  999999999999 99999999999999999999999999999999877665544

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.46  E-value=4.6e-16  Score=139.58  Aligned_cols=88  Identities=15%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh-hhhHHHhhhcCCCE
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE-TDQEDMQSQNFNHV  102 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~-kr~ek~~~~l~nHv  102 (275)
                      .+++||+|  |+++|+|||||| |++|.|..||++++++++.|+++++++++.+++.+.....++ .+.+++. + ++|+
T Consensus        44 ~~~~~a~y--~~~~t~tTvGyG-d~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v  118 (336)
T 1lnq_A           44 ESWTVSLY--WTFVTIATVGYG-DYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVA-K-SRHV  118 (336)
T ss_dssp             CCSSTTHH--HHHHHHTTCCCS-SCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEE
T ss_pred             CCHHHHHH--HHHHHhhcccCC-CCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-c-cCCE
Confidence            68899999  999999999999 999999999999999999999999999999988776644332 2222222 2 6899


Q ss_pred             EeCCCCCCCCCccccc
Q psy9066         103 TSCPYLPGTLGEWLVD  118 (275)
Q Consensus       103 IiCGy~~g~lge~I~~  118 (275)
                      ++||+  |+.|+.+.+
T Consensus       119 iI~G~--G~~g~~l~~  132 (336)
T 1lnq_A          119 VICGW--SESTLECLR  132 (336)
T ss_dssp             EEESC--CHHHHHHHT
T ss_pred             EEECC--cHHHHHHHH
Confidence            99999  677766554

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.40  E-value=1e-13  Score=110.68  Aligned_cols=56  Identities=20%  Similarity=0.230  Sum_probs=53.1

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN   82 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~   82 (275)
                      .++.||+|  |+++|+|||||| |++|.|..||++++++++.|+.++++.++.+.+.+.
T Consensus        48 ~~~~~a~y--~~~~T~tTvGyG-di~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~  103 (114)
T 2q67_A           48 LRPIDALY--FSVVTLTTVGAG-NFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ  103 (114)
T ss_dssp             CCHHHHHH--HHHHHHTSCCCS-SCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHH--HHHHHhcceeCC-CCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999  999999999999 999999999999999999999999999999887763

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.37  E-value=3.6e-13  Score=101.71  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=52.1

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF   81 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f   81 (275)
                      .++.||+|  |+++|+|||||| |++|.|..||++++++++.|+.++++.++.+.+.+
T Consensus        27 ~~~~~a~y--f~~~T~tTvGyG-di~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A           27 ESWTVSLY--WTFVTIATVGYG-DYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             CCHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHH--HHHHHhcccCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999  999999999999 99999999999999999999999999999887654

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.36  E-value=2.8e-13  Score=111.36  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=51.1

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVS   79 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s   79 (275)
                      .++.||+|  |+++|+|||||| |++|.|..||++++++++.|++++++.++.+.+
T Consensus        51 ~~~~~a~y--~~~~t~tTvGyG-d~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~  103 (148)
T 3vou_A           51 LRPLDALY--FSVVTLTTVGDG-NFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV  103 (148)
T ss_dssp             CCHHHHHH--HHHHHHTTCCCS-SCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHH--HHHHHHHccCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999  999999999999 999999999999999999999999999998876

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.35  E-value=4.3e-13  Score=114.35  Aligned_cols=60  Identities=23%  Similarity=0.531  Sum_probs=56.1

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY   83 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~   83 (275)
                      ..+.+++||+|  |+++|||||||| |++|.|+.||++++++++.|+++++++++.+++.+.+
T Consensus       161 ~~~~~~~~s~y--~~~~t~tTvGyG-di~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~  220 (223)
T 1orq_C          161 SSIKSVFDALW--WAVVTATTVGYG-DVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK  220 (223)
T ss_dssp             CSCCSHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCcchhHHH--hHHhHHhccCCC-CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34579999999  999999999999 9999999999999999999999999999999987764

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.34  E-value=5.7e-13  Score=103.63  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=52.9

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN   82 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~   82 (275)
                      .++.||+|  |+++|+|||||| |++|.|..||++++++++.|+.++++.++.+.+.+.
T Consensus        31 ~~~~~a~y--f~~~T~tTvGyG-di~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~   86 (97)
T 3ouf_A           31 LRPIDALY--FSVVTLTTVGYG-DFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ   86 (97)
T ss_dssp             CCHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             CCHHHHHH--HHHHHHHccCCC-CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            68999999  999999999999 999999999999999999999999999998887654

