Psyllid ID: psy9088

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750------
MREFPVSNLEKSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQYLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRRMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTKPKGYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGVAEIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDIEPSGIKNQWVSSSDDESSAEDDKAETPRVQSVEDEGDEVMLVDSVNPRTKVREEVVLSGDSEEEDTVMLTDLTPAEK
cccccccccccccHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHcccccccccccccEEEEEEcccccccccccccccccEEEEccccccccccccccccccHHHHHHHHcccccEEEEEEEcccccccccEEEEEcEEEEEccccccccccccccccccccEEEEccccHHHccccEEccccEEEEEEEEEccccccEEEEEEccccHHHHHHHHcccccHHHHHHcccccccccccccccEEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccEEEEcccEEEEEEccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEccccEEEEccccccccccccccccEEEEEEEEccccEEEEcccHHHHHHcccEEEEEEcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccc
cccccccccHHHHcccccEcccccccccccccccccccccHHHHHHHHHHHHHHHHccccEcccccEEEccccHHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHccEEEEEEEEEcccccccEEEEEEEEEEEcccccccccccccEEEEEcccEEEEEccHHHHHccEEEccccEEEEEEEEcccccccEEEEEEEEEEHHHHHHHHHccccHHHHHHHHHccccccccccccEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccHccccccccEEEccccHHHcccccccccccccHHHHHHHHHHccccccccccHcccEEEEEEEEEEcccccEEEEEEccEEEEEEEEEEEccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccEccccEEEEcccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEcccEEEEEcccccccccccEccccEEEEEEEEEcccEEEEcccHHHHHHcccEEEEEEcccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccHHHHHHHcccccccccccccccccEEEEccccccccccccEEEEcccccHcEEEccccccccc
mrefpvsnlekSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQYLRNdmfltqgtsyWTDLFVRYFLfqtdsnidcddLLFFVRKKYIKtssrnlpkfetEVEVFrkdsrklpigdpdvdweETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHsqkvyaspsrrrmdtkgeveemtypcvcftvdnfNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVSNKFTQRMsfgifsnnsnsriefvkmkgpqgkgfaemavtkpkgygvetptsepgycetdmwdsdwdddpedfyyyrhqrrlsdpsaniNMFAKSiwkgpvnkttakavsedegldSLAHGVAeieagdmrdelddgaynplwtmrgfTQTFHFWKeskraqdwtdvdfmssenwtsisaengeavwcpwvkpsevLAQVSCnmvipkatrpnegllfinaelspmaspqfetgrqtDTSVMINRFLEKcfkeskcidleSLCVVAEEKVWNVRVDlnvlnydgnllGCCSIAALAALAhfrhpdvtstgdqIIIHsaaekdpipmtilhypVTISYAvfnggsegstvpgfteCIQLDTALALSQDRQKLGVDSAYANLVNKTDRIlldegekdsgetkvkvekvgpgiadlisksdiepsgiknqwvsssddessaeddkaetprvqsvedegdevmlvdsvnprtkVREEVVlsgdseeedtvmltdltpaek
mrefpvsnleksfvlsgilqnKVKKIIVnigedesilkSTTTLEQLLEEINFQRAKEKRQYLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYiktssrnlpkfetevevfrkdsrklpigdpdvdWEETVYLNMIIHQFDYTLTLAICTRTSPKhlqvlkrhsqkvyaspsrrrmdtkgeveEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVasdragsvksviflgsirydALKRVYDARTsvsnkftqrmsfgifsnnsnsriEFVKMKGPQGKGFAEMAVTkpkgygvetptsepgycETDMWDSDWDDDPEDFYYYRHQrrlsdpsaNINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGVAEieagdmrdeLDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDsayanlvnktdrilldegekdsgetkvkvekvgpgiadlisksdiepsgikNQWVsssddessaeddkaetprvqsvedegdevmlvdsvnprtkvreevvlsgdseeedtvmltdltpaek
MREFPVSNLEKSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQYLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRRMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTKPKGYGVETPTSEPGYCETdmwdsdwdddpedFYYYRHQRRLSDPSANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGVAEIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDIEPSGIKNQWVsssddessaeddkaeTPRVQSVEDEGDEVMLVDSVNPRTKVREEVVLSGDSEEEDTVMLTDLTPAEK
**********KSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQYLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVL**********************EEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVSNKFTQRMSFGIFSN*****IEFV******************************GYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANINMFAKSIWKGPVN*****************HGVAEIEA***RDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAEL**************DTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSAYANLVNKTDRILL***********************************************************************************************************
********LEKSFVLSGILQNKV***********************LE*****************MFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFV********************************DPDVDWEETVYLNMIIHQFDYTLTLAICTRT***********SQ**********************PCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKR***********************NSNSRIEFVKMKGPQGKGFAEMA******************************************************************************************************PLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELS******************INRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSA******KTDRILLDEGEKDSGETKVKVEKVGP*********************************************************************************D******
********LEKSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQYLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHL***********************EVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTKPKGYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGVAEIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDIEPSGIKN***************************EGDEVMLVDSVNPRTKVREEVVLSGDSEEEDTVMLTDLTPAEK
**********K*FVLS*ILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQYLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRR*****GEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTKPKGYG**T**SEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANINMFAKSIWK****************LDSLAHGVAEIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDIEPSG**N****SS***SSAE*D**ETPRVQSVEDEGDEVMLVDSVNPRTKVREEVVLSGDSEEEDTVMLTDLT****
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MREFPVSNLEKSFVLSGILQNKVKKIIVNIGEDESILKSTTTLEQLLEEINFQRAKEKRQYLRNDMFLTQGTSYWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRRMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTKPKGYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGVAEIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFMSSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQDRQKLGVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDIEPSGIKNQWVSSSDDESSAEDDKAETPRVQSVEDEGDEVMLVDSVNPRTKVREEVVLSGDSEEEDTVMLTDLTPAEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query756 2.2.26 [Sep-21-2011]
Q801S4399 Uncharacterized protein K N/A N/A 0.310 0.588 0.5 3e-63
Q6ICG6404 Uncharacterized protein K yes N/A 0.294 0.551 0.502 6e-62
Q4G008404 Uncharacterized protein K no N/A 0.294 0.551 0.5 8e-59
Q3UE31404 Uncharacterized protein K yes N/A 0.287 0.537 0.475 2e-58
Q3SWZ4440 Exosome complex component no N/A 0.234 0.402 0.491 6e-44
Q06265439 Exosome complex component no N/A 0.234 0.403 0.485 9e-44
Q4QR75437 Exosome complex component no N/A 0.234 0.405 0.485 1e-43
Q9JHI7438 Exosome complex component no N/A 0.234 0.404 0.485 2e-43
O74918291 Exosome complex component yes N/A 0.198 0.515 0.38 1e-33
Q05636305 Exosome complex component yes N/A 0.265 0.659 0.323 7e-33
>sp|Q801S4|K0930_XENLA Uncharacterized protein KIAA0930 homolog OS=Xenopus laevis PE=2 SV=2 Back     alignment and function desciption
 Score =  243 bits (621), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 125/250 (50%), Positives = 174/250 (69%), Gaps = 15/250 (6%)

