Psyllid ID: psy90

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEccccccccccccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEEEEEEccccccccccEEEEEEEccccccccccEEEEccccccccEccccccccccHHHHHHHHHHHHHcccccccccHHHHHHH
Coil and Loop (DISEMBL)
msgiaigrlseerkgwrkdhpfgfvakpaknpdgslnlmnwecsipgkkgtpwesgsYKLRMIfkddypstppkckfepplfhpnvypsdwkpaiTIKQILLGIQDllnepnikdpaqaeaytiy
Flexible Loop (DISEMBL)
msgiaigrlseerkgwrkdhpFGFVAKpaknpdgslnLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLlnepnikdpaqaeaytiy
Low Complexity Region (SEG)
MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY
Disordered region (IsUnstruct)
*********************FGFV**********LNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLN****************
Disordered Region (DISOPRED)
****AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY
Disordered Region (DISEMBL)
MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY
Disordered Region (DISPRO)
****AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q28CQ4	158	SUMO-conjugating enzyme U	yes	N/A	1.0	0.791	0.781	4e-60
P63282	158	SUMO-conjugating enzyme U	N/A	N/A	1.0	0.791	0.781	4e-60
Q2EF73	158	SUMO-conjugating enzyme U	N/A	N/A	1.0	0.791	0.781	4e-60
P63281	158	SUMO-conjugating enzyme U	yes	N/A	1.0	0.791	0.781	4e-60
P63280	158	SUMO-conjugating enzyme U	yes	N/A	1.0	0.791	0.781	4e-60
P63279	158	SUMO-conjugating enzyme U	yes	N/A	1.0	0.791	0.781	4e-60
P63283	158	SUMO-conjugating enzyme U	yes	N/A	1.0	0.791	0.781	4e-60
Q9DDJ0	157	SUMO-conjugating enzyme U	yes	N/A	1.0	0.796	0.781	5e-60
Q9W6H5	158	SUMO-conjugating enzyme U	yes	N/A	1.0	0.791	0.781	6e-60
O09181	158	SUMO-conjugating enzyme U	N/A	N/A	1.0	0.791	0.744	6e-58

>sp|Q28CQ4|UBC9_XENTR SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation.
Xenopus tropicalis (taxid: 8364)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|P63282|UBC9_XENLA SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q2EF73|UBC9_SPETR SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5.

Spermophilus tridecemlineatus (taxid: 43179)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63281|UBC9_RAT SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63280|UBC9_MOUSE SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture, chromosome segregation and embryonic viability. Necessary for sumoylation of FOXL2 and KAT5.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63279|UBC9_HUMAN SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins SUMO1, SUMO2, SUMO3 and SUMO4 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Necessary for sumoylation of FOXL2 and KAT5. Essential for nuclear architecture and chromosome segregation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63283|UBC9_CHICK SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Essential for nuclear architecture and chromosome segregation.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9DDJ0|UBC9B_DANRE SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1

 Score =  229 bits (583), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation (By similarity). Mediates nuclear localization of vsx1. Required for progression through mitosis during organogenesis.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9W6H5|UBC9A_DANRE SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1

 Score =  228 bits (582), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation (By similarity). Mediates nuclear localization of vsx1. Required for progression through mitosis during organogenesis.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O09181|UBC9_MESAU SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1

 Score =  222 bits (565), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 102/137 (74%), Positives = 117/137 (85%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITI Q+ +GIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI++PAQAEAYTIY
Sbjct: 121 NEPNIQEPAQAEAYTIY 137

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation. Necessary for sumoylation of FOXL2 and KAT5.

Mesocricetus auratus (taxid: 10036)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
383848689	708	PREDICTED: uncharacterized protein LOC10	1.0	0.176	0.810	4e-65
350407955	653	PREDICTED: hypothetical protein LOC10074	1.0	0.191	0.810	5e-65
307170257	612	SUMO-conjugating enzyme UBC9 [Camponotus	1.0	0.204	0.817	1e-62
209972750	160	ubiquitin-conjugating enzyme E2 [Scylla	1.0	0.781	0.824	2e-61
321470995	163	hypothetical protein DAPPUDRAFT_230818 [	1.0	0.766	0.824	3e-61
408842895	160	ubiquitin-conjugating enzyme E2 c [Litop	1.0	0.781	0.817	6e-61
444727283	1440	BAI1-associated protein 3 [Tupaia chinen	1.0	0.086	0.781	7e-61
241834470	174	ubiquitin protein ligase, putative [Ixod	1.0	0.718	0.802	1e-60
156404588	158	predicted protein [Nematostella vectensi	1.0	0.791	0.817	1e-60
242012069	159	SUMO-1-conjugating enzyme UBC9, putative	1.0	0.786	0.817	1e-60

>gi|383848689|ref|XP_003699980.1| PREDICTED: uncharacterized protein LOC100881261 [Megachile rotundata]

 Score =  251 bits (640), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 111/137 (81%), Positives = 118/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIAI RL+EERK WRKDHPFGFVA+P KN DGSLNLM+WEC+IPGKK TPWE G YKL
Sbjct: 550 MSGIAIARLAEERKAWRKDHPFGFVARPIKNQDGSLNLMSWECAIPGKKSTPWEGGLYKL 609

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RMIFKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQDLL
Sbjct: 610 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 669

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPN+KDPAQAEAYTIY
Sbjct: 670 NEPNVKDPAQAEAYTIY 686

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407955|ref|XP_003488254.1| PREDICTED: hypothetical protein LOC100741621 [Bombus impatiens]

 Score =  251 bits (640), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 111/137 (81%), Positives = 118/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIAI RL+EERK WRKDHPFGFVA+P KN DG+LNLMNWEC+IPGKK TPWE G YKL
Sbjct: 495 MSGIAIARLAEERKAWRKDHPFGFVARPVKNQDGTLNLMNWECAIPGKKSTPWEGGLYKL 554

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RMIFKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQDLL
Sbjct: 555 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 614

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPN+KDPAQAEAYTIY
Sbjct: 615 NEPNVKDPAQAEAYTIY 631

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170257|gb|EFN62617.1| SUMO-conjugating enzyme UBC9 [Camponotus floridanus]

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIAI RL+EERK WRKDHPFGFVA+P KNPDGSLNLM+WEC+IPGKK TPWE G YKL
Sbjct: 454 MSGIAIARLAEERKAWRKDHPFGFVARPTKNPDGSLNLMSWECAIPGKKSTPWEGGLYKL 513

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RMIFKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQDLL
Sbjct: 514 RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 573

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPN+KDPAQAEAYTIY
Sbjct: 574 NEPNVKDPAQAEAYTIY 590

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209972750|gb|ACJ03792.1| ubiquitin-conjugating enzyme E2 [Scylla paramamosain] gi|291062115|gb|ADD73553.1| ubiquitin-conjugating enzyme [Macrobrachium nipponense]

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/137 (82%), Positives = 121/137 (88%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIAI RL+EERK WRKDHPFGF+A+P KNPDG+LNLMNWEC+IPGKKGTPWESG Y+L
Sbjct: 1   MSGIAIARLAEERKAWRKDHPFGFIARPTKNPDGTLNLMNWECAIPGKKGTPWESGLYRL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RMIFKDDYPSTPPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQDLL
Sbjct: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           N+PNIKDPAQAEAYTIY
Sbjct: 121 NDPNIKDPAQAEAYTIY 137

Source: Scylla paramamosain

Species: Scylla paramamosain

Genus: Scylla

Family: Portunidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470995|gb|EFX81969.1| hypothetical protein DAPPUDRAFT_230818 [Daphnia pulex]

 Score =  238 bits (608), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/137 (82%), Positives = 121/137 (88%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIAI RLSEERKGWRKDHPFGFVA+P KNPDG+LNLMNWEC+IPGKK TPWE+G YK+
Sbjct: 1   MSGIAIARLSEERKGWRKDHPFGFVARPTKNPDGTLNLMNWECAIPGKKSTPWENGLYKI 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RMIFKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQDLL
Sbjct: 61  RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           N+PNIKDPAQAEAYTIY
Sbjct: 121 NDPNIKDPAQAEAYTIY 137

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|408842895|gb|AFU93453.1| ubiquitin-conjugating enzyme E2 c [Litopenaeus vannamei]

 Score =  237 bits (605), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 121/137 (88%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIAI RL+EERK WRKDHPFGF+A+P KNPDG+LNLMNWEC+IPGKKGTPWE+G Y+L
Sbjct: 1   MSGIAIARLAEERKAWRKDHPFGFIARPTKNPDGTLNLMNWECAIPGKKGTPWENGLYRL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RMIFKDDYPSTPPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQDLL
Sbjct: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           N+PNIKDPAQAEAYTIY
Sbjct: 121 NDPNIKDPAQAEAYTIY 137

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|444727283|gb|ELW67784.1| BAI1-associated protein 3 [Tupaia chinensis]

 Score =  237 bits (605), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 71  MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 130

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 131 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 190

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 191 NEPNIQDPAQAEAYTIY 207

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|241834470|ref|XP_002414996.1| ubiquitin protein ligase, putative [Ixodes scapularis] gi|215509208|gb|EEC18661.1| ubiquitin protein ligase, putative [Ixodes scapularis]

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 118/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIAI RLSEERK WRKDHPFGFVA+P KN DG+LNL+NWEC+IPGK GTPWE G YKL
Sbjct: 16  MSGIAIARLSEERKAWRKDHPFGFVARPTKNNDGTLNLLNWECAIPGKTGTPWEGGLYKL 75

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPSTPPKCKFEPPLFHPNVYPS            DW+PAITIKQILLG+QDLL
Sbjct: 76  RMVFKDDYPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGVQDLL 135

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPN+KDPAQAEAYTIY
Sbjct: 136 NEPNVKDPAQAEAYTIY 152

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156404588|ref|XP_001640489.1| predicted protein [Nematostella vectensis] gi|156227623|gb|EDO48426.1| predicted protein [Nematostella vectensis]

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 120/137 (87%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+GRL+EERK WRKDHPFGFVAKP KN DGSLNLMNWEC+IPGKKGTPWE+G Y L
Sbjct: 1   MSGIALGRLAEERKAWRKDHPFGFVAKPVKNEDGSLNLMNWECAIPGKKGTPWENGKYML 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RMIFKDDYPSTPPKCKFEPP+FHPNVYPS            DW+PA+TIKQILLGIQDLL
Sbjct: 61  RMIFKDDYPSTPPKCKFEPPIFHPNVYPSGTVCLSLLDEEKDWRPAVTIKQILLGIQDLL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           N+PNIKDPAQAEAYTIY
Sbjct: 121 NDPNIKDPAQAEAYTIY 137

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|242012069|ref|XP_002426763.1| SUMO-1-conjugating enzyme UBC9, putative [Pediculus humanus corporis] gi|212510945|gb|EEB14025.1| SUMO-1-conjugating enzyme UBC9, putative [Pediculus humanus corporis]

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 119/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIAI RL+EERK WRKDHPF FVA+P KNPDGSLNLM+WEC+IPGKKGTPWE G Y+L
Sbjct: 1   MSGIAIARLAEERKAWRKDHPFAFVARPCKNPDGSLNLMSWECAIPGKKGTPWEGGQYRL 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RMIFKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQDLL
Sbjct: 61  RMIFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNIKDPAQAEAYTIY
Sbjct: 121 NEPNIKDPAQAEAYTIY 137

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
FB|FBgn0010602	159	lwr "lesswright" [Drosophila m	1.0	0.786	0.817	1.5e-58
UNIPROTKB|F1P5D0	162	UBE2I "SUMO-conjugating enzyme	1.0	0.771	0.781	1.1e-57
UNIPROTKB|P63283	158	UBE2I "SUMO-conjugating enzyme	1.0	0.791	0.781	1.1e-57
UNIPROTKB|A6H744	158	UBE2I "Uncharacterized protein	1.0	0.791	0.781	1.1e-57
UNIPROTKB|B0QYN7	184	UBE2I "SUMO-conjugating enzyme	1.0	0.679	0.781	1.1e-57
UNIPROTKB|H3BQQ9	137	UBE2I "SUMO-conjugating enzyme	1.0	0.912	0.781	1.1e-57
UNIPROTKB|P63279	158	UBE2I "SUMO-conjugating enzyme	1.0	0.791	0.781	1.1e-57
UNIPROTKB|I3LSZ1	158	UBE2I "Uncharacterized protein	1.0	0.791	0.781	1.1e-57
UNIPROTKB|P63282	158	ube2i "SUMO-conjugating enzyme	1.0	0.791	0.781	1.1e-57
MGI|MGI:107365	158	Ube2i "ubiquitin-conjugating e	1.0	0.791	0.781	1.1e-57

FB|FBgn0010602 lwr "lesswright" [Drosophila melanogaster (taxid:7227)]

 Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
 Identities = 112/137 (81%), Positives = 118/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIAI RL EERK WRKDHPFGFVA+PAKNPDG+LNLM WEC+IPGKK TPWE G YKL
Sbjct:     1 MSGIAITRLGEERKAWRKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKSTPWEGGLYKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RMIFKDDYP++PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQDLL
Sbjct:    61 RMIFKDDYPTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNIKDPAQAEAYTIY
Sbjct:   121 NEPNIKDPAQAEAYTIY 137

GO:0019789 "SUMO ligase activity" evidence=IGI;ISS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0016925 "protein sumoylation" evidence=ISS;IMP

GO:0006464 "cellular protein modification process" evidence=IGI;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=IMP;IPI

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IGI

GO:0007143 "female meiosis" evidence=IGI

GO:0016321 "female meiosis chromosome segregation" evidence=IGI

GO:0035172 "hemocyte proliferation" evidence=IMP

GO:0035207 "negative regulation of hemocyte proliferation" evidence=IMP

GO:0035204 "negative regulation of lamellocyte differentiation" evidence=IMP

GO:0045751 "negative regulation of Toll signaling pathway" evidence=IMP

GO:0006959 "humoral immune response" evidence=IMP

GO:0007391 "dorsal closure" evidence=IMP

GO:0071560 "cellular response to transforming growth factor beta stimulus" evidence=IGI

GO:0000940 "condensed chromosome outer kinetochore" evidence=IDA

GO:0000780 "condensed nuclear chromosome, centromeric region" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

UNIPROTKB|F1P5D0 UBE2I "SUMO-conjugating enzyme UBC9" [Gallus gallus (taxid:9031)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     5 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 64

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    65 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 124

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   125 NEPNIQDPAQAEAYTIY 141

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

UNIPROTKB|P63283 UBE2I "SUMO-conjugating enzyme UBC9" [Gallus gallus (taxid:9031)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   121 NEPNIQDPAQAEAYTIY 137

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A6H744 UBE2I "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   121 NEPNIQDPAQAEAYTIY 137

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|B0QYN7 UBE2I "SUMO-conjugating enzyme UBC9" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   121 NEPNIQDPAQAEAYTIY 137

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|H3BQQ9 UBE2I "SUMO-conjugating enzyme UBC9" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   121 NEPNIQDPAQAEAYTIY 137

GO:0001650 "fibrillar center" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|P63279 UBE2I "SUMO-conjugating enzyme UBC9" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   121 NEPNIQDPAQAEAYTIY 137

GO:0005524 "ATP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001650 "fibrillar center" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0016605 "PML body" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071535 "RING-like zinc finger domain binding" evidence=IPI

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0000795 "synaptonemal complex" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0019789 "SUMO ligase activity" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|I3LSZ1 UBE2I "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   121 NEPNIQDPAQAEAYTIY 137

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|P63282 ube2i "SUMO-conjugating enzyme UBC9" [Xenopus laevis (taxid:8355)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   121 NEPNIQDPAQAEAYTIY 137

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:107365 Ube2i "ubiquitin-conjugating enzyme E2I" [Mus musculus (taxid:10090)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 107/137 (78%), Positives = 119/137 (86%)

Query:     1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct:     1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60

Query:    61 RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
             RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct:    61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120

Query:   109 NEPNIKDPAQAEAYTIY 125
             NEPNI+DPAQAEAYTIY
Sbjct:   121 NEPNIQDPAQAEAYTIY 137

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001650 "fibrillar center" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016604 "nuclear body" evidence=ISO;IDA

GO:0016605 "PML body" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0019048 "virus-host interaction" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043398 "HLH domain binding" evidence=IPI

GO:0043425 "bHLH transcription factor binding" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DDJ0	UBC9B_DANRE	6, ., 3, ., 2, ., -	0.7810	1.0	0.7961	yes	N/A
P63280	UBC9_MOUSE	6, ., 3, ., 2, ., -	0.7810	1.0	0.7911	yes	N/A
Q2EF73	UBC9_SPETR	6, ., 3, ., 2, ., -	0.7810	1.0	0.7911	N/A	N/A
Q42551	SCE1_ARATH	6, ., 3, ., 2, ., -	0.5955	0.992	0.775	yes	N/A
O09181	UBC9_MESAU	6, ., 3, ., 2, ., -	0.7445	1.0	0.7911	N/A	N/A
P40984	UBC9_SCHPO	6, ., 3, ., 2, ., -	0.6277	1.0	0.7961	yes	N/A
P63279	UBC9_HUMAN	6, ., 3, ., 2, ., -	0.7810	1.0	0.7911	yes	N/A
Q6Y1Z4	UBC9_PAGMA	6, ., 3, ., 2, ., -	0.7518	1.0	0.7911	N/A	N/A
P50623	UBC9_YEAST	6, ., 3, ., 2, ., -	0.5255	1.0	0.7961	yes	N/A
P63283	UBC9_CHICK	6, ., 3, ., 2, ., -	0.7810	1.0	0.7911	yes	N/A
P63282	UBC9_XENLA	6, ., 3, ., 2, ., -	0.7810	1.0	0.7911	N/A	N/A
P63281	UBC9_RAT	6, ., 3, ., 2, ., -	0.7810	1.0	0.7911	yes	N/A
Q95017	UBC9_CAEEL	6, ., 3, ., 2, ., -	0.7299	1.0	0.7530	yes	N/A
Q9W6H5	UBC9A_DANRE	6, ., 3, ., 2, ., -	0.7810	1.0	0.7911	yes	N/A
Q28CQ4	UBC9_XENTR	6, ., 3, ., 2, ., -	0.7810	1.0	0.7911	yes	N/A
Q9NGP4	UBC9_DICDI	6, ., 3, ., 2, ., -	0.6	0.944	0.7421	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	125
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-46
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	1e-43
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	9e-43
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	5e-39
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	4e-16
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	8e-16

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  146 bits (371), Expect = 1e-46
 Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 16/129 (12%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E K   KD P G  A P  +     NL  WE +I G +GTP+E G +KL + F +D
Sbjct: 1   RLQKELKELLKDPPPGISAFPVDD-----NLFEWEVTIIGPEGTPYEGGVFKLDIEFPED 55

Query: 68  YPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK KF   ++HPNV PS           +W PA+TI+Q+LL IQ LL+EPN +DP
Sbjct: 56  YPFKPPKVKFTTKIYHPNVDPSGEICLDILKDENWSPALTIEQVLLSIQSLLSEPNPEDP 115

Query: 117 AQAEAYTIY 125
             AEA  +Y
Sbjct: 116 LNAEAAKLY 124

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  139 bits (353), Expect = 1e-43
 Identities = 55/135 (40%), Positives = 71/135 (52%), Gaps = 14/135 (10%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
            S  A+ RL +E K  +KD P G  A P  +     NL +WE +I G   TP+E G +KL
Sbjct: 2   SSPSALKRLLKELKKLQKDPPPGISAGPVDDD----NLFHWEATITGPPDTPYEGGIFKL 57

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
            + F +DYP  PPK +F   +FHPNV PS           W P  T++ ILL +Q LL  
Sbjct: 58  TLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLS 117

Query: 111 PNIKDPAQAEAYTIY 125
           PN   P   EA T+Y
Sbjct: 118 PNPDSPLNTEAATLY 132

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  137 bits (346), Expect = 9e-43
 Identities = 54/129 (41%), Positives = 72/129 (55%), Gaps = 15/129 (11%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E K  RKD P GF A P  +     NL+ W  +I G  GTP+E G +KL + F +D
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDE----NLLEWTGTIVGPPGTPYEGGVFKLTIEFPED 56

Query: 68  YPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK KF   ++HPNV  S            W PA+T++ +LL +Q LL+EPN   P
Sbjct: 57  YPFKPPKVKFITKIYHPNVDSSGEICLDILKQEKWSPALTLETVLLSLQSLLSEPNPDSP 116

Query: 117 AQAEAYTIY 125
             A+A  +Y
Sbjct: 117 LNADAAELY 125

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  127 bits (322), Expect = 5e-39
 Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 16/129 (12%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E K  +KD P G  A+P +      NL+ W  +I G   TP+E G +KL + F +D
Sbjct: 3   RLQKELKDLKKDPPSGISAEPVEE-----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPED 57

Query: 68  YPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK +F   ++HPNV  +            W PA T++ +LL +Q LLNEPN  DP
Sbjct: 58  YPFKPPKVRFVTKIYHPNVDENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDP 117

Query: 117 AQAEAYTIY 125
             AEA  +Y
Sbjct: 118 LNAEAAKLY 126

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 69.4 bits (169), Expect = 4e-16
 Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 15/132 (11%)

Query: 4   IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
           +A  R+ +E K   KD P    A P+       NL  W  SI G   +P+  G + L ++
Sbjct: 1   MATKRIQKEHKDLLKDPPSNCSAGPSDE-----NLFRWTASIIGPSDSPYAGGVFFLSIL 55

Query: 64  FKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNI 113
           F  DYP  PPK +F   ++HPN+  +           W PA+T+ ++LL I  LL +PN 
Sbjct: 56  FPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNP 115

Query: 114 KDPAQAEAYTIY 125
            DP   E   ++
Sbjct: 116 DDPLVPEIARVF 127

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 68.7 bits (168), Expect = 8e-16
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 15/119 (12%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +    D P G  A+P  +P    N  +++  + G  GTP+E G YKL +   + 
Sbjct: 6   RIEKETQNLANDPPPGIKAEP--DPG---NYRHFKILMEGPDGTPYEGGYYKLELFLPEQ 60

Query: 68  YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK +F   ++HPN          +    W PA+ I+ +LL IQ LL+ P   DP
Sbjct: 61  YPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDP 119

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0419|consensus	152		100.0
KOG0417|consensus	148		100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0425|consensus	171		100.0
KOG0424|consensus	158		100.0
KOG0421|consensus	175		100.0
KOG0418|consensus	200		100.0
KOG0426|consensus	165		100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0422|consensus	153		100.0
KOG0416|consensus	189		99.97
KOG0420|consensus	184		99.97
KOG0423|consensus	223		99.96
KOG0894|consensus	244		99.96
KOG0427|consensus	161		99.95
KOG0428|consensus	314		99.86
KOG0429|consensus	258		99.81
KOG0896|consensus	138		99.57
KOG0895|consensus	1101		99.52
KOG0895|consensus	1101		99.48
KOG0897|consensus	122		97.78
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.59
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	97.42
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.72
smart00591	107	RWD domain in RING finger and WD repeat containing	96.28
KOG2391|consensus	365		96.19
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	94.68
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	94.17
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	92.87
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	92.68
KOG3357|consensus	167		90.56
KOG4018|consensus	215		87.99
KOG0309|consensus	1081		87.59
PF06113	333	BRE: Brain and reproductive organ-expressed protei	83.01

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-46  Score=256.85  Aligned_cols=119  Identities=45%  Similarity=0.821  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.+.+||++|++++++++++++++.+.++.    |+++|+++|.||++||||||+|++.|.||++||++||+|+|.|+||
T Consensus         4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~----~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~   79 (153)
T COG5078           4 PSALKRLLKELKKLQKDPPPGISAGPVDDD----NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF   79 (153)
T ss_pred             hhHHHHHHHHHHHHhcCCCCceEEEECCCC----cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc
Confidence            349999999999999999999999999764    9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||+.+          +|+|+++|++||.+|+++|.+||.+||+|.|||++|
T Consensus        80 HPNV~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~  132 (153)
T COG5078          80 HPNVDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLY  132 (153)
T ss_pred             CCCcCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHH
Confidence            9999965          899999999999999999999999999999999875

>KOG0419|consensus

Probab=100.00  E-value=1.2e-46  Score=247.49  Aligned_cols=120  Identities=42%  Similarity=0.814  Sum_probs=118.3

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||..|.+||++|+++++++++.|+++.|.++     |++.|.+.|+||.+|||+||+|++.|+|+++||.+||.|+|+++
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P~~~-----niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~   75 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAPVEN-----NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSK   75 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCCCcc-----ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeee
Confidence            8999999999999999999999999999998     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +||||||.+          .|+|.|++.+||.+||+||.+|++++|+|.|||+||
T Consensus        76 mFHPNvya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf  130 (152)
T KOG0419|consen   76 MFHPNVYADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLF  130 (152)
T ss_pred             ccCCCcCCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence            999999998          899999999999999999999999999999999987

>KOG0417|consensus

Probab=100.00  E-value=2.2e-46  Score=251.79  Aligned_cols=116  Identities=38%  Similarity=0.781  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      +.+||.||++++++++++|+++.+.++     |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~d-----nl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHP   76 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGD-----NLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHP   76 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCC-----ceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccC
Confidence            467999999999999999999998777     999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+..          .|+|++||.+||++|+++|.+||++||++.++|.+|
T Consensus        77 NI~~~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~  127 (148)
T KOG0417|consen   77 NIDSNGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELY  127 (148)
T ss_pred             CcCccccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHH
Confidence            99966          899999999999999999999999999999999876

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=1.3e-42  Score=239.31  Aligned_cols=116  Identities=34%  Similarity=0.701  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      +.|||++|+++++++++.|+.+.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~-----d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HP   77 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPG-----NYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHP   77 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCC-----CccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeec
Confidence            589999999999999999999998876     999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+.+          +|+|++|+++||++|+++|.+|++++|+|.+||++|
T Consensus        78 NV~~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~  128 (152)
T PTZ00390         78 NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHF  128 (152)
T ss_pred             eECCCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence            99976          799999999999999999999999999999999986

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=1.4e-42  Score=238.17  Aligned_cols=116  Identities=37%  Similarity=0.770  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      +.+||++|++++++++++++++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~-----nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   76 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSDE-----NLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHP   76 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECCC-----ChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccc
Confidence            479999999999999999999998876     999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+.+          +|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus        77 Nv~~~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~  127 (147)
T PLN00172         77 NINSNGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVF  127 (147)
T ss_pred             eECCCCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence            99977          799999999999999999999999999999999876

>KOG0425|consensus

Probab=100.00  E-value=1.6e-40  Score=224.11  Aligned_cols=119  Identities=34%  Similarity=0.627  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.+..-|+++|++|++++..|+++...++.    |+++|.|.|+||++|.|+||.|+..+.||.+||++||+++|.|+||
T Consensus         4 ~~a~~ll~~qlk~L~~~pv~gf~~glvd~~----dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw   79 (171)
T KOG0425|consen    4 SQASLLLLKQLKELQEEPVEGFSVGLVDDS----DIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW   79 (171)
T ss_pred             chhHHHHHHHHHHHhcCCCCccccccccCC----ceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc
Confidence            456778999999999999999999887764    9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            83 HPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||.+                       .|+|..|+++||++|.+||.+||.++|+|.|||+.|
T Consensus        80 HPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~  145 (171)
T KOG0425|consen   80 HPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEW  145 (171)
T ss_pred             CCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHH
Confidence            9999998                       799999999999999999999999999999999865

>KOG0424|consensus

Probab=100.00  E-value=2.3e-39  Score=215.73  Aligned_cols=125  Identities=82%  Similarity=1.473  Sum_probs=121.6

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||..+..||+.|-+.+.++.+.|+++.|..+.|+..|++.|++.|-|+.||+||||.|.+++.||++||.+||+++|.++
T Consensus         1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p   80 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP   80 (158)
T ss_pred             CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence            88999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      .||||||.+            +|+|+.||.+||.+|++||.+||..||+|.||...|
T Consensus        81 l~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~  137 (158)
T KOG0424|consen   81 LFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIY  137 (158)
T ss_pred             CcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHH
Confidence            999999998            699999999999999999999999999999998765

>KOG0421|consensus

Probab=100.00  E-value=1.4e-38  Score=212.17  Aligned_cols=118  Identities=39%  Similarity=0.661  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      ....|||++|+..|+....+||++.|.++     |++.|..+|.||.+|+|+|-.|++.+.||.+||++||.|+|+|+.|
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~d-----nlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~  102 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPGISAFPESD-----NLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCF  102 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcccCcCcC-----ceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeecccc
Confidence            35789999999999999999999999988     9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||+..          .|+..|.+++||++||++|-+||.++|||..||+++
T Consensus       103 HPNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW  155 (175)
T KOG0421|consen  103 HPNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELW  155 (175)
T ss_pred             CCCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHh
Confidence            9999998          899999999999999999999999999999999874

>KOG0418|consensus

Probab=100.00  E-value=1.8e-38  Score=219.86  Aligned_cols=119  Identities=34%  Similarity=0.640  Sum_probs=114.7