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.34  E-value=7.7e-13  Score=119.49  Aligned_cols=64  Identities=19%  Similarity=0.375  Sum_probs=59.0

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE   88 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~   88 (275)
                      .|.++++|+|  |+++|||||||| |++|.|..||++++++++.|+++++++++.+++.+.+..+++
T Consensus       158 ~f~~~~~s~y--~~~~t~ttvGyg-d~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~  221 (355)
T 3beh_A          158 KFGSIPQAMW--WAVVTLSTTGYG-DTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRG  221 (355)
T ss_dssp             HHSSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHH--HHHhheeecCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3578999999  999999999999 999999999999999999999999999999999888765544

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.32  E-value=3.5e-14  Score=119.16  Aligned_cols=59  Identities=25%  Similarity=0.586  Sum_probs=54.7

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY   83 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~   83 (275)
                      .+.+++||+|  |+++|+|||||| |++|.|..||+++++++++|+++++++++.+++.+..
T Consensus        64 ~~~~~~~a~y--f~~~T~tTvGyG-Di~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~  122 (166)
T 3pjs_K           64 QLITYPRALW--WSVETATTVGYG-DLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG  122 (166)
T ss_dssp             CCCSTTTTTT--TTHHHHSCCCCS-SSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred             ccCCHHHHHH--HHHHHhccccCC-CCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3478999999  999999999999 9999999999999999999999999999998876653

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.22  E-value=9.5e-12  Score=115.56  Aligned_cols=64  Identities=9%  Similarity=0.127  Sum_probs=58.8

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE   88 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y~r~   88 (275)
                      .-++++||+|  |+++|+|||||| |++|.|..||+++++++++||.+++++++.+.+.+...+++.
T Consensus       112 ~~w~~~~a~y--f~~~t~tTvGYG-di~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~  175 (309)
T 3um7_A          112 SAWDLGSAFF--FSGTIITTIGYG-NVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHG  175 (309)
T ss_dssp             -CCSHHHHHH--HHHHHHTSCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhhhH--hhheeeeecccC-CCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            3478999999  999999999999 999999999999999999999999999999999888776553

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.09  E-value=1.8e-11  Score=113.71  Aligned_cols=73  Identities=15%  Similarity=0.004  Sum_probs=53.9

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHhhh
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKI------VGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQEDMQSQ   97 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI------~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~ek~~~~   97 (275)
                      .++.||+|  |+++|+|||||| |++|.|..||.      ++++++++|+++++++++.+.+.+....+| ++ + ...+
T Consensus       223 ~~~~da~y--~~~vTltTvGyG-d~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r-~~-~-~~~~  296 (309)
T 3um7_A          223 WSKLEAIY--FVIVTLTTVGFG-DYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRR-TR-A-EMGG  296 (309)
T ss_dssp             CCHHHHHH--HHHHHHTTCCCS-SCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT-C--------
T ss_pred             CCHHHHHH--HHHhheeccccC-CCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H-HHhH
Confidence            78999999  999999999999 99999999984      999999999999999999877755543322 22 2 2345


Q ss_pred             cCCCE
Q psy9066          98 NFNHV  102 (275)
Q Consensus        98 l~nHv  102 (275)
                      +++|.
T Consensus       297 l~~h~  301 (309)
T 3um7_A          297 LTAQS  301 (309)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            67774

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.07  E-value=6.7e-11  Score=108.69  Aligned_cols=63  Identities=14%  Similarity=0.179  Sum_probs=55.9

Q ss_pred             ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy9066          20 RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY   85 (275)
Q Consensus        20 ~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~~y   85 (275)
                      ...-++++||+|  |+++|+|||||| |++|.|..||+++++.+++||.++++.++.+...+....
T Consensus        88 ~~~~w~~~~a~y--f~~~t~tTvGyG-d~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~  150 (280)
T 3ukm_A           88 GNWNWDFTSALF--FASTVLSTTGYG-HTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHV  150 (280)
T ss_dssp             --CCSSHHHHHH--HHHHHHTTCCCC-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChhcchh--heeeeeeccccC-CcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345579999999  999999999999 999999999999999999999999999998887666543