Query: 74  YWTDLFVRYFLFQTDSNIDCDDLLFFVRKK--YIKTSSRNLPKFETEVEVFRKDSRKLP- 130
           +WT ++  YF+ +       DD+LF+VR+K  Y+     N  + + EVEV+RKDS+KLP 
Sbjct: 31  FWTWMYSTYFMEKWAPR--QDDMLFYVRRKPAYMGPDG-NEGRKQVEVEVYRKDSKKLPG 87

Query: 131 IGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRRMDTK 190
           +GDPD+DWEE+VYLN+I+ + DY +T A+CTR+    + + K+ SQ+V+ASPS+  MD+K
Sbjct: 88  LGDPDIDWEESVYLNLILQKLDYMVTCAVCTRSDAGDIHIHKKKSQQVFASPSKHPMDSK 147

Query: 191 GEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDAL 250
           GE  +++YP + F +DNF EVF D+ V +GEMVCVELVA D+  + + VIF GSIRY+AL
Sbjct: 148 GEESKISYPNIFFMIDNFEEVFSDMTVGEGEMVCVELVARDKTNTFQGVIFQGSIRYEAL 207

Query: 251 KRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTK-----PKGY 305
           K+VYD R SV+ K  Q+MSFG +  N+   +EFV+MKGPQGKG AEMAV++        Y
Sbjct: 208 KKVYDNRVSVAAKMAQKMSFGFYKYNN---MEFVRMKGPQGKGHAEMAVSRVSTGDTSPY 264

Query: 306 GVETPTSEPG 315
           G E   S PG
Sbjct: 265 GTEE-DSNPG 273

Xenopus laevis (taxid: 8355)
>sp|Q6ICG6|K0930_HUMAN Uncharacterized protein KIAA0930 OS=Homo sapiens GN=KIAA0930 PE=1 SV=1 Back     alignment and function description
>sp|Q4G008|K0930_RAT Uncharacterized protein KIAA0930 homolog OS=Rattus norvegicus PE=2 SV=2 Back     alignment and function description
>sp|Q3UE31|K0930_MOUSE Uncharacterized protein KIAA0930 homolog OS=Mus musculus PE=1 SV=2 Back     alignment and function description
>sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1 Back     alignment and function description
>sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3 Back     alignment and function description
>sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2 SV=1 Back     alignment and function description
>sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1 Back     alignment and function description
>sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1 Back     alignment and function description
>sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query756
242025486436 conserved hypothetical protein [Pediculu 0.511 0.887 0.735 1e-172
189236528676 PREDICTED: similar to conserved hypothet 0.468 0.523 0.780 1e-164
345487891706 PREDICTED: hypothetical protein LOC10012 0.477 0.511 0.723 1e-158
328789567692 PREDICTED: hypothetical protein LOC40866 0.486 0.531 0.708 1e-156
340710383684 PREDICTED: hypothetical protein LOC10064 0.486 0.538 0.708 1e-156
383853483689 PREDICTED: uncharacterized protein LOC10 0.484 0.531 0.712 1e-155
157136216 887 hypothetical protein AaeL_AAEL003445 [Ae 0.473 0.403 0.728 1e-155
170047986 871 conserved hypothetical protein [Culex qu 0.473 0.411 0.732 1e-155
158300952 891 AGAP011764-PA [Anopheles gambiae str. PE 0.478 0.406 0.710 1e-154
312381709 1503 hypothetical protein AND_05929 [Anophele 0.473 0.238 0.721 1e-154
>gi|242025486|ref|XP_002433155.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518696|gb|EEB20417.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/389 (73%), Positives = 329/389 (84%), Gaps = 2/389 (0%)

Query: 36  ILKSTTTLEQLLEEINFQRAKEKRQYLRNDMFL--TQGTSYWTDLFVRYFLFQTDSNIDC 93
           +LK+++ +EQL+EEINFQRAKE RQ L++D       GT+YWTDLFVR FLFQT+ +IDC
Sbjct: 15  LLKTSSMMEQLIEEINFQRAKEMRQLLKDDRGYGGMHGTTYWTDLFVRNFLFQTELSIDC 74

Query: 94  DDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSRKLPIGDPDVDWEETVYLNMIIHQFDY 153
           DDLLFFVRKK+IK SSR LPKFETEVEVFRKDS+KLPIGDPD+DWEETVYLN+IIHQFDY
Sbjct: 75  DDLLFFVRKKHIKGSSRYLPKFETEVEVFRKDSKKLPIGDPDIDWEETVYLNLIIHQFDY 134

Query: 154 TLTLAICTRTSPKHLQVLKRHSQKVYASPSRRRMDTKGEVEEMTYPCVCFTVDNFNEVFH 213
            LTLAICTRTS K LQ+LKRHSQKVYASPS RRMDTKGE E+MTYP +CF +DNF+EVF 
Sbjct: 135 VLTLAICTRTSCKELQILKRHSQKVYASPSHRRMDTKGETEDMTYPYICFMIDNFDEVFS 194