Q ss_pred             CChHHHHHHHHHHHHHHhCC---CCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90             1 MSGIAIGRLSEERKGWRKDH---PFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF   77 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f   77 (125)
                      ||. +.+||++|++++.+++   ..|+.+....+     |+.+..+.|.||+|||||||+|.++|++|++|||+||+|+|
T Consensus         1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~-----~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F   74 (200)
T KOG0418|consen    1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNE-----NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKF   74 (200)
T ss_pred             Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccC-----ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceee
Confidence            788 9999999999999998   78999998887     99999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            78 EPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        78 ~t~i~HPni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      .|+||||||+..           .|++++||.++|.+||++|..|++.||.+.++|++|
T Consensus        75 ~TkIwHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy  133 (200)
T KOG0418|consen   75 ITKIWHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQY  133 (200)
T ss_pred             eeeeecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence            999999999987           899999999999999999999999999999999886

>KOG0426|consensus

Probab=100.00  E-value=2.8e-38  Score=208.19  Aligned_cols=121  Identities=39%  Similarity=0.778  Sum_probs=116.7

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      |+..|+|||++|+++|-.++++|+.+.|..+.    |++.|.+.|.||++|+|+||+|-.++.||.+||.+||+++|...
T Consensus         1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~Ed----nfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~   76 (165)
T KOG0426|consen    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINED----NFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCE   76 (165)
T ss_pred             CchhHHHHHHHHHHHHccCCCCcceeCCCCcc----ceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecc
Confidence            78899999999999999999999999998763    99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+.+                       .|+|..+++.||+++.+||++||.++++|.+|+.++
T Consensus        77 ~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mW  144 (165)
T KOG0426|consen   77 MFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMW  144 (165)
T ss_pred             cccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHH
Confidence            999999998                       899999999999999999999999999999999864

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=5.5e-38  Score=213.58  Aligned_cols=114  Identities=46%  Similarity=0.888  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCCCC
Q psy90             8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVY   87 (125)
Q Consensus         8 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~   87 (125)
                      ||++|+++++++++.|+.+.+.++.    |+.+|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+|+||||+
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~----~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~   76 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDD----NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID   76 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTT----ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCC----ChheEEEEEeccCccceeccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999988752    999999999999999999999999999999999999999999999999999


Q ss_pred             CC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            88 PS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        88 ~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      .+           .|+|++++.+||.+|+++|.+|+.++|+|.+||++|
T Consensus        77 ~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~  125 (140)
T PF00179_consen   77 ENGRICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELY  125 (140)
T ss_dssp             TTSBBGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHH
T ss_pred             ccccchhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHH
Confidence            76           399999999999999999999999999999999875

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=1.5e-37  Score=211.70  Aligned_cols=114  Identities=46%  Similarity=0.869  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCCC
Q psy90             7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV   86 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni   86 (125)
                      |||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~-----~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV   76 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEE-----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNV   76 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCC-----ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCC
Confidence            7999999999999999999999887     99999999999999999999999999999999999999999999999999


Q ss_pred             CCC----------C-CCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            87 YPS----------D-WKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        87 ~~~----------~-W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +.+          . |+|++++++||.+|+++|.+|+.++|+|.+||++|
T Consensus        77 ~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~  126 (141)
T cd00195          77 DENGKICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLY  126 (141)
T ss_pred             CCCCCCchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            976          4 99999999999999999999999999999999876

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=1.4e-35  Score=202.91  Aligned_cols=115  Identities=47%  Similarity=0.817  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCCC
Q psy90             7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV   86 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni   86 (125)
                      +||++|+++++++++.|+++.+.++.    |+++|+++|.||++|||+||.|.+.|.||++||.+||+|+|.++++||||
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~----~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i   76 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDED----NLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNV   76 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCC----ChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeE
Confidence            59999999999999999999887642    89999999999999999999999999999999999999999999999999


Q ss_pred             CCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            87 YPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        87 ~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +.+           +|+|+++++++|.+|+++|.+|+.++|+|.|||++|
T Consensus        77 ~~~G~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~  126 (145)
T smart00212       77 DSSGEICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLY  126 (145)
T ss_pred             CCCCCEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            987           599999999999999999999999999999999876

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0422|consensus

Probab=100.00  E-value=3.2e-33  Score=185.51  Aligned_cols=116  Identities=30%  Similarity=0.589  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      +.+||+||+.+|+++....+.-...++.    |+..|.+.|. |++-||..|.|+++|.||.+|||+||+|+|.|+||||
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~----nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHp   77 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIEVDEA----NLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHP   77 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhhcccc----cceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccC
Confidence            6899999999999998775543333322    9999999999 8999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||++.           +|+|+.+.++||++|.+++.+|+++.|++.|+|..|
T Consensus        78 NVDe~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey  129 (153)
T KOG0422|consen   78 NVDEKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEY  129 (153)
T ss_pred             CCCCCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHH
Confidence            99998           899999999999999999999999999999999876

>KOG0416|consensus

Probab=99.97  E-value=6e-32  Score=184.80  Aligned_cols=113  Identities=26%  Similarity=0.499  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      ..||+..|+..|.....   .+....+     ++++++|.+.||.+|||+||+++++|.+|++||++.|+|.|+++||||
T Consensus         4 ~~rRid~Dv~KL~~s~y---eV~~ind-----~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHP   75 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLMSDY---EVTIIND-----GMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHP   75 (189)
T ss_pred             cccchhhHHHHHHhcCC---eEEEecC-----cccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCC
Confidence            67899999999986553   4444444     799999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CCCCcCCHHHHH-HHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS-----------DWKPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~-----------~W~p~~tl~~vl-~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+..           .|+|.+.|..|+ .-|-+||..||+.||||.|||.+|
T Consensus        76 NIDe~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~  128 (189)
T KOG0416|consen   76 NIDEASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALY  128 (189)
T ss_pred             CchhccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHH
Confidence            99987           899999999999 577889999999999999999876

>KOG0420|consensus

Probab=99.97  E-value=2.5e-31  Score=182.00  Aligned_cols=118  Identities=28%  Similarity=0.544  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.++-||++|+.++.  -++.++.......++. +..+++++|. |.++.|+||.|.|.+++|+.||++||+|+|+|+||
T Consensus        27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~-~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~  102 (184)
T KOG0420|consen   27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDL-NNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY  102 (184)
T ss_pred             cHHHHHHHhhhhhcc--CCCccccccccCCccc-ccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence            456678888877775  4445554333332222 3336999999 99999999999999999999999999999999999


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhh
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI  124 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~  124 (125)
                      ||||+.+          +|+|+.+|.+|+.+|+.+|.+|+++||||.|||++
T Consensus       103 HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~  154 (184)
T KOG0420|consen  103 HPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAV  154 (184)
T ss_pred             cCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHH
Confidence            9999998          99999999999999999999999999999999985

>KOG0423|consensus

Probab=99.96  E-value=1.7e-30  Score=178.31  Aligned_cols=117  Identities=32%  Similarity=0.619  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      ....|.+.+|++.+...++.||.+.+.++     |.+...+.|.||.||||++|.|++++.+..+||.+||+-.|+|+||
T Consensus         9 p~vik~~~kEl~~l~~~PPdGIKV~~Nee-----D~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIF   83 (223)
T KOG0423|consen    9 PNVIKQLAKELKSLDESPPDGIKVVVNEE-----DFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIF   83 (223)
T ss_pred             hHHHHHHHHHHHhcccCCCCceEEecChH-----HhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeec
Confidence            45788999999999999999999998887     9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhh
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI  124 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~  124 (125)
                      ||||..+          +|+|+.++..||..|.++|..|++++.+|.||.++
T Consensus        84 HPNVaaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkm  135 (223)
T KOG0423|consen   84 HPNVAANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKM  135 (223)
T ss_pred             cCCcccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHH
Confidence            9999998          89999999999999999999999999999999875

>KOG0894|consensus

Probab=99.96  E-value=7.2e-29  Score=175.41  Aligned_cols=102  Identities=33%  Similarity=0.673  Sum_probs=95.2

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC-
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP-   80 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~-   80 (125)
                      +..|.|||+||++.|+++|.+++.+.|..+     |+.+||.+|.||++|||+||.|+.+|.||.+||++||.|+++|+ 
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~-----nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN   77 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVARPNPN-----NILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN   77 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhccCCCcc-----ceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC
Confidence            368999999999999999999999999998     99999999999999999999999999999999999999999886 


Q ss_pred             --------------ccCCCCCCCCCCCcCCHHHHHHHHHHhhcCCC
Q psy90            81 --------------LFHPNVYPSDWKPAITIKQILLGIQDLLNEPN  112 (125)
Q Consensus        81 --------------i~HPni~~~~W~p~~tl~~vl~~i~~ll~~p~  112 (125)
                                    -|||    +.|+|.++|.+||.+|.++|.+-.
T Consensus        78 GRFktntRLCLSiSDfHP----dsWNP~WsVStILtGLlSFM~e~~  119 (244)
T KOG0894|consen   78 GRFKTNTRLCLSISDFHP----DSWNPGWSVSTILTGLLSFMTEDS  119 (244)
T ss_pred             CceecCceEEEeccccCc----CcCCCcccHHHHHHHHHHHHhcCC
Confidence                          2676    489999999999999999998643

>KOG0427|consensus

Probab=99.95  E-value=7.4e-28  Score=158.63  Aligned_cols=112  Identities=30%  Similarity=0.718  Sum_probs=101.7

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      |+..+.+||+||+.+++.+++.|+..... +     |+.+|.+.+.|.+||.|+|.+|.+.++||+.||+..|+|.|..+
T Consensus        12 ls~~at~RLqKEl~e~q~~pP~G~~~~v~-d-----nlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~   85 (161)
T KOG0427|consen   12 LSKIATNRLQKELSEWQNNPPTGFKHRVT-D-----NLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP   85 (161)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcceeecc-c-----chheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence            45678999999999999999999998733 3     99999999999999999999999999999999999999999999


Q ss_pred             c-cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcC-CCCCChhc
Q psy90            81 L-FHPNVYPS----------DWKPAITIKQILLGIQDLLNE-PNIKDPAQ  118 (125)
Q Consensus        81 i-~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~-p~~~~p~n  118 (125)
                      + .||+||.+          .|+|++++.+|.++|.+||++ .....|.+
T Consensus        86 ~P~HPHiYSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~D  135 (161)
T KOG0427|consen   86 APLHPHIYSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPTD  135 (161)
T ss_pred             CCCCCceecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence            7 89999999          899999999999999999996 44444544

>KOG0428|consensus

Probab=99.86  E-value=1.7e-21  Score=140.65  Aligned_cols=98  Identities=31%  Similarity=0.646  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-   81 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-   81 (125)
                      +.+.|||+||.++++ ++...+.+.|.++     |+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|+- 
T Consensus        10 npaVkRlmkEa~El~-~Ptd~yha~plEd-----NlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG   83 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELK-DPTDHYHAQPLED-----NLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG   83 (314)
T ss_pred             CHHHHHHHHHHHHhc-Cchhhhhhccchh-----ceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence            568999999999999 8888889999998     999999999999999999999999999999999999999888861 


Q ss_pred             --------------cCCCCCCCCCCCcCCHHHHHHHHHHhhcC
Q psy90            82 --------------FHPNVYPSDWKPAITIKQILLGIQDLLNE  110 (125)
Q Consensus        82 --------------~HPni~~~~W~p~~tl~~vl~~i~~ll~~  110 (125)
                                    |||    ..|.|+|++.+.|++|..+|-.
T Consensus        84 RFE~nkKiCLSISgyHP----EtWqPSWSiRTALlAlIgFmPt  122 (314)
T KOG0428|consen   84 RFEVNKKICLSISGYHP----ETWQPSWSIRTALLALIGFMPT  122 (314)
T ss_pred             ceeeCceEEEEecCCCc----cccCcchhHHHHHHHHHccccC
Confidence                          566    3899999999999999998864

>KOG0429|consensus

Probab=99.81  E-value=1.8e-19  Score=128.23  Aligned_cols=112  Identities=23%  Similarity=0.463  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCC--CCCeeEecCCccCCC
Q psy90             8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPS--TPPKCKFEPPLFHPN   85 (125)
Q Consensus         8 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~--~pP~v~f~t~i~HPn   85 (125)
                      -|+.|+..+.+++.+|+++.|+-.     |-+.|.++|++ ..++|.||+|+|+|.+|++||.  .-|+|.|.+.++||+
T Consensus        23 ~llAEf~lV~~ekL~gIyviPSya-----n~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~   96 (258)
T KOG0429|consen   23 ALLAEFVLVCREKLDGIYVIPSYA-----NKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPL   96 (258)
T ss_pred             HHHHHHHHHHhccCCceEEccccc-----ccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccc
Confidence            478889999999999999999988     99999999995 5678999999999999999995  479999999999999


Q ss_pred             CCCC-----------CCCC-cCCHHHHHHHHHHhhcCCCCCCh-h-cHHHHhhC
Q psy90            86 VYPS-----------DWKP-AITIKQILLGIQDLLNEPNIKDP-A-QAEAYTIY  125 (125)
Q Consensus        86 i~~~-----------~W~p-~~tl~~vl~~i~~ll~~p~~~~p-~-n~~aa~~y  125 (125)
                      |+..           .|.. ..++.+||..||.+|.+|+.+.+ + |+|||.+|
T Consensus        97 icp~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~  150 (258)
T KOG0429|consen   97 ICPKSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLY  150 (258)
T ss_pred             cCCCccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHH
Confidence            9997           7976 67899999999999999998876 4 99999886

>KOG0896|consensus

Probab=99.57  E-value=9.3e-15  Score=96.97  Aligned_cols=104  Identities=26%  Similarity=0.378  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCC
Q psy90             6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN   85 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn   85 (125)
                      ..||.+|+.+-++--.++..-.-.++.|+ .-+..|..+|.||+.|+||+.+|.++|..-++||..||.|+|.+++--+.
T Consensus         7 nfrlleele~g~kg~g~~~~s~gl~d~~d-mtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~g   85 (138)
T KOG0896|consen    7 NFRLLEELEEGEKGIGDGTVSWGLEDDDD-MTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNG   85 (138)
T ss_pred             chhhhhhhccccccccCceeeccccCCCc-ceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecc
Confidence            35788888888776666665555554332 26789999999999999999999999999999999999999999986666


Q ss_pred             CCCC-------------CCCCcCCHHHHHHHHHHhhcC
Q psy90            86 VYPS-------------DWKPAITIKQILLGIQDLLNE  110 (125)
Q Consensus        86 i~~~-------------~W~p~~tl~~vl~~i~~ll~~  110 (125)
                      |...             +|.-.|+++.+|..+.-++..
T Consensus        86 vn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~  123 (138)
T KOG0896|consen   86 VNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMS  123 (138)
T ss_pred             cccCCCccCccccchhhcccccchhhHHHHhhhHHHHH
Confidence            5554             899999999999999976654

>KOG0895|consensus

Probab=99.52  E-value=2.4e-14  Score=120.08  Aligned_cols=101  Identities=28%  Similarity=0.537  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC--cc
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP--LF   82 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~   82 (125)
                      ..+..+.|++.|..+.+.|+.+...++     .+....+.|.|+++|||++|.|.|.+.||++||..||.+...+.  .+
T Consensus       852 ~~~~~~~~~~~~~~~~~~~~~vr~~e~-----r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~  926 (1101)
T KOG0895|consen  852 WAKKVQTEWKILPLSLPSGIFVRAYED-----RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRL  926 (1101)
T ss_pred             HHHHHHHHHHhhhccCCCceEEEechH-----HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceee
Confidence            445567788888888999999998887     77778899999999999999999999999999999999999875  58


Q ss_pred             CCCCCCC-----------------CCCCcCCHHHHHHHHHHhhcC
Q psy90            83 HPNVYPS-----------------DWKPAITIKQILLGIQDLLNE  110 (125)
Q Consensus        83 HPni~~~-----------------~W~p~~tl~~vl~~i~~ll~~  110 (125)
                      +||.|.+                 .|+|+.++.+||.+||.|.-+
T Consensus       927 npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~  971 (1101)
T KOG0895|consen  927 NPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN  971 (1101)
T ss_pred             CcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence            9999998                 699999999999999998765

>KOG0895|consensus

Probab=99.48  E-value=2.3e-13  Score=114.31  Aligned_cols=104  Identities=29%  Similarity=0.541  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC--
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP--   80 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~--   80 (125)
                      ....+|+++|++.+.++.++|+.+.+.+.     .+....+.|.||.+|||++|.|.|.|.||..||..||.++++|.  
T Consensus       281 ~~~skrv~ke~~llskdlpEgifvrp~e~-----RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~  355 (1101)
T KOG0895|consen  281 KNWSKKVAKELKLLSKDLPEGIFVRPDEG-----RMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGG  355 (1101)
T ss_pred             hhhHHHHHHHhhhhcccCCCCcccccccc-----ccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccc
Confidence            45689999999999999999999998887     99999999999999999999999999999999999999999987  


Q ss_pred             -ccCCCCCCC-----------------CCCCc-CCHHHHHHHHHHhhcCC
Q psy90            81 -LFHPNVYPS-----------------DWKPA-ITIKQILLGIQDLLNEP  111 (125)
Q Consensus        81 -i~HPni~~~-----------------~W~p~-~tl~~vl~~i~~ll~~p  111 (125)
                       .+.||.|.+                 .|+|. .++.++|..||.+..+-
T Consensus       356 ~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e  405 (1101)
T KOG0895|consen  356 VRLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE  405 (1101)
T ss_pred             eeecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence             589999888                 69997 99999999999987753

>KOG0897|consensus

Probab=97.78  E-value=5.2e-05  Score=49.41  Aligned_cols=59  Identities=25%  Similarity=0.446  Sum_probs=46.0

Q ss_pred             EEEEEEeCCCCCCCCCeeEecCCccCCCCCCC----------------CCCCcCCHHHHHHHHHHhhcCCC--CCChhcH
Q psy90            58 YKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------------DWKPAITIKQILLGIQDLLNEPN--IKDPAQA  119 (125)
Q Consensus        58 f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~----------------~W~p~~tl~~vl~~i~~ll~~p~--~~~p~n~  119 (125)
                      ..+.+.|+++||+.||.++...    |.++..                +|+.+|+++.++++|...+-.-.  .+.|++.
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~----p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k   88 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVK----PLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK   88 (122)
T ss_pred             eEeeeecccCCCCCCCcceeee----ecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence            5677899999999999998664    445544                89999999999999999887633  4455544


Q ss_pred             H
Q psy90           120 E  120 (125)
Q Consensus       120 ~  120 (125)
                      +
T Consensus        89 ~   89 (122)
T KOG0897|consen   89 S   89 (122)
T ss_pred             h
Confidence            3

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.59  E-value=0.0003  Score=46.78  Aligned_cols=70  Identities=20%  Similarity=0.502  Sum_probs=46.2

Q ss_pred             CcceeEEEecCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeEecCCc-----cCCCCCCC---------CCCC-cCCHHH
Q psy90            37 NLMNWECSIPGKKGTPWESGSYK--LRMIFKDDYPSTPPKCKFEPPL-----FHPNVYPS---------DWKP-AITIKQ   99 (125)
Q Consensus        37 ~~~~w~~~i~Gp~~t~y~gg~f~--~~i~fp~~yP~~pP~v~f~t~i-----~HPni~~~---------~W~p-~~tl~~   99 (125)
                      .+....++|.    -.|+|..|.  +.|-+|.+||..||.+......     -+.+|+.+         +|++ ..+|.+
T Consensus        31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~  106 (121)
T PF05743_consen   31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVD  106 (121)
T ss_dssp             EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHH
T ss_pred             eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHH
Confidence            3444455553    248888886  5566899999999999775331     24488887         8988 899999


Q ss_pred             HHHHHHHhhcC
Q psy90           100 ILLGIQDLLNE  110 (125)
Q Consensus       100 vl~~i~~ll~~  110 (125)
                      ++..+...|.+
T Consensus       107 lv~~l~~~F~~  117 (121)
T PF05743_consen  107 LVQELQAVFSE  117 (121)
T ss_dssp             HHHHHHHCCCH
T ss_pred             HHHHHHHHHhH
Confidence            99988887763

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=97.42  E-value=0.00042  Score=46.63  Aligned_cols=57  Identities=33%  Similarity=0.681  Sum_probs=49.8

Q ss_pred             CCCEEEEEEEeCCCCCCCCCeeEecCCc---cCCCCCCC-------------CCCCcCCHHHHHHHHHHhhcC
Q psy90            54 ESGSYKLRMIFKDDYPSTPPKCKFEPPL---FHPNVYPS-------------DWKPAITIKQILLGIQDLLNE  110 (125)
Q Consensus        54 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~HPni~~~-------------~W~p~~tl~~vl~~i~~ll~~  110 (125)
                      .|+.+.+.|.+|+.||..||.|....+.   +=|||+.+             .|.|.-++.++|.....+|.+
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~  106 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED  106 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999988654   57788777             689999999999988888884

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.72  E-value=0.0077  Score=38.45  Aligned_cols=70  Identities=20%  Similarity=0.244  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEec--CCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIP--GKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~--Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      ..+...|+..|+..-+... ......     ....+.+.+.  ....+.-....+.+.+.||++||..+|.|...+..
T Consensus         3 ~e~~~~EieaL~sIy~~~~-~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen    3 EEQQEEEIEALQSIYPDDF-IEIESK-----SPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             HHHHHHHHHHHHHHSSSSE-SSSTSS-----SSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             HHHHHHHHHHHHHHcCCCc-cccccC-----CCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            4577888888886655544 111111     4455666662  12333445568999999999999999999877554

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=96.28  E-value=0.036  Score=35.05  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             CCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90            55 SGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus        55 gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      .-.+.+.+.||.+||..+|.|.+.+.
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEECC
Confidence            35588999999999999999988764

>KOG2391|consensus

Probab=96.19  E-value=0.064  Score=41.44  Aligned_cols=72  Identities=25%  Similarity=0.598  Sum_probs=54.3

Q ss_pred             CcceeEEEecCCCCCCCCCCEEEEEEE--eCCCCCCCCCeeEecCC-----ccCCCCCCC---------CCCC-cCCHHH
Q psy90            37 NLMNWECSIPGKKGTPWESGSYKLRMI--FKDDYPSTPPKCKFEPP-----LFHPNVYPS---------DWKP-AITIKQ   99 (125)
Q Consensus        37 ~~~~w~~~i~Gp~~t~y~gg~f~~~i~--fp~~yP~~pP~v~f~t~-----i~HPni~~~---------~W~p-~~tl~~   99 (125)
                      +++....+|    -.+|.|.+|.+=|.  +.+.||+.||.+.....     --|-+|+.+         +|.+ ++.|..
T Consensus        51 ~ll~~~GTI----p~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~W~~pssdLv~  126 (365)
T KOG2391|consen   51 LLLQLDGTI----PVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHNWDPPSSDLVG  126 (365)
T ss_pred             chhhccCcc----cccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhccCCCccchHHH
Confidence            444444444    35788988886655  69999999998865422     138899988         8977 888999


Q ss_pred             HHHHHHHhhcCCC
Q psy90           100 ILLGIQDLLNEPN  112 (125)
Q Consensus       100 vl~~i~~ll~~p~  112 (125)
                      ++.-+.+.|.++.
T Consensus       127 Liq~l~a~f~~~p  139 (365)
T KOG2391|consen  127 LIQELIAAFSEDP  139 (365)
T ss_pred             HHHHHHHHhcCCC
Confidence            9999999988744

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=94.68  E-value=0.57  Score=31.20  Aligned_cols=72  Identities=18%  Similarity=0.362  Sum_probs=48.9

Q ss_pred             CcceeEEEecC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc-------CCCCCCC-----------------C
Q psy90            37 NLMNWECSIPG--KKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF-------HPNVYPS-----------------D   90 (125)
Q Consensus        37 ~~~~w~~~i~G--p~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~-------HPni~~~-----------------~   90 (125)
                      .-..|.+ |.|  -+.+.|.+..-.+-|.+|..||..+|..-+..+-.       .||=...                 .
T Consensus        22 g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~  100 (122)
T PF14462_consen   22 GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNP  100 (122)
T ss_pred             CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCC
Confidence            3445644 554  45666999999999999999999988766654421       2211111                 6


Q ss_pred             CCC-cCCHHHHHHHHHHhhc
Q psy90            91 WKP-AITIKQILLGIQDLLN  109 (125)
Q Consensus        91 W~p-~~tl~~vl~~i~~ll~  109 (125)
                      |.| .-+|.+.|..|...|.
T Consensus       101 W~P~~D~l~T~l~~v~~~L~  120 (122)
T PF14462_consen  101 WRPGVDDLWTHLARVEHALA  120 (122)
T ss_pred             CCCCCCcHHHHHHHHHHHHh
Confidence            888 4578888888887664

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=94.17  E-value=0.027  Score=38.35  Aligned_cols=64  Identities=20%  Similarity=0.205  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHh-------CCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC--EEEEEEEeCCCCCCCCCe
Q psy90             4 IAIGRLSEERKGWRK-------DHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG--SYKLRMIFKDDYPSTPPK   74 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg--~f~~~i~fp~~yP~~pP~   74 (125)
                      ....||..|++.|-+       +....+.+....      +=++|...-.-    .|+--  .|.+++.+|..||..||.
T Consensus        24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~------~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pE   93 (161)
T PF08694_consen   24 LWVQRLKEEYQALIKYVENNKENDNDWFRLESNK------EGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPE   93 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE-T------TSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS---
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeEEeccCC------CCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcc
Confidence            457899999998753       223344444222      33455443320    11222  355667779999999999


Q ss_pred             eEe
Q psy90            75 CKF   77 (125)
Q Consensus        75 v~f   77 (125)
                      |..
T Consensus        94 i~l   96 (161)
T PF08694_consen   94 IAL   96 (161)
T ss_dssp             -B-
T ss_pred             eec
Confidence            976

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=92.87  E-value=0.2  Score=34.91  Aligned_cols=51  Identities=24%  Similarity=0.481  Sum_probs=40.3

Q ss_pred             EEEEeCCCCCCCCCeeEecCCcc---CCCCCCC----------------CCCCcCCHHHHHHHHHHhhcC
Q psy90            60 LRMIFKDDYPSTPPKCKFEPPLF---HPNVYPS----------------DWKPAITIKQILLGIQDLLNE  110 (125)
Q Consensus        60 ~~i~fp~~yP~~pP~v~f~t~i~---HPni~~~----------------~W~p~~tl~~vl~~i~~ll~~  110 (125)
                      +.|.|+.+||..+|.+.+..+.|   +||+...                +|.++.|++.+|..|..-|..
T Consensus        57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~  126 (162)
T PF14457_consen   57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD  126 (162)
T ss_pred             EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence            56899999999999877765533   3555444                799999999999999988764

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=92.68  E-value=0.26  Score=37.54  Aligned_cols=86  Identities=22%  Similarity=0.423  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-cC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-FH   83 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~H   83 (125)
                      ..++|.+|+.++..+....+..   +.     ++...++.+..   +   .....++|.++.+||.++|.+..--++ +.
T Consensus       100 ~ys~ll~EIe~IGW~kl~~i~~---d~-----~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P~~~~  165 (291)
T PF09765_consen  100 YYSNLLKEIEAIGWDKLVQIQF---DD-----DLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLPIPFS  165 (291)
T ss_dssp             GC-CHHHHHHHHHCGCCEEEEE----C-----CCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TTS-HH
T ss_pred             HHHHHHHHHHHhccccceEEec---CC-----CccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCCcchh
Confidence            3567889999888665422221   22     78888888872   1   256889999999999999976443332 11


Q ss_pred             CCCCCCCCCC-cCCHHHHHHHHHHhhc
Q psy90            84 PNVYPSDWKP-AITIKQILLGIQDLLN  109 (125)
Q Consensus        84 Pni~~~~W~p-~~tl~~vl~~i~~ll~  109 (125)
                      .     .|.+ ..++.+++...+..+.
T Consensus       166 ~-----~w~~~~ssL~~v~~qF~~~le  187 (291)
T PF09765_consen  166 L-----SWSPSQSSLKDVVQQFQEALE  187 (291)
T ss_dssp             H-----HHHCHT-SHHHHHHHHHHHHH
T ss_pred             h-----hhcccccCHHHHHHHHHHHHH
Confidence            1     5888 7889888877666554

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG3357|consensus

Probab=90.56  E-value=0.58  Score=31.48  Aligned_cols=63  Identities=24%  Similarity=0.356  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC----------EEEEEEEeCCCCCCCCC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG----------SYKLRMIFKDDYPSTPP   73 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~yP~~pP   73 (125)
                      ....||..|++.|...-..      ..+     +-..|.-.=..++||-|-|.          .|.+++.+|-.||-.+|
T Consensus        27 ~wvqrlkeey~sli~yvqn------nk~-----~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tap   95 (167)
T KOG3357|consen   27 LWVQRLKEEYQSLIAYVQN------NKS-----NDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAP   95 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHh------Ccc-----cCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCc
Confidence            3578999999988632110      011     22223222234677777663          35566777999999999