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.03  E-value=4.4e-11  Score=109.84  Aligned_cols=56  Identities=11%  Similarity=0.116  Sum_probs=51.6

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcc-------hhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVW-------GKIVGSLCAIAGVLTIALPVPVIVSNFN   82 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~-------GRI~til~il~GI~ifAl~vgvI~s~f~   82 (275)
                      .+++||+|  |+++|+|||||| |++|.|..       ||+++++++++|+++++++++.+.+...
T Consensus       200 ~s~~da~y--~~~iTltTvGyG-D~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~  262 (280)
T 3ukm_A          200 WNFLESFY--FCFISLSTIGLG-DYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE  262 (280)
T ss_dssp             CCHHHHHH--HHHHHHTTCCCC-SCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred             Cchhhhhh--heeeeeecccCC-CCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999  999999999999 99999996       5999999999999999999998877544

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=98.62  E-value=9.7e-09  Score=90.63  Aligned_cols=69  Identities=13%  Similarity=0.042  Sum_probs=53.1

Q ss_pred             cccchHHHHHHHhhhhceeeceeec-CcceecCcch----hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhh
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFG-IHIRPVGVWG----KIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETDQ   91 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG-~DI~P~T~~G----RI~til~il~GI~ifAl~vgvI~s~f~~~y~r~kr~   91 (275)
                      ..|.++++|+|  |.++|+||+||| ..++|.+..|    +.+++++++.|+++++++++++.++|.+..++++++
T Consensus       176 ~~F~s~~~a~~--~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~~  249 (285)
T 3rvy_A          176 EWFGTLGESFY--TLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQH  249 (285)
T ss_dssp             HHHSSHHHHHH--HHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             cccCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34899999999  999999999999 5556988865    888999999999999999999999998766654433

>3agw_A KIR3.2, G protein-activated inward rectifier potassium CH; cytoplasmic assembly, ION channel, beta-barrel, transport PR; 2.20A {Mus musculus} PDB: 3at8_A 3at9_A 3ata_A 3atb_A 3atd_A 3ate_A 3atf_A 2e4f_A 3auw_B 3auw_A

Probab=96.06  E-value=0.00095  Score=58.93  Aligned_cols=88  Identities=14%  Similarity=-0.023  Sum_probs=63.1

Q ss_pred             cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhccccc-ccc-------cCCCC--CCCcc-cc
Q psy9066          98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNF-NHV-------TSCPY--LPGTL-GQ  165 (275)
Q Consensus        98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f-~~~-------s~~p~--l~~~~-~~  165 (275)
                      ..++.+||+++...+-++...+-+.+...++ ....|.......|+|-+  +++ +++       +..|.  +||++ |.
T Consensus        34 FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~~~~~t~EGe~~--~~~~~dL~l~~d~~~~~~fl~~p~tv~H~  111 (208)
T 3agw_A           34 FSTHAVISMRDGKLCLMFRVGDLRNSHIVEASIRAKLIKSKQTSEGEFI--PLNQTDINVGYYTGDDRLFLVSPLIISHE  111 (208)
T ss_dssp             BCSCEEEEEETTEEEEEEEECCCTTCCEEEEEEEEEEECCEECTTCCEE--TTCEEECCSSTTTTTTBCCCSSCEEEEEE
T ss_pred             ecceEEEEecCCeEEEEEEEecCccCeEEeeEEEEEEEEEEECCCCcEE--EEEEEeeecccCCCCCceEEeccEEEEEE
Confidence            4677999999866677766666666566666 55567777777766644  333 333       34566  57888 99


Q ss_pred             cccCCCCCCCcchhhhhhhccc
Q psy9066         166 HMKKSSLSESSSDMMELEEGLL  187 (275)
Q Consensus       166 ~~~~s~~~~~~~~~~e~~e~~~  187 (275)
                      |+++||+.+-+.|.|+.++.|+
T Consensus       112 IDe~SPL~~~t~~~L~~~~~Ei  133 (208)
T 3agw_A          112 INQQSPFWEISKAQLPKEELEI  133 (208)
T ss_dssp             CCTTSTTTTCCTTTGGGCCCEE
T ss_pred             CCCCCCccccCHhHHhcCCeEE
Confidence            9999999998888888777554