Query: 214 DILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVSNKFTQRMSFGIF 273
           DI VRDGEMVCVELVA+DR GS   VIFLGSIRYDALK VYDAR S + K +QRM+FG+F
Sbjct: 195 DITVRDGEMVCVELVATDREGSTHGVIFLGSIRYDALKWVYDARVSANAKMSQRMTFGLF 254

Query: 274 SNNSNSRIEFVKMKGPQGKGFAEMAVTKPKGYGVETPTSEPGYCETDMWDSDWDDDPEDF 333
           S+ S+ RIE+V+MKGP GKG AE+AVTKP G G ETPTSEPG C  DMWD DW+ DPEDF
Sbjct: 255 SSASSGRIEYVRMKGPDGKGHAEVAVTKPPGAGCETPTSEPGLCAVDMWDQDWNQDPEDF 314

Query: 334 YYYRHQRRLSDPSANINMFAKSIWKGPVNKTTAKAVSEDEGLDSLAHGVAEIEAGDMRDE 393
           + YRHQRRLSDPSAN+N F +  WK   +    +  SE+EGLDSLA+ + E+EAGD+RDE
Sbjct: 315 FVYRHQRRLSDPSANLNYFVRGGWKSKSDSVNPRTRSENEGLDSLANTMTEVEAGDVRDE 374

Query: 394 LDDGAYNPLWTMRGFTQTFHFWKESKRAQ 422
           LDDGAYNPLWTM+GFTQTFHFWKE+KRAQ
Sbjct: 375 LDDGAYNPLWTMKGFTQTFHFWKENKRAQ 403

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189236528|ref|XP_975467.2| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] gi|270005304|gb|EFA01752.1| hypothetical protein TcasGA2_TC007350 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|345487891|ref|XP_001604539.2| PREDICTED: hypothetical protein LOC100120947 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328789567|ref|XP_392206.3| PREDICTED: hypothetical protein LOC408669 [Apis mellifera] Back     alignment and taxonomy information
>gi|340710383|ref|XP_003393771.1| PREDICTED: hypothetical protein LOC100647836 [Bombus terrestris] gi|350415534|ref|XP_003490673.1| PREDICTED: hypothetical protein LOC100743471 [Bombus impatiens] Back     alignment and taxonomy information
>gi|383853483|ref|XP_003702252.1| PREDICTED: uncharacterized protein LOC100877391 [Megachile rotundata] Back     alignment and taxonomy information
>gi|157136216|ref|XP_001656778.1| hypothetical protein AaeL_AAEL003445 [Aedes aegypti] gi|108881046|gb|EAT45271.1| AAEL003445-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170047986|ref|XP_001851482.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870233|gb|EDS33616.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|158300952|ref|XP_320746.4| AGAP011764-PA [Anopheles gambiae str. PEST] gi|157013406|gb|EAA00390.4| AGAP011764-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312381709|gb|EFR27395.1| hypothetical protein AND_05929 [Anopheles darlingi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query756
MGI|MGI:2444899404 5031439G07Rik "RIKEN cDNA 5031 0.294 0.551 0.491 9.6e-57
UNIPROTKB|Q3SWZ4440 EXOSC9 "Exosome complex compon 0.399 0.686 0.363 9.2e-53
UNIPROTKB|F1S1T6442 EXOSC9 "Uncharacterized protei 0.292 0.5 0.433 1.3e-52
UNIPROTKB|F1MB54440 EXOSC9 "Exosome complex compon 0.399 0.686 0.360 3e-52
RGD|1307888437 Exosc9 "exosome component 9" [ 0.234 0.405 0.485 1.7e-50
UNIPROTKB|Q06265439 EXOSC9 "Exosome complex compon 0.256 0.441 0.467 1.2e-47
MGI|MGI:1355319438 Exosc9 "exosome component 9" [ 0.391 0.675 0.358 2.1e-47
UNIPROTKB|F1NJI1387 EXOSC9 "Uncharacterized protei 0.253 0.496 0.466 4.4e-46
ZFIN|ZDB-GENE-080204-49208 zgc:172139 "zgc:172139" [Danio 0.216 0.788 0.491 1.5e-40
POMBASE|SPCC757.08291 SPCC757.08 "exosome subunit Rr 0.198 0.515 0.38 2.6e-33
MGI|MGI:2444899 5031439G07Rik "RIKEN cDNA 5031439G07 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 116/236 (49%), Positives = 165/236 (69%)

Query:    74 YWTDLFVRYFLFQTDSNIDCDDLLFFVRKKYIKTSSRNL-------PKFETEVEVFRKDS 126
             +WT +F  YF+ +     D  D+LF+VR+K     +           + E EVEV+R+DS
Sbjct:    31 FWTWMFSTYFMEKLAPRQD--DMLFYVRRKRAYPGNEGTIDGRKAEAEPEVEVEVYRRDS 88

Query:   127 RKLP-IGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRR 185
             +KLP +GDPD+DWEE+V LN+I+ + DY +T A+CTR     + + ++ SQ+V+ASPS+ 
Sbjct:    89 KKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHRKKSQQVFASPSKH 148

Query:   186 RMDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSI 245
              MD+KGE  +M+YP + F +D+F EVF D+ V +GEMVCVELVASD+  + + VIF GSI
Sbjct:   149 PMDSKGEESKMSYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSI 208