Q ss_pred             eeEe
Q psy90            74 KCKF   77 (125)
Q Consensus        74 ~v~f   77 (125)
                      .|..
T Consensus        96 eial   99 (167)
T KOG3357|consen   96 EIAL   99 (167)
T ss_pred             cccc
Confidence            8864

>KOG4018|consensus

Probab=87.99  E-value=2.4  Score=30.81  Aligned_cols=62  Identities=19%  Similarity=0.272  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhCCCCCe-EEeecCCCCCCCCcceeEEEecCCCCC--CCCCCEEEEEEEeCCCCCCCCCeeE
Q psy90             7 GRLSEERKGWRKDHPFGF-VAKPAKNPDGSLNLMNWECSIPGKKGT--PWESGSYKLRMIFKDDYPSTPPKCK   76 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~Gp~~t--~y~gg~f~~~i~fp~~yP~~pP~v~   76 (125)
                      .-...|+..|...-+... .+.-.       +...+.+.|.--.+.  -|.| .+.+.++++.+||..+|-+.
T Consensus         5 EeQe~E~EaLeSIY~de~~~i~~~-------~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~   69 (215)
T KOG4018|consen    5 EEQEEELEALESIYPDEFKHINSE-------DPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIE   69 (215)
T ss_pred             HHHHHHHHHHHHhccchhhhhhcc-------CCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCccee
Confidence            445567777765544333 22111       333355666521111  1223 78999999999999999993

>KOG0309|consensus

Probab=87.59  E-value=3  Score=35.93  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC-EEEEEEEeCCCCCCC-CCeeEecCC
Q psy90             7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG-SYKLRMIFKDDYPST-PPKCKFEPP   80 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg-~f~~~i~fp~~yP~~-pP~v~f~t~   80 (125)
                      .-|..|+.-+-.. ...+.+...+-     .-+.-.+.+.||-... .|- ..++.|.||.+||.. +|+++|..+
T Consensus       423 QnLgeE~S~Ig~k-~~nV~fEkidv-----a~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~  491 (1081)
T KOG0309|consen  423 QNLGEEFSLIGVK-IRNVNFEKIDV-----ADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP  491 (1081)
T ss_pred             hhHHhHHhHhhcc-ccccceEeecc-----ccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence            3455565555422 23333332322     3345566777654433 333 346788999999986 799999754

>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins

Probab=83.01  E-value=5.2  Score=31.08  Aligned_cols=55  Identities=24%  Similarity=0.548  Sum_probs=40.5

Q ss_pred             CCCCCEEEEEEEeCCCCCCCCCeeEec-CCccCCCCCCC----CCCCc--CCHHHHHHHHHH
Q psy90            52 PWESGSYKLRMIFKDDYPSTPPKCKFE-PPLFHPNVYPS----DWKPA--ITIKQILLGIQD  106 (125)
Q Consensus        52 ~y~gg~f~~~i~fp~~yP~~pP~v~f~-t~i~HPni~~~----~W~p~--~tl~~vl~~i~~  106 (125)
                      ||.|...+-+|.|...+|..||-+.|- ..-|+|....-    +|++.  -.+..++..+..
T Consensus        61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~l~~L~~Wd~~dp~~Ll~li~EL~~  122 (333)
T PF06113_consen   61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSKLPSLVNWDPSDPNCLLNLISELRQ  122 (333)
T ss_pred             eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhhcchhhcCCCCCchHHHHHHHHHHH
Confidence            588999999999999999999999996 33488853332    89774  344455555443

BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	125
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		2e-61
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		3e-61
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		3e-61
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		3e-61
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		3e-61
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		4e-61
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		4e-61
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		5e-61
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		1e-60
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		2e-60
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		2e-60
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		3e-60
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		3e-45
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		6e-37
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		6e-37
1jas_A	152	Hsubc2b Length = 152		8e-20
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		2e-18
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		3e-18
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-17
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		2e-17
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		3e-16
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		6e-15
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		6e-15
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		9e-15
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		1e-14
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		2e-14
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-14
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		2e-14
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		3e-14
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		3e-14
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		4e-14
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		4e-14
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		4e-14
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-14
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		4e-14
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		5e-14
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-14
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		5e-14
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		6e-14
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		6e-14
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		6e-14
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		8e-14
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		1e-13
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		2e-13
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-13
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		2e-13
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		2e-13
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		2e-13
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-13
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		3e-13
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		3e-13
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		4e-13
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		4e-13
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		6e-13
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		7e-13
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		8e-13
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		9e-13
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		9e-13
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		1e-12
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		1e-12
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		1e-12
3jvz_A	146	E2~ubiquitin-Hect Length = 146		1e-12
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-12
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		3e-12
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		3e-12
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		9e-12
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		2e-11
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		2e-11
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		2e-11
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		2e-11
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		2e-11
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		4e-11
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		7e-11
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		1e-10
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		2e-10
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		8e-10
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		3e-09
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		3e-09
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		5e-09
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		6e-09
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-08
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		6e-08
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-07
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-07
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		3e-07
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		4e-07
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		5e-07
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		6e-07
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		1e-05
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		1e-05
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		4e-05
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		5e-05
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		5e-05
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		5e-05
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		5e-05
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		6e-05
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		6e-05
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		6e-05
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		7e-05
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		8e-05
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		8e-05
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		9e-05
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		2e-04
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-04

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score =  229 bits (585), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score =  229 bits (585), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score =  229 bits (584), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 1   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 60
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 61  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 121 NEPNIQDPAQAEAYTIY 137

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score =  229 bits (584), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 2   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 61
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 62  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 121
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 122 NEPNIQDPAQAEAYTIY 138

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score =  229 bits (584), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 3   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 63  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 123 NEPNIQDPAQAEAYTIY 139

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score =  229 bits (583), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 3   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 62
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 63  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 122
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 123 NEPNIQDPAQAEAYTIY 139

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score =  229 bits (583), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 124 NEPNIQDPAQAEAYTIY 140

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score =  228 bits (582), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 119/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 6   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 65
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 66  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 125
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 126 NEPNIQDPAQAEAYTIY 142

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score =  227 bits (578), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHP VYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 124 NEPNIQDPAQAEAYTIY 140

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score =  227 bits (578), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+ PAQAEAYTIY
Sbjct: 124 NEPNIQSPAQAEAYTIY 140

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score =  226 bits (576), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+ PAQAEAYTIY
Sbjct: 124 NEPNIQAPAQAEAYTIY 140

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score =  226 bits (576), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNV PS            DW+PAITIKQILLGIQ+LL
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+DPAQAEAYTIY
Sbjct: 124 NEPNIQDPAQAEAYTIY 140

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score =  176 bits (446), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 12/136 (8%)
Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S +   RL EERK WR+DHPFGF AKP K+ DG L+LMNW+  IPGK  T WE G YKL 
Sbjct: 8   SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLLN 109
           M F ++YP+ PPKC+F PPLFHPNVYPS             WKPAITIKQILLGIQDLL+
Sbjct: 68  MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 127
Query: 110 EPNIKDPAQAEAYTIY 125
           +PNI  PAQ EAYT++
Sbjct: 128 DPNIASPAQTEAYTMF 143

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score =  148 bits (374), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS + + RL EERK WRKDHPFGF AKP K  DGS++L  WE  IPGK+GT W  G Y +
Sbjct: 3   MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 62
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
            + + ++YPS PPK KF    +HPNVYPS            DW+PAIT+KQI+LG+QDLL
Sbjct: 63  TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 122
Query: 109 NEPNIKDPAQAEAYTIY 125
           + PN   PAQ  A+  +
Sbjct: 123 DSPNPNSPAQEPAWRSF 139

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score =  148 bits (374), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 12/137 (8%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS + + RL EERK WRKDHPFGF AKP K  DGS++L  WE  IPGK+GT W  G Y +
Sbjct: 1   MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
            + + ++YPS PPK KF    +HPNVYPS            DW+PAIT+KQI+LG+QDLL
Sbjct: 61  TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120
Query: 109 NEPNIKDPAQAEAYTIY 125
           + PN   PAQ  A+  +
Sbjct: 121 DSPNPNSPAQEPAWRSF 137

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 92.0 bits (227), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 72/135 (53%), Gaps = 15/135 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS  A  RL  + K  ++D P G    P++N     N+M W   I G +GTP+E G++KL
Sbjct: 1   MSTPARRRLMRDFKRLQEDPPVGVSGAPSEN-----NIMQWNAVIFGPEGTPFEDGTFKL 55
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
            + F ++YP+ PP  +F   +FHPNVY           + W P   +  IL  IQ LL+E
Sbjct: 56  VIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDE 115
Query: 111 PNIKDPAQAEAYTIY 125
           PN   PA ++A  +Y
Sbjct: 116 PNPNSPANSQAAQLY 130

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS  A  RL  + K  ++D P G    P  N     N+M W   I G   TPW+ G++KL
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKL 55
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
            + F +DYP+ PP  +F   +FHPN+Y           + W P   +  IL  IQ LL +
Sbjct: 56  SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115
Query: 111 PNIKDPAQAEAYTIY 125
           PN   PA +EA  +Y
Sbjct: 116 PNPNSPANSEAARMY 130

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 69/135 (51%), Gaps = 15/135 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS  A  RL  + K  ++D P G  A P   PD   N+M W   I G   TP+E G+++L
Sbjct: 1   MSTPARRRLMRDFKRMKEDAPPGVSASPL--PD---NVMVWNAMIIGPADTPYEDGTFRL 55
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
            + F ++YP+ PP  KF   +FHPNVY           + W P   +  IL  IQ L N+
Sbjct: 56  LLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFND 115
Query: 111 PNIKDPAQAEAYTIY 125
           PN   PA  EA T++
Sbjct: 116 PNPASPANVEAATLF 130

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL  + K  ++D P G    P ++     N++ WE  I G + TP+E G++KL + F ++
Sbjct: 8   RLMRDFKKLQEDPPAGVSGAPTED-----NILTWEAIIFGPQETPFEDGTFKLSLEFTEE 62
Query: 68  YPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP+ PP  KF   +FHPNVY           + W P   +  IL  IQ LL+EPN   PA
Sbjct: 63  YPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPA 122
Query: 118 QAEAYTIY 125
            + A  +Y
Sbjct: 123 NSLAAQLY 130

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 15/128 (11%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL  + K  ++D P G    P ++     N++ WE  I G + TP+E G++KL + F ++
Sbjct: 11  RLMRDFKKLQEDPPAGVSGAPTED-----NILTWEAIIFGPQETPFEDGTFKLSLEFTEE 65
Query: 68  YPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP+ PP  KF   +FHPNVY           + W P   +  IL  IQ LL+EPN   PA
Sbjct: 66  YPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPA 125
Query: 118 QAEAYTIY 125
            + A  +Y
Sbjct: 126 NSLAAQLY 133

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS  A  RL +E +   KD P G VA     P    N+  W+C I G   TP+  G +  
Sbjct: 1   MSKTAQKRLLKELQQLIKDSPPGIVA----GPKSENNIFIWDCLIQGPPDTPYADGVFNA 56
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITI 97
           ++ F  DYP +PPK  F P + HPN+YP+                        W P  ++
Sbjct: 57  KLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSV 116
Query: 98  KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           ++ILL +  +L+EPNI+  A  +A  ++
Sbjct: 117 EKILLSVMSMLSEPNIESGANIDACILW 144

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ +A+ R+++E     +D P    A P  +     ++ +W+ +I G   +P++ G + L
Sbjct: 8   MNSMALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL 62
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
            + F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +
Sbjct: 63  TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 122
Query: 111 PNIKDPAQAEAYTIY 125
           PN  DP   E   IY
Sbjct: 123 PNPDDPLVPEIARIY 137

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M  +A+ R+ +E +  ++D P    A P  +     +L +W+ +I G   +P++ G + L
Sbjct: 3   MGSMALKRIQKELQDLQRDPPAQCSAGPVGD-----DLFHWQATIMGPSDSPYQGGVFFL 57
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
            + F  DYP  PPK  F   ++HPN          +  S W PA+T+ ++LL I  LL +
Sbjct: 58  TIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCD 117
Query: 111 PNIKDPAQAEAYTIY 125
           PN  DP   +   IY
Sbjct: 118 PNPDDPLVPDIAHIY 132

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 15/135 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L
Sbjct: 8   MNSMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL 62
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
            + F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +
Sbjct: 63  TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 122
Query: 111 PNIKDPAQAEAYTIY 125
           PN  DP   E   IY
Sbjct: 123 PNPDDPLVPEIARIY 137

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M  +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L
Sbjct: 3   MGSMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL 57
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
            + F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +
Sbjct: 58  TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 117
Query: 111 PNIKDPAQAEAYTIY 125
           PN  DP   E   IY
Sbjct: 118 PNPDDPLVPEIARIY 132

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
           N   W   I G +GTP+E G + L +   +DYP  PPK KF   ++HPN           
Sbjct: 51  NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 86  VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           V  ++W PA+TI+  LL IQ LL++P   DP  AE   +Y
Sbjct: 111 VLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY 150

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
           G A+ R+++E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 2   GSALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 117 PDDPLVPEIARIY 129

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S +A+ R+ +E +   +D P    A P  +     +L +W+ +I G   +P++ G + L 
Sbjct: 2   SHMALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLT 56
Query: 62  MIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEP 111
           + F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +P
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDP 116
Query: 112 NIKDPAQAEAYTIY 125
           N  DP   E   IY
Sbjct: 117 NPDDPLVPEIARIY 130

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
           A+ R+++E     KD P    A P  +     ++ +W+ +I G + +P+  G + L + F
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGD-----DMFHWQATIMGPEDSPYSGGVFFLNIHF 76
Query: 65  KDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIK 114
             DYP  PPK  F   ++HPN          +    W PA+TI ++LL I  LL +PN  
Sbjct: 77  PSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPD 136
Query: 115 DPAQAEAYTIY 125
           DP   E   +Y
Sbjct: 137 DPLVPEIAHLY 147

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 15/132 (11%)
Query: 4   IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
           +A+ R++ E     KD P    A P  +     +L +W+ +I G   +P+  G + L + 
Sbjct: 1   MALKRINRELADLGKDPPSSSSAGPVGD-----DLFHWQATIMGPADSPYAGGVFFLSIH 55
Query: 64  FKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNI 113
           F  DYP  PPK  F   ++HPN+  +           W PA+TI ++LL I  LL +PN 
Sbjct: 56  FPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPNP 115
Query: 114 KDPAQAEAYTIY 125
            DP   E   +Y
Sbjct: 116 DDPLVPEIAHVY 127

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 4   IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
           +A+ R+++E     +D P    A P  +     ++ +W+ +I G   +P++ G + L + 
Sbjct: 9   MALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIH 63
Query: 64  FKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNI 113
           F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN 
Sbjct: 64  FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 123
Query: 114 KDPAQAEAYTIY 125
            DP   E   IY
Sbjct: 124 DDPLVPEIARIY 135

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 15/132 (11%)
Query: 4   IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
           +A+ R+++E     +D P    A P  +     ++ +W+ +I G   +P++ G + L + 
Sbjct: 1   MALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIH 55
Query: 64  FKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNI 113
           F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN 
Sbjct: 56  FPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNP 115
Query: 114 KDPAQAEAYTIY 125
            DP   E   IY
Sbjct: 116 DDPLVPEIARIY 127

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 117 PDDPLVPEIARIY 129

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 18  SMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 73  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 133 PDDPLVPEIARIY 145

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63  IFKDDYPSTPPKCKFEPPLFHPNV----------YPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN+            S W PA+TI ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 117 PDDPLVPEIARIY 129

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 3   SMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 57
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 58  HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPN 117
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 118 PDDPLVPEIARIY 130

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 18  SMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 73  HFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPN 132
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 133 PDDPLVPEIARIY 145

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 2   SMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 117 PDDPLVPEIARIY 129

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 4   IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
           +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L + 
Sbjct: 1   MALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIH 55
Query: 64  FKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNI 113
           F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN 
Sbjct: 56  FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115
Query: 114 KDPAQAEAYTIY 125
            DP   E   IY
Sbjct: 116 DDPLVPEIARIY 127

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 15/131 (11%)
Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
           A+ R+++E     +D P    A P  +     ++ +W+ +I G   +P++ G + L + F
Sbjct: 1   ALKRINKELSDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIHF 55
Query: 65  KDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIK 114
             DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN  
Sbjct: 56  PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPD 115
Query: 115 DPAQAEAYTIY 125
           DP   E   IY
Sbjct: 116 DPLVPEIARIY 126

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 117 PDDPLVPEIARIY 129

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A+ +  P G  ++ +W+ +I G   +P++ G + L +
Sbjct: 2   AMALKRIHKELNDLARDPP----AQCSAGPVGD-DMFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 117 PDDPLVPEIARIY 129

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 32  PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPS-- 89
           PDG  NL  W  ++ G K T +ES  YKL + F  DYP  PP  KF  P +HPNV  S  
Sbjct: 33  PDGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN 91
Query: 90  --------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
                   +W  +  ++ ILL +Q LL EPN   P  A+A
Sbjct: 92  ICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQA 131

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+G A+ RL  E K    + P G VA P        N   WE  I G + T +E G +  
Sbjct: 6   MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPA 61
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------------------WKPAITI 97
            + F  DYP +PPK +F   +FHPN+YP                         W P  ++
Sbjct: 62  ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 121
Query: 98  KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           ++ILL +  +L EPN +  A  +A  ++
Sbjct: 122 EKILLSVVSMLAEPNDESGANVDASKMW 149

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +  G   +P++ G + L +
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATAMGPNDSPYQGGVFFLTI 56
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+TI ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 117 PDDPLVPEIARIY 129

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+G A+ RL  E K    + P G VA P        N   WE  I G + T +E G +  
Sbjct: 4   MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPA 59
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------------------WKPAITI 97
            + F  DYP +PPK +F   +FHPN+YP                         W P  ++
Sbjct: 60  ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 119
Query: 98  KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           ++ILL +  +L EPN +  A  +A  ++
Sbjct: 120 EKILLSVVSMLAEPNDESGANVDASKMW 147

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 27/148 (18%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+G A+ RL  E K    + P G VA P        N   WE  I G + T +E G +  
Sbjct: 3   MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPA 58
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------------------WKPAITI 97
            + F  DYP +PPK +F   +FHPN+YP                         W P  ++
Sbjct: 59  ILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSV 118
Query: 98  KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           ++ILL +  +L EPN +  A  +A  ++
Sbjct: 119 EKILLSVVSMLAEPNDESGANVDASKMW 146

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 4   IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
           +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L + 
Sbjct: 1   MALKRIHKELNDLARDPPAQCRAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIH 55
Query: 64  FKDDYPSTPPKCKFEPPLFHP----------NVYPSDWKPAITIKQILLGIQDLLNEPNI 113
           F  DYP  PPK  F   ++HP          ++  S W PA+TI ++LL I  LL +PN 
Sbjct: 56  FPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNP 115
Query: 114 KDPAQAEAYTIY 125
            DP   E   IY
Sbjct: 116 DDPLVPEIARIY 127

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+++E +    + P G +A P        N  ++   I G  GTP+E G+YKL +   + 
Sbjct: 5   RITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDGTPYEGGTYKLELFLPEQ 59
Query: 68  YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP  PPK +F   ++HPN          +    W PA+ I+ +LL IQ LL+ P   DP 
Sbjct: 60  YPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 118 QAEA 121
            ++ 
Sbjct: 120 DSKV 123

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 15/135 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M  +A+ R+ +E    ++D P    A P  +     +L +W+ +I G   + ++ G + L
Sbjct: 4   MLEMALKRIQKELSDLQRDPPAHCSAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFL 58
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNE 110
            + F  DYP  PPK  F   ++HPN          +  S W PA+T+ ++LL I  LL +
Sbjct: 59  TVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCD 118
Query: 111 PNIKDPAQAEAYTIY 125
           PN  DP   +   IY
Sbjct: 119 PNPDDPLVPDIAQIY 133

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+++E +    + P G +A P        N  ++   I G  GTP+E G+YKL +   + 
Sbjct: 5   RITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDGTPYEGGTYKLELFLPEQ 59
Query: 68  YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP  PPK +F   ++HPN          +    W PA+ I+ +LL IQ LL+ P   DP 
Sbjct: 60  YPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119
Query: 118 QAEA 121
            ++ 
Sbjct: 120 DSKV 123

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E    ++D P    A P  +     +L +W+ +I G   + ++ G + L +
Sbjct: 2   AMALKRIQKELSDLQRDPPAHCSAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFLTV 56
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+T+ ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 116
Query: 113 IKDPAQAEAYTIY 125
             DP   +   IY
Sbjct: 117 PDDPLVPDIAQIY 129

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E    ++D P    A P  +     +L +W+ +I G   + ++ G + L +
Sbjct: 18  SMALKRIQKELSDLQRDPPAHCSAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFLTV 72
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+T+ ++LL I  LL +PN
Sbjct: 73  HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 132
Query: 113 IKDPAQAEAYTIY 125
             DP   +   IY
Sbjct: 133 PDDPLVPDIAQIY 145

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E    ++D P    A P  +     +L +W+ +I G   + ++ G + L +
Sbjct: 6   SMALKRIQKELSDLQRDPPAHCRAGPVGD-----DLFHWQATIMGPPDSAYQGGVFFLTV 60
Query: 63  IFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN          +  S W PA+T+ ++LL I  LL +PN
Sbjct: 61  HFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPN 120
Query: 113 IKDPAQAEAYTIY 125
             DP   +   IY
Sbjct: 121 PDDPLVPDIAQIY 133

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 12  ERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPST 71
           E KG +++   GF        D    L NWE +I G   T +E G +K R+ F  DYP +
Sbjct: 15  ELKGLQEEPVEGFRVTLVDEGD----LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYS 70
Query: 72  PPKCKFEPPLFHPNVY----------------------PSD-WKPAITIKQILLGIQDLL 108
           PP  +F   ++HPN+Y                      PS+ W P   ++ ILL +  LL
Sbjct: 71  PPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 130
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPN   PA  +A  +Y
Sbjct: 131 NEPNTFSPANVDASVMY 147

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 27/147 (18%)
Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           +G A+ RL  E K    + P G VA P        N   WE  I G + T +E G +   
Sbjct: 1   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPAI 56
Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------------------WKPAITIK 98
           + F  DYP +PPK +F   +FHPN+YP                         W P  +++
Sbjct: 57  LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 116
Query: 99  QILLGIQDLLNEPNIKDPAQAEAYTIY 125
           +ILL +  +L EPN +  A  +A  ++
Sbjct: 117 KILLSVVSMLAEPNDESGANVDASKMW 143

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 27/137 (19%)
Query: 12  ERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPST 71
           E KG +++   GF        D    L NWE +I G   T +E G +K R+ F  DYP +
Sbjct: 12  ELKGLQEEPVEGFRVTLVDEGD----LYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYS 67
Query: 72  PPKCKFEPPLFHPNVY----------------------PSD-WKPAITIKQILLGIQDLL 108
           PP  +F   ++HPN+Y                      PS+ W P   ++ ILL +  LL
Sbjct: 68  PPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLL 127
Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPN   PA  +A  +Y
Sbjct: 128 NEPNTFSPANVDASVMY 144

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +    D   G  A+P  +     NL  ++ +I G + +P+E G ++L +   DD
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 68  YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP   PK +F   ++HPN          V  ++W PA+ I+ +LL IQ LL  PN  DP
Sbjct: 62  YPMEAPKVRFLTKIYHPNIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +    D   G  A+P  +     NL  ++ +I G + +P+E G ++L +   DD
Sbjct: 9   RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 63
Query: 68  YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP   PK +F   ++HPN          V  ++W PA+ I+ +LL IQ LL  PN  DP
Sbjct: 64  YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 122

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +    D   G  A+P  +     NL  ++ +I G + +P+E G ++L +   DD
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 68  YPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP   PK +F   ++HPN          V  ++W PA+ I+ +LL IQ LL  PN  DP
Sbjct: 62  YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+++E     +D P    A P  +     +L +W+ SI G   +P+  G + L + F  D
Sbjct: 6   RIAKELSDLERDPPTSCSAGPVGD-----DLYHWQASIMGPADSPYAGGVFFLSIHFPTD 60
Query: 68  YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP  PPK  F   ++HPN+  +           W PA+T+ ++LL I  LL + N  DP 
Sbjct: 61  YPFKPPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120
Query: 118 QAEAYTIY 125
             E   IY
Sbjct: 121 VPEIAHIY 128

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
           A  R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L + F
Sbjct: 1   ASKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIHF 55
Query: 65  KDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEPNIK 114
             DYP  PPK  F   ++HPN          +  S W PA+ I ++LL I  LL +PN  
Sbjct: 56  PTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPD 115
Query: 115 DPAQAEAYTIY 125
           DP   E   IY
Sbjct: 116 DPLVPEIARIY 126

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
           ++  W   I G  GTP+E G + L ++   DYP  PPK KF   ++HPN           
Sbjct: 73  DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLD 132
Query: 86  VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
           +   +W PA+TI+  LL IQ +L +P   DP  AE 
Sbjct: 133 ILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEV 168

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +    D   G  A+P  +     NL  ++ +I G + +P+E G ++L +   DD
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 68  YPSTPPKCKFEPPLFHP----------NVYPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP   PK +F   ++HP          +V  ++W PA+ I+ +LL IQ LL  PN  DP
Sbjct: 62  YPMEAPKVRFLTKIYHPAIDRLGRISLDVLKTNWSPALQIRTVLLSIQALLASPNPNDP 120

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 15/133 (11%)
Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           + +A+ R+ +E +  ++D P    A P  +     ++ +W  +I G   +P++ G + L 
Sbjct: 2   AAMAMRRIQKELREIQQDPPCNCSAGPVGD-----DIFHWTATITGPDDSPYQGGLFFLD 56
Query: 62  MIFKDDYPSTPPKCKFEPPLFHPN----------VYPSDWKPAITIKQILLGIQDLLNEP 111
           + F  DYP   P+  F   ++HPN          +    W PA+T+ ++LL I  LL +P
Sbjct: 57  VHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDP 116
Query: 112 NIKDPAQAEAYTI 124
           N  DP   E   +
Sbjct: 117 NPSDPLDPEVANV 129

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV---------- 86
           NL  W  +I G  GT +E   YKL + F   YP   P  KF  P +HPNV          
Sbjct: 58  NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDI 117
Query: 87  YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
               W     ++ ILL IQ LL EPNI  P    A  ++
Sbjct: 118 LKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32  PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
           PD S N   +   I G + +P+E G++KL +   ++YP   PK +F   ++HPNV     
Sbjct: 29  PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 87
Query: 87  -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
                    W PA+ I+ +LL IQ LL+ PN  DP
Sbjct: 88  ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 122

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32  PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
           PD S N   +   I G + +P+E G++KL +   ++YP   PK +F   ++HPNV     
Sbjct: 30  PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 88
Query: 87  -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
                    W PA+ I+ +LL IQ LL+ PN  DP
Sbjct: 89  ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 123

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32  PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
           PD S N   +   I G + +P+E G++KL +   ++YP   PK +F   ++HPNV     
Sbjct: 27  PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 85
Query: 87  -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
                    W PA+ I+ +LL IQ LL+ PN  DP
Sbjct: 86  ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32  PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
           PD S N   +   I G + +P+E G++KL +   ++YP   PK +F   ++HPNV     
Sbjct: 25  PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 83
Query: 87  -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
                    W PA+ I+ +LL IQ LL+ PN  DP
Sbjct: 84  ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 118

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32  PDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----- 86
           PD S N   +   I G + +P+E G++KL +   ++YP   PK +F   ++HPNV     
Sbjct: 32  PDES-NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR 90
Query: 87  -----YPSDWKPAITIKQILLGIQDLLNEPNIKDP 116
                    W PA+ I+ +LL IQ LL+ PN  DP
Sbjct: 91  ICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 125

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 18/137 (13%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M G A   L  +    ++++  G  AKP      S ++M WE  I G + + W+   ++L
Sbjct: 20  MHGRAYLLLHRDFCDLKENNYKGITAKPV-----SEDMMEWEVEIEGLQNSVWQGLVFQL 74
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAI-------------TIKQILLGIQDL 107
            + F  +Y   PP  KF    FHPNV P   +P I             T+  ILL +Q +
Sbjct: 75  TIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVM 134
Query: 108 LNEPNIKDPAQAEAYTI 124
           L+ P +++P   EA  I
Sbjct: 135 LSNPVLENPVNLEAARI 151

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP----------NV 86
           +L + + +I G +GTP+  G ++++++   D+P++PPK  F   +FHP          NV
Sbjct: 41  DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNV 100
Query: 87  YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
              DW   + I+ +LL I+ LL  PN +     EA
Sbjct: 101 LKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEA 135

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 40  NWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD--------- 90
           +    I G   TP+E G +KL +I  + YP  PP+ +F  P++HPN+  +          
Sbjct: 35  DLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKL 94
Query: 91  -----WKPAITIKQILLGIQDLLNEPNIKDPAQAE 120
                W+P++ I  +L  IQ L++EPN  DP  A+
Sbjct: 95  PPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMAD 129