>1n9p_A GIRK1, G protein-activated inward rectifier potassium CH; beta barrel, cytoplasmic domain, inward rectifier potassium channel, metal transport; 1.80A {Mus musculus} SCOP: b.1.18.16 PDB: 3k6n_A 1u4e_A

Probab=95.96  E-value=0.00064  Score=59.99  Aligned_cols=89  Identities=15%  Similarity=-0.028  Sum_probs=65.3

Q ss_pred             cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-ccc
Q psy9066          98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQH  166 (275)
Q Consensus        98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~  166 (275)
                      ..++.+||+++...+-++...+-+.+...++ ....|.......|+|-+. ..+.++       +..|.  +||++ |.|
T Consensus        32 FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~-~~~~~L~l~~d~~~~~~~l~~p~tv~H~I  110 (207)
T 1n9p_A           32 FSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLP-LDQLELDVGFSTGADQLFLVSPLTICHVI  110 (207)
T ss_dssp             BCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEE-EEEEECCSSTTTTTTEEECSSCEEEEEEC
T ss_pred             EeCcEEEEEECCEEEEEEEEecCCCCeEEccEEEEEEEEEEEcCCCcEEE-EEEEeeEeeccCCCCceEEEccEEEEEeC
Confidence            4678999999876677777766666666676 555688888888887764 222233       55676  67888 999


Q ss_pred             ccCCCCCCCcchhhhhhhccc
Q psy9066         167 MKKSSLSESSSDMMELEEGLL  187 (275)
Q Consensus       167 ~~~s~~~~~~~~~~e~~e~~~  187 (275)
                      +++||+.+-+.|.|+.++.|+
T Consensus       111 De~SPL~~~t~~~L~~~~~Ei  131 (207)
T 1n9p_A          111 DAKSPFYDLSQRSMQTEQFEV  131 (207)
T ss_dssp             CTTSTTTTCCTTGGGTCCCEE
T ss_pred             CCCCCccccCHhHHhcCCeEE
Confidence            999999998888887776543

>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}

Probab=95.63  E-value=0.00084  Score=59.21  Aligned_cols=89  Identities=13%  Similarity=0.024  Sum_probs=64.2

Q ss_pred             cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-ccc
Q psy9066          98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQH  166 (275)
Q Consensus        98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~  166 (275)
                      ..++.+||+++...+-++...+-+.....++ ....|.......|+|-+. .++.++       +..|.  +||++ |.|
T Consensus        32 FS~~AVI~~~dG~~~LmfRv~n~R~~~iiea~vr~~L~r~~~t~EGe~~~-~~~~~L~l~~d~~~~~~fl~~p~tv~H~I  110 (208)
T 2gix_A           32 FSHNAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITSEGEYIP-LDQIDINVGFDSGIDRIFLVSPITIVHEI  110 (208)
T ss_dssp             ECSCEEEEEETTEEEEEEEEEECCSSCEEEEEEEEEEEEEEECTTCCEEE-EEEEEECSSGGGTTTEECCSSCEEEEEEC
T ss_pred             ecCeEEEEEeCCEEEEEEEEecCccCeEEeeEEEEEEEEEEeCCCCcEEE-EEEEEEEeccCCCCCceEEeccEEEEEEC
Confidence            4568899999866666666666555556666 556677777888777654 344443       34455  67888 999


Q ss_pred             ccCCCCCCCcchhhhhhhccc
Q psy9066         167 MKKSSLSESSSDMMELEEGLL  187 (275)
Q Consensus       167 ~~~s~~~~~~~~~~e~~e~~~  187 (275)
                      ++.||+.+-+.|.|+.++.|+
T Consensus       111 De~SPL~~~t~~~L~~~~~Ei  131 (208)
T 2gix_A          111 DEDSPLYDLSKQDIDNADFEI  131 (208)
T ss_dssp             CTTSTTTTCCHHHHHTCCCEE
T ss_pred             CCCCCccccChhHHhcCCEEE
Confidence            999999999988888776554

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=95.28  E-value=0.0065  Score=51.68  Aligned_cols=60  Identities=8%  Similarity=-0.054  Sum_probs=46.5