Query:   246 RYDALKRVYDARTSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTK 301
             RY+ALK+VYD R SV+ +  Q+MSFG +  N+   +EFV+MKGPQGKG AEMAV++
Sbjct:   209 RYEALKKVYDNRVSVAARMAQKMSFGFYKYNN---MEFVRMKGPQGKGHAEMAVSR 261
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q3SWZ4 EXOSC9 "Exosome complex component RRP45" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1T6 EXOSC9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MB54 EXOSC9 "Exosome complex component RRP45" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1307888 Exosc9 "exosome component 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q06265 EXOSC9 "Exosome complex component RRP45" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1355319 Exosc9 "exosome component 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJI1 EXOSC9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-49 zgc:172139 "zgc:172139" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
POMBASE|SPCC757.08 SPCC757.08 "exosome subunit Rrp45 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6ICG6K0930_HUMANNo assigned EC number0.50210.29490.5519yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query756
pfam09741237 pfam09741, DUF2045, Uncharacterized conserved prot 1e-116
cd11368259 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryot 2e-83
COG2123272 COG2123, COG2123, RNase PH-related exoribonuclease 2e-40
cd11365256 cd11365, RNase_PH_archRRP42, RRP42 subunit of arch 5e-32
cd11369261 cd11369, RNase_PH_RRP43, RRP43 subunit of eukaryot 3e-31
PRK04282271 PRK04282, PRK04282, exosome complex RNA-binding pr 9e-31
cd11358218 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucl 1e-27
cd11367272 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryot 3e-24
pfam01138129 pfam01138, RNase_PH, 3' exoribonuclease family, do 1e-22
>gnl|CDD|192357 pfam09741, DUF2045, Uncharacterized conserved protein (DUF2045) Back     alignment and domain information 
 Score =  349 bits (898), Expect = e-116
 Identities = 132/239 (55%), Positives = 165/239 (69%), Gaps = 8/239 (3%)

Query: 70  QGTSYWTDLFVRYFLFQTDS--NIDCDDLLFFVRKKYIKTSSRNLPKFETEVEVFRKDSR 127
             +++WT +F  YF+   +S    D DDLLFFVR+K    SSR L + E E EV+R+DS 
Sbjct: 3   MDSNFWTGVFDVYFVRCMESRRRQD-DDLLFFVRRKLSCKSSRGLTENEDEPEVYRRDSP 61

Query: 128 KLP-IGDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRR 186
           KLP +GDPDVDWEE+VYLN+I H  DYT+T+AICTR + K L  + + SQ VYASPSR  
Sbjct: 62  KLPELGDPDVDWEESVYLNLIAHTLDYTVTVAICTREALKTLSPIYKVSQTVYASPSRFH 121

Query: 187 MDTKGEVEEMTYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIR 246
           MD+KGEVE + YP +CF VD+F+EVF D++V DGEMVCVELVA D     + VIF GSIR
Sbjct: 122 MDSKGEVETIAYPEICFMVDDFDEVFDDVVVTDGEMVCVELVAHDTVKDPQGVIFSGSIR 181

Query: 247 YDALKRVYDAR-TSVSNKFTQRMSFGIFSNNSNSRIEFVKMKGPQGKGFAEMAVTKPKG 304
           Y ALK+VYD R +   ++  Q MSFG        + EFV+MKGPQGKG AEMAV+    
Sbjct: 182 YQALKKVYDGRRSRFGSRMAQLMSFGHI---KTGKAEFVRMKGPQGKGHAEMAVSGVVD 237

This entry is the conserved 250 residues of proteins of approximately 450 amino acids. It contains several highly conserved motifs including a CVxLxxxD motif.The function is unknown. Length = 237
>gnl|CDD|206773 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|225034 COG2123, COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|206770 cd11365, RNase_PH_archRRP42, RRP42 subunit of archaeal exosome Back     alignment and domain information
>gnl|CDD|206774 cd11369, RNase_PH_RRP43, RRP43 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|235268 PRK04282, PRK04282, exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>gnl|CDD|206766 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|206772 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|216323 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 756
KOG2465|consensus390 100.0
PF09741237 DUF2045: Uncharacterized conserved protein (DUF204 100.0
COG2123272 RNase PH-related exoribonuclease [Translation, rib 100.0
KOG1613|consensus298 100.0
PRK04282271 exosome complex RNA-binding protein Rrp42; Provisi 100.0
KOG1614|consensus291 100.0
KOG1612|consensus288 100.0
PRK00173238 rph ribonuclease PH; Reviewed 100.0
TIGR01966236 RNasePH ribonuclease PH. This bacterial enzyme, ri 100.0
PRK03983244 exosome complex exonuclease Rrp41; Provisional 100.0
TIGR02065230 ECX1 archaeal exosome-like complex exonuclease 1. 100.0
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 99.94
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 99.94
COG0689230 Rph RNase PH [Translation, ribosomal structure and 99.91
PF01138132 RNase_PH: 3' exoribonuclease family, domain 1 This 99.89
KOG1068|consensus245 99.88
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 99.85
PRK11824 693 polynucleotide phosphorylase/polyadenylase; Provis 99.85
TIGR03591 684 polynuc_phos polyribonucleotide nucleotidyltransfe 99.84
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 99.8
KOG1069|consensus217 99.71
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 99.36
KOG1067|consensus760 98.85
PF0372568 RNase_PH_C: 3' exoribonuclease family, domain 2 Th 98.7
TIGR02696 719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 98.36
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 98.15
COG1185 692 Pnp Polyribonucleotide nucleotidyltransferase (pol 97.93
KOG1067|consensus 760 97.02
>KOG2465|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.2e-94  Score=742.02  Aligned_cols=339  Identities=45%  Similarity=0.641  Sum_probs=307.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCe---eeccCchhHHHHHHHhhhccCC-CCCCCCceEEEEeccccccCCCCCCCCcc
Q psy9088          42 TLEQLLEEINFQRAKEKRQYLRNDM---FLTQGTSYWTDLFVRYFLFQTD-SNIDCDDLLFFVRKKYIKTSSRNLPKFET  117 (756)
Q Consensus        42 ~~~~~l~~i~~~r~~~~~~~~~~d~---v~~~~~~fW~~~F~~~f~~~~~-~~~~~DDlLFfVr~~~~~~~~~~~~~~~~  117 (756)
                      +++|+|++|+ +|.|+||+..+||.   ++.+++.|||++|+.||+.+.+ +..++||||||||+++.|.+++.+|+...
T Consensus        10 ~~~q~l~~v~-kr~k~lrkl~~ddgdf~~vq~~s~~W~~lF~~~Fv~~te~~~s~sDDllffVrk~~~ksts~~~~~~~~   88 (390)
T KOG2465|consen   10 SRHQILSMVK-KRSKSLRKLSLDDGDFSDVQMDSNFWHGLFDVYFVRCTESRRSQSDDLLFFVRKLSCKSTSNEDAPAPY   88 (390)
T ss_pred             cHHHHHHHHH-HHHHHHHhhhcccCCceEEeccchhhhhhhhhheeeeccccccCCCceEEeeeehhcccccccCCCCch
Confidence            4999999999 99999999999987   7777899999999999999886 44589999999999999988999999999