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------V 86
           N+  W  +I G  G+ +E G + L + F  DYP  PPK  F   ++H N          +
Sbjct: 31  NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 87  YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
              +W PA+TI ++LL I  LL + N  DP      T Y
Sbjct: 91  LKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 129

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------V 86
           N+  W  +I G  G+ +E G + L + F  +YP  PPK  F   ++H N          +
Sbjct: 76  NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 87  YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
              +W PA+TI ++LL I  LL + N  DP      T Y
Sbjct: 136 LKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY 174

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV---------- 86
           +L+N++  I   +G  ++SG +         YP  PPK K E  ++HPN+          
Sbjct: 33  DLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNI 91
Query: 87  YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
              DWKP +TI  I+ G+Q L  EPN +DP   EA  +
Sbjct: 92  LREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV 129

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV---------- 86
           +L+N++  I   +G  ++SG +         YP  PPK K E  ++HPN+          
Sbjct: 53  DLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNI 111
Query: 87  YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
              DWKP +TI  I+ G+Q L  EPN +DP   EA  +
Sbjct: 112 LREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEV 149

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
           ++ + + +  G  GTP+E G + + +    +YP  PPK +F+  ++HPN           
Sbjct: 30  DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLD 89
Query: 86  VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           +  + W P IT+K  L+ +Q LL  P   DP  AE    Y
Sbjct: 90  ILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 129

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP-------- 88
           ++ + + +  G  GTP+E G + + +    +YP  PPK +F+  ++HPN+          
Sbjct: 31  DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLD 90
Query: 89  ---SDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
              + W P IT+K  L+ +Q LL  P   DP  AE    Y
Sbjct: 91  ILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY 130

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 23/108 (21%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV---------- 86
           ++  WE  + G   T +E G +K  + F  DYP  PPK KF   ++HPN+          
Sbjct: 32  DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISI 91
Query: 87  --YPSD-----------WKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
              P D           W P  T++ ILL +  +L +PN + PA  +A
Sbjct: 92  LHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDA 139

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 23/108 (21%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD------ 90
           +L  WE  I G   T +E G +K  + F  DYP  PPK KF   ++HPNV  +       
Sbjct: 46  DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISI 105
Query: 91  -----------------WKPAITIKQILLGIQDLLNEPNIKDPAQAEA 121
                            W P  T++ I++ +  +L +PN   PA  +A
Sbjct: 106 LHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDA 153

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E +  +K +    V+   ++ D  + L NW C+I G+ GT +E+  Y L +   D+
Sbjct: 29  RLLDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDN 87
Query: 68  YPSTPPKCKFEPPLFHPNV------------YPSDWKPAITIKQILLGI-QDLLNEPNIK 114
           YP +PP  KF+  +    V               +W    TI+ IL+ + Q++L+  N +
Sbjct: 88  YPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKR 147
Query: 115 --DPAQAEAYT 123
              P + E Y+
Sbjct: 148 LPQPNEGEVYS 158

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E +  +K +    V+   ++ D  + L NW C+I G+ GT +E+  Y L +   D+
Sbjct: 25  RLLDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDN 83
Query: 68  YPSTPPKCKFEPPLFHPNV------------YPSDWKPAITIKQILLGI-QDLLNEPNIK 114
           YP +PP  KF+  +    V               +W    TI+ IL+ + Q++L+  N +
Sbjct: 84  YPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKR 143
Query: 115 --DPAQAEAYT 123
              P + E Y+
Sbjct: 144 LPQPNEGEVYS 154

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
           NL+ W+  I      P++ G++++ + F  +YP  PPK  F+  ++HPN           
Sbjct: 33  NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 91
Query: 86  VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           +   +WKPA    Q++  +  L+N+P  + P +A+    Y
Sbjct: 92  ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 131

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN----------- 85
           NL+ W+  I      P++ G++++ + F  +YP  PPK  F+  ++HPN           
Sbjct: 31  NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV 89
Query: 86  VYPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           +   +WKPA    Q++  +  L+N+P  + P +A+    Y
Sbjct: 90  ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY 129

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 52  PWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-----------YPSDWKPAITIKQI 100
           P+   ++ LR+ F  +YP  PP  KF   ++HPNV              +WKP     Q+
Sbjct: 47  PYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQV 106
Query: 101 LLGIQDLLNEPNIKDPAQAE 120
           L  +  L+N PNI++P + +
Sbjct: 107 LEALNVLVNRPNIREPLRMD 126

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 52  PWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV-----------YPSDWKPAITIKQI 100
           P+   ++ LR+ F  +YP  PP  KF   ++HPNV              +WKP     Q+
Sbjct: 44  PYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQV 103
Query: 101 LLGIQDLLNEPNIKDPAQAE 120
           L  +  L+N PNI++P + +
Sbjct: 104 LEALNVLVNRPNIREPLRMD 123

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 53  WESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV----------YPSDWKPAITIKQILL 102
           +  GS    + F + YP  PPK      +FHPN+             DW PA+ ++ I+ 
Sbjct: 77  YNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIIT 136
Query: 103 GIQDLLNEPNIKDPAQAEA 121
           G+  L  EPN  DP   +A
Sbjct: 137 GLLFLFLEPNPNDPLNKDA 155

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
           A  RL ++    +KD      A+P  +     N++ W   + G + TP+E G Y  ++IF
Sbjct: 15  ATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHGKLIF 69
Query: 65  KDDYPSTPP-----------KCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLNE 110
             ++P  PP           KC     L   + +P  W PA ++  IL G+   + E
Sbjct: 70  PREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVE 126

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 40  NWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD--------- 90
           +++    G  GT +E G +K+ +   DDYP   P   F   L HPNV  +          
Sbjct: 30  DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 91  --WKPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTI 124
             W P  ++  +  + +  LL  PN  DP  ++A ++
Sbjct: 90  QTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASL 126

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ IA+ R+  E K   K              D +   +  E  I G   TP+E G Y+L
Sbjct: 2   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 59
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
            +   + YP  PPK +F   ++HPN           +    W  A+T++ +
Sbjct: 60  EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 110

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ IA+ R+  E K   K              D +   +  E  I G   TP+E G Y+L
Sbjct: 3   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 60
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
            +   + YP  PPK +F   ++HPN           +    W  A+T++ +
Sbjct: 61  EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 111

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 34  GSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKP 93
           G LN   +     G +GTP+E G +K+R+   D YP   P   F   +FHPN+  +    
Sbjct: 48  GGLN--EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTV 105
Query: 94  AI-TIKQILLGIQDLLN-----------EPNIKDPAQAEAYTIY 125
            +  I Q    + DL N            PN  DP   +A  +Y
Sbjct: 106 CLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 149

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ IA+ R+  E K   K              D +   +  E  I G   TP+E G Y+L
Sbjct: 5   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 62
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
            +   + YP  PPK +F   ++HPN           +    W  A+T++ +
Sbjct: 63  EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 113

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ IA+ R+  E K   K              D +   +  E  I G   TP+E G Y+L
Sbjct: 18  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 75
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
            +   + YP  PPK +F   ++HPN           +    W  A+T++ +
Sbjct: 76  EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 126

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 13/111 (11%)
Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ IA+ R+  E K   K              D +   +  E  I G   TP+E G Y+L
Sbjct: 54  MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGE--IAGPPDTPYEGGRYQL 111
Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAITIKQI 100
            +   + YP  PPK +F   ++HPN           +    W  A+T++ +
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTV 162

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
           G A  R+ +E   +  + P         N     N+  W     G + T + +  YKL++
Sbjct: 5   GNANYRIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 63  IFKDDYPSTPPKCKF-EPPLFHPNVYPS----------DWKPAITIKQILLGIQDLL 108
           IF DDYP  PP   F + P  H +VY +          D+ P+++I  ++L I  +L
Sbjct: 60  IFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISML 116

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 31  NPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV--- 86
           NP    +L  WE  I G   TP+E+  +++ +     YP  PPK  F +  + H NV   
Sbjct: 40  NPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSA 99
Query: 87  ---------YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
                     P +W P   +   +  +  LL EP    P   +   I
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAI 146

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 8   RLSEERKGWRKDHPFGFVA--KPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFK 65
           RL +E    + D P G     K  +N     ++  W   + G  GT +E   ++L   F 
Sbjct: 26  RLQKELLALQNDPPPGMTLNEKSVQN-----SITQWIVDMEGAPGTLYEGEKFQLLFKFS 80
Query: 66  DDYPSTPPKCKF--EPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLN 109
             YP   P+  F  E    HP+VY +          DW PA++++ + L I  +L+
Sbjct: 81  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 31  NPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV--- 86
           NP    +L  WE  I G   TP+E+  +++ +     YP  PPK  F +  + H NV   
Sbjct: 40  NPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSA 99
Query: 87  ---------YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
                     P +W P   +   +  +  LL EP    P   +   I
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNI 146

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 31  NPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNV--- 86
           NP    +L  WE  I G   TP+E+  +++ +     YP  PPK  F +  + H NV   
Sbjct: 40  NPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSA 99
Query: 87  ---------YPSDWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTI 124
                     P +W P   +   +  +  LL EP    P   +   I
Sbjct: 100 TGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNI 146

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 47  GKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN-----------VYPSDWKPAI 95
           G +GTP+E G++ L +    DYP   P   F   + HPN           V    W P  
Sbjct: 46  GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 96  TIKQIL-LGIQDLLNEPNIKDPAQAEA 121
            ++ I  + +  LL  PN  DP   +A
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQA 132

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF-EPPLFHPNVYPS------ 89
           N+  W     G + T + +  YK+++IF D+YP  PP   F + P  H +VY +      
Sbjct: 48  NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLS 107
Query: 90  ----DWKPAITIKQILLGIQDLL 108
               D+ P+++I  ++L I  +L
Sbjct: 108 VLGDDYNPSLSISGLILSIISML 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	7e-69
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	9e-67
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-66
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-57
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	3e-57
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	3e-57
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	1e-56
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	4e-53
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	9e-53
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	2e-43
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	1e-41
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	2e-40
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	7e-40
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	1e-39
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	7e-38
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	4e-37
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	8e-37
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	1e-35
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	2e-35
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	1e-34
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	2e-34
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	9e-34
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	1e-33
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	2e-33
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	2e-33
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	3e-33
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	5e-33
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	6e-33
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	8e-33
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	8e-33
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-32
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-32
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	6e-32
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	2e-31
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	4e-31
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	4e-31
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	6e-31
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	8e-31
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	1e-30
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	1e-30
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	4e-30
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	7e-30
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	1e-28
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	6e-28
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	3e-27
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	5e-27
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	3e-26
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	1e-25
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	9e-23
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	8e-22

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  203 bits (518), Expect = 7e-69
 Identities = 72/137 (52%), Positives = 90/137 (65%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS + + RL EERK WRKDHPFGF AKP K  DGS++L  WE  IPGK+GT W  G Y +
Sbjct: 1   MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
            + + ++YPS PPK KF    +HPNVYPS            DW+PAIT+KQI+LG+QDLL
Sbjct: 61  TVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLL 120

Query: 109 NEPNIKDPAQAEAYTIY 125
           + PN   PAQ  A+  +
Sbjct: 121 DSPNPNSPAQEPAWRSF 137

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  197 bits (504), Expect = 9e-67
 Identities = 85/137 (62%), Positives = 98/137 (71%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
            S +   RL EERK WR+DHPFGF AKP K+ DG L+LMNW+  IPGK  T WE G YKL
Sbjct: 7   HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 66

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
            M F ++YP+ PPKC+F PPLFHPNVYPS             WKPAITIKQILLGIQDLL
Sbjct: 67  TMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 126

Query: 109 NEPNIKDPAQAEAYTIY 125
           ++PNI  PAQ EAYT++
Sbjct: 127 DDPNIASPAQTEAYTMF 143

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  197 bits (503), Expect = 1e-66
 Identities = 106/137 (77%), Positives = 118/137 (86%), Gaps = 12/137 (8%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MSGIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KL
Sbjct: 4   MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDLL 108
           RM+FKDDYPS+PPKCKFEPPLFHPNVYPS            DW+PAITIKQILLGIQ+LL
Sbjct: 64  RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELL 123

Query: 109 NEPNIKDPAQAEAYTIY 125
           NEPNI+ PAQAEAYTIY
Sbjct: 124 NEPNIQSPAQAEAYTIY 140

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  175 bits (445), Expect = 1e-57
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 18/138 (13%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M G A   L  +    ++++  G  AKP        ++M WE  I G + + W+   ++L
Sbjct: 20  MHGRAYLLLHRDFCDLKENNYKGITAKPVSE-----DMMEWEVEIEGLQNSVWQGLVFQL 74

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL 107
            + F  +Y   PP  KF    FHPNV P               W    T+  ILL +Q +
Sbjct: 75  TIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVM 134

Query: 108 LNEPNIKDPAQAEAYTIY 125
           L+ P +++P   EA  I 
Sbjct: 135 LSNPVLENPVNLEAARIL 152

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  173 bits (441), Expect = 3e-57
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 27/148 (18%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS  A  RL +E +   KD P G VA P        N+  W+C I G   TP+  G +  
Sbjct: 1   MSKTAQKRLLKELQQLIKDSPPGIVAGP----KSENNIFIWDCLIQGPPDTPYADGVFNA 56

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITI 97
           ++ F  DYP +PPK  F P + HPN+YP+                        W P  ++
Sbjct: 57  KLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSV 116

Query: 98  KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           ++ILL +  +L+EPNI+  A  +A  ++
Sbjct: 117 EKILLSVMSMLSEPNIESGANIDACILW 144

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  173 bits (440), Expect = 3e-57
 Identities = 49/135 (36%), Positives = 66/135 (48%), Gaps = 15/135 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS  A  RL  + K  ++D P G    P  N     N+M W   I G   TPW+ G++KL
Sbjct: 1   MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKL 55

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
            + F +DYP+ PP  +F   +FHPN+Y             W P   +  IL  IQ LL +
Sbjct: 56  SLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCD 115

Query: 111 PNIKDPAQAEAYTIY 125
           PN   PA +EA  +Y
Sbjct: 116 PNPNSPANSEAARMY 130

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  172 bits (439), Expect = 1e-56
 Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 15/135 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           MS  A  RL  + K  ++D P G  A P  +     N+M W   I G   TP+E G+++L
Sbjct: 1   MSTPARRRLMRDFKRMKEDAPPGVSASPLPD-----NVMVWNAMIIGPADTPYEDGTFRL 55

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
            + F ++YP+ PP  KF   +FHPNVY +           W P   +  IL  IQ L N+
Sbjct: 56  LLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFND 115

Query: 111 PNIKDPAQAEAYTIY 125
           PN   PA  EA T++
Sbjct: 116 PNPASPANVEAATLF 130

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  163 bits (415), Expect = 4e-53
 Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 27/147 (18%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           +G A+ RL  E K    + P G VA P        N   WE  I G + T +E G +   
Sbjct: 1   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPAI 56

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIK 98
           + F  DYP +PPK +F   +FHPN+YP                         W P  +++
Sbjct: 57  LSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVE 116

Query: 99  QILLGIQDLLNEPNIKDPAQAEAYTIY 125
           +ILL +  +L EPN +  A  +A  ++
Sbjct: 117 KILLSVVSMLAEPNDESGANVDASKMW 143

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  162 bits (411), Expect = 9e-53
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 14/132 (10%)

Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
              RL +E +  +K +    V+   ++ D    L NW C+I G+ GT +E+  Y L +  
Sbjct: 22  RSFRLLDELERGQKGNVSEGVSFGLESADDI-TLSNWSCTIFGQPGTVFENRIYSLTIFC 80

Query: 65  KDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGI-QDLLNEP 111
            D+YP +PP  KF+  +    V               +W    TI+ IL+ + Q++L+  
Sbjct: 81  DDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSA 140

Query: 112 NIKDPAQAEAYT 123
           N + P   E   
Sbjct: 141 NKRLPQPNEGEV 152

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  138 bits (349), Expect = 2e-43
 Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 14/138 (10%)

Query: 1   MSGI-AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYK 59
           MS +    RL EE +   K       +    + D    +  W  +I G   +  E+  Y 
Sbjct: 2   MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDI-TMTKWNGTILGPPHSNHENRIYS 60

Query: 60  LRMIFKDDYPSTPPKCKFEPPLFHPNVYPS------------DWKPAITIKQILLGIQDL 107
           L +    +YP +PPK  F   +  P V P+            DWK A T++ +LL ++  
Sbjct: 61  LSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKE 120

Query: 108 LNEPNIKDPAQAEAYTIY 125
           +  P  K   Q +    +
Sbjct: 121 MATPANKKLRQPKEGETF 138

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  134 bits (340), Expect = 1e-41
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 27/147 (18%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S  +   L  E KG +++   GF            +L NWE +I G   T +E G +K R
Sbjct: 5   SPSSQKALLLELKGLQEEPVEGFRVTLVDEG----DLYNWEVAIFGPPNTYYEGGYFKAR 60

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIK 98
           + F  DYP +PP  +F   ++HPN+Y +                        W P   ++
Sbjct: 61  LKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVR 120

Query: 99  QILLGIQDLLNEPNIKDPAQAEAYTIY 125
            ILL +  LLNEPN   PA  +A  +Y
Sbjct: 121 TILLSVISLLNEPNTFSPANVDASVMY 147

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  130 bits (330), Expect = 2e-40
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           +      RL EE +  +K    G V+   ++ D  + L  W   I G   T +E+  Y L
Sbjct: 22  VKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSL 80

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-------------DWKPAITIKQILLGIQDL 107
           ++     YP  PP  +F   +    V  S              W+ + +IK +L  ++ L
Sbjct: 81  KIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 140

Query: 108 LNEPNIKDPAQAEAYTIY 125
           +         Q      Y
Sbjct: 141 MMSKENMKLPQPPEGQCY 158

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  128 bits (325), Expect = 7e-40
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             G A  R+ +E   + K+ P         +     N+  W     G + T + +  YK+
Sbjct: 17  NLGNANYRIQKELNNFLKNPPINCTIDVHPS-----NIRIWIVQYVGLENTIYANEVYKI 71

Query: 61  RMIFKDDYPSTPPKCKFE-PPLFHPNVYPS----------DWKPAITIKQILLGIQDLLN 109
           ++IF D+YP  PP   F   P  H +VY +          D+ P+++I  ++L I  +L+
Sbjct: 72  KIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLS 131

Query: 110 EPNIK 114
               K
Sbjct: 132 SAKEK 136

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  129 bits (326), Expect = 1e-39
 Identities = 37/148 (25%), Positives = 56/148 (37%), Gaps = 27/148 (18%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           +       L  +     K+   GF A          +L  WE  I G   T +E G +K 
Sbjct: 14  LVPRGSLLLRRQLAELNKNPVEGFSAGLI----DDNDLYRWEVLIIGPPDTLYEGGVFKA 69

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITI 97
            + F  DYP  PPK KF   ++HPNV  +                        W P  T+
Sbjct: 70  HLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTV 129

Query: 98  KQILLGIQDLLNEPNIKDPAQAEAYTIY 125
           + I++ +  +L +PN   PA  +A   +
Sbjct: 130 ETIMISVISMLADPNGDSPANVDAAKEW 157

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  125 bits (315), Expect = 7e-38
 Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 14/138 (10%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           +      RL EE +  +K    G V+   ++ D  + L  W   I G   T +E+  Y L
Sbjct: 32  VKVPRNFRLLEELEEGQKGVGDGTVSWGLED-DEDMTLTRWTGMIIGPPRTIYENRIYSL 90

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-------------DWKPAITIKQILLGIQDL 107
           ++     YP  PP  +F   +    V  S              W+ + +IK +L  ++ L
Sbjct: 91  KIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRL 150

Query: 108 LNEPNIKDPAQAEAYTIY 125
           +         Q      Y
Sbjct: 151 MMSKENMKLPQPPEGQCY 168

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  122 bits (308), Expect = 4e-37
 Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
                 RL +E +        G  A P  +     NL  W  ++ G K T +ES  YKL 
Sbjct: 7   RHSVSKRLQQELRTLLMSGDPGITAFPDGD-----NLFKWVATLDGPKDTVYESLKYKLT 61

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEP 111
           + F  DYP  PP  KF  P +HPNV             +W  +  ++ ILL +Q LL EP
Sbjct: 62  LEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEP 121

Query: 112 NIKDPAQAEAYTIY 125
           N   P  A+A  ++
Sbjct: 122 NNASPLNAQAADMW 135

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  120 bits (304), Expect = 8e-37
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
            G A  R+ +E   +  + P         N     N+  W     G + T + +  YKL+
Sbjct: 4   MGNANYRIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLK 58

Query: 62  MIFKDDYPSTPPKCKFE-PPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
           +IF DDYP  PP   F   P  H +VY            D+ P+++I  ++L I  +L+ 
Sbjct: 59  IIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSS 118

Query: 111 PNIKD 115
              K 
Sbjct: 119 AKEKK 123

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  118 bits (297), Expect = 1e-35
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 15/114 (13%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E    + D P G         +   ++  W   + G  GT +E   ++L   F   
Sbjct: 26  RLQKELLALQNDPPPGMTLNEKSVQN---SITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 82

Query: 68  YPSTPPKCKF--EPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLN 109
           YP   P+  F  E    HP+VY +          DW PA++++ + L I  +L+
Sbjct: 83  YPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 136

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  118 bits (298), Expect = 2e-35
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 15/135 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           +    I  + +E      D P G    P +      +L + + +I G +GTP+  G +++
Sbjct: 10  LPPHIIRLVYKEVTTLTADPPDGIKVFPNEE-----DLTDLQVTIEGPEGTPYAGGLFRM 64

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
           +++   D+P++PPK  F   +FHPNV  +          DW   + I+ +LL I+ LL  
Sbjct: 65  KLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIH 124

Query: 111 PNIKDPAQAEAYTIY 125
           PN +     EA  + 
Sbjct: 125 PNPESALNEEAGRLL 139

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  115 bits (291), Expect = 1e-34
 Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 15/134 (11%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S +A+ R+ +E +   +D P    A P  +     +L +W+ +I G   +P++ G + L 
Sbjct: 2   SHMALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLT 56

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEP 111
           + F  DYP  PPK  F   ++HPN+            S W PA+TI ++LL I  LL +P
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDP 116

Query: 112 NIKDPAQAEAYTIY 125
           N  DP   E   IY
Sbjct: 117 NPDDPLVPEIARIY 130

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  116 bits (293), Expect = 2e-34
 Identities = 43/135 (31%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
             G    RL +E          G  A P  +     NL  W  +I G  GT +E   YKL
Sbjct: 27  ARGPVGKRLQQELMTLMMSGDKGISAFPESD-----NLFKWVGTIHGAAGTVYEDLRYKL 81

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
            + F   YP   P  KF  P +HPNV              W     ++ ILL IQ LL E
Sbjct: 82  SLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGE 141

Query: 111 PNIKDPAQAEAYTIY 125
           PNI  P    A  ++
Sbjct: 142 PNIDSPLNTHAAELW 156

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  114 bits (287), Expect = 9e-34
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 15/135 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
               A+ R+++E     KD P    A P  +     ++ +W+ +I G + +P+  G + L
Sbjct: 18  YFQGALKRINKELNDLSKDPPTNCSAGPVGD-----DMFHWQATIMGPEDSPYSGGVFFL 72

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
            + F  DYP  PPK  F   ++HPN+              W PA+TI ++LL I  LL +
Sbjct: 73  NIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTD 132

Query: 111 PNIKDPAQAEAYTIY 125
           PN  DP   E   +Y
Sbjct: 133 PNPDDPLVPEIAHLY 147

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  114 bits (287), Expect = 1e-33
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
              +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L
Sbjct: 16  RGSMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFL 70

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
            + F  DYP  PPK  F   ++HPN+            S W PA+TI ++LL I  LL +
Sbjct: 71  TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCD 130

Query: 111 PNIKDPAQAEAYTIY 125
           PN  DP   E   IY
Sbjct: 131 PNPDDPLVPEIARIY 145

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  115 bits (289), Expect = 2e-33
 Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
                + RL +E K    ++     A    +     N   W   I G +GTP+E G + L
Sbjct: 20  QGSKELLRLQKELKDIENENVQEIDAHIKDS-----NFFEWVGFIKGPEGTPYEGGHFTL 74

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYP-----------SDWKPAITIKQILLGIQDLLN 109
            +   +DYP  PPK KF   ++HPN+             ++W PA+TI+  LL IQ LL+
Sbjct: 75  AITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS 134

Query: 110 EPNIKDPAQAEAYTIY 125
           +P   DP  AE   +Y
Sbjct: 135 DPQPDDPQDAEVAKMY 150

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  113 bits (284), Expect = 2e-33
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S     R+ +E +    +   G  A+P ++     N   +   I G + +P+E G++KL 
Sbjct: 3   SAGLPRRIIKETQRLLAEPVPGIKAEPDES-----NARYFHVVIAGPQDSPFEGGTFKLE 57

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEP 111
           +   ++YP   PK +F   ++HPNV              W PA+ I+ +LL IQ LL+ P
Sbjct: 58  LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP 117

Query: 112 NIKDPAQAEAYTIY 125
           N  DP   +    +
Sbjct: 118 NPDDPLANDVAEQW 131

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  114 bits (286), Expect = 3e-33
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 15/135 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           +   +  R+ +E      D P    A P  +     N+  W  +I G  G+ +E G + L
Sbjct: 45  LLSTSAKRIQKELADITLDPPPNCSAGPKGD-----NIYEWRSTILGPPGSVYEGGVFFL 99

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNE 110
            + F  +YP  PPK  F   ++H N+             +W PA+TI ++LL I  LL +
Sbjct: 100 DITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTD 159

Query: 111 PNIKDPAQAEAYTIY 125
            N  DP      T Y
Sbjct: 160 CNPADPLVGSIATQY 174

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  112 bits (282), Expect = 5e-33
 Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 1   MSGIAIGRLSEERKGWRKDHP---FGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGS 57
           M+ IA+ R+  E K   K                     N       I G   TP+E G 
Sbjct: 5   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGR 59

Query: 58  YKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQD 106
           Y+L +   + YP  PPK +F   ++HPN+               W  A+T++ +LL +Q 
Sbjct: 60  YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 119

Query: 107 LLNEPNIKDPAQAEAYTIY 125
           LL      DP  A     Y
Sbjct: 120 LLAAAEPDDPQDAVVANQY 138

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  111 bits (281), Expect = 6e-33
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 15/128 (11%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+++E +    + P G +A P        N  ++   I G  GTP+E G+YKL +   + 
Sbjct: 5   RITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDGTPYEGGTYKLELFLPEQ 59

Query: 68  YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP  PPK +F   ++HPN+              W PA+ I+ +LL IQ LL+ P   DP 
Sbjct: 60  YPMEPPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPL 119

Query: 118 QAEAYTIY 125
            ++    +
Sbjct: 120 DSKVAEHF 127

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  111 bits (280), Expect = 8e-33
 Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 15/134 (11%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           +     R+ +E +    D   G  A+P  +     NL  ++ +I G + +P+E G ++L 
Sbjct: 3   AASLPKRIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELE 57

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEP 111
           +   DDYP   PK +F   ++HPN+            ++W PA+ I+ +LL IQ LL  P
Sbjct: 58  LYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASP 117

Query: 112 NIKDPAQAEAYTIY 125
           N  DP   +    +
Sbjct: 118 NPNDPLANDVAEDW 131

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  112 bits (283), Expect = 8e-33
 Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 19/139 (13%)

Query: 1   MSGIAIGRLSEERKGWRK---DHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGS 57
           M+ IA+ R+  E K   K                     N       I G   TP+E G 
Sbjct: 2   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGR 56

Query: 58  YKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQD 106
           Y+L +   + YP  PPK +F   ++HPN+               W  A+T++ +LL +Q 
Sbjct: 57  YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQA 116

Query: 107 LLNEPNIKDPAQAEAYTIY 125
           LL      DP  A     Y
Sbjct: 117 LLAAAEPDDPQDAVVANQY 135

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  110 bits (278), Expect = 2e-32
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S     RL  E      + P G      K+      + +    I G   TP+E G +KL 
Sbjct: 2   SMQRASRLKRELHMLATEPPPGITCWQDKD-----QMDDLRAQILGGANTPYEKGVFKLE 56

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYP--------------SDWKPAITIKQILLGIQDL 107
           +I  + YP  PP+ +F  P++HPN+                  W+P++ I  +L  IQ L
Sbjct: 57  VIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLL 116

Query: 108 LNEPNIKDPAQAEAYTIY 125
           ++EPN  DP  A+  + +
Sbjct: 117 MSEPNPDDPLMADISSEF 134

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  116 bits (291), Expect = 2e-32
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 15/133 (11%)

Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
            +A+ R+ +E     +D P    A P  +     ++ +W+ +I G   +P++ G + L +
Sbjct: 2   AMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTI 56

Query: 63  IFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEPN 112
            F  DYP  PPK  F   ++HPN+            S W PA+TI ++LL I  LL +PN
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPN 116

Query: 113 IKDPAQAEAYTIY 125
             DP   E   IY
Sbjct: 117 PDDPLVPEIARIY 129

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  109 bits (274), Expect = 6e-32
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 15/129 (11%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +  + D       +         ++ + + +  G  GTP+E G + + +    +
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFV----SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60

Query: 68  YPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK +F+  ++HPN+               W P IT+K  L+ +Q LL  P   DP
Sbjct: 61  YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120

Query: 117 AQAEAYTIY 125
             AE    Y
Sbjct: 121 QDAEVAQHY 129

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  108 bits (272), Expect = 2e-31
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 24/147 (16%)

Query: 1   MSGIAIGRLSEERKGWRKDH---------PFGFVAKPAKNPDGSLNLMNWECSIPGKKGT 51
           M+   + R+ +E K   K             G +      P    +L  WE  I G   T
Sbjct: 3   MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLN--PIDETDLSKWEAIISGPSDT 60

Query: 52  PWESGSYKLRMIFKDDYPSTPPKCKFEP-PLFHPNVY------------PSDWKPAITIK 98
           P+E+  +++ +     YP  PPK  F    + H NV             P +W P   + 
Sbjct: 61  PYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLL 120

Query: 99  QILLGIQDLLNEPNIKDPAQAEAYTIY 125
             +  +  LL EP    P   +   I 
Sbjct: 121 HCVHAVWRLLREPVCDSPLDVDIGNII 147

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  107 bits (270), Expect = 4e-31
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 17/135 (12%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+  A  R+ ++                    D   +L+N++  I       ++SG +  
Sbjct: 3   MASAAQLRIQKDINELNLPKTCDISF-----SDPD-DLLNFKLVI-CPDEGFYKSGKFVF 55

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
                  YP  PPK K E  ++HPN+             DWKP +TI  I+ G+Q L  E
Sbjct: 56  SFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLE 115

Query: 111 PNIKDPAQAEAYTIY 125
           PN +DP   EA  + 
Sbjct: 116 PNPEDPLNKEAAEVL 130

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  109 bits (273), Expect = 4e-31
 Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 15/132 (11%)

Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
              R+ +E +  + D       +         ++ + + +  G  GTP+E G + + +  
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFV----SESDIHHLKGTFLGPPGTPYEGGKFVVDIEV 58

Query: 65  KDDYPSTPPKCKFEPPLFHPNVYP-----------SDWKPAITIKQILLGIQDLLNEPNI 113
             +YP  PPK +F+  ++HPN+             + W P IT+K  L+ +Q LL  P  
Sbjct: 59  PMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEP 118

Query: 114 KDPAQAEAYTIY 125
            DP  AE    Y
Sbjct: 119 NDPQDAEVAQHY 130

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  107 bits (268), Expect = 6e-31
 Identities = 27/147 (18%), Positives = 52/147 (35%), Gaps = 22/147 (14%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSL-------NLMNWECSIPGKKGTPW 53
           M  I+  R+ ++ K   ++      A  + +P  +         + NW   +     + +
Sbjct: 5   MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVY 64

Query: 54  --ESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQIL 101
                +Y+L ++F DDYP  PP  +F  P++ P V              W P      ++
Sbjct: 65  GGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVI 124

Query: 102 LGIQDLL---NEPNIKDPAQAEAYTIY 125
             + D +    +    D    EA    
Sbjct: 125 KLVLDRVFSQYKSRRDDDVNPEARHYL 151

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  109 bits (273), Expect = 8e-31
 Identities = 37/136 (27%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ IA+ R+  E K   K            +     N       I G   TP+E G Y+L
Sbjct: 54  MANIAVQRIKREFKEVLKSEETSKNQIKV-DLVDE-NFTELRGEIAGPPDTPYEGGRYQL 111

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQDLLN 109
            +   + YP  PPK +F   ++HPN+               W  A+T++ +LL +Q LL 
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA 171

Query: 110 EPNIKDPAQAEAYTIY 125
                DP  A     Y
Sbjct: 172 AAEPDDPQDAVVANQY 187

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  107 bits (269), Expect = 1e-30
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R  +           G  A+         ++  W   I G  GTP+E G + L ++   D
Sbjct: 49  RAHDSEPAATHSTSHGVSAQIVGG-----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPD 103

Query: 68  YPSTPPKCKFEPPLFHPNVYP-----------SDWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK KF   ++HPN+              +W PA+TI+  LL IQ +L +P   DP
Sbjct: 104 YPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDP 163

Query: 117 AQAEAYTIY 125
             AE   + 
Sbjct: 164 QDAEVAKMM 172

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  105 bits (265), Expect = 1e-30
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 16/135 (11%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S +A  R+ +E +  +K  P       +       N++ W   +      P+   ++ LR
Sbjct: 2   SHMASMRVVKELEDLQKKPPPYLRNLSS----DDANVLVWHALL-LPDQPPYHLKAFNLR 56

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNE 110
           + F  +YP  PP  KF   ++HPNV  +           +WKP     Q+L  +  L+N 
Sbjct: 57  ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNR 116

Query: 111 PNIKDPAQAEAYTIY 125
           PNI++P + +   + 
Sbjct: 117 PNIREPLRMDLADLL 131

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  105 bits (264), Expect = 4e-30
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ ++                    D   +L+N++  I       ++SG +         
Sbjct: 30  RIQKDINELNLPKTCDISF-----SDPD-DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQG 82

Query: 68  YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP  PPK K E  ++HPN+             DWKP +TI  I+ G+Q L  EPN +DP 
Sbjct: 83  YPHDPPKVKCETMVYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPL 142

Query: 118 QAEAYTIY 125
             EA  + 
Sbjct: 143 NKEAAEVL 150

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  103 bits (260), Expect = 7e-30
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 18/136 (13%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+  A  RL +E +  RK     F            NL+ W+  I      P++ G++++
Sbjct: 1   MA--ASRRLMKELEEIRKCGMKNFRNIQV----DEANLLTWQGLI-VPDNPPYDKGAFRI 53

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLN 109
            + F  +YP  PPK  F+  ++HPN+              +WKPA    Q++  +  L+N
Sbjct: 54  EINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVN 113

Query: 110 EPNIKDPAQAEAYTIY 125
           +P  + P +A+    Y
Sbjct: 114 DPQPEHPLRADLAEEY 129

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  102 bits (255), Expect = 1e-28
 Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL  +                + +          E  I       +  GS    + F + 
Sbjct: 33  RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEV-IVRPDEGYYNYGSINFNLDFNEV 91

Query: 68  YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP  PPK      +FHPN+             DW PA+ ++ I+ G+  L  EPN  DP 
Sbjct: 92  YPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPL 151

Query: 118 QAEAYTIY 125
             +A  + 
Sbjct: 152 NKDAAKLL 159

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 99.3 bits (248), Expect = 6e-28
 Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 17/130 (13%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
            L+ ++  + K    G+  +         +  +++    G  GT +E G +K+ +   DD
Sbjct: 3   SLTRKQCDFTKLIMAGYDLELNNG-----STQDFDVMFHGPNGTAYEGGIWKVHVTLPDD 57

Query: 68  YPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQIL-LGIQDLLNEPNIKD 115
           YP   P   F   L HPNV  +            W P  ++  +  + +  LL  PN  D
Sbjct: 58  YPFASPSIGFMNKLLHPNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSD 117

Query: 116 PAQAEAYTIY 125
           P  ++A ++ 
Sbjct: 118 PLNSDAASLL 127

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 98.2 bits (245), Expect = 3e-27
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD------ 90
            L  +     G +GTP+E G +K+R+   D YP   P   F   +FHPN+  +       
Sbjct: 49  GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLD 108

Query: 91  -----WKPAITIKQILL-GIQDLLNEPNIKDPAQAEAYTIY 125
                W     +  I    +  LL  PN  DP   +A  +Y
Sbjct: 109 VINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY 149

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 97.0 bits (242), Expect = 5e-27
 Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 22/139 (15%)

Query: 4   IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
           +    L +E      + P               N ++            ++ G ++    
Sbjct: 14  VRDKLLVKEVAELEANLPCTCKVHFPDP-----NKLHCFQLTVTPDEGYYQGGKFQFETE 68

Query: 64  FKDDYPSTPPKCKFEPPLFHPNVY----------------PSDWKPAITIKQILLGIQDL 107
             D Y   PPK K    ++HPN+                  + W P  T+K ++ G+  L
Sbjct: 69  VPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSL 128

Query: 108 LNE-PNIKDPAQAEAYTIY 125
             +  N  DP   EA   +
Sbjct: 129 FTDLLNFDDPLNIEAAEHH 147

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 95.6 bits (238), Expect = 3e-26
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 16/133 (12%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
               A  RL ++    +KD      A+P  +     N++ W   + G + TP+E G Y  
Sbjct: 11  APTTATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHG 65

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNV-----------YPSDWKPAITIKQILLGIQDLLN 109
           ++IF  ++P  PP      P                 +P  W PA ++  IL G+   + 
Sbjct: 66  KLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMV 125

Query: 110 EPNIKDPAQAEAY 122
           E      +   + 
Sbjct: 126 EKGPTLGSIETSD 138

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 94.0 bits (234), Expect = 1e-25
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 12/101 (11%)

Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSD------ 90
            +  +     G +GTP+E G++ L +    DYP   P   F   + HPNV          
Sbjct: 36  TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD 95

Query: 91  -----WKPAITIKQIL-LGIQDLLNEPNIKDPAQAEAYTIY 125
                W P   ++ I  + +  LL  PN  DP   +A  + 
Sbjct: 96  VINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL 136

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 89.4 bits (221), Expect = 9e-23
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 26/141 (18%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S     RL++E        P    +      D    L   +  I G   TP+ +G ++  
Sbjct: 74  SAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEE-RLDIMKVLITGPADTPYANGCFEFD 132

Query: 62  MIFKDDYPSTPPKCKFE-----PPLFHPNVYPS-----------------DWKPAI-TIK 98
           + F  DYPS+PP    E        F+PN+Y                    W P   +  
Sbjct: 133 VYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFL 192

Query: 99  QILLGIQDLL--NEPNIKDPA 117
           Q+L+ +Q L+   EP   +P 
Sbjct: 193 QVLVSVQSLILVAEPYFNEPG 213

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 84.2 bits (208), Expect = 8e-22
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 26/144 (18%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGK-KGTPWESG---- 56
           S  A  RL +E +   +   +       +  +   +L +W   +      +P  S     
Sbjct: 25  SVQASDRLMKELRDIYRSQSYKTGIYSVELIND--SLYDWHVKLQKVDPDSPLHSDLQIL 82

Query: 57  -------SYKLRMIFKDDYPSTPPKCKFEPPLFHPNV------------YPSDWKPAITI 97
                     L   FKD++P  PP  +   P+                     W  A +I
Sbjct: 83  KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI 142

Query: 98  KQILLGIQDLLNEPNIKDPAQAEA 121
           + +++ I   L +   +    A  
Sbjct: 143 ESVIMQINATLVKGKARVQFGANK 166

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.91
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.69
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.46
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.17
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	96.87
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	96.83
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	96.27
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	96.14
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	95.28
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	94.52
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	94.43
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	92.77

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-44  Score=252.51  Aligned_cols=120  Identities=41%  Similarity=0.778  Sum_probs=115.5

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||+.+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~   75 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPD-----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE   75 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEecCC-----ccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccC
Confidence            8889999999999999999999999998876     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||||+.+          +|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus        76 i~HPNI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~  130 (169)
T 1ayz_A           76 MFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF  130 (169)
T ss_dssp             CCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHH
T ss_pred             CccCCCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence            999999987          799999999999999999999999999999999875

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-44  Score=248.72  Aligned_cols=120  Identities=31%  Similarity=0.597  Sum_probs=113.8

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||..+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   76 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDES-----NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTK   76 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEECCC-----chheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence            6778899999999999999999999998876     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+.+          +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus        77 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~  131 (154)
T 2c2v_B           77 IYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW  131 (154)
T ss_dssp             CCCTTBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHH
T ss_pred             cccCcCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999976          899999999999999999999999999999999876

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=3e-44  Score=246.70  Aligned_cols=120  Identities=41%  Similarity=0.816  Sum_probs=116.3

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||+.+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----NIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR   75 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeCCC-----CccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence            8989999999999999999999999998876     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+.+          +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        76 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  130 (152)
T 2aak_A           76 MFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMY  130 (152)
T ss_dssp             CCCTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHH
T ss_pred             cccCCCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHH
Confidence            999999987          799999999999999999999999999999999875

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.5e-44  Score=247.74  Aligned_cols=120  Identities=30%  Similarity=0.592  Sum_probs=115.8

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||..+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        10 ~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   84 (158)
T 1zdn_A           10 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEE-----DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK   84 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             cCHHHHHHHHHHHHHHHhCCCCCEEEEECCC-----ChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccC
Confidence            6788999999999999999999999998766     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+.+          +|+|+++|++||.+|+++|.+|+++||+|.|||++|
T Consensus        85 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~  139 (158)
T 1zdn_A           85 IFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL  139 (158)
T ss_dssp             CCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHH
T ss_pred             cccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            999999987          899999999999999999999999999999999875

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=2.3e-44  Score=248.48  Aligned_cols=125  Identities=58%  Similarity=1.141  Sum_probs=116.0

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||+.+.+||++|+++++++++.|+++.+..+.|+..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence            89899999999999999999999999988654444489999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+.+            +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        81 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  137 (157)
T 2gjd_A           81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSF  137 (157)
T ss_dssp             CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHH
T ss_pred             CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            999999876            399999999999999999999999999999999875

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=9.4e-44  Score=243.99  Aligned_cols=119  Identities=30%  Similarity=0.703  Sum_probs=114.9

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      ++.+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~-----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i   76 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVGD-----DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKV   76 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----CceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCc
Confidence            467899999999999999999999999876     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus        77 ~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  130 (151)
T 4gpr_A           77 YHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVL  130 (151)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHH
T ss_pred             ccceECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Confidence            99999987          899999999999999999999999999999999876

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=4.4e-44  Score=248.34  Aligned_cols=124  Identities=69%  Similarity=1.301  Sum_probs=116.7

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |..|.+||+||+++++++++.|+++.+.++.|+..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         8 ~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i   87 (163)
T 3rcz_B            8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPL   87 (163)
T ss_dssp             -CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCC
Confidence            45799999999999999999999999987655555899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+            +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        88 ~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~  143 (163)
T 3rcz_B           88 FHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMF  143 (163)
T ss_dssp             CSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred             ccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            99999976            399999999999999999999999999999999875

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.8e-44  Score=249.38  Aligned_cols=120  Identities=32%  Similarity=0.593  Sum_probs=114.9

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      |++.+.+||++|+++|+++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        20 M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~   94 (169)
T 1yrv_A           20 MHGRAYLLLHRDFCDLKENNYKGITAKPVSE-----DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI   94 (169)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEECST-----TSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----ccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCC
Confidence            7888999999999999999999999998876     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCC-CCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNV-YPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni-~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||| +.+            +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus        95 i~HPNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~  152 (169)
T 1yrv_A           95 PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARIL  152 (169)
T ss_dssp             CCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred             CccCcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            999999 544            699999999999999999999999999999999976

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-43  Score=244.52  Aligned_cols=120  Identities=37%  Similarity=0.630  Sum_probs=115.0

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      |++.+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (156)
T 2e2c_A            6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGD-----NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTP   80 (156)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCEEEEECCC-----CccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence            4567899999999999999999999998766     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+.+          +|+|++||++||.+|+++|.+|++++|+|.|||++|
T Consensus        81 i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~  135 (156)
T 2e2c_A           81 CWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW  135 (156)
T ss_dssp             CCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred             cccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence            999999987          799999999999999999999999999999999987

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-43  Score=246.54  Aligned_cols=121  Identities=39%  Similarity=0.806  Sum_probs=114.3

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||+.+.+||++|+++|+++++.|+++.+.++.    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~----~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~   76 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSEN----NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPS   76 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSS----CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEECCCC----CccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence            89999999999999999999999999887532    99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+.+                       +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        77 i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~  144 (165)
T 2ucz_A           77 ILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW  144 (165)
T ss_dssp             CSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHH
T ss_pred             CccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            999999854                       599999999999999999999999999999999875

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=1.2e-43  Score=245.73  Aligned_cols=125  Identities=85%  Similarity=1.552  Sum_probs=116.9

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      |++.+.+||++|+++++++++.|+++.+..+.++..|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A            4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence            88889999999999999999999999887543333399999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+.+            +|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus        84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  140 (161)
T 2grr_A           84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIY  140 (161)
T ss_dssp             CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            999999976            499999999999999999999999999999999875

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.1e-43  Score=245.54  Aligned_cols=119  Identities=34%  Similarity=0.726  Sum_probs=114.0

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      ++.+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        19 ~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i   93 (166)
T 2ayv_A           19 FQGALKRINKELNDLSKDPPTNCSAGPVGD-----DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKI   93 (166)
T ss_dssp             CTTHHHHHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----CcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCC
Confidence            356889999999999999999999999776     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus        94 ~HPNI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~  147 (166)
T 2ayv_A           94 YHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLY  147 (166)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             cCCcCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Confidence            99999977          799999999999999999999999999999999875

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=2.1e-43  Score=242.04  Aligned_cols=119  Identities=36%  Similarity=0.736  Sum_probs=114.3

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |..+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   76 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI   76 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSSEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEECCC-----cceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCc
Confidence            467899999999999999999999998776     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        77 ~HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~  130 (150)
T 1z2u_A           77 YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  130 (150)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             ccCcCCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHH
Confidence            99999987          799999999999999999999999999999999875

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-43  Score=248.62  Aligned_cols=120  Identities=36%  Similarity=0.608  Sum_probs=113.5

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      |++.+.+||++|+++|+++++.|+++.+.++     |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~  101 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAFPESD-----NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTP  101 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEEEETT-----EEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----cccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecC
Confidence            5677899999999999999999999998776     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||||+.+          +|+|+++|++||.+|+++|.+|+++||+|.+||++|
T Consensus       102 i~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~  156 (179)
T 1i7k_A          102 CYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW  156 (179)
T ss_dssp             CCSTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred             CccCccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh
Confidence            999999987          799999999999999999999999999999999987

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=4.2e-43  Score=242.58  Aligned_cols=120  Identities=31%  Similarity=0.578  Sum_probs=114.2

Q ss_pred             CChHHHHHHHHHHHHHHhC---CCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90             1 MSGIAIGRLSEERKGWRKD---HPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF   77 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f   77 (125)
                      ||+.+.+||++|+++|+++   ++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f   79 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF   79 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSS-----SSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCC-----chheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEe
Confidence            7888999999999999985   578999999876     99999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            78 EPPLFHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        78 ~t~i~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      .|+||||||+. +          +|+|++|+++||.+|+++|.+|++++|+|.+||++|
T Consensus        80 ~t~i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  138 (159)
T 2bep_A           80 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY  138 (159)
T ss_dssp             SSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             eCCCCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            99999999995 3          699999999999999999999999999999999876

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=5.8e-43  Score=243.15  Aligned_cols=119  Identities=34%  Similarity=0.737  Sum_probs=114.2

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      .+.+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        17 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i   91 (165)
T 2c4o_A           17 GSMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI   91 (165)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----CcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCC
Confidence            367899999999999999999999998776     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus        92 ~HPnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~  145 (165)
T 2c4o_A           92 YHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  145 (165)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             cCCcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHH
Confidence            99999987          799999999999999999999999999999999875

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=9.2e-43  Score=241.89  Aligned_cols=120  Identities=37%  Similarity=0.704  Sum_probs=113.5

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |+.+.+||++|+++++++++.|+++.+.++.    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~----nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   76 (164)
T 3h8k_A            1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE----NFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEM   76 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEESSTT----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEECCCC----CccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCC
Confidence            4678999999999999999999999887643    899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+                       +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        77 ~HPNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~  143 (164)
T 3h8k_A           77 FHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMW  143 (164)
T ss_dssp             CCTTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred             ccCCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHH
Confidence            99999865                       399999999999999999999999999999999876

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1e-42  Score=242.78  Aligned_cols=119  Identities=32%  Similarity=0.617  Sum_probs=113.9

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |..+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~-----~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i   76 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKD-----QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPI   76 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCC-----chheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCC
Confidence            567899999999999999999999998876     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC--------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS--------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~--------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+              +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        77 ~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~  134 (169)
T 1yh2_A           77 YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEF  134 (169)
T ss_dssp             CBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             ccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHH
Confidence            99999866              599999999999999999999999999999999875

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=3.2e-43  Score=240.85  Aligned_cols=116  Identities=34%  Similarity=0.717  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      +.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   76 (149)
T 2r0j_A            2 IPRRITKETQNLANEPPPGIMAVPVPE-----NYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHP   76 (149)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCC-----cccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccC
Confidence            468999999999999999999998776     999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+.+          +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus        77 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  127 (149)
T 2r0j_A           77 NIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF  127 (149)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHH
T ss_pred             CCCCCCEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            99987          799999999999999999999999999999999875

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=5.5e-43  Score=239.70  Aligned_cols=117  Identities=28%  Similarity=0.583  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      +.+||++|+++++++++.|+++.+.+++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~----~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   77 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSES----DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP   77 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSS----CSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCC----CceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccC
Confidence            5799999999999999999999987643    899999999999999999999999999999999999999999999999


Q ss_pred             CCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+. +          +|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus        78 ni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  129 (149)
T 1fxt_A           78 NISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY  129 (149)
T ss_dssp             TBCSSSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred             CCcCCCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            9997 4          799999999999999999999999999999999876

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1e-42  Score=250.71  Aligned_cols=119  Identities=36%  Similarity=0.698  Sum_probs=114.0

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      ++.+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        21 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i   95 (216)
T 2pwq_A           21 GSKELLRLQKELKDIENENVQEIDAHIKDS-----NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKI   95 (216)
T ss_dssp             SCHHHHHHHHHHHHHHHSCTTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----ccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCC
Confidence            467899999999999999999999999876     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+. +          +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus        96 ~HPNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~  150 (216)
T 2pwq_A           96 WHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMY  150 (216)
T ss_dssp             CBTTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             cCCCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            9999984 3          699999999999999999999999999999999876

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=6.8e-43  Score=249.57  Aligned_cols=120  Identities=31%  Similarity=0.580  Sum_probs=112.9

Q ss_pred             CChHHHHHHHHHHHHHHhCC---CCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90             1 MSGIAIGRLSEERKGWRKDH---PFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF   77 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f   77 (125)
                      ||+.+.+||++|++++++++   +.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~-----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f   76 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF   76 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECST-----TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEE
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCC-----CccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCcccc
Confidence            88999999999999999873   68999999877     99999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            78 EPPLFHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        78 ~t~i~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      .|+||||||+. +          +|+|++||++||.+|+++|.+|+++||+|.+||++|
T Consensus        77 ~t~i~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~  135 (201)
T 3k9o_A           77 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY  135 (201)
T ss_dssp             SSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             ccCcccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Confidence            99999999995 3          899999999999999999999999999999999876

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=1.8e-42  Score=242.14  Aligned_cols=120  Identities=31%  Similarity=0.540  Sum_probs=99.9

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      ++.+.+||+||+++|+++++.|+++.+.++.    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~----nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i   90 (172)
T 2awf_A           15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDN----DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI   90 (172)
T ss_dssp             CCTTHHHHHHHHHHHHHSCCTTEEEEESSTT----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEECCCc----cccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence            3578999999999999999999999987532    999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+                       +|+|++||++||.+|+++|.+|++++|+|.|||++|
T Consensus        91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~  157 (172)
T 2awf_A           91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEW  157 (172)
T ss_dssp             CCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC--------------
T ss_pred             ccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHH
Confidence            99999875                       399999999999999999999999999999999986

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=4.7e-43  Score=241.44  Aligned_cols=118  Identities=32%  Similarity=0.633  Sum_probs=112.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~-----~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   78 (155)
T 1jat_A            4 ASLPKRIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIY   78 (155)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECCC-----chhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccc
Confidence            45789999999999999999999998876     9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||+.+          +|+|+++|++||.+|+++|.+|+++||+|.+||++|
T Consensus        79 HPnv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  131 (155)
T 1jat_A           79 HPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW  131 (155)
T ss_dssp             BTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred             cCCCCCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            9999966          799999999999999999999999999999999875

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=4.9e-42  Score=241.99  Aligned_cols=118  Identities=36%  Similarity=0.678  Sum_probs=111.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEee-cCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKP-AKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      +.+.+||++|+++++++++.|+++.+ .++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         6 ~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~-----nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   80 (183)
T 3rz3_A            6 PSSQKALLLELKGLQEEPVEGFRVTLVDEG-----DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKM   80 (183)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEECTTC-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEecCcc-----chhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCC
Confidence            57899999999999999999999984 444     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+                       +|+|++||++||.+|+++|.+|++++|+|.|||++|
T Consensus        81 ~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~  147 (183)
T 3rz3_A           81 WHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY  147 (183)
T ss_dssp             CCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred             ccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            99999974                       499999999999999999999999999999999875

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=4.1e-42  Score=236.81  Aligned_cols=121  Identities=27%  Similarity=0.428  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHHhC-CCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             3 GIAIGRLSEERKGWRKD-HPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      ..+.+||++|+++++++ ++.|+++.+..+.|.  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~--nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i   97 (156)
T 2q0v_A           20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDI--TLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI   97 (156)
T ss_dssp             CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCT--TCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEECCCccc--cceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccc
Confidence            45789999999999998 788999988643221  799999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+            +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        98 ~HPNV~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y  153 (156)
T 2q0v_A           98 EMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVY  153 (156)
T ss_dssp             CCTTBCTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC
T ss_pred             ccCCCccCCeEehhhcccccCCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHh
Confidence            99999876            799999999999999999999999999999999987

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=1.1e-42  Score=235.55  Aligned_cols=123  Identities=28%  Similarity=0.404  Sum_probs=109.6

Q ss_pred             CCh-HHHHHHHHHHHHHHhC-CCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEec
Q psy90             1 MSG-IAIGRLSEERKGWRKD-HPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFE   78 (125)
Q Consensus         1 ms~-~~~~Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~   78 (125)
                      ||. .+.+||+||+++++++ ++.|+++.+.+++|.  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus         2 m~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~--nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   79 (138)
T 1jat_B            2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDI--TMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI   79 (138)
T ss_dssp             -CCCCHHHHHHHHHHHHHC----CCEEEEESSTTCT--TCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCC--cceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence            664 4668999999999998 788999988643221  699999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            79 PPLFHPNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        79 t~i~HPni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |+||||||+.+            +|+|++|+++||.+|+++|.+|++++|+|.+||++|
T Consensus        80 t~i~HPnv~~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           80 SKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             BCCCCTTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             cccccCCEeCCCCEEeeecccCCCCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            99999999863            799999999999999999999999999999999987

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=1.2e-41  Score=241.76  Aligned_cols=118  Identities=32%  Similarity=0.616  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.+.+||++|+++|+++++.|+++.+.++     |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~  121 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKGD-----NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY  121 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeecccC-----ccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCc
Confidence            45789999999999999999999998876     9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||+.+          +|+|+++|.+||.+|+++|.+|++++|+|.+||++|
T Consensus       122 HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~  174 (194)
T 3bzh_A          122 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY  174 (194)
T ss_dssp             BTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             cceECCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHH
Confidence            9999976          799999999999999999999999999999999876

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=5.4e-42  Score=243.30  Aligned_cols=118  Identities=34%  Similarity=0.650  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHhCCC-------------CCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCC
Q psy90             3 GIAIGRLSEERKGWRKDHP-------------FGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYP   69 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP   69 (125)
                      +.+.+||++|+++++++++             .|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||
T Consensus        31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP  105 (193)
T 2f4z_A           31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGG-----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYP  105 (193)
T ss_dssp             -CHHHHHHHHHHHHHHC----------------CEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTT
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCC-----CcceEEEEEeCCCCCCcCCCEEEEEEECCCcCC
Confidence            3578999999999999887             7999998876     999999999999999999999999999999999


Q ss_pred             CCCCeeEecCCccCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            70 STPPKCKFEPPLFHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        70 ~~pP~v~f~t~i~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ++||+|+|.|+||||||+. +          +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus       106 ~~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~  172 (193)
T 2f4z_A          106 YNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM  172 (193)
T ss_dssp             TSCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             CCCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            9999999999999999994 3          699999999999999999999999999999999986

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=1.4e-41  Score=249.56  Aligned_cols=120  Identities=31%  Similarity=0.578  Sum_probs=114.4

Q ss_pred             CChHHHHHHHHHHHHHHhC---CCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90             1 MSGIAIGRLSEERKGWRKD---HPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF   77 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f   77 (125)
                      ||+.+.+||++|+++|+++   ++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus        54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~d-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F  128 (253)
T 3e46_A           54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF  128 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECST-----TSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCC-----cccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeee
Confidence            7889999999999999987   468999999877     99999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            78 EPPLFHPNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        78 ~t~i~HPni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      .|+||||||+. +          +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus       129 ~T~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~  187 (253)
T 3e46_A          129 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY  187 (253)
T ss_dssp             SSCCCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             cCCCccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence            99999999995 3          899999999999999999999999999999999876

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=2.3e-41  Score=236.45  Aligned_cols=120  Identities=27%  Similarity=0.513  Sum_probs=109.0

Q ss_pred             CChHHHHHHHHHHHHHHh-C-C------CC---CeEEee-cCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCC
Q psy90             1 MSGIAIGRLSEERKGWRK-D-H------PF---GFVAKP-AKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDY   68 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~y   68 (125)
                      ||+.+.+||++|++++++ . +      +.   ++.+.+ .++     |+++|+++|.||++|||+||.|+++|.||++|
T Consensus         3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~-----nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~Y   77 (172)
T 2y9m_A            3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDET-----DLSKWEAIISGPSDTPYENHQFRILIEVPSSY   77 (172)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTT-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTT
T ss_pred             CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCC-----chhEEEEEEECCCCCcccCCEEEEEEECCCcC
Confidence            888999999999999998 5 3      33   466677 444     99999999999999999999999999999999


Q ss_pred             CCCCCeeEecC-CccCCCCC-CC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            69 PSTPPKCKFEP-PLFHPNVY-PS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        69 P~~pP~v~f~t-~i~HPni~-~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |++||+|+|.| +||||||+ .+           +|+|++||++||.+|+++|.+|+++||+|.|||++|
T Consensus        78 P~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~  147 (172)
T 2y9m_A           78 PMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNII  147 (172)
T ss_dssp             TTSCCEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             CCCCCEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            99999999999 99999995 43           799999999999999999999999999999999976

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=3.1e-41  Score=232.31  Aligned_cols=116  Identities=28%  Similarity=0.570  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEE-eecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVA-KPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      .+.+||++|+++++++++.|+++ .+.++     |+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~-----~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   77 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDA-----NVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIY   77 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSS-----CTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCC-----chheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCc
Confidence            47899999999999999999999 66655     9999999999 99999999999999999999999999999999999


Q ss_pred             CCCCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            83 HPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||+.+           +|+|+++|++||.+|+++|.+|++++|+|.+||++|
T Consensus        78 HPnV~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  131 (155)
T 1wzv_A           78 HPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLL  131 (155)
T ss_dssp             BTTBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred             cCcCCCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence            9999875           799999999999999999999999999999999876

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=6.5e-42  Score=246.32  Aligned_cols=118  Identities=28%  Similarity=0.573  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      .+.+||++|+++++++++.|+++.+.+++    ++++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~----~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   77 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSES----DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYH   77 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSS----SCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCc----cccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCcc
Confidence            47899999999999999999999987652    56799999999999999999999999999999999999999999999


Q ss_pred             CCCCC-C----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            84 PNVYP-S----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        84 Pni~~-~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||+. +          +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        78 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~  130 (215)
T 1tte_A           78 PNISSVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY  130 (215)
T ss_dssp             SSSCSSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHH
T ss_pred             CcCcCCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            99998 4          799999999999999999999999999999999876

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=9.2e-41  Score=231.03  Aligned_cols=115  Identities=30%  Similarity=0.540  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEe-ecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAK-PAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      +.+.+||++|++++  ++++|+++. +.++     |+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~~-----~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   76 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV   76 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSSTT-----CTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccCC-----ccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCC
Confidence            46899999999999  567899987 5555     999999998 99999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        77 ~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~  130 (160)
T 1y8x_A           77 YHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL  130 (160)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             ccCcCCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            99999987          799999999999999999999999999999999875

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=2.2e-40  Score=230.50  Aligned_cols=118  Identities=21%  Similarity=0.399  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.+.+||++|+++++++++.|+++.+.+++    |++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus        13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~----~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   87 (167)
T 3fn1_B           13 SVRDKLLVKEVAELEANLPCTCKVHFPDPN----KLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW   87 (167)
T ss_dssp             CHHHHHHHHHHHHHGGGSCTTEEEECSSSS----CTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCCC----cceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc
Confidence            568899999999999999999999865432    899999999 899999999999999999999999999999999999


Q ss_pred             CCCCCCC----------------CCCCcCCHHHHHHHHHHhhcC-CCCCChhcHHHHhhC
Q psy90            83 HPNVYPS----------------DWKPAITIKQILLGIQDLLNE-PNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~----------------~W~p~~tl~~vl~~i~~ll~~-p~~~~p~n~~aa~~y  125 (125)
                      ||||+.+                +|+|++||++||.+|+++|.+ |++++|+|.|||++|
T Consensus        88 HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~  147 (167)
T 3fn1_B           88 HPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHH  147 (167)
T ss_dssp             CSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHH
T ss_pred             cCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHH
Confidence            9999965                399999999999999999999 799999999999876

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-40  Score=233.36  Aligned_cols=116  Identities=30%  Similarity=0.538  Sum_probs=108.8

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEe-ecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAK-PAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ++.+.+||++|++++  ++++|+++. +.++     |+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~-----nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~   95 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--NLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETM   95 (180)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTT-----CTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEecccc-----cccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence            457899999999999  577899987 5555     999999998 9999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||||+.+          +|+|++||++||.+|+++|.+|++++|+|.+||++|
T Consensus        96 i~HPNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~  150 (180)
T 2nvu_C           96 VYHPNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL  150 (180)
T ss_dssp             CCBTTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             CccCCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            999999977          799999999999999999999999999999999876

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=6.3e-40  Score=226.57  Aligned_cols=119  Identities=25%  Similarity=0.353  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCC-eEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             3 GIAIGRLSEERKGWRKDHPFG-FVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      ..+.+||+||++++++++++| +++.+.+++|  .|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d--~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i  101 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDED--MTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI  101 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTC--TTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEecCCcc--ccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCc
Confidence            457899999999999999888 7777643321  1489999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-C------------CCCCcCCHHHHHHHHHHhhc-CCCCCChhcHHHHh
Q psy90            82 FHPNVYP-S------------DWKPAITIKQILLGIQDLLN-EPNIKDPAQAEAYT  123 (125)
Q Consensus        82 ~HPni~~-~------------~W~p~~tl~~vl~~i~~ll~-~p~~~~p~n~~aa~  123 (125)
                      |||||+. +            +|+|++||++||.+|+++|. +||+++|+|.|||.
T Consensus       102 ~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~  157 (160)
T 2a4d_A          102 NMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC  157 (160)
T ss_dssp             CCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTCB
T ss_pred             eeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhcc
Confidence            9999983 3            79999999999999999996 69999999999984

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=5.8e-41  Score=230.32  Aligned_cols=114  Identities=25%  Similarity=0.493  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      .+.+||+||++++++.   |+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 sa~~Rl~kEl~~l~~~---~~~v~~~~~-----~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   73 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA---GYDLELNNG-----STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLH   73 (152)
T ss_dssp             -CCCHHHHTHHHHHHH---TCCEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHhcCcC---CCEEEEccC-----ccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCcc
Confidence            3679999999999875   677887765     99999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-C----------CCCCcCCHHHHHHH-HHHhhcCCCCCChhcHHHHhhC
Q psy90            84 PNVYP-S----------DWKPAITIKQILLG-IQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        84 Pni~~-~----------~W~p~~tl~~vl~~-i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||+. +          +|+|++++++||.+ |++||.+|++++|+|.+||++|
T Consensus        74 Pni~~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~  127 (152)
T 2onu_A           74 PNVDEASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLL  127 (152)
T ss_dssp             TTBCTTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHH
T ss_pred             CcCcCcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            99995 3          69999999999998 6899999999999999999875

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=2.9e-40  Score=227.27  Aligned_cols=116  Identities=29%  Similarity=0.609  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      +.+||++|+++++++++.|+++.+.++.    |+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~----~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   77 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDEA----NLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHP   77 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSCS----SSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCCC----chheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccc
Confidence            5799999999999999999986554321    9999999998 9999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+.+           +|+|++|+++||.+|+++|.+|++++|+|.+||++|
T Consensus        78 nv~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~  129 (154)
T 1c4z_D           78 NIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY  129 (154)
T ss_dssp             TBCTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             cCCCCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence            99976           699999999999999999999999999999999875

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=233.03  Aligned_cols=116  Identities=28%  Similarity=0.482  Sum_probs=105.9

Q ss_pred             CCh--HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEec
Q psy90             1 MSG--IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFE   78 (125)
Q Consensus         1 ms~--~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~   78 (125)
                      ||+  .+.+||++|++++++   .|+++.+. +     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus        20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-d-----dl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~   90 (179)
T 2z5d_A           20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-G-----GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFM   90 (179)
T ss_dssp             ---CCHHHHHHHHHHHHHHH---SSSCEEEE-E-----ETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             CCCchHHHHHHHHHHHhcCc---CCCEEEEC-C-----CCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEe
Confidence            554  488999999999985   46777776 4     789999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCC-C----------CCCCcCCHHHHHHH-HHHhhcCCCCCChhcHHHHhhC
Q psy90            79 PPLFHPNVYP-S----------DWKPAITIKQILLG-IQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        79 t~i~HPni~~-~----------~W~p~~tl~~vl~~-i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |+||||||+. +          +|+|+++|++||.+ |+++|.+|++++|+|.+||++|
T Consensus        91 t~i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~  149 (179)
T 2z5d_A           91 NKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMY  149 (179)
T ss_dssp             SCCCBTTBCTTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             cCCccCcCCCCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            9999999998 4          79999999999999 9999999999999999999876

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=6.1e-40  Score=228.34  Aligned_cols=120  Identities=20%  Similarity=0.427  Sum_probs=111.1

Q ss_pred             CChHHHHHHHHHHHHHHhCC------------CCCeEEeecCCCCCCCCcceeEEEecCCCCCCCC--CCEEEEEEEeCC
Q psy90             1 MSGIAIGRLSEERKGWRKDH------------PFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWE--SGSYKLRMIFKD   66 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~--gg~f~~~i~fp~   66 (125)
                      ||+.+.+||++|++++++++            ..++.+.+.++     |+++|+++|.||++|||+  ||.|+++|.||+
T Consensus         5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-----nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~   79 (167)
T 4ds2_A            5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTD-----TIYNWILKVKAPADSVYGGAGNTYQLSVLFSD   79 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEES-----STTEEEEEEECCTTSGGGTTCCEEEEEEECCT
T ss_pred             ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCC-----cccEEEEEEECCCCCCccCCCCEEEEEEECCC
Confidence            88889999999999999987            67899988877     999999999999999999  999999999999


Q ss_pred             CCCCCCCeeEecCCccCCCCCCC----------CCCCcCCHHHHHH-HHHHhhcC--CCCCChhcHHHHhhC
Q psy90            67 DYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILL-GIQDLLNE--PNIKDPAQAEAYTIY  125 (125)
Q Consensus        67 ~yP~~pP~v~f~t~i~HPni~~~----------~W~p~~tl~~vl~-~i~~ll~~--p~~~~p~n~~aa~~y  125 (125)
                      +||++||+|+|.|++|||||+.+          +|+|+++++++|+ .|++++..  |++++|+|.|||++|
T Consensus        80 ~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~  151 (167)
T 4ds2_A           80 DYPHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYL  151 (167)
T ss_dssp             TTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHH
T ss_pred             CCCCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHH
Confidence            99999999999999999999976          8999999999764 67777775  899999999999875

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.6e-39  Score=252.13  Aligned_cols=119  Identities=34%  Similarity=0.737  Sum_probs=114.8

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      ++.|.+||+||++++++++++|+++.|.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         1 ~s~a~~RL~kEl~~l~~~~~~~~~~~p~~~-----nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i   75 (399)
T 4ddg_A            1 GAMALKRIHKELNDLARDPPAQCSAGPVGD-----DMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI   75 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCSSEEEEEETT-----EEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----cceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccc
Confidence            357899999999999999999999999876     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus        76 ~HPnv~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~  129 (399)
T 4ddg_A           76 YHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  129 (399)
T ss_dssp             CCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             cccccCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHH
Confidence            99999977          899999999999999999999999999999999875

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=4.2e-39  Score=228.11  Aligned_cols=115  Identities=27%  Similarity=0.465  Sum_probs=107.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEe----ecCCCCCCCCcc---eeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCee
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAK----PAKNPDGSLNLM---NWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKC   75 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~----~~~~~~~~~~~~---~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v   75 (125)
                      +.+.+||++|+++++  .++|+++.    +.++     |++   +|+++|. |++|||+||.|+++|.||++||++||+|
T Consensus        28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~-----nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v   99 (190)
T 3o2u_A           28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDSA-----DRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKV   99 (190)
T ss_dssp             CHHHHHHHHHHHTCC--CCTTEEEEEEECTTCC-----CTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEE
T ss_pred             cHHHHHHHHHHHhcc--CCCCEEEEecCCCCCc-----cCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCcee
Confidence            578999999999998  67899987    5554     999   9999997 7889999999999999999999999999


Q ss_pred             EecCCccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            76 KFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        76 ~f~t~i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|.|+||||||+.+          +|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus       100 ~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~  159 (190)
T 3o2u_A          100 VCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLL  159 (190)
T ss_dssp             EECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             EEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHH
Confidence            99999999999976          799999999999999999999999999999999876

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=7.7e-39  Score=213.37  Aligned_cols=107  Identities=29%  Similarity=0.515  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-c
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-F   82 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~   82 (125)
                      .+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |
T Consensus         6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~-----~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~   80 (125)
T 2fo3_A            6 NANYRIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPK   80 (125)
T ss_dssp             ---CHHHHHHHHHHHSCCTTEEEEECTT-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCcc-----hhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCC
Confidence            4789999999999999999999988765     999999999999999999999999999999999999999999997 9


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCC
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKD  115 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~  115 (125)
                      ||||+.+          +|+|++|+++||.+|+++|.+|+.+.
T Consensus        81 HPnv~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           81 HTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             BTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred             CCcCCCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence            9999986          79999999999999999999998653

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=2e-39  Score=226.36  Aligned_cols=113  Identities=25%  Similarity=0.437  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      .+.+||++|++++++++. ++   +.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~~-----~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~H   82 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPSD-----TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILH   82 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EECS-----STTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCCC-----CceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCccc
Confidence            567999999999999874 33   2333     99999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-C----------CCCCcCCHHHHHHHH-HHhhcCCCCCChhcHHHHhhC
Q psy90            84 PNVYP-S----------DWKPAITIKQILLGI-QDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        84 Pni~~-~----------~W~p~~tl~~vl~~i-~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||+. +          +|+|++||++||.+| ++||.+|++++|+|.+||++|
T Consensus        83 PNi~~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~  136 (171)
T 1yf9_A           83 PNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL  136 (171)
T ss_dssp             TTBCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHH
T ss_pred             ccCcccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            99995 4          799999999999997 799999999999999999875

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=3.3e-39  Score=225.00  Aligned_cols=118  Identities=25%  Similarity=0.363  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCC-eEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             4 IAIGRLSEERKGWRKDHPFG-FVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      .+.+||++|+++++++++.| +++.+.+++|  .|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus        35 p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d--~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           35 PRNFRLLEELEEGQKGVGDGTVSWGLEDDED--MTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CHHHHHHHHHHHHHHCCGGGCEEEEESSTTC--SSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEecCccc--ccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence            46899999999999998888 6777643321  14999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-CC------------CCCCcCCHHHHHHHHHHhhcC-CCCCChhcHHHHh
Q psy90            83 HPNVY-PS------------DWKPAITIKQILLGIQDLLNE-PNIKDPAQAEAYT  123 (125)
Q Consensus        83 HPni~-~~------------~W~p~~tl~~vl~~i~~ll~~-p~~~~p~n~~aa~  123 (125)
                      ||||+ .+            +|+|++||++||.+|+++|.+ ||+++|+|.|||.
T Consensus       113 HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa~  167 (170)
T 2hlw_A          113 MNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQC  167 (170)
T ss_dssp             CSSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCCB
T ss_pred             cCCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCccccc
Confidence            99998 33            799999999999999999985 9999999999983

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=1.2e-37  Score=210.25  Aligned_cols=105  Identities=27%  Similarity=0.506  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-c
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-F   82 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~   82 (125)
                      .+.+||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |
T Consensus        20 ~~~~RL~kEl~~l~~~~~~~~~~~~~~~-----nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~   94 (136)
T 2h2y_A           20 NANYRIQKELNNFLKNPPINCTIDVHPS-----NIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPK   94 (136)
T ss_dssp             SHHHHHHHHHHHHHHSCCTTEEEEECTT-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeccc-----cccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCC
Confidence            5789999999999999999999988765     999999999999999999999999999999999999999999997 9


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCC
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNI  113 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~  113 (125)
                      ||||+.+          +|+|++|+++||.+|+++|.+|+.
T Consensus        95 HPnv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           95 HTHVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             CTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CCcCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence            9999987          799999999999999999999974

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.5e-37  Score=207.38  Aligned_cols=103  Identities=29%  Similarity=0.634  Sum_probs=95.2

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEe--ecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEec
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAK--PAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFE   78 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~--~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~   78 (125)
                      ||+. .+||+||++++++++++|+++.  +.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.
T Consensus        20 Ms~~-~~RL~kEl~~l~~~~~~gi~v~~~~~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~   93 (136)
T 2a7l_A           20 MASM-QKRLQKELLALQNDPPPGMTLNEKSVQN-----SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFT   93 (136)
T ss_dssp             GTTS-CHHHHHHHHHHHHSCCTTCCCCTTCCCC-----SCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEE
T ss_pred             ccHH-HHHHHHHHHHHHhCCCCCEEEEEeeCcc-----ccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEe
Confidence            5553 4999999999999999999865  5544     999999999999999999999999999999999999999999


Q ss_pred             CCcc--CCCCCCC----------CCCCcCCHHHHHHHHHHhhc
Q psy90            79 PPLF--HPNVYPS----------DWKPAITIKQILLGIQDLLN  109 (125)
Q Consensus        79 t~i~--HPni~~~----------~W~p~~tl~~vl~~i~~ll~  109 (125)
                      |++|  ||||+.+          +|+|++||++||.+|+++|.
T Consensus        94 T~i~~~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A           94 GENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             SSCCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CCCcCCCccCCCCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence            9999  9999977          79999999999999999984

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=5.4e-35  Score=220.29  Aligned_cols=116  Identities=28%  Similarity=0.575  Sum_probs=105.7

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCC----eEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeE
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFG----FVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCK   76 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~----~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~   76 (125)
                      ||+.+.+||++|+++|+++++.|    +.+.+.++     |++.|+++|.||++|||+||.|+|+|.||++||++||+|+
T Consensus        73 ~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ed-----nl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~  147 (323)
T 3ceg_A           73 NSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEE-----RLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVN  147 (323)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESS-----CTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcccceeecccCC-----CccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEE
Confidence            57789999999999999998775    44556665     9999999999999999999999999999999999999999


Q ss_pred             ecCC-----ccCCCCCCC-----------------CCCCcC-CHHHHHHHHHHhhc--CCCCCChhcHHH
Q psy90            77 FEPP-----LFHPNVYPS-----------------DWKPAI-TIKQILLGIQDLLN--EPNIKDPAQAEA  121 (125)
Q Consensus        77 f~t~-----i~HPni~~~-----------------~W~p~~-tl~~vl~~i~~ll~--~p~~~~p~n~~a  121 (125)
                      |.|+     +|||||+.+                 +|+|++ ||.+||.+|++||.  +|++++|+|.+|
T Consensus       148 F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a  217 (323)
T 3ceg_A          148 LETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERS  217 (323)
T ss_dssp             ECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGG
T ss_pred             EeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHH
Confidence            9998     999999875                 499999 89999999999996  677799999987

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.7e-33  Score=197.85  Aligned_cols=106  Identities=26%  Similarity=0.498  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.+.+||++|+++|++++++|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  
T Consensus        13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~-----nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--   85 (187)
T 2f4w_A           13 TTATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--   85 (187)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCC-----ccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--
Confidence            46889999999999999999999998876     99999999999999999999999999999999999999999999  


Q ss_pred             CCCCCCC-------------CCCCcCCHHHHHHHHHHhhcCCCCCC
Q psy90            83 HPNVYPS-------------DWKPAITIKQILLGIQDLLNEPNIKD  115 (125)
Q Consensus        83 HPni~~~-------------~W~p~~tl~~vl~~i~~ll~~p~~~~  115 (125)
                      |||++.+             +|+|+++|.+||.+|+++|.+|+++.
T Consensus        86 ~~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~  131 (187)
T 2f4w_A           86 NGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL  131 (187)
T ss_dssp             CSSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred             CceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence            7776643             69999999999999999999999864

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=3.6e-34  Score=202.16  Aligned_cols=109  Identities=21%  Similarity=0.369  Sum_probs=101.4

Q ss_pred             CChHHHHHHHHHHHHHHhCC---CCCeEEeecCCCCCCCCcceeEEEecCC-CCCCCCC-----------CEEEEEEEeC
Q psy90             1 MSGIAIGRLSEERKGWRKDH---PFGFVAKPAKNPDGSLNLMNWECSIPGK-KGTPWES-----------GSYKLRMIFK   65 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp-~~t~y~g-----------g~f~~~i~fp   65 (125)
                      ||..+.+||++|++++++++   +.++++.+.++     |+++|+++|.|| ++|||+|           |.|+++|.||
T Consensus        24 ~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~d-----nl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp   98 (186)
T 1zuo_A           24 GSVQASDRLMKELRDIYRSQSYKTGIYSVELIND-----SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFK   98 (186)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETT-----EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCC-----ccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECC
Confidence            67889999999999999988   68899998876     999999999998 9999998           8999999999


Q ss_pred             CCCCCCCCeeEecCCccCC-CCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCC
Q psy90            66 DDYPSTPPKCKFEPPLFHP-NVYPS-----------DWKPAITIKQILLGIQDLLNEPNIK  114 (125)
Q Consensus        66 ~~yP~~pP~v~f~t~i~HP-ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~  114 (125)
                      ++||++||+|+|.|++||| ||+.+           +|+|++||++||.+|+++|.+|+.+
T Consensus        99 ~~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~  159 (186)
T 1zuo_A           99 DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKAR  159 (186)
T ss_dssp             TTTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChh
Confidence            9999999999999999999 58865           6999999999999999999998753

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.91  E-value=6.3e-26  Score=155.57  Aligned_cols=85  Identities=20%  Similarity=0.338  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC----------EEEEEEEeCCCCCCCCCee
Q psy90             6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG----------SYKLRMIFKDDYPSTPPKC   75 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~yP~~pP~v   75 (125)
                      .+||++|++.|++      ++.+..+     |++.|.+.+.||+||+|+||          .|.+++.||++||++||+|
T Consensus        34 ~~RL~eE~k~L~k------~v~p~k~-----n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV  102 (172)
T 2z6o_A           34 VQRLKEEYQSLIR------YVENNKN-----ADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEI  102 (172)
T ss_dssp             HHHHHHHHHHHHH------HHHHHHH-----TTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             HHHHHHHHHHHHH------HhccCcc-----ccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCee
Confidence            9999999999998      3555555     99999999999999999999          9999999999999999999


Q ss_pred             EecCC-ccCCCCCCC--------------CCCCcCCHHHHH
Q psy90            76 KFEPP-LFHPNVYPS--------------DWKPAITIKQIL  101 (125)
Q Consensus        76 ~f~t~-i~HPni~~~--------------~W~p~~tl~~vl  101 (125)
                      +|.++ ++|||||.+              .|+|+++|.++|
T Consensus       103 ~F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL  143 (172)
T 2z6o_A          103 AVPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLM  143 (172)
T ss_dssp             BCGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHH
T ss_pred             eeCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHH
Confidence            99998 999999998              344999999998

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.69  E-value=1e-16  Score=110.38  Aligned_cols=105  Identities=17%  Similarity=0.174  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHhCCC---CCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCE---EEEEEEeCCCCCCCCCeeEecC
Q psy90             6 IGRLSEERKGWRKDHP---FGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGS---YKLRMIFKDDYPSTPPKCKFEP   79 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~---f~~~i~fp~~yP~~pP~v~f~t   79 (125)
                      .+|..+|+.++.+.-+   +...+...++     ...++-+.+.|.-.++|+|+.   |.+.|-||.+||++||.|.|.+
T Consensus        30 ~~~~~~dv~~~l~~yp~L~p~t~~yt~~d-----G~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p  104 (162)
T 3r3q_A           30 GRTTFHDSLALLDNFHSLRPRTRVFTHSD-----GTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINL  104 (162)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTT-----SCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECG
T ss_pred             hhHHHHHHHHHHHhCCCCceeeeeEEcCC-----CChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEEC
Confidence            3677788888765432   1222333333     556677777777779999998   8899999999999999998865


Q ss_pred             -------C---cc-CCCCCCC---------CCCC-cCCHHHHHHHHHHhhcCCCCCC
Q psy90            80 -------P---LF-HPNVYPS---------DWKP-AITIKQILLGIQDLLNEPNIKD  115 (125)
Q Consensus        80 -------~---i~-HPni~~~---------~W~p-~~tl~~vl~~i~~ll~~p~~~~  115 (125)
                             +   |+ ||||+.+         +|++ +++|.+++.+|+++|.+|++|.
T Consensus       105 ~t~~m~~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          105 ENFDMNTISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             GGCCTTTSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             CCccccccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence                   1   77 9999988         8999 7899999999999999999875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.46  E-value=3.4e-15  Score=100.53  Aligned_cols=75  Identities=19%  Similarity=0.275  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC----------EEEEEEEeCCCCCCCCC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG----------SYKLRMIFKDDYPSTPP   73 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg----------~f~~~i~fp~~yP~~pP   73 (125)
                      ....||..|++.|-+-      +.-..+     +-..|...+.||+||+|.|+          .|+++++||.+||.+||
T Consensus        34 ~w~~RlkeEy~alI~y------v~~nK~-----~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPP  102 (168)
T 3kpa_A           34 KWTARLKEEYASLITY------VEHNKA-----SDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPP  102 (168)
T ss_dssp             HHHHHHHHHHHHHHHH------HHHHHH-----TTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCC
T ss_pred             HHHHHHHHHHHHHHHH------HHhccc-----ccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCC
Confidence            3578999999998631      111222     44569999999999999999          99999999999999999


Q ss_pred             eeEecCC-ccCCCCCCC
Q psy90            74 KCKFEPP-LFHPNVYPS   89 (125)
Q Consensus        74 ~v~f~t~-i~HPni~~~   89 (125)
                      +|+|.+. .+|||+|.+
T Consensus       103 eI~Fp~ldgkt~kmYr~  119 (168)
T 3kpa_A          103 EIALPELEGKTVKMYRG  119 (168)
T ss_dssp             CCBCGGGTTTCSSEETT
T ss_pred             EeecccccCcCccccCC
Confidence            9999995 899999988

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.17  E-value=1e-10  Score=79.15  Aligned_cols=69  Identities=26%  Similarity=0.589  Sum_probs=62.0

Q ss_pred             CcceeEEEecCCCCCCCCCCEEEE--EEEeCCCCCCCCCeeEecCC------ccCCCCCCC---------CCCC-cCCHH
Q psy90            37 NLMNWECSIPGKKGTPWESGSYKL--RMIFKDDYPSTPPKCKFEPP------LFHPNVYPS---------DWKP-AITIK   98 (125)
Q Consensus        37 ~~~~w~~~i~Gp~~t~y~gg~f~~--~i~fp~~yP~~pP~v~f~t~------i~HPni~~~---------~W~p-~~tl~   98 (125)
                      ++..|.++|.    .+|+|+.|.+  .|-||++||++||.| |.++      ..||||+.+         +|++ .++|.
T Consensus        52 ~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~W~~~~snL~  126 (146)
T 3obq_A           52 ELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHEWKHPQSDLL  126 (146)
T ss_dssp             EEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHTCCTTTCCHH
T ss_pred             eEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccccCCCCCCHH
Confidence            8899999997    6799999995  889999999999999 7666      489999998         8988 89999


Q ss_pred             HHHHHHHHhhcC
Q psy90            99 QILLGIQDLLNE  110 (125)
Q Consensus        99 ~vl~~i~~ll~~  110 (125)
                      +++..++++|.+
T Consensus       127 ~ll~~l~~~F~~  138 (146)
T 3obq_A          127 GLIQVMIVVFGD  138 (146)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999999874

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.87  E-value=0.0089  Score=38.56  Aligned_cols=68  Identities=15%  Similarity=0.214  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEP   79 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t   79 (125)
                      ...+...|+..|...-+..+.+.  ..     ....+.+.|..-.+..-+.-.+.+.|.||++||..||.+.+.+
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~--~~-----~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL--SE-----NPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC--CS-----SSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc--cC-----CCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            35667889999987766555542  11     3456666665322222233478899999999999999998765

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=96.83  E-value=0.028  Score=36.19  Aligned_cols=71  Identities=10%  Similarity=0.045  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCC--CCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPW--ESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y--~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      .+...|+..|+..-+..+........   .....+.+.+..+.+..-  ..-.+.+.|.+|++||..+|.|...+.
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~~~~---~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKGNGR---TSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECCTTS---SCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceEEecCCCC---CCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            46778999998777666665422110   034455666653222111  124788999999999999999988763

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=96.27  E-value=0.072  Score=36.96  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-cCCC
Q psy90             7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-FHPN   85 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~HPn   85 (125)
                      +||.+|+.++-=+.     +...+.     ++...++.+...     .|....++|.++.+||.++|.+...-++ ++. 
T Consensus         4 ~~li~Ei~~iGW~~-----l~~id~-----~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~~-   67 (186)
T 3zqs_A            4 SSLIEEIGTLGWDK-----LVYADT-----CFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPVPFCA-   67 (186)
T ss_dssp             CSHHHHHHHHCGGG-----EEEECT-----TSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSSCCCC-
T ss_pred             HHHHHHHHHhCCce-----eeeecC-----CccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCCCccc-
Confidence            46778888874222     122222     778888888743     3678999999999999999987765554 332 


Q ss_pred             CCCCCCCCcCCHHHHHHHHHHhhc
Q psy90            86 VYPSDWKPAITIKQILLGIQDLLN  109 (125)
Q Consensus        86 i~~~~W~p~~tl~~vl~~i~~ll~  109 (125)
                          .|++..++.+++.+.+..+.
T Consensus        68 ----~w~~~ssL~~v~~qF~~~Le   87 (186)
T 3zqs_A           68 ----SWTPQSSLISIYSQFLAAIE   87 (186)
T ss_dssp             ----CCCTTCCHHHHHHHHHHHHH
T ss_pred             ----ccCCCccHHHHHHHHHHHHH
Confidence                79999999999887776654

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.073  Score=34.62  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEeecCCCC-CCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             6 IGRLSEERKGWRKDHPFGFVAKPAKNPD-GSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ..+-..|+..|...-+..+......... .......+.+.|.+..+ .-..-.+.+.|.+|.+||..+|.|.+.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            4456778888887655544432111000 00024567777763222 11234788999999999999999998653

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.28  E-value=0.034  Score=35.80  Aligned_cols=68  Identities=12%  Similarity=0.031  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhCCCC--CeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecC
Q psy90             7 GRLSEERKGWRKDHPF--GFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEP   79 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~--~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t   79 (125)
                      .+...|+..|+..-+.  .+.......    .+...+.+.+... +..=..-.+.+.|.+|.+||..+|.|...+
T Consensus        10 e~q~~EleaL~SIy~d~~e~~~~~~~~----~~~~~f~i~l~~~-~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           10 EPVQEELSVLAAIFCRPHEWEVLSRSE----TDGTVFRIHTKAE-GFMDADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             HHHHHHHHHHHHHHCCTTTCCCSEECS----SSCEEEEEEEECC-TTTTCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCceEEecCCC----CCCCeEEEEecCC-CCCCCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            4566788888754432  333211110    0345777777632 210012478999999999999999997653

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=94.52  E-value=0.24  Score=32.99  Aligned_cols=72  Identities=8%  Similarity=0.011  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHhCCC--CCeEEeecC----------CCCCC-CCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCC
Q psy90             5 AIGRLSEERKGWRKDHP--FGFVAKPAK----------NPDGS-LNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPST   71 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~--~~~~~~~~~----------~~~~~-~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~   71 (125)
                      ...+-..|+..|...-+  ..+.+.-..          ..... .....+.+.+.- .+ +  ...+.+.|.+|.+||..
T Consensus        15 ~~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~-~~-~--~~~i~L~v~lP~~YP~~   90 (154)
T 2daw_A           15 SLQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQI-EE-P--KVKIDLQVTMPHSYPYL   90 (154)
T ss_dssp             HHHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEE-TT-T--TEEEEEEEEECSSTTSS
T ss_pred             hHHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEec-CC-C--CceEEEEEEcCCCCCCC
Confidence            34566778888887655  455542100          00000 011244444331 11 1  13799999999999999


Q ss_pred             CCeeEecCC
Q psy90            72 PPKCKFEPP   80 (125)
Q Consensus        72 pP~v~f~t~   80 (125)
                      +|.|...+.
T Consensus        91 ~P~i~l~~~   99 (154)
T 2daw_A           91 ALQLFGRSS   99 (154)
T ss_dssp             CCEEEEECS
T ss_pred             CCcEEEEeC
Confidence            999987653

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=94.43  E-value=0.54  Score=30.24  Aligned_cols=73  Identities=12%  Similarity=0.057  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCC-C-CCCCCEEEEEEEeCCCCCCCCCeeEecC
Q psy90             6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKG-T-PWESGSYKLRMIFKDDYPSTPPKCKFEP   79 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~-t-~y~gg~f~~~i~fp~~yP~~pP~v~f~t   79 (125)
                      ..+...|+..|+..-+..+........-.......+.+.+. +.+ . .-..-.+.+.|.||++||..+|.|.+.+
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   86 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEec
Confidence            45677899888877665555432110000001345566665 221 1 0012468899999999999999998753

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=92.77  E-value=0.51  Score=31.14  Aligned_cols=24  Identities=21%  Similarity=0.401  Sum_probs=21.2

Q ss_pred             EEEEEEEeCCCCCCCCCeeEecCC
Q psy90            57 SYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus        57 ~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      .+.+.|.+|.+||..||.|.....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            688999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	125
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	3e-35
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	1e-28
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	7e-27
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-26
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	6e-26
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	9e-26
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	1e-25
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-25
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-24
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	1e-23
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	1e-22
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-22
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-22
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-22
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-22
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-21
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-21
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-21
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	4e-21
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	8e-21
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	1e-20
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	2e-20
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	2e-19
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	1e-18
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	2e-18
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	3e-18
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	4e-18
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	4e-18
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	7e-13
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	2e-12
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	7e-10

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score =  116 bits (292), Expect = 3e-35
 Identities = 103/135 (76%), Positives = 115/135 (85%), Gaps = 12/135 (8%)

Query: 3   GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRM 62
           GIA+ RL++ERK WRKDHPFGFVA P KNPDG++NLMNWEC+IPGKKGTPWE G +KLRM
Sbjct: 1   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 60

Query: 63  IFKDDYPSTPPKCKFEPPLFHPNVY------------PSDWKPAITIKQILLGIQDLLNE 110
           +FKDDYPS+PPKCKFEPPLFHPNVY              DW+PAITIKQILLGIQ+LLNE
Sbjct: 61  LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNE 120

Query: 111 PNIKDPAQAEAYTIY 125
           PNI+DPAQAEAYTIY
Sbjct: 121 PNIQDPAQAEAYTIY 135

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 99.8 bits (248), Expect = 1e-28
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 18/138 (13%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M G A   L  +    ++++  G  AKP        ++M WE  I G + + W+   ++L
Sbjct: 1   MHGRAYLLLHRDFCDLKENNYKGITAKPVSE-----DMMEWEVEIEGLQNSVWQGLVFQL 55

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-------------WKPAITIKQILLGIQDL 107
            + F  +Y   PP  KF    FHPNV P               W    T+  ILL +Q +
Sbjct: 56  TIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVM 115

Query: 108 LNEPNIKDPAQAEAYTIY 125
           L+ P +++P   EA  I 
Sbjct: 116 LSNPVLENPVNLEAARIL 133

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 95.0 bits (236), Expect = 7e-27
 Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 15/128 (11%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL EE +  +K    G V+   ++ +    L  W   I G   T +E+  Y L++     
Sbjct: 9   RLLEELEEGQKGVGDGTVSWGLEDDEDM-TLTRWTGMIIGPPRTIYENRIYSLKIECGPK 67

Query: 68  YPSTPPKCKFEPPLFHPNVYP-------------SDWKPAITIKQILLGIQDLLNEP-NI 113
           YP  PP  +F   +    V               + W+ + +IK +L  ++ L+    N+
Sbjct: 68  YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 127

Query: 114 KDPAQAEA 121
           K P   E 
Sbjct: 128 KLPQPPEG 135

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 94.0 bits (233), Expect = 2e-26
 Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 15/134 (11%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S  A  RL  + K  ++D P G  A P  +     N+M W   I G   TP+E G+++L 
Sbjct: 1   STPARRRLMRDFKRMKEDAPPGVSASPLPD-----NVMVWNAMIIGPADTPYEDGTFRLL 55

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYP----------SDWKPAITIKQILLGIQDLLNEP 111
           + F ++YP+ PP  KF   +FHPNVY           + W P   +  IL  IQ L N+P
Sbjct: 56  LEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDP 115

Query: 112 NIKDPAQAEAYTIY 125
           N   PA  EA T++
Sbjct: 116 NPASPANVEAATLF 129

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 93.0 bits (230), Expect = 6e-26
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 13/136 (9%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           M+ IA+ R+  E K   K              D   N       I G   TP+E G Y+L
Sbjct: 1   MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE--NFTELRGEIAGPPDTPYEGGRYQL 58

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQDLLN 109
            +   + YP  PPK +F   ++HPN+               W  A+T++ +LL +Q LL 
Sbjct: 59  EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLA 118

Query: 110 EPNIKDPAQAEAYTIY 125
                DP  A     Y
Sbjct: 119 AAEPDDPQDAVVANQY 134

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 92.5 bits (229), Expect = 9e-26
 Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 15/128 (11%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E +        G  A P  +     NL  W  ++ G K T +ES  YKL + F  D
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDGD-----NLFKWVATLDGPKDTVYESLKYKLTLEFPSD 67

Query: 68  YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP  PP  KF  P +HPNV  S          +W  +  ++ ILL +Q LL EPN   P 
Sbjct: 68  YPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPL 127

Query: 118 QAEAYTIY 125
            A+A  ++
Sbjct: 128 NAQAADMW 135

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 91.6 bits (227), Expect = 1e-25
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL EE +   K       +    + D  + +  W  +I G   +  E+  Y L +    +
Sbjct: 8   RLLEELEKGEKGFGPESCSYGLADSD-DITMTKWNGTILGPPHSNHENRIYSLSIDCGPN 66

Query: 68  YPSTPPKCKFEPPLFHPNVYP------------SDWKPAITIKQILLGIQDLLNEPNIKD 115
           YP +PPK  F   +  P V P             DWK A T++ +LL ++  +  P  K 
Sbjct: 67  YPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKK 126

Query: 116 PAQAEAYTIY 125
             Q +    +
Sbjct: 127 LRQPKEGETF 136

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 90.6 bits (224), Expect = 8e-25
 Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 27/147 (18%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           S  A  RL +E +   KD P G VA P        N+  W+C I G   TP+  G +  +
Sbjct: 1   SKTAQKRLLKELQQLIKDSPPGIVAGP----KSENNIFIWDCLIQGPPDTPYADGVFNAK 56

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIK 98
           + F  DYP +PPK  F P + HPN+YP+                        W P  +++
Sbjct: 57  LEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVE 116

Query: 99  QILLGIQDLLNEPNIKDPAQAEAYTIY 125
           +ILL +  +L+EPNI+  A  +A  ++
Sbjct: 117 KILLSVMSMLSEPNIESGANIDACILW 143

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 90.2 bits (223), Expect = 1e-24
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 27/141 (19%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
            L ++    R+    GF A    + D    +  WE  + G   T +E G +K  + F  D
Sbjct: 4   LLKKQLADMRRVPVDGFSAGLVDDND----IYKWEVLVIGPPDTLYEGGFFKAILDFPRD 59

Query: 68  YPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIKQILLGI 104
           YP  PPK KF   ++HPN+                           W P  T++ ILL +
Sbjct: 60  YPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSV 119

Query: 105 QDLLNEPNIKDPAQAEAYTIY 125
             +L +PN + PA  +A  + 
Sbjct: 120 ISMLTDPNFESPANVDAAKMQ 140

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 87.2 bits (215), Expect = 1e-23
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 15/132 (11%)

Query: 4   IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMI 63
           +A+ R+ +E +   +D P    A P  +     +L +W+ +I G   +P++ G + L + 
Sbjct: 1   MALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLTIH 55

Query: 64  FKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNI 113
           F  DYP  PPK  F   ++HPN+  +           W PA+TI ++LL I  LL +PN 
Sbjct: 56  FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNP 115

Query: 114 KDPAQAEAYTIY 125
            DP   E   IY
Sbjct: 116 DDPLVPEIARIY 127

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 1e-22
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 15/114 (13%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E    + D P G         +   ++  W   + G  GT +E   ++L   F   
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQN---SITQWIVDMEGAPGTLYEGEKFQLLFKFSSR 63

Query: 68  YPSTPPKCKFEPPLF--HPNVYPS----------DWKPAITIKQILLGIQDLLN 109
           YP   P+  F       HP+VY +          DW PA++++ + L I  +L+
Sbjct: 64  YPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 84.0 bits (207), Expect = 2e-22
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 15/128 (11%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +    D   G  A+P  +     NL  ++ +I G + +P+E G ++L +   DD
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61

Query: 68  YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP   PK +F   ++HPN+             +W PA+ I+ +LL IQ LL  PN  DP 
Sbjct: 62  YPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPL 121

Query: 118 QAEAYTIY 125
             +    +
Sbjct: 122 ANDVAEDW 129

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 2e-22
 Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
           +  R+ +E      D P    A P  +     N+  W  +I G  G+ +E G + L + F
Sbjct: 3   SAKRIQKELAEITLDPPPNCSAGPKGD-----NIYEWRSTILGPPGSVYEGGVFFLDITF 57

Query: 65  KDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIK 114
             DYP  PPK  F   ++H N+             +W PA+TI ++LL I  LL + N  
Sbjct: 58  SPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPA 117

Query: 115 DPAQAEAYTIY 125
           DP      T Y
Sbjct: 118 DPLVGSIATQY 128

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 83.3 bits (205), Expect = 3e-22
 Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 15/129 (11%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +  + D       +       S ++ + + +  G  GTP+E G + + +    +
Sbjct: 5   RIMKEIQAVKDDPAAHITLEF---VSES-DIHHLKGTFLGPPGTPYEGGKFVVDIEVPME 60

Query: 68  YPSTPPKCKFEPPLFHPNVYPSD-----------WKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK +F+  ++HPN+               W P IT+K  L+ +Q LL  P   DP
Sbjct: 61  YPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDP 120

Query: 117 AQAEAYTIY 125
             AE    Y
Sbjct: 121 QDAEVAQHY 129

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 83.3 bits (205), Expect = 4e-22
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 16/132 (12%)

Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
           A  R+ +E +  +K  P               N++ W   +      P+   ++ LR+ F
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLS----SDDANVLVWHALL-LPDQPPYHLKAFNLRISF 55

Query: 65  KDDYPSTPPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNI 113
             +YP  PP  KF   ++HPNV  +           +WKP     Q+L  +  L+N PNI
Sbjct: 56  PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNI 115

Query: 114 KDPAQAEAYTIY 125
           ++P + +   + 
Sbjct: 116 REPLRMDLADLL 127

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 2e-21
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 27/127 (21%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
            L  +     K+   GF A      D + +L  WE  I G   T +E G +K  + F  D
Sbjct: 3   LLRRQLAELNKNPVEGFSAGL---IDDN-DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKD 58

Query: 68  YPSTPPKCKFEPPLFHPNVYPS-----------------------DWKPAITIKQILLGI 104
           YP  PPK KF   ++HPNV  +                        W P  T++ I++ +
Sbjct: 59  YPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISV 118

Query: 105 QDLLNEP 111
             +L +P
Sbjct: 119 ISMLADP 125

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 2e-21
 Identities = 42/131 (32%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
              RL +E          G  A P  +     NL  W  +I G  GT +E   YKL + F
Sbjct: 2   VGKRLQQELMTLMMSGDKGISAFPESD-----NLFKWVGTIHGAAGTVYEDLRYKLSLEF 56

Query: 65  KDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIK 114
              YP   P  KF  P +HPNV              W     ++ ILL IQ LL EPNI 
Sbjct: 57  PSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNID 116

Query: 115 DPAQAEAYTIY 125
            P    A  ++
Sbjct: 117 SPLNTHAAELW 127

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 2e-21
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 17/134 (12%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLR 61
           +  A  R+ ++                    D   +L+N++  I       ++SG +   
Sbjct: 1   ASAAQLRIQKDINELNLPKTCDISF-----SDPD-DLLNFKLVI-CPDEGFYKSGKFVFS 53

Query: 62  MIFKDDYPSTPPKCKFEPPLFHPNVY----------PSDWKPAITIKQILLGIQDLLNEP 111
                 YP  PPK K E  ++HPN+             DWKP +TI  I+ G+Q L  EP
Sbjct: 54  FKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEP 113

Query: 112 NIKDPAQAEAYTIY 125
           N +DP   EA  + 
Sbjct: 114 NPEDPLNKEAAEVL 127

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 80.6 bits (198), Expect = 4e-21
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 15/131 (11%)

Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
           +  RL  + K  ++D P G    P ++     N++ WE  I G + TP+E G++KL + F
Sbjct: 4   SRRRLMRDFKKLQEDPPAGVSGAPTED-----NILTWEAIIFGPQETPFEDGTFKLSLEF 58

Query: 65  KDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIK 114
            ++YP+ PP  KF   +FHPNVY             W P   +  IL  IQ LL+EPN  
Sbjct: 59  TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPN 118

Query: 115 DPAQAEAYTIY 125
            PA + A  +Y
Sbjct: 119 SPANSLAAQLY 129

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 79.4 bits (195), Expect = 8e-21
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 16/129 (12%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL +E +  RK     F            NL+ W+  I      P++ G++++ + F  +
Sbjct: 3   RLMKELEEIRKCGMKNFRNIQVDEA----NLLTWQGLI-VPDNPPYDKGAFRIEINFPAE 57

Query: 68  YPSTPPKCKFEPPLFHPNVY-----------PSDWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK  F+  ++HPN+              +WKPA    Q++  +  L+N+P  + P
Sbjct: 58  YPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHP 117

Query: 117 AQAEAYTIY 125
            +A+    Y
Sbjct: 118 LRADLAEEY 126

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 79.0 bits (194), Expect = 1e-20
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 15/135 (11%)

Query: 1   MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL 60
           +    I  + +E      D P G    P +      +L + + +I G +GTP+  G +++
Sbjct: 3   LPPHIIRLVYKEVTTLTADPPDGIKVFPNEE-----DLTDLQVTIEGPEGTPYAGGLFRM 57

Query: 61  RMIFKDDYPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNE 110
           +++   D+P++PPK  F   +FHPNV  +          DW   + I+ +LL I+ LL  
Sbjct: 58  KLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIH 117

Query: 111 PNIKDPAQAEAYTIY 125
           PN +     EA  + 
Sbjct: 118 PNPESALNEEAGRLL 132

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 2e-20
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E +    +   G  A+P ++     N   +   I G + +P+E G++KL +   ++
Sbjct: 6   RIIKETQRLLAEPVPGIKAEPDES-----NARYFHVVIAGPQDSPFEGGTFKLELFLPEE 60

Query: 68  YPSTPPKCKFEPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPA 117
           YP   PK +F   ++HPNV              W PA+ I+ +LL IQ LL+ PN  DP 
Sbjct: 61  YPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL 120

Query: 118 QAEAYTIY 125
             +    +
Sbjct: 121 ANDVAEQW 128

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 76.8 bits (188), Expect = 2e-19
 Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R  +           G  A+         ++  W   I G  GTP+E G + L ++   D
Sbjct: 18  RAHDSEPAATHSTSHGVSAQIVGG-----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPD 72

Query: 68  YPSTPPKCKFEPPLFHPNVY-----------PSDWKPAITIKQILLGIQDLLNEPNIKDP 116
           YP  PPK KF   ++HPN+              +W PA+TI+  LL IQ +L +P   DP
Sbjct: 73  YPYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDP 132

Query: 117 AQAEAYTIY 125
             AE   + 
Sbjct: 133 QDAEVAKMM 141

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 1e-18
 Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 16/129 (12%)

Query: 5   AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIF 64
           A  RL ++    +KD      A+P  +     N++ W   + G + TP+E G Y  ++IF
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHGKLIF 56

Query: 65  KDDYPSTPPKCKFEPPLFHPNV-----------YPSDWKPAITIKQILLGIQDLLNEPNI 113
             ++P  PP      P                 +P  W PA ++  IL G+   + E   
Sbjct: 57  PREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGP 116

Query: 114 KDPAQAEAY 122
              +   + 
Sbjct: 117 TLGSIETSD 125

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 2e-18
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 19/132 (14%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           RL  E      + P G      K+      + +    I G   TP+E G +KL +I  + 
Sbjct: 6   RLKRELHMLATEPPPGITCWQDKD-----QMDDLRAQILGGANTPYEKGVFKLEVIIPER 60

Query: 68  YPSTPPKCKFEPPLFHPNVYPS--------------DWKPAITIKQILLGIQDLLNEPNI 113
           YP  PP+ +F  P++HPN+  +               W+P++ I  +L  IQ L++EPN 
Sbjct: 61  YPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNP 120

Query: 114 KDPAQAEAYTIY 125
            DP  A+  + +
Sbjct: 121 DDPLMADISSEF 132

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 72.0 bits (176), Expect = 3e-18
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 8   RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDD 67
           R+ +E   +  + P         N     N+  W     G + T + +  YKL++IF DD
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLKIIFPDD 56

Query: 68  YPSTPPKCKF-EPPLFHPNVYPS----------DWKPAITIKQILLGIQDLLN 109
           YP  PP   F + P  H +VY +          D+ P+++I  ++L I  +L+
Sbjct: 57  YPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDDYNPSLSISGLVLSIISMLS 109

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 72.8 bits (178), Expect = 4e-18
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 17  RKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCK 76
           R++  +  +    +    S  +  +     G +GTP+E G++ L +    DYP   P   
Sbjct: 4   RREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIG 63

Query: 77  FEPPLFHPNVYPSD-----------WKPAITIKQ-ILLGIQDLLNEPNIKDPAQAEAYTI 124
           F   + HPNV               W P   ++    + +  LL  PN  DP   +A  +
Sbjct: 64  FCNRILHPNVDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHL 123

Query: 125 Y 125
            
Sbjct: 124 L 124

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 7e-13
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 17/93 (18%)

Query: 37  NLMNWECSIPGKKGTPWESGSYKLRMI--FKDDYPSTPPKCKFEPP-----LFHPNVYPS 89
                  ++ G    P+   +Y + +     D YP  PP C  +P          +V  +
Sbjct: 45  GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDAN 104

Query: 90  ----------DWKPAITIKQILLGIQDLLNEPN 112
                        P   +  ++  +  +  +  
Sbjct: 105 GKIYLPYLHEWKHPQSDLLGLIQVMIVVFGDEP 137

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 2e-12
 Identities = 24/150 (16%), Positives = 47/150 (31%), Gaps = 28/150 (18%)

Query: 2   SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGK-KGTPWESGS--- 57
           S  A  RL +E +   +   +       +  +   +L +W   +      +P  S     
Sbjct: 2   SVQASDRLMKELRDIYRSQSYKTGIYSVELIND--SLYDWHVKLQKVDPDSPLHSDLQIL 59

Query: 58  --------YKLRMIFKDDYPSTPPKCKFEPPLFHPNVY------------PSDWKPAITI 97
                     L   FKD++P  PP  +   P+                     W  A +I
Sbjct: 60  KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI 119

Query: 98  KQILLGIQDLLNEPN--IKDPAQAEAYTIY 125
           + +++ I   L +    ++  A    Y + 
Sbjct: 120 ESVIMQINATLVKGKARVQFGANKNQYNLA 149

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (122), Expect = 7e-10
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 29/107 (27%)

Query: 31  NPDG-SLNLMNWECSIPGKKGTPWESGSY---KLRMIFKDDYPSTPPKCKFEPP------ 80
           + DG    L++   +I     T  +  S     + M     YP  PP             
Sbjct: 47  HSDGTPQLLLSIYGTIS----TGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNT 102

Query: 81  -----LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPN 112
                     +  +              A+ +  ++  +  LL+EP 
Sbjct: 103 ISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPP 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	125
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.98
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.73
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.62
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	96.76
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	96.74
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	93.72
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	90.82
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	90.38

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=5.7e-44  Score=242.68  Aligned_cols=120  Identities=33%  Similarity=0.613  Sum_probs=116.6

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      ||++|.+||+||+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p~~~-----n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~   75 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKPVSE-----DMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITI   75 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEECST-----TSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECCC-----cccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccc
Confidence            8999999999999999999999999999987     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC-------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS-------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~-------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ++||||+..             +|+|++|+++||.+|+++|.+|+.++|+|.|||++|
T Consensus        76 i~HpnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly  133 (148)
T d1yrva1          76 PFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARIL  133 (148)
T ss_dssp             CCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHH
T ss_pred             cccCceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            999999953             799999999999999999999999999999999986

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=4.3e-43  Score=239.09  Aligned_cols=120  Identities=30%  Similarity=0.592  Sum_probs=116.4

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      |+..+.|||+||+++|+++++.|+++.+.++     |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+
T Consensus         3 ~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~-----dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (151)
T d1zdna1           3 LPPHIIRLVYKEVTTLTADPPDGIKVFPNEE-----DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTK   77 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHSCCTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEEcCc-----chheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCC
Confidence            6789999999999999999999999999887     99999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            81 LFHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        81 i~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +|||||+..          +|+|++|+.+||.+|+++|.+|+.++|+|.|||++|
T Consensus        78 i~HPnI~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~  132 (151)
T d1zdna1          78 IFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLL  132 (151)
T ss_dssp             CCCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHH
T ss_pred             CCCceecCCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHH
Confidence            999999987          899999999999999999999999999999999875

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=4.5e-43  Score=240.11  Aligned_cols=122  Identities=85%  Similarity=1.566  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      +|.+||++|+++++++++.|+++.|.++.++..|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++||
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            58999999999999999999999999876666699999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            84 PNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        84 Pni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||+.+            +|+|++||.+||.+|+++|.+|++++|+|.|||++|
T Consensus        82 PnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~  135 (156)
T d2uyza1          82 PNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIY  135 (156)
T ss_dssp             TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             ccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHH
Confidence            999987            699999999999999999999999999999999875

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=1e-42  Score=240.00  Aligned_cols=120  Identities=38%  Similarity=0.801  Sum_probs=113.8

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |..|.|||++|+++|++++++|+++.+..++    |+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|++
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~----nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   76 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSEN----NIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSI   76 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSS----CCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCcc----chhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCc
Confidence            5689999999999999999999999986542    899999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+                       .|+|++|+++||.+|+++|.+|+++||+|.+||++|
T Consensus        77 ~HPnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~  143 (164)
T d2ucza_          77 LHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILW  143 (164)
T ss_dssp             SCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHH
T ss_pred             eeceEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            99999876                       399999999999999999999999999999999976

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=1.7e-42  Score=237.26  Aligned_cols=118  Identities=37%  Similarity=0.647  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.+.|||++|+++|+++++.|+++.|.++     |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+++
T Consensus         8 ~~~~kRl~kEl~~l~~~~~~gi~~~p~~~-----dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~   82 (156)
T d2e2ca_           8 HSVSKRLQQELRTLLMSGDPGITAFPDGD-----NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW   82 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHhHCCCCCEEEEECCC-----cccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCc
Confidence            35788999999999999999999999776     9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||+.+          .|+|++||.+||.+|+++|.+|+++||+|.+||++|
T Consensus        83 Hpnv~~~G~icl~~l~~~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~  135 (156)
T d2e2ca_          83 HPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW  135 (156)
T ss_dssp             BTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT
T ss_pred             CCCCCCCCCccccccCCCCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Confidence            9999988          899999999999999999999999999999999987

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=1.3e-42  Score=235.52  Aligned_cols=116  Identities=36%  Similarity=0.620  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      +.|||++|+++|+++++.|+++.+.++     |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~~-----d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   76 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPESD-----NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP   76 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEETT-----EEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCC-----cccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcc
Confidence            679999999999999999999999877     999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+.+          +|+|++|+++||.+|+++|.+|+++||+|.|||++|
T Consensus        77 nV~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~  127 (146)
T d1i7ka_          77 NVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW  127 (146)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT
T ss_pred             cCCCCCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHh
Confidence            99988          899999999999999999999999999999999987

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=3.4e-43  Score=239.79  Aligned_cols=119  Identities=32%  Similarity=0.631  Sum_probs=114.5

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |+.+.|||++|+++|+++++.|+++.+.++     |+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++
T Consensus         1 ~~~~~rRl~~E~~~l~~~~~~g~~~~p~~~-----n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i   75 (152)
T d1jata_           1 AASLPKRIIKETEKLVSDPVPGITAEPHDD-----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKI   75 (152)
T ss_dssp             CCSCCHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCC
T ss_pred             CCcHHHHHHHHHHHHHhCCCCCEEEEEcCC-----ccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCC
Confidence            345789999999999999999999999987     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|+++|.+||.+|+++|.+|++++|+|.|||++|
T Consensus        76 ~HPnI~~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~  129 (152)
T d1jata_          76 YHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDW  129 (152)
T ss_dssp             CBTTBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHH
T ss_pred             CCCcCCCCCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHH
Confidence            99999987          899999999999999999999999999999999876

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=1.9e-42  Score=235.36  Aligned_cols=119  Identities=39%  Similarity=0.776  Sum_probs=114.8

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |+.|.|||++|+++|+++++.|+++.+.++     |+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++
T Consensus         1 ~~pa~rRl~~E~~~l~~~~~~gi~~~p~~~-----n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i   75 (149)
T d1z3da1           1 TTPSRRRLMRDFKKLQEDPPAGVSGAPTED-----NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKM   75 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCEEEEECCC-----chhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcc
Confidence            456889999999999999999999999887     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          .|+|++|+.+||.+|+++|.+|+.++|+|.|||++|
T Consensus        76 ~HPnI~~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~  129 (149)
T d1z3da1          76 FHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLY  129 (149)
T ss_dssp             CCTTBCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHH
T ss_pred             cceeEcCCCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHH
Confidence            99999987          899999999999999999999999999999999875

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=2.2e-42  Score=235.78  Aligned_cols=119  Identities=40%  Similarity=0.773  Sum_probs=115.2

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |+.|.|||++|+++|+++++.|+++.+.++     |++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|++
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~p~~~-----n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i   75 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSASPLPD-----NVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEM   75 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEEECCC-----cHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCC
Confidence            567899999999999999999999999987     999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|++|+.+||.+|+++|.+|+.++|+|.|||++|
T Consensus        76 ~HPnI~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~  129 (153)
T d1ayza_          76 FHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLF  129 (153)
T ss_dssp             CCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHH
T ss_pred             CccCCCCCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence            99999987          799999999999999999999999999999999875

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=3.2e-42  Score=234.00  Aligned_cols=118  Identities=33%  Similarity=0.619  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCcc
Q psy90             3 GIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLF   82 (125)
Q Consensus         3 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~   82 (125)
                      +.+.|||++|+++|+++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~-----n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~   75 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGD-----NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIY   75 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCc-----ccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCc
Confidence            36899999999999999999999999887     9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            83 HPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        83 HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||||+.+          +|+|++|+.+||.+|+++|.+|++++|+|.+||++|
T Consensus        76 HPnv~~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~  128 (148)
T d1y6la_          76 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQY  128 (148)
T ss_dssp             BTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             CceECCCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHH
Confidence            9999986          799999999999999999999999999999999875

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.4e-42  Score=234.72  Aligned_cols=120  Identities=31%  Similarity=0.573  Sum_probs=114.3

Q ss_pred             CChHHHHHHHHHHHHHHhCC---CCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEe
Q psy90             1 MSGIAIGRLSEERKGWRKDH---PFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKF   77 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f   77 (125)
                      ||+.+.+||++|++++++..   ..++.+.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~-----n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f   75 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE-----NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRF   75 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSS-----SSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEE
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCC-----ChhheEeeEecCccccccCCeeEEEEeccccccCCCCccee
Confidence            99999999999999998764   67899999887     99999999999999999999999999999999999999999


Q ss_pred             cCCccCCCCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            78 EPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        78 ~t~i~HPni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      .|++|||||+..           .|+|++||.+||.+|+++|.+|++++|+|.+||++|
T Consensus        76 ~t~i~Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~  134 (154)
T d2bepa1          76 ITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQY  134 (154)
T ss_dssp             SSCCCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             cccCCCCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHH
Confidence            999999999963           799999999999999999999999999999999875

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=6.8e-42  Score=233.63  Aligned_cols=117  Identities=32%  Similarity=0.631  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      ++.+||++|+++|+++++.|+++.+.++     |+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~~~-----~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   76 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQDKD-----QMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYH   76 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEECCc-----chhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCc
Confidence            3689999999999999999999999887     99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC--------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            84 PNVYPS--------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        84 Pni~~~--------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||+.+              .|+|++|+.+||.+|+++|.+|++++|+|.|||++|
T Consensus        77 PnV~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~  132 (154)
T d1yh2a1          77 PNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEF  132 (154)
T ss_dssp             TTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             CCcCCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHH
Confidence            999986              699999999999999999999999999999999875

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=3.6e-42  Score=233.96  Aligned_cols=117  Identities=28%  Similarity=0.576  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      ..|||++|+++|+++++.|+++.+.++.    |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~----~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   77 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSES----DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHP   77 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSS----CSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCC----chhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCC
Confidence            5799999999999999999999865432    899999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+..           +|+|++||.+||.+|+++|.+|+++||+|.|||++|
T Consensus        78 nI~~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~  129 (149)
T d1fzya_          78 NISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHY  129 (149)
T ss_dssp             TBCTTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHH
T ss_pred             cccCCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            99975           799999999999999999999999999999999876

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=6.3e-42  Score=232.13  Aligned_cols=117  Identities=36%  Similarity=0.746  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      +|.|||++|+++|+++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~~~~-----n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   75 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGPVGD-----DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   75 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEECCC-----chhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCce
Confidence            4799999999999999999999999987     99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            84 PNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        84 Pni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||+.+          .|+|++|+.+||.+|+++|.+|++++|+|.|||++|
T Consensus        76 PnV~~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~  127 (147)
T d1z2ua1          76 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY  127 (147)
T ss_dssp             TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             eeECCCCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHH
Confidence            999987          899999999999999999999999999999999875

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=1.5e-41  Score=230.98  Aligned_cols=116  Identities=31%  Similarity=0.632  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      ..|||+||+++|+++++.|+++.+.++     |+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+++||
T Consensus         3 ~~kRl~kEl~~l~~~~~~gi~~~p~~~-----n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   77 (149)
T d1j7db_           3 LPRRIIKETQRLLAEPVPGIKAEPDES-----NARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHP   77 (149)
T ss_dssp             SCHHHHHHHHHHTTSCCTTEEEEECSS-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred             ccHHHHHHHHHHHhCCCCCEEEEECCC-----cccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCc
Confidence            358999999999999999999999887     999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+.+          .|+|++|+.++|.+|+++|.+|++++|+|.|||++|
T Consensus        78 ni~~~G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~  128 (149)
T d1j7db_          78 NVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQW  128 (149)
T ss_dssp             TBCTTCBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHH
T ss_pred             eECCCCcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Confidence            99987          799999999999999999999999999999999875

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=9.3e-41  Score=229.55  Aligned_cols=116  Identities=31%  Similarity=0.578  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCC
Q psy90             6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN   85 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn   85 (125)
                      ..||+||+++|++++++|+++.+.+++    |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~----dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   77 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDN----DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPN   77 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTT----CTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTT
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCC----CceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcc
Confidence            579999999999999999999986542    8999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-----------------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            86 VYPS-----------------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        86 i~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |+.+                       .|+|++++.+||.+|+++|.+|++++|+|.|||++|
T Consensus        78 I~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~  140 (161)
T d1pzva_          78 IDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQ  140 (161)
T ss_dssp             BCTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             cCCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHH
Confidence            9876                       299999999999999999999999999999999875

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=2.5e-40  Score=225.00  Aligned_cols=116  Identities=28%  Similarity=0.562  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             5 AIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      |.+||++|+++|+++++.|+.+.+.++.    |+..|.+.| ||++|||+||.|+++|.||++||++||+|+|.|++|||
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~----~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   75 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDA----NVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHP   75 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSS----CTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCC----ceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcc
Confidence            5789999999999999999999887543    899999866 89999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            85 NVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        85 ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+.+           +|+|++|+.+||.+|+++|.+|++++|+|.+||++|
T Consensus        76 nI~~~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~  127 (150)
T d1wzva1          76 NVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLL  127 (150)
T ss_dssp             TBCTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHH
T ss_pred             eECCCCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence            99987           799999999999999999999999999999999875

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=224.38  Aligned_cols=114  Identities=29%  Similarity=0.613  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCCC
Q psy90             7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV   86 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni   86 (125)
                      |||++|+++|++++..|+.+.+.+++    |+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~~----n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV   76 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDEA----NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNI   76 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCS----SSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCCC----cceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCC
Confidence            89999999999999999987776542    899999998 9999999999999999999999999999999999999999


Q ss_pred             CCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            87 YPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        87 ~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      +.+           .|+|++++.+||.+|+++|.+|++++|+|.+||++|
T Consensus        77 ~~~G~icl~~l~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~  126 (144)
T d1c4zd_          77 DEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEY  126 (144)
T ss_dssp             CTTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             ccCCccccccccCCCCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence            987           699999999999999999999999999999999875

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=4.3e-40  Score=226.22  Aligned_cols=116  Identities=34%  Similarity=0.681  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHh-------------CCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCC
Q psy90             5 AIGRLSEERKGWRK-------------DHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPST   71 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~   71 (125)
                      ..+||+||++++++             ....|+++.+.++     |+++|+++|.||+||||+||+|+|+|.||++||++
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~   76 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGG-----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYN   76 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTS
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCC-----ccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCC
Confidence            57899999999977             3356899999987     99999999999999999999999999999999999


Q ss_pred             CCeeEecCCccCCCCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            72 PPKCKFEPPLFHPNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        72 pP~v~f~t~i~HPni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      ||+|+|.|+++||||+..           .|+|++||.+||.+|+++|.+|++++|+|.|||++|
T Consensus        77 pP~V~F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~  141 (161)
T d2f4za1          77 PPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM  141 (161)
T ss_dssp             CCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHH
T ss_pred             CcEEEecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHH
Confidence            999999999999998664           799999999999999999999999999999999875

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=3.8e-39  Score=216.68  Aligned_cols=118  Identities=26%  Similarity=0.363  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      ...+||+||+++++|+++.++.+.+.++.++. |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         5 ~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~-nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           5 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDM-TLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSSEEEEESSTTCT-TCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             chhHHHHHHHHHHhhCCCCCceeeeccCCCcc-cccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            35789999999999999998877776653332 89999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-------------CCCCcCCHHHHHHHHHHhhcCC-CCCChhcHHHH
Q psy90            84 PNVYPS-------------DWKPAITIKQILLGIQDLLNEP-NIKDPAQAEAY  122 (125)
Q Consensus        84 Pni~~~-------------~W~p~~tl~~vl~~i~~ll~~p-~~~~p~n~~aa  122 (125)
                      |||+..             +|+|++||++||.+|+++|.+| |.++|+|+|.+
T Consensus        84 pnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~~  136 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  136 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             ccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCcC
Confidence            999876             8999999999999999999987 78899999943

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=222.50  Aligned_cols=117  Identities=29%  Similarity=0.500  Sum_probs=106.3

Q ss_pred             ChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             2 SGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      |+.|.+||+||+++|++.+  ++.+...++.    |+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|++
T Consensus         1 ~~~a~~Rl~kEl~~l~~~~--~~~i~~~~~~----~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i   73 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLPK--TCDISFSDPD----DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV   73 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCCT--TEEEECSSTT----CTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred             CCHHHHHHHHHHHHhCCCC--CCcEEEcCCC----cceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccC
Confidence            5789999999999997544  5555443321    999999999 89999999999999999999999999999999999


Q ss_pred             cCCCCCCC----------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            82 FHPNVYPS----------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        82 ~HPni~~~----------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||||+.+          +|+|++|+++||.+|+++|.+|+++||+|.|||++|
T Consensus        74 ~HPnv~~~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~  127 (157)
T d1y8xa1          74 YHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVL  127 (157)
T ss_dssp             CBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHH
T ss_pred             CCccccccceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHH
Confidence            99999988          899999999999999999999999999999999875

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-38  Score=205.38  Aligned_cols=105  Identities=28%  Similarity=0.587  Sum_probs=96.2

Q ss_pred             CChHHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCC
Q psy90             1 MSGIAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPP   80 (125)
Q Consensus         1 ms~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~   80 (125)
                      |++ +.|||+||++++++++++|+++.+..++|   |+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+
T Consensus         1 m~~-~~kRL~kEl~~l~~~~~~~~~~~~~~~~~---~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~   76 (117)
T d2a7la1           1 MAS-MQKRLQKELLALQNDPPPGMTLNEKSVQN---SITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   76 (117)
T ss_dssp             GTT-SCHHHHHHHHHHHHSCCTTCCCCTTCCCC---SCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             CCc-HHHHHHHHHHHHhhCCCCCeEEEEecCCC---CceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCC
Confidence            666 56999999999999999999887654322   89999999999999999999999999999999999999999998


Q ss_pred             c--cCCCCCCC----------CCCCcCCHHHHHHHHHHhhc
Q psy90            81 L--FHPNVYPS----------DWKPAITIKQILLGIQDLLN  109 (125)
Q Consensus        81 i--~HPni~~~----------~W~p~~tl~~vl~~i~~ll~  109 (125)
                      +  |||||+.+          +|+|++|+++||.+|+++|+
T Consensus        77 ~~~~Hpnv~~~G~iCl~~l~~~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          77 NIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             CCCCBTTBCTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred             CccccccCcCCCeEEeecCcCCCCCcCcHHHHHHHHHHHhC
Confidence            7  99999987          79999999999999999984

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=9.7e-38  Score=208.94  Aligned_cols=119  Identities=27%  Similarity=0.408  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHhCCC-CCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             5 AIGRLSEERKGWRKDHP-FGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         5 ~~~Rl~~E~~~l~~~~~-~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      ..+||+||+++++|+.+ .+++....++.|  .|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         5 ~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd--~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (136)
T d1jatb_           5 RNFRLLEELEKGEKGFGPESCSYGLADSDD--ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   82 (136)
T ss_dssp             HHHHHHHHHHHHHC----CCEEEEESSTTC--TTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             hHHHHHHHHHHHhccCCCCcEEEeecCCCC--CceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccc
Confidence            57899999999999864 456555554422  279999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC------------CCCCcCCHHHHHHHHHHhhcCCCCCChhcHHHHhhC
Q psy90            84 PNVYPS------------DWKPAITIKQILLGIQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        84 Pni~~~------------~W~p~~tl~~vl~~i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |||+.+            +|+|++||++||.+|+++|.+|+..+..++++++.|
T Consensus        83 pnV~~~~G~icl~~l~~~~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g~~y  136 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  136 (136)
T ss_dssp             TTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             cccccCCCeEECCCCcccCcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCCCcC
Confidence            999865            799999999999999999999998888888888776

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=9.9e-37  Score=201.56  Aligned_cols=101  Identities=33%  Similarity=0.611  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCCC
Q psy90             7 GRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPNV   86 (125)
Q Consensus         7 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPni   86 (125)
                      -||+||++++++++++|+++.+.+++    |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++||||
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~----dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni   77 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDN----DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV   77 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTT----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCC----CceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCcccc
Confidence            58999999999999999999886542    89999999999999999999999999999999999999999999999999


Q ss_pred             CCC-----------------------CCCCcCCHHHHHHHHHHhhcCC
Q psy90            87 YPS-----------------------DWKPAITIKQILLGIQDLLNEP  111 (125)
Q Consensus        87 ~~~-----------------------~W~p~~tl~~vl~~i~~ll~~p  111 (125)
                      +.+                       +|+|++|+++||++|+++|.+|
T Consensus        78 ~~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          78 DKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             CTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            997                       3999999999999999999887

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=6.2e-37  Score=209.59  Aligned_cols=107  Identities=26%  Similarity=0.473  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccC
Q psy90             4 IAIGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFH   83 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H   83 (125)
                      +|.|||++|+++++++++.|+++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~-----n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~   75 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPS-----NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGR   75 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETT-----EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSS
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCc-----ccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcc
Confidence            3799999999999999999999999887     99999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC-----------CCCCcCCHHHHHHHHHHhhcCCCCCC
Q psy90            84 PNVYPS-----------DWKPAITIKQILLGIQDLLNEPNIKD  115 (125)
Q Consensus        84 Pni~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~~~  115 (125)
                      +|++..           +|+|++||++||.+|+++|.+|+++.
T Consensus        76 ~~~~g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~  118 (157)
T d2f4wa1          76 FKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL  118 (157)
T ss_dssp             BCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred             cCCCCCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCC
Confidence            999877           69999999999999999999998764

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=6.9e-37  Score=209.53  Aligned_cols=111  Identities=25%  Similarity=0.468  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCCC
Q psy90             6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHPN   85 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn   85 (125)
                      .|||++|+++|.+++..   +.+. +     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~~-d-----~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPn   72 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYPS-D-----TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPN   72 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEEC-S-----STTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHhcCCCc---CCCC-C-----CceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCC
Confidence            58999999999987753   4553 3     9999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-----------CCCCcCCHHHHHHH-HHHhhcCCCCCChhcHHHHhhC
Q psy90            86 VYPS-----------DWKPAITIKQILLG-IQDLLNEPNIKDPAQAEAYTIY  125 (125)
Q Consensus        86 i~~~-----------~W~p~~tl~~vl~~-i~~ll~~p~~~~p~n~~aa~~y  125 (125)
                      |+..           +|+|++|+.++|.. |+.||.+|++++|+|.|||++|
T Consensus        73 I~~~~G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~  124 (158)
T d1yf9a1          73 VDERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLL  124 (158)
T ss_dssp             BCTTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHH
T ss_pred             CccCcccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence            9763           89999999999965 6778999999999999999976

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=1.1e-35  Score=192.29  Aligned_cols=97  Identities=30%  Similarity=0.585  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc-cCCCC
Q psy90             8 RLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL-FHPNV   86 (125)
Q Consensus         8 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~HPni   86 (125)
                      ||+||+++++++++.|+++.+.++     |+++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~-----~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni   76 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPN-----NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV   76 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTT-----CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCC-----cccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceE
Confidence            999999999999999999998877     999999999999999999999999999999999999999999986 89999


Q ss_pred             CCC----------CCCCcCCHHHHHHHHHHhhc
Q psy90            87 YPS----------DWKPAITIKQILLGIQDLLN  109 (125)
Q Consensus        87 ~~~----------~W~p~~tl~~vl~~i~~ll~  109 (125)
                      +.+          +|+|++|+++||.+|+++|+
T Consensus        77 ~~~G~iCl~il~~~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          77 YSNGDICLSLLGDDYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             CTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC
T ss_pred             CCCCeEEeecccCCCCccCCHHHHHHHHHHHhC
Confidence            998          89999999999999999984

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.6e-33  Score=192.35  Aligned_cols=116  Identities=22%  Similarity=0.409  Sum_probs=99.6

Q ss_pred             ChHHHHHHHHHHHHHHhCCC--CC-eEEeecCCCCCCCCcceeEEEecC-CCCCCCCCCE-----------EEEEEEeCC
Q psy90             2 SGIAIGRLSEERKGWRKDHP--FG-FVAKPAKNPDGSLNLMNWECSIPG-KKGTPWESGS-----------YKLRMIFKD   66 (125)
Q Consensus         2 s~~~~~Rl~~E~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~w~~~i~G-p~~t~y~gg~-----------f~~~i~fp~   66 (125)
                      |..|.+||+||++++++++.  .| +.+.+.++     |+++|++.|.| |++|||+||.           |+++|.||+
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~d-----nl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~   76 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELIND-----SLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD   76 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETT-----EEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCC-----cccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCC
Confidence            67899999999999998774  23 55666666     99999999999 8999999876           999999999


Q ss_pred             CCCCCCCeeEecCCccCCCC-CCC-----------CCCCcCCHHHHHHHHHHhhcCCCC--CChhcHHHH
Q psy90            67 DYPSTPPKCKFEPPLFHPNV-YPS-----------DWKPAITIKQILLGIQDLLNEPNI--KDPAQAEAY  122 (125)
Q Consensus        67 ~yP~~pP~v~f~t~i~HPni-~~~-----------~W~p~~tl~~vl~~i~~ll~~p~~--~~p~n~~aa  122 (125)
                      +||++||+|+|+|+++|||+ +.+           +|+|++||++||.+|+++|.+|++  +.+.|.+++
T Consensus        77 ~YP~~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y  146 (162)
T d1zuoa1          77 NFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQY  146 (162)
T ss_dssp             TTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCC
T ss_pred             chhhhcceEEEEEEeeccccccCCceeecccccCCCCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHH
Confidence            99999999999999999984 543           699999999999999999988765  455555543

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.1e-18  Score=112.71  Aligned_cols=98  Identities=15%  Similarity=0.250  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhCCC---CCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCEEEE--EEEeCCCCCCCCCeeEecCC--
Q psy90             8 RLSEERKGWRKDHP---FGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGSYKL--RMIFKDDYPSTPPKCKFEPP--   80 (125)
Q Consensus         8 Rl~~E~~~l~~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~f~~--~i~fp~~yP~~pP~v~f~t~--   80 (125)
                      +..+|+.++.+.-.   ++..+....+     +..+|.+.|.|+.+++|+||.|.+  .|.||.+||++||.|.|.+.  
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~d-----g~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~   92 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFND-----GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSS   92 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTT-----SCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTT
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCC-----CCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCC
Confidence            45667777766543   4555566655     789999999999999999999999  55589999999999988754  


Q ss_pred             ---ccCCCCCCC---------CCC-CcCCHHHHHHHHHHhhcC
Q psy90            81 ---LFHPNVYPS---------DWK-PAITIKQILLGIQDLLNE  110 (125)
Q Consensus        81 ---i~HPni~~~---------~W~-p~~tl~~vl~~i~~ll~~  110 (125)
                         ++||||+.+         +|. +.+++.+++..|+++|.+
T Consensus        93 ~~~~~h~~V~~~G~V~lp~L~~W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          93 MTIKTGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             CEECCSSSBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHHH
T ss_pred             ccccCCCeECCCCCCcchhhcCCCcccccHHHHHHHHHHHhCC
Confidence               689999998         675 578999999999999986

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=2.5e-15  Score=101.01  Aligned_cols=104  Identities=15%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhCCCC---CeEEeecCCCCCCCCcceeEEEecCCCCCCCCCCE---EEEEEEeCCCCCCCCCeeEecC
Q psy90             6 IGRLSEERKGWRKDHPF---GFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESGS---YKLRMIFKDDYPSTPPKCKFEP   79 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~---~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg~---f~~~i~fp~~yP~~pP~v~f~t   79 (125)
                      .+|+.+|+.++.++-+.   .......++     ...++.+.+.|.-..+|+|+.   |.+.|-||++||+.||.++|.+
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~d-----g~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~   95 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSD-----GTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINL   95 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTT-----SCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECC
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCC-----CCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEec
Confidence            46788888888776531   222333333     566778889999999999996   6788889999999999999976


Q ss_pred             C-----------ccCCCCCCC---------CC-CCcCCHHHHHHHHHHhhcCCCCC
Q psy90            80 P-----------LFHPNVYPS---------DW-KPAITIKQILLGIQDLLNEPNIK  114 (125)
Q Consensus        80 ~-----------i~HPni~~~---------~W-~p~~tl~~vl~~i~~ll~~p~~~  114 (125)
                      +           ++||||+.+         +| .++.+|.+++..|+.+|.++..|
T Consensus        96 ~~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_          96 ENFDMNTISSSLPIQEYIDSNGWIALPILHCWDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             TTCCSCC----CGGGGGBCTTSCBCCHHHHSCCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             CcccccCCCcccccCCCCCCCCcEehHHhcCCCCccCcHHHHHHHHHHHhcCCCCC
Confidence            5           579999998         55 57999999999999999987543

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.0045  Score=38.92  Aligned_cols=106  Identities=12%  Similarity=0.018  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHhCCCCCeEEeecCCCCCCCCcceeEEEecCCC-CCCCCCCEEEEEEEeCCCCCCCCCeeEecCCccCC
Q psy90             6 IGRLSEERKGWRKDHPFGFVAKPAKNPDGSLNLMNWECSIPGKK-GTPWESGSYKLRMIFKDDYPSTPPKCKFEPPLFHP   84 (125)
Q Consensus         6 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~-~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i~HP   84 (125)
                      ..+-..|+..|...-+..+..................+.+.... +.......+.+.+.||.+||..+|.+.+...-+.+
T Consensus        12 ~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~~~~l~   91 (137)
T d1ukxa_          12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNAKGLS   91 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEEESSS
T ss_pred             HHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEecCCCCC
Confidence            44667788888876666665543322111111223445554222 22234456999999999999999999886543322


Q ss_pred             CCCCC-----------CCCCcCCHHHHHHHHHHhhcCC
Q psy90            85 NVYPS-----------DWKPAITIKQILLGIQDLLNEP  111 (125)
Q Consensus        85 ni~~~-----------~W~p~~tl~~vl~~i~~ll~~p  111 (125)
                      .....           ...-..-+.+++..++..|.+-
T Consensus        92 ~~~~~~L~~~l~~~~~e~~G~~mif~lv~~lqe~L~e~  129 (137)
T d1ukxa_          92 NESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEH  129 (137)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEeHHHHHHHHHHHHHHh
Confidence            11111           1122345777777777777643

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0063  Score=37.05  Aligned_cols=68  Identities=10%  Similarity=0.071  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhCCCCCeEEeecCCCCCCCCcc--eeEEEecCCC--CCCCCCCEEEEEEEeCCCCCCCCCeeEecCCc
Q psy90             9 LSEERKGWRKDHPFGFVAKPAKNPDGSLNLM--NWECSIPGKK--GTPWESGSYKLRMIFKDDYPSTPPKCKFEPPL   81 (125)
Q Consensus         9 l~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~--~w~~~i~Gp~--~t~y~gg~f~~~i~fp~~yP~~pP~v~f~t~i   81 (125)
                      +..|+..|+..-+..+......+     ...  ...+.+....  +..=......+.+.+|.+||..+|.+.+.+.-
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~~   77 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNG-----RTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPR   77 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTT-----SSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCC-----CCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeeccC
Confidence            57799999987777776543332     333  3444444211  11112356889999999999999999887543

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.0093  Score=38.01  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHh-------CCCCCeEEeecCCCCCCCCcceeEEEecCCCCCCCCCC--EEEEEEEeCCCCCCCCCe
Q psy90             4 IAIGRLSEERKGWRK-------DHPFGFVAKPAKNPDGSLNLMNWECSIPGKKGTPWESG--SYKLRMIFKDDYPSTPPK   74 (125)
Q Consensus         4 ~~~~Rl~~E~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~t~y~gg--~f~~~i~fp~~yP~~pP~   74 (125)
                      ....||..|++.|-+       +....+.+....      +=+.|...-.    ..+.--  .|.+++.+|..||..||.
T Consensus        25 ~W~~RLKEEy~aLI~Yv~nNK~~dndWF~lesn~------~GT~W~GkCW----yihnl~kYeFd~eFdIP~tYP~t~pE   94 (162)
T d2in1a1          25 LWVQRLKEEYQSLIRYVENNKNADNDWFRLESNK------EGTRWFGKCW----YIHDLLKYEFDIEFDIPITYPTTAPE   94 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECT------TSSEEEEEEE----EEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeEEeccCC------CCCeeeceee----EEEeeeEEEEEEEeccCCCCCCCCcc
Confidence            357899999998753       233455554322      3345543322    011222  355666779999999999


Q ss_pred             eEe
Q psy90            75 CKF   77 (125)
Q Consensus        75 v~f   77 (125)
                      |..
T Consensus        95 i~l   97 (162)
T d2in1a1          95 IAV   97 (162)
T ss_dssp             CBC
T ss_pred             eec
Confidence            975

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.1  Score=32.11  Aligned_cols=26  Identities=19%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             CCCEEEEEEEeCCCCCCCCCeeEecC
Q psy90            54 ESGSYKLRMIFKDDYPSTPPKCKFEP   79 (125)
Q Consensus        54 ~gg~f~~~i~fp~~yP~~pP~v~f~t   79 (125)
                      ......+.+.+|.+||..+|.|...+
T Consensus        64 ~~~~l~L~~~lP~~YP~~~P~i~l~~   89 (140)
T d2daxa1          64 KMAMFSLACILPFKYPAVLPEITVRS   89 (140)
T ss_dssp             CEEEEEEEEEECSSTTSSCCCCEEEC
T ss_pred             cCceEEEEEEecCcCCCcCCceeccC
Confidence            34568899999999999999997754

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=0.15  Score=31.51  Aligned_cols=44  Identities=9%  Similarity=0.027  Sum_probs=30.0

Q ss_pred             CEEEEEEEeCCCCCCCCCeeEecCCccCCCCCCCCCCCcCCHHHHHHHHHHhhc
Q psy90            56 GSYKLRMIFKDDYPSTPPKCKFEPPLFHPNVYPSDWKPAITIKQILLGIQDLLN  109 (125)
Q Consensus        56 g~f~~~i~fp~~yP~~pP~v~f~t~i~HPni~~~~W~p~~tl~~vl~~i~~ll~  109 (125)
                      -.+.+.+.+|++||..+|.|...++          |-+......+...|...+.
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~~----------~l~~~~~~~l~~~l~~~~~  111 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRSS----------ELDRHQQLLLNKGLTSYIG  111 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEECS----------SSCHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEeCCCCCCCCCCceeecc----------ccCHHHHHHHHHHHHHHHH
Confidence            3578889999999999999976532          3334445555555555554