Q ss_pred             cccchHHHHHHHhhhhceeeceeecCccee----cCcchhHHHHHH-HHHHHHHHHhhHHHHHHHHHH
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLFGIHIRP----VGVWGKIVGSLC-AIAGVLTIALPVPVIVSNFNY   83 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGYG~DI~P----~T~~GRI~til~-il~GI~ifAl~vgvI~s~f~~   83 (275)
                      ..|.++++|+|  +...++||.||+ |+..    .++++.++-+.+ .+.+..++.++++++.++|.+
T Consensus       161 ~~F~~~~~a~~--~lf~~~t~~~w~-~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~  225 (229)
T 4dxw_A          161 SRWGDLGISLI--TLFQVLTLSSWE-TVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQ  225 (229)
T ss_dssp             TTTSSHHHHHH--HHHHHHTTSSTH-HHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHH--HHHHHHccCCHH-HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999  999999999999 9732    344566654444 445678889999999988874

>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus}

Probab=94.30  E-value=0.004  Score=57.27  Aligned_cols=89  Identities=13%  Similarity=0.022  Sum_probs=64.0

Q ss_pred             cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-ccc
Q psy9066          98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQH  166 (275)
Q Consensus        98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~  166 (275)
                      ..++.+||+++...+-++...+-+.....++ ....|....+..++|-+. .++.++       +..|.  +||++ |.|
T Consensus        37 FS~~AVI~~rdG~~~LMfRVaN~R~s~Iiea~Vrl~Lir~~~T~EGe~~~-~~~~dL~l~~d~~~~~~fL~~P~tV~H~I  115 (270)
T 1u4f_A           37 FSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIP-LDQIDINVGFDSGIDRIFLVSPITIVHEI  115 (270)
T ss_dssp             ECSSEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECTTCCEEE-EEEEECCSSTTTTTTEECCSSCEEEEEEC
T ss_pred             ecCcEEEEEeCCEEEEEEEEecCCCCeEEeeEEEEEEEEEEEcCCCcEEE-eEEEEEEeccCCCCCceEEeccEEEEEEC
Confidence            4567899999866666766666556566666 556677777888777654 234433       34455  67888 999


Q ss_pred             ccCCCCCCCcchhhhhhhccc
Q psy9066         167 MKKSSLSESSSDMMELEEGLL  187 (275)
Q Consensus       167 ~~~s~~~~~~~~~~e~~e~~~  187 (275)
                      ++.||+.+-+.+.|+.++.++
T Consensus       116 De~SPLy~~t~e~L~~~d~EI  136 (270)
T 1u4f_A          116 DEDSPLYDLSKQDIDNADFEI  136 (270)
T ss_dssp             CTTSTTTTCCHHHHHHCCCEE
T ss_pred             CCCCCccccChhhHhcCCeEE
Confidence            999999999988888776554

>2xky_I Inward rectifier potassium channel 2; ION channel, metal transport, membrane protein; 17.20A {Mus musculus}

Probab=93.77  E-value=0.011  Score=55.26  Aligned_cols=89  Identities=13%  Similarity=0.022  Sum_probs=63.7

Q ss_pred             cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc-------cCCCC--CCCcc-ccc
Q psy9066          98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV-------TSCPY--LPGTL-GQH  166 (275)
Q Consensus        98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~-------s~~p~--l~~~~-~~~  166 (275)
                      ..++.+||+++...+-++...+-+.....++ ....|....+..++|-+. ++++++       ...|.  +||++ |.|
T Consensus        76 FS~~AVI~~rDG~~cLMFRVaN~R~s~Iiea~Vr~~Lir~~~T~EGe~i~-~~~~dL~l~~d~~~~~~fL~~P~tV~H~I  154 (309)
T 2xky_I           76 FSHNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITSEGEYIP-LDQIDINVGFDSGIDRIFLVSPITIVHEI  154 (309)
T ss_pred             EeccEEEEEECCEEEEEEEEecCcCCeEEccEEEEEEEEEEEcCCCcEEE-eeeeeeecccCCCCcceeEeccEEEEEEC
Confidence            4567999999876777777666666666777 555677777788766553 234433       13355  67888 999


Q ss_pred             ccCCCCCCCcchhhhhhhccc
Q psy9066         167 MKKSSLSESSSDMMELEEGLL  187 (275)
Q Consensus       167 ~~~s~~~~~~~~~~e~~e~~~  187 (275)
                      +++||+.+-+.+.|+.++.++
T Consensus       155 De~SPLy~~t~e~L~~~dfEI  175 (309)
T 2xky_I          155 DEDSPLYDLSKQDIDNADFEI  175 (309)
T ss_pred             CCCCCccccChhhHhcCCeEE
Confidence            999999998888887776544