Q ss_pred             ceEEEecCCCCCCC-CCCCCchhhhhHHHHhhhcceEEEEEeeecccCCCccceeEEeeeEEecCCCccccCccCCcccc
Q psy9088         118 EVEVFRKDSRKLPI-GDPDVDWEETVYLNMIIHQFDYTLTLAICTRTSPKHLQVLKRHSQKVYASPSRRRMDTKGEVEEM  196 (756)
Q Consensus       118 ~~~v~rr~s~~~p~-~~~~vdW~et~~LNli~~~~~y~lT~avc~~~~~~~l~~~~~~~q~VyASPs~~~mDskg~~~~~  196 (756)
                      .|+|||++|++||. .|++||||||||||+|+||+ |+|||||||+++||+||++|||+|+||||||||+||+|||.|+|
T Consensus        89 ~v~vfr~~s~~lp~~~d~~vdWeetvyLNmi~hq~-ftvT~AiCt~t~pk~lQ~~rk~~qrVyaSPSRr~mDsKgE~Eei  167 (390)
T KOG2465|consen   89 FVRVFRPKSDELPGESDAEVDWEETVYLNMIAHQS-FTVTVAICTNTAPKTLQGSRKVVQRVYASPSRRHMDSKGEVEEI  167 (390)
T ss_pred             HHHhhcchhhcCCCCCCcccChhhhhHHHHhhhhe-eEEEEEeecCCChHHHHHHHhhheeeccCcccccccccCcccee
Confidence            99999999999996 59999999999999999996 99999999999999999999999999999999999999999999


Q ss_pred             cccceEeeecchhhhccceeecCCceEEEEEeeccCCCCceEEEeecchhHHHHHhhhccccchh-hhhhhccccccccc
Q psy9088         197 TYPCVCFTVDNFNEVFHDILVRDGEMVCVELVASDRAGSVKSVIFLGSIRYDALKRVYDARTSVS-NKFTQRMSFGIFSN  275 (756)
Q Consensus       197 ~YP~i~F~iD~Fee~F~~~~v~~~e~~cveL~A~d~~~~~~~viF~Gsv~y~~l~~~y~~~~s~~-~~~~~~~~~g~~~~  275 (756)
                      +||.|||+||||||+|+|++|+|||||||||+|+|      ||+|+|||+|+.|+++||++.|.. .+..++|++|.   
T Consensus       168 tYP~icFavD~FdevF~dvvvrDgecvCVeLva~D------gv~Flgsiryd~lk~vyda~~ss~~~~~~~lms~g~---  238 (390)
T KOG2465|consen  168 TYPEICFAVDDFDEVFDDVVVRDGECVCVELVAHD------GVAFLGSIRYDSLKSVYDADPSSVKDPKVTLMSGGV---  238 (390)
T ss_pred             ccceEEEEecCHHHhhhhhEEecCcEEEEEEeccC------cceeechhhhhhhhhhccCCcchhhchHHHHhhchh---
Confidence            99999999999999999999999999999999999      899999999999999999997655 55577788884   


Q ss_pred             CCCCceeEEEeecCCCCceEEEEEeCCCCCCCCCCCCCCCCCCCccCCCCCCCCchhhhccccccccCCCcccccccccc
Q psy9088         276 NSNSRIEFVKMKGPQGKGFAEMAVTKPKGYGVETPTSEPGYCETDMWDSDWDDDPEDFYYYRHQRRLSDPSANINMFAKS  355 (756)
Q Consensus       276 ~~~~~~efv~m~GP~GkG~aE~Av~~~~~~g~~tp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~  355 (756)
                          +.|||||+||||||||||||++++.+|+|||.+|||     +|| .|+.+..+..+|+++|++++|++|+++|.+ 
T Consensus       239 ----~~efVRm~gpqGkg~aemavs~~~~~G~etpl~e~g-----p~d-~~E~e~~~~~~~~~~~~~~~p~~~~~~f~s-  307 (390)
T KOG2465|consen  239 ----SYEFVRMAGPQGKGRAEMAVSLGHITGKETPLYERG-----PGD-RGEVEVAVSGVVDQSQVVLGPVSPMSSFKS-  307 (390)
T ss_pred             ----HhhHHHhhCcCCCCchheeeeccCCCCccCccccCC-----CCc-chhhhhhhhhhhhhheeeccCCCccccCCC-
Confidence                389999999999999999999999999999999999     677 799999999999999999999999999966 


Q ss_pred             cccCCCCcccccccccccchhccccCccccccCCCccccCccccCcchhcccchhhhcccccccccCCCCCccce
Q psy9088         356 IWKGPVNKTTAKAVSEDEGLDSLAHGVAEIEAGDMRDELDDGAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM  430 (756)
Q Consensus       356 ~~~~~~~~~~~~~~se~~~ld~~~~~~~e~~a~~i~de~~~~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR  430 (756)
                            .+-++..|+|++++|.                      ..+|.++.|.|.||.+.+..|..--..+.|=
T Consensus       308 ------~~vg~~~r~e~s~~d~----------------------~~~~~mra~aa~~hgdrEk~~~ec~p~~~~l  354 (390)
T KOG2465|consen  308 ------IDVGSIFRKEASVADV----------------------AAKHAMRAFAAVWHGDREKKRAECTPLNAFL  354 (390)
T ss_pred             ------Cccchhhhhhccccch----------------------HHhhhHHHHHHhhcchhhhccccCCchhhcc
Confidence                  4456778889998873                      2236677888889977777766554444433