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=93.57  E-value=0.079  Score=51.67  Aligned_cols=56  Identities=14%  Similarity=0.245  Sum_probs=45.4

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY   83 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~   83 (275)
                      .++.+++|  +++.+++..| + +..|.+..+|++.++|+++++++.+..++.+++.++.
T Consensus       562 ~~~~~~~~--~~~~~l~~~g-~-~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~  617 (823)
T 3kg2_A          562 FGIFNSLW--FSLGAFMQQG-A-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV  617 (823)
T ss_dssp             HHHHHHHH--HTTTTSCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHH--HHHHHHHhcC-C-CcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            35789999  9999999888 6 8999999999999999999999999999999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	0.002

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 28 EAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNF 81
           A+W  W   T T + +G    PV +WG+ V  +  +AG+ +  L    + + F
Sbjct: 43 RALW--WSVETATTVGYGDLY-PVTLWGRCVAVVVMVAGITSFGLVTAALATWF 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.63
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.42
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.41
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.18
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	97.96
d1p7ba1	158	Inward rectifier potassium channel Kirbac1.1 {Burk	97.31
d1xl4a1	161	Inward rectifier potassium channel kirbac3.1 {Magn	96.81
d1n9pa_	202	G protein-gated inward rectifier Girk1 {Mouse (Mus	95.96

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.63  E-value=1.1e-16  Score=123.50  Aligned_cols=59  Identities=25%  Similarity=0.564  Sum_probs=55.4

Q ss_pred             ccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9066          22 TQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNY   83 (275)
Q Consensus        22 ~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~~   83 (275)
                      .+.+++||+|  |+++|+|||||| |++|.|..||++++++++.|+++++++++.+.+.+..
T Consensus        37 ~~~s~~~aly--~~~vT~tTvGYG-Di~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~   95 (103)
T d1r3jc_          37 QLITYPRALW--WSVETATTVGYG-DLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG   95 (103)
T ss_dssp             CCCSHHHHHH--HHHHHHTTCCCS-SSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchhhhhh--hheeeecccccC-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999  999999999999 9999999999999999999999999999999887764

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.42  E-value=2.7e-14  Score=111.44  Aligned_cols=60  Identities=20%  Similarity=0.390  Sum_probs=55.6

Q ss_pred             ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066          20 RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN   82 (275)
Q Consensus        20 ~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~   82 (275)
                      +....++.||+|  |+++|+|||||| |++|.+..||+++++.++.|++++|++++.+.+.|+
T Consensus        56 ~~~~~~~~~a~y--fs~~T~tTvGYG-Di~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~s  115 (116)
T d1p7ba2          56 NQSPPGFVGAFF--FSVETLATVGYG-DMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA  115 (116)
T ss_dssp             CSSSSSTHHHHH--HHTTTTTTCCCS-CCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHH--HHHHHHHhcccc-ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344578999999  999999999999 999999999999999999999999999999998764

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.41  E-value=2.9e-14  Score=111.09  Aligned_cols=60  Identities=20%  Similarity=0.439  Sum_probs=55.9

Q ss_pred             ccccchHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9066          20 RLTQDLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFN   82 (275)
Q Consensus        20 ~~~f~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~s~f~   82 (275)
                      .....++.||+|  |+++|||||||| |++|.|..||+++++.++.|++++++.++.+.+.|+
T Consensus        55 ~~~~~~~~~a~y--fs~~T~tTvGYG-Di~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fs  114 (116)
T d1xl4a2          55 NARPGSFTDAFF--FSVQTMATIGYG-KLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT  114 (116)
T ss_dssp             TSCTTCHHHHHH--HHHHHHTTCCCS-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHH--HHHHHHccCCCC-ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445578999999  999999999999 999999999999999999999999999999998775

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.18  E-value=2.7e-13  Score=100.31  Aligned_cols=52  Identities=17%  Similarity=0.287  Sum_probs=49.2