>PF09741 DUF2045: Uncharacterized conserved protein (DUF2045); InterPro: IPR019141 This entry is the conserved 250 residues of proteins of approximately 450 amino acids Back     alignment and domain information
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1613|consensus Back     alignment and domain information
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>KOG1614|consensus Back     alignment and domain information
>KOG1612|consensus Back     alignment and domain information
>PRK00173 rph ribonuclease PH; Reviewed Back     alignment and domain information
>TIGR01966 RNasePH ribonuclease PH Back     alignment and domain information
>PRK03983 exosome complex exonuclease Rrp41; Provisional Back     alignment and domain information
>TIGR02065 ECX1 archaeal exosome-like complex exonuclease 1 Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01138 RNase_PH: 3' exoribonuclease family, domain 1 This Prosite family only includes Ribonuclease PH; InterPro: IPR001247 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information
>KOG1068|consensus Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>KOG1069|consensus Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG1067|consensus Back     alignment and domain information
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1067|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query756
2nn6_A358 Structure Of The Human Rna Exosome Composed Of Rrp4 4e-45
2wp8_A305 Yeast Rrp44 Nuclease Length = 305 6e-34
4ifd_A304 Crystal Structure Of An 11-subunit Eukaryotic Exoso 1e-33
2wnr_A271 The Structure Of Methanothermobacter Thermautotroph 9e-17
2pnz_B277 Crystal Structure Of The P. Abyssi Exosome Rnase Ph 1e-16
2nn6_C278 Structure Of The Human Rna Exosome Composed Of Rrp4 2e-16
2br2_A275 Rnase Ph Core Of The Archaeal Exosome Length = 275 1e-15
2je6_A277 Structure Of A 9-Subunit Archaeal Exosome Length = 1e-15
3l7z_A271 Crystal Structure Of The S. Solfataricus Archaeal E 3e-15
3m85_G259 Archaeoglobus Fulgidus Exosome Y70a With Rna Bound 9e-13
2ba0_I259 Archaeal Exosome Core Length = 259 1e-12
2nn6_E305 Structure Of The Human Rna Exosome Composed Of Rrp4 1e-11
>pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 133/206 (64%), Gaps = 2/206 (0%)
Query: 427 VDFMSSENWTSISAENGEAVWCPWVK--PSEVLAQVSCNMVIPKATRPNEGLLFINAELS 484
           +D   + ++ +I    G    C  V+   + VL QVSC +V PK  R  EG+LF N ELS
Sbjct: 41  LDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELS 100
Query: 485 PMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDG 544
            MA+P FE GRQ+D  V +NR +E+C + SKCID ESLCVVA EKVW +RVDL++LN+DG
Sbjct: 101 QMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDG 160
Query: 545 NLLGCCSIAALAALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGS 604
           N++   SIAA+ AL HFR PDV+  GD++ +++  E+DP+P++I H P+ +S+A F  G+
Sbjct: 161 NIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFAFFQQGT 220
Query: 605 EGSTVPGFTECIQLDTALALSQDRQK 630
                P   E   +D  L ++ ++ +
Sbjct: 221 YLLVDPNEREERVMDGLLVIAMNKHR 246
>pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease Length = 305 Back     alignment and structure
>pdb|4IFD|A Chain A, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 304 Back     alignment and structure
>pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly Length = 271 Back     alignment and structure
>pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp Length = 277 Back     alignment and structure
>pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 278 Back     alignment and structure
>pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome Length = 275 Back     alignment and structure
>pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Length = 277 Back     alignment and structure
>pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome Length = 271 Back     alignment and structure
>pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site Length = 259 Back     alignment and structure
>pdb|2BA0|I Chain I, Archaeal Exosome Core Length = 259 Back     alignment and structure
>pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 305 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query756
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 9e-53
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 4e-51
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 2e-49
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 2e-49
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 1e-45
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 4e-41
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 2e-40
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 5e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Length = 277 Back     alignment and structure
 Score =  183 bits (466), Expect = 9e-53
 Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 2/147 (1%)

Query: 456 VLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESK 515
           VLA     +  P    PN+G L +N EL P+A   FE G   + ++ + R +++  ++SK
Sbjct: 65  VLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRDSK 124

Query: 516 CIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQIII 575
            +DL  L +   + VW V +D+ VL+Y GN+L  C++A++AAL + +   V    + I +
Sbjct: 125 ALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISV 184

Query: 576 HSAAEKDPIPMTILHYPVTISYAVFNG 602
           +       +P+   +  VTIS A  + 
Sbjct: 185 NKNEVVGKLPLN--YPVVTISVAKVDK 209
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 271 Back     alignment and structure
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Length = 277 Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Length = 259 Back     alignment and structure
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 305 Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 278 Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 305 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query756
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 100.0
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 100.0
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 100.0
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 100.0
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 100.0
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 100.0
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 100.0
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 100.0
2wnr_B240 Probable exosome complex exonuclease 1; phosphate 100.0
2nn6_B249 Exosome complex exonuclease RRP41; RNA, exosome, P 100.0
2po1_A249 Probable exosome complex exonuclease 1; RNAse PH, 100.0
2je6_B250 RRP41, exosome complex exonuclease 1; nuclease, hy 100.0
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 100.0
1r6l_A239 Ribonuclease PH; beta-alpha-beta-alpha fold, hexam 100.0
1udn_A255 Ribonuclease PH, RNAse PH; transferase, riken stru 100.0
3m7n_D258 Probable exosome complex exonuclease 1; exosome, R 100.0
2wp8_B246 Exosome complex component SKI6; nucleus, hydrolase 100.0
1oys_A245 Ribonuclease PH; transferase, tRNA processing; 2.4 100.0
3dd6_A255 Ribonuclease PH; exoribonuclease, tRNA maturation, 100.0
2nn6_D237 Exosome complex exonuclease RRP46; RNA, exosome, P 100.0
3hkm_A246 OS03G0854200 protein; RNAse PH domain, phosphoryla 99.98
2nn6_F272 MTR3, exosome component 6; RNA, exosome, PM/SCL, p 99.97
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 99.95
3gme_A549 Polyribonucleotide nucleotidyltransferase; protein 99.95
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 99.95
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 99.95
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 99.94
3krn_A222 Protein C14A4.5, confirmed by transcript evidence; 99.89
3u1k_A 630 Polyribonucleotide nucleotidyltransferase 1, MITO; 99.8
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 99.77
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 99.67
3gme_A 549 Polyribonucleotide nucleotidyltransferase; protein 99.64
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 99.52
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Back     alignment and structure
Probab=100.00  E-value=1e-45  Score=385.74  Aligned_cols=263  Identities=24%  Similarity=0.346  Sum_probs=234.5

Q ss_pred             cccCcchhcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCCCcc
Q psy9088         397 GAYNPLWTMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEG  475 (756)
Q Consensus       397 ~~~~rL~p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG  475 (756)
                      +.+-...|..|+.   ++|++++|+|||+++|+| +.+++|.+++|+|||++  ++|+|+|+|+|++++..|..+.|++|
T Consensus         7 ~~~~s~~~~~~i~---~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v--~~G~T~Vl~~V~~~~~~p~~~~~~~g   81 (277)
T 2po1_B            7 NEIVAGIMRDHII---NLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALV--KLGSTQVLVGIKTSLGEPFPDTPNMG   81 (277)
T ss_dssp             ----CCHHHHHHH---HHHHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEE--EETTEEEEEEEEEEEECCCTTCTTSC
T ss_pred             ccccCccHHHHHH---HHHhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEE--EECCeEEEEEEEecccCCCCCCCCce
Confidence            4566778999999   899999999999999999 89999999999999998  49999999999999988988889999


Q ss_pred             EEEEEEEeCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHH
Q psy9088         476 LLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAAL  555 (756)
Q Consensus       476 ~L~VnVe~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~  555 (756)
                      +|.++++++|+|++.|++|++++.+++++++|+++|+++++||+++|||.||+++|.|+||++||++|||++|||++|++
T Consensus        82 ~l~~~~~~~p~a~~~~~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~  161 (277)
T 2po1_B           82 VMTTNVELVPLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAI  161 (277)
T ss_dssp             EEEEEEEECGGGCTTCCSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHH
T ss_pred             EEEEEEEeCCCccccccCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCceeecCCceEEecCCCCCCCCcccCCceEEEEEEEeCCceeEEEeCChhHhhhcCCceEEEEE-------e
Q psy9088         556 AALAHFRHPDVTSTGDQIIIHSAAEKDPIPMTILHYPVTISYAVFNGGSEGSTVPGFTECIQLDTALALSQD-------R  628 (756)
Q Consensus       556 AAL~dtrIP~V~v~~d~v~I~~~de~e~vpL~i~~iPisvTfgli~d~~~iLvDPT~eEE~~sda~LtVav~-------~  628 (756)
                      +||.++++|++.++++...+...  .+..|+.|+++|+++|||++++  .+++|||.+||..+++.++|+++       +
T Consensus       162 ~AL~da~~p~~~~~~~~~~~~~~--~~~~~ipl~~~~~avs~g~~~~--~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~l  237 (277)
T 2po1_B          162 AALLNARVPKVRYNEETGEVETL--DETEPLPVEKIPVPVTFAKIGN--ILVVDPSLDEELVMDGKITITTDETGHISAV  237 (277)
T ss_dssp             HHHHHCEEEEEEECTTTCCEEEE--EEEEECCBCCCCEEEEEEEETT--EEEESCCHHHHHHCSEEEEEEECTTSCEEEE
T ss_pred             HHHHhcCCCcEEEeCCCceeecc--cccccccccCceEEEEEEEECC--EEEeCCCHHHHhhCCCcEEEEEcCCCCEEEE
Confidence            99999999999998764433332  3344566679999999999998  89999999999999999999987       6


Q ss_pred             ecccccccCHHHHHHHHHHHHhhCccccCcceeeeecccchHHHhhhccCC
Q psy9088         629 QKLGVDSAYANLVNKTDRILLDEGEKDSGETKVKVEKVGPGIADLISKSDI  679 (756)
Q Consensus       629 Qk~G~g~~t~e~l~kai~lAld~~~~~sk~~~~~v~~~~~~i~~~l~~~~~  679 (756)
                      |+.|+++++.+++.+|+++|...           ..++-..+.++|.+.+|
T Consensus       238 q~~g~~~~~~~~l~~~l~~A~~~-----------~~~l~~~~~~~l~~~~~  277 (277)
T 2po1_B          238 QKSEGGAFKLEEVMYAVETAFKK-----------AEEIRKLILEAVEKAKQ  277 (277)
T ss_dssp             EEESSCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTC
T ss_pred             EccCCCCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhccC
Confidence            67777899999999999999988           56666667777766554
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Back     alignment and structure
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Back     alignment and structure
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Back     alignment and structure
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Back     alignment and structure
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Back     alignment and structure
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Back     alignment and structure
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Back     alignment and structure
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 756
d2nn6a1184 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP 1e-28
d2nn6e1187 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP 2e-24
d2ba0g1176 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,E 4e-22
d2nn6c1181 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP 1e-21
d2je6a1191 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,E 2e-18
d2je6b1148 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, 3e-06
d2nn6f1147 d.14.1.4 (F:29-175) Exosome complex exonuclease MT 8e-06
d2ba0d1144 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, 2e-05
d1r6la1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseu 1e-04
d1udsa1149 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aqui 6e-04
d2nn6b1145 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP 0.003
d1oysa1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Baci 0.004
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease RRP45
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 1e-28
 Identities = 75/131 (57%), Positives = 98/131 (74%)

Query: 455 EVLAQVSCNMVIPKATRPNEGLLFINAELSPMASPQFETGRQTDTSVMINRFLEKCFKES 514
            VL QVSC +V PK  R  EG+LF N ELS MA+P FE GRQ+D  V +NR +E+C + S
Sbjct: 54  RVLGQVSCELVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNS 113

Query: 515 KCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFRHPDVTSTGDQII 574
           KCID ESLCVVA EKVW +RVDL++LN+DGN++   SIAA+ AL HFR PDV+  GD++ 
Sbjct: 114 KCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVT 173