Q ss_pred             chHHHHHHHhhhhceeeceeecCcceecCcchhHHHHHHHHHHHHHHHhhHHHHH
Q psy9066          24 DLVVEAMWQMWGTNTRTELLFGIHIRPVGVWGKIVGSLCAIAGVLTIALPVPVIV   78 (275)
Q Consensus        24 ~Si~DAfW~ywavVTmTTVGYG~DI~P~T~~GRI~til~il~GI~ifAl~vgvI~   78 (275)
                      .++.||+|  |+++|+||+||| |++|.|..||++++++++.|+.++++.++.+.
T Consensus        26 ~s~~daly--f~~~T~tTiGyG-D~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~   77 (80)
T d1lnqa2          26 ESWTVSLY--WTFVTIATVGYG-DYSPSTPLGMYFTVTLIVLGIGTFAVAVERLL   77 (80)
T ss_dssp             CCSSTTHH--HHHHHHTTCCCS-SCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHT
T ss_pred             CCHHHHHH--HHhhheeeccCC-CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999  999999999999 99999999999999999999999999888765

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.96  E-value=5.8e-07  Score=63.76  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=20.6

Q ss_pred             cccchHHHHHHHhhhhceeeceee
Q psy9066          21 LTQDLVVEAMWQMWGTNTRTELLF   44 (275)
Q Consensus        21 ~~f~Si~DAfW~ywavVTmTTVGY   44 (275)
                      ..|.|++||+|  |+++|||||||
T Consensus        36 ~~f~sip~a~W--WaivT~TTVGY   57 (57)
T d2h8pc1          36 AQLITYPRALW--WACETATTVGY   57 (57)
T ss_dssp             CCCCSHHHHHH--HHHHHHTTCCC
T ss_pred             ccccccchhhh--hheeeeecccC
Confidence            45899999999  99999999998

>d1p7ba1 b.1.18.16 (A:152-309) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=97.31  E-value=2.8e-05  Score=63.41  Aligned_cols=88  Identities=15%  Similarity=0.091  Sum_probs=61.0

Q ss_pred             cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc----cCCCC--CCCcc-cccccC
Q psy9066          98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV----TSCPY--LPGTL-GQHMKK  169 (275)
Q Consensus        98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~----s~~p~--l~~~~-~~~~~~  169 (275)
                      ..++.++|++++..+-++...+.+.+...++ ....|..+....  ||.+.+||+++    ..+|+  +||++ |.|+++
T Consensus         7 FS~~Avi~~~dG~~~LmfRv~n~R~~~lie~~vr~~l~~~~~t~--eG~~~~~~~~l~l~~~~~~~l~~p~tv~H~Id~~   84 (158)
T d1p7ba1           7 FARHAIVRPFNGRMTLMVRAANARQNVIAEARAKMRLMRREHSS--EGYSLMKIHDLKLVRNEHPIFLLGWNMMHVIDES   84 (158)
T ss_dssp             ECSCEEEEECSSSEEEEEEEECCSSCCCCEEEEEEECC------------CCEECCSGGGTTCSCCCCSSEEEEEECSTT
T ss_pred             EeCcEEEEEECCEEEEEEEEecCcCCeEEeeEEEEEEEEeeecC--CCeEEeeeEecccCCCCcceEeeeeEEEEECCCC
Confidence            4567899999877777766666666666666 555566776666  55566888876    67788  77888 999999


Q ss_pred             CCCCCCcchhhhhhhccc
Q psy9066         170 SSLSESSSDMMELEEGLL  187 (275)
Q Consensus       170 s~~~~~~~~~~e~~e~~~  187 (275)
                      ||+.+-+.|-|..++.++
T Consensus        85 SPL~~~~~~~L~~~~~el  102 (158)
T d1p7ba1          85 SPLFGETPESLAEGRAML  102 (158)
T ss_dssp             STTSSCCHHHHHHTTCEE
T ss_pred             CCccCCCHHHHhcCCeEE
Confidence            999999998888888765

>d1xl4a1 b.1.18.16 (A:139-299) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=96.81  E-value=3.4e-05  Score=63.29  Aligned_cols=88  Identities=13%  Similarity=0.086  Sum_probs=66.8

Q ss_pred             cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcccccccc----cCCCC--CCCcc-cccccC
Q psy9066          98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQSQNFNHV----TSCPY--LPGTL-GQHMKK  169 (275)
Q Consensus        98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~~~f~~~----s~~p~--l~~~~-~~~~~~  169 (275)
                      ..+..++|++++..+-+....+.+.+...++ ....|..+....  ||...+||+++    +..|.  +||++ |.|+++
T Consensus         6 FS~~Avi~~~dG~~~LmfRv~n~R~~~liea~vr~~l~~~~~t~--eG~~~~~~~~L~l~~~~~~~~~~~~tv~H~ID~~   83 (161)
T d1xl4a1           6 FSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEISQ--EGMVFRRFHDLTLTRSRSPIFSLSWTVMHPIDHH   83 (161)
T ss_dssp             ECSCEEEEEETTEEEEEEEEEECSSSCEEEEEEEEEEEEEEECT--TSCEEEEEEECCCSCCEEEEECSEEEEEEECCTT
T ss_pred             eeCcEEEEEECCEEEEEEEEecCCCCeEEeeEEEEEEEEEEecC--CCeEEEEEEeeccccCCccEEEEEEEEEEecCCC
Confidence            3567899999877777766666555556666 555677777777  55666788866    56676  77888 999999


Q ss_pred             CCCCCCcchhhhhhhccc
Q psy9066         170 SSLSESSSDMMELEEGLL  187 (275)
Q Consensus       170 s~~~~~~~~~~e~~e~~~  187 (275)
                      ||+.+-+.+.|+.++.|+
T Consensus        84 SPL~~~~~~~l~~~~~El  101 (161)
T d1xl4a1          84 SPIYGETDETLRNSHSEF  101 (161)
T ss_dssp             CTTTTCCHHHHHHHTCEE
T ss_pred             CCCCCCCHHHHhcCCeEE
Confidence            999999999998888764

>d1n9pa_ b.1.18.16 (A:) G protein-gated inward rectifier Girk1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Cytoplasmic domain of inward rectifier potassium channel
domain: G protein-gated inward rectifier Girk1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.00039  Score=59.22  Aligned_cols=91  Identities=16%  Similarity=-0.055  Sum_probs=67.3

Q ss_pred             cCCCEEeCCCCCCCCCcccccCCCCchhhhH-hhhcccccCCCCchhhhcc-cccccc----cCCCC---CCCcc-cccc
Q psy9066          98 NFNHVTSCPYLPGTLGEWLVDNSSSRSRKVA-AATGLVHNDVGSSWEDMQS-QNFNHV----TSCPY---LPGTL-GQHM  167 (275)
Q Consensus        98 l~nHvIiCGy~~g~lge~I~~~~~s~~~~ea-~a~~Lv~~di~~~~e~~q~-~~f~~~----s~~p~---l~~~~-~~~~  167 (275)
                      ..+..++|++++..+-++...+.+.+...++ ....|..+....|+|.+.. ++..++    +..|.   +|||+ |+|+
T Consensus        28 FS~~AVI~~~dG~~~LmfRvan~R~~~liea~vr~~L~~~~~t~EGe~~~~~~~~l~l~~~~~~~~~fl~~p~tv~H~ID  107 (202)
T d1n9pa_          28 FSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTPEGEFLPLDQLELDVGFSTGADQLFLVSPLTICHVID  107 (202)
T ss_dssp             BCSCEEEEEETTEEEEEEEECCCSSSCEEEEEEEEEEEEEEECTTSCEEEEEEEECCSSTTTTTTEEECSSCEEEEEECC
T ss_pred             EcccEEEEEECCEEEEEEEEecCcCCeEEeEEEEEEEEEeeecCCCceEEEEEEEeeccccCCCCccEEcccEEEEEECC
Confidence            4567999999877777777777666667777 5555888888888876643 333333    45554   57888 9999


Q ss_pred             cCCCCCCCcchhhhhhhcccc
Q psy9066         168 KKSSLSESSSDMMELEEGLLF  188 (275)
Q Consensus       168 ~~s~~~~~~~~~~e~~e~~~~  188 (275)
                      +.||+.+-+.|.|+.++.++.
T Consensus       108 e~SPLy~~t~~~L~~~~~Elv  128 (202)
T d1n9pa_         108 AKSPFYDLSQRSMQTEQFEVV  128 (202)
T ss_dssp             TTSTTTTCCTTGGGTCCCEEE
T ss_pred             CCCCCcccchhhhhcCCeEEE
Confidence            999999999988888876653