Query: 575 IHSAAEKDPIP 585
           +++  E+DP+P
Sbjct: 174 LYTPEERDPVP 184
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Back     information, alignment and structure
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 176 Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 191 Back     information, alignment and structure
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 148 Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 147 Back     information, alignment and structure
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 144 Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 151 Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Length = 149 Back     information, alignment and structure
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Length = 151 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query756
d2nn6a1184 Exosome complex exonuclease RRP45 {Human (Homo sap 100.0
d2ba0g1176 Exosome complex exonuclease 2,ECX2 {Archaeoglobus 100.0
d2nn6e1187 Exosome complex exonuclease RRP42 {Human (Homo sap 100.0
d2nn6c1181 Exosome complex exonuclease RRP43 {Human (Homo sap 100.0
d2je6a1191 Exosome complex exonuclease 2,ECX2 {Sulfolobus sol 100.0
d2ba0d1144 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 99.93
d2je6b1148 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 99.92
d1udsa1149 Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId 99.92
d2nn6b1145 Exosome complex exonuclease RRP41 {Human (Homo sap 99.91
d1r6la1151 Ribonuclease PH, domain 1 {Pseudomonas aeruginosa 99.9
d1oysa1151 Ribonuclease PH, domain 1 {Bacillus subtilis [TaxI 99.89
d2nn6f1147 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.83
d1e3ha3137 Polynucleotide phosphorylase/guanosine pentaphosph 99.76
d2nn6d1122 Exosome complex exonuclease RRP46 {Human (Homo sap 99.71
d1e3ha2149 Polynucleotide phosphorylase/guanosine pentaphosph 99.34
d2nn6a2118 Exosome complex exonuclease RRP45 {Human (Homo sap 99.17
d2nn6e294 Exosome complex exonuclease RRP42 {Human (Homo sap 99.14
d2nn6c289 Exosome complex exonuclease RRP43 {Human (Homo sap 99.11
d2ba0g279 Exosome complex exonuclease 2, ECX2 {Archaeoglobus 99.09
d2je6a284 Exosome complex exonuclease 2, ECX2 {Sulfolobus so 99.0
d2nn6d289 Exosome complex exonuclease RRP46 {Human (Homo sap 98.3
d2je6b286 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 98.13
d2nn6b290 Exosome complex exonuclease RRP41 {Human (Homo sap 98.1
d1r6la288 Ribonuclease PH, domain 2 {Pseudomonas aeruginosa 97.64
d2ba0d299 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 97.48
d2nn6f295 Exosome complex exonuclease MTR3 {Human (Homo sapi 97.33
d1udsa2105 Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId 97.24
d1oysa286 Ribonuclease PH, domain 2 {Bacillus subtilis [TaxI 97.15
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease RRP45
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-34  Score=282.60  Aligned_cols=174  Identities=47%  Similarity=0.802  Sum_probs=162.6

Q ss_pred             hcccchhhhcccccccccCCCCCccce-eEEeeccccccccceEeecccCCcEEEEEEEeeecCCCCCCCCccEEEEEEE
Q psy9088         404 TMRGFTQTFHFWKESKRAQDWTDVDFM-SSENWTSISAENGEAVWCPWVKPSEVLAQVSCNMVIPKATRPNEGLLFINAE  482 (756)
Q Consensus       404 p~~~~eq~~r~L~~giRpDGR~~~efR-~~I~tGvIssAnGSA~vsa~Vg~GkVIcgVK~EV~~P~~~~P~eG~L~VnVe  482 (756)
                      ...|+.   ++|++++|+|||+++|+| +.+++|   +++|||++.  +|+|+|+|+|++++..|...+|++|.+.++++
T Consensus        10 e~~fi~---~~l~~~~R~DGR~~~e~R~~~i~~g---~a~GSa~v~--~G~T~V~~~V~~~~~~p~~~~~~~g~~~~~v~   81 (184)
T d2nn6a1          10 ERRFLL---RAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVE--LGKTRVLGQVSCELVSPKLNRATEGILFFNLE   81 (184)
T ss_dssp             HHHHHH---HHHHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEE--SSSCEEEEEECCEEECCCSTTTTSCCEEEEEE
T ss_pred             HHHHHH---HHHhhCcCCCCCCCCCcCCeEEEec---CCCCEEEEE--eCCCEEEEEEEeccccccccCCCccceeEEEE
Confidence            456777   889999999999999999 788887   599999984  99999999999999999999999999999999


Q ss_pred             eCCCCCcCcccCCCChhHHHHHHHHHHHhhccCccccccceeecceeeEEEEEEEEEecCCCchhhHHHHHHHHHHhhCC
Q psy9088         483 LSPMASPQFETGRQTDTSVMINRFLEKCFKESKCIDLESLCVVAEEKVWNVRVDLNVLNYDGNLLGCCSIAALAALAHFR  562 (756)
Q Consensus       483 ~sP~asp~fr~Gr~se~a~eLSslL~r~L~sS~~IDLEsLCI~pGK~vW~L~VDV~VLs~DGNLlDAaslAa~AAL~dtr  562 (756)
                      ++|++++.++.+.+++.+..+++.|++.+..+.++|+++|||.+|+++|.|+|||+||++|||++|||++|+++||+|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~L~i~~~~~~w~i~i~v~VL~~DG~~~da~~~a~~~AL~~~~  161 (184)
T d2nn6a1          82 LSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFR  161 (184)
T ss_dssp             ECTTTCSSCCSSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCC
T ss_pred             eccccCcccccCCCCchhHHHHHHHHhhhhhhhhhhhhhhccccccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHhhC
Confidence            99999999988888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeecCCceEEecCCCCCCCC
Q psy9088         563 HPDVTSTGDQIIIHSAAEKDPIP  585 (756)
Q Consensus       563 IP~V~v~~d~v~I~~~de~e~vp  585 (756)
                      ||.+.+.++.+.++.+++++++|
T Consensus       162 iP~v~v~~~~~~~~~~~e~epvp  184 (184)
T d2nn6a1         162 RPDVSVQGDEVTLYTPEERDPVP  184 (184)
T ss_dssp             CCCCBCCTTCCBCCHHHHTSCCC
T ss_pred             CCeEEEeCCceEEcCCccccCCC
Confidence            99999999888887777777765
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure