Psyllid ID: psy9113
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | 2.2.26 [Sep-21-2011] | |||||||
| Q9I558 | 651 | Acetyl-coenzyme A synthet | yes | N/A | 0.565 | 0.244 | 0.390 | 3e-40 | |
| Q9VP61 | 670 | Acetyl-coenzyme A synthet | yes | N/A | 0.701 | 0.294 | 0.397 | 1e-36 | |
| Q93LL2 | 337 | Acetyl-coenzyme A synthet | N/A | N/A | 0.565 | 0.471 | 0.398 | 5e-36 | |
| A0LG91 | 650 | Acetyl-coenzyme A synthet | yes | N/A | 0.565 | 0.244 | 0.372 | 4e-35 | |
| Q89WV5 | 648 | Acetyl-coenzyme A synthet | yes | N/A | 0.565 | 0.245 | 0.363 | 4e-34 | |
| A1S7C8 | 650 | Acetyl-coenzyme A synthet | yes | N/A | 0.558 | 0.241 | 0.376 | 5e-34 | |
| A0L576 | 644 | Acetyl-coenzyme A synthet | yes | N/A | 0.565 | 0.246 | 0.380 | 1e-33 | |
| A8G8G7 | 652 | Acetyl-coenzyme A synthet | yes | N/A | 0.565 | 0.243 | 0.390 | 2e-32 | |
| Q0VSR6 | 645 | Acetyl-coenzyme A synthet | yes | N/A | 0.565 | 0.246 | 0.380 | 3e-32 | |
| B8EPJ0 | 645 | Acetyl-coenzyme A synthet | yes | N/A | 0.775 | 0.337 | 0.367 | 4e-32 |
| >sp|Q9I558|ACSA1_PSEAE Acetyl-coenzyme A synthetase 1 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=acsA1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 165 bits (418), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D+ +TY++L E+VCK AN L+ + V +GD V IY+PM+ E VV MLAC RIGA+
Sbjct: 99 GDDPADHQEITYRQLHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAI 158
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 159 HSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGGKRTPLKANVDDALTNPETSSVQKII 218
Query: 130 KLRKV-------------------VTGSTGKP---------------------KGVLHTT 149
++ V GST P KGVLHTT
Sbjct: 219 VCKRTGAEIKWNQHRDVWYDDLMKVAGSTCAPKEMGAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YA+ TH+ VFDY+PG++YWCTAD+GW+TGHTY+VYGPLANGAT+++
Sbjct: 279 GGYLVYASLTHERVFDYRPGEVYWCTADIGWVTGHTYIVYGPLANGATTILFE 331
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Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q9VP61|ACSA_DROME Acetyl-coenzyme A synthetase OS=Drosophila melanogaster GN=AcCoAS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/249 (39%), Positives = 131/249 (52%), Gaps = 52/249 (20%)
Query: 44 GNDPDDYSR-LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
GN PDDYSR LTY+KLLEEVC+ ANVLK G++KGDRV+IY+PM+LE+ + MLACARIGA
Sbjct: 106 GNHPDDYSRGLTYRKLLEEVCRFANVLKDHGIRKGDRVSIYMPMILELPIAMLACARIGA 165
Query: 103 VHSIVVSKCSGDDMS------------TVPANSERERKLKLRKVVTGSTGKPKGVLHTTG 150
VHSIV + S D ++ T E+ L L+ + + K + + H+
Sbjct: 166 VHSIVFAGFSPDSLAERMFDCKAKLLITADGAWRGEKPLYLKALCDTALEKVEEMGHSVE 225
Query: 151 GYLLYAATT------------------------HKYVFDYKPG------------DIYWC 174
++ + H+ + D +P + +
Sbjct: 226 KCIVVSHLKRVTPCQPDHVEEEIPWTDDRDYWWHEEMEDKEPACYPEWMDAEDPLFMLYT 285
Query: 175 TADVGWITGHTYVVYGPLANGATSVIVSL---PGEIYWCTADVGWITGHTYVVYGPLANG 231
+ G G + G L AT+ + PG+IYWCTADVGWITGHTYVVYGPLANG
Sbjct: 286 SGSTGKPKGVLHTTAGYLLYAATTFKIVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 345
Query: 232 ATSVIVSET 240
ATSVI T
Sbjct: 346 ATSVIFEGT 354
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Activates acetate so that it can be used for lipid synthesis or for energy generation. Drosophila melanogaster (taxid: 7227) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q93LL2|ACSA_NOSLI Acetyl-coenzyme A synthetase (Fragment) OS=Nostoc linckia GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 122/231 (52%), Gaps = 72/231 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP+ S++TY++L VC+ AN ++ GVQKGDRV IYLPM+ E V MLACARIGAV
Sbjct: 39 GDDPNADSKVTYRELHARVCQLANAMRGMGVQKGDRVCIYLPMIEEAAVAMLACARIGAV 98
Query: 104 HSIVVSKCSGDDMST----------------------VPANSERERKLK----LRKVVTG 137
HSIV S D +S+ VP + LK +R V+
Sbjct: 99 HSIVFGGFSPDSLSSRIQDSDCVLLITADEGRRGGRKVPLKVNADEALKTCPSIRHVIVA 158
Query: 138 ---------------------------STGKPKG------VLHTTG-------------G 151
ST +P G +L+T+G G
Sbjct: 159 KNTGGNVAMQEGRDHWWADACDNQPKTSTPEPMGAEDPLFILYTSGSTGKPKGVLHTTGG 218
Query: 152 YLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
YL++A+ TH+ VFDY+ G+IYWCTADVGW+TGHTY+VYGPLANGAT+++
Sbjct: 219 YLVWASFTHQNVFDYRDGEIYWCTADVGWVTGHTYIVYGPLANGATTLMFE 269
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Nostoc linckia (taxid: 92942) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A0LG91|ACSA_SYNFM Acetyl-coenzyme A synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 119/231 (51%), Gaps = 72/231 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP +TY++L ++VC+ ANVLK++G++KGDR IYLPM+ E+ V MLACARIG V
Sbjct: 97 GDDPKVSKYITYRELHDQVCRFANVLKAQGLKKGDRATIYLPMIPELAVAMLACARIGVV 156
Query: 104 HSIVVSKCSGDDMS----------------------TVPANSERERKLK-----LRKVVT 136
HSIV + S + ++ +P E LK + +V
Sbjct: 157 HSIVFAGFSPESLAGRILDCGGKVVITADEGLRGGKPIPLKENTEEALKKCPDVQKVIVV 216
Query: 137 GSTG--------------------------------KPKGVLHTTG-------------G 151
TG P +L+T+G G
Sbjct: 217 KHTGGKVPVVPGRDVDWTEAIKAASPDCPPEVMDAEDPLFILYTSGSTGKPKGVLHTTGG 276
Query: 152 YLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
YL+Y A +H+YVFDY GDIYWCTAD+GW+TGH+Y++YGPLANGAT+V+
Sbjct: 277 YLVYTALSHQYVFDYHDGDIYWCTADIGWVTGHSYIIYGPLANGATTVMFE 327
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Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q89WV5|ACSA_BRAJA Acetyl-coenzyme A synthetase OS=Bradyrhizobium japonicum (strain USDA 110) GN=acsA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 118/231 (51%), Gaps = 72/231 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP +TYK+L +EVC+ AN+L+++ V+KGDRV IYLPM+ E MLACARIGA+
Sbjct: 98 GDDPSQSRHITYKELHDEVCRMANILRTRNVKKGDRVTIYLPMIPEAAYAMLACARIGAI 157
Query: 104 HSIVVSKCSGDDMSTVPANSERE------------RKLKLRKVVTGSTGKPKG-----VL 146
HS+V + S D ++ + + + +K+ L+ V + K G V+
Sbjct: 158 HSVVFAGFSPDSLAQRINDCQSKVIITADEGLRGGKKVPLKANVDAALAKADGVDWVVVV 217
Query: 147 HTTGG----------------------------------YLLY----------------- 155
TGG ++LY
Sbjct: 218 KRTGGKIDMNPTRDLWYHEAAAMVTTECPVEHMHAEDPLFILYTSGSTGQPKGVLHTSAG 277
Query: 156 ----AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
AA TH+YVFDY GDIYWCTADVGW+TGH+Y++YGPLANGAT+++
Sbjct: 278 YLVYAAMTHQYVFDYHDGDIYWCTADVGWVTGHSYILYGPLANGATTLMFE 328
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Bradyrhizobium japonicum (strain USDA 110) (taxid: 224911) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A1S7C8|ACSA_SHEAM Acetyl-coenzyme A synthetase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 120/231 (51%), Gaps = 74/231 (32%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D + ++TY++L EVC+ AN LK++GV++GD V IY+PMV+E V MLACARIGAV
Sbjct: 99 GDDASEQRKVTYRELHAEVCQFANALKAEGVKRGDVVTIYMPMVVEATVAMLACARIGAV 158
Query: 104 HSIVVSKCSGDDMSTVPANSERE------------RKLKLRKVVTGSTGKPKG------- 144
HS+V S D +++ + + + RK+ L+ + + +P
Sbjct: 159 HSVVFGGFSPDSIASRVIDGKSKLLITADEGVRGGRKIPLKGNIDEALNRPDVTTVETVI 218
Query: 145 VLHTTGG----------------------------------YLLY--------------- 155
VL TGG +LLY
Sbjct: 219 VLKRTGGAVNWVEGRDKWWHQVTDGAATECAVEEMGAEDPLFLLYTSGSTGNPKGVLHTT 278
Query: 156 ------AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
A+ TH+YVFDYKPG++YWCTADVGWITGH+Y+VYGPLANGAT +I
Sbjct: 279 GGYLVYASMTHEYVFDYKPGEVYWCTADVGWITGHSYMVYGPLANGATILI 329
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Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) (taxid: 326297) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A0L576|ACSA_MAGSM Acetyl-coenzyme A synthetase OS=Magnetococcus sp. (strain MC-1) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 116/231 (50%), Gaps = 72/231 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G++P ++TY++L V K AN LK++GV+KGDRV IY+PM+ E V MLAC RIGAV
Sbjct: 98 GDNPAADRKITYRELSALVNKFANALKARGVKKGDRVCIYMPMIPEAAVAMLACTRIGAV 157
Query: 104 HSIVVSKCSGDDMSTVPANSE------------RERKLKLRKVVTGSTGK---------- 141
HSIV S D + ++E +K+ LRK V + +
Sbjct: 158 HSIVFGGFSPDALRDRIIDAECRVVITADGGMRGSKKIPLRKNVETALAQCPNVHTCFVV 217
Query: 142 -------------------------------------PKGVLHTTG-------------G 151
P VL+T+G G
Sbjct: 218 QDTQLEIEWTEGRDVWYHEAIAAASADCPPEEMDAEDPLFVLYTSGSTGKPKGVLHTTGG 277
Query: 152 YLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
YLLYA+ TH+Y+FDY DIYWCTADVGW+TGHTY+VYGPLANGAT+++
Sbjct: 278 YLLYASITHQYIFDYHEDDIYWCTADVGWVTGHTYIVYGPLANGATTLMFE 328
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Magnetococcus sp. (strain MC-1) (taxid: 156889) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A8G8G7|ACSA_SERP5 Acetyl-coenzyme A synthetase OS=Serratia proteamaculans (strain 568) GN=acs PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP ++TYK+L +VC+ ANVLK GV+KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDPTQSKQVTYKQLHHDVCQFANVLKKLGVKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIVVSKCSGDDMS--TVPANSE----------RERKLKLRK-----------------V 134
HS++ S + ++ + +NS+ R + L+K V
Sbjct: 159 HSVIFGGFSPEAVAGRIIDSNSKLVITADEGLRAGRAVPLKKNVDDALKNPGVKSITNVV 218
Query: 135 VTGSTGKP----KG----------------------------VLHTTG------------ 150
V TGKP +G +L+T+G
Sbjct: 219 VFQRTGKPGYWQEGRDLWWHELTAGVSADCPPEEMNAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 151 -GYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GYL+YAA T KYVFDY GD+YWCTADVGW+TGH+Y++YGPLA GA +++
Sbjct: 279 GGYLVYAAMTFKYVFDYHDGDVYWCTADVGWVTGHSYLLYGPLACGAITLMFE 331
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Enables the cell to use acetate during aerobic growth to generate energy via the TCA cycle, and biosynthetic compounds via the glyoxylate shunt. Acetylates CheY, the response regulator involved in flagellar movement and chemotaxis. Serratia proteamaculans (strain 568) (taxid: 399741) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q0VSR6|ACSA_ALCBS Acetyl-coenzyme A synthetase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 115/231 (49%), Gaps = 72/231 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAI--------------------- 82
G++PD ++Y++L EEV K NVLK++GV+KGDRV I
Sbjct: 98 GDEPDQDKHISYQQLFEEVSKFGNVLKNRGVKKGDRVVIYMPMIPEAAYAMLACARIGAI 157
Query: 83 -------YLPMVL-EIVVTMLACARIGA-------------------------VHSIVVS 109
+ P L + ++ ACA I A VH+ +
Sbjct: 158 HSVVFGGFSPEALKDRILNAEACALITADEGVRGGKTIPLKVNADKALDGIDCVHTCLTV 217
Query: 110 KCSGDD--------------MSTVPANSERE----RKLKLRKVVTGSTGKPKGVLHTTGG 151
K +G D M+ ++ E E +GSTGKPKGV+HTT G
Sbjct: 218 KRTGGDVDWQAPRDVWYHEAMADASSDCEPEWVEAEDPLFTLYTSGSTGKPKGVVHTTAG 277
Query: 152 YLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
YLL A THKYVFDY+ GDIYWCTADVGWITGH+Y+VYGPLANGAT+++
Sbjct: 278 YLLNTALTHKYVFDYQDGDIYWCTADVGWITGHSYIVYGPLANGATTLMFE 328
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Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) (taxid: 393595) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|B8EPJ0|ACSA_METSB Acetyl-coenzyme A synthetase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 135/272 (49%), Gaps = 54/272 (19%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP++ +TYK+L EEVC+ ANVLKS G+ KGD V IYLPM+ E MLACARIGA+
Sbjct: 98 GDDPNESKHITYKQLHEEVCRLANVLKSYGISKGDTVTIYLPMIPEAAYAMLACARIGAI 157
Query: 104 HSIVVSKCSGDDMS------------TVPANSERERKLKLRKVVTGSTGKPKGVLHT--- 148
HSIV S D + T RK+ L+ + K G++ T
Sbjct: 158 HSIVFGGFSADSLGGRIEGCKSKLIITADEGYRGGRKVPLKVNADAAIKKVDGIVETMIV 217
Query: 149 ---TGGYLL--------YAATTHKYVFD--------YKPGDIYWCTADVGWITG--HT-- 185
TGG + Y K D P I + + G G H+
Sbjct: 218 VRRTGGKVAWTEGRDVWYDEALAKASPDCPAAEMNAEDPLFILFTSGSTGAPKGVVHSTG 277
Query: 186 -YVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVI-------- 236
Y+V+ + + V PGE+YWCTADVGW+TGH+Y+VYGPLANGAT+++
Sbjct: 278 GYLVWASMTH--QYVFDYRPGEVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPSYP 335
Query: 237 -VSETLKMLNTNFFCILYT----ISSLMWAGS 263
+S +++ + I YT I SLM AG
Sbjct: 336 TISRFWDVVDKHQVNIFYTAPTAIRSLMGAGD 367
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Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) (taxid: 395965) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| 418583649 | 651 | acetyl-CoA synthetase [Pseudomonas aerug | 0.565 | 0.244 | 0.390 | 2e-38 | |
| 15596084 | 651 | acetyl-CoA synthetase [Pseudomonas aerug | 0.565 | 0.244 | 0.390 | 2e-38 | |
| 313105770 | 671 | acetyl-coenzyme A synthetase [Pseudomona | 0.565 | 0.236 | 0.390 | 2e-38 | |
| 291410621 | 653 | PREDICTED: acyl-CoA synthetase short-cha | 0.562 | 0.241 | 0.453 | 2e-38 | |
| 152985928 | 651 | acetyl-CoA synthetase [Pseudomonas aerug | 0.565 | 0.244 | 0.390 | 2e-38 | |
| 421155617 | 508 | acetyl-CoA synthetase, partial [Pseudomo | 0.565 | 0.312 | 0.390 | 2e-38 | |
| 420141199 | 651 | acetyl-CoA synthetase, partial [Pseudomo | 0.565 | 0.244 | 0.386 | 3e-38 | |
| 390331692 | 682 | PREDICTED: acetyl-coenzyme A synthetase | 0.569 | 0.234 | 0.427 | 5e-38 | |
| 429334900 | 651 | acetyl-CoA synthetase [Pseudomonas putid | 0.558 | 0.241 | 0.393 | 1e-37 | |
| 70731864 | 651 | acetyl-CoA synthetase [Pseudomonas prote | 0.565 | 0.244 | 0.394 | 3e-37 |
| >gi|418583649|ref|ZP_13147718.1| acetyl-CoA synthetase [Pseudomonas aeruginosa MPAO1/P1] gi|375047257|gb|EHS39806.1| acetyl-CoA synthetase [Pseudomonas aeruginosa MPAO1/P1] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D+ +TY++L E+VCK AN L+ + V +GD V IY+PM+ E VV MLAC RIGA+
Sbjct: 99 GDDPADHQEITYRQLHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAI 158
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 159 HSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGGKRTPLKANVDDALTNPETSSVQKII 218
Query: 130 KLRKV-------------------VTGSTGKP---------------------KGVLHTT 149
++ V GST P KGVLHTT
Sbjct: 219 VCKRTGAEIKWNQHRDVWYDDLMKVAGSTCAPKEMGAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YA+ TH+ VFDY+PG++YWCTAD+GW+TGHTY+VYGPLANGAT+++
Sbjct: 279 GGYLVYASLTHERVFDYRPGEVYWCTADIGWVTGHTYIVYGPLANGATTILFE 331
|
Source: Pseudomonas aeruginosa MPAO1/P1 Species: Pseudomonas aeruginosa Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15596084|ref|NP_249578.1| acetyl-CoA synthetase [Pseudomonas aeruginosa PAO1] gi|107100345|ref|ZP_01364263.1| hypothetical protein PaerPA_01001370 [Pseudomonas aeruginosa PACS2] gi|116048811|ref|YP_792389.1| acetyl-CoA synthetase [Pseudomonas aeruginosa UCBPP-PA14] gi|218893144|ref|YP_002442013.1| acetyl-CoA synthetase [Pseudomonas aeruginosa LESB58] gi|254239240|ref|ZP_04932563.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa C3719] gi|254245174|ref|ZP_04938496.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa 2192] gi|296390759|ref|ZP_06880234.1| acetyl-CoA synthetase [Pseudomonas aeruginosa PAb1] gi|355647497|ref|ZP_09055061.1| acetate-CoA ligase [Pseudomonas sp. 2_1_26] gi|386060213|ref|YP_005976735.1| acetyl-CoA synthetase [Pseudomonas aeruginosa M18] gi|386064611|ref|YP_005979915.1| acetyl-CoA synthetase [Pseudomonas aeruginosa NCGM2.S1] gi|392985635|ref|YP_006484222.1| acetyl-CoA synthetase [Pseudomonas aeruginosa DK2] gi|416876885|ref|ZP_11919502.1| acetyl-CoA synthetase [Pseudomonas aeruginosa 152504] gi|418589014|ref|ZP_13152944.1| acetyl-CoA synthetase [Pseudomonas aeruginosa MPAO1/P2] gi|419753933|ref|ZP_14280331.1| acetyl-CoA synthetase [Pseudomonas aeruginosa PADK2_CF510] gi|421169745|ref|ZP_15627751.1| acetyl-CoA synthetase [Pseudomonas aeruginosa ATCC 700888] gi|421176116|ref|ZP_15633784.1| acetyl-CoA synthetase [Pseudomonas aeruginosa CI27] gi|421182115|ref|ZP_15639599.1| acetyl-CoA synthetase [Pseudomonas aeruginosa E2] gi|421515510|ref|ZP_15962196.1| acetyl-CoA synthetase [Pseudomonas aeruginosa PAO579] gi|451987467|ref|ZP_21935625.1| Acetyl-coenzyme A synthetase [Pseudomonas aeruginosa 18A] gi|37077852|sp|Q9I558.1|ACSA1_PSEAE RecName: Full=Acetyl-coenzyme A synthetase 1; Short=AcCoA synthetase 1; Short=Acs 1; AltName: Full=Acetate--CoA ligase 1; AltName: Full=Acyl-activating enzyme 1 gi|9946787|gb|AAG04276.1|AE004523_4 acetyl-coenzyme A synthetase [Pseudomonas aeruginosa PAO1] gi|115584032|gb|ABJ10047.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa UCBPP-PA14] gi|126171171|gb|EAZ56682.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa C3719] gi|126198552|gb|EAZ62615.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa 2192] gi|218773372|emb|CAW29184.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa LESB58] gi|334840218|gb|EGM18878.1| acetyl-CoA synthetase [Pseudomonas aeruginosa 152504] gi|347306519|gb|AEO76633.1| acetyl-CoA synthetase [Pseudomonas aeruginosa M18] gi|348033170|dbj|BAK88530.1| acetyl-CoA synthetase [Pseudomonas aeruginosa NCGM2.S1] gi|354827904|gb|EHF12041.1| acetate-CoA ligase [Pseudomonas sp. 2_1_26] gi|375052173|gb|EHS44632.1| acetyl-CoA synthetase [Pseudomonas aeruginosa MPAO1/P2] gi|384399872|gb|EIE46237.1| acetyl-CoA synthetase [Pseudomonas aeruginosa PADK2_CF510] gi|392321140|gb|AFM66520.1| acetyl-CoA synthetase [Pseudomonas aeruginosa DK2] gi|404349238|gb|EJZ75575.1| acetyl-CoA synthetase [Pseudomonas aeruginosa PAO579] gi|404525730|gb|EKA35982.1| acetyl-CoA synthetase [Pseudomonas aeruginosa ATCC 700888] gi|404531269|gb|EKA41229.1| acetyl-CoA synthetase [Pseudomonas aeruginosa CI27] gi|404542650|gb|EKA51963.1| acetyl-CoA synthetase [Pseudomonas aeruginosa E2] gi|451755085|emb|CCQ88148.1| Acetyl-coenzyme A synthetase [Pseudomonas aeruginosa 18A] gi|453047913|gb|EME95626.1| acetyl-CoA synthetase [Pseudomonas aeruginosa PA21_ST175] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D+ +TY++L E+VCK AN L+ + V +GD V IY+PM+ E VV MLAC RIGA+
Sbjct: 99 GDDPADHQEITYRQLHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAI 158
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 159 HSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGGKRTPLKANVDDALTNPETSSVQKII 218
Query: 130 KLRKV-------------------VTGSTGKP---------------------KGVLHTT 149
++ V GST P KGVLHTT
Sbjct: 219 VCKRTGAEIKWNQHRDVWYDDLMKVAGSTCAPKEMGAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YA+ TH+ VFDY+PG++YWCTAD+GW+TGHTY+VYGPLANGAT+++
Sbjct: 279 GGYLVYASLTHERVFDYRPGEVYWCTADIGWVTGHTYIVYGPLANGATTILFE 331
|
Source: Pseudomonas aeruginosa PAO1 Species: Pseudomonas aeruginosa Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|313105770|ref|ZP_07792033.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa 39016] gi|424939969|ref|ZP_18355732.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa NCMG1179] gi|310878535|gb|EFQ37129.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa 39016] gi|346056415|dbj|GAA16298.1| acetyl-coenzyme A synthetase [Pseudomonas aeruginosa NCMG1179] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D+ +TY++L E+VCK AN L+ + V +GD V IY+PM+ E VV MLAC RIGA+
Sbjct: 119 GDDPADHQEITYRQLHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAI 178
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 179 HSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGGKRTPLKANVDDALTNPETSSVQKII 238
Query: 130 KLRKV-------------------VTGSTGKP---------------------KGVLHTT 149
++ V GST P KGVLHTT
Sbjct: 239 VCKRTGAEIKWNQHRDVWYDDLMKVAGSTCAPKEMGAEDPLFILYTSGSTGKPKGVLHTT 298
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YA+ TH+ VFDY+PG++YWCTAD+GW+TGHTY+VYGPLANGAT+++
Sbjct: 299 GGYLVYASLTHERVFDYRPGEVYWCTADIGWVTGHTYIVYGPLANGATTILFE 351
|
Source: Pseudomonas aeruginosa 39016 Species: Pseudomonas aeruginosa Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|291410621|ref|XP_002721594.1| PREDICTED: acyl-CoA synthetase short-chain family member 1-like [Oryctolagus cuniculus] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 113/192 (58%), Gaps = 34/192 (17%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
++P R+TY++LLE C+ AN LK GV++GDRVAIY+P+ V MLACARIGAVH
Sbjct: 134 DEPGTEVRITYRELLETTCRLANTLKRYGVRRGDRVAIYMPVSPTAVAAMLACARIGAVH 193
Query: 105 SIVVS---------------------------KCSGDDMSTVPAN-------SERERKLK 130
++V + C G D+ + + S +
Sbjct: 194 TVVFAGFSAESLAGRINDGMFVDRLSALEHMYPCCGFDIREMASEAPVCAPESMGSEDML 253
Query: 131 LRKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYG 190
+GSTG PKG++HT GYLLYAA THK VFDY+PGD++ C AD+GWITGH+YVVYG
Sbjct: 254 FMLYTSGSTGMPKGLVHTQAGYLLYAALTHKLVFDYQPGDVFGCVADIGWITGHSYVVYG 313
Query: 191 PLANGATSVIVS 202
PL NGATSV+
Sbjct: 314 PLCNGATSVLFE 325
|
Source: Oryctolagus cuniculus Species: Oryctolagus cuniculus Genus: Oryctolagus Family: Leporidae Order: Lagomorpha Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|152985928|ref|YP_001349971.1| acetyl-CoA synthetase [Pseudomonas aeruginosa PA7] gi|452878770|ref|ZP_21955948.1| acetyl-CoA synthetase [Pseudomonas aeruginosa VRFPA01] gi|150961086|gb|ABR83111.1| acetate--CoA ligase [Pseudomonas aeruginosa PA7] gi|452184597|gb|EME11615.1| acetyl-CoA synthetase [Pseudomonas aeruginosa VRFPA01] | Back alignment and taxonomy information |
|---|
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D+ +TY++L E+VCK AN L+ + V +GD V IY+PM+ E VV MLAC RIGA+
Sbjct: 99 GDDPADHQEITYRQLHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAI 158
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 159 HSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGGKRTPLKANVDDALTNPETSSVQKII 218
Query: 130 KLRKV-------------------VTGSTGKP---------------------KGVLHTT 149
++ V GST P KGVLHTT
Sbjct: 219 VCKRTGAEIKWNQHRDVWYDDLMKVAGSTCAPKEMGAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YA+ TH+ VFDY+PG++YWCTAD+GW+TGHTY+VYGPLANGAT+++
Sbjct: 279 GGYLVYASLTHERVFDYRPGEVYWCTADIGWVTGHTYIVYGPLANGATTILFE 331
|
Source: Pseudomonas aeruginosa PA7 Species: Pseudomonas aeruginosa Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|421155617|ref|ZP_15615090.1| acetyl-CoA synthetase, partial [Pseudomonas aeruginosa ATCC 14886] gi|404520197|gb|EKA30886.1| acetyl-CoA synthetase, partial [Pseudomonas aeruginosa ATCC 14886] | Back alignment and taxonomy information |
|---|
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 122/233 (52%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D+ +TY++L E+VCK AN L+ + V +GD V IY+PM+ E VV MLAC RIGA+
Sbjct: 99 GDDPADHQEITYRQLHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAI 158
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 159 HSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGGKRTPLKANVDDALTNPETSSVQKII 218
Query: 130 KLRKV-------------------VTGSTGKP---------------------KGVLHTT 149
++ V GST P KGVLHTT
Sbjct: 219 VCKRTGAEIKWNQHRDVWYDDLMKVAGSTCAPKEMGAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YA+ TH+ VFDY+PG++YWCTAD+GW+TGHTY+VYGPLANGAT+++
Sbjct: 279 GGYLVYASLTHERVFDYRPGEVYWCTADIGWVTGHTYIVYGPLANGATTILFE 331
|
Source: Pseudomonas aeruginosa ATCC 14886 Species: Pseudomonas aeruginosa Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|420141199|ref|ZP_14648901.1| acetyl-CoA synthetase, partial [Pseudomonas aeruginosa CIG1] gi|421162506|ref|ZP_15621345.1| acetyl-CoA synthetase [Pseudomonas aeruginosa ATCC 25324] gi|403246045|gb|EJY59799.1| acetyl-CoA synthetase, partial [Pseudomonas aeruginosa CIG1] gi|404534354|gb|EKA44095.1| acetyl-CoA synthetase [Pseudomonas aeruginosa ATCC 25324] | Back alignment and taxonomy information |
|---|
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/233 (38%), Positives = 122/233 (52%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D+ +TY++L E+VC+ AN L+ + V +GD V IY+PM+ E VV MLAC RIGA+
Sbjct: 99 GDDPADHQEITYRQLHEQVCRFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAI 158
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 159 HSVVFGGFSPEALAGRIIDCKSKVVITADEGVRGGKRTPLKANVDDALTNPETSSVQKII 218
Query: 130 KLRKV-------------------VTGSTGKP---------------------KGVLHTT 149
++ V GST P KGVLHTT
Sbjct: 219 VCKRTGAEIKWNQHRDVWYDDLMKVAGSTCAPKEMGAEDPLFILYTSGSTGKPKGVLHTT 278
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YA+ TH+ VFDY+PG++YWCTAD+GW+TGHTY+VYGPLANGAT+++
Sbjct: 279 GGYLVYASLTHERVFDYRPGEVYWCTADIGWVTGHTYIVYGPLANGATTILFE 331
|
Source: Pseudomonas aeruginosa CIG1 Species: Pseudomonas aeruginosa Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|390331692|ref|XP_790649.3| PREDICTED: acetyl-coenzyme A synthetase 2-like, mitochondrial-like [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
|---|
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/201 (42%), Positives = 121/201 (60%), Gaps = 41/201 (20%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
++P+ R+TYK+L E + AN L+ +GV++GDRVAIY+P+ V MLACARIGA+H
Sbjct: 162 DEPNQEERITYKQLYEMTNQLANSLRRQGVKRGDRVAIYMPVSPHTVAAMLACARIGAIH 221
Query: 105 SIVVSKCSGDDMSTVPANSER---------ERKLKLRKVV-------------------- 135
S+V + S + +++ + + + L +K V
Sbjct: 222 SVVFAGFSAEALASRIIDGKNLSTNRTTISDTLLDTKKSVYQNGVIAMAQESTECEPEVL 281
Query: 136 -----------TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGH 184
+GSTG PKG+ H+ GYLLYA+ THK+VFDY+PGD+Y C ADVGWITGH
Sbjct: 282 DSEDLLFMLYTSGSTGSPKGLAHSQAGYLLYASLTHKFVFDYQPGDVYACVADVGWITGH 341
Query: 185 TYVVYGPLANGATSVIV-SLP 204
+YVVYGPL+NGAT+V+ S+P
Sbjct: 342 SYVVYGPLSNGATTVLFESIP 362
|
Source: Strongylocentrotus purpuratus Species: Strongylocentrotus purpuratus Genus: Strongylocentrotus Family: Strongylocentrotidae Order: Echinoida Class: Echinoidea Phylum: Echinodermata Superkingdom: Eukaryota |
| >gi|429334900|ref|ZP_19215547.1| acetyl-CoA synthetase [Pseudomonas putida CSV86] gi|428760307|gb|EKX82574.1| acetyl-CoA synthetase [Pseudomonas putida CSV86] | Back alignment and taxonomy information |
|---|
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 122/231 (52%), Gaps = 74/231 (32%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP ++ +TY++L E+VCK AN L+ + V +GD V IY+PM+ E VV MLACARIGA+
Sbjct: 99 GDDPSEHRNITYRELHEQVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACARIGAI 158
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 159 HSVVFGGFSPEALAGRIIDCKSKVVITADEGLRGGRRTALKANVDDALTNPETSSIQKVI 218
Query: 130 KLRKV-------------------VTGSTGKPK---------------------GVLHTT 149
++ V GS PK GVLHTT
Sbjct: 219 VCKRTGADIKWNQHRDIWYEDLMKVAGSVCAPKEMGAEEALFILYTSGSTGKPKGVLHTT 278
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
GGYL+YA+ TH+ VFDY+PG+IYWCTADVGW+TGH+Y+VYGPLANGAT+++
Sbjct: 279 GGYLVYASMTHERVFDYRPGEIYWCTADVGWVTGHSYIVYGPLANGATTLL 329
|
Source: Pseudomonas putida CSV86 Species: Pseudomonas putida Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|70731864|ref|YP_261606.1| acetyl-CoA synthetase [Pseudomonas protegens Pf-5] gi|68346163|gb|AAY93769.1| acetate--CoA ligase [Pseudomonas protegens Pf-5] | Back alignment and taxonomy information |
|---|
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/233 (39%), Positives = 119/233 (51%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP + +TY++L EEVCK AN L+ + V +GD V IY+PM+ E VV MLAC RIGA+
Sbjct: 99 GDDPSESRNITYRELHEEVCKFANALRGQDVHRGDVVTIYMPMIPEAVVAMLACTRIGAI 158
Query: 104 HSIVVS----------------------------------KCSGDDMSTVPANSERERKL 129
HS+V K + DD T P S ++ +
Sbjct: 159 HSVVFGGFSPEALAGRIIDCRSKVVITADEGIRAGKKVPLKANVDDALTNPETSSIQKVI 218
Query: 130 KLRKV-------------------VTGSTGKPK---------------------GVLHTT 149
++ V GS PK GV HTT
Sbjct: 219 VCKRTGGNIKWNQHRDIWYEDLMKVAGSVCAPKEMGAEEALFILYTSGSTGKPKGVQHTT 278
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYLLYA+ TH+ VFDY+PG++YWCTADVGW+TGHTY+VYGPLANGAT+V+
Sbjct: 279 GGYLLYASLTHERVFDYRPGEVYWCTADVGWVTGHTYIVYGPLANGATTVLFE 331
|
Source: Pseudomonas protegens Pf-5 Species: Pseudomonas protegens Genus: Pseudomonas Family: Pseudomonadaceae Order: Pseudomonadales Class: Gammaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| FB|FBgn0012034 | 670 | AcCoAS "Acetyl Coenzyme A synt | 0.277 | 0.116 | 0.795 | 2.1e-56 | |
| UNIPROTKB|F1NST1 | 612 | ACSS2 "Uncharacterized protein | 0.313 | 0.143 | 0.640 | 1.4e-50 | |
| RGD|1305489 | 701 | Acss2 "acyl-CoA synthetase sho | 0.231 | 0.092 | 0.769 | 1.3e-48 | |
| ZFIN|ZDB-GENE-040718-388 | 698 | acss2 "acyl-CoA synthetase sho | 0.245 | 0.098 | 0.714 | 1.8e-48 | |
| MGI|MGI:1890410 | 701 | Acss2 "acyl-CoA synthetase sho | 0.231 | 0.092 | 0.769 | 2.1e-48 | |
| UNIPROTKB|E7EWU3 | 651 | ACSS2 "Acetyl-coenzyme A synth | 0.231 | 0.099 | 0.753 | 7.6e-47 | |
| UNIPROTKB|F1S4Y0 | 701 | ACSS2 "Uncharacterized protein | 0.231 | 0.092 | 0.753 | 8.6e-47 | |
| UNIPROTKB|A7YWF1 | 701 | ACSS2 "Uncharacterized protein | 0.231 | 0.092 | 0.769 | 1.1e-46 | |
| UNIPROTKB|J9P7N4 | 701 | ACSS2 "Uncharacterized protein | 0.231 | 0.092 | 0.753 | 1.1e-46 | |
| UNIPROTKB|Q9NR19 | 701 | ACSS2 "Acetyl-coenzyme A synth | 0.231 | 0.092 | 0.753 | 1.1e-46 |
| FB|FBgn0012034 AcCoAS "Acetyl Coenzyme A synthase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 2.1e-56, Sum P(2) = 2.1e-56
Identities = 66/83 (79%), Positives = 68/83 (81%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHTT GYLLYAATT K VFDYKPGDIYWCTADVGWITGHTYVVYGPLANG
Sbjct: 286 SGSTGKPKGVLHTTAGYLLYAATTFKIVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 345
Query: 196 ATSVIVS----LPG-EIYWCTAD 213
ATSVI PG + YW D
Sbjct: 346 ATSVIFEGTPFFPGNDRYWSVID 368
|
|
| UNIPROTKB|F1NST1 ACSS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 57/89 (64%), Positives = 69/89 (77%)
Query: 112 SGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDI 171
SG P + E +L + +GSTGKPKGVLHT GGY+LYAAT+ KYVFDY+P D+
Sbjct: 205 SGASTECEPEWCDSEDELFIL-YTSGSTGKPKGVLHTVGGYMLYAATSFKYVFDYQPEDV 263
Query: 172 YWCTADVGWITGHTYVVYGPLANGATSVI 200
YWCTAD+GWITGH+Y+ YGPLANGATSV+
Sbjct: 264 YWCTADIGWITGHSYITYGPLANGATSVL 292
|
|
| RGD|1305489 Acss2 "acyl-CoA synthetase short-chain family member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 304 (112.1 bits), Expect = 1.3e-48, Sum P(2) = 1.3e-48
Identities = 50/65 (76%), Positives = 59/65 (90%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGV+HT GGY+LY ATT KYVFD+ P D++WCTAD+GWITGH+YV YGPLANG
Sbjct: 317 SGSTGKPKGVVHTVGGYMLYVATTFKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANG 376
Query: 196 ATSVI 200
ATSV+
Sbjct: 377 ATSVL 381
|
|
| ZFIN|ZDB-GENE-040718-388 acss2 "acyl-CoA synthetase short-chain family member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 50/70 (71%), Positives = 58/70 (82%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHT GY+LY A+T K VFDY D+YWCTAD+GWITGH+Y+ YGPLANG
Sbjct: 314 SGSTGKPKGVLHTVSGYMLYTASTFKMVFDYHSDDVYWCTADIGWITGHSYITYGPLANG 373
Query: 196 ATSVIVS-LP 204
ATSV+ LP
Sbjct: 374 ATSVLFEGLP 383
|
|
| MGI|MGI:1890410 Acss2 "acyl-CoA synthetase short-chain family member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 2.1e-48, Sum P(2) = 2.1e-48
Identities = 50/65 (76%), Positives = 59/65 (90%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGV+HT GGY+LY ATT KYVFD+ P D++WCTAD+GWITGH+YV YGPLANG
Sbjct: 317 SGSTGKPKGVVHTIGGYMLYVATTFKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANG 376
Query: 196 ATSVI 200
ATSV+
Sbjct: 377 ATSVL 381
|
|
| UNIPROTKB|E7EWU3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 7.6e-47, Sum P(2) = 7.6e-47
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGV+HT GGY+LY ATT KYVFD+ D++WCTAD+GWITGH+YV YGPLANG
Sbjct: 267 SGSTGKPKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANG 326
Query: 196 ATSVI 200
ATSV+
Sbjct: 327 ATSVL 331
|
|
| UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGV+HT GGY+LY ATT KYVFD+ D++WCTAD+GWITGH+YV YGPLANG
Sbjct: 317 SGSTGKPKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANG 376
Query: 196 ATSVI 200
ATSV+
Sbjct: 377 ATSVL 381
|
|
| UNIPROTKB|A7YWF1 ACSS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGVLHT GGY+LY ATT KYVFD+ D++WCTAD+GWITGH+YV YGPLANG
Sbjct: 317 SGSTGKPKGVLHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANG 376
Query: 196 ATSVI 200
ATSV+
Sbjct: 377 ATSVL 381
|
|
| UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGV+HT GGY+LY ATT KYVFD+ D++WCTAD+GWITGH+YV YGPLANG
Sbjct: 317 SGSTGKPKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANG 376
Query: 196 ATSVI 200
ATSV+
Sbjct: 377 ATSVL 381
|
|
| UNIPROTKB|Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+GSTGKPKGV+HT GGY+LY ATT KYVFD+ D++WCTAD+GWITGH+YV YGPLANG
Sbjct: 317 SGSTGKPKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANG 376
Query: 196 ATSVI 200
ATSV+
Sbjct: 377 ATSVL 381
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 281 | |||
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 7e-48 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-46 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 1e-44 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 5e-44 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 8e-38 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 2e-35 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 8e-34 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 9e-32 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 6e-31 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 1e-29 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-28 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 3e-24 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 4e-23 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 5e-23 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 1e-22 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 2e-22 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 2e-22 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 1e-21 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 4e-21 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 4e-21 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 3e-20 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 6e-20 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 2e-19 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 2e-19 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 5e-18 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 2e-17 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-17 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 6e-15 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 3e-14 | |
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 4e-14 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 1e-13 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 2e-13 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 3e-13 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 7e-13 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 1e-12 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 5e-12 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 6e-12 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 6e-12 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 6e-12 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 8e-12 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-11 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-11 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 7e-11 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-10 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 2e-10 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 2e-10 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-10 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 3e-10 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-09 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 2e-09 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 3e-09 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 4e-09 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 6e-09 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 8e-09 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 9e-09 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 8e-08 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 1e-07 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 1e-07 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 1e-07 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 2e-07 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 2e-07 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 2e-07 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 2e-07 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 3e-07 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 4e-07 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 4e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 4e-07 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 4e-07 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 5e-07 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 6e-07 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 6e-07 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 2e-06 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 2e-06 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 3e-06 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 5e-06 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 6e-06 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 6e-06 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 6e-06 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 7e-06 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 1e-05 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 2e-05 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-05 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 2e-05 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 2e-05 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 3e-05 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 3e-05 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 4e-05 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 4e-05 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 5e-05 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 6e-05 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 7e-05 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 8e-05 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 9e-05 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 1e-04 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 1e-04 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 1e-04 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-04 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 4e-04 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 4e-04 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 5e-04 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-04 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 9e-04 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 0.001 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 0.001 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 0.002 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 0.002 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 0.002 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 0.002 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 0.003 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 0.004 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 0.004 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 0.004 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 7e-48
Identities = 53/64 (82%), Positives = 61/64 (95%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGVLHTTGGYL+YAA T KYVFDYK GD+YWCTADVGW+TGH+Y+VYGPLANGA
Sbjct: 255 GSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPLANGA 314
Query: 197 TSVI 200
T+++
Sbjct: 315 TTLM 318
|
Length = 637 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 2e-46
Identities = 61/218 (27%), Positives = 88/218 (40%), Gaps = 68/218 (31%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
+ + LTY L EV + AN LK G KGDRVAIY+P E V+ +LA ARIGA+
Sbjct: 33 GEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIP 92
Query: 105 SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKG-------------------- 144
++V + A ++R L + ++ G
Sbjct: 93 AVVSP------GLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVP 146
Query: 145 -----------------------------VLHTTG-------------GYLLYAATTHKY 162
+L+T+G GYL+ T K+
Sbjct: 147 RLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKF 206
Query: 163 VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
D PGD +W ++D GWI G Y V+ PLA+GAT+V+
Sbjct: 207 HGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVL 244
|
Length = 528 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 1e-44
Identities = 52/64 (81%), Positives = 60/64 (93%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGV+HTTGGYL+YAATT KYVFD P D+YWCTAD+GWITGH+Y+VYGPLANGA
Sbjct: 235 GSTGKPKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIVYGPLANGA 294
Query: 197 TSVI 200
T+V+
Sbjct: 295 TTVM 298
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 5e-44
Identities = 55/64 (85%), Positives = 60/64 (93%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGVLHTTGGYLLYAA T KYVFD K GDI+WCTADVGWITGH+Y+VYGPLANGA
Sbjct: 246 GSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGA 305
Query: 197 TSVI 200
T+V+
Sbjct: 306 TTVM 309
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 8e-38
Identities = 83/242 (34%), Positives = 121/242 (50%), Gaps = 54/242 (22%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
GN+P + LTY +LL+ VC+ AN LK GV+KGD V IYLPM++E+ + MLACARIGAV
Sbjct: 112 GNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAV 171
Query: 104 HSIVVSKCSGDDMS------------TVPANSERERKLKLRKVVTGSTGKPKGVLHTTGG 151
HS+V + S + ++ T A + + L+ +V + + + G
Sbjct: 172 HSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGI 231
Query: 152 YLLY--AATTHKYVFDYKPG-DIYW--------CTADVGWI--------------TG--- 183
L Y + ++ G D++W +V W+ TG
Sbjct: 232 CLTYENQLAMKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 291
Query: 184 ---HT---YVVYGPLANGATSVIVSL---PGEIYWCTADVGWITGHTYVVYGPLANGATS 234
HT Y+VY AT+ + P ++YWCTAD GWITGH+YV YGP+ NGAT
Sbjct: 292 GVLHTTGGYMVY-----TATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATV 346
Query: 235 VI 236
++
Sbjct: 347 LV 348
|
Length = 666 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-35
Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 15/163 (9%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
+Y++L E + ANVL S GV KG+RV LP E+ V L ++GAV+ + S
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 113 GDDMSTVPANSERE-----RKLKLR---------KVVTGSTGKPKGVLHTTGGYLLYAAT 158
+ + E + +L R +G+TGKPKGVLH + + AT
Sbjct: 61 PEPIRDRLELGEAKVLITTPELYERTDPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYAT 120
Query: 159 THKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201
+YV D +P D+YWCTAD GW+TG +Y + PL NG T V+
Sbjct: 121 A-RYVLDLRPDDVYWCTADPGWVTGTSYGIIAPLLNGVTLVVD 162
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 8e-34
Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 19/167 (11%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS- 109
TY +L EV + A+ L + G+ KGDRV IY+PM+ E VV +LA A+IGA+ + S
Sbjct: 6 RTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSG 65
Query: 110 -----------KCSGDDMSTVPANSERERKLKLRK------VVTGSTGKPKGVLHTTGGY 152
+ T R +++ L+ +G+TGKPKG +HT G+
Sbjct: 66 FGPDAVATRLQDAEAKVLITADGFLRRGKRVDLKDDPAMIIYTSGTTGKPKGTVHTHAGF 125
Query: 153 LLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSV 199
+ AA + FD KPGD D+GW+ G ++V G L GAT V
Sbjct: 126 PVKAAKDIGFCFDLKPGDRLLWITDMGWMMG-PWLVLGGLLLGATIV 171
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 9e-32
Identities = 39/64 (60%), Positives = 51/64 (79%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G D+ +TY++L EVC+ ANVLKS GV+KGDRVAIY+PM+ E+ + MLACARIGA+
Sbjct: 70 GEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAI 129
Query: 104 HSIV 107
HS+V
Sbjct: 130 HSVV 133
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 6e-31
Identities = 42/64 (65%), Positives = 52/64 (81%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+DP D ++TY++L EVC+ AN LKS GV+KGDRVAIY+PM+ E V MLACARIGAV
Sbjct: 90 GDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149
Query: 104 HSIV 107
HS+V
Sbjct: 150 HSVV 153
|
Length = 637 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 39/64 (60%), Positives = 53/64 (82%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G++P + ++TY++L EVC+ ANVLKS GV+KGDRVAIY+PM+ E + MLACARIGA+
Sbjct: 80 GDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAI 139
Query: 104 HSIV 107
HS+V
Sbjct: 140 HSVV 143
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-28
Identities = 54/159 (33%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSG 113
T+ +L EE + AN LK GV +GDRVA+ LP V E+ +L C ++GAV G
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVF------IPG 55
Query: 114 DDMSTVPANSERERKLKLRKVVT------------GSTGKPKGVLHTTGGYLLYAATTHK 161
R + R +VT G+TG PK VLHT Y L T
Sbjct: 56 TTQLGPKDIRYRLERAGARAIVTSADDPALLYFTSGTTGLPKMVLHTH-SYPLGHLVTGA 114
Query: 162 YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
Y D +P D++W AD GW G ++ P GA +
Sbjct: 115 YWLDLRPDDLHWTIADPGWAKGAWSSLFAPWLLGAAVFV 153
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-24
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 56/231 (24%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
LTY++L EV A+ L++ GV +GDRV IY+PM+ E V MLACARIGA+HS+V +
Sbjct: 84 LTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFA 143
Query: 113 GDDMST----------VPANSER------ERKLKLRKVVTGSTGKPKGVL---------- 146
++ V A++ K L + + P VL
Sbjct: 144 SHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMR 203
Query: 147 HTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGH--TYVVYGPLANG--------- 195
G + YAA ++ P V W+ + +Y++Y G
Sbjct: 204 LIPGRDVDYAALRTQHEDAQVP---------VEWLESNEPSYILYTSGTTGKPKGVQRDV 254
Query: 196 ---ATSVIVSLP-------GEIYWCTADVGWITGHTYVVYGPLANGATSVI 236
A ++ +S+ G++ + +DVGW+ GH+Y+VY PL GA +V+
Sbjct: 255 GGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVL 305
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 4e-23
Identities = 33/65 (50%), Positives = 50/65 (76%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TGKPKGV+ TGGY + + + ++ KPGD++W +DVGW+ GH+Y+VYGPL +G
Sbjct: 229 SGTTGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLLHG 288
Query: 196 ATSVI 200
AT+V+
Sbjct: 289 ATTVL 293
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 5e-23
Identities = 36/65 (55%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGVLH L + T KYV D D+YWCTAD GW+TG +Y ++ P NGA
Sbjct: 215 GSTGKPKGVLHVHNAMLQHYQTG-KYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGA 273
Query: 197 TSVIV 201
T+VI
Sbjct: 274 TNVID 278
|
Length = 570 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (242), Expect = 1e-22
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
W+WYY +GG +C IVDT+WQTETGG ++TPLPG TP+KPG+A
Sbjct: 384 WEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSAT 427
|
Length = 637 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 2e-22
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
W WYY IG +C IVDT+WQTETGGH++TPLPG TP+KPG+A
Sbjct: 364 WMWYYEVIGKERCPIVDTWWQTETGGHMITPLPGATPLKPGSAT 407
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-22
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TGKPKGV TGGY + AT+ +F K G+ ++C +D+GW+ GH+Y+VY PL G
Sbjct: 243 GTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGM 302
Query: 197 TSVIVS-LP----GEIYW 209
+++ LP I+W
Sbjct: 303 ATIMYEGLPTRPDAGIWW 320
|
Length = 629 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 33/56 (58%), Positives = 42/56 (75%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
TY +L +EV + A VL+ GV KGDRV IY+PM+ E V+ MLACARIGA+HS+V
Sbjct: 73 TYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVV 128
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 4e-21
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
W WYY +G +C IVDT+WQTETGG ++TPLPG TP KPG+A
Sbjct: 375 WMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSAT 418
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-21
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 26/166 (15%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS--- 109
L+Y +L E+ + AN+L GV+ GDRVA LP E+VV +LA R+GA++ + +
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 110 ------KCSGDDMSTVPANSERERKLK----LRKVVTGSTGKPKGV------LHTTGGYL 153
+ V N+ KL + +G+TG PKGV L Y+
Sbjct: 61 PKAIEYRLGHSGAKVVVTNAANRGKLDDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYM 120
Query: 154 LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSV 199
YA D + D++W AD GW G Y + GPLA G T+V
Sbjct: 121 RYAI-------DLRDDDVFWNIADPGWAYGLYYAITGPLAMGITTV 159
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-20
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
T+++L +EV + A +L+S GVQ+GDRV IY+PM+ E MLACARIGA+HS+V
Sbjct: 84 TYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVV 139
|
Length = 629 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 88.4 bits (220), Expect = 6e-20
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS-- 109
R TY +L E V + A L + GV+ GDRVA+ L E + A ++GAV V
Sbjct: 3 RYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAV---AVPIN 59
Query: 110 -KCSGDDMSTVPANSERERKLKLRKVVT---------GSTGKPKGVLHTTGGYLLYAATT 159
G++++ + +S R +V G+TG PKGVL T LL+AA
Sbjct: 60 TALRGEELAHILDHSG------ARLIVVDTAAILYTSGTTGPPKGVL-LTHAQLLFAARL 112
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201
+ +P D+ + I Y VY L GAT V++
Sbjct: 113 AARLLGLRPDDVLLTPLPLFHINAQAYSVYAALLVGATLVLL 154
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-19
Identities = 43/206 (20%), Positives = 66/206 (32%), Gaps = 59/206 (28%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRV---------------------AIYLPM------ 86
TY++L E + A L++ GV GDRV A Y+P+
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 87 --------------------VLEIVVTMLACARIGAVHSIVVSKCSGDDMSTVPANSERE 126
+L ++ +L + IV G D+ +
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGAS 120
Query: 127 RKLKLRKVV---------T-GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTA 176
+ V T G+TGKPKGV+ T L AA + +
Sbjct: 121 AEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLP 180
Query: 177 DVGWITGHTYVVYGPLANGATSVIVS 202
G + ++GPL G T V+V
Sbjct: 181 --LHFDGSVWEIFGPLLAGGTLVLVP 204
|
Length = 412 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-19
Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 47 PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSI 106
T+ +L + + AN L+ GV++GDRV +YLP E + LA ++GAV S+
Sbjct: 1 DGTREEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAV-SV 59
Query: 107 VVSKCSGDDMSTVPANSERERKLKLRKVVT-------------GSTGKPKGVLHTTGGYL 153
+S G D A R R R +VT G+TG PKG LH L
Sbjct: 60 PLSVLFGPD-----AVEHRLRDSGARVLVTDGSDDPAILIYTSGTTGPPKGALHGH-RVL 113
Query: 154 LYAATTHKYVFDY--KPGDIYWCTADVGWITG 183
L + F+ +PGD++W AD WI G
Sbjct: 114 LGHLPGVELYFELAPRPGDVFWTPADWAWIGG 145
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 5e-18
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 22/165 (13%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LTY++L + + ANVL++ GV GDRV + LP E+V LAC + GAV +
Sbjct: 10 SLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLL 69
Query: 112 SGDDMSTVPANSERERKLKLRKVVT------------GSTGKPKGVLHTTGGYLLYAATT 159
+ D+ + +S +VT G+TGKPKGV+H L +A
Sbjct: 70 TPQDLEHILDDSG------AALLVTEADDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAF 123
Query: 160 HKYVFDYKPGDIYWCTADV--GWITGHTYVVYGPLANGATSVIVS 202
+ + +PGD + ++ + + G++ + PL +GA++V++
Sbjct: 124 ARELLGLQPGDRIFSSSKLFFAYGLGNS--LLFPLFSGASAVLLP 166
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 2e-17
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TGKPKGV GGY + A + +F + G + + +DVGW+ GH+Y+VY PL G
Sbjct: 241 SGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAG 300
Query: 196 ATSVIVS-LP----GEIYW 209
A +V+ LP ++W
Sbjct: 301 AATVLYEGLPTNPDPGVWW 319
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 2e-17
Identities = 58/179 (32%), Positives = 77/179 (43%), Gaps = 44/179 (24%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
RLTY +L + + A L GV+ GD VA LP E VV LACARIGAV + +
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPI---- 56
Query: 112 SGDDMSTVPANSERE-----RKLKLRKVVT-----------------------GSTGKPK 143
VP ERE R+ + R + G+TG+PK
Sbjct: 57 -------VPIYRERELGFILRQARARVLFVPDEFRGFDYAAMPDDVALLLYTSGTTGEPK 109
Query: 144 GVLHT--TGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
GV+HT T LL ++ P D+ + + ITG Y + PL GAT V+
Sbjct: 110 GVMHTHNT---LLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLYGLELPLLLGATVVL 165
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 6e-15
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
+Y +L + + AN L+ GV++GDRV + LP V E+ MLA ++GAV + +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 113 GDDM---------STVPANSERERKLKLRKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV 163
D+ + A+ R L +G+TG PK VLHT Y + +T Y
Sbjct: 61 PADLRDRFSRGKPKAIVADETRADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLST-MYW 119
Query: 164 FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204
+PGDI+ + GW + P GAT ++ P
Sbjct: 120 IGLQPGDIHLNISSPGWAKHAWSSFFAPWNAGATVFGINYP 160
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 3e-14
Identities = 45/172 (26%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH------- 104
+TY +LLE V + A +L+ KGV+KGDRVA+Y+ + V+ A R GAV
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 105 --------------SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTG 150
+++ DD++ +P S G+TG PKG +HT
Sbjct: 61 REAELEHILNDSGARVLIVGSELDDVAVIPYTS-------------GTTGLPKGCMHTHR 107
Query: 151 GYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
+L A P + + + G + P+ GAT V+++
Sbjct: 108 T-VLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQGSMNAPIYTGATLVLLT 158
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 4e-14
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+W+++ +G +C I DT+WQTETGG ++TPLPG P KPG+A
Sbjct: 414 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 456
|
Length = 666 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 30/134 (22%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LT+++L + V + A L + GV++GDRVA+ +E ++ LA R+GAV
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAV-------- 52
Query: 112 SGDDMSTVPAN-----SERERKLKLRKVVT----------GSTGKPKGVLHTTGGYLLYA 156
+P N E +++L + GSTGKPK V+HT G L +
Sbjct: 53 ------VLPLNPRLPQEELQQQLADLQPDLDRPATIIFTSGSTGKPKAVVHTWGN-HLAS 105
Query: 157 ATTHKYVFDYKPGD 170
A P D
Sbjct: 106 ARGSAENLGLTPDD 119
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TGKPKGV+ + L A + GD+ + + G + G L G
Sbjct: 9 SGTTGKPKGVVLSHRNLLANAQALAQA-IGLTEGDVLLSVLPLFHVVGGGSGLLGALLAG 67
Query: 196 ATSVIVS 202
T V+
Sbjct: 68 GTVVLYE 74
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 3e-13
Identities = 49/177 (27%), Positives = 73/177 (41%), Gaps = 48/177 (27%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LTY++L E + A+ L+++GV GD VAI L E+VV +LA + GA +
Sbjct: 12 SLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKAGAAY------- 64
Query: 112 SGDDMSTVPANSE--RER--------KLKLRKVVT------------GSTGKPKGVLHTT 149
VP + ER KL ++T GSTG+PKGV+
Sbjct: 65 -------VPLDPAYPAERLAYMLEDSGAKL--LLTDPDDLAYVIYTSGSTGRPKGVMVEH 115
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTA----DVGWITGHTYVVYGPLANGATSVIVS 202
G L+ + + GD A D + ++ PL +GAT V+
Sbjct: 116 RG-LVNLLAWLQERYGLTAGDRVLQFASFSFDAS-----VWEIFPPLLSGATLVLAP 166
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-13
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
RLTY++L + A L++ GV+ GDRVAI LP E ++ LA R GAV
Sbjct: 38 RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAV 89
|
Length = 534 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
L++ +L +V A L++ GV GDRVA YLP + E VV MLA A +GA+ S C
Sbjct: 114 ELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSS----C 169
Query: 112 SGD 114
S D
Sbjct: 170 SPD 172
|
Length = 655 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-12
Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 64 KCANVL-KSKGVQKGDRVAIYLPMVLEIVVTMLACARIG--------------------- 101
K ANVL + G+Q+GDRVA+ LP V E + +AC R G
Sbjct: 53 KAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKDILYRLQA 112
Query: 102 --------------AVHSIVVSKCSGDDMSTVPANSERERKLKLRKVV------------ 135
AV SI S+C + + R+ L ++++
Sbjct: 113 SKAKCIVTSDELAPAVDSIA-SECPSLKTKLLVSEHSRDGWLNFKELLKEASTEHTCVKT 171
Query: 136 -----------TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGH 184
+G+TG PK H+ L +Y D P DI W +D GWI
Sbjct: 172 KSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAA 231
Query: 185 TYVVYGPLANGATSVIVSLP 204
+ ++ P GA + LP
Sbjct: 232 IWSLFSPWIQGACVFVHHLP 251
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 6e-12
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 40 PGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99
A D LTY +L + A L + G+ GDRVA+ P E VV LA R
Sbjct: 1 DRIALVDGGR--SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWR 58
Query: 100 IGAVHSIVVSKCSGDDMSTVPANSERERKLKLRKVV--TGSTGKPKGVLHT 148
G V + +++ + ++S+ + ++ +G+TG+PKGV+ T
Sbjct: 59 AGGVAVPLNPSYPAAELAYILSDSQPSLLVDPALIIYTSGTTGRPKGVVLT 109
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 6e-12
Identities = 50/210 (23%), Positives = 78/210 (37%), Gaps = 58/210 (27%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
D LTY +L EEV + N L+ G+++ +RV + L E +IGAV +
Sbjct: 26 YDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPI 85
Query: 108 VSKCSGDDM---------STVPANSERERKLK--------LRKVV--------------- 135
+ + DD + + E LK LR V+
Sbjct: 86 NTLLTPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQL 145
Query: 136 ------------------------TGSTGKPKGVLHTTGGYLLYAATTH-KYVFDYKPGD 170
+GSTG+PKGV+H +L A + K V D
Sbjct: 146 IATAAEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHD-MLVTAEAYAKNVLGITEDD 204
Query: 171 IYWCTADVGWITGHTYVVYGPLANGATSVI 200
+ + A + + G +Y PL+ GAT+V+
Sbjct: 205 VVFSAAKLFFAYGLGNGLYFPLSVGATTVL 234
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-12
Identities = 46/174 (26%), Positives = 68/174 (39%), Gaps = 21/174 (12%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
+ +T+ +L E V + A L + GV+ GDRVAI E V+ LA GAV +
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 108 VSKCSGDDMSTVPANSERERKLKLRKVVT--------------GSTGKPKGVLHTTGGYL 153
S ++++ + +S R V G+TG PKGV+ T L
Sbjct: 61 YPTSSPEEVAYILNDSG------ARVVFVEDKPDDLATLIYTSGTTGNPKGVMLTHRN-L 113
Query: 154 LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207
L A V PGD + + Y PL++GA P +
Sbjct: 114 LAQAAALLEVIPLSPGDRVLSFLPLAHVFEQRLGEYLPLSSGARVNFAESPETL 167
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-12
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+LTY +L E + A L+ GV+KGDRVA+ LP + + + GAV
Sbjct: 24 KLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAV 75
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 44/176 (25%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSK 110
LTY +L E + A L + G + GD VA+Y + +LAC + GA +
Sbjct: 15 DTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILACLKAGAAY------ 68
Query: 111 CSGDDMSTVPAN----SERERKL----KLRKVVT------------GSTGKPKGVLHTTG 150
VP + +ER K+ +V GSTGKPKGV +
Sbjct: 69 --------VPLDPSQPAERIAKILEAAGPAALVADPDDLAYILFTSGSTGKPKGVQISHA 120
Query: 151 GYLLYAATTHKYVFDYKPGDIYWCTA----DVGWITGHTYVVYGPLANGATSVIVS 202
+ + FD GD++ A D+ + ++ LA+GAT ++
Sbjct: 121 NLASFLDWMVE-DFDLTEGDVFSNQAPFSFDLS-----VFDLFPALASGATLYVIP 170
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 50/186 (26%), Positives = 70/186 (37%), Gaps = 42/186 (22%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS-- 105
D RLTY++L V + A L + G+ GDRV + LP V E V+ A ++GA+
Sbjct: 36 DGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLA 95
Query: 106 ---------------------IVVSKCSGDDMSTVPANSERERKLKLRKVVT-----GST 139
I+ + SG D A RE +L V G+T
Sbjct: 96 LPAHRAHEIGHFARQSEAKAYIIADRFSGFDY----AALARELLEELPDVALFQLSGGTT 151
Query: 140 GKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGP-----LAN 194
G PK + T Y LY+A PG +Y H + + P L
Sbjct: 152 GLPKLIPRTHNDY-LYSARASAEACGLDPGTVYLAVLPA----AHNFTLSSPGLLGALLA 206
Query: 195 GATSVI 200
G T V+
Sbjct: 207 GGTVVL 212
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 7e-11
Identities = 43/200 (21%), Positives = 70/200 (35%), Gaps = 61/200 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
LTY +L E + A L+++GV GD VA+ L E+VV +LA + GA
Sbjct: 12 SLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAGAAYVPLDPAY 71
Query: 104 ---------------------HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT------ 136
+++ + + + E V
Sbjct: 72 PAERLAFMLEDSGARVLLTDESLAPLARADQLPLVILEEELDAEDAGPPAPAVDADDLAY 131
Query: 137 -----GSTGKPKGVLHTTGGYLLYAATTHKYVF------DY---KPGDIYWCTADVGWIT 182
GSTG+PKGV A H+ V +Y P D + + + +
Sbjct: 132 VMYTSGSTGRPKGV-----------AVPHRGVVRLVRNTNYIALDPDDRFLQLSPLSF-D 179
Query: 183 GHTYVVYGPLANGATSVIVS 202
T+ ++G L NG V++
Sbjct: 180 ASTFEIWGALLNGGRLVLID 199
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R TY +L E V + AN L++ GV+KGDRVA++ E + A +IGAV
Sbjct: 31 RTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAV 82
|
Length = 521 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 23/52 (44%), Positives = 28/52 (53%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
LTY L E V A+ L+ G+ +G+RVAIYL LE V M A G V
Sbjct: 26 LTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVF 77
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
+++ +L +V + A L+ GV+ GDRVA YLP V E V+ MLA A IGA+ S C
Sbjct: 86 EISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSS----C 141
Query: 112 SGD 114
S D
Sbjct: 142 SPD 144
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R TY++ EEV A L + G++KGDRV I+ P V E V+T A A+IGA+
Sbjct: 43 RWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAI 94
|
Length = 559 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
+LTY +L E+VC+ + VL + + K D V IY+ LE ++ ML+CARIGA H ++
Sbjct: 92 KLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVL 147
|
Length = 647 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 34/118 (28%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
DD L+Y +L E + A L++ GV GDRV + L ++V +LA + GA +
Sbjct: 8 DDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAGAAY--- 64
Query: 108 VSKCSGDDMSTVPAN----SERERKL----KLRKVVT------------GSTGKPKGV 145
VP + +ER + + + ++T GSTGKPKGV
Sbjct: 65 -----------VPLDPSYPAERLQYMLEDAEPALLLTDPDDLAYVIYTSGSTGKPKGV 111
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-09
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
TY +L V + A L G++KGDRVA + LACAR GAVH
Sbjct: 36 SWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVH 88
|
Length = 523 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
D + TYK+L E K ANVLK GV+KGDRV I++P + E+ +L + GA+
Sbjct: 67 DASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI 124
|
Length = 570 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-09
Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA--------- 102
T+++L E K AN +++G + GD VA+++ LE V L A+IG
Sbjct: 3 HWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNL 62
Query: 103 -----VHSIVVSKCSG------DDMST-----VPANSERERKLKLRKVVT-GSTGKPKGV 145
+H I VSK D + T P+ + + KL + T G+TG PK
Sbjct: 63 RLESLLHCITVSKAKALIFNLLDPLLTQSSTEPPSQDDVNFRDKLFYIYTSGTTGLPKAA 122
Query: 146 LHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
+ Y AA + Y F +P D+ + + G V L +G+T VI
Sbjct: 123 VIVHSRYYRIAAGAY-YAFGMRPEDVVYDCLPLYHSAGGIMGVGQALLHGSTVVI 176
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 6e-09
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSK 110
LT+++L E + A L++ G++KGDRV + +P ++ A ++GAV ++
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 111 CSGDDMSTVPANSERERKLKLRKV--------VTGSTGKPKGVLHTTGGYLLYAATTH-- 160
+ +E + + + K +GSTG PKGV++T +AA
Sbjct: 61 MGRKHLGRCLEEAEPDAFIGIPKADDPAAILFTSGSTGPPKGVVYTHR---TFAAQIDAL 117
Query: 161 KYVFDYKPGDI 171
+ ++ + GD
Sbjct: 118 RSLYGIREGDR 128
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 14 SIVDTFWQTETGGHVLTPLPGC---TPMKPG--AAGNDPDDYSRLTYKKLLEEVCKCANV 68
SI W T + L C P K A R TY++L V + A
Sbjct: 15 SIAAGHWHDRT---INDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVG 71
Query: 69 LKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
L GV +GD V+ LP E V LAC+RIGAV
Sbjct: 72 LARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAV 106
|
Length = 547 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 9e-09
Identities = 49/176 (27%), Positives = 68/176 (38%), Gaps = 49/176 (27%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH------- 104
LTY +L K A+ L S GV+ GD VA+ L + V +LA + GA +
Sbjct: 17 SLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAILAVLKAGAAYVPIDPSA 76
Query: 105 --------------SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTG 150
++V++ S DD + V S GSTGKPKGV+ T
Sbjct: 77 PVERLQFIIEDSGATVVLT-SSPDDPAYVIYTS-------------GSTGKPKGVVITHR 122
Query: 151 GY--LLYAATTHKYVFDYKPGDIYWCTA----DVGWITGHTYVVYGPLANGATSVI 200
L A + +PGD A DV + ++ L G T VI
Sbjct: 123 NICNFLRA---EGAILGIRPGDRVLQFASIAFDVSILE-----IFTTLLAGGTLVI 170
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 8e-08
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R T+++L + V + A L + GVQ GDRV I+ P E ++T A ARIGA+
Sbjct: 45 RYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAI 96
|
Length = 558 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-07
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
+TY +L E + A +L+ +GV GDRVA++LP + + ++GAVH
Sbjct: 58 VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVH 110
|
Length = 567 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 36/131 (27%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
LTY +L + A L++ GV RV + L ++VV +LA + GA +
Sbjct: 24 SLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAY------- 76
Query: 112 SGDDMSTVPAN----SERERKL----KLRKVVT------------GSTGKPKGVL--HTT 149
VP + ER + R V+T GSTG+PKGV H
Sbjct: 77 -------VPLDPAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRN 129
Query: 150 GGYLLYAATTH 160
LL A
Sbjct: 130 AAALLQWAAAV 140
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 46/209 (22%), Positives = 71/209 (33%), Gaps = 52/209 (24%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105
D LTY +L V + A L ++G +KGD V + P LE V LA GAV +
Sbjct: 26 DAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVT 85
Query: 106 IVVSKCSGDDMS------------TVPANSERERKLKLRKVVT----------------- 136
+ +++ T +E+ L L VV
Sbjct: 86 TANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALEPVVLLDSADDGSAAIDDLLFA 145
Query: 137 ----------------------GSTGKPKGVLHTTGGYLLYAATTHKYV-FDYKPGDIYW 173
G+TG+ KGV+ T + A ++ D+
Sbjct: 146 DEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTL 205
Query: 174 CTADVGWITGHTYVVYGPLANGATSVIVS 202
C + I G T ++ L GAT V++
Sbjct: 206 CVLPMFHIYGLTVILLALLRLGATVVVMP 234
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
++W+Y ++G I+D + QTETG + P P+K G++G
Sbjct: 307 FEWFYSALG---VWILDIYGQTETGMGFIAGRP---PVKNGSSG 344
|
Length = 528 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 49/218 (22%), Positives = 70/218 (32%), Gaps = 72/218 (33%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
R +Y++L V + A L GV +GD V+ LP E LACARIGAV
Sbjct: 53 RFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIF 112
Query: 104 -------------------------------------------HSIVVSKCSGDDMSTVP 120
+V+ D V
Sbjct: 113 RERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVL 172
Query: 121 ANSERERKLKLRKVVTGS----------------TGKPKGVLHTTGGYLLYAATTHKYV- 163
ER+ ++ G TG+PKGV+HT + H Y
Sbjct: 173 MTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLF---SNIHPYAE 229
Query: 164 -FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
+ GD+ + + TG Y + PL AT+V+
Sbjct: 230 RLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVL 267
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 39/223 (17%), Positives = 65/223 (29%), Gaps = 64/223 (28%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV--------- 103
LT+ LL++ + A L+ G+++GD VA+ P +E L C G +
Sbjct: 11 LTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSYT 70
Query: 104 -----HSIVVSK-----CSGDDMSTV-------------------------------PAN 122
H + +SK C D++ V P
Sbjct: 71 PDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRL 130
Query: 123 SERERKLKLRKVVT-----------GSTGKPKGVLHTTGGYL--LYAATTHKYVFDYKPG 169
+ + G+TG PKGV+ + + L
Sbjct: 131 GAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNPDSSN 190
Query: 170 DIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTA 212
D+ G T + L GAT +I+ +
Sbjct: 191 DVVLTFLPFYHAYGLTTTLASLL-CGATVIIMPKFDSETFLKL 232
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 12/81 (14%)
Query: 42 AAGNDP--------DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT 93
AAG +P + + +T+ +L +V A L++ GV+ GDRV+ YLP + + VV
Sbjct: 96 AAGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVA 155
Query: 94 MLACARIGAVHSIVVSKCSGD 114
MLA A +GA+ S CS D
Sbjct: 156 MLATASVGAIW----SSCSPD 172
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-07
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
L+ +L V + A L ++GV++GDRVA++LP +E VV LACAR+GA
Sbjct: 36 LSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGA 85
|
Length = 540 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-07
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
RLTY +L V + A L + G+ KGDRVAI+ P V+ L + GAV
Sbjct: 26 FGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAV 81
|
Length = 513 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D +R+T +L +V + AN L + G +KGD +AI +PM + V+ LA G V
Sbjct: 200 GSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCV 259
Query: 104 HSIVVS 109
VVS
Sbjct: 260 ---VVS 262
|
Length = 728 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 44/172 (25%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
RL+Y + + A+ L++ GV+KGD VA+ + E ++ LA A++GAV
Sbjct: 3 RLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQ 62
Query: 104 ------HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT---------GSTGKPKGVLHT 148
H I VS R V+ G+TG PK +
Sbjct: 63 RGEVLAHCINVSDA--------------------RAVIVDPAFYIYTSGTTGLPKAAI-M 101
Query: 149 TGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
+ L A + KP D+ + + T LA GA+ +
Sbjct: 102 SHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGWSSALAAGASLAL 153
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 4e-07
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 54 TYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
TY++L E + A L++ GV GDRVA+ L E+VV +LA + GA +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAY 52
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
RLTY +L E + A+ L ++G+ GD V IY +E V ML + AV
Sbjct: 28 RLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVP 80
|
Length = 533 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 46 DPDDYS-RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
DP D TY +LL +V + AN+L S GV GD VA LP + E + G
Sbjct: 51 DPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG----GEAA 106
Query: 105 SIV 107
I
Sbjct: 107 GIA 109
|
Length = 632 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
TY +L ++V + A L++ GV+ GDRVAI LP + +V A R+GAV
Sbjct: 59 TYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAV 108
|
Length = 573 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 36 TPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95
TP P A D + +Y+++ E+V AN+L+ +GV+ GD VA+ LP + + + +
Sbjct: 471 TPDAPALA----DARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALH 526
Query: 96 ACARIGAV 103
A GA
Sbjct: 527 AIVEAGAA 534
|
Length = 1296 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 40 PGA-AGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98
P A A DP RLTY +L V A L ++GV+ RVA+ P ++ V+ +LA
Sbjct: 15 PDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALH 74
Query: 99 RIGAVHSIV 107
R+GAV +++
Sbjct: 75 RLGAVPALM 83
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
++Y +L + A+ ++GV KGD VA+ + E + L A++GAV
Sbjct: 62 SISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQ 121
Query: 104 ------HSIVVSK 110
HS+ +
Sbjct: 122 RGAVLAHSLNLVD 134
|
Length = 600 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R +Y +L EE+ + AN+ S G++KGD+VA++L E + A+IGA+
Sbjct: 34 VVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAI 88
|
Length = 517 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 54 TYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
TY + + V + A+ L + VQ GD VAI E V LA IGAV + + S
Sbjct: 7 TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLS 66
Query: 113 GD------DMSTVPANSERERKLKLRKVVTGSTGKPKGVLHTTG 150
GD +S +G+TG PKG +
Sbjct: 67 GDPLIHCLKISGAKFVIVDPDDPAALIYTSGTTGLPKGCAISWR 110
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 6e-06
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
D R TY L + AN+L + GV+ GDRVA+ + E + LA R GAV
Sbjct: 24 PDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAV 79
|
Length = 504 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGD 78
+WQ T +LT P + D RL+Y +L + + A L+ G++ GD
Sbjct: 24 YWQDRTLTDILTDHAARYPDRIAVI----DGERRLSYAELDQRADRLAAGLRRLGIKPGD 79
Query: 79 RVAIYLPMVLEIVVTMLACARIGA 102
V + LP V E +T A R+G
Sbjct: 80 TVLVQLPNVAEFYITFFALLRLGV 103
|
Length = 542 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 7e-06
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 53 LTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+TYK+L E V K A L + V+KG+R+AI LE +V + A A++ +
Sbjct: 28 MTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECI 79
|
Length = 496 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 45/192 (23%), Positives = 73/192 (38%), Gaps = 40/192 (20%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112
+T+ ++ + + VL+++G+ GDRV + LP ++V +LAC G + + +
Sbjct: 31 VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELH 90
Query: 113 GDDM------------------------STV--PAN--SERER------------KLKLR 132
DD S V A SE R L
Sbjct: 91 RDDHALAARNTEPALVVTSDALRDRFQPSRVAEAAELMSEAARVAPGGYEPMGGDALAYA 150
Query: 133 KVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPL 192
+G+TG PK +H L + + P D C+A + + G V+ PL
Sbjct: 151 TYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPL 210
Query: 193 ANGATSVIVSLP 204
A G ++VI S P
Sbjct: 211 ATGGSAVINSAP 222
|
Length = 705 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 23/131 (17%), Positives = 52/131 (39%), Gaps = 31/131 (23%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV----- 103
Y ++YK++ E + L++ G++ GD++ I+ E ++T AC V
Sbjct: 2 PYEWISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLY 61
Query: 104 ---------HSIVVSKCSG-----------DDMSTVPANSERERKLKLRKVV------TG 137
+ + ++ S +++ + ++ + + +G
Sbjct: 62 DTLGEEAIEYILNETEISIVFCDAVKVYSFEELEELGKKNKVPPTPPKPEDLATIMYTSG 121
Query: 138 STGKPKGVLHT 148
+TG PKGV+ T
Sbjct: 122 TTGNPKGVMLT 132
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 38/186 (20%), Positives = 75/186 (40%), Gaps = 39/186 (20%)
Query: 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSG 113
T++ L E A LK++G++ G RVA+ +E+V+ + AC +GA +++ ++ +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 114 DDMSTV--------------------------------PANSERERKLKLRKVVT----- 136
++ + + + ++ T
Sbjct: 61 NERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTS 120
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TGKPK V HT + +A K + D + + + I+G + +++ L GA
Sbjct: 121 GTTGKPKAVPHTFRNH-YASAVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGA 178
Query: 197 TSVIVS 202
T IV
Sbjct: 179 TLRIVD 184
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
R TY +L V + A VL+ +G G+R+A+ + +V ACAR+GA++ + +
Sbjct: 22 RWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL 81
Query: 112 SGDDMSTVPANSE 124
S ++ + ++E
Sbjct: 82 SASELDALLQDAE 94
|
Length = 488 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 52 RLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSK 110
TY+ LL+ + A+VL GV G+RV + +V LA + GA+ +
Sbjct: 60 TWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIVVTTMPL 119
Query: 111 CSGDDMSTVPANSERERKL-----------KLRKVVTGSTGKPKGVLHTTGGYLLYAATT 159
+++T+ + L L +G+TG PKG +H L
Sbjct: 120 LRAKELTTIVDKARITHALCDKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAF 179
Query: 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205
++V P D++ + + + G +V PL GA++V++
Sbjct: 180 PRHVLQPTPDDVFIGSPPLAFTFGLGGLVLFPLRFGASAVLLEQAT 225
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 31/151 (20%), Positives = 45/151 (29%), Gaps = 52/151 (34%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-- 103
D D+ LTY +L A L++ G GDRV + P L+ V C GA+
Sbjct: 17 DDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAV 75
Query: 104 ---------------HSIVVSK------CSGDDMSTVPANSERERKLKLRKVVT------ 136
+I+ + ++ + A L L +
Sbjct: 76 PAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAAL 135
Query: 137 ----------------------GSTGKPKGV 145
GSTG PKGV
Sbjct: 136 AAADWRPPPPDPDDIAFLQYTSGSTGAPKGV 166
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+TY +L E A L+S+G+ KG RVAI +P VL+ V + A R G V
Sbjct: 49 ITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYV 99
|
Length = 557 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 39/138 (28%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC---------- 97
D LTY +L A L++ GV GD VA+ +P E +V +L
Sbjct: 8 DGAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPI 67
Query: 98 ------ARIGAVHS-----IVVSKCSGDDMS-------TVPANSERERKLKLRKVVT--- 136
R A+ + V++ + E V
Sbjct: 68 DPDQPAERRAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAAAAESPAPPPPRVDPDD 127
Query: 137 --------GSTGKPKGVL 146
GSTG+PKGV+
Sbjct: 128 LAYVIFTSGSTGEPKGVM 145
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 45/211 (21%), Positives = 80/211 (37%), Gaps = 56/211 (26%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRV----------------AIY---LPMVL 88
DD S L+Y +L +V + L+ GV++ +RV AI +P+ L
Sbjct: 26 DDISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVPVAL 85
Query: 89 EIVVT------MLACARIGAV---------------------HSIVVSKCSGDDMS---T 118
++T ML +R V H +VV + ++
Sbjct: 86 NTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAEL 145
Query: 119 VPANSERERKLKLRK-------VVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDI 171
+ SE+ + + +GSTG PKGV+HT A + + D+
Sbjct: 146 LATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDV 205
Query: 172 YWCTADVGWITGHTYVVYGPLANGATSVIVS 202
+ A + + G + P++ GAT+V++
Sbjct: 206 VFSAAKLFFAYGLGNALTFPMSVGATTVLMG 236
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ TY L + AN L +KG++ GDRVA LP E + LAC ++GAV
Sbjct: 48 ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAV 100
|
Length = 547 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+D + T+ L + K AN K+ G+ KGD V + L E +MLA +IGA+
Sbjct: 40 DDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAI 98
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 39/137 (28%)
Query: 53 LTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV--------- 103
+T+ +L E V A L + GV+KGDRVA+ + +E+++ + A ++GAV
Sbjct: 28 VTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLS 87
Query: 104 ---------HSIVV---------SKCSGD---DMSTVPANSERERKLK----LRKVVT-- 136
+ V +K + + + E +++ L +V T
Sbjct: 88 REELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEEAEIQEEFDLDEVATIM 147
Query: 137 ---GSTGKPKGVLHTTG 150
G+TGKPKGV+ T G
Sbjct: 148 YTSGTTGKPKGVIQTYG 164
|
Length = 483 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG PK ++H GG LL H D +PGD + GW+ + V L +GA
Sbjct: 246 GTTGLPKCIVHGAGGTLLQHLKEHGLHCDLRPGDRLFYYTTTGWMMWNWLV--SGLLSGA 303
Query: 197 TSVI 200
T V+
Sbjct: 304 TLVL 307
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 9e-05
Identities = 41/189 (21%), Positives = 61/189 (32%), Gaps = 41/189 (21%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
+LTY +L + A +L S GV G+ VAI LE+VV +LA + GA
Sbjct: 252 QLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLY 311
Query: 104 ------------HSIVVSKCSG-------------DDMS-TVPANSERERKLKLRKVVT- 136
++ + DD +P + L +
Sbjct: 312 PAERLAYILEDSRPTLLLTQAHLRVDDVGLPGLALDDALSEIPDTDPIPQALLGDALAYI 371
Query: 137 ----GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPL 192
GSTG+PKGV F D A + + ++G L
Sbjct: 372 IYTSGSTGQPKGVRIEHRALANLLNDAGAR-FGLDADDRVLALASLSFDASVFE-IFGAL 429
Query: 193 ANGATSVIV 201
GA V+
Sbjct: 430 LEGARLVLA 438
|
Length = 642 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
D+ LTY +L E+ A L + GV+ GD VA+ V+ + A ++GA
Sbjct: 70 DERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGA 124
|
Length = 549 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 51 SRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
++Y++LLEE + A L+ + GV+KGDRV +Y+ + V+ A R AV
Sbjct: 34 RAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAV 87
|
Length = 546 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 45/203 (22%), Positives = 68/203 (33%), Gaps = 64/203 (31%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH------- 104
LTY +L + A+ L + GV V I + LE+VV +LA + G +
Sbjct: 1599 ELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEY 1658
Query: 105 ----------------------------------SIVVSK----CSGDDMSTVPANSERE 126
S+V+ + G S PA +
Sbjct: 1659 PRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQEDDWLEGYSDSN-PAVNLAP 1717
Query: 127 RKLKLRKVVTGSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHT 185
+ L +GSTG+PKG + G + AT Y ADV + +
Sbjct: 1718 QNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQL---------SAADV-VLQFTS 1767
Query: 186 YV-------VYGPLANGATSVIV 201
+ ++ PL NGA VI
Sbjct: 1768 FAFDVSVWELFWPLINGARLVIA 1790
|
Length = 3956 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
R TY + A+ L + GV++GDRVA+ +E + L CA +GA+
Sbjct: 46 RWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI 97
|
Length = 542 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 50 YSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ +TY++L E V A+ L S G+ GDRVAI+ E + LA +GAV
Sbjct: 43 WEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAV 96
|
Length = 613 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-04
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG+PKGV+ T L A D PGD+Y A + G +++ LA G
Sbjct: 11 GTTGRPKGVMLTHRNLLANAVNAL-AGVDLSPGDVYLLAAPLYHAAGGLFLLPA-LAAGG 68
Query: 197 TSVI 200
T V+
Sbjct: 69 TVVL 72
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
R TY++ + + A+ L G+ KGD VA+ P ++ GAV
Sbjct: 29 RYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVL 81
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 60/202 (29%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH------- 104
L+Y +L + + A+VL + GV V I + +E+VV +LA + G +
Sbjct: 537 VLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEY 596
Query: 105 --------------SIVVSKCSGDDMSTVPAN------SERERKLKLRKVV--------- 135
+++++ VPA E L
Sbjct: 597 PQDRLAYMLDDSGVRLLLTQSHLLAQLPVPAGLRSLCLDEPADLLCGYSGHNPEVALDPD 656
Query: 136 --------TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY- 186
+GSTG+PKGV + G Y + AD + T+
Sbjct: 657 NLAYVIYTSGSTGQPKGVAISHGALANYVCVIAER---------LQLAADDSMLMVSTFA 707
Query: 187 ------VVYGPLANGATSVIVS 202
++G LA+GAT ++
Sbjct: 708 FDLGVTELFGALASGATLHLLP 729
|
Length = 3956 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-04
Identities = 28/134 (20%), Positives = 44/134 (32%), Gaps = 44/134 (32%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC--ARIGA 102
++Y++L K L+ G++ GD V + + + AC I
Sbjct: 8 EGDKKEKFISYEQLFTRALKVLGALQKLGIKPGDEVVFQIEDNEDFIYVFWACILGGIIP 67
Query: 103 VHSIVVSKCSGDDMSTVPANSERERKLKLRKVV--------------------------- 135
V N++ E KLKL +V
Sbjct: 68 VP-------------LSYGNTD-EHKLKLLRVWNILNNPFLITDRDSLLSLPDDIAFIQF 113
Query: 136 -TGSTGKPKGVLHT 148
+GSTG+PKGV+ T
Sbjct: 114 SSGSTGEPKGVILT 127
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVA 81
R TY V + AN L+S GV+ GDRVA
Sbjct: 25 RYTYADFYRRVRRLANALESLGVKPGDRVA 54
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 64 KCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ A L G+++GD V + LP E V+ L +R GAV
Sbjct: 62 RVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAV 101
|
Length = 537 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGD-IYWCTADVGWITGHTYVVYGPLANG 195
G+TG PK ++H GG LL D PGD +W T GW+ + ++V G L G
Sbjct: 273 GTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTT-CGWMMWN-WLVSG-LLVG 329
Query: 196 ATSVI 200
AT V+
Sbjct: 330 ATLVL 334
|
Length = 655 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TG PK ++H+ GG L+ H D PGD + GW+ + ++V G LA G
Sbjct: 273 SGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN-WLVSG-LATG 330
Query: 196 ATSVIVSLPGEIYWCTADVGW 216
AT +V G + +V W
Sbjct: 331 AT--LVLYDGSPGFPATNVLW 349
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 42 AAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101
A P +TY +L + A+ L++ G+++GD VAI L E A R G
Sbjct: 2 AVIMAPSG-EVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSG 60
|
Length = 502 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGD 78
+WQ + +L P + + +Y++L + A L G+++GD
Sbjct: 19 YWQDKPLTDILRDQAARYPDAIAIICGN----RQWSYRELDQRADNLAAGLTKLGIKQGD 74
Query: 79 RVAIYLPMVLEIVVTMLACARIGAV 103
+ LP + E + A ++G
Sbjct: 75 TAVVQLPNIAEFYIVFFALLKLGVA 99
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYV-FDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
G+TG PKGV+ T L AA + P D+ + I G + PL G
Sbjct: 181 GTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGG 240
Query: 196 ATSVIVS 202
T V++S
Sbjct: 241 GTLVLLS 247
|
Length = 534 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGA 42
W W + +GGG+ I++ TE G +L +P P+KP +
Sbjct: 238 WLWLFERVGGGRAPIINYSGGTEISGGILGNVP-IRPIKPCS 278
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195
+G+TG K V+ + G +L+ + + + + + + +GW++ H + +YG L+ G
Sbjct: 263 SGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGF-LYGSLSLG 321
Query: 196 ATSVI 200
T V+
Sbjct: 322 NTFVM 326
|
Length = 647 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 66 ANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
A L ++GV+KGDR+ ++ ++ +M A R+GAV
Sbjct: 46 AAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV 83
|
Length = 528 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| KOG1177|consensus | 596 | 100.0 | ||
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 99.98 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 99.98 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 99.98 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 99.97 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 99.97 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 99.97 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 99.97 | |
| KOG1179|consensus | 649 | 99.97 | ||
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 99.97 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 99.97 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 99.97 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 99.97 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 99.97 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 99.97 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 99.97 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.97 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 99.97 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 99.97 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 99.97 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 99.97 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 99.97 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 99.97 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 99.97 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 99.97 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 99.97 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 99.97 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 99.97 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 99.97 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 99.97 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 99.97 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 99.96 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 99.96 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 99.96 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 99.96 | |
| KOG1176|consensus | 537 | 99.96 | ||
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 99.96 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.96 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 99.96 | |
| KOG1256|consensus | 691 | 99.96 | ||
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 99.96 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 99.96 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.96 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 99.96 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 99.96 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 99.96 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 99.96 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 99.96 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 99.96 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 99.96 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 99.96 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 99.96 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 99.96 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 99.96 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 99.96 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 99.96 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.96 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 99.96 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 99.96 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 99.96 | |
| PRK09274 | 552 | peptide synthase; Provisional | 99.96 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 99.96 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 99.96 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 99.96 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 99.95 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 99.95 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 99.95 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 99.95 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 99.95 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 99.95 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 99.95 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 99.95 | |
| PLN02479 | 567 | acetate-CoA ligase | 99.95 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 99.95 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.95 | |
| PRK05691 | 4334 | peptide synthase; Validated | 99.95 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 99.95 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 99.95 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 99.95 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 99.95 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 99.95 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 99.95 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 99.95 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 99.95 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.95 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 99.94 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 99.94 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 99.94 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 99.94 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 99.94 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 99.94 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.94 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.94 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 99.94 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 99.94 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.93 | |
| KOG1175|consensus | 626 | 99.93 | ||
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 99.93 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 99.93 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 99.92 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 99.91 | |
| KOG1180|consensus | 678 | 99.91 | ||
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 99.91 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 99.84 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 99.84 | |
| KOG3628|consensus | 1363 | 99.7 | ||
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 99.42 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 99.34 | |
| KOG1178|consensus | 1032 | 99.23 | ||
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 99.13 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 98.98 | |
| KOG3628|consensus | 1363 | 98.46 | ||
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 97.85 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 95.76 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 83.05 |
| >KOG1177|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=267.87 Aligned_cols=232 Identities=22% Similarity=0.205 Sum_probs=201.2
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
..++|+++.++-.++..||+.++++. ..+.+.||+|+.+.+.++|+.|..+|+++||+|++..||+.+|+.+++||++
T Consensus 47 l~~~Tigq~l~~~t~~v~dkea~Vf~--~eg~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~ 124 (596)
T KOG1177|consen 47 LDSETIGQLLETTTERVPDKEAAVFD--HEGIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACAR 124 (596)
T ss_pred cccccHHHHHHHHhhccCcceEEEEe--eccchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHH
Confidence 46679999999999999999998875 3456799999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC-------------------------------------------------------------
Q psy9113 100 IGAVHSIVVSKCSGDDMST------------------------------------------------------------- 118 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~------------------------------------------------------------- 118 (281)
+|.+.+++||.+..+++++
T Consensus 125 AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~ 204 (596)
T KOG1177|consen 125 AGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLP 204 (596)
T ss_pred hceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCC
Confidence 9999999999999998888
Q ss_pred -------------------cC-CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCc
Q psy9113 119 -------------------VP-ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTAD 177 (281)
Q Consensus 119 -------------------~~-~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~p 177 (281)
++ ......+++++ |.|||||||.|||+.+||.++++ +........++.+++++++..|
T Consensus 205 Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~N-na~~vg~r~g~~e~~~i~~~~P 283 (596)
T KOG1177|consen 205 GAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLN-NARAVGARAGYNEKHRICIPNP 283 (596)
T ss_pred CceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhh-hHHHHHHHhCcCcceEEEecCc
Confidence 00 01111226788 99999999999999999999999 8888888899999999999999
Q ss_pred hhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchh
Q psy9113 178 VGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISS 257 (281)
Q Consensus 178 l~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~s 257 (281)
++|.+|...+++++|..|++++++ .. .+++...++.|+++|+|+++ ..|.|+..+++.... ..+++++
T Consensus 284 l~H~~G~~~~~ma~l~~gat~Vfp--~~---~f~~k~alqai~~ekcT~l~---gtPtM~~Dlln~~~~----~~~~~s~ 351 (596)
T KOG1177|consen 284 LYHCFGCVLGVMAALMHGATIVFP--AP---SFDPKDALQAISNEKCTTLY---GTPTMFVDLLNIPQK----QQVDLSS 351 (596)
T ss_pred hHHHHHHHHHHHHHHHhCcEEEee--CC---CCChHHHHHHHHhhceEEEe---cChHHHHHHhcchhh----ccCchhh
Confidence 999999889999999999999997 42 79999999999999999976 555666677777766 4467777
Q ss_pred hhhccCCCc
Q psy9113 258 LMWAGSLDI 266 (281)
Q Consensus 258 l~~~g~~g~ 266 (281)
++-+--.|.
T Consensus 352 lr~~vigGa 360 (596)
T KOG1177|consen 352 LRKGVIGGA 360 (596)
T ss_pred hhhheeCCC
Confidence 765544444
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=266.07 Aligned_cols=228 Identities=35% Similarity=0.520 Sum_probs=191.2
Q ss_pred hccCCC-CCCCCCccccCCCC-CCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEE
Q psy9113 29 LTPLPG-CTPMKPGAAGNDPD-DYSRLTYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105 (281)
Q Consensus 29 l~~~a~-~~pd~~a~~~~~~~-~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v 105 (281)
++++.+ ..+|+.|+++.+.+ ..+.+||+||++.++++|+.|++ .|+ +||+|++++||.+|.++++|||+++|++++
T Consensus 15 ~dr~~~~~~~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA~~riGAI~~ 93 (528)
T COG0365 15 LDRHLEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLATARIGAIPA 93 (528)
T ss_pred hhhhhhccCCCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHHHHHcCCEEe
Confidence 444444 24789999886332 33899999999999999999987 567 999999999999999999999999999999
Q ss_pred EeecCCCCCCcCC--------------------------------cCC-----------------------Cchhhhccc
Q psy9113 106 IVVSKCSGDDMST--------------------------------VPA-----------------------NSERERKLK 130 (281)
Q Consensus 106 ~l~~~~~~~~~~~--------------------------------~~~-----------------------~~~~~~~~~ 130 (281)
|+.+.++++++.+ ... ....+.+|+
T Consensus 94 ~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~~~~~~~~~~~~dp 173 (528)
T COG0365 94 VVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDP 173 (528)
T ss_pred ecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccCCCCCccccCCCCe
Confidence 9999999988877 000 011234688
Q ss_pred c-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccc
Q psy9113 131 L-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYW 209 (281)
Q Consensus 131 ~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~ 209 (281)
+ ++|||||||+||||+|+|..+...........+.+.++|++++..++.|++|+.+.++.+|.+|+++++. ++.+..
T Consensus 174 l~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~--eg~p~~ 251 (528)
T COG0365 174 LFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATTVLY--DGRPFY 251 (528)
T ss_pred EEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeEEEe--CCCCCC
Confidence 8 9999999999999999999887756667777788889999999999999999999999999999999999 776655
Q ss_pred ccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 210 CTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 210 ~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
+++.+++.+++|++|.++ .+|..++.+++.-. ...++|+||+.++++|..
T Consensus 252 -~~~~~~~~ie~~~vt~~~---tsPT~~R~l~~~g~----~~~~dlssLr~~~SaGEP 301 (528)
T COG0365 252 -SPERLWEALEKYKVTIFG---TSPTFLRRLMKLGL----GEPYDLSSLRVLGSAGEP 301 (528)
T ss_pred -CHHHHHHHHHHhCCceEe---eCHHHHHHHHhcCC----cccccchhheeeeccCCC
Confidence 799999999999999987 66666655554443 267899999999998874
|
|
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=267.38 Aligned_cols=235 Identities=42% Similarity=0.678 Sum_probs=188.9
Q ss_pred hhhhccCCC-CCCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 26 GHVLTPLPG-CTPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 26 ~~~l~~~a~-~~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.++|+++++ .+|+++|+++.. .+..+.+||+||.+++.++|+.|++.|+++||+|+++++|+++++++++||+++|+
T Consensus 91 ~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~Ga 170 (666)
T PLN02654 91 YNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGA 170 (666)
T ss_pred HHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 567777765 489999998632 23457999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------c----------------------C------C--------C--------------
Q psy9113 103 VHSIVVSKCSGDDMST----------V----------------------P------A--------N-------------- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------~----------------------~------~--------~-------------- 122 (281)
+++|+++.++.+++.+ + . . .
T Consensus 171 v~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (666)
T PLN02654 171 VHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQE 250 (666)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccccccccccccccc
Confidence 9999999888776554 0 0 0 0
Q ss_pred -------------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhh
Q psy9113 123 -------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWIT 182 (281)
Q Consensus 123 -------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 182 (281)
...+.++++ |+|||||||.||||+++|++++..........++++++|++++..|++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 330 (666)
T PLN02654 251 GRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWIT 330 (666)
T ss_pred CCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhhh
Confidence 001236778 999999999999999999998653555566678899999999999999999
Q ss_pred hHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhcc
Q psy9113 183 GHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAG 262 (281)
Q Consensus 183 gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g 262 (281)
|+.+.++.+|+.|+++++. ++.+...++..+++.|+++++|++. .+|.++..+++.... . ...+++++++.++
T Consensus 331 g~~~~~~~~L~~G~tvvl~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~-~-~~~~~l~~Lr~i~ 403 (666)
T PLN02654 331 GHSYVTYGPMLNGATVLVF--EGAPNYPDSGRCWDIVDKYKVTIFY---TAPTLVRSLMRDGDE-Y-VTRHSRKSLRVLG 403 (666)
T ss_pred hhHHHHHHHHHcCceEEEE--CCCCCCCCHHHHHHHHHHhCCeEEE---eCHHHHHHHHhhCcc-c-cccCChhheeEEE
Confidence 9888889999999999999 6544457899999999999999976 566666666654321 1 1445677777666
Q ss_pred CCCcc
Q psy9113 263 SLDIR 267 (281)
Q Consensus 263 ~~g~~ 267 (281)
..|..
T Consensus 404 ~~Ge~ 408 (666)
T PLN02654 404 SVGEP 408 (666)
T ss_pred EecCC
Confidence 66653
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=260.76 Aligned_cols=222 Identities=23% Similarity=0.225 Sum_probs=187.4
Q ss_pred eccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 17 DTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 17 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
+..+...++.+.+.+.++.+|+++|+.+.+... ++||+||.++++++|+.|++.|+++||+|+++++|+++++++++|
T Consensus 5 ~~~~~~~~~~~~l~~~a~~~~~~~a~~~~~~~~--~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a 82 (534)
T COG0318 5 MRMTAELTLASLLERAARRNPDRPALIFLGRGG--RLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLA 82 (534)
T ss_pred ccccccccHHHHHHHHHHhCCCceEEEEcCCCc--eeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 345667799999999999999999999742222 699999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC-----------------------cC---------------------CCch--------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST-----------------------VP---------------------ANSE-------- 124 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~-----------------------~~---------------------~~~~-------- 124 (281)
|+++|++++|+++.+..+++.+ .. ....
T Consensus 83 ~~~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (534)
T COG0318 83 ALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGPD 162 (534)
T ss_pred HHhcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCcc
Confidence 9999999999999997777766 00 0000
Q ss_pred -----hhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhcc--CCCCCEEEEeCchhhhhhHhHHHHhhhccCc
Q psy9113 125 -----RERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFD--YKPGDIYWCTADVGWITGHTYVVYGPLANGA 196 (281)
Q Consensus 125 -----~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~ 196 (281)
...++++ ++|||||||.||||++||+++.. +.......++ +.++|++++++|++|.+|+...++.++..|+
T Consensus 163 ~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~-~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~ 241 (534)
T COG0318 163 ADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLA-NAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGG 241 (534)
T ss_pred cccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHH-HHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCC
Confidence 1246778 99999999999999999999998 7777777777 8999999999999999999888888899999
Q ss_pred eEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccc
Q psy9113 197 TSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNF 248 (281)
Q Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~ 248 (281)
++++. ++ ..++++.++..+.++++|++. ..|.++..+++......
T Consensus 242 ~~v~~--~~--~~f~~~~~~~~i~~~~~t~~~---~vPt~~~~ll~~~~~~~ 286 (534)
T COG0318 242 TLVLL--SP--EPFDPEEVLWLIEKYKVTVLS---GVPTFLRELLDNPEKDD 286 (534)
T ss_pred EEEeC--CC--CCcCHHHHHHHHHHhcceEEe---cchHHHHHHHhCCccCc
Confidence 99998 31 158999999999999999955 44445556777776643
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=260.19 Aligned_cols=235 Identities=31% Similarity=0.468 Sum_probs=183.8
Q ss_pred hhhhhccCCCCCCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 25 GGHVLTPLPGCTPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 25 l~~~l~~~a~~~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
..+++.++++.+|+++|+++.+ .+..+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 54 ~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Ga 133 (628)
T TIGR02316 54 CHNALDRHLDERGEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGA 133 (628)
T ss_pred HHHHHHHHhCcCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 3567888888899999998642 23457899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------c--C-----------------------------------C--------------
Q psy9113 103 VHSIVVSKCSGDDMST----------V--P-----------------------------------A-------------- 121 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------~--~-----------------------------------~-------------- 121 (281)
+++|+++.++.+++.+ + . .
T Consensus 134 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 213 (628)
T TIGR02316 134 IHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYA 213 (628)
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHH
Confidence 9999999887654443 0 0 0
Q ss_pred -------Cc-----hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHH
Q psy9113 122 -------NS-----ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVV 188 (281)
Q Consensus 122 -------~~-----~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~ 188 (281)
.. ....++++ |+|||||||.||||+++|+++...........++++++|++++..|++|+.|+...+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~ 293 (628)
T TIGR02316 214 ALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIV 293 (628)
T ss_pred HHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHH
Confidence 00 01235778 999999999999999999997653455566677889999999999999999987788
Q ss_pred HhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 189 YGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 189 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+.+|..|+++++. ++.+...++..+++.++++++|+++ .+|.++..+.+.... .. ...++++++.+...|.
T Consensus 294 ~~~L~~G~~~v~~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~-~~-~~~~l~~lr~~~~gGe 364 (628)
T TIGR02316 294 YAPLLAGAATVLY--EGLPTNPDPGVWWSIVERYGVRTMF---SAPTAIRVLKKQDAA-WL-RKHDLSSLHWLFLAGE 364 (628)
T ss_pred HHHHhccceEEEe--CCCCCCCCHHHHHHHHHHhCCeEEE---eCHHHHHHHHhcCCc-cc-ccCCccceeEEEEecC
Confidence 9999999999998 6544567899999999999999976 555555554443211 11 2345555555444443
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=257.35 Aligned_cols=236 Identities=45% Similarity=0.716 Sum_probs=185.9
Q ss_pred chhhhhccCCCCCCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
...+.|.++++++||++|+++.. .+..+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 58 ~~~~~l~~~~~~~p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 137 (625)
T TIGR02188 58 VSYNCVDRHLEARPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIG 137 (625)
T ss_pred HHHHHHHHhhccCCCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 44567778888899999998643 2345789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC-----------------------------------cC--CC----------------------
Q psy9113 102 AVHSIVVSKCSGDDMST-----------------------------------VP--AN---------------------- 122 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~-----------------------------------~~--~~---------------------- 122 (281)
++++|+++.++.+++.+ .+ ..
T Consensus 138 av~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (625)
T TIGR02188 138 AIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWW 217 (625)
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccH
Confidence 99999999887765443 00 00
Q ss_pred -------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHH
Q psy9113 123 -------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVV 188 (281)
Q Consensus 123 -------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~ 188 (281)
.....++++ |+|||||||+||||+++|+++...........+++.++|++++..|++|..|..+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~ 297 (625)
T TIGR02188 218 HDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIV 297 (625)
T ss_pred HHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHH
Confidence 001225678 999999999999999999998763444455567888999999999999999987788
Q ss_pred HhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 189 YGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 189 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+.+|..|+++++. ++.+...++..+++.++++++|++. ..|.++..+++...... ...++++++.+...|.
T Consensus 298 ~~~l~~G~t~vl~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~~~--~~~~l~~lr~i~~~G~ 368 (625)
T TIGR02188 298 YGPLANGATTVMF--EGTPTYPDPGRFWEIIEKHKVTIFY---TAPTAIRALMRLGDEWV--KKHDLSSLRLLGSVGE 368 (625)
T ss_pred HHHHHcCCeEEEE--CCCCCCCChhHHHHHHHHhCCeEEE---eCHHHHHHHHhcCCccc--ccCCccceeEEEEecC
Confidence 9999999999998 5444456899999999999999976 55556666555432211 3345666665555444
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-32 Score=255.65 Aligned_cols=234 Identities=45% Similarity=0.702 Sum_probs=183.5
Q ss_pred hhhhccCCCCCCCCCccccCCC--CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 26 GHVLTPLPGCTPMKPGAAGNDP--DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 26 ~~~l~~~a~~~pd~~a~~~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
.+.|.+.++++||++|+++.+. +..+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 70 ~~~l~~~~~~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav 149 (637)
T PRK00174 70 YNCLDRHLKTRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAV 149 (637)
T ss_pred HHHHHHhhccCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 4667788888999999986422 24578999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC----------c--CC--------------------------------------------------
Q psy9113 104 HSIVVSKCSGDDMST----------V--PA-------------------------------------------------- 121 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~----------~--~~-------------------------------------------------- 121 (281)
++|+++.++.+++.+ + +.
T Consensus 150 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (637)
T PRK00174 150 HSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHEL 229 (637)
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHH
Confidence 999999988765544 0 00
Q ss_pred ---------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhh
Q psy9113 122 ---------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGP 191 (281)
Q Consensus 122 ---------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~ 191 (281)
......++++ ++|||||||.||||+++|+++...........+++.++|++++..|++|..|+...++.+
T Consensus 230 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 309 (637)
T PRK00174 230 VAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGP 309 (637)
T ss_pred HhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHH
Confidence 0001225678 999999999999999999998763444445557888899999999999999987789999
Q ss_pred hccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 192 LANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 192 l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
|..|+++++. ++.+...+++.+++.++++++|++. .+|.++..+++...... ...++++++.+...|.
T Consensus 310 l~~G~~~v~~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~~~--~~~~~~~lr~i~~~Ge 377 (637)
T PRK00174 310 LANGATTLMF--EGVPNYPDPGRFWEVIDKHKVTIFY---TAPTAIRALMKEGDEHP--KKYDLSSLRLLGSVGE 377 (637)
T ss_pred HHcCCEEEEE--CCCCCCCChHHHHHHHHhcCCeEEe---ecHHHHHHHHhcCCccc--ccCCccceeEEEEeCC
Confidence 9999999998 5434456899999999999999977 55666666665432211 2234555554444433
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-32 Score=256.57 Aligned_cols=208 Identities=16% Similarity=0.151 Sum_probs=171.9
Q ss_pred cchhhhhccCCCCCCCCCccccCC---C--CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHH
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGND---P--DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~---~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~ 97 (281)
.|+.+++.+.++++||++|+.+.+ . +..+.+||+|+.++++++|+.|+++|+++||+|+++++|+++|+++++||
T Consensus 45 ~t~~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~lA~ 124 (666)
T PLN02614 45 DSCWDVFRMSVEKYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISMEAC 124 (666)
T ss_pred CcHHHHHHHHHHhCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 499999999999999999997421 1 22356899999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeecCCCCCCcCC-----------------------cCC-----------C---------------------
Q psy9113 98 ARIGAVHSIVVSKCSGDDMST-----------------------VPA-----------N--------------------- 122 (281)
Q Consensus 98 ~~~G~~~v~l~~~~~~~~~~~-----------------------~~~-----------~--------------------- 122 (281)
+++|+++||+++.++.+++.+ .+. .
T Consensus 125 ~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 204 (666)
T PLN02614 125 NAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLVIYAWD 204 (666)
T ss_pred HHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcEEEEHH
Confidence 999999999999998877766 000 0
Q ss_pred -------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhh-----ccCCCCCEEEEeCchhhhhh
Q psy9113 123 -------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV-----FDYKPGDIYWCTADVGWITG 183 (281)
Q Consensus 123 -------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~l~~~pl~h~~g 183 (281)
.....++++ |+|||||||.||||++||+++.. ........ .++.++|++++.+|++|+++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~-~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~ 283 (666)
T PLN02614 205 EFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVT-LIAGVIRLLKSANAALTVKDVYLSYLPLAHIFD 283 (666)
T ss_pred HHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHH-HHHHHHhhccccccCCCCCcEEEEeccHHHHHH
Confidence 001135778 99999999999999999999987 55443332 25678999999999999999
Q ss_pred HhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 184 HTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 184 l~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
.. .+..++..|+++++. ..+++.+++.++++++|+++ .+|.++..+++
T Consensus 284 ~~-~~~~~l~~G~~v~~~-------~~~~~~~~~~i~~~~~T~~~---~vP~~~~~l~~ 331 (666)
T PLN02614 284 RV-IEECFIQHGAAIGFW-------RGDVKLLIEDLGELKPTIFC---AVPRVLDRVYS 331 (666)
T ss_pred HH-HHHHHHHhCCEEEEe-------CCCHHHHHHHHHHhCCeEEE---ecHHHHHHHHH
Confidence 85 456778899999888 35889999999999999977 55666666654
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=255.92 Aligned_cols=236 Identities=17% Similarity=0.033 Sum_probs=180.0
Q ss_pred ccchhhhhccCCCCCCCCCccccCC-CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGND-PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~-~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
..|+.+.|.+.++++||++|+++.+ .+..+.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 38 PRRLTDRLVHWAQEAPDRVFLAERGADGGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred CccHHHHHHHHHHHCCCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 3489999999999999999998642 223579999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCC-----CCCcCC-----------c--------------C-------------C---------------C
Q psy9113 101 GAVHSIVVSKCS-----GDDMST-----------V--------------P-------------A---------------N 122 (281)
Q Consensus 101 G~~~v~l~~~~~-----~~~~~~-----------~--------------~-------------~---------------~ 122 (281)
|++++|+++.++ .+++.+ . . . .
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 197 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLATPPTA 197 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHhcccccc
Confidence 999999999876 222211 0 0 0 0
Q ss_pred ------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCC--CCCEEEEeCchhhhhhHhHHHHhhhc
Q psy9113 123 ------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYK--PGDIYWCTADVGWITGHTYVVYGPLA 193 (281)
Q Consensus 123 ------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~--~~~~~l~~~pl~h~~gl~~~~~~~l~ 193 (281)
.....++++ |+|||||||.||||++||+++.. ........++.. .++++++.+|++|.+|+...++.+++
T Consensus 198 ~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~l~ 276 (614)
T PRK08180 198 AVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCA-NQQMLAQTFPFLAEEPPVLVDWLPWNHTFGGNHNLGIVLY 276 (614)
T ss_pred chhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHH-HHHHHHhhccccCCCCcEEEEecchHHHhhHHHHHHHHHh
Confidence 001236778 99999999999999999999988 665555555543 56899999999999998778889999
Q ss_pred cCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccC
Q psy9113 194 NGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGS 263 (281)
Q Consensus 194 ~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~ 263 (281)
.|+++++. ++.....+...+++.++++++|.++ .+|.++..+++.+.........++++++.+..
T Consensus 277 ~G~~v~~~--~~~~~~~~~~~~l~~i~~~~~t~~~---~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~ 341 (614)
T PRK08180 277 NGGTLYID--DGKPTPGGFDETLRNLREISPTVYF---NVPKGWEMLVPALERDAALRRRFFSRLKLLFY 341 (614)
T ss_pred cCCEEEEe--CCCccchhHHHHHHHHHHhCCcEEe---chHHHHHHHHHHHHhchhhhhhhccceeEEEE
Confidence 99999998 4211122345678889999999977 55666677776554322112233445554433
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=253.50 Aligned_cols=209 Identities=15% Similarity=0.173 Sum_probs=172.4
Q ss_pred ccchhhhhccCCCCCCCCCccccC-----CCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGN-----DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~-----~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
..|+.+.+.+.++++|+++|+.+. ..+..+.+||+|+.++++++|+.|.++|+++||+|+++++|+++|+++++|
T Consensus 42 ~~t~~~~l~~~~~~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 121 (660)
T PLN02861 42 IDSPWQFFSDAVKKYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (660)
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 348999999999999999998631 123446899999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC--------------------------cC--CC--------------------------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST--------------------------VP--AN-------------------------- 122 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~--------------------------~~--~~-------------------------- 122 (281)
|+++|+++||+++.++.+++.+ .+ ..
T Consensus 122 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~ 201 (660)
T PLN02861 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSW 201 (660)
T ss_pred HHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEH
Confidence 9999999999999998877766 00 00
Q ss_pred -------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhcc-----CCCCCEEEEeCchhhhhh
Q psy9113 123 -------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFD-----YKPGDIYWCTADVGWITG 183 (281)
Q Consensus 123 -------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-----~~~~~~~l~~~pl~h~~g 183 (281)
.....++++ |+|||||||.||||++||+++.. ........++ +.++|++++.+|++|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~-~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~~ 280 (660)
T PLN02861 202 EEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIA-EVLSTDHLLKVTDRVATEEDSYFSYLPLAHVYD 280 (660)
T ss_pred HHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHH-HHHHHHhccccccccCCCCCEEEEECcHHHHHH
Confidence 001236778 99999999999999999999988 5554443332 467899999999999999
Q ss_pred HhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 184 HTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 184 l~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
+.. .+.+++.|+++++. .++++.+++.|+++++|+++ .+|.++..+++
T Consensus 281 ~~~-~~~~l~~G~~v~~~-------~~~~~~~~~~i~~~~~T~~~---~vP~~~~~l~~ 328 (660)
T PLN02861 281 QVI-ETYCISKGASIGFW-------QGDIRYLMEDVQALKPTIFC---GVPRVYDRIYT 328 (660)
T ss_pred HHH-HHHHHHhCCEEEEe-------CCCHHHHHHHHHHhCCcEEe---echHHHHHHHH
Confidence 864 45689999999988 45789999999999999977 55556666654
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=253.19 Aligned_cols=209 Identities=15% Similarity=0.067 Sum_probs=176.4
Q ss_pred cchhhhhccCCCCCCCCCcccc---CCC--CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHH
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAG---NDP--DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~---~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~ 97 (281)
.|+.+++++.++++||++|+.+ .++ +..+.+||+|+.++++++|+.|+++|+++||+|+++++|+++|+++++||
T Consensus 44 ~tl~~~l~~~a~~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 123 (651)
T PLN02736 44 GTLHDNFVYAVETFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC 123 (651)
T ss_pred CCHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 4899999999999999999843 111 23467999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeecCCCCCCcCC--------------------------cC----------C--------------------
Q psy9113 98 ARIGAVHSIVVSKCSGDDMST--------------------------VP----------A-------------------- 121 (281)
Q Consensus 98 ~~~G~~~v~l~~~~~~~~~~~--------------------------~~----------~-------------------- 121 (281)
+++|++++|+++.++.+++.+ .+ .
T Consensus 124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (651)
T PLN02736 124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSK 203 (651)
T ss_pred HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHH
Confidence 999999999999988877766 00 0
Q ss_pred -----------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHH
Q psy9113 122 -----------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVY 189 (281)
Q Consensus 122 -----------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~ 189 (281)
......++++ |+|||||||.||||++||+++.. .........++.++|++++.+|++|.+|+. .++
T Consensus 204 ~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~-~~~~~~~~~~~~~~d~~l~~lPl~h~~~~~-~~~ 281 (651)
T PLN02736 204 LLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIA-NVAGSSLSTKFYPSDVHISYLPLAHIYERV-NQI 281 (651)
T ss_pred HHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHH-HHHHHHhccCCCCCCEEEEeCCHHHHHHHH-HHH
Confidence 0001236778 99999999999999999999988 777666777888999999999999999985 678
Q ss_pred hhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 190 GPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 190 ~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
.++..|+++++. ..++..+++.++++++|+++ .+|.++..+++.
T Consensus 282 ~~l~~G~~i~~~-------~~~~~~~~~~i~~~~~t~~~---~vP~~~~~l~~~ 325 (651)
T PLN02736 282 VMLHYGVAVGFY-------QGDNLKLMDDLAALRPTIFC---SVPRLYNRIYDG 325 (651)
T ss_pred HHHHcCCEEEEe-------CCCHHHHHHHHHHhCCcEEe---cchHHHHHHHHH
Confidence 899999999988 34788999999999999977 555566665543
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=251.88 Aligned_cols=235 Identities=31% Similarity=0.487 Sum_probs=183.0
Q ss_pred hhhhhccCCCCCCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 25 GGHVLTPLPGCTPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 25 l~~~l~~~a~~~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
..+++++.++.+||++|+++.+ .+..+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 55 ~~~~l~~~~~~~p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 134 (629)
T PRK10524 55 CHNAVDRHLAKRPEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGA 134 (629)
T ss_pred HHHHHHHhhccCCCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCc
Confidence 3677888888899999998642 23457899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------c--C-----------------------------------C--------------
Q psy9113 103 VHSIVVSKCSGDDMST----------V--P-----------------------------------A-------------- 121 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------~--~-----------------------------------~-------------- 121 (281)
+++|+++.++.+++.+ + . .
T Consensus 135 v~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 214 (629)
T PRK10524 135 IHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYA 214 (629)
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHH
Confidence 9999998877654433 0 0 0
Q ss_pred ------C-c-----hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHH
Q psy9113 122 ------N-S-----ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVV 188 (281)
Q Consensus 122 ------~-~-----~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~ 188 (281)
. . ..+.++++ ++|||||||.||||+++|+++...........+++.++|++++..|++|..|+.+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 294 (629)
T PRK10524 215 TLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIV 294 (629)
T ss_pred HHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHH
Confidence 0 0 01235778 999999999999999999987653444555567888899999999999999887788
Q ss_pred HhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 189 YGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 189 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+.+|..|+++++. ++.+...++..+++.++++++|+++ .+|.++..+.+.... . ....++++++.+...|.
T Consensus 295 ~~~l~~G~~~v~~--~g~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~-~-~~~~~l~~lr~i~~~Ge 365 (629)
T PRK10524 295 YAPLLAGMATIMY--EGLPTRPDAGIWWRIVEKYKVNRMF---SAPTAIRVLKKQDPA-L-LRKHDLSSLRALFLAGE 365 (629)
T ss_pred HHHHhCCCEEEEE--CCCCCCCChHHHHHHHHHcCceEEE---eCHHHHHHHHhcCcc-c-ccccChhheeEEEEeCC
Confidence 9999999999998 6544566889999999999999977 555555554433211 1 13345556655544443
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=244.95 Aligned_cols=212 Identities=20% Similarity=0.167 Sum_probs=180.2
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
...++...+.+.++.+|+.+++.......++.+||+|+++++.++|++|+..|+++||+|++++.|+++|+++.+||+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~i~d~a~~~~ 93 (613)
T COG1022 14 EIHTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILAL 93 (613)
T ss_pred hcccHHHHHHHHhhcCCcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 34588899999999999988988777778899999999999999999999999977999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC-----------------------------------------------------------cC-
Q psy9113 101 GAVHSIVVSKCSGDDMST-----------------------------------------------------------VP- 120 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~-----------------------------------------------------------~~- 120 (281)
|++.||+.+.++++++.+ ..
T Consensus 94 g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (613)
T COG1022 94 GAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEGISL 173 (613)
T ss_pred CCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhccccccccccchh
Confidence 999999999999998888 00
Q ss_pred --C--------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhcc-CCCCCEEEEeCchhhhhhHhHHH
Q psy9113 121 --A--------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFD-YKPGDIYWCTADVGWITGHTYVV 188 (281)
Q Consensus 121 --~--------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~l~~~pl~h~~gl~~~~ 188 (281)
. .....++|.+ |+|||||||.|||||+||+|+++ .......... ..++|+.++.+|+.|++..++..
T Consensus 174 ~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~-~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~~~ 252 (613)
T COG1022 174 FLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLA-QVAGIDEVLPPIGPGDRVLSFLPLAHIFERAFEG 252 (613)
T ss_pred hhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHH-HHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHHHH
Confidence 0 0012357888 99999999999999999999999 8888888886 89999999999999999987654
Q ss_pred HhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 189 YGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 189 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
...++.|.++.. ..+++++++.++++|||.++ .+|-+|..+-+..
T Consensus 253 ~~~~~~g~~~~~--------~~~~~~~~~dl~~~rPt~m~---~VPRvwE~i~~~I 297 (613)
T COG1022 253 GLALYGGVTVLF--------KEDPRTLLEDLKEVRPTVMI---GVPRVWEKVYKGI 297 (613)
T ss_pred HHHhhcceEEEe--------cCCHHHHHHHHHHhCCeEEe---echHHHHHHHHHH
Confidence 555555554444 46899999999999999977 5556666554444
|
|
| >KOG1179|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-32 Score=237.32 Aligned_cols=233 Identities=22% Similarity=0.238 Sum_probs=195.0
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.=.+.|+.+++.+.++++|+++|+++. +..+.+||+|+.++++++|+.|..+|++.||.|+++++|.+|++...++++
T Consensus 73 rr~~~ti~~~F~~~vrr~p~k~aii~~--~~~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLa 150 (649)
T KOG1179|consen 73 RRERRTIAELFLSQVRRQPDKPAIIYE--GPFQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLA 150 (649)
T ss_pred hccCCcHHHHHHHHHHhCCCccEEEEe--CCCceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHH
Confidence 345669999999999999999999975 346899999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC----------------------------------------------------------cC
Q psy9113 99 RIGAVHSIVVSKCSGDDMST----------------------------------------------------------VP 120 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~----------------------------------------------------------~~ 120 (281)
++|++...||+++..+.+.| .+
T Consensus 151 KlGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~ 230 (649)
T KOG1179|consen 151 KLGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHP 230 (649)
T ss_pred hhCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCC
Confidence 99999999999999998888 00
Q ss_pred ----CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccC
Q psy9113 121 ----ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195 (281)
Q Consensus 121 ----~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G 195 (281)
......-.+++ .+|||||||.||+.+++|..... .....-..++++++|+++..+|++|.+|.+.++..++..|
T Consensus 231 vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~-~a~g~~~~~g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~G 309 (649)
T KOG1179|consen 231 VPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQ-GAAGFYYVFGMTADDVVYTTLPLYHSAAGILGIGGCLLHG 309 (649)
T ss_pred CCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHH-HHHHHHHHhCCCccceEEEcchhHHHHHHHHHHHHHHhcC
Confidence 01111124667 89999999999999999999888 6666777899999999999999999999999999999999
Q ss_pred ceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 196 ATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
+|+++- .+|++.++|+.+.+|++|+. .+.-++.+-+-........+--.++.+-..|+|
T Consensus 310 aT~Vlr------kKFSAS~FW~DC~k~~~Tv~-------QYIGElcRYLl~~p~~~~er~HkVRla~GNGLR 368 (649)
T KOG1179|consen 310 ATVVLR------KKFSASNFWDDCRKYNVTVI-------QYIGELCRYLLNQPPSPEERQHKVRLAYGNGLR 368 (649)
T ss_pred ceEEEe------cccchhhhHHHHHHhCCeee-------ehHHHHHHHHHcCCCChhhcCceEEEEecCCCC
Confidence 999999 59999999999999999994 355555555544333222233445555555554
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=253.64 Aligned_cols=230 Identities=26% Similarity=0.274 Sum_probs=180.5
Q ss_pred chhh-hhccCCCCCCCCCccccCCCC----CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 24 TGGH-VLTPLPGCTPMKPGAAGNDPD----DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 24 tl~~-~l~~~a~~~pd~~a~~~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
++.+ .|++.++.+||++|+++.+.+ ..+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+
T Consensus 175 n~~~~~l~~~~~~~pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~ 254 (728)
T PLN03052 175 NVAECCLTPKPSKTDDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAII 254 (728)
T ss_pred EHHHHHHHHHhccCCCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 4444 565655678999999875322 24689999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC---------------c-------C---------------------------------CC-
Q psy9113 99 RIGAVHSIVVSKCSGDDMST---------------V-------P---------------------------------AN- 122 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~---------------~-------~---------------------------------~~- 122 (281)
++|++++|+++.++.+++.+ . + +.
T Consensus 255 ~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~ 334 (728)
T PLN03052 255 LAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKLREGDMSWDD 334 (728)
T ss_pred HcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCccccccccCCccHHH
Confidence 99999999999988776554 0 0 00
Q ss_pred ----c------------hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHh
Q psy9113 123 ----S------------ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHT 185 (281)
Q Consensus 123 ----~------------~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~ 185 (281)
. ..+.++++ |+|||||||+||||+++|.+++. +.......++++++|+++...|++|++|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~-~~~~~~~~~~l~~~d~~~~~~~l~w~~g~- 412 (728)
T PLN03052 335 FLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLR-AAADAWAHLDIRKGDIVCWPTNLGWMMGP- 412 (728)
T ss_pred HHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHH-HHHHHHHhcCCCCCcEEEECCCcHHHhHH-
Confidence 0 00225678 99999999999999999998776 44444445788899999999999999997
Q ss_pred HHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 186 YVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 186 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
..++.+|..|+++++. ++ ..++..+++.++++++|++. .+|.++..+.+.-.. ...+|++|+.+++.|
T Consensus 413 ~~v~~~L~~Gat~vl~--~g---~p~~~~~~~~i~~~~vT~l~---~~Pt~l~~l~~~~~~----~~~dlssLr~i~s~G 480 (728)
T PLN03052 413 WLVYASLLNGATLALY--NG---SPLGRGFAKFVQDAKVTMLG---TVPSIVKTWKNTNCM----AGLDWSSIRCFGSTG 480 (728)
T ss_pred HHHHHHHHhCCEEEEe--CC---CCCCChHHHHHHHHCCCEEE---ECHHHHHHHHhcCCc----ccCChhheeEEEecC
Confidence 5788999999999999 54 23567799999999999976 555665555443211 446777887776666
Q ss_pred cc
Q psy9113 266 IR 267 (281)
Q Consensus 266 ~~ 267 (281)
..
T Consensus 481 e~ 482 (728)
T PLN03052 481 EA 482 (728)
T ss_pred CC
Confidence 53
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=249.90 Aligned_cols=225 Identities=24% Similarity=0.266 Sum_probs=189.2
Q ss_pred CCCceeccccccchhhhhccCCCCCCCCCccccCCC--CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHH
Q psy9113 12 KCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDP--DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLE 89 (281)
Q Consensus 12 ~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~ 89 (281)
...+..+.|.+.|+.+.+.+.++.+||++|+++.+. ..++.+||+||.++++++|+.|.+.|+++|++|+++++|+++
T Consensus 13 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e 92 (547)
T PRK13295 13 AASIAAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWE 92 (547)
T ss_pred HHhhcCCCCcCCCHHHHHHHHHHHCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChH
Confidence 345788999999999999999999999999986431 224799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCeEEEeecCCCCCCcCC----------c--C-------------------------------------
Q psy9113 90 IVVTMLACARIGAVHSIVVSKCSGDDMST----------V--P------------------------------------- 120 (281)
Q Consensus 90 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~----------~--~------------------------------------- 120 (281)
++++++||+++|++++|+++..+.+++.+ + .
T Consensus 93 ~~~~~la~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (547)
T PRK13295 93 FTVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEA 172 (547)
T ss_pred HHHHHHHHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHH
Confidence 99999999999999999998876554333 0 0
Q ss_pred ------C---C--------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhh
Q psy9113 121 ------A---N--------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWIT 182 (281)
Q Consensus 121 ------~---~--------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~ 182 (281)
+ . .....++++ ++|||||||.||+|+++|+++.. ........+++.++++++...|++|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~l~~~p~~h~~ 251 (547)
T PRK13295 173 LLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMA-NIVPYAERLGLGADDVILMASPMAHQT 251 (547)
T ss_pred HhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHH-HHHHHHHHhCCCCCCeEEEecCchhhh
Confidence 0 0 001225677 99999999999999999999988 666666778889999999999999999
Q ss_pred hHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcc
Q psy9113 183 GHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNT 246 (281)
Q Consensus 183 gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~ 246 (281)
|+...++.++..|+++++. + .++++.+++.++++++|.+. .+|.++..++.....
T Consensus 252 g~~~~~~~~l~~G~~~~~~--~----~~~~~~~~~~l~~~~vt~~~---~~p~~~~~l~~~~~~ 306 (547)
T PRK13295 252 GFMYGLMMPVMLGATAVLQ--D----IWDPARAAELIRTEGVTFTM---ASTPFLTDLTRAVKE 306 (547)
T ss_pred hHHHHHHHHHHcCCeEEeC--C----CCCHHHHHHHHHHcCCcEEE---ecHHHHHHHHhcccc
Confidence 9888899999999999998 4 67899999999999999965 445556666665443
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=253.05 Aligned_cols=211 Identities=15% Similarity=0.101 Sum_probs=173.0
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCC-CCeeeeHHHHHHHHHHHHHHHHHC---CCCCC-----------CEEEEEe
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPD-DYSRLTYKKLLEEVCKCANVLKSK---GVQKG-----------DRVAIYL 84 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~-~~~~~Ty~~l~~~~~~la~~L~~~---g~~~g-----------~~V~l~~ 84 (281)
....|+.++|.+.++++||++|+.+.+.+ .++.+||+|+.+++.++|++|.++ |+++| |+|++++
T Consensus 58 ~~~~~l~~~l~~~~~~~p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~ 137 (746)
T PTZ00342 58 YVYKHIMKLLLEKYKLNNNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYG 137 (746)
T ss_pred cccchHHHHHHHHHhhcCCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEc
Confidence 34569999999999999999999864222 358999999999999999999974 99998 9999999
Q ss_pred CCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC-----------------------------------cCC-C-c----
Q psy9113 85 PMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST-----------------------------------VPA-N-S---- 123 (281)
Q Consensus 85 ~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~-----------------------------------~~~-~-~---- 123 (281)
+|+++|+++++||+++|+++||+++.++.+++.+ +.. . .
T Consensus 138 ~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~ 217 (746)
T PTZ00342 138 SNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSKEIN 217 (746)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCcccccc
Confidence 9999999999999999999999999999998888 000 0 0
Q ss_pred --------------------------------------------------------------------------------
Q psy9113 124 -------------------------------------------------------------------------------- 123 (281)
Q Consensus 124 -------------------------------------------------------------------------------- 123 (281)
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (746)
T PTZ00342 218 INKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTTNYK 297 (746)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhcccCCC
Confidence
Q ss_pred --hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhh--ccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceE
Q psy9113 124 --ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV--FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATS 198 (281)
Q Consensus 124 --~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~ 198 (281)
...+++++ |+|||||||.||||++||+++.. ........ ......+++++++|++|++++. ..+.+++.|+++
T Consensus 298 ~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~-~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~-~~~~~l~~G~~i 375 (746)
T PTZ00342 298 IQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYN-TVVPLCKHSIFKKYNPKTHLSYLPISHIYERV-IAYLSFMLGGTI 375 (746)
T ss_pred CCCCCccceEEEEEcCCCCCCCCEEEEccHHHHH-HHHHHhhcccccCCCCCeEEEeCcHHHHHHHH-HHHHHHHcCCEE
Confidence 01125678 99999999999999999999998 55443322 1223568999999999999986 567889999999
Q ss_pred EEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 199 VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 199 v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
++. + .++..+++.|+++++|+++ .+|.++..+.+
T Consensus 376 ~~~--~-----~~~~~l~~di~~~~pT~~~---~VP~v~~~i~~ 409 (746)
T PTZ00342 376 NIW--S-----KDINYFSKDIYNSKGNILA---GVPKVFNRIYT 409 (746)
T ss_pred EEe--C-----CCHHHHHHHHHHhCCcEEE---chHHHHHHHHH
Confidence 998 3 3789999999999999966 45555666654
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=250.11 Aligned_cols=208 Identities=20% Similarity=0.210 Sum_probs=176.8
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++.++|++.++++||++|+++ .++.+||+||.+++.++|+.|.++|+++||+|+++++|+++++++++||+++|
T Consensus 6 ~~~~~~~~~~~~~~~p~~~a~~~----~~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~G 81 (563)
T PLN02860 6 QAHICQCLTRLATLRGNAVVTIS----GNRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACAG 81 (563)
T ss_pred hhHHHHHHHHHHHhcCCceEEec----CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhcc
Confidence 34889999999999999999984 45789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------------c-----C------------------------C---------
Q psy9113 102 AVHSIVVSKCSGDDMST----------------------V-----P------------------------A--------- 121 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------------~-----~------------------------~--------- 121 (281)
++++|+++.++.+++.+ . + .
T Consensus 82 av~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (563)
T PLN02860 82 GIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALG 161 (563)
T ss_pred EEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhccCccc
Confidence 99999999876665444 0 0 0
Q ss_pred ----Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCc
Q psy9113 122 ----NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196 (281)
Q Consensus 122 ----~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~ 196 (281)
......++++ ++|||||||.||||+++|+++.. ........+++.++|+++...|++|.+|+. .++.++..|+
T Consensus 162 ~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~ 239 (563)
T PLN02860 162 TTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIV-QSLAKIAIVGYGEDDVYLHTAPLCHIGGLS-SALAMLMVGA 239 (563)
T ss_pred cccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHH-HHHHHHhhcCCCCCCEEEEecCchhhccHH-HHHHHHHcCc
Confidence 0001225667 99999999999999999999987 555555667888999999999999999984 6789999999
Q ss_pred eEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 197 TSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
++++. + .+++..+++.++++++|.++ .+|.++..+++..
T Consensus 240 ~~v~~--~----~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~ 278 (563)
T PLN02860 240 CHVLL--P----KFDAKAALQAIKQHNVTSMI---TVPAMMADLISLT 278 (563)
T ss_pred eEEec--C----CCCHHHHHHHHHHhCCeeEE---eChHHHHHHHHhh
Confidence 99998 5 67999999999999999977 5566666766654
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=248.21 Aligned_cols=235 Identities=14% Similarity=0.058 Sum_probs=188.7
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTM 94 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~ 94 (281)
..-..|...++.+.+.+.++++|+++|+.+ ...+.+||+||.++++++|+.|.+. +||+|+++++|++++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~---~~~~~~Ty~el~~~~~~lA~~L~~~---~gd~Val~~~n~~e~~~~~ 84 (539)
T PRK06334 11 KRGKLRSGKTVLESFLKLCSEMTTATVCWD---EQLGKLSYNQVRKAVIALATKVSKY---PDQHIGIMMPASAGAYIAY 84 (539)
T ss_pred hccccCcCCcHHHHHHHHHHhCCCceEEEe---CCCCcccHHHHHHHHHHHHHHHhhc---cCCeEEEEcCCchHHHHHH
Confidence 344567778999999999999999999885 2346899999999999999999873 8999999999999999999
Q ss_pred HHHHHhcCeEEEeecCCCCCCcCC----------------------c-CC----C-------------------------
Q psy9113 95 LACARIGAVHSIVVSKCSGDDMST----------------------V-PA----N------------------------- 122 (281)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~~~~~~----------------------~-~~----~------------------------- 122 (281)
+||+++|++++|+++.++.+++.+ . .. +
T Consensus 85 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 164 (539)
T PRK06334 85 FATLLSGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYM 164 (539)
T ss_pred HHHHhcCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhh
Confidence 999999999999999998877765 0 00 0
Q ss_pred -------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHH
Q psy9113 123 -------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVV 188 (281)
Q Consensus 123 -------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~ 188 (281)
.....++++ ++|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+|+...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~ 243 (539)
T PRK06334 165 SIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLA-NQRACLKFFSPKEDDVMMSFLPPFHAYGFNSCT 243 (539)
T ss_pred cCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHH-HHHHHHHhcCCCCCceEEEecchHhhhhhHHHH
Confidence 011235677 99999999999999999999988 666666677888899999999999999987778
Q ss_pred HhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 189 YGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 189 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
+.++..|+++++. +. .++++.+++.|+++++|.+. .+|.++..+++....... ...+|+.+..+|+.-
T Consensus 244 ~~~l~~G~~vv~~--~~---~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~i~~gG~~l 311 (539)
T PRK06334 244 LFPLLSGVPVVFA--YN---PLYPKKIVEMIDEAKVTFLG---STPVFFDYILKTAKKQES-CLPSLRFVVIGGDAF 311 (539)
T ss_pred HHHHHcCCeEEEe--cC---CCCHHHHHHHHHHhCCcEEE---ecHHHHHHHHHhhhhccc-ccccccEEEECCccC
Confidence 8999999999987 42 47899999999999999977 666666777765433211 223444444445443
|
|
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=250.13 Aligned_cols=236 Identities=24% Similarity=0.292 Sum_probs=177.4
Q ss_pred chhhhhccCCCC--CCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 24 TGGHVLTPLPGC--TPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 24 tl~~~l~~~a~~--~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
+..++++++++. +||++|+++.. ....+++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||++
T Consensus 60 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~ 139 (647)
T PTZ00237 60 TCYNVLDIHVKNPLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCAR 139 (647)
T ss_pred HHHHHHHHhhcccCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 456778787654 79999998742 22357899999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC-----------c-C-----------------------------------C-----------
Q psy9113 100 IGAVHSIVVSKCSGDDMST-----------V-P-----------------------------------A----------- 121 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~-----------~-~-----------------------------------~----------- 121 (281)
+|++++|+++.++.+++.+ . . .
T Consensus 140 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 219 (647)
T PTZ00237 140 IGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIE 219 (647)
T ss_pred hCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcCCccccccccccc
Confidence 9999999998877665444 0 0 0
Q ss_pred -----C-----------------------chhhhcccc-eeeeecCCCCCceEEEechh-HHHHHHHhhhhhccCCCCCE
Q psy9113 122 -----N-----------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGG-YLLYAATTHKYVFDYKPGDI 171 (281)
Q Consensus 122 -----~-----------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~-l~~~~~~~~~~~~~~~~~~~ 171 (281)
+ ...+.++++ |+|||||||.||||+++|.+ +.. .............+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~-~~~~~~~~~~~~~~d~ 298 (647)
T PTZ00237 220 TIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVG-LKYYWRSIIEKDIPTV 298 (647)
T ss_pred ccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHH-HHHHHHHhcCCCCCcE
Confidence 0 001125678 99999999999999999998 444 4444455566777899
Q ss_pred EEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccc--cccccccceeeeeeccceeccCCchhHHHHHHHHhhccc-c
Q psy9113 172 YWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIY--WCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTN-F 248 (281)
Q Consensus 172 ~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~-~ 248 (281)
+++..|++|+.+. ..++.+|..|+++++. ++.+. ...+..+++.++++++|++. .+|.++..+++..... .
T Consensus 299 ~~~~~~~~w~~~~-~~~~~~l~~G~t~v~~--~~~~~~p~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~~~~ 372 (647)
T PTZ00237 299 VFSHSSIGWVSFH-GFLYGSLSLGNTFVMF--EGGIIKNKHIEDDLWNTIEKHKVTHTL---TLPKTIRYLIKTDPEATI 372 (647)
T ss_pred EEEcCCCceEeeH-HHHHHHHhCCcEEEEe--CCCCCCCCCchHHHHHHHHHhCeEEEE---eCHHHHHHHHhhCccccc
Confidence 9999999998765 4688999999999998 43211 12267899999999999977 5566666666532211 1
Q ss_pred ccccccchhhhhccCCCc
Q psy9113 249 FCILYTISSLMWAGSLDI 266 (281)
Q Consensus 249 ~~~~~~L~sl~~~g~~g~ 266 (281)
....+++++++.+...|.
T Consensus 373 ~~~~~~l~~Lr~i~~~G~ 390 (647)
T PTZ00237 373 IRSKYDLSNLKEIWCGGE 390 (647)
T ss_pred cccccCcchheEEEecCc
Confidence 113456677766555554
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=248.06 Aligned_cols=227 Identities=19% Similarity=0.183 Sum_probs=185.5
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
++.+++++.++++||++|+++ ..+.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 50 ~~~~~~~~~a~~~pd~~Al~~----~~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G~~ 125 (549)
T PRK07788 50 PFAGLVAHAARRAPDRAALID----ERGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGAR 125 (549)
T ss_pred hHHHHHHHHHHHCCCceEEEE----CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCE
Confidence 899999999999999999995 4678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC----------------------cC-------------CC----------------------chhh
Q psy9113 104 HSIVVSKCSGDDMST----------------------VP-------------AN----------------------SERE 126 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~----------------------~~-------------~~----------------------~~~~ 126 (281)
++|+++.++.+++.+ .. .. ....
T Consensus 126 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (549)
T PRK07788 126 IILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAPLPKP 205 (549)
T ss_pred EEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCCCCCC
Confidence 999999988877665 00 00 0001
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
.++.+ ++|||||||.||+|+++|+++.. .........++.++++++...|++|.+|+. .++.++..|+++++. +
T Consensus 206 ~~~~~~i~~TSGTTG~PKgv~~s~~~~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~l~~G~~~v~~--~- 280 (549)
T PRK07788 206 PKPGGIVILTSGTTGTPKGAPRPEPSPLA-PLAGLLSRVPFRAGETTLLPAPMFHATGWA-HLTLAMALGSTVVLR--R- 280 (549)
T ss_pred CCCCcEEEECCCCCCCCCEEeccCccHHH-HHHHHHhhCCCCcCCeEEEccchHHHHHHH-HHHHHHHhCCEEEEC--C-
Confidence 24556 99999999999999999999988 666666677888899999999999999984 678899999999988 4
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccc-ccccccchhhhhccCCC
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNF-FCILYTISSLMWAGSLD 265 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~L~sl~~~g~~g 265 (281)
.++++.+++.++++++|.++ .+|.++..+++...... .....+|+.+..+|+.-
T Consensus 281 ---~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l 335 (549)
T PRK07788 281 ---RFDPEATLEDIAKHKATALV---VVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSAL 335 (549)
T ss_pred ---CCCHHHHHHHHHHhCCcEEE---EHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCC
Confidence 67999999999999999977 66667777776543311 00223445445555543
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=249.13 Aligned_cols=238 Identities=16% Similarity=0.079 Sum_probs=176.4
Q ss_pred ccchhhhhccCCCCCCCCCccccCCC--CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDP--DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
..|+.+.|++.++++||++|+++.+. +..+.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus 48 ~~~l~~~l~~~a~~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 127 (624)
T PRK12582 48 PRSIPHLLAKWAAEAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQ 127 (624)
T ss_pred ccCHHHHHHHHHHHCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 55899999999999999999986432 2347999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCC-----CCcCC----------------------------------cCC------------------C
Q psy9113 100 IGAVHSIVVSKCSG-----DDMST----------------------------------VPA------------------N 122 (281)
Q Consensus 100 ~G~~~v~l~~~~~~-----~~~~~----------------------------------~~~------------------~ 122 (281)
+|++++|+++.++. +++.+ ... .
T Consensus 128 ~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 207 (624)
T PRK12582 128 AGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIAFADLAATPPT 207 (624)
T ss_pred cCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCcccccccHHHHhhcCCc
Confidence 99999999998764 22222 000 0
Q ss_pred -------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCC---CCEEEEeCchhhhhhHhHHHHhh
Q psy9113 123 -------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKP---GDIYWCTADVGWITGHTYVVYGP 191 (281)
Q Consensus 123 -------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~---~~~~l~~~pl~h~~gl~~~~~~~ 191 (281)
.....++++ ++|||||||.||||+++|+++.. ............. +++++.++|++|.+|+...++.+
T Consensus 208 ~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~~~~~~l~~lPl~h~~g~~~~~~~~ 286 (624)
T PRK12582 208 AAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCA-NIAMQEQLRPREPDPPPPVSLDWMPWNHTMGGNANFNGL 286 (624)
T ss_pred chhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHH-HHHHHHHhccccCCCCCceEEEechHHHHHhHHHHHHHH
Confidence 001235677 99999999999999999999987 5544444444333 57999999999999987778889
Q ss_pred hccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 192 LANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 192 l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
+..|+++++. +..........+++.++++++|.++ .+|.++..+++.+.........++++++.+...|
T Consensus 287 l~~G~tvvl~--~~~~~~~~~~~~~~~i~~~~~t~~~---~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gG 355 (624)
T PRK12582 287 LWGGGTLYID--DGKPLPGMFEETIRNLREISPTVYG---NVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGG 355 (624)
T ss_pred HhCceEEEEc--CCCcccchHHHHHHHHHhcCCeEEe---ccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecC
Confidence 9999999987 4211111234567778899999966 4445556665554332211223345555554444
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=239.74 Aligned_cols=226 Identities=22% Similarity=0.247 Sum_probs=186.8
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+|+.+.|.+.++.+||++|+.+ .++.+||+|+.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|+
T Consensus 2 ~~~~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~ 77 (483)
T PRK03640 2 ETMPNWLKQRAFLTPDRTAIEF----EEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGA 77 (483)
T ss_pred CcHHHHHHHHHHhCCCceEEEe----CCeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhCCc
Confidence 6899999999999999999995 458999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-----------c---------------------------CCCchhhhcccc-eeeeecCCCCCc
Q psy9113 103 VHSIVVSKCSGDDMST-----------V---------------------------PANSERERKLKL-RKVVTGSTGKPK 143 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-----------~---------------------------~~~~~~~~~~~~-i~~TSGTTG~PK 143 (281)
+++|+++..+.+++.. . ........++++ ++|||||||.||
T Consensus 78 ~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK 157 (483)
T PRK03640 78 VAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPK 157 (483)
T ss_pred EEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhccccHHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCc
Confidence 9999999887776554 0 000112235777 999999999999
Q ss_pred eEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeec
Q psy9113 144 GVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYV 223 (281)
Q Consensus 144 ~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~ 223 (281)
+|.++|.++.. ........++++++|+++..+|++|.+|+. .++.++..|+++++. + ..++..+++.+++++
T Consensus 158 ~v~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~--~----~~~~~~~~~~i~~~~ 229 (483)
T PRK03640 158 GVIQTYGNHWW-SAVGSALNLGLTEDDCWLAAVPIFHISGLS-ILMRSVIYGMRVVLV--E----KFDAEKINKLLQTGG 229 (483)
T ss_pred EEEEecHHHHH-HHHHHHHhcCCCcCcEEEEecCHHHHHHHH-HHHHHHhcCCEEEec--C----CCCHHHHHHHHHHhC
Confidence 99999999887 555555667889999999999999999975 678999999999998 5 578999999999999
Q ss_pred cceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 224 VYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 224 vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
+|++. .+|.++..++..+.... ....|+.+..+|+.-
T Consensus 230 ~t~l~---~~P~~~~~l~~~~~~~~--~~~~lr~~~~~g~~~ 266 (483)
T PRK03640 230 VTIIS---VVSTMLQRLLERLGEGT--YPSSFRCMLLGGGPA 266 (483)
T ss_pred CcEEE---eHHHHHHHHHhCcCccc--cCCcceEEEEcCCCC
Confidence 99977 66677777776554321 223455555555543
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=243.13 Aligned_cols=215 Identities=25% Similarity=0.324 Sum_probs=181.6
Q ss_pred ccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHH
Q psy9113 18 TFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97 (281)
Q Consensus 18 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~ 97 (281)
+.|...|+.+++++.++.+||++|+++ ++++.+||+|+.+++.++|+.|++.|+++||+|+++++|+++++++++||
T Consensus 18 ~~~~~~~l~~~~~~~~~~~pd~~a~~~---~~~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~ 94 (547)
T PRK06087 18 GYWGDASLADYWQQTARAMPDKIAVVD---NHGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLAC 94 (547)
T ss_pred CCCCCCCHHHHHHHHHHHCCCceEEEc---CCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 378888999999999999999999986 34478999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeecCCCCCCcCC-----------cC--------------------C-------------------------
Q psy9113 98 ARIGAVHSIVVSKCSGDDMST-----------VP--------------------A------------------------- 121 (281)
Q Consensus 98 ~~~G~~~v~l~~~~~~~~~~~-----------~~--------------------~------------------------- 121 (281)
+++|++++|+++..+.+++.+ .+ .
T Consensus 95 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (547)
T PRK06087 95 LKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIAD 174 (547)
T ss_pred HHcCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhcc
Confidence 999999999999887665533 00 0
Q ss_pred ------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhcc
Q psy9113 122 ------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLAN 194 (281)
Q Consensus 122 ------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~ 194 (281)
......++++ ++|||||||.||+|.++|.++.. .........++.++++++...|++|.+|+...++.++..
T Consensus 175 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~ 253 (547)
T PRK06087 175 YEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILA-SERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLI 253 (547)
T ss_pred CCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHH-HHHHHHHhcCCCCCCeEEEecchHHHHHHHHHHHHHHhc
Confidence 0011225677 99999999999999999999987 666666677888999999999999999988889999999
Q ss_pred CceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhc
Q psy9113 195 GATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLN 245 (281)
Q Consensus 195 G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~ 245 (281)
|+++++. + .+++..+++.+++++++.++ +.|+.++ .+++...
T Consensus 254 g~~~~~~--~----~~~~~~~~~~i~~~~~t~~~--~~~~~~~-~~l~~~~ 295 (547)
T PRK06087 254 GARSVLL--D----IFTPDACLALLEQQRCTCML--GATPFIY-DLLNLLE 295 (547)
T ss_pred CCEEEec--C----CCCHHHHHHHHHHcCCCEEe--ccHHHHH-HHHhccc
Confidence 9999998 4 67899999999999999944 4555544 4455443
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=226.89 Aligned_cols=234 Identities=19% Similarity=0.237 Sum_probs=195.6
Q ss_pred eeccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHH
Q psy9113 16 VDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95 (281)
Q Consensus 16 ~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~l 95 (281)
..++|+++|+.++|.+.|+++||++|++ ++++.+||++|.+++.++|..|+++|+++||+|.+.++|..+|++.++
T Consensus 21 ~~GyW~d~~l~d~L~~~A~~~pdriAv~----d~~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~F 96 (542)
T COG1021 21 EKGYWQDRTLTDILTDHAARYPDRIAVI----DGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFF 96 (542)
T ss_pred hcCcccCCcHHHHHHHHHhhcCCceEEe----cCcccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHH
Confidence 3579999999999999999999999999 467889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeecCCCCCCcCC---------------------------------------------------------
Q psy9113 96 ACARIGAVHSIVVSKCSGDDMST--------------------------------------------------------- 118 (281)
Q Consensus 96 A~~~~G~~~v~l~~~~~~~~~~~--------------------------------------------------------- 118 (281)
|++++|+.+|..-|.....|+.+
T Consensus 97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~ 176 (542)
T COG1021 97 ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHP 176 (542)
T ss_pred HHHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCc
Confidence 99999999998777666666655
Q ss_pred ---cCCCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHh-HHHHhhhc
Q psy9113 119 ---VPANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHT-YVVYGPLA 193 (281)
Q Consensus 119 ---~~~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~-~~~~~~l~ 193 (281)
.......+.++++ .+.+.||||.||.+..+|..... +.......++++++.++++.+|..|-+.+. =+.+..++
T Consensus 177 a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Y-sv~aSaEiC~~~~~tvyL~~LP~AHNfplssPG~LGv~~ 255 (542)
T COG1021 177 AGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYY-SVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFL 255 (542)
T ss_pred cccCCcCCCCCCCceEEEEecCCCCCCCccccccccceee-eeeehhhhhCcCccceEEEecccccCCCCCCcchhheee
Confidence 0000112235677 89999999999999999999888 888888899999999999999999865442 25688899
Q ss_pred cCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 194 NGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 194 ~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
.|+++|+. + ..+|+..+..|++++||++-++|....+|-+..+. ...+|+||+++-..|.|
T Consensus 256 agG~VVla--~----~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~-------~~~~LsSLrllQVGGar 316 (542)
T COG1021 256 AGGTVVLA--P----DPSPELCFPLIERHGVTVTALVPPLASLWLQAAEW-------ERADLSSLRLLQVGGAR 316 (542)
T ss_pred eccEEEEC--C----CCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc-------ccCCchheeEEeecCcc
Confidence 99999999 5 56899999999999999988877777777653332 44677777766555543
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=245.40 Aligned_cols=211 Identities=21% Similarity=0.236 Sum_probs=181.7
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
....|+.+.|.+.++++||++|+++ ..+.+||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||++
T Consensus 34 ~~~~tl~~~l~~~a~~~p~~~Ai~~----~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~ 109 (600)
T PRK08279 34 DSKRSLGDVFEEAAARHPDRPALLF----EDQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAK 109 (600)
T ss_pred CCcccHHHHHHHHHHhCCCCcEEEe----CCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4566899999999999999999995 468899999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC--------------------------cCC----------------------------C---
Q psy9113 100 IGAVHSIVVSKCSGDDMST--------------------------VPA----------------------------N--- 122 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~--------------------------~~~----------------------------~--- 122 (281)
+|++++++++..+.+++.+ ... +
T Consensus 110 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (600)
T PRK08279 110 LGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAPTTN 189 (600)
T ss_pred cCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCCccC
Confidence 9999999999988776554 000 0
Q ss_pred ----chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 123 ----SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 123 ----~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.....++++ ++|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+...++.++..|++
T Consensus 190 ~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~ 268 (600)
T PRK08279 190 PASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLK-AMGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGAT 268 (600)
T ss_pred CCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHH-HHHHHHHhcCCCCCcEEEEecCchhhhhHHHHHHHHHhcCcE
Confidence 001235677 99999999999999999999998 777777778899999999999999999998788888999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
+++. + .+++..+++.++++++|++. .+|.++..+++..
T Consensus 269 ~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~p~l~~~l~~~~ 306 (600)
T PRK08279 269 LALR--R----KFSASRFWDDVRRYRATAFQ---YIGELCRYLLNQP 306 (600)
T ss_pred EEEc--C----CCCHHHHHHHHHHhcceEEe---ehHHHHHHHHhCC
Confidence 9988 4 68899999999999999976 5556666655543
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=242.16 Aligned_cols=230 Identities=31% Similarity=0.442 Sum_probs=184.5
Q ss_pred hhhhhccCCC-CCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 25 GGHVLTPLPG-CTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 25 l~~~l~~~a~-~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
..+.+.+.++ .+||++|+.+.+.+..+.+||+||.+++.++|+.|.++|+++||+|+++++|+++++++++||+++|++
T Consensus 45 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~G~v 124 (570)
T PRK04319 45 AYEAIDRHADGGRKDKVALRYLDASRKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAI 124 (570)
T ss_pred HHHHHHHhhccCCCCceEEEEECCCCceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 4568888876 579999998754345679999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC-------------------c-----CC---------C-----------------------chhhh
Q psy9113 104 HSIVVSKCSGDDMST-------------------V-----PA---------N-----------------------SERER 127 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~-------------------~-----~~---------~-----------------------~~~~~ 127 (281)
++|+++.++.+++.+ . +. . .....
T Consensus 125 ~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (570)
T PRK04319 125 VGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDR 204 (570)
T ss_pred EcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcCCccccCC
Confidence 999999988776654 0 00 0 00112
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCc
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGE 206 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~ 206 (281)
++++ ++|||||||.||||+++|+++.. ........+++.++|++++..|++|.+|+...++.++..|+++++. +.
T Consensus 205 ~~~a~i~~TSGTTG~PKgV~~s~~~l~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~--~~- 280 (570)
T PRK04319 205 EDGAILHYTSGSTGKPKGVLHVHNAMLQ-HYQTGKYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVID--GG- 280 (570)
T ss_pred CCCEEEEeCCCCCCCCCEEEEecHHHHH-HHHHHHHhcCCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEE--CC-
Confidence 4677 99999999999999999999988 6666667778889999999999999999888899999999999998 42
Q ss_pred cccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 207 IYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 207 ~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
.++++.+++.++++++|+++ .+|.++..+++...... ...++++++.+...|
T Consensus 281 --~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~--~~~~~~~lr~~~~gG 332 (570)
T PRK04319 281 --RFSPERWYRILEDYKVTVWY---TAPTAIRMLMGAGDDLV--KKYDLSSLRHILSVG 332 (570)
T ss_pred --CCCHHHHHHHHHHcCCeEEE---eCHHHHHHHHhcCCccc--ccCCcccceEEEEcc
Confidence 57899999999999999976 55556666655432111 234555665554444
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=242.46 Aligned_cols=235 Identities=15% Similarity=0.170 Sum_probs=189.3
Q ss_pred eeccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHH
Q psy9113 16 VDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95 (281)
Q Consensus 16 ~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~l 95 (281)
.++.|+..|+.+++.+.++.+|+++|+++ .++.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++
T Consensus 16 ~~~~~~~~~l~~~~~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~l 91 (527)
T TIGR02275 16 EKGYWQDKPLTDILRDQAARYPDAIAIIC----GNRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFF 91 (527)
T ss_pred hcCcccCCcHHHHHHHHHHHCCCceEEEe----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 46789999999999999999999999985 46899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeecCCCCCCcCC---------------------------------------cCC---------------
Q psy9113 96 ACARIGAVHSIVVSKCSGDDMST---------------------------------------VPA--------------- 121 (281)
Q Consensus 96 A~~~~G~~~v~l~~~~~~~~~~~---------------------------------------~~~--------------- 121 (281)
||+++|++++++++..+.+++.+ ...
T Consensus 92 a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (527)
T TIGR02275 92 ALLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLESP 171 (527)
T ss_pred HHHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhCc
Confidence 99999999999988766544433 000
Q ss_pred -----Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhH-HHHhhhcc
Q psy9113 122 -----NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY-VVYGPLAN 194 (281)
Q Consensus 122 -----~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~-~~~~~l~~ 194 (281)
......++++ ++|||||||.||+|+++|+++.. ..........+.++|+++..+|++|.+|+.. .++.++..
T Consensus 172 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~ 250 (527)
T TIGR02275 172 AEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYY-SVRRSVEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYA 250 (527)
T ss_pred CccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHH-HHHHHHhhcCCCcCCEEEECCChHhhhhhhHHHHHHHHhc
Confidence 0011235677 99999999999999999999988 6666666778889999999999999998754 47889999
Q ss_pred CceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 195 GATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 195 G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
|+++++. + .+++..+++.++++++|.+. .+|.++..+++....... ...+++.+..+|+.-
T Consensus 251 G~~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~~~~-~~~~lr~~~~gG~~l 311 (527)
T TIGR02275 251 GGCVVLA--P----DPSPTDCFPLIERHKVTVTA---LVPPAVALWMQAASKSRY-DLSSLKLLQVGGAKF 311 (527)
T ss_pred CCeEEEC--C----CCCHHHHHHHHHHhCCeEEE---ecHHHHHHHHhCccccCC-CccceEEEEEcCCCC
Confidence 9999988 4 56889999999999999977 555566666655543221 223444444444433
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=242.25 Aligned_cols=223 Identities=21% Similarity=0.221 Sum_probs=177.3
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.|+.+.|.+.|+++|+++|+++. +.++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 14 ~~~~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~G~ 91 (540)
T PRK05857 14 STVLDRVFEQARQQPEAIALRRC--DGTSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGA 91 (540)
T ss_pred cchHHHHHHHHhhCCCcEEEeec--CCCceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHcCe
Confidence 37899999999999999999853 3356899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------------------cC-----C-------------------------Cchhhhccc
Q psy9113 103 VHSIVVSKCSGDDMST----------------------VP-----A-------------------------NSERERKLK 130 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------------------~~-----~-------------------------~~~~~~~~~ 130 (281)
+++|+++.++.+++.+ +. . ......+++
T Consensus 92 v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (540)
T PRK05857 92 IAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDP 171 (540)
T ss_pred EEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccccccccccCCCCCCe
Confidence 9999999888877665 00 0 001123567
Q ss_pred c-eeeeecCCCCCceEEEechhHHHHHHHhhh----hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 131 L-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK----YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 131 ~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
+ ++|||||||.||||.++|+++.. ...... ..++...+++.++.+|++|.+|+. ..+.+++.|+++++.
T Consensus 172 a~i~~TSGTTG~PKgV~~sh~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~l~-~~~~~l~~G~~~v~~---- 245 (540)
T PRK05857 172 LAMIFTSGTTGEPKAVLLANRTFFA-VPDILQKEGLNWVTWVVGETTYSPLPATHIGGLW-WILTCLMHGGLCVTG---- 245 (540)
T ss_pred EEEEeCCCCCCCCCeEEEechhhhh-hhHHhhhccccccccccCceeeecCCccccchHH-HHHHHhhcceeEEec----
Confidence 7 99999999999999999999877 433222 123455678999999999999985 678899999998765
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccC
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGS 263 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~ 263 (281)
..++..+++.+++|++|.++ .+|.++..++..... ...++++++.+..
T Consensus 246 ---~~~~~~~~~~i~~~~it~~~---~~P~~~~~l~~~~~~----~~~~~~~lr~~~~ 293 (540)
T PRK05857 246 ---GENTTSLLEILTTNAVATTC---LVPTLLSKLVSELKS----ANATVPSLRLVGY 293 (540)
T ss_pred ---CCChhHHHHHHHhcCcceEE---eChHHHHHHHhcccc----CCCcCccceEEEE
Confidence 45788999999999999977 566666676665433 2234555554433
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=242.20 Aligned_cols=222 Identities=23% Similarity=0.281 Sum_probs=186.6
Q ss_pred CCceeccccccchhhhhccCCCCCCCCCccccC--CCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHH
Q psy9113 13 CSIVDTFWQTETGGHVLTPLPGCTPMKPGAAGN--DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEI 90 (281)
Q Consensus 13 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~--~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~ 90 (281)
....+++|...|+.+.+.+.++.+|+++|++.. ..+.++.+||+||++++.++|..|++.|+++|++|+++++|++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~ 91 (538)
T TIGR03208 12 ASKAAGLWRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEF 91 (538)
T ss_pred hhhhcCccccCcHHHHHHHHHHHCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 456788998899999999999999999998753 122457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEeecCCCCCCcCC----------c--C--------------------------------------
Q psy9113 91 VVTMLACARIGAVHSIVVSKCSGDDMST----------V--P-------------------------------------- 120 (281)
Q Consensus 91 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~----------~--~-------------------------------------- 120 (281)
+++++||+++|++++|+++..+.+++.+ + +
T Consensus 92 ~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (538)
T TIGR03208 92 TALYLACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRV 171 (538)
T ss_pred HHHHHHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHH
Confidence 9999999999999999998877665543 0 0
Q ss_pred --------CC--------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhh
Q psy9113 121 --------AN--------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITG 183 (281)
Q Consensus 121 --------~~--------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g 183 (281)
.. .....++++ ++|||||||.||+|+++|+++.. ........+++..+|+++..+|++|..|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~pl~h~~g 250 (538)
T TIGR03208 172 LMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFS-NIHPYAERLELGGGDVILMASPMAHQTG 250 (538)
T ss_pred hhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHH-HHHHHHhhcCCCCCCeEEEeCCchhHHH
Confidence 00 011235677 99999999999999999999988 6666667778888999999999999999
Q ss_pred HhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 184 HTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 184 l~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
+...++.++..|+++++. + .++++.+++.++++++|.+. ..|.++..++...
T Consensus 251 ~~~~~~~~l~~g~~~~~~--~----~~~~~~~~~~l~~~~vt~~~---~~p~~~~~l~~~~ 302 (538)
T TIGR03208 251 FMYGLMMPLILNATAVLQ--D----IWNPARAAELIRETGVTFTM---ASTPFLTDLCRAV 302 (538)
T ss_pred HHHHHHHHHHcCCEEEec--C----ccCHHHHHHHHHHhCCeEEe---cCHHHHHHHHhch
Confidence 888899999999999998 4 67999999999999999965 4444555655544
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=240.26 Aligned_cols=233 Identities=19% Similarity=0.117 Sum_probs=187.8
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
|+.+++.+.++++||++|+++. ++.+.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 17 ~l~~~l~~~a~~~p~~~ai~~~--~~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 94 (534)
T PRK05852 17 RIADLVEVAATRLPEAPALVVT--ADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV 94 (534)
T ss_pred cHHHHHHHHHHhCCCCcEEEec--CCCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE
Confidence 7999999999999999998863 33468999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC----------c-----------CC------------Cc------------------------hhh
Q psy9113 104 HSIVVSKCSGDDMST----------V-----------PA------------NS------------------------ERE 126 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~----------~-----------~~------------~~------------------------~~~ 126 (281)
++++++.++.+++.+ + .. .. ...
T Consensus 95 ~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (534)
T PRK05852 95 VVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGL 174 (534)
T ss_pred EeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccCCCccccccCCC
Confidence 999999888765444 0 00 00 000
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
.++.+ ++|||||||.||+|.++|+++.. ........+++.++|++++..|++|.+|+...++.++..|+++++. +.
T Consensus 175 ~~~~a~il~TSGTTG~PKgv~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~--~~ 251 (534)
T PRK05852 175 RPDDAMIMFTGGTTGLPKMVPWTHANIAS-SVRAIITGYRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLP--AR 251 (534)
T ss_pred CCCceEEEeCCCCCCCCcEEEecHHHHHH-HHHHHHHHhCCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeC--CC
Confidence 14567 99999999999999999999988 7777777788899999999999999999988899999999998886 21
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccc-cccccchhhhhccCCCc
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFF-CILYTISSLMWAGSLDI 266 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~-~~~~~L~sl~~~g~~g~ 266 (281)
..+++..+++.++++++|.++ .+|.++..+++....... .....++.+..+|+...
T Consensus 252 --~~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~ 308 (534)
T PRK05852 252 --GRFSAHTFWDDIKAVGATWYT---AVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLT 308 (534)
T ss_pred --cCcCHHHHHHHHHHcCCcEEE---cChHHHHHHHhhcccccccccCCCeeEEEECCCCCC
Confidence 257889999999999999977 556666777665543211 12334555555555433
|
|
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=242.78 Aligned_cols=232 Identities=26% Similarity=0.276 Sum_probs=178.1
Q ss_pred chhhhhccCCCCCCCCCccccCC-CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGND-PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~-~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
|+.+.+.+. .+|+++|+++.+ .+..+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 87 n~~~~~~~~--~~~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Ga 164 (655)
T PRK03584 87 NYAENLLRH--RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGA 164 (655)
T ss_pred eHHHHhhcc--CCCCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Confidence 666666543 579999998753 23357899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC--------------------------------------------cCCC----------------
Q psy9113 103 VHSIVVSKCSGDDMST--------------------------------------------VPAN---------------- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~--------------------------------------------~~~~---------------- 122 (281)
+++|+++.++.+++.+ .+..
T Consensus 165 v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 244 (655)
T PRK03584 165 IWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWE 244 (655)
T ss_pred EEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHH
Confidence 9999999887654432 0000
Q ss_pred -------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHH
Q psy9113 123 -------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVV 188 (281)
Q Consensus 123 -------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~ 188 (281)
.....++++ |+|||||||.||||+++|++++..........+++.++|+++...++.|.++. .+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~ 322 (655)
T PRK03584 245 DFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN--WL 322 (655)
T ss_pred HHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH--HH
Confidence 001125778 99999999999999999998765245555666788999999999999997653 46
Q ss_pred HhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 189 YGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 189 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+.+|+.|+++++. ++.+...++..+++.++++++|++. .+|.++..+++.-.. . ....++++++.+...|.
T Consensus 323 ~~~L~~G~t~vl~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~-~-~~~~~l~sLr~i~~~Ge 393 (655)
T PRK03584 323 VSGLLVGATLVLY--DGSPFYPDPNVLWDLAAEEGVTVFG---TSAKYLDACEKAGLV-P-GETHDLSALRTIGSTGS 393 (655)
T ss_pred HHHHHcCCEEEEe--CCCCCCCCHHHHHHHHHHHCCEEEE---cCHHHHHHHHhcCCC-c-cccCChhheEEEEEecC
Confidence 7899999999998 5444457899999999999999976 666666665543211 1 13356666665555544
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=245.58 Aligned_cols=231 Identities=22% Similarity=0.206 Sum_probs=182.7
Q ss_pred cchhhhhccCCCCCCCCCccccCC----CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGND----PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~----~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.|+.++|.+.++++||++|+++.. .+..+++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+
T Consensus 25 ~t~~~~l~~~a~~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~ 104 (632)
T PRK07529 25 ASTYELLSRAAARHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE 104 (632)
T ss_pred CCHHHHHHHHHHHCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 378999999999999999998632 1246799999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC-----------c-----------------------------CCC----------------
Q psy9113 99 RIGAVHSIVVSKCSGDDMST-----------V-----------------------------PAN---------------- 122 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~-----------~-----------------------------~~~---------------- 122 (281)
++| +++|+++.++.+++.+ . ...
T Consensus 105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 183 (632)
T PRK07529 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRR 183 (632)
T ss_pred HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccccccccccccccc
Confidence 999 5789999887765544 0 000
Q ss_pred ------------------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCc
Q psy9113 123 ------------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTAD 177 (281)
Q Consensus 123 ------------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~p 177 (281)
.....++++ ++|||||||.||+|++||+++.. ........+++.+++++++.+|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p 262 (632)
T PRK07529 184 KAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVA-NAWLGALLLGLGPGDTVFCGLP 262 (632)
T ss_pred ccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHH-HHHHHHHhcCCCCCCEEEEecC
Confidence 001235677 99999999999999999999988 6766667778889999999999
Q ss_pred hhhhhhHhHHHHhhhccCceEEEecCCCccc--cccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccc
Q psy9113 178 VGWITGHTYVVYGPLANGATSVIVSLPGEIY--WCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTI 255 (281)
Q Consensus 178 l~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L 255 (281)
++|.+|+...++.++..|+++++. +.... ......+++.++++++|.+. .+|.++..+++... ...++
T Consensus 263 l~h~~~~~~~~~~~l~~G~~vv~~--~~~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~-----~~~~~ 332 (632)
T PRK07529 263 LFHVNALLVTGLAPLARGAHVVLA--TPQGYRGPGVIANFWKIVERYRINFLS---GVPTVYAALLQVPV-----DGHDI 332 (632)
T ss_pred chhhhHHHHHHHHHHHCCCEEEec--CccccCcchHHHHHHHHHHHhCCeEEE---eHHHHHHHHHhCcc-----cCCCc
Confidence 999999888899999999999998 31110 11235788999999999977 56666666665432 22345
Q ss_pred hhhhhccCCC
Q psy9113 256 SSLMWAGSLD 265 (281)
Q Consensus 256 ~sl~~~g~~g 265 (281)
++++.+...|
T Consensus 333 ~slr~v~~gg 342 (632)
T PRK07529 333 SSLRYALCGA 342 (632)
T ss_pred cceEEEEEcC
Confidence 5565444433
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=240.05 Aligned_cols=228 Identities=22% Similarity=0.225 Sum_probs=187.9
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.+..|+.+.|.+.++.+|+++|+++ .++.+||+||.+++.++|..|.+. |+++|++|+++++|+++++++++||+
T Consensus 7 ~~~~tl~~~l~~~a~~~~~~~a~~~----~~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~ 82 (546)
T PRK08314 7 LPETSLFHNLEVSARRYPDKTAIVF----YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAIL 82 (546)
T ss_pred CCCCCHHHHHHHHHHHcCCCcceee----cCceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence 5677899999999999999999995 457899999999999999999999 99999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC----------------------c----CC-------------------------------
Q psy9113 99 RIGAVHSIVVSKCSGDDMST----------------------V----PA------------------------------- 121 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~----------------------~----~~------------------------------- 121 (281)
++|++++|+++..+.+++.+ . ..
T Consensus 83 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (546)
T PRK08314 83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQ 162 (546)
T ss_pred HcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccc
Confidence 99999999999877665533 0 00
Q ss_pred ---------------------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchh
Q psy9113 122 ---------------------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVG 179 (281)
Q Consensus 122 ---------------------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~ 179 (281)
......++++ ++|||||||.||+|.++|+++.. .........++.++|++++.+|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~ 241 (546)
T PRK08314 163 ALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMA-NAVGSVLWSNSTPESVVLAVLPLF 241 (546)
T ss_pred cccccccccHHHHhcccCCCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHH-HHHHHHHhhCCCCCceEEEEcCch
Confidence 0001225777 99999999999999999999998 666667778889999999999999
Q ss_pred hhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhh
Q psy9113 180 WITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLM 259 (281)
Q Consensus 180 h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~ 259 (281)
|.+|+...++.++..|+++++. + .++++.+++.++++++|++. .+|.++..++..... ...++++++
T Consensus 242 ~~~g~~~~~~~~l~~G~~i~~~--~----~~~~~~~~~~i~~~~~t~~~---~~p~~~~~ll~~~~~----~~~~~~~l~ 308 (546)
T PRK08314 242 HVTGMVHSMNAPIYAGATVVLM--P----RWDREAAARLIERYRVTHWT---NIPTMVVDFLASPGL----AERDLSSLR 308 (546)
T ss_pred HHHHHHHHHHHHHHcCCeEEec--C----CCCHHHHHHHHHHhcCceec---ccHHHHHHHHhCCCc----cccCchhhh
Confidence 9999888899999999999999 5 57889999999999999976 555555566554322 223445555
Q ss_pred hccCCC
Q psy9113 260 WAGSLD 265 (281)
Q Consensus 260 ~~g~~g 265 (281)
.+...|
T Consensus 309 ~~~~gG 314 (546)
T PRK08314 309 YIGGGG 314 (546)
T ss_pred eeeecc
Confidence 544444
|
|
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=237.11 Aligned_cols=208 Identities=19% Similarity=0.181 Sum_probs=176.2
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.+.+.+++.|+.+||++|+++ +++.+||+||+++++++|+.|++ .|+.+|++|+++++|+++++++++||+++|+
T Consensus 3 ~~~~~~~~~a~~~p~~~a~~~----~~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~ 78 (496)
T PRK06839 3 GIAYWIEKRAYLHPDRIAIIT----EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVEC 78 (496)
T ss_pred cHHHHHHHHHHHCCCCeEEEE----CCceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 578899999999999999995 57899999999999999999985 6999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC--------------------------cC------C-------------Cchhhhcccc-eeeee
Q psy9113 103 VHSIVVSKCSGDDMST--------------------------VP------A-------------NSERERKLKL-RKVVT 136 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~--------------------------~~------~-------------~~~~~~~~~~-i~~TS 136 (281)
+++|+++..+.+++.. .. . ......++++ ++|||
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TS 158 (496)
T PRK06839 79 IAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISITSLKEIEDRKIDNFVEKNESASFIICYTS 158 (496)
T ss_pred EEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEecchHhhhccCCCCCCCCCCCCcEEEEeCC
Confidence 9999999887776554 00 0 0011125677 99999
Q ss_pred cCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccc
Q psy9113 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGW 216 (281)
Q Consensus 137 GTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~ 216 (281)
||||.||+|.++|+++.. ........+++.++|+++..+|++|.+|+...++.++..|+++++. + .++++.++
T Consensus 159 GTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~--~----~~~~~~~~ 231 (496)
T PRK06839 159 GTTGKPKGAVLTQENMFW-NALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVP--R----KFEPTKAL 231 (496)
T ss_pred CCCCCCcEEEEEhHHHHH-HHHHHHHHcCCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEc--c----CCCHHHHH
Confidence 999999999999999876 5555555667888999999999999999877778899999999887 4 67899999
Q ss_pred eeeeeeccceeccCCchhHHHHHHHHhhc
Q psy9113 217 ITGHTYVVYGPLANGATSVIVSETLKMLN 245 (281)
Q Consensus 217 ~~i~~~~vt~~~~~~~~~~~~~~ll~~~~ 245 (281)
+.++++++|.+. .+|.++..+++...
T Consensus 232 ~~i~~~~~t~~~---~~P~~~~~l~~~~~ 257 (496)
T PRK06839 232 SMIEKHKVTVVM---GVPTIHQALINCSK 257 (496)
T ss_pred HHHHhhCCeEEE---ehHHHHHHHHhCcc
Confidence 999999999966 55666677766543
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-30 Score=233.69 Aligned_cols=203 Identities=28% Similarity=0.308 Sum_probs=165.9
Q ss_pred hccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEee
Q psy9113 29 LTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVV 108 (281)
Q Consensus 29 l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~ 108 (281)
+++.|+++||++|+++ +.++.+||+|++++++++|..|+++|+++|++|+++++|+.+++++++||+++|++++|++
T Consensus 1 f~~~a~~~pd~~a~~~---~~~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~l~ 77 (417)
T PF00501_consen 1 FERQAQRYPDRIALID---DEGRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVPLD 77 (417)
T ss_dssp HHHHHHHSTTSEEEEE---TTTEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEEEE
T ss_pred ChhHHhhCCCceEEEE---CCCEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccccccc
Confidence 3567889999999996 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCC----------cC--------------------------------CC--c-----h---------hhhccc
Q psy9113 109 SKCSGDDMST----------VP--------------------------------AN--S-----E---------RERKLK 130 (281)
Q Consensus 109 ~~~~~~~~~~----------~~--------------------------------~~--~-----~---------~~~~~~ 130 (281)
|.++.+++.+ +. .. . . ...+++
T Consensus 78 ~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (417)
T PF00501_consen 78 PSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLSDEPQSPEDSPDDP 157 (417)
T ss_dssp TTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHCHCSHSTTHTTTSE
T ss_pred cccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccccccccccccccccCCCCccce
Confidence 9887776544 10 00 0 0 012566
Q ss_pred c-eeeeecCCCCCceEEEechhHHHHHHHhhh--hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcc
Q psy9113 131 L-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK--YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207 (281)
Q Consensus 131 ~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~--~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~ 207 (281)
+ ++|||||||.||+|.++|+++.. ...... ...+++ |++++.+|++|.+|+...++.++..|+++++. +...
T Consensus 158 ~~i~~TSGTTG~pK~v~~t~~~~~~-~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~~~~ 232 (417)
T PF00501_consen 158 AFILFTSGTTGKPKGVVLTHRNLLA-QARALALPEYFGLG--DRILSFLPLSHIFGLISALLAALFSGATLVLP--SPFD 232 (417)
T ss_dssp EEEEEESSSSSSEEEEEEEHHHHHH-HHHHHHHHHTTTTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEE--SSHH
T ss_pred eEeeccccccccccccccccccccc-cccccccccccccC--ceEEeecccccccccccccccccccccccccc--cccc
Confidence 7 99999999999999999999988 544432 223333 59999999999999877999999999999999 5322
Q ss_pred ccccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 208 YWCTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 208 ~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
. .+++.+++.++++++|.++ .+|.++..+++.
T Consensus 233 ~-~~~~~~~~~i~~~~~t~~~---~~p~~l~~l~~~ 264 (417)
T PF00501_consen 233 L-FDPESLLELISRYKPTILF---AVPSMLEALLQS 264 (417)
T ss_dssp H-HHHHHHHHHHHHHTESEEE---EEHHHHHHHHHH
T ss_pred c-cccccchhccccccccccc---cccccccccccc
Confidence 2 3468889999999999977 677777887773
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=238.14 Aligned_cols=207 Identities=16% Similarity=0.120 Sum_probs=176.3
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.++.+.|.+.++++||++|+++ .++.+||+||.++++++|++|.++|+++|++|+++++|+.++++.++||+++|+
T Consensus 43 ~~~~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G~ 118 (537)
T PRK13382 43 MGPTSGFAIAAQRCPDRPGLID----ELGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGA 118 (537)
T ss_pred CCHHHHHHHHHHhCCCCeEEEe----CCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcCc
Confidence 5799999999999999999995 456999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC--------------------------cC-------CCc-------------------hhhhccc
Q psy9113 103 VHSIVVSKCSGDDMST--------------------------VP-------ANS-------------------ERERKLK 130 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~--------------------------~~-------~~~-------------------~~~~~~~ 130 (281)
+++|+++.++.+++.+ .+ ... ....++.
T Consensus 119 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (537)
T PRK13382 119 DILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHAGQRPEPTGRKG 198 (537)
T ss_pred EEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccCcCCCCCCCCCC
Confidence 9999999988776665 00 000 0012456
Q ss_pred c-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccc
Q psy9113 131 L-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYW 209 (281)
Q Consensus 131 ~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~ 209 (281)
+ ++|||||||.||||+++|+++.. ............++++++...|++|.+|+ ..++.++..|+++++. + .
T Consensus 199 ~~il~TSGTTG~PKgv~~s~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~g~-~~~~~~l~~g~~~~~~--~----~ 270 (537)
T PRK13382 199 RVILLTSGTTGTPKGARRSGPGGIG-TLKAILDRTPWRAEEPTVIVAPMFHAWGF-SQLVLAASLACTIVTR--R----R 270 (537)
T ss_pred eEEEECCCCCCCCCEEEeccchHHH-HHHHHHHhhCCCCCCeEEEecChHhhhHH-HHHHHHHhcCcEEEEC--C----C
Confidence 6 99999999999999999988877 66666666777889999999999999998 5789999999999988 4 6
Q ss_pred ccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 210 CTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 210 ~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
++++.+++.++++++|.+. ..|.++..+++..
T Consensus 271 ~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~ 302 (537)
T PRK13382 271 FDPEATLDLIDRHRATGLA---VVPVMFDRIMDLP 302 (537)
T ss_pred cCHHHHHHHHHHhCCEEEE---ehHHHHHHHHcCC
Confidence 8899999999999999977 5666666666543
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-30 Score=237.79 Aligned_cols=211 Identities=19% Similarity=0.157 Sum_probs=174.7
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..|+.+.+.+.++++||++|+++. ++++.+||+||.++++++|+.|.+.|+++||+|+++++|+.+++++++||+++|
T Consensus 22 ~~~~~~~l~~~~~~~~~~~a~~~~--~~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~G 99 (537)
T PLN02246 22 HLPLHDYCFERLSEFSDRPCLIDG--ATGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRG 99 (537)
T ss_pred CCcHHHHHHHHHHhCCCCeEEEec--CCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHcC
Confidence 348999999999999999999863 235789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------------c-----------CC--------------------Cchhhhc
Q psy9113 102 AVHSIVVSKCSGDDMST----------------------V-----------PA--------------------NSERERK 128 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------------~-----------~~--------------------~~~~~~~ 128 (281)
++++|+++..+.+++.. . .. ......+
T Consensus 100 ~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T PLN02246 100 AVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADENELPEVEISPD 179 (537)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHHHHhcCCCCCCCCCCCCcc
Confidence 99999999887666544 0 00 0001235
Q ss_pred ccc-eeeeecCCCCCceEEEechhHHHHHHHhhh----hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 129 LKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK----YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 129 ~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
+++ ++|||||||.||+|+++|+++.. ...... ..+++.++|+++..+|++|.+++...++.++..|+++++.
T Consensus 180 ~~~~i~~TSGtTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~-- 256 (537)
T PLN02246 180 DVVALPYSSGTTGLPKGVMLTHKGLVT-SVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIM-- 256 (537)
T ss_pred CEEEEEeCCCCCCCCceEEEeHHHHHH-HHHHHhhccccccCCCCCcEEEEeechHHHHHHHHHHHHHHhcCCEEEEe--
Confidence 667 99999999999999999999987 443322 2467788999999999999999877788999999999999
Q ss_pred CCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
+ .++++.+++.++++++|++. .+|.++..+++..
T Consensus 257 ~----~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~ 290 (537)
T PLN02246 257 P----KFEIGALLELIQRHKVTIAP---FVPPIVLAIAKSP 290 (537)
T ss_pred C----CCCHHHHHHHHHHhCceEEE---cchHHHHHHhcCc
Confidence 5 57889999999999999966 4444455665544
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=240.27 Aligned_cols=231 Identities=25% Similarity=0.311 Sum_probs=174.7
Q ss_pred chhhhhccCCCCCCCCCccccCC-CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGND-PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~-~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
++.+.+.+. .++++|+++.+ .+..+.+||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 88 n~~~~~~~~---~~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Ga 164 (652)
T TIGR01217 88 NYAENLLRA---AGTEPALLYVDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGA 164 (652)
T ss_pred eHHHHHhcc---CCCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCe
Confidence 566655543 46888887643 23457899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-----------------------------------cC-----------C---------------
Q psy9113 103 VHSIVVSKCSGDDMST-----------------------------------VP-----------A--------------- 121 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-----------------------------------~~-----------~--------------- 121 (281)
+++|+++.++.+++.+ .+ .
T Consensus 165 v~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 244 (652)
T TIGR01217 165 IWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDL 244 (652)
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccH
Confidence 9999999886554443 00 0
Q ss_pred --------C-----chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHH
Q psy9113 122 --------N-----SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187 (281)
Q Consensus 122 --------~-----~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~ 187 (281)
. ...+.++++ |+|||||||.||||+++|++++..........+++.++|++++..|+.|+++. .
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~ 322 (652)
T TIGR01217 245 EDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMWN--W 322 (652)
T ss_pred HHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhhH--H
Confidence 0 001125678 99999999999999999998654245555556788999999999999998642 3
Q ss_pred HHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 188 VYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 188 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++.+|+.|+++++. ++.+...++..+++.++++++|++. .++.++.. +...+... ...++|++++.+...|.
T Consensus 323 ~~~~l~~G~t~vl~--~g~~~~~~~~~~~~~i~~~~vt~~~---~~p~~~~~-l~~~~~~~-~~~~~l~sLr~i~~gGe 394 (652)
T TIGR01217 323 LVSGLATGATLVLY--DGSPGFPATNVLWDIAERTGATLFG---TSAKYVMA-CRKAGVHP-ARTHDLSALQCVASTGS 394 (652)
T ss_pred HHHHHhcCcEEEEE--CCCCCCCCchHHHHHHHHhCCeEEe---cCHHHHHH-HHhcCCCc-cccCChhheeEEEeecC
Confidence 56899999999998 5433345788999999999999954 56665543 33332211 13456777776665554
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-30 Score=235.56 Aligned_cols=228 Identities=23% Similarity=0.217 Sum_probs=187.8
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++.+.|.+.++.+|+++|+.+ .++++||+||++++.++|..|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 4 ~~~i~~~l~~~~~~~~~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~G 79 (513)
T PRK07656 4 WMTLPELLARAARRFGDKEAYVF----GDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAG 79 (513)
T ss_pred cccHHHHHHHHHHHCCCCeEEEe----CCCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhcC
Confidence 46899999999999999999995 56799999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC--------------------------cC----------------------------------C
Q psy9113 102 AVHSIVVSKCSGDDMST--------------------------VP----------------------------------A 121 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~--------------------------~~----------------------------------~ 121 (281)
++++|+++..+.+++.. .+ .
T Consensus 80 ~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (513)
T PRK07656 80 AVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAER 159 (513)
T ss_pred eEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCCC
Confidence 99999999877665433 00 0
Q ss_pred Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEE
Q psy9113 122 NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 122 ~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
......++++ ++|||||||.||+|.++|.++.. ........++++++++++...|++|.+|+...++.++..|+++++
T Consensus 160 ~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 238 (513)
T PRK07656 160 APEVDPDDVADILFTSGTTGRPKGAMLTHRQLLS-NAADWAEYLGLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILP 238 (513)
T ss_pred cCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHH-HHHHHHHhhCCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEe
Confidence 0011235677 99999999999999999999988 666677778899999999999999999988889999999999999
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCC
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSL 264 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~ 264 (281)
. + ..+++.+++.++++++|.+. .+|.++..+++....... ...+++.+..+|+.
T Consensus 239 ~--~----~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~~~~-~~~~l~~v~~~g~~ 292 (513)
T PRK07656 239 L--P----VFDPDEVFRLIETERITVLP---GPPTMYNSLLQHPDRSAE-DLSSLRLAVTGAAS 292 (513)
T ss_pred c--C----cCCHHHHHHHHHHhCCeEEe---chHHHHHHHHcCCCcCCC-CccceeeEEecCCC
Confidence 8 4 57899999999999999976 666667777766544321 22234444444443
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=235.02 Aligned_cols=214 Identities=19% Similarity=0.211 Sum_probs=176.2
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCC-CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDP-DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~-~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
...+|+.+++++.++++||++|+++.+. ++.+.+||+||.++++++|+.|.++|+++||+|+++++|+.+++++++||+
T Consensus 4 ~~~~~l~~~~~~~a~~~p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~ 83 (517)
T PRK08008 4 VGGQHLRQMWDDLADVYGHKTALIFESSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLA 83 (517)
T ss_pred cccccHHHHHHHHHHHCCCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 3456899999999999999999987542 335789999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC----------------------c----C--------------------------------
Q psy9113 99 RIGAVHSIVVSKCSGDDMST----------------------V----P-------------------------------- 120 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~----------------------~----~-------------------------------- 120 (281)
++|++++++++..+.+++.+ + .
T Consensus 84 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (517)
T PRK08008 84 KIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPAT 163 (517)
T ss_pred HcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCcc
Confidence 99999999999877666554 0 0
Q ss_pred --CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 121 --ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 121 --~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.......++++ ++|||||||.||+|+++|+++.. ..........+.+++++++.+|++|..+....++.++..|++
T Consensus 164 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~ 242 (517)
T PRK08008 164 LCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRF-AGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGAT 242 (517)
T ss_pred ccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHH-HHHHHhhhcCCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcE
Confidence 00001225778 99999999999999999999986 433333334567889999999999988887889999999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
+++. + .++++.+++.++++++|.+. .+|.++..++..
T Consensus 243 ~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~ 279 (517)
T PRK08008 243 FVLL--E----KYSARAFWGQVCKYRATITE---CIPMMIRTLMVQ 279 (517)
T ss_pred EEEc--c----ccCHHHHHHHHHHcCCcEEe---chHHHHHHHHhC
Confidence 9999 4 67899999999999999965 444455555543
|
|
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-30 Score=237.15 Aligned_cols=209 Identities=21% Similarity=0.235 Sum_probs=178.7
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..|+.++|++.++++||++|+++ .++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|
T Consensus 20 ~~~l~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~G 95 (542)
T PRK06155 20 ERTLPAMLARQAERYPDRPLLVF----GGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLG 95 (542)
T ss_pred ccCHHHHHHHHHHHCCCCeEEEe----CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHhC
Confidence 45789999999999999999985 46799999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------------c-----CC-------------------------------Cc
Q psy9113 102 AVHSIVVSKCSGDDMST----------------------V-----PA-------------------------------NS 123 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------------~-----~~-------------------------------~~ 123 (281)
++++|+++.++.+++.. . .. ..
T Consensus 96 ~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (542)
T PRK06155 96 AIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAA 175 (542)
T ss_pred CEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhcccCCCCCCC
Confidence 99999999988766554 0 00 00
Q ss_pred hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEec
Q psy9113 124 ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202 (281)
Q Consensus 124 ~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~ 202 (281)
....++++ ++|||||||.||+|+++|+++.. ........+++.+++++++.+|++|..|+. .++.++..|+++++.
T Consensus 176 ~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~-~~~~~~~~~~~~~~~~~l~~~pl~~~~~~~-~~~~~l~~G~~~~~~- 252 (542)
T PRK06155 176 AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYW-WGRNSAEDLEIGADDVLYTTLPLFHTNALN-AFFQALLAGATYVLE- 252 (542)
T ss_pred CCCCCCeEEEEECCCCCCCCcEEEEEHHHHHH-HHHHHHHhcCCCCCCEEEEecCHHHHHHHH-HHHHHHHcCceEEee-
Confidence 11235778 99999999999999999999987 566666778889999999999999999985 679999999999998
Q ss_pred CCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhc
Q psy9113 203 LPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLN 245 (281)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~ 245 (281)
+ .++++.+++.++++++|.++ .++.++..+++...
T Consensus 253 -~----~~~~~~~~~~l~~~~~t~~~---~~p~~~~~l~~~~~ 287 (542)
T PRK06155 253 -P----RFSASGFWPAVRRHGATVTY---LLGAMVSILLSQPA 287 (542)
T ss_pred -C----CCCHHHHHHHHHHhCCcEEE---chHHHHHHHHcCcC
Confidence 4 57899999999999999977 55566666665543
|
|
| >KOG1176|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=230.63 Aligned_cols=219 Identities=22% Similarity=0.222 Sum_probs=171.3
Q ss_pred hccCCCCCCCC-CccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCC--CCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEE
Q psy9113 29 LTPLPGCTPMK-PGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKG--VQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105 (281)
Q Consensus 29 l~~~a~~~pd~-~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g--~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v 105 (281)
+.+.+..++++ +.+++... +++.+||+|+++++.++|..|.++| +++||+|+++++|++++++.++||..+|++..
T Consensus 22 l~~~~~~~~~~~~~~i~~~~-~g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~ 100 (537)
T KOG1176|consen 22 LGRPAFVYLDRNTSLVYQDS-DGRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLN 100 (537)
T ss_pred ccccccccccCcceEEEecC-CCcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcccc
Confidence 34444444555 66665321 2699999999999999999999876 78899999999999999999999999999999
Q ss_pred EeecCCCCCCcCC---------------------------------cC-----------------C-----------Cch
Q psy9113 106 IVVSKCSGDDMST---------------------------------VP-----------------A-----------NSE 124 (281)
Q Consensus 106 ~l~~~~~~~~~~~---------------------------------~~-----------------~-----------~~~ 124 (281)
+++|.+...++.+ +. . ...
T Consensus 101 ~~Np~~~~~ei~~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T KOG1176|consen 101 PLNPRLTASEIAKQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDGIRP 180 (537)
T ss_pred ccCcccCHHHHHHHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCCccccc
Confidence 9999999998888 00 0 001
Q ss_pred hhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 125 RERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 125 ~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
...++++ ++|||||||.||||++||+++.. ..............++.++.+|++|.+|+...+.+.+..|++++..
T Consensus 181 ~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~-~~~~~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~-- 257 (537)
T KOG1176|consen 181 VSEDDTAAILYSSGTTGLPKGVVLSHRNLIA-NTLSIKIGWELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICL-- 257 (537)
T ss_pred CCCCCeEEEecCCCCCCCCceEEEecHHHHH-HHHHhhhcccCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEEC--
Confidence 1126788 99999999999999999999998 6555555666777999999999999999976666677777777777
Q ss_pred CCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhcc
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAG 262 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g 262 (281)
..++++.+++.+++||+|+++ .+|+ ++..+++.... ..++|+|++...
T Consensus 258 ----~~f~~~~~~~~i~kykvt~~~--~vP~-~~~~l~~~p~~----~~~~l~sl~~v~ 305 (537)
T KOG1176|consen 258 ----RKFDAELFLDLIEKYKVTHLF--LVPP-VLNMLAKSPIV----KKYDLSSLRSVL 305 (537)
T ss_pred ----CCCCHHHHHHHHHHhCEEEEE--cChH-HHHHHhcCCcc----CcccCCccEEEE
Confidence 378999999999999999966 3444 44555555422 446677776553
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=233.36 Aligned_cols=228 Identities=15% Similarity=0.181 Sum_probs=185.4
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+++.+++.+.++++|+++|+++ .++.+||.||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~----~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~ 77 (497)
T PRK06145 2 FNLSASIAFHARRTPDRAALVY----RDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGA 77 (497)
T ss_pred ccHHHHHHHHHHHCCCceEEEE----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcCc
Confidence 5788999999999999999985 467999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------------------------cCC------------------Cchhhhcccc-eeee
Q psy9113 103 VHSIVVSKCSGDDMST----------------------------VPA------------------NSERERKLKL-RKVV 135 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------------------------~~~------------------~~~~~~~~~~-i~~T 135 (281)
+++|+++..+.+++.+ ... ......++++ ++||
T Consensus 78 ~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~T 157 (497)
T PRK06145 78 VFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYT 157 (497)
T ss_pred EEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhcccceEEecCcccchhHHHhccCCCCCCCCCCCccceEEEEeC
Confidence 9999999887776544 000 0011235677 9999
Q ss_pred ecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccccc
Q psy9113 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVG 215 (281)
Q Consensus 136 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 215 (281)
|||||.||+|.++|+++.. ........+++..+++++...|++|.+++....+.++..|+++++. + .+++..+
T Consensus 158 SGTTG~PK~v~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~--~----~~~~~~~ 230 (497)
T PRK06145 158 SGTTDRPKGVMHSYGNLHW-KSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIH--R----EFDPEAV 230 (497)
T ss_pred CCCCCCCcEEEEecHHHHH-HHHHHHHhhCCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEEC--C----cCCHHHH
Confidence 9999999999999999887 5555556678889999999999999999877778889999999998 5 6789999
Q ss_pred ceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 216 WITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 216 ~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
++.++++++|.+. .+|.++..++........ ....++.+..+|+..
T Consensus 231 ~~~i~~~~~t~~~---~~P~~~~~ll~~~~~~~~-~~~~l~~~~~gG~~~ 276 (497)
T PRK06145 231 LAAIERHRLTCAW---MAPVMLSRVLTVPDRDRF-DLDSLAWCIGGGEKT 276 (497)
T ss_pred HHHHHHhCCeEEE---ehHHHHHHHHcCCCcccc-ccccceEEEecCCCC
Confidence 9999999999977 566677777765443221 222344444445444
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-30 Score=260.94 Aligned_cols=234 Identities=16% Similarity=0.145 Sum_probs=187.5
Q ss_pred cchhhhhccCCCCCCCCCccccCCC-----CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHH
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDP-----DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~-----~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~ 97 (281)
.++.+++++.++++||++|+++... +.++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||
T Consensus 236 ~~l~~~~~~~a~~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~~~~~i~~~lA~ 315 (1389)
T TIGR03443 236 GAIHDIFADNAEKHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGV 315 (1389)
T ss_pred CcHHHHHHHHHHhCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHHHH
Confidence 5799999999999999999986321 24679999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeecCCCCCCcCC------------------------------------cC---C--C--------------
Q psy9113 98 ARIGAVHSIVVSKCSGDDMST------------------------------------VP---A--N-------------- 122 (281)
Q Consensus 98 ~~~G~~~v~l~~~~~~~~~~~------------------------------------~~---~--~-------------- 122 (281)
+++|++++|++|.++.+++.+ .+ . .
T Consensus 316 l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1389)
T TIGR03443 316 LKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLEGGETD 395 (1389)
T ss_pred HhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEeccccccccccccccccc
Confidence 999999999999877665433 00 0 0
Q ss_pred --------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHH
Q psy9113 123 --------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187 (281)
Q Consensus 123 --------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~ 187 (281)
.....++++ ++|||||||.||||+++|+++.. ........+++.++|+++...|++|..++ ..
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~~~~~d~~~-~~ 473 (1389)
T TIGR03443 396 VLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAY-YFPWMAKRFGLSENDKFTMLSGIAHDPIQ-RD 473 (1389)
T ss_pred ccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHH-HHHHHHHhcCCCCCCEEEEecCceecchH-HH
Confidence 001235678 99999999999999999999998 77777778889999999999999999886 58
Q ss_pred HHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 188 VYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 188 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
++.+|+.|+++++. +.. ...++..+++.++++++|+++ .+|.++..+...... ....|+.+.++|+.-.+
T Consensus 474 i~~~L~~G~~l~~~--~~~-~~~~~~~l~~~i~~~~vt~~~---~~Ps~~~~l~~~~~~----~~~~lr~~~~gGe~l~~ 543 (1389)
T TIGR03443 474 MFTPLFLGAQLLVP--TAD-DIGTPGRLAEWMAKYGATVTH---LTPAMGQLLSAQATT----PIPSLHHAFFVGDILTK 543 (1389)
T ss_pred HHHHHhCCCEEEEc--Chh-hccCHHHHHHHHHHhCCeEEE---eCHHHHHHHHhcccc----cCCCccEEEEecccCCH
Confidence 89999999999998 421 245688999999999999977 555555554432211 23456666666765544
Q ss_pred e
Q psy9113 268 M 268 (281)
Q Consensus 268 ~ 268 (281)
.
T Consensus 544 ~ 544 (1389)
T TIGR03443 544 R 544 (1389)
T ss_pred H
Confidence 3
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=234.27 Aligned_cols=223 Identities=24% Similarity=0.308 Sum_probs=185.0
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++.++|.+.++.+|+++|+++ ..+.+||+||.+++.++|+.|.+.|+++|++|+++++|+.+++++++||+++|
T Consensus 9 ~~~l~~~l~~~a~~~p~~~a~~~----~~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~G 84 (540)
T PRK06164 9 ADTLASLLDAHARARPDAVALID----EDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLG 84 (540)
T ss_pred CCCHHHHHHHHHHhCCCCeEEec----CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 44899999999999999999993 56899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCCc------------C---------------------------CC--------------------
Q psy9113 102 AVHSIVVSKCSGDDMSTV------------P---------------------------AN-------------------- 122 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~~------------~---------------------------~~-------------------- 122 (281)
++++|+++..+.+++.++ + ..
T Consensus 85 ~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (540)
T PRK06164 85 ATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFAL 164 (540)
T ss_pred cEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccccc
Confidence 999999998765554440 0 00
Q ss_pred -----------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHh
Q psy9113 123 -----------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYG 190 (281)
Q Consensus 123 -----------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~ 190 (281)
.....++++ ++|||||||+||+|+++|+++.. ........+++.+++++++.+|++|.+|+. .++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~ 242 (540)
T PRK06164 165 PDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLR-HARAIARAYGYDPGAVLLAALPFCGVFGFS-TLLG 242 (540)
T ss_pred cccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHH-HHHHHHHhcCCCCCCEEEEcCCchhHHHHH-HHHH
Confidence 001124566 89999999999999999999998 777777778888999999999999999984 7899
Q ss_pred hhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCC
Q psy9113 191 PLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSL 264 (281)
Q Consensus 191 ~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~ 264 (281)
++..|+++++. + .+++..+++.++++++|+++ .+|.++..+++... ...++++++.++..
T Consensus 243 ~l~~G~~~~~~--~----~~~~~~~~~~l~~~~~t~~~---~~p~~l~~l~~~~~-----~~~~~~~l~~~~~~ 302 (540)
T PRK06164 243 ALAGGAPLVCE--P----VFDAARTARALRRHRVTHTF---GNDEMLRRILDTAG-----ERADFPSARLFGFA 302 (540)
T ss_pred HHhcCceEEec--C----CCCHHHHHHHHHHhCCeeec---CCHHHHHHHHHhhc-----ccCCCcceeeeeec
Confidence 99999999998 5 67899999999999999976 55666666666521 33456666655433
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=242.63 Aligned_cols=226 Identities=19% Similarity=0.244 Sum_probs=180.8
Q ss_pred chhhhhccCCCC--CCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 24 TGGHVLTPLPGC--TPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 24 tl~~~l~~~a~~--~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
|+.+++.+.+++ +||++|+++ .+.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||+++|
T Consensus 5 ~~~~~~~~~a~~~~~pd~~a~~~-----~~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~aG 79 (705)
T PRK06060 5 NLAGLLAEQASEAGWYDRPAFYA-----ADVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARG 79 (705)
T ss_pred CHHHHHHHHHhhccCCCceEEEe-----cCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 788999988876 799999984 2379999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC-------------------cCC-----------------C---chhhhcccc-eeeeecCCCC
Q psy9113 102 AVHSIVVSKCSGDDMST-------------------VPA-----------------N---SERERKLKL-RKVVTGSTGK 141 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~-------------------~~~-----------------~---~~~~~~~~~-i~~TSGTTG~ 141 (281)
++++|++|.++.+++.+ ... + .....++++ ++|||||||.
T Consensus 80 ~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGSTG~ 159 (705)
T PRK06060 80 VMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPSRVAEAAELMSEAARVAPGGYEPMGGDALAYATYTSGTTGP 159 (705)
T ss_pred cEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcccccchhhhhhhhccccCCCCCCCCCCCCeEEEEECCCCCCC
Confidence 99999999988877666 000 0 001124677 9999999999
Q ss_pred CceEEEechhHHHHHHHhh-hhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeee
Q psy9113 142 PKGVLHTTGGYLLYAATTH-KYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGH 220 (281)
Q Consensus 142 PK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~ 220 (281)
||||+++|+++.. ..... ...+++.++++++...|++|.+++...++.+|..|+++++. +. .+++..+++.++
T Consensus 160 PKgV~~sh~~~~~-~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~--~~---~~~~~~~~~~i~ 233 (705)
T PRK06060 160 PKAAIHRHADPLT-FVDAMCRKALRLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVIN--SA---PVTPEAAAILSA 233 (705)
T ss_pred CcEEEEccccHHH-HHHHHHHHhhCCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEe--CC---CCCHHHHHHHHH
Confidence 9999999999987 44433 34567888999999999999988877789999999999998 42 467888889999
Q ss_pred eeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 221 TYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 221 ~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++++|+++ .+|.++..+++..... ...+|+.+..+|+.-.
T Consensus 234 ~~~~t~~~---~~P~~l~~l~~~~~~~---~~~slr~i~~gGe~l~ 273 (705)
T PRK06060 234 RFGPSVLY---GVPNFFARVIDSCSPD---SFRSLRCVVSAGEALE 273 (705)
T ss_pred hcCCeEEe---eHHHHHHHHHHhcccc---cccceeEEEEecCcCC
Confidence 99999976 5666666666544321 2234555555555443
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=257.70 Aligned_cols=235 Identities=18% Similarity=0.194 Sum_probs=192.7
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
...++.++|.+.++.+||++|+++ .++.+||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++
T Consensus 456 ~~~~l~~~~~~~~~~~p~~~Al~~----~~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~~~~~~i~~~la~~~~ 531 (1296)
T PRK10252 456 PETTLSALVAQQAAKTPDAPALAD----ARYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEA 531 (1296)
T ss_pred CcCCHHHHHHHHHHhCCCCeEEEc----CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 345899999999999999999995 4678999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC-------------------cC---------CC-----------chhhhcccc-eeeeecCCC
Q psy9113 101 GAVHSIVVSKCSGDDMST-------------------VP---------AN-----------SERERKLKL-RKVVTGSTG 140 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~-------------------~~---------~~-----------~~~~~~~~~-i~~TSGTTG 140 (281)
|++++|+++..+.+++.+ .. .. .....++++ ++|||||||
T Consensus 532 G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG 611 (1296)
T PRK10252 532 GAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYNAPLAPQGAAPLQLSQPHHTAYIIFTSGSTG 611 (1296)
T ss_pred CCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCceeeecccccccccCCCCCCCCCCCeEEEEECCCCCC
Confidence 999999999988776555 00 00 001235778 999999999
Q ss_pred CCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeee
Q psy9113 141 KPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGH 220 (281)
Q Consensus 141 ~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~ 220 (281)
+||||+++|+++.+ ........+++.++|+++...|++|..++ ..++.+|..|+++++. +.. ...++..+++.++
T Consensus 612 ~PKgV~~~h~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~--~~~-~~~~~~~~~~~i~ 686 (1296)
T PRK10252 612 RPKGVMVGQTAIVN-RLLWMQNHYPLTADDVVLQKTPCSFDVSV-WEFFWPFIAGAKLVMA--EPE-AHRDPLAMQQFFA 686 (1296)
T ss_pred CCCEEEeccHHHHH-HHHHHHHhcCCCCCCEEEEeCCcchhhhH-HHHHHHHhCCCEEEEC--Chh-ccCCHHHHHHHHH
Confidence 99999999999998 77778888999999999999999999886 5889999999999998 321 2578999999999
Q ss_pred eeccceeccCCchhHHHHHHHHhhccccc-cccccchhhhhccCCCcc
Q psy9113 221 TYVVYGPLANGATSVIVSETLKMLNTNFF-CILYTISSLMWAGSLDIR 267 (281)
Q Consensus 221 ~~~vt~~~~~~~~~~~~~~ll~~~~~~~~-~~~~~L~sl~~~g~~g~~ 267 (281)
++++|++. .+|.++..+++....... ....+|+.+.++|+.-..
T Consensus 687 ~~~vt~~~---~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~ 731 (1296)
T PRK10252 687 EYGVTTTH---FVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPA 731 (1296)
T ss_pred HcCCeEEE---eCHHHHHHHHhhhccccccccCCCccEEEEecCCCCH
Confidence 99999977 556666776665433221 122355666666665443
|
|
| >KOG1256|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-29 Score=227.03 Aligned_cols=217 Identities=15% Similarity=0.062 Sum_probs=179.5
Q ss_pred ccccccchhhhhccCCCCCCCCCccccCC----CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHH
Q psy9113 18 TFWQTETGGHVLTPLPGCTPMKPGAAGND----PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT 93 (281)
Q Consensus 18 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~----~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~ 93 (281)
.+-...|+++.+.+.+..+|+.+++-... .+..+.+||+|+++++..++..|+++|+++++.|+|+..|++||++.
T Consensus 70 ~~~~~~T~~~~f~~~~~~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pEWiis 149 (691)
T KOG1256|consen 70 PFDGPLTLYEGFRRSVEKSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPEWIIS 149 (691)
T ss_pred CCCCcccHHHHhhcchhccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChhhHHh
Confidence 34556699999999999999999985432 46779999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCeEEEeecCCCCCCcCC-------------------------------------------------------
Q psy9113 94 MLACARIGAVHSIVVSKCSGDDMST------------------------------------------------------- 118 (281)
Q Consensus 94 ~lA~~~~G~~~v~l~~~~~~~~~~~------------------------------------------------------- 118 (281)
..||...|.+.||+..+++++++.+
T Consensus 150 ~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv 229 (691)
T KOG1256|consen 150 EMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGV 229 (691)
T ss_pred HHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCe
Confidence 9999999999999999999999888
Q ss_pred ----------------cCCCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHh----hhh--hccCCCCCEEEEe
Q psy9113 119 ----------------VPANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT----HKY--VFDYKPGDIYWCT 175 (281)
Q Consensus 119 ----------------~~~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~----~~~--~~~~~~~~~~l~~ 175 (281)
...+....+++.+ |.|||||||.|||||+||+|++. .... ... .....++|+++++
T Consensus 230 ~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~-~v~~~~~~~~~~~~~~~~~~dv~lSy 308 (691)
T KOG1256|consen 230 EVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVS-DVAGIFFLSAAENAKATVGDDVYLSY 308 (691)
T ss_pred EEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceee-hhhhhhhhhhcccccccccCceEEEe
Confidence 1111234457888 99999999999999999999998 4332 111 1122347999999
Q ss_pred CchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcc
Q psy9113 176 ADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNT 246 (281)
Q Consensus 176 ~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~ 246 (281)
+|+.|++..+.. ...++.|+.+.+. ..|+..+.+.+++.+||.+. +.|-++.++.+.+..
T Consensus 309 LPLAHi~er~~~-~~~~~~G~~IgF~-------~gD~~~l~~dlk~lkPT~f~---~VPRVl~riye~I~~ 368 (691)
T KOG1256|consen 309 LPLAHIFERVVE-LYTFYIGAKIGFA-------RGDILKLTDDLKELKPTVFP---GVPRVLERIYEGIQK 368 (691)
T ss_pred CcHHHHHHHHHH-HhHhhcccEEEEe-------cCChHHHHHHHHHhCCcEEe---ccHhHHHHHHHHHHH
Confidence 999999998755 5556899999999 57889999999999999966 555556666666543
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=230.76 Aligned_cols=205 Identities=21% Similarity=0.174 Sum_probs=174.3
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
|++.+.|.+.++.+||++|+++ .++.+||+||.+++.++|+.|.+.|. +|++|+++++|+++++++++||+++|+
T Consensus 1 ~~~~~~~~~~a~~~p~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G~ 75 (487)
T PRK07638 1 MGITKEYKKHASLQPNKIAIKE----NDRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAGW 75 (487)
T ss_pred CChHHHHHHHHHhCCCCeEEec----CCcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcCe
Confidence 4688899999999999999985 46799999999999999999999884 799999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-------------------cC--------C---------------Cchhhhcccc-eeeeecCC
Q psy9113 103 VHSIVVSKCSGDDMST-------------------VP--------A---------------NSERERKLKL-RKVVTGST 139 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-------------------~~--------~---------------~~~~~~~~~~-i~~TSGTT 139 (281)
+++|+++..+.+++.+ +. . ......++++ ++||||||
T Consensus 76 ~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtT 155 (487)
T PRK07638 76 TCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEIDEWKRMIEKYLPTYAPIENVQNAPFYMGFTSGST 155 (487)
T ss_pred EEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEehhhhhhhhhccccccccccCCCCcEEEEeCCCCC
Confidence 9999999988776655 00 0 0001124567 99999999
Q ss_pred CCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceee
Q psy9113 140 GKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITG 219 (281)
Q Consensus 140 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i 219 (281)
|.||+|+++|+++.. ........+++.++|+++...|++|..++ ..++.++..|+++++. + .+++..+++.+
T Consensus 156 G~PKgv~~s~~~~~~-~~~~~~~~~~~~~~d~~~~~~~l~~~~~l-~~~~~~l~~g~~~~~~--~----~~~~~~~~~~i 227 (487)
T PRK07638 156 GKPKAFLRAQQSWLH-SFDCNVHDFHMKREDSVLIAGTLVHSLFL-YGAISTLYVGQTVHLM--R----KFIPNQVLDKL 227 (487)
T ss_pred CCCcEEEEecHHHHH-HHHHHHHhcCcCCCCEEEEeecchHHHHH-HHHHHHHccCcEEEEc--C----CCCHHHHHHHH
Confidence 999999999999988 66677777888999999999999998876 5789999999999998 5 67899999999
Q ss_pred eeeccceeccCCchhHHHHHHHHh
Q psy9113 220 HTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 220 ~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
+++++|++. .+|.++..+.+.
T Consensus 228 ~~~~~t~~~---~~P~~~~~l~~~ 248 (487)
T PRK07638 228 ETENISVMY---TVPTMLESLYKE 248 (487)
T ss_pred HHcCCeEEE---eCcHHHHHHHhC
Confidence 999999976 555555665554
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=235.81 Aligned_cols=228 Identities=19% Similarity=0.118 Sum_probs=182.7
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
..+|+.+.+++.++.+||++|+.+ .++.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 30 ~~~~l~~~~~~~~~~~p~~~a~~~----~~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 105 (573)
T PRK05605 30 GDTTLVDLYDNAVARFGDRPALDF----FGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRL 105 (573)
T ss_pred CcCCHHHHHHHHHHHCCCCeEEEe----CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 346899999999999999999986 3568999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC----------c----------------CC---------------------------------
Q psy9113 101 GAVHSIVVSKCSGDDMST----------V----------------PA--------------------------------- 121 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~----------~----------------~~--------------------------------- 121 (281)
|++++|+++.++.+++.+ + ..
T Consensus 106 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (573)
T PRK05605 106 GAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARAA 185 (573)
T ss_pred CcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeecccccccccccccccccccccccccc
Confidence 999999999887776555 0 00
Q ss_pred ---------------------------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhc-cC-CCCCE
Q psy9113 122 ---------------------------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVF-DY-KPGDI 171 (281)
Q Consensus 122 ---------------------------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~-~~-~~~~~ 171 (281)
......++++ ++|||||||.||+|.++|+++.. ......... ++ ..+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~ 264 (573)
T PRK05605 186 LTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFA-NAAQGKAWVPGLGDGPER 264 (573)
T ss_pred cccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHH-HHHHHHhhccccCCCCcE
Confidence 0001124677 99999999999999999999887 444333222 22 34789
Q ss_pred EEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccc
Q psy9113 172 YWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCI 251 (281)
Q Consensus 172 ~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~ 251 (281)
++...|++|.+|+...++.++..|+++++. + ..+++.+++.++++++|.+. .+|.++..+++.... .
T Consensus 265 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~--~----~~~~~~~~~~l~~~~~t~~~---~~P~~~~~l~~~~~~----~ 331 (573)
T PRK05605 265 VLAALPMFHAYGLTLCLTLAVSIGGELVLL--P----APDIDLILDAMKKHPPTWLP---GVPPLYEKIAEAAEE----R 331 (573)
T ss_pred EEEecChHHHHHHHHHHHHHHHcCCEEEEe--C----CCCHHHHHHHHHHhCCEEEE---chHHHHHHHHhCccc----c
Confidence 999999999999877888899999999998 4 56899999999999999977 666677777765443 2
Q ss_pred cccchhhhhccCCCc
Q psy9113 252 LYTISSLMWAGSLDI 266 (281)
Q Consensus 252 ~~~L~sl~~~g~~g~ 266 (281)
..++++++.+...|.
T Consensus 332 ~~~~~~lr~i~~gg~ 346 (573)
T PRK05605 332 GVDLSGVRNAFSGAM 346 (573)
T ss_pred CCCchhccEEEECCC
Confidence 234555655544443
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=232.95 Aligned_cols=211 Identities=22% Similarity=0.164 Sum_probs=179.4
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..|+.++|.+.++++||++|+++ .++.+||+||.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|
T Consensus 10 ~~~l~~~l~~~a~~~~~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~~G 85 (523)
T PRK08316 10 RQTIGDILRRSARRYPDKTALVF----GDRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAG 85 (523)
T ss_pred CCCHHHHHHHHHHHCCCCeEEEE----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 45799999999999999999985 45899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC-------------------cC----------------------------------------CC
Q psy9113 102 AVHSIVVSKCSGDDMST-------------------VP----------------------------------------AN 122 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~-------------------~~----------------------------------------~~ 122 (281)
++++|+++..+.+++.. .. ..
T Consensus 86 ~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (523)
T PRK08316 86 AVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSVAEPD 165 (523)
T ss_pred cEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCCccCc
Confidence 99999999887766644 00 00
Q ss_pred chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEe
Q psy9113 123 SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201 (281)
Q Consensus 123 ~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~ 201 (281)
.....++++ ++|||||||.||+|.++|+++.. .........+++++++++..+|++|..|+...++.++..|+++++.
T Consensus 166 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~~~~~ 244 (523)
T PRK08316 166 VELADDDLAQILYTSGTESLPKGAMLTHRALIA-EYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVIL 244 (523)
T ss_pred cCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHH-HHHHHHHHhCCCCCceEEEccCCchhhhHHHHHHHHHhcCceEEEe
Confidence 011224667 99999999999999999999988 5555566678899999999999999999876677789999999999
Q ss_pred cCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcc
Q psy9113 202 SLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNT 246 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~ 246 (281)
+ ..+++.+++.++++++|.++ .+|.++..+++....
T Consensus 245 --~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~ 280 (523)
T PRK08316 245 --D----APDPELILRTIEAERITSFF---APPTVWISLLRHPDF 280 (523)
T ss_pred --c----CCCHHHHHHHHHHhCCeEEE---eCHHHHHHHHcCccc
Confidence 5 56899999999999999977 566666676665543
|
|
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-29 Score=236.19 Aligned_cols=214 Identities=18% Similarity=0.125 Sum_probs=166.0
Q ss_pred cchhhhhccCCCCCCCCCccccC-----------C--------CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGN-----------D--------PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIY 83 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~-----------~--------~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~ 83 (281)
.|+.+++++.++.+||++|+... + .+..+.+||+|+.++++++|+.|.++|+++||+|+++
T Consensus 58 ~t~~~l~~~~~~~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai~ 137 (696)
T PLN02387 58 TTLAALFEQSCKKYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAIF 137 (696)
T ss_pred CCHHHHHHHHHHHCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 48999999999999999999321 0 1223569999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC--------------------------cC---------C-C-----
Q psy9113 84 LPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST--------------------------VP---------A-N----- 122 (281)
Q Consensus 84 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~--------------------------~~---------~-~----- 122 (281)
++|+++|+++++||+++|+++||+++.++.+++.+ .+ . .
T Consensus 138 ~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~ 217 (696)
T PLN02387 138 ADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDS 217 (696)
T ss_pred cCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCCchhhh
Confidence 99999999999999999999999999999887766 00 0 0
Q ss_pred ---------------------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhh-ccCCCCCEEE
Q psy9113 123 ---------------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV-FDYKPGDIYW 173 (281)
Q Consensus 123 ---------------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~l 173 (281)
.....++++ |+|||||||.||||++||+++.. ........ .++.++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~-~~~~~~~~~~~~~~~d~~l 296 (696)
T PLN02387 218 SLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVA-TVAGVMTVVPKLGKNDVYL 296 (696)
T ss_pred hhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHH-HHHHHHhhcCCCCCCCEEE
Confidence 001236778 99999999999999999999988 55544433 3578899999
Q ss_pred EeCchhhhhhHhHHHHhhhccCceEEEecCCCccc--c--ccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 174 CTADVGWITGHTYVVYGPLANGATSVIVSLPGEIY--W--CTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 174 ~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~--~--~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
+.+|++|++++.. .+.++..|+++.+. ..... . .-+..+++.++++++|.++ .+|.++..+.+.
T Consensus 297 ~~lPl~Hi~~~~~-~~~~~~~g~~i~~g--~~~~l~~~~~~~~~~~~~~i~~~~pT~~~---~vP~~l~~l~~~ 364 (696)
T PLN02387 297 AYLPLAHILELAA-ESVMAAVGAAIGYG--SPLTLTDTSNKIKKGTKGDASALKPTLMT---AVPAILDRVRDG 364 (696)
T ss_pred EECcHHHHHHHHH-HHHHHHhCCEEEEC--ChhhhcccccccccCchhhHHHhCCcEEE---ehhHHHHHHHHH
Confidence 9999999999854 35556677776654 21000 0 1134567789999999976 555666666543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=275.62 Aligned_cols=231 Identities=15% Similarity=0.123 Sum_probs=194.9
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++.+++++.++++||++|+++ .++.+||+||.++++++|+.|.++|+++|++|+++++|+++++++++||+++|
T Consensus 3094 ~~~~~~l~~~~a~~~p~~~Av~~----~~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~vv~~lavl~aG 3169 (3956)
T PRK12467 3094 ERLVHQLIEAQVARTPEAPALVF----GDQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAG 3169 (3956)
T ss_pred cccHHHHHHHHHHhCCCcceEee----CCcccCHHHHHHHHHHHHHHHHHcCCCCCCeEEEEeCCCHHHHHHHHHHHhhC
Confidence 35899999999999999999995 56789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC-------------------cC----------------------CCchhhhcccc-eeeeecCC
Q psy9113 102 AVHSIVVSKCSGDDMST-------------------VP----------------------ANSERERKLKL-RKVVTGST 139 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~-------------------~~----------------------~~~~~~~~~~~-i~~TSGTT 139 (281)
++++|++|.++.+++.+ .+ ......+++++ ++||||||
T Consensus 3170 a~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGST 3249 (3956)
T PRK12467 3170 GAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNGYSENNPSTRVMGENLAYVIYTSGST 3249 (3956)
T ss_pred cEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhcccCCCCCcccCCCCceEEEEEccCCC
Confidence 99999999999887766 00 00012236778 99999999
Q ss_pred CCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceee
Q psy9113 140 GKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITG 219 (281)
Q Consensus 140 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i 219 (281)
|+||||+++|+++.+ ........+++.++|+++...|++|..+. ..++.+|..|+++++. ++ ..++++.+++.+
T Consensus 3250 G~PKgV~~~h~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~l~i~--~~--~~~~~~~l~~~i 3323 (3956)
T PRK12467 3250 GKPKGVGVRHGALAN-HLCWIAEAYELDANDRVLLFMSFSFDGAQ-ERFLWTLICGGCLVVR--DN--DLWDPEELWQAI 3323 (3956)
T ss_pred CCcceeeehhHHHHH-HHHHHHHhcCCCcCCEEEEecCccHhHHH-HHHHHHHhCCCEEEEC--Cc--ccCCHHHHHHHH
Confidence 999999999999999 78888888899999999999999999886 6889999999999998 41 257899999999
Q ss_pred eeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcce
Q psy9113 220 HTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRM 268 (281)
Q Consensus 220 ~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~ 268 (281)
+++++|++. .+|.++..+++..... ...+|+.+..+|+.-...
T Consensus 3324 ~~~~vt~~~---~~Ps~l~~l~~~~~~~---~~~~lr~~~~gGe~~~~~ 3366 (3956)
T PRK12467 3324 HAHRISIAC---FPPAYLQQFAEDAGGA---DCASLDIYVFGGEAVPPA 3366 (3956)
T ss_pred HHcCCEEEE---cCHHHHHHHHhccccc---CCCCceEEEEecCCCCHH
Confidence 999999977 6666666666543221 334567777777765443
|
|
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=233.39 Aligned_cols=230 Identities=12% Similarity=0.033 Sum_probs=172.5
Q ss_pred hhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeE
Q psy9113 25 GGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104 (281)
Q Consensus 25 l~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~ 104 (281)
+.+.|++.++.+|+++|+++.+....+++||+||.++++++|+.|.++ ++|++|+++++|+++++++++||+++|+++
T Consensus 4 ~~~~l~~~~~~~~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~~~G~~~ 81 (525)
T PRK05851 4 LAAALSDAMTASGRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAWLAGAAV 81 (525)
T ss_pred HHHHHHHHhcCCCCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHHHcCCCC
Confidence 788899999999999999986555568999999999999999999987 799999999999999999999999999986
Q ss_pred EEeecCCCCC-------C----cCC----------------------c---CC--------C---chhhhcccc-eeeee
Q psy9113 105 SIVVSKCSGD-------D----MST----------------------V---PA--------N---SERERKLKL-RKVVT 136 (281)
Q Consensus 105 v~l~~~~~~~-------~----~~~----------------------~---~~--------~---~~~~~~~~~-i~~TS 136 (281)
++.+...... + +.. + .. . .....++++ ++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TS 161 (525)
T PRK05851 82 SILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSVTVHDLATAAHTNRSASLTPPDSGGPAVLQGTA 161 (525)
T ss_pred cCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcccccccccccccccccccCCCCCCCCeEEEEeCC
Confidence 5432111100 0 000 0 00 0 011235778 99999
Q ss_pred cCCCCCceEEEechhHHHHHHHhhhhhccCC-CCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccccc
Q psy9113 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYK-PGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVG 215 (281)
Q Consensus 137 GTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 215 (281)
||||.||||+++|+++.. ........+++. ++|+++..+|++|.+|+. .++.++..|+++++. +...+..++..+
T Consensus 162 GTTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~-~~~~~l~~G~~~~~~--~~~~~~~~~~~~ 237 (525)
T PRK05851 162 GSTGTPRTAILSPGAVLS-NLRGLNARVGLDAATDVGCSWLPLYHDMGLA-FLLTAALAGAPLWLA--PTTAFSASPFRW 237 (525)
T ss_pred CCCCCCcEEEecHHHHHH-HHHHHHHHhCCCCCCCeEEEcCCCccCccHH-HHHHHHHcCCeEEEc--CHHHHHHCHHHH
Confidence 999999999999999998 777777778887 899999999999999985 678999999999998 421223367889
Q ss_pred ceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 216 WITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 216 ~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++.++++++|.+. +|+.++.. +.+..... ...++++++.+...|.
T Consensus 238 ~~~i~~~~~t~~~---~p~~~~~~-l~~~~~~~--~~~~l~~lr~~~~gG~ 282 (525)
T PRK05851 238 LSWLSDSRATLTA---APNFAYNL-IGKYARRV--SDVDLGALRVALNGGE 282 (525)
T ss_pred HHHHHHhCCeEEe---CCcHHHHH-HHHhhccc--cCCCHHHhheeEeccc
Confidence 9999999999864 56555433 32221111 2234556655544444
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=233.25 Aligned_cols=215 Identities=21% Similarity=0.187 Sum_probs=179.5
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
-.+.|+.++|.+.++++||++|+++. +.++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||++
T Consensus 13 ~~~~~l~~~l~~~~~~~~~~~ai~~~--~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~ 90 (559)
T PRK08315 13 LLEQTIGQLLDRTAARYPDREALVYR--DQGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAK 90 (559)
T ss_pred hhhccHHHHHHHHHHHCCCCeEEEEc--CCCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 34458999999999999999999864 3567899999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC----------------c----------------------------C---------C-----
Q psy9113 100 IGAVHSIVVSKCSGDDMST----------------V----------------------------P---------A----- 121 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~----------------~----------------------------~---------~----- 121 (281)
+|++++|+++..+.+++.. . + .
T Consensus 91 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (559)
T PRK08315 91 IGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPG 170 (559)
T ss_pred hCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCcc
Confidence 9999999999876544422 0 0 0
Q ss_pred ----------------------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCch
Q psy9113 122 ----------------------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADV 178 (281)
Q Consensus 122 ----------------------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl 178 (281)
......++++ ++|||||||.||+|.++|+++.. ........+++.++|+++...|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~~~~~p~ 249 (559)
T PRK08315 171 MLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILN-NGYFIGEAMKLTEEDRLCIPVPL 249 (559)
T ss_pred cccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHH-HHHHHHHhcCCCCCceEEEecCc
Confidence 0011235667 99999999999999999999987 77777777889999999999999
Q ss_pred hhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhc
Q psy9113 179 GWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLN 245 (281)
Q Consensus 179 ~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~ 245 (281)
+|..|+...++.++..|+++++. . ..+++..+++.++++++|.++ .+|.++..++....
T Consensus 250 ~~~~g~~~~~~~~l~~g~~~~~~--~---~~~~~~~~~~~l~~~~~t~~~---~~P~~~~~~~~~~~ 308 (559)
T PRK08315 250 YHCFGMVLGNLACVTHGATMVYP--G---EGFDPLATLAAVEEERCTALY---GVPTMFIAELDHPD 308 (559)
T ss_pred HHHHHHHHHHHHHHhccceEEEe--c---CCCCHHHHHHHHHHcCCeEEe---cchHHHHHHHhCcc
Confidence 99999988899999999999966 3 257899999999999999966 55555555555443
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=233.30 Aligned_cols=214 Identities=18% Similarity=0.209 Sum_probs=176.0
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTM 94 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~ 94 (281)
-.++.|.+.++.+++++.++ ||++|+++ .++.+||+||.+++.++|+.|.+.|+++|++|+++++|++++++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~a~--p~~~a~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~ 90 (536)
T PRK10946 17 REKGYWQDLPLTDILTRHAA--SDAIAVIC----GERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITF 90 (536)
T ss_pred eecceecCccHHHHHHHhhC--CCCeEEEe----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHH
Confidence 45789999999999999887 99999995 5688999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeecCCCCCCcCC---------------------------------------cC---------------
Q psy9113 95 LACARIGAVHSIVVSKCSGDDMST---------------------------------------VP--------------- 120 (281)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~~~~~~---------------------------------------~~--------------- 120 (281)
+||+++|++++++.+.....++.. ..
T Consensus 91 la~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (536)
T PRK10946 91 FALLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINHP 170 (536)
T ss_pred HHHHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhhCc
Confidence 999999998776555433322210 00
Q ss_pred ---C-Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhH-HHHhhhcc
Q psy9113 121 ---A-NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY-VVYGPLAN 194 (281)
Q Consensus 121 ---~-~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~-~~~~~l~~ 194 (281)
. ......++++ ++|||||||.||+|+++|+++.. ........+++.+++++++.+|++|.+++.. .++.++..
T Consensus 171 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~-~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~ 249 (536)
T PRK10946 171 AEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYY-SVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLA 249 (536)
T ss_pred ccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHH-HHHHHHHhcCCCCCceEEEecCccccccchhhhHHHHhhc
Confidence 0 0111235677 99999999999999999999998 7777777788999999999999999888653 57888999
Q ss_pred CceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 195 GATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 195 G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
|+++++. + .+++..+++.++++++|++. .+|.++..+++..
T Consensus 250 g~~~~~~--~----~~~~~~~~~~l~~~~~t~~~---~~p~~~~~l~~~~ 290 (536)
T PRK10946 250 GGTVVLA--P----DPSATLCFPLIEKHQVNVTA---LVPPAVSLWLQAI 290 (536)
T ss_pred CcEEEEC--C----CCCHHHHHHHHHHhCCcEEE---eChHHHHHHHhhh
Confidence 9999988 4 56888899999999999976 4455555666553
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=235.14 Aligned_cols=210 Identities=16% Similarity=0.112 Sum_probs=169.7
Q ss_pred cccchhhhhccCCCCCCCCCccccCC---C--CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHH
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGND---P--DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~---~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~l 95 (281)
...|+.+++.+.++++|+++|+.+.. . +..+.+||+|+.++++++|..|.+.|+++||+|+++++|+++|+++++
T Consensus 40 ~~~t~~~~~~~~~~~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~l 119 (660)
T PLN02430 40 DITTAWDIFSKSVEKYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAME 119 (660)
T ss_pred CCCCHHHHHHHHHHhCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 34599999999999999999986421 1 123568999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeecCCCCCCcCC--------------------c----C-C------------C----------------
Q psy9113 96 ACARIGAVHSIVVSKCSGDDMST--------------------V----P-A------------N---------------- 122 (281)
Q Consensus 96 A~~~~G~~~v~l~~~~~~~~~~~--------------------~----~-~------------~---------------- 122 (281)
||+++|+++||+++.++.+++.+ + + . .
T Consensus 120 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~ 199 (660)
T PLN02430 120 ACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYS 199 (660)
T ss_pred HHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEE
Confidence 99999999999999998887776 0 0 0 0
Q ss_pred ---------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhh-----ccCCCCCEEEEeCchhhh
Q psy9113 123 ---------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV-----FDYKPGDIYWCTADVGWI 181 (281)
Q Consensus 123 ---------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-----~~~~~~~~~l~~~pl~h~ 181 (281)
....+++++ ++|||||||.||||++||+++.. ........ .++.++|++++.+|++|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~-~~~~~~~~~~~~~~~~~~~d~~ls~lPl~H~ 278 (660)
T PLN02430 200 WIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVAT-FVRGVDLFMEQFEDKMTHDDVYLSFLPLAHI 278 (660)
T ss_pred HHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHH-HHHHHHhhccccccCCCCCCEEEEeCcHHHH
Confidence 000135677 99999999999999999999987 54433221 246788999999999999
Q ss_pred hhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 182 TGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 182 ~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
++... .+.++..|+++++. ..++..+++.++++++|++. .+|.++..+.+
T Consensus 279 ~~~~~-~~~~l~~G~~i~~~-------~~~~~~l~~~l~~~~pt~~~---~vP~~~~~l~~ 328 (660)
T PLN02430 279 LDRMI-EEYFFRKGASVGYY-------HGDLNALRDDLMELKPTLLA---GVPRVFERIHE 328 (660)
T ss_pred HHHHH-HHHHHHcCCEEEEe-------CCChhhHHHHHHHhCCcEEE---ecHHHHHHHHH
Confidence 99865 45678999999887 34778899999999999966 44455555554
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=233.38 Aligned_cols=212 Identities=20% Similarity=0.176 Sum_probs=176.1
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..|+.++|.+.++++|+++|+++. +.++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|
T Consensus 17 ~~~l~~~l~~~~~~~p~~~a~~~~--~~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~G 94 (558)
T PRK12583 17 TQTIGDAFDATVARFPDREALVVR--HQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIG 94 (558)
T ss_pred cCcHHHHHHHHHHHCCCCeEEEec--CCCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhhC
Confidence 357999999999999999999863 345789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC------------cC-------------------------------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST------------VP------------------------------------------------- 120 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~------------~~------------------------------------------------- 120 (281)
++++++++..+.+++.+ .+
T Consensus 95 ~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (558)
T PRK12583 95 AILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPGFL 174 (558)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCcccc
Confidence 99999999877654333 00
Q ss_pred -CC------------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhh
Q psy9113 121 -AN------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGW 180 (281)
Q Consensus 121 -~~------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h 180 (281)
+. .....++++ ++|||||||.||+|.++|+++.. ........+++.++|+++..+|++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~ 253 (558)
T PRK12583 175 AWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILN-NGYFVAESLGLTEHDRLCVPVPLYH 253 (558)
T ss_pred chHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHH-HHHHHHHHhCCCCCCeEEEecCchh
Confidence 00 001124567 99999999999999999999987 6766667788889999999999999
Q ss_pred hhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 181 ITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 181 ~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
.+|....++.++..|+++++. . ...++..+++.++++++|+++ ..|.++..++...
T Consensus 254 ~~g~~~~~~~~l~~g~~v~~~--~---~~~~~~~~~~~i~~~~~t~l~---~~P~~~~~l~~~~ 309 (558)
T PRK12583 254 CFGMVLANLGCMTVGACLVYP--N---EAFDPLATLQAVEEERCTALY---GVPTMFIAELDHP 309 (558)
T ss_pred hhhHHHHHHHHHhcCceEEee--c---CCCCHHHHHHHHHHcCCeEEe---ccHHHHHHHHccc
Confidence 999988999999999999876 3 256889999999999999965 4444444445433
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-29 Score=241.80 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=171.2
Q ss_pred ccchhhhhccCCCCCCC-CCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 22 TETGGHVLTPLPGCTPM-KPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd-~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
..|+.+.+.+.++++|+ ++|+.+ .+++.+||+|+.++++++|+.|.+. +++||+|+++++|+++++++++||+++
T Consensus 203 ~~t~~~~l~~~~~~~p~~~~a~~~---~~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~~ 278 (718)
T PRK08043 203 RETLYEALLSAQYRYGAGKPCIED---VNFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASLR 278 (718)
T ss_pred CCCHHHHHHHHHHHhCCCCcceEc---CCCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHHc
Confidence 45889999999999998 577763 2347899999999999999999887 589999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC----------------cC------CC------------c-----------------------
Q psy9113 101 GAVHSIVVSKCSGDDMST----------------VP------AN------------S----------------------- 123 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~----------------~~------~~------------~----------------------- 123 (281)
|++++|+++.++.+++.+ .. .. .
T Consensus 279 G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (718)
T PRK08043 279 RRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMPRLA 358 (718)
T ss_pred CCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHHHHHHHHhCCccc
Confidence 999999999998777766 00 00 0
Q ss_pred --hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEE
Q psy9113 124 --ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 124 --~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
....++++ ++|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+|+...++.++..|+++++
T Consensus 359 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~vv~ 437 (718)
T PRK08043 359 QVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLA-NVEQIKTIADFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFL 437 (718)
T ss_pred cCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHH-HHHHHHHhhCCCccCeEEEcCcchhhhhhHHHHHHHHHcCCEEEE
Confidence 01125677 99999999999999999999988 666666677889999999999999999987788999999999999
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCchhHHHHHHH
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETL 241 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll 241 (281)
. +. .+++..+++.++++++|.++ ..|.++..+.
T Consensus 438 ~--~~---~~~~~~~~~~i~~~~vt~~~---~~p~~~~~l~ 470 (718)
T PRK08043 438 Y--PS---PLHYRIVPELVYDRNCTVLF---GTSTFLGNYA 470 (718)
T ss_pred e--CC---cccHHHHHHHHHhcCCeEEE---chHHHHHHhh
Confidence 8 42 34667788999999999966 3444444443
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-29 Score=230.63 Aligned_cols=231 Identities=23% Similarity=0.219 Sum_probs=187.5
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
|.+.|+.++|.+.++.+|+++|+.+ .++.+||+||++++.++|+.|.+.|+++|++|+++++|+.+++++++||++
T Consensus 3 ~~~~~l~~~l~~~~~~~p~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~ 78 (521)
T PRK06187 3 DYPLTIGRILRHGARKHPDKEAVYF----DGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPK 78 (521)
T ss_pred cccCCHHHHHHHHHHHCCCceEEEe----CCceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 5677999999999999999999995 456699999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC--------------------------cCC--------------------------------
Q psy9113 100 IGAVHSIVVSKCSGDDMST--------------------------VPA-------------------------------- 121 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~--------------------------~~~-------------------------------- 121 (281)
+|++++++++..+.+++.. .+.
T Consensus 79 ~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (521)
T PRK06187 79 IGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDT 158 (521)
T ss_pred cCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCcc
Confidence 9999999999877665444 000
Q ss_pred --Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceE
Q psy9113 122 --NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATS 198 (281)
Q Consensus 122 --~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~ 198 (281)
......++++ +.|||||||.||+|.++|.++.. ........+++.++++++...|++|.+++... +.++..|+++
T Consensus 159 ~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~l~~G~~~ 236 (521)
T PRK06187 159 FDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFL-HSLAVCAWLKLSRDDVYLVIVPMFHVHAWGLP-YLALMAGAKQ 236 (521)
T ss_pred CCCCCCCccceEEEEECCCCCCCCceEEeehHHHHH-HHHHHHHhhCCCCCCEEEEeCCchHHhhHHHH-HHHHHhCCEE
Confidence 0011224677 99999999999999999999888 66666668889999999999999999988644 4599999999
Q ss_pred EEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 199 VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 199 v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++. + ..+++.+++.++++++|.++ .+|.++..+++....... ...+++.+..+|+.-.
T Consensus 237 v~~--~----~~~~~~~~~~l~~~~~t~l~---~~p~~~~~l~~~~~~~~~-~~~~l~~v~~~Ge~l~ 294 (521)
T PRK06187 237 VIP--R----RFDPENLLDLIETERVTFFF---AVPTIWQMLLKAPRAYFV-DFSSLRLVIYGGAALP 294 (521)
T ss_pred Eec--C----CCCHHHHHHHHHHhCCeEEE---chHHHHHHHHcCcCCCcc-CcchhhEEEEcCcCCC
Confidence 998 5 35899999999999999977 566667777766654221 3334444445555443
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=233.70 Aligned_cols=207 Identities=20% Similarity=0.237 Sum_probs=171.1
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.|+.+++.+.++++||++|+.+ .++++||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|+
T Consensus 14 ~~~~~~l~~~~~~~p~~~Al~~----~~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G~ 89 (579)
T PLN03102 14 LTPITFLKRASECYPNRTSIIY----GKTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGA 89 (579)
T ss_pred ccHHHHHHHHHHhCCCCeEEEE----CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 5789999999999999999985 457899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC--------------------------cC---------C---C-------c--------------
Q psy9113 103 VHSIVVSKCSGDDMST--------------------------VP---------A---N-------S-------------- 123 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~--------------------------~~---------~---~-------~-------------- 123 (281)
+++|+++.++.+++.+ .+ . . .
T Consensus 90 ~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (579)
T PLN03102 90 VLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRG 169 (579)
T ss_pred EEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHHhcc
Confidence 9999999987777666 00 0 0 0
Q ss_pred ------------hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHh
Q psy9113 124 ------------ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYG 190 (281)
Q Consensus 124 ------------~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~ 190 (281)
....++++ ++|||||||.||+|+++|+++.. ..........+...++++..+|++|..|+. ..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~-~~~~ 247 (579)
T PLN03102 170 EPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYL-STLSAIIGWEMGTCPVYLWTLPMFHCNGWT-FTWG 247 (579)
T ss_pred CCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHH-HHHHHHhhcCCCCCCeEEecCChhhhcchh-HHHH
Confidence 01225677 99999999999999999999765 333333344566778899999999999975 5677
Q ss_pred hhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 191 PLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 191 ~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
++..|+++++. + .++++.+++.++++++|++. .+|.++..+++..
T Consensus 248 ~~~~g~~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~ 292 (579)
T PLN03102 248 TAARGGTSVCM--R----HVTAPEIYKNIEMHNVTHMC---CVPTVFNILLKGN 292 (579)
T ss_pred HHHhcCcEEee--c----cCChHHHHHHHHHcCCeEEE---eChHHHHHHHhCc
Confidence 88899999888 4 56788999999999999977 6666666766543
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=272.27 Aligned_cols=233 Identities=18% Similarity=0.159 Sum_probs=193.3
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++.+++.+.++++||++|+++ .++.+||+||.++++++|+.|.++|+++|++|+++++|+++++++++||+++|
T Consensus 1573 ~~~~~~~~~~~a~~~p~~~Av~~----~~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~~V~l~~~~s~~~vv~~lavlkaG 1648 (3956)
T PRK12467 1573 ARLVHQLIEDQAAATPEAVALVF----GEQELTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAG 1648 (3956)
T ss_pred cccHHHHHHHHHHhCCCCeEEEe----CCcEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEccCCHHHHHHHHHhhccC
Confidence 45899999999999999999995 56799999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC-------------------cCC------------------------Cchhhhcccc-eeeeec
Q psy9113 102 AVHSIVVSKCSGDDMST-------------------VPA------------------------NSERERKLKL-RKVVTG 137 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~-------------------~~~------------------------~~~~~~~~~~-i~~TSG 137 (281)
++++|++|.++.+++.+ .+. ......++++ ++||||
T Consensus 1649 ~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiyTSG 1728 (3956)
T PRK12467 1649 GAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQEDDWLEGYSDSNPAVNLAPQNLAYVIYTSG 1728 (3956)
T ss_pred ceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEeccccchhccCCCCCCCCCCCCcCcEEEEECCC
Confidence 99999999998887666 000 0011235678 999999
Q ss_pred CCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccce
Q psy9113 138 STGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWI 217 (281)
Q Consensus 138 TTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~ 217 (281)
|||+||||+++|+++.+ ........+++.++|+++...|++|..++ ..++.+|..|+++++. +.. ...+++.+++
T Consensus 1729 STG~PKGV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~--~~~-~~~~~~~l~~ 1803 (3956)
T PRK12467 1729 STGRPKGAGNRHGALVN-RLCATQEAYQLSAADVVLQFTSFAFDVSV-WELFWPLINGARLVIA--PPG-AHRDPEQLIQ 1803 (3956)
T ss_pred cCCCCCEEEEcCHHHHH-HHHHHHHhcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEc--Chh-hcCCHHHHHH
Confidence 99999999999999998 77777778899999999999999999986 5889999999999998 422 2468999999
Q ss_pred eeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcce
Q psy9113 218 TGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRM 268 (281)
Q Consensus 218 ~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~ 268 (281)
.++++++|++. .+|.++..+++..... ....+|+.+..+|+.-...
T Consensus 1804 ~i~~~~vt~~~---~~Ps~~~~l~~~~~~~--~~~~~lr~v~~gGe~l~~~ 1849 (3956)
T PRK12467 1804 LIERQQVTTLH---FVPSMLQQLLQMDEQV--EHPLSLRRVVCGGEALEVE 1849 (3956)
T ss_pred HHHHcCCeEEE---CCHHHHHHHHhhcccc--ccCCCceEEEEccccCCHH
Confidence 99999999987 6666666666532211 1334566666677765543
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=234.23 Aligned_cols=208 Identities=18% Similarity=0.118 Sum_probs=164.3
Q ss_pred cccchhhhhccCCCCCCCCCccccCC-------------C----------CCCeeeeHHHHHHHHHHHHHHHHHCCCCCC
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGND-------------P----------DDYSRLTYKKLLEEVCKCANVLKSKGVQKG 77 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~-------------~----------~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g 77 (281)
+..|+.++|.+.++++||++|+.+.+ + +.++.+||+|+.++++++|+.|.++|+++|
T Consensus 67 ~~~t~~~~~~~~~~~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~g 146 (700)
T PTZ00216 67 YGPNFLQRLERICKERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKG 146 (700)
T ss_pred CCCCHHHHHHHHHHhCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45699999999999999999998631 1 146899999999999999999999999999
Q ss_pred CEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC-----------------------c---CCC---------
Q psy9113 78 DRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST-----------------------V---PAN--------- 122 (281)
Q Consensus 78 ~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~-----------------------~---~~~--------- 122 (281)
|+|+++++|+++|+++++||+++|++++|+++.++.+++.+ . ..+
T Consensus 147 d~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii~~~~ 226 (700)
T PTZ00216 147 SNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDS 226 (700)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEEEECC
Confidence 99999999999999999999999999999999988877666 0 000
Q ss_pred --------------------------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhc-----
Q psy9113 123 --------------------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVF----- 164 (281)
Q Consensus 123 --------------------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~----- 164 (281)
.....++++ ++|||||||.||||++||+++.+ ........+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~-~~~~~~~~~~~~~~ 305 (700)
T PTZ00216 227 LPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTA-GILALEDRLNDLIG 305 (700)
T ss_pred CccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHH-HHHHHHhhcccccC
Confidence 001235677 99999999999999999999988 555443322
Q ss_pred cCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccc-------eeeeeeccceeccCCchhHHH
Q psy9113 165 DYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGW-------ITGHTYVVYGPLANGATSVIV 237 (281)
Q Consensus 165 ~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-------~~i~~~~vt~~~~~~~~~~~~ 237 (281)
...++|++++++|++|++++. .....+..|+++.+. ++..+. ..++++++|.+. .+|.++
T Consensus 306 ~~~~~d~~ls~lPl~H~~~~~-~~~~~l~~G~~v~~~---------~~~~l~~~~~~~~~~l~~~~pT~~~---~vP~~~ 372 (700)
T PTZ00216 306 PPEEDETYCSYLPLAHIMEFG-VTNIFLARGALIGFG---------SPRTLTDTFARPHGDLTEFRPVFLI---GVPRIF 372 (700)
T ss_pred CCCCCCEEEEEChHHHHHHHH-HHHHHHHcCCEEEEC---------CHHHhhhhhccccchHHHcCCcEEE---echHHH
Confidence 236789999999999999975 445667788877664 222332 368899999976 455555
Q ss_pred HHHHH
Q psy9113 238 SETLK 242 (281)
Q Consensus 238 ~~ll~ 242 (281)
..+.+
T Consensus 373 ~~l~~ 377 (700)
T PTZ00216 373 DTIKK 377 (700)
T ss_pred HHHHH
Confidence 65554
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=229.16 Aligned_cols=206 Identities=16% Similarity=0.074 Sum_probs=172.5
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGV-QKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
+.|+.++|.+.+ .|+++|+++ .+..+||+||.+++.++|..|.+.|+ ++|++|+++++|+++++++++||+++
T Consensus 2 ~~~~~~~l~~~~--~p~~~Al~~----~~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~~ 75 (540)
T PRK13388 2 RDTIAQLLRDRA--GDDTIAVRY----GDRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAALG 75 (540)
T ss_pred chhHHHHHHhhc--cCCceEEEE----CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHhC
Confidence 347888888765 699999985 45799999999999999999999999 79999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC----------------------cCC--------C-----------------chhhhcccc-e
Q psy9113 101 GAVHSIVVSKCSGDDMST----------------------VPA--------N-----------------SERERKLKL-R 132 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~----------------------~~~--------~-----------------~~~~~~~~~-i 132 (281)
|++++|++|.++.+++.+ ... . .....++++ +
T Consensus 76 Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 155 (540)
T PRK13388 76 GYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAAAGALTPHREVDAMDPFML 155 (540)
T ss_pred CCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhccccCcCCCCCCCCCCeEEE
Confidence 999999999988876655 000 0 011236778 9
Q ss_pred eeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccc
Q psy9113 133 KVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTA 212 (281)
Q Consensus 133 ~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 212 (281)
+|||||||.||||.++|+++.. ........+++.++|+++..+|++|.+|+...++.++..|+++++. + .+++
T Consensus 156 ~~TSGTTG~PKgv~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~--~----~~~~ 228 (540)
T PRK13388 156 IFTSGTTGAPKAVRCSHGRLAF-AGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALP--A----KFSA 228 (540)
T ss_pred EECCCCCCCCCEEEecHHHHHH-HHHHHHHHhCCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEEC--C----CCCH
Confidence 9999999999999999999987 7777777788999999999999999999876677789999999988 4 5788
Q ss_pred cccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 213 DVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 213 ~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
..+++.++++++|.+. ..+..+..++..
T Consensus 229 ~~~~~~i~~~~vt~~~---~~p~~l~~l~~~ 256 (540)
T PRK13388 229 SGFLDDVRRYGATYFN---YVGKPLAYILAT 256 (540)
T ss_pred HHHHHHHHHhCCeEEE---ehHHHHHHHHhC
Confidence 9999999999999976 344444444443
|
|
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=229.67 Aligned_cols=235 Identities=19% Similarity=0.083 Sum_probs=183.2
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
++.+.|...++..|+.+++.+. +..+.+||.||+++++++|..|.+.|+++||+|+++++|+++++++++||+++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g~v 80 (545)
T PRK07768 3 RFTEKMYANARTSPRGMVTGEP--DAPVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGAS 80 (545)
T ss_pred hHHHHHHHHhhCCCcceEEecC--CCceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcCcc
Confidence 5788888999999999988654 45678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC--------------------------c-----------CC----------Cchhhhcccc-eeee
Q psy9113 104 HSIVVSKCSGDDMST--------------------------V-----------PA----------NSERERKLKL-RKVV 135 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~--------------------------~-----------~~----------~~~~~~~~~~-i~~T 135 (281)
++++++..+.+++.. . .. ......++++ ++||
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~i~~T 160 (545)
T PRK07768 81 LTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLTVADLLAADPIDPVETGEDDLALMQLT 160 (545)
T ss_pred ccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCceeehhhhcccCCCCcCCCCCCCEEEEEeC
Confidence 999988776554321 0 00 0011235777 9999
Q ss_pred ecCCCCCceEEEechhHHHHHHHhhhhhccCCCC-CEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccc
Q psy9113 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPG-DIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADV 214 (281)
Q Consensus 136 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~-~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~ 214 (281)
|||||.||+|+++|+++.. .........++.++ |++++.+|++|.+|+...++.++..|+++++. +......++..
T Consensus 161 SGtTG~PKgv~~s~~~~~~-~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~--~~~~~~~~~~~ 237 (545)
T PRK07768 161 SGSTGSPKAVQITHGNLYA-NAEAMFVAAEFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKV--TPMDFLRDPLL 237 (545)
T ss_pred CCCCCCCceEEEcHHHHHH-HHHHHHHhcCCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEe--CHHHHHHhHHH
Confidence 9999999999999999988 66666666777776 89999999999999877788899999999988 42222347888
Q ss_pred cceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 215 GWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 215 ~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++.+++++++.+. .|+.++..+...+.........++++++.+...|.
T Consensus 238 ~~~~i~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~ 286 (545)
T PRK07768 238 WAELISKYRGTMTA---APNFAYALLARRLRRQAKPGAFDLSSLRFALNGAE 286 (545)
T ss_pred HHHHHHHhCCEEEE---CchHHHHHHHHHHhccccccCCCchheeeEEeccC
Confidence 99999999999965 55555555554442211112355666666555444
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=230.93 Aligned_cols=208 Identities=19% Similarity=0.171 Sum_probs=164.8
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
++.+.+... +.+|+++|+++. ..+..+||+||.++++++|+.|++ .|+++||+|+++++|+.+++++++||+++|+
T Consensus 41 ~~~~~l~~~-~~~~~~~a~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 117 (560)
T PLN02574 41 DAVSFIFSH-HNHNGDTALIDS--STGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGG 117 (560)
T ss_pred CHHHHHhcC-cccCCCCEEEEC--CCCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHhCe
Confidence 333344433 568999999863 234579999999999999999999 9999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-----------------------------cCC--------------------------Cchhhh
Q psy9113 103 VHSIVVSKCSGDDMST-----------------------------VPA--------------------------NSERER 127 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-----------------------------~~~--------------------------~~~~~~ 127 (281)
+++|++|..+.+++.+ ... ......
T Consensus 118 v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (560)
T PLN02574 118 IVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVPKPVIKQ 197 (560)
T ss_pred EEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCcccccccCccCcccHHHHhhcCCcccccCCCCc
Confidence 9999999988776655 000 000123
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh----hcc-CCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEe
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY----VFD-YKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~----~~~-~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~ 201 (281)
++++ ++|||||||.||||+++|+++.. ....... ... ...+++++..+|++|.+|+...++.++..|+++++.
T Consensus 198 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~ 276 (560)
T PLN02574 198 DDVAAIMYSSGTTGASKGVVLTHRNLIA-MVELFVRFEASQYEYPGSDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVM 276 (560)
T ss_pred CCEEEEEcCCCccCCCcEEEEeHHHHHH-HHHHHHhccccccccCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEe
Confidence 5677 99999999999999999999887 4443322 122 235678899999999999877788889999999998
Q ss_pred cCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 202 SLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
+ .++++.+++.+++|++|.++ .+|.++..+++..
T Consensus 277 --~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~ 310 (560)
T PLN02574 277 --R----RFDASDMVKVIDRFKVTHFP---VVPPILMALTKKA 310 (560)
T ss_pred --c----CCCHHHHHHHHHHcCCeEEe---cCCHHHHHHHhCc
Confidence 4 67899999999999999976 4455556666543
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=234.98 Aligned_cols=237 Identities=14% Similarity=-0.033 Sum_probs=173.2
Q ss_pred ccchhhhhccCCCCCCCCCccccCC-----CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGND-----PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~-----~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
..|+.+.|++.++.+||++|+++.+ .+..+.+||+||.++++++|+.|.+. +++||+|+++++|+++++++++|
T Consensus 20 ~~~l~~~l~~~a~~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA 98 (631)
T PRK07769 20 NTNLVRHVERWAKVRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFG 98 (631)
T ss_pred cCCHHHHHHHHHHhCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHH
Confidence 3589999999999999999988642 12346899999999999999999987 89999999999999999999999
Q ss_pred HHHhcCeEEEe-ecCCC--CCCcCC--------------------------cC---------C------------Cchhh
Q psy9113 97 CARIGAVHSIV-VSKCS--GDDMST--------------------------VP---------A------------NSERE 126 (281)
Q Consensus 97 ~~~~G~~~v~l-~~~~~--~~~~~~--------------------------~~---------~------------~~~~~ 126 (281)
|+++|++++|+ ++..+ .+++.+ .+ . .....
T Consensus 99 ~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (631)
T PRK07769 99 ALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVPDEVGATWVPPEAN 178 (631)
T ss_pred HHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccccccccccccCCCCCC
Confidence 99999999999 34332 122222 00 0 00112
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
.++++ |+|||||||.||||+++|+++.. ........+++.++++++..+|++|.+|+. .++.+++.|+++++. +.
T Consensus 179 ~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~Pl~h~~gl~-~~~~~~~~G~~~~~~--~~ 254 (631)
T PRK07769 179 EDTIAYLQYTSGSTRIPAGVQITHLNLPT-NVLQVIDALEGQEGDRGVSWLPFFHDMGLI-TVLLPALLGHYITFM--SP 254 (631)
T ss_pred CCCeEEEEeCCCCCCCCcEEEEcHHHHHH-HHHHHHHHcCCCCcceEEEeCCCcCchhhH-HHHHHHhhCCeEEEE--Ch
Confidence 35778 99999999999999999999988 666666677888899999999999999986 456777889999887 32
Q ss_pred ccccccccccceeeeeecc---ceeccCCchhHHHHHHHHhhcccc-ccccccchhhhhccCCCc
Q psy9113 206 EIYWCTADVGWITGHTYVV---YGPLANGATSVIVSETLKMLNTNF-FCILYTISSLMWAGSLDI 266 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~v---t~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~L~sl~~~g~~g~ 266 (281)
..+..++..+++.++++++ +.+. .+|.. +..++....... .....++++++.+...|.
T Consensus 255 ~~~~~~~~~~~~~i~~~~~~~~~~~~--~~p~~-~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~ 316 (631)
T PRK07769 255 AAFVRRPGRWIRELARKPGGTGGTFS--AAPNF-AFEHAAARGLPKDGEPPLDLSNVKGLLNGSE 316 (631)
T ss_pred HHHHhCHHHHHHHHHhhccccCceEe--eCCch-HHHHHHhhccchhcccCcchhheeeEEeccC
Confidence 1112388999999999886 4533 33433 333333211110 001346667765554444
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=227.79 Aligned_cols=204 Identities=22% Similarity=0.220 Sum_probs=172.9
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
++.+.+.+.++++|+++++.+ .++.+||+||.+++.++|+.|++.|+.+|++|+++++|+++++++++||+++|++
T Consensus 1 ~~~~~~~~~~~~~p~~~a~~~----~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G~~ 76 (515)
T TIGR03098 1 LLHHLLEDAAARLPDATALVH----HDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGV 76 (515)
T ss_pred CHHHHHHHHHHHCCCCeEEEE----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCEE
Confidence 467888999999999999985 4578999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC------------------------cC-------------------------CC-----------c
Q psy9113 104 HSIVVSKCSGDDMST------------------------VP-------------------------AN-----------S 123 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~------------------------~~-------------------------~~-----------~ 123 (281)
++|+++..+.+++.. .. +. .
T Consensus 77 ~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (515)
T TIGR03098 77 FVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDADPPH 156 (515)
T ss_pred EEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhccccccccC
Confidence 999999877766554 00 00 0
Q ss_pred hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEec
Q psy9113 124 ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202 (281)
Q Consensus 124 ~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~ 202 (281)
....++++ ++|||||||.||+|.+||+++.. ........+++.++|++++.+|++|.+|+. .++.++..|+++++.
T Consensus 157 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~~- 233 (515)
T TIGR03098 157 PVIDSDMAAILYTSGSTGRPKGVVLSHRNLVA-GAQSVATYLENRPDDRLLAVLPLSFDYGFN-QLTTAFYVGATVVLH- 233 (515)
T ss_pred CCCcCCeEEEEECCCCCCCCceEEEecHHHHH-HHHHHHHHhCCCcccEEEEECchhhHhHHH-HHHHHHHcCCEEEEc-
Confidence 01124567 99999999999999999999988 666666667888899999999999999985 789999999999988
Q ss_pred CCCccccccccccceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 203 LPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
+ .++++.+++.++++++|.+. .+|.++..+.+
T Consensus 234 -~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~ 265 (515)
T TIGR03098 234 -D----YLLPRDVLKALEKHGITGLA---AVPPLWAQLAQ 265 (515)
T ss_pred -C----CCCHHHHHHHHHHcCCceEe---cChHHHHHHHh
Confidence 5 57899999999999999976 55555566554
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-29 Score=274.09 Aligned_cols=232 Identities=17% Similarity=0.147 Sum_probs=194.6
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++++.+.+.++.+||++|+++ .++.+||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|
T Consensus 2002 ~~~~~~~~~~~a~~~p~~~A~~~----~~~~lTy~eL~~~a~~lA~~L~~~gv~~g~~V~l~~~~s~~~~~~~lAil~aG 2077 (5163)
T PRK12316 2002 GPGVHQRIAEQAARAPEAIAVVF----GDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAG 2077 (5163)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEc----CCCeEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhc
Confidence 34799999999999999999995 56789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC-------------------cC---------C--------------Cchhhhcccc-eeeeecC
Q psy9113 102 AVHSIVVSKCSGDDMST-------------------VP---------A--------------NSERERKLKL-RKVVTGS 138 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~-------------------~~---------~--------------~~~~~~~~~~-i~~TSGT 138 (281)
++++|++|.++.+++.+ .+ . .....+++++ ++|||||
T Consensus 2078 a~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 2157 (5163)
T PRK12316 2078 GAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRDAEWADYPDTAPAVQLAGENLAYVIYTSGS 2157 (5163)
T ss_pred eEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccchhhhhccCccCCCCCCCCCCeEEEEeCccC
Confidence 99999999998877766 00 0 0012336778 9999999
Q ss_pred CCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccccccee
Q psy9113 139 TGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWIT 218 (281)
Q Consensus 139 TG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~ 218 (281)
||+||||+++|+++.+ ........+++.++++++...|++|..++ ..++.+|..|+++++. +. ..++++.+++.
T Consensus 2158 TG~PKgV~~~h~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~~~~~--~~--~~~~~~~~~~~ 2231 (5163)
T PRK12316 2158 TGLPKGVAVSHGALVA-HCQAAGERYELSPADCELQFMSFSFDGAH-EQWFHPLLNGARVLIR--DD--ELWDPEQLYDE 2231 (5163)
T ss_pred CCCCCEeEEccHHHHH-HHHHHHHhcCCCCcceEEEecCchHHHHH-HHHHHHHhCCCEEEeC--Cc--ccCCHHHHHHH
Confidence 9999999999999998 77777788899999999999999999876 6899999999999776 32 25689999999
Q ss_pred eeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcce
Q psy9113 219 GHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRM 268 (281)
Q Consensus 219 i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~ 268 (281)
++++++|+++ .+|.++..+.+...... ...+|+.+..+|+.-...
T Consensus 2232 i~~~~vt~~~---~~P~~~~~l~~~~~~~~--~~~~lr~~~~gGe~l~~~ 2276 (5163)
T PRK12316 2232 MERHGVTILD---FPPVYLQQLAEHAERDG--RPPAVRVYCFGGEAVPAA 2276 (5163)
T ss_pred HHHcCCeEEE---cChHHHHHHHhhhhccc--CCcceeEEEEecccCCHH
Confidence 9999999987 66777776666543322 223677777888766543
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=225.34 Aligned_cols=224 Identities=20% Similarity=0.150 Sum_probs=181.4
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
+.++.+.+.+.+ .+|+++|+.+ .+++.+||+||.+++.++|..|++.|+++||+|+++++|++++++.++||.++|
T Consensus 2 ~~~l~~~~~~~~-~~~~~~a~~~---~~~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~G 77 (504)
T PRK07514 2 NNNLFDALRAAF-ADRDAPFIET---PDGLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAG 77 (504)
T ss_pred CccHHHHHHHHh-hCCCCeEEEe---CCCCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 568899999999 8999999885 356899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC--------------------------cCC--------------------------Cchhhhcc
Q psy9113 102 AVHSIVVSKCSGDDMST--------------------------VPA--------------------------NSERERKL 129 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~--------------------------~~~--------------------------~~~~~~~~ 129 (281)
++++|+++..+.+++.. ... ......++
T Consensus 78 ~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (504)
T PRK07514 78 AVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAPDDFETVPRGADD 157 (504)
T ss_pred cEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcCcccCcccCCCCC
Confidence 99999999887765543 000 00112356
Q ss_pred cc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccc
Q psy9113 130 KL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIY 208 (281)
Q Consensus 130 ~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~ 208 (281)
++ ++|||||||.||+|.++|+++.. .........++.++|++++.+|++|..|+...++.++..|+++++. +
T Consensus 158 ~a~i~~TSGtTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~---- 230 (504)
T PRK07514 158 LAAILYTSGTTGRSKGAMLSHGNLLS-NALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFL--P---- 230 (504)
T ss_pred eEEEEECCCCCCCCcEEEEecHHHHH-HHHHHHHHhCCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEEC--C----
Confidence 77 99999999999999999999998 6666667788889999999999999999887889999999999998 5
Q ss_pred cccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 209 WCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 209 ~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
..+++.+++.+ +++|.+. ..|.++..++..... ...++++++.+...|
T Consensus 231 ~~~~~~~~~~i--~~~t~~~---~~P~~~~~l~~~~~~----~~~~~~~lr~~~~gg 278 (504)
T PRK07514 231 KFDPDAVLALM--PRATVMM---GVPTFYTRLLQEPRL----TREAAAHMRLFISGS 278 (504)
T ss_pred CCCHHHHHHHH--Hhheeee---cHHHHHHHHHcCCCC----CcccccceeeEEecC
Confidence 56889999988 4788855 455555666654332 223445555444433
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-29 Score=232.60 Aligned_cols=236 Identities=16% Similarity=0.121 Sum_probs=174.2
Q ss_pred cchhhhhccCCCCCCCCCccccCCC-----CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHH
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDP-----DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~-----~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~ 97 (281)
+++.++|.+.+..+||++|+++.+. +..+.+||+||.+++.++|+.|.+.| .+||+|+++++|+++++++++||
T Consensus 1 ~s~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~ 79 (578)
T PRK05850 1 SSVPSLLRERASLQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGA 79 (578)
T ss_pred CcHHHHHHHHHhcCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHH
Confidence 3678899999999999999985321 22478999999999999999999999 68999999999999999999999
Q ss_pred HHhcCeEEEeecCC---CCCCcCC-------------------c----------CC------------------Cchhhh
Q psy9113 98 ARIGAVHSIVVSKC---SGDDMST-------------------V----------PA------------------NSERER 127 (281)
Q Consensus 98 ~~~G~~~v~l~~~~---~~~~~~~-------------------~----------~~------------------~~~~~~ 127 (281)
+++|++++|+++.. +.+++.+ . .. ......
T Consensus 80 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (578)
T PRK05850 80 LQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDSPRGSDARPRDL 159 (578)
T ss_pred HHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccccccCCccccCCCCC
Confidence 99999999998733 3444333 0 00 001223
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh-hcc-----CCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEE
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY-VFD-----YKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~-~~~-----~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
++++ ++|||||||.||||+++|+++.. ....... .+. ...++++++.+|++|.+|++..++.+++.|+++++
T Consensus 160 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~ 238 (578)
T PRK05850 160 PSTAYLQYTSGSTRTPAGVMVSHRNVIA-NFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGCPAVL 238 (578)
T ss_pred CCeEEEEeCCCCCCCCceEEEeHHHHHH-HHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHHHHHhcCCcEEE
Confidence 5778 99999999999999999999987 4433322 222 34578999999999999988889999999999999
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
. +......++..+++.+++++++... +|+.++..+......... ...++++++.+...|.
T Consensus 239 ~--~~~~~~~~p~~~~~~i~~~~~~~~~---~p~~~~~~~~~~~~~~~~-~~~~~~~lr~~~~gg~ 298 (578)
T PRK05850 239 T--SPVAFLQRPARWMQLLASNPHAFSA---APNFAFELAVRKTSDDDM-AGLDLGGVLGIISGSE 298 (578)
T ss_pred e--CHHHHHHCHHHHHHHHHHcCCeEEe---CCcHHHHHHHHhcchhhh-cCcchhhheeEEECcC
Confidence 8 4211224789999999999998643 455443333332222111 2335556665544443
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-29 Score=274.11 Aligned_cols=239 Identities=18% Similarity=0.171 Sum_probs=197.7
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
....++++++++.++++||++|+++ .++.+||+||.++++++|+.|.+.|+++|++|+++++|+++++++++||++
T Consensus 4548 ~~~~~~~~l~~~~a~~~p~~~Av~~----~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V~i~~~~s~~~iv~~lavl~ 4623 (5163)
T PRK12316 4548 PATRCVHQLVAERARMTPDAVAVVF----DEEKLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLK 4623 (5163)
T ss_pred CccccHHHHHHHHHHhCCCCeEEEe----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 3456899999999999999999995 467899999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC-------------------cC---------------C--------Cchhhhcccc-eeeee
Q psy9113 100 IGAVHSIVVSKCSGDDMST-------------------VP---------------A--------NSERERKLKL-RKVVT 136 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~-------------------~~---------------~--------~~~~~~~~~~-i~~TS 136 (281)
+|++++|++|.++.+++.+ .+ . .....+++++ ++|||
T Consensus 4624 aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 4703 (5163)
T PRK12316 4624 AGGAYVPLDPEYPRERLAYMMEDSGAALLLTQSHLLQRLPIPDGLASLALDRDEDWEGFPAHDPAVRLHPDNLAYVIYTS 4703 (5163)
T ss_pred hCcEEecCCCCChHHHHHHHHHhcCCCEEEechhhhhhcccccCcceEeecchhhcccCCccCCccCCCCCceEEEEECC
Confidence 9999999999998776665 00 0 0011235778 99999
Q ss_pred cCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccc
Q psy9113 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGW 216 (281)
Q Consensus 137 GTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~ 216 (281)
||||+||||+++|+++.+ ........+++.++|+++...|++|..+. ..++.+|..|+++++. +.. .+++..++
T Consensus 4704 GSTG~PKgV~~~h~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~L~~G~~lvi~--~~~--~~~~~~l~ 4777 (5163)
T PRK12316 4704 GSTGRPKGVAVSHGSLVN-HLHATGERYELTPDDRVLQFMSFSFDGSH-EGLYHPLINGASVVIR--DDS--LWDPERLY 4777 (5163)
T ss_pred CCCCCCCEeeeccHHHHH-HHHHHHHhcCCCcCCeEEEecCcchhhHH-HHHHHHHhCCCEEEEc--Ccc--cCCHHHHH
Confidence 999999999999999998 77777778899999999999999999886 5889999999999998 432 23899999
Q ss_pred eeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcceeehhh
Q psy9113 217 ITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRMWCMVL 273 (281)
Q Consensus 217 ~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~~~~~l 273 (281)
+.++++++|+++ .+|.++..+++...... ...+|+.+..+|+.-.....+.+
T Consensus 4778 ~~i~~~~vt~~~---~~Ps~~~~l~~~~~~~~--~~~~lr~v~~gGe~l~~~~~~~~ 4829 (5163)
T PRK12316 4778 AEIHEHRVTVLV---FPPVYLQQLAEHAERDG--EPPSLRVYCFGGEAVAQASYDLA 4829 (5163)
T ss_pred HHHHHcCCEEEE---cCHHHHHHHHhhhcccc--CCCCccEEEEecccCCHHHHHHH
Confidence 999999999987 66677777766543322 33566777777776655444333
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=227.60 Aligned_cols=207 Identities=16% Similarity=0.124 Sum_probs=172.9
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
++.+.|.+.++.+|+++|+.+ .++.+||+||.+++.++|..|.+.|+++|++|+++++|+.+++++++||+++|++
T Consensus 1 ~~~~~l~~~a~~~p~~~a~~~----~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~ 76 (502)
T TIGR01734 1 KLIEAIQAFAETYPQTIAYRY----QGQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHA 76 (502)
T ss_pred CHHHHHHHHHHHCCCceEEEc----CCcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 467888999999999999984 5689999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC-------------------------cC---------------CCchhhhcccc-eeeeecCCCCC
Q psy9113 104 HSIVVSKCSGDDMST-------------------------VP---------------ANSERERKLKL-RKVVTGSTGKP 142 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~-------------------------~~---------------~~~~~~~~~~~-i~~TSGTTG~P 142 (281)
++|+++.++.+++.+ +. .......++.+ ++|||||||.|
T Consensus 77 ~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~P 156 (502)
T TIGR01734 77 YIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVGTQIITLSALEQAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNP 156 (502)
T ss_pred EeCCCCcChHHHHHHHHHhcCCCEEEecccccccccCCceEEchHhhhhhhhcCCccccccCCCCCeEEEEECCCCCCCC
Confidence 999999988876655 00 00111235677 99999999999
Q ss_pred ceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeee
Q psy9113 143 KGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTY 222 (281)
Q Consensus 143 K~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~ 222 (281)
|+|.++|+++.. ........++...+++++...|++|..++ ..++.++..|+++++. +.. ...++..+++.++++
T Consensus 157 K~v~~s~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~--~~~-~~~~~~~~~~~i~~~ 231 (502)
T TIGR01734 157 KGVQISHDNLVS-FTNWMLADFPLSEGKQFLNQAPFSFDLSV-MDLYPCLASGGTLHCL--DKD-ITNNFKLLFEELPKT 231 (502)
T ss_pred CEEEEecHHHHH-HHHHHHHhCCCCCCceEEeecCceechhH-HHHHHHHHCCCEEEEc--CHH-HhcCHHHHHHHHHHc
Confidence 999999999988 66666666788889999999999999987 5789999999999998 421 246889999999999
Q ss_pred ccceeccCCchhHHHHHHHH
Q psy9113 223 VVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 223 ~vt~~~~~~~~~~~~~~ll~ 242 (281)
+++.+. ..|.++..++.
T Consensus 232 ~~~~~~---~~p~~~~~~l~ 248 (502)
T TIGR01734 232 GLNVWV---STPSFVDMCLL 248 (502)
T ss_pred CCeEEE---EChhHHHHHHh
Confidence 999966 44445444443
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=230.04 Aligned_cols=212 Identities=20% Similarity=0.200 Sum_probs=168.8
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCC------CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHH
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPD------DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~------~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~l 95 (281)
..|+.+.+.+.++++||++|+++.+.. ..+.+||+||.+++.++|+.|.+.|+++||+|+++++|+++++++++
T Consensus 5 ~~~~~~~l~~~a~~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~l 84 (552)
T PRK09274 5 MANIARHLPRAAQERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTF 84 (552)
T ss_pred hhhHHHHHHHHHHhCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHH
Confidence 457889999999999999999864321 12489999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeecCCCCCCcCC----------c--C--------------------------------CC---------
Q psy9113 96 ACARIGAVHSIVVSKCSGDDMST----------V--P--------------------------------AN--------- 122 (281)
Q Consensus 96 A~~~~G~~~v~l~~~~~~~~~~~----------~--~--------------------------------~~--------- 122 (281)
||+++|++++|+++.++.+++.+ + + +.
T Consensus 85 a~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 164 (552)
T PRK09274 85 ALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRDGAAA 164 (552)
T ss_pred HHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhcccCccc
Confidence 99999999999999876655443 0 0 00
Q ss_pred ----chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 123 ----SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 123 ----~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.....++++ ++|||||||.||+|+++|+++.. ........+++.++++.+..+|++|.+++ ..|.+
T Consensus 165 ~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~pl~~~~~~--------~~g~~ 235 (552)
T PRK09274 165 PFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEA-QIEALREDYGIEPGEIDLPTFPLFALFGP--------ALGMT 235 (552)
T ss_pred cCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHH-HHHHHHHHhCCCCCceeeeccCHHHhhhh--------hhCCe
Confidence 001225677 99999999999999999999988 66666777888999999999999886653 24777
Q ss_pred EEEecCC-CccccccccccceeeeeeccceeccCCchhHHHHHHHHhhc
Q psy9113 198 SVIVSLP-GEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLN 245 (281)
Q Consensus 198 ~v~~~~~-~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~ 245 (281)
+++.... ..+..++++.+++.++++++|+++ .+|.++..+++...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~ 281 (552)
T PRK09274 236 SVIPDMDPTRPATVDPAKLFAAIERYGVTNLF---GSPALLERLGRYGE 281 (552)
T ss_pred EEecCcccccccccCHHHHHHHHHHcCCeEEe---ccHHHHHHHHHHhh
Confidence 7776111 011246889999999999999977 66666677766544
|
|
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=232.36 Aligned_cols=235 Identities=14% Similarity=0.013 Sum_probs=168.7
Q ss_pred cchhhhhccCCCCCCCCCccccCCC-----CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHH
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDP-----DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~-----~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~ 97 (281)
.|+.+++.+.++.+|+++|+++.+. +..+.+||+||.+++.++|++|.+. +++||+|+++++|+++++++++||
T Consensus 34 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~ 112 (612)
T PRK12476 34 TTLISLIERNIANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAA 112 (612)
T ss_pred CcHHHHHHHHHHhCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHH
Confidence 4888999999999999999886421 2246899999999999999999986 899999999999999999999999
Q ss_pred HHhcCeEEEe-ecCCC--CCCcCC--------------------------cCC----------------C-----chhhh
Q psy9113 98 ARIGAVHSIV-VSKCS--GDDMST--------------------------VPA----------------N-----SERER 127 (281)
Q Consensus 98 ~~~G~~~v~l-~~~~~--~~~~~~--------------------------~~~----------------~-----~~~~~ 127 (281)
+++|++++|+ ++.++ .+++.+ .+. . .....
T Consensus 113 ~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 192 (612)
T PRK12476 113 IKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVELDT 192 (612)
T ss_pred HHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEeccccccccccccCCCCCC
Confidence 9999999999 46554 333332 000 0 01123
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhcc-CCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFD-YKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
++++ ++|||||||.||||+++|+++.. ........++ +.++++.++.+|++|.+|+... +.++..|++.++. ..
T Consensus 193 ~d~a~i~yTSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~l~~~Pl~h~~g~~~~-~~~~~~gg~~~~~--~~ 268 (612)
T PRK12476 193 DDVSHLQYTSGSTRPPVGVEITHRAVGT-NLVQMILSIDLLDRNTHGVSWLPLYHDMGLSMI-GFPAVYGGHSTLM--SP 268 (612)
T ss_pred CceEEEEeCCCCCCCCceEEeeHHHHHH-HHHHHHHHhccCCCCceEEEeCCcccccchHHH-HHHHhcCCeEEEE--CH
Confidence 5778 99999999999999999999987 5555555566 6788999999999999998644 4444455555555 21
Q ss_pred ccccccccccceeee--eeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 206 EIYWCTADVGWITGH--TYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~--~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.....++..+++.++ +++++.++ .+|. ++..++............++++++ +...|.
T Consensus 269 ~~~~~~p~~~~~~i~~~~~~~t~~~--~~P~-~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~ 327 (612)
T PRK12476 269 TAFVRRPQRWIKALSEGSRTGRVVT--AAPN-FAYEWAAQRGLPAEGDDIDLSNVV-LIIGSE 327 (612)
T ss_pred HHHHHHHHHHHHHHhhhccCCeEEE--eCCc-HHHHHHHHhcChhhhcCcchhHhe-EEeccc
Confidence 112248899999994 58888855 3343 344444432111101233566666 444443
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=228.40 Aligned_cols=234 Identities=14% Similarity=0.111 Sum_probs=181.3
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..|+.+++++.++++||++++++...+..+++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|
T Consensus 9 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G 88 (542)
T PRK06018 9 PLLCHRIIDHAARIHGNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIG 88 (542)
T ss_pred CCCHHHHHHHHHHhCCCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhcC
Confidence 45899999999999999999985322446889999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC--------------------------cC---------CC------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST--------------------------VP---------AN------------------------ 122 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~--------------------------~~---------~~------------------------ 122 (281)
++++|+++..+.+++.+ .+ ..
T Consensus 89 ~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (542)
T PRK06018 89 AICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGD 168 (542)
T ss_pred eEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCcc
Confidence 99999999987766655 00 00
Q ss_pred ---chhhhcccc-eeeeecCCCCCceEEEechhHH-HHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 123 ---SERERKLKL-RKVVTGSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 123 ---~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~-~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.....++++ ++|||||||.||+|.+||+++. ...........++..+|+++...|++|.+++. ..+.++..|++
T Consensus 169 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~h~~~~~-~~~~~~~~g~~ 247 (542)
T PRK06018 169 FAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWG-IAFSAPSMGTK 247 (542)
T ss_pred cCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHHHHhhhH-HHHhhhhcCce
Confidence 001234567 9999999999999999999743 21223334456788899999999999999875 44678899999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
+++. . ..++++.+++.++++++|.++ .+|.++..+++....... ...+++.+..+|++.
T Consensus 248 ~v~~--~---~~~~~~~~~~~l~~~~~t~~~---~~p~~~~~l~~~~~~~~~-~~~~lr~~~~~G~~l 306 (542)
T PRK06018 248 LVMP--G---AKLDGASVYELLDTEKVTFTA---GVPTVWLMLLQYMEKEGL-KLPHLKMVVCGGSAM 306 (542)
T ss_pred EEcc--C---cCCCHHHHHHHHHhcCCceee---cCcHHHHHHHhcccccCC-CcccceEEEEcCCCC
Confidence 9886 3 256889999999999999977 556666666665543221 223444444555543
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=229.92 Aligned_cols=244 Identities=15% Similarity=0.020 Sum_probs=182.5
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTM 94 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~ 94 (281)
++...-+..|+.+++...++.+|+.+++ +.+++..+.+||+||++++.++|+.|+++|+++|++|+++++|+.++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~ 91 (579)
T PRK09192 13 LPRRYADFPTLVEALDYAALGEAGMNFY-DRRGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAF 91 (579)
T ss_pred ccccccchhhHHHHHHHhhccCCceEEE-ecCCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHH
Confidence 3333344469999999999988866544 433333578999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeecCCCC-------CCcCC-----------------------c-----------------CC----Cc
Q psy9113 95 LACARIGAVHSIVVSKCSG-------DDMST-----------------------V-----------------PA----NS 123 (281)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~-------~~~~~-----------------------~-----------------~~----~~ 123 (281)
+||+++|++++|+++..+. +++.+ . .. ..
T Consensus 92 lA~~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (579)
T PRK09192 92 FACQYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLSHAWFKALPEADVALP 171 (579)
T ss_pred HHHHHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccceeehhhhcccCCCccccC
Confidence 9999999999999764431 22222 0 00 01
Q ss_pred hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh-hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEe
Q psy9113 124 ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY-VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201 (281)
Q Consensus 124 ~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~-~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~ 201 (281)
....++++ ++|||||||.||+|.++|+++.. ....... .+++.++|+++..+|++|.+|+...++.++..|+++++.
T Consensus 172 ~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (579)
T PRK09192 172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMA-NLRAISHDGLKVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (579)
T ss_pred CCCCCCeEEEEecCCCCCCCceEEeeHHHHHH-HHHHHHhhcccCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEee
Confidence 12235678 99999999999999999999988 5555555 788899999999999999999887788889999999887
Q ss_pred cCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 202 SLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+......++..+++.+.+++++..+ .|+.++..+........ ....++++++.++..|.
T Consensus 251 --~~~~~~~~~~~~~~~i~~~~~t~~~---~~~~~~~l~~~~~~~~~-~~~~~l~~lr~~~~gG~ 309 (579)
T PRK09192 251 --PTRDFARRPLQWLDLISRNRGTISY---SPPFGYELCARRVNSKD-LAELDLSCWRVAGIGAD 309 (579)
T ss_pred --CHHHHHHCHHHHHHHHHhcCcEEEe---CCcHHHHHHHHhhcccc-ccccchhhhheeEecCc
Confidence 4222234788999999999998865 45554433332222111 13356677776655554
|
|
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=227.11 Aligned_cols=216 Identities=19% Similarity=0.219 Sum_probs=181.7
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTM 94 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~ 94 (281)
+.+...+..|+.+++.+.++++|+++|+++ .++.+||+||.+++.++|..|.+.|+++|++|+++++|++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~ 79 (524)
T PRK06188 4 MADLLHSGATYGHLLVSALKRYPDRPALVL----GDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAI 79 (524)
T ss_pred hHhhhcCCccHHHHHHHHHHHCCCCeEEEE----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHH
Confidence 345566677999999999999999999995 4579999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeecCCCCCCcCC-----------c-CC-----------------------------------------
Q psy9113 95 LACARIGAVHSIVVSKCSGDDMST-----------V-PA----------------------------------------- 121 (281)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~~~~~~-----------~-~~----------------------------------------- 121 (281)
+||+++|++++|+++..+.+++.. . +.
T Consensus 80 la~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (524)
T PRK06188 80 GAAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAKFGPA 159 (524)
T ss_pred HHHHHhCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhccCcc
Confidence 999999999999998876554333 0 00
Q ss_pred --Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceE
Q psy9113 122 --NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATS 198 (281)
Q Consensus 122 --~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~ 198 (281)
......++++ ++|||||||.||+|.++|.++.. ........+++..+++++..+|++|.+|+ .++.++..|+++
T Consensus 160 ~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~-~~~~~~~~~~~~~~~~~l~~~pl~~~~g~--~~~~~l~~G~~~ 236 (524)
T PRK06188 160 PLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIAT-MAQIQLAEWEWPADPRFLMCTPLSHAGGA--FFLPTLLRGGTV 236 (524)
T ss_pred cccccCCCCCeEEEEeCCCCCCCCceeeeehHHHHH-HHHHHHhhcCCCcCcEEEEecCchhhhhH--HHHHHHHcCCEE
Confidence 0001124567 99999999999999999999988 67777777888899999999999999886 367889999999
Q ss_pred EEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcc
Q psy9113 199 VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNT 246 (281)
Q Consensus 199 v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~ 246 (281)
++. + .++++.+++.++++++|+++ .+|.++..+++....
T Consensus 237 ~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~l~~l~~~~~~ 275 (524)
T PRK06188 237 IVL--A----KFDPAEVLRAIEEQRITATF---LVPTMIYALLDHPDL 275 (524)
T ss_pred EEc--C----CCCHHHHHHHHHHhCCEEEE---ehHHHHHHHHhCcCc
Confidence 999 5 57899999999999999977 666666777766543
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=228.53 Aligned_cols=233 Identities=15% Similarity=0.106 Sum_probs=181.8
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
+...|+.++|++.+..+||++|+++. .+.++.+||+||.+++.++|..|.+ .|+++||+|+++++|+.+++++++||+
T Consensus 7 ~~~~~~~~~l~~~a~~~~~~~a~~~~-~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~ 85 (576)
T PRK05620 7 DVPLSLTRILEYGSTVHGDTTVTTWG-GAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVA 85 (576)
T ss_pred cCCCcHHHHHHHHHHhCCCceEEEEc-CCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34568999999999999999998863 2346899999999999999999986 799999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC--------------------------cC------------C-------------------
Q psy9113 99 RIGAVHSIVVSKCSGDDMST--------------------------VP------------A------------------- 121 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~--------------------------~~------------~------------------- 121 (281)
++|++++++++..+.+++.+ .+ .
T Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 165 (576)
T PRK05620 86 CMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEAL 165 (576)
T ss_pred hcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHH
Confidence 99999999999887776666 00 0
Q ss_pred ---------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHh--hhhhccCCCCCEEEEeCchhhhhhHhHHHH
Q psy9113 122 ---------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT--HKYVFDYKPGDIYWCTADVGWITGHTYVVY 189 (281)
Q Consensus 122 ---------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~ 189 (281)
......++++ ++|||||||.||||+++|+++.. .... ....+++.+++++++.+|++|.+|+. ..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~-~~~ 243 (576)
T PRK05620 166 LDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYL-QSLSLRTTDSLAVTHGESFLCCVPIYHVLSWG-VPL 243 (576)
T ss_pred hhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHH-HHHHhhhhhhcCCCCCCeEEEeCChHHhhhhH-HHH
Confidence 0011225667 99999999999999999999865 3332 23346788899999999999999974 668
Q ss_pred hhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCC
Q psy9113 190 GPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSL 264 (281)
Q Consensus 190 ~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~ 264 (281)
.++..|+++++. +. .++++.+++.++++++|.++ ..|.++..++........ ...+++.+..+|+.
T Consensus 244 ~~l~~g~~~~~~--~~---~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~l~~~~~gG~~ 309 (576)
T PRK05620 244 AAFMSGTPLVFP--GP---DLSAPTLAKIIATAMPRVAH---GVPTLWIQLMVHYLKNPP-ERMSLQEIYVGGSA 309 (576)
T ss_pred HHHhcCceEEec--CC---CCCHHHHHHHHHHhcCceee---ecCHHHHHHHHHhhccCc-ccCceeEEEEcCCC
Confidence 899999999987 42 46899999999999999966 444455555554322211 22345555455543
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-28 Score=229.28 Aligned_cols=230 Identities=20% Similarity=0.140 Sum_probs=183.1
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
..+|+.+.+.+.++.+|+++|+.+ .++.+||.||.++++++|..|.+.|+++|++|+++++|+++++++++||+++
T Consensus 15 ~~~n~~~~~~~~a~~~~~~~a~~~----~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a~~~~ 90 (542)
T PRK07786 15 RRQNWVNQLARHALMQPDAPALRF----LGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANML 90 (542)
T ss_pred cccCHHHHHHHHHHHCCCCeEEEe----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 456899999999999999999985 4579999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC--------------------------cC------------------C------------Cch
Q psy9113 101 GAVHSIVVSKCSGDDMST--------------------------VP------------------A------------NSE 124 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~--------------------------~~------------------~------------~~~ 124 (281)
|++++|+++..+.+++.. .+ + ...
T Consensus 91 G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (542)
T PRK07786 91 GAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGPAHAPVD 170 (542)
T ss_pred CeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCCCCCCCC
Confidence 999999998876555444 00 0 000
Q ss_pred hhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccC-CCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEec
Q psy9113 125 RERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDY-KPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202 (281)
Q Consensus 125 ~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~-~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~ 202 (281)
...++++ ++|||||||.||+|.++|+++.. ........++. .+++++++..|++|.+|+ ..++.++..|+++++.
T Consensus 171 ~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~- 247 (542)
T PRK07786 171 IPNDSPALIMYTSGTTGRPKGAVLTHANLTG-QAMTCLRTNGADINSDVGFVGVPLFHIAGI-GSMLPGLLLGAPTVIY- 247 (542)
T ss_pred CCCCCeEEEEeCCCCCccchhhhhhHHHHHH-HHHHHHHhcCCCCCCceEEEecchHHHHHH-HHHHHHHHccCEEEEc-
Confidence 1124577 99999999999999999999987 55555555565 567899999999999998 5789999999999997
Q ss_pred CCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 203 LPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
+. ..++++.+++.++++++|.++ .+|.++..++....... ....++.+..+|+.-
T Consensus 248 -~~--~~~~~~~~~~~i~~~~~t~~~---~~P~~l~~l~~~~~~~~--~~~~lr~i~~gg~~~ 302 (542)
T PRK07786 248 -PL--GAFDPGQLLDVLEAEKVTGIF---LVPAQWQAVCAEQQARP--RDLALRVLSWGAAPA 302 (542)
T ss_pred -cC--CCcCHHHHHHHHHHcCCeEEE---ehHHHHHHHHhCcccCc--cCcceEEEEECCCCC
Confidence 31 146899999999999999977 56666777766544322 222445444455443
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-28 Score=221.77 Aligned_cols=202 Identities=18% Similarity=0.174 Sum_probs=166.0
Q ss_pred ccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeec
Q psy9113 30 TPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS 109 (281)
Q Consensus 30 ~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~ 109 (281)
+.+++.+||++|+.+. ..++.+||+|+.+++.++|..|.+.|+++|++|+++++|+++++++++||+++|++++|+++
T Consensus 2 ~~~a~~~p~~~a~~~~--~~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~ 79 (488)
T PRK09088 2 AFHARLQPQRLAAVDL--ALGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNW 79 (488)
T ss_pred chhhhhCCCceEEEec--CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCc
Confidence 4566789999998752 24579999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCC-----------------------cCC--------------Cchhhhcccc-eeeeecCCCCCceEEEechh
Q psy9113 110 KCSGDDMST-----------------------VPA--------------NSERERKLKL-RKVVTGSTGKPKGVLHTTGG 151 (281)
Q Consensus 110 ~~~~~~~~~-----------------------~~~--------------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~ 151 (281)
..+.+++.+ ... ......++++ ++|||||||.||+|.++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~ 159 (488)
T PRK09088 80 RLSASELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERN 159 (488)
T ss_pred cCCHHHHHHHHHhCCCCEEEEcchhhcccccccchhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehHH
Confidence 988776655 000 0011225677 99999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeee--eeccceecc
Q psy9113 152 YLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGH--TYVVYGPLA 229 (281)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~--~~~vt~~~~ 229 (281)
+.. .............++++++.+|++|.+|+...+..++..|+++++. + .+++...+..+. ++++|.++
T Consensus 160 l~~-~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~--~----~~~~~~~~~~~~~~~~~~t~~~- 231 (488)
T PRK09088 160 LQQ-TAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVS--N----GFEPKRTLGRLGDPALGITHYF- 231 (488)
T ss_pred HHH-HHHHHHHhhCCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEc--C----CCCHHHHHHHHHhhccCCcEEe-
Confidence 987 6655555667788999999999999999988888999999999988 4 567788888775 58899866
Q ss_pred CCchhHHHHHHHHh
Q psy9113 230 NGATSVIVSETLKM 243 (281)
Q Consensus 230 ~~~~~~~~~~ll~~ 243 (281)
..|.++..+.+.
T Consensus 232 --~~P~~~~~l~~~ 243 (488)
T PRK09088 232 --CVPQMAQAFRAQ 243 (488)
T ss_pred --eHHHHHHHHHhC
Confidence 555566555543
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-28 Score=226.29 Aligned_cols=210 Identities=19% Similarity=0.113 Sum_probs=168.8
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..|+.+.+.+.++.+|+++|+.+. .+++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|
T Consensus 27 ~~~~~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 104 (546)
T PLN02330 27 KLTLPDFVLQDAELYADKVAFVEA--VTGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAG 104 (546)
T ss_pred CCcHHHHHhhhhhcCCCccEEEec--CCCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhC
Confidence 368999999999999999999853 235789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------------c-------C---------------C---------Cchhhhc
Q psy9113 102 AVHSIVVSKCSGDDMST----------------------V-------P---------------A---------NSERERK 128 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------------~-------~---------------~---------~~~~~~~ 128 (281)
++++|+++..+.+++.+ . . . ......+
T Consensus 105 ~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (546)
T PLN02330 105 GVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEILQT 184 (546)
T ss_pred cEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHHHHHhhccccCcccccccCCcc
Confidence 99999999887665554 0 0 0 0001124
Q ss_pred ccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhc--cCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 129 LKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVF--DYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 129 ~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~--~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
+++ ++|||||||.||||.++|+++.. ......... .....++.+..+|++|.+|+...++.++..|+++++. +
T Consensus 185 ~~a~il~TSGTTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~--~- 260 (546)
T PLN02330 185 DLCALPFSSGTTGISKGVMLTHRNLVA-NLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVM--S- 260 (546)
T ss_pred cEEEEEeCCCCcCCCcEEEEehHHHHH-HHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEe--c-
Confidence 667 99999999999999999999887 443221111 1223468899999999999877788999999999998 4
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
.+++..+++.++++++|.+. ..|.++..+++.
T Consensus 261 ---~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~ 292 (546)
T PLN02330 261 ---RFELRTFLNALITQEVSFAP---IVPPIILNLVKN 292 (546)
T ss_pred ---ccCHHHHHHHHHHcCCeeee---cCCHHHHHHHhC
Confidence 68899999999999999955 334444555543
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-28 Score=225.30 Aligned_cols=232 Identities=16% Similarity=0.095 Sum_probs=179.4
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
...++.+.+.+.++.+||++|+.+ +.+.+||+|+.++++++|+.|.+.|+++|++|+++++|+++++++++||..+
T Consensus 33 ~~~~~~~~~~~~a~~~p~~~a~~~----~~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 108 (516)
T PRK13383 33 GGTNPYTLLAVTAARWPGRTAIID----DDGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLL 108 (516)
T ss_pred cCCcHHHHHHHHHHHCCCCcEEEe----CCCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 356899999999999999999985 4568999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC-----------------------------cCCC---------chhhhcccc-eeeeecCCCC
Q psy9113 101 GAVHSIVVSKCSGDDMST-----------------------------VPAN---------SERERKLKL-RKVVTGSTGK 141 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~-----------------------------~~~~---------~~~~~~~~~-i~~TSGTTG~ 141 (281)
|++++|+++.++.+++.+ +... .....++.. ++|||||||.
T Consensus 109 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~il~TSGTTG~ 188 (516)
T PRK13383 109 GADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAGAEESGGRPAVAAPGRIVLLTSGTTGK 188 (516)
T ss_pred CeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhhhhcCCCCCCCCCCCcEEEECCCCCCC
Confidence 999999999998887765 0000 000123456 9999999999
Q ss_pred CceEEEechhHHHH-HHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeee
Q psy9113 142 PKGVLHTTGGYLLY-AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGH 220 (281)
Q Consensus 142 PK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~ 220 (281)
||+|.++|...... .........++..+++++..+|++|.+|+. .++.++..|+++++. + .++++.+++.++
T Consensus 189 PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~h~~g~~-~~~~~l~~G~~~~~~--~----~~~~~~~~~~i~ 261 (516)
T PRK13383 189 PKGVPRAPQLRSAVGVWVTILDRTRLRTGSRISVAMPMFHGLGLG-MLMLTIALGGTVLTH--R----HFDAEAALAQAS 261 (516)
T ss_pred CCeeeecchhhhhhhhHHhHHhhhccCCCCeEEEecCCcchhhHH-HHHHHHhcCCEEEEC--C----CCCHHHHHHHHH
Confidence 99999999743220 111223346778899999999999999985 678889999999887 4 678999999999
Q ss_pred eeccceeccCCchhHHHHHHHHhhcccc-ccccccchhhhhccCCCc
Q psy9113 221 TYVVYGPLANGATSVIVSETLKMLNTNF-FCILYTISSLMWAGSLDI 266 (281)
Q Consensus 221 ~~~vt~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~L~sl~~~g~~g~ 266 (281)
++++|.+. ..|.++..+++...... ......++.+..+|++..
T Consensus 262 ~~~~t~~~---~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~ 305 (516)
T PRK13383 262 LHRADAFT---AVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLD 305 (516)
T ss_pred HhCCcEEE---ecHHHHHHHHhccccccccCCCCceEEEEECCCCCC
Confidence 99999977 55556666665433211 112234555555555543
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-28 Score=225.05 Aligned_cols=215 Identities=15% Similarity=0.096 Sum_probs=172.5
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.++.++|+..++.+|++.++.+...++.+.+||.||.++++++|.+|.+.|+++||+|+++++|+++++++++||.++|+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~G~ 89 (539)
T PRK07008 10 LLISSLIAHAARHAGDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGSGA 89 (539)
T ss_pred CCHHHHHHHHHhhCCCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 37899999999999998888754223457899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC--------------------------c---------------CCC-------------------
Q psy9113 103 VHSIVVSKCSGDDMST--------------------------V---------------PAN------------------- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~--------------------------~---------------~~~------------------- 122 (281)
+++|+++.++.+++.+ . +..
T Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 169 (539)
T PRK07008 90 VCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDYD 169 (539)
T ss_pred EEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCcC
Confidence 9999999877776544 0 000
Q ss_pred -chhhhcccc-eeeeecCCCCCceEEEechhHHHH-HHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEE
Q psy9113 123 -SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLY-AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSV 199 (281)
Q Consensus 123 -~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v 199 (281)
.....++++ ++|||||||.||+|++||+++... ........++..++|+++...|++|.+++. .++.++..|++++
T Consensus 170 ~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~~ 248 (539)
T PRK07008 170 WPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWG-LPYSAPLTGAKLV 248 (539)
T ss_pred cccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchHHhhhHH-HHHHHHhcCceEE
Confidence 001224566 999999999999999999998651 122233456778899999999999988763 4578899999999
Q ss_pred EecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcc
Q psy9113 200 IVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNT 246 (281)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~ 246 (281)
+. +. .++++.+++.++++++|.+. .+|.++..+++....
T Consensus 249 ~~--~~---~~~~~~~~~~l~~~~vt~~~---~~P~~~~~l~~~~~~ 287 (539)
T PRK07008 249 LP--GP---DLDGKSLYELIEAERVTFSA---GVPTVWLGLLNHMRE 287 (539)
T ss_pred Ee--cC---CcCHHHHHHHHHHcCCEEEE---echHHHHHHHhcccc
Confidence 87 42 56899999999999999966 555666666665543
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=222.61 Aligned_cols=206 Identities=17% Similarity=0.086 Sum_probs=173.4
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
..++.++|.+.+. +|++++++ .++.+||+||++++.++|++|+++ |++++++|+++++|+++++++++||+++
T Consensus 4 ~~~~~~~l~~~a~--~~~~a~~~----~~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~~ 77 (529)
T PRK07867 4 APTVAELLLPLAE--DDDRGLYF----EDSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAALS 77 (529)
T ss_pred cccHHHHHHHhcc--cCCceEEE----CCcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 4478899988885 78899885 458999999999999999999997 8899999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC----------------------c---------C---C-------------Cchhhhcccc-e
Q psy9113 101 GAVHSIVVSKCSGDDMST----------------------V---------P---A-------------NSERERKLKL-R 132 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~----------------------~---------~---~-------------~~~~~~~~~~-i 132 (281)
|++++|+++..+.+++.+ . + + ......++++ +
T Consensus 78 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i 157 (529)
T PRK07867 78 GIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDAEPPFRVADPDDLFML 157 (529)
T ss_pred CCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccccHHHHhcccCCCCCCcccCCccceEEE
Confidence 999999999999888766 0 0 0 0001235677 9
Q ss_pred eeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccc
Q psy9113 133 KVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTA 212 (281)
Q Consensus 133 ~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 212 (281)
+|||||||.||+|+++|+++.. ........+++.++|+++..+|++|.+|+...++.++..|+++++. + .+++
T Consensus 158 ~~TSGTTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~--~----~~~~ 230 (529)
T PRK07867 158 IFTSGTSGDPKAVRCTHRKVAS-AGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALR--R----KFSA 230 (529)
T ss_pred EECCCCCCCCcEEEecHHHHHH-HHHHHHHhhCCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEec--C----CCCH
Confidence 9999999999999999999987 6666777788889999999999999999887888899999999998 4 5789
Q ss_pred cccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 213 DVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 213 ~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
+.+++.++++++|.+. ++|..+..++..
T Consensus 231 ~~~~~~i~~~~vt~~~---~~p~~~~~ll~~ 258 (529)
T PRK07867 231 SGFLPDVRRYGATYAN---YVGKPLSYVLAT 258 (529)
T ss_pred HHHHHHHHHhCCeEEe---ccHHHHHHHHhC
Confidence 9999999999999976 333444444443
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-28 Score=226.50 Aligned_cols=207 Identities=17% Similarity=0.198 Sum_probs=169.2
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.|+.+.+.+.++.+|+++|+.+ ..+.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 20 ~~~~~~~~~~~~~~p~~~a~~~----~~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G~ 95 (567)
T PLN02479 20 LTPLWFLERAAVVHPTRKSVVH----GSVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGA 95 (567)
T ss_pred cCHHHHHHHHHhhCCCceEEEE----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCCc
Confidence 4678888999999999999985 456899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------c----------------C------CC----------------------------
Q psy9113 103 VHSIVVSKCSGDDMST----------V----------------P------AN---------------------------- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------~----------------~------~~---------------------------- 122 (281)
+++|+++.++.+++.+ + . ..
T Consensus 96 v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
T PLN02479 96 VVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKGAIEY 175 (567)
T ss_pred EEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccCcccH
Confidence 9999999988777665 0 0 00
Q ss_pred --------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHH
Q psy9113 123 --------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187 (281)
Q Consensus 123 --------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~ 187 (281)
.....++++ ++|||||||.||+|+++|+++.. ........+++.++++.+..+|++|.+|+...
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~ 254 (567)
T PLN02479 176 EKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYL-MALSNALIWGMNEGAVYLWTLPMFHCNGWCFT 254 (567)
T ss_pred HHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHH-HHHHHHhhcCCCCCCEEEEecchhhhhhHHHH
Confidence 000012456 99999999999999999999876 55444556778889999999999999997655
Q ss_pred HHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 188 VYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 188 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
+...+..|.++++. .++++.+++.++++++|+++ .+|.++..+++..
T Consensus 255 ~~~~~~~g~~~~~~-------~~~~~~~~~~l~~~~~t~~~---~~P~~~~~l~~~~ 301 (567)
T PLN02479 255 WTLAALCGTNICLR-------QVTAKAIYSAIANYGVTHFC---AAPVVLNTIVNAP 301 (567)
T ss_pred HHHHhhcCceEecc-------CCCHHHHHHHHHHcCCeEEE---ecHHHHHHHHhhh
Confidence 55566667666554 67899999999999999976 5566666666554
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-28 Score=226.93 Aligned_cols=213 Identities=23% Similarity=0.261 Sum_probs=174.5
Q ss_pred eccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 17 DTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 17 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
....+..++.+.+.+.++.+||++|+.+ .++.+||+||.+++.++|..|.++|+++|++|+++++|+++++++++|
T Consensus 27 ~~~~~~~~l~~~l~~~a~~~p~~~al~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA 102 (567)
T PRK06178 27 EYPHGERPLTEYLRAWARERPQRPAIIF----YGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFG 102 (567)
T ss_pred CCCcCcccHHHHHHHHHHHCCCceEEEE----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHHHHHHH
Confidence 3344556899999999999999999985 357899999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC----------------------c------------------CC---------------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST----------------------V------------------PA--------------- 121 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~----------------------~------------------~~--------------- 121 (281)
|+++|++++|++|..+.+++.+ . +.
T Consensus 103 ~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (567)
T PRK06178 103 ILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRL 182 (567)
T ss_pred HHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEeccccccccccccccccccccccc
Confidence 9999999999999877654433 0 00
Q ss_pred --------------------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhh-hhhccCCCCCEEEEeCchh
Q psy9113 122 --------------------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTH-KYVFDYKPGDIYWCTADVG 179 (281)
Q Consensus 122 --------------------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~-~~~~~~~~~~~~l~~~pl~ 179 (281)
......++++ ++|||||||.||+|+++|+++.. ..... .......++++++..+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~ 261 (567)
T PRK06178 183 AAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVY-TAAAAYAVAVVGGEDSVFLSFLPEF 261 (567)
T ss_pred cccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHH-HHHHHHHHhccCCCCcEEEEecchH
Confidence 0001235677 99999999999999999999887 43332 2235678899999999999
Q ss_pred hhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 180 WITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 180 h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
|.+|+...++.++..|+++++. + .++++.+++.++++++|.++ .++.++..++..
T Consensus 262 ~~~g~~~~~~~~l~~G~~~~l~--~----~~~~~~~~~~i~~~~~t~~~---~~~~~~~~l~~~ 316 (567)
T PRK06178 262 WIAGENFGLLFPLFSGATLVLL--A----RWDAVAFMAAVERYRVTRTV---MLVDNAVELMDH 316 (567)
T ss_pred HHHHHHHHHHHHHHcCceEEEe--C----CCCHHHHHHHHHHhCCeEEe---ccHHHHHHHHhC
Confidence 9999877889999999999999 5 57899999999999999965 334444455443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-28 Score=245.22 Aligned_cols=209 Identities=19% Similarity=0.116 Sum_probs=177.2
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.|+.+.+.+.++++||++|+++ ..++++||+|+.++++++|+.|.+ ++++||+|+++++|+++++++++||+++|+
T Consensus 615 ~~l~~~~~~~a~~~p~~~a~~~---~~~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~G~ 690 (1146)
T PRK08633 615 PPLAEAWIDTAKRNWSRLAVAD---STGGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLAGK 690 (1146)
T ss_pred CCHHHHHHHHHHhcCCCcEEEc---CCCCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHcCC
Confidence 4788999999999999999985 245799999999999999999987 489999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-------------------cC-------C-------------------------------C---
Q psy9113 103 VHSIVVSKCSGDDMST-------------------VP-------A-------------------------------N--- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-------------------~~-------~-------------------------------~--- 122 (281)
+++|+++..+.+++.+ .. . +
T Consensus 691 v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 770 (1146)
T PRK08633 691 VPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLLPARL 770 (1146)
T ss_pred EEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccCCHHH
Confidence 9999999987765554 00 0 0
Q ss_pred ------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccC
Q psy9113 123 ------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195 (281)
Q Consensus 123 ------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G 195 (281)
.....++++ ++|||||||.||+|.++|+++.. ........++..++|++++.+|++|.+|+...++.++..|
T Consensus 771 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g 849 (1146)
T PRK08633 771 LKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILS-NIEQISDVFNLRNDDVILSSLPFFHSFGLTVTLWLPLLEG 849 (1146)
T ss_pred HHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHH-HHHHHHHhcCCCCCCEEEEcCcHHHHHhHHHHHHHHHHCC
Confidence 011235777 99999999999999999999998 6777777788899999999999999999877789999999
Q ss_pred ceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 196 ATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
+++++. ++ .++++.+++.++++++|++. .+|.++..+++..
T Consensus 850 ~~~v~~--~~---~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~ 890 (1146)
T PRK08633 850 IKVVYH--PD---PTDALGIAKLVAKHRATILL---GTPTFLRLYLRNK 890 (1146)
T ss_pred CEEEEe--CC---CCCHHHHHHHHHHcCCeEEE---ecHHHHHHHHhcc
Confidence 999998 42 46899999999999999977 5566666665543
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-28 Score=224.34 Aligned_cols=211 Identities=19% Similarity=0.207 Sum_probs=170.0
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
..+|+.+++.+.++++||++|+.+ .++.+||+|+.+++.++|..|++.|+++|++|+++++|+++++++++||+++
T Consensus 5 ~~~~~~~~~~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~ 80 (528)
T PRK07470 5 RVMNLAHFLRQAARRFPDRIALVW----GDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRL 80 (528)
T ss_pred cCCCHHHHHHHHHHHCCCceEEEE----CCccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 345789999999999999999985 4578999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC-----------cC--------------------------------------------CCchh
Q psy9113 101 GAVHSIVVSKCSGDDMST-----------VP--------------------------------------------ANSER 125 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~-----------~~--------------------------------------------~~~~~ 125 (281)
|++++++++..+.+++.+ .. .....
T Consensus 81 G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (528)
T PRK07470 81 GAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGARVANAAV 160 (528)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhcCCCCCCCcccC
Confidence 999999999887665554 00 00011
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHh-hhhh-ccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEec
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT-HKYV-FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~-~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~ 202 (281)
..++++ ++|||||||.||+|.++|+++.. .... .... .+..+.|+++..+|++|.+|+. .+ ..++.|++.++.
T Consensus 161 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~-~~-~~~~~g~~~~~~- 236 (528)
T PRK07470 161 DHDDPCWFFFTSGTTGRPKAAVLTHGQMAF-VITNHLADLMPGTTEQDASLVVAPLSHGAGIH-QL-CQVARGAATVLL- 236 (528)
T ss_pred CCCCeEEEEeCCCCCCCCcEEEEehhhHHH-HHHHHHHHhccCCCcccEEEEeccchhHHHHH-HH-HHHhcCceEEEe-
Confidence 235778 99999999999999999999875 3322 2222 2567789999999999999874 44 467788888777
Q ss_pred CCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhc
Q psy9113 203 LPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLN 245 (281)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~ 245 (281)
+. ..++++.+++.++++++|.+. .+|.++..+.+...
T Consensus 237 -~~--~~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~ 273 (528)
T PRK07470 237 -PS--ERFDPAEVWALVERHRVTNLF---TVPTILKMLVEHPA 273 (528)
T ss_pred -cc--cCcCHHHHHHHHHhcCCeEEe---chHHHHHHHHhCcC
Confidence 32 257899999999999999977 66666666665543
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-28 Score=266.86 Aligned_cols=229 Identities=14% Similarity=0.094 Sum_probs=191.5
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++++++++.++++||++|+++ .+..+||+||.++++++|+.|.++|+++|++|+++++++.+++++++|++++|
T Consensus 3719 ~~~~~~~~~~~~~~~p~~~Av~~----~~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~v~~~~s~~~~v~~lavlkaG 3794 (4334)
T PRK05691 3719 EQSYVRLFEAQVAAHPQRIAASC----LDQQWSYAELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAG 3794 (4334)
T ss_pred ccCHHHHHHHHHHhCCCceEEEc----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHhhC
Confidence 34899999999999999999995 56789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC--------------------------cC----------------------CCchhhhcccc-e
Q psy9113 102 AVHSIVVSKCSGDDMST--------------------------VP----------------------ANSERERKLKL-R 132 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~--------------------------~~----------------------~~~~~~~~~~~-i 132 (281)
+.+||++|.++.+++.+ .. ......+++.+ +
T Consensus 3795 ~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayv 3874 (4334)
T PRK05691 3795 AGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWEEVQAGEVASHNPGIYSGPDNLAYV 3874 (4334)
T ss_pred cEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeecccccccccccCCCCCCCCCceEEE
Confidence 99999999999887776 00 00011235678 9
Q ss_pred eeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccc
Q psy9113 133 KVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTA 212 (281)
Q Consensus 133 ~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 212 (281)
+|||||||+||||+++|+++.+ ........++++++++++...|++|..+. ..++.+|..|+++++. +.. ...++
T Consensus 3875 i~TSGSTG~PKGV~~~h~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~fd~s~-~~~~~~l~~G~~l~i~--~~~-~~~~~ 3949 (4334)
T PRK05691 3875 IYTSGSTGLPKGVMVEQRGMLN-NQLSKVPYLALSEADVIAQTASQSFDISV-WQFLAAPLFGARVEIV--PNA-IAHDP 3949 (4334)
T ss_pred EECCCCCCCCCEEEeehHHHHH-HHHHHHHhcCCCccceEEEecCCchhHHH-HHHHHHHhCCCEEEEc--Ccc-ccCCH
Confidence 9999999999999999999999 77777778899999999999999999986 6899999999999998 432 25688
Q ss_pred cccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 213 DVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 213 ~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
..+++.++++++|++. .+|.++..++..... ...+|+.+..+|+.-.
T Consensus 3950 ~~l~~~~~~~~vt~~~---~~Ps~~~~l~~~~~~----~~~~lr~~~~gGe~l~ 3996 (4334)
T PRK05691 3950 QGLLAHVQAQGITVLE---SVPSLIQGMLAEDRQ----ALDGLRWMLPTGEAMP 3996 (4334)
T ss_pred HHHHHHHHHcCCeEEE---eCHHHHHHHHhhccc----cCCCceEEEecCCcCC
Confidence 9999999999999977 556666666543221 2345666666676644
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-28 Score=265.81 Aligned_cols=233 Identities=19% Similarity=0.125 Sum_probs=193.3
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++++++.+.++++||++|+++ .++.+||+||.++++++|+.|.+.|+++|++|+++++|+.+++++++|++++|
T Consensus 2187 ~~~l~~~~~~~a~~~p~~~Av~~----~~~~lTY~eL~~~~~~lA~~L~~~Gv~~g~~V~l~~~~s~~~vv~~lailkaG 2262 (4334)
T PRK05691 2187 DQTLHGLFAAQAARTPQAPALTF----AGQTLSYAELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAG 2262 (4334)
T ss_pred ccchHHHHHHHHHHCCCCeEEEe----CCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 45799999999999999999995 56899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC-------------------c---C-------C---------------Cchhhhcccc-eeeee
Q psy9113 102 AVHSIVVSKCSGDDMST-------------------V---P-------A---------------NSERERKLKL-RKVVT 136 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~-------------------~---~-------~---------------~~~~~~~~~~-i~~TS 136 (281)
++++|++|.++.+++.+ . + . .....+++++ ++|||
T Consensus 2263 ~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 2342 (4334)
T PRK05691 2263 GAYVPLDPEYPLERLHYMIEDSGIGLLLSDRALFEALGELPAGVARWCLEDDAAALAAYSDAPLPFLSLPQHQAYLIYTS 2342 (4334)
T ss_pred cEeecCCCCChHHHHHHHHHhcCCCEEEeChhhhhhhccccccceeEEeccchhhhhcCCCCCCCCCCCCCCcEEEEeCC
Confidence 99999999998877666 0 0 0 0001235677 99999
Q ss_pred cCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccc
Q psy9113 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGW 216 (281)
Q Consensus 137 GTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~ 216 (281)
||||+||||+++|+++.. ........+++.++|+++...|++|..+. ..++.+|..|+++++. +. ..++++.++
T Consensus 2343 GSTG~PKGV~~~h~~l~~-~~~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~i~~~L~~G~~lvl~--~~--~~~~~~~l~ 2416 (4334)
T PRK05691 2343 GSTGKPKGVVVSHGEIAM-HCQAVIERFGMRADDCELHFYSINFDAAS-ERLLVPLLCGARVVLR--AQ--GQWGAEEIC 2416 (4334)
T ss_pred CCCCCCCEEEEecHHHHH-HHHHHHHhcCCCcccEEEEecCccHHHHH-HHHHHHHhCCCEEEEC--Cc--ccCCHHHHH
Confidence 999999999999999998 77777778899999999999999999886 6889999999999987 32 146889999
Q ss_pred eeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCccee
Q psy9113 217 ITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRMW 269 (281)
Q Consensus 217 ~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~~ 269 (281)
+.++++++|++. .+|.++..+++...... ...+|+.+..+|+.-....
T Consensus 2417 ~~i~~~~vt~~~---~tPs~~~~l~~~~~~~~--~~~~lr~i~~gGe~l~~~~ 2464 (4334)
T PRK05691 2417 QLIREQQVSILG---FTPSYGSQLAQWLAGQG--EQLPVRMCITGGEALTGEH 2464 (4334)
T ss_pred HHHHHcCCeEEE---cCHHHHHHHHHhhhccc--cCCCceEEEEccccCCHHH
Confidence 999999999977 56666666665543221 2345677777777655433
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-28 Score=222.49 Aligned_cols=231 Identities=17% Similarity=0.135 Sum_probs=184.0
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+++.+.|.+.++.+|+++++.+ .++.+||+||.+++.++|..|.+.|+++|++|+++.+|+.++++.++||+++|+
T Consensus 2 ~~~~~~l~~~a~~~p~~~~~~~----~~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G~ 77 (503)
T PRK04813 2 MDIIETIEEFAQTQPDFPAYDY----LGEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGH 77 (503)
T ss_pred chHHHHHHHHHHhCCCceEEEe----CCcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 4688999999999999999884 467899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC---------------c-------C-------------C-----Cchhhhcccc-eeeeecCCCC
Q psy9113 103 VHSIVVSKCSGDDMST---------------V-------P-------------A-----NSERERKLKL-RKVVTGSTGK 141 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~---------------~-------~-------------~-----~~~~~~~~~~-i~~TSGTTG~ 141 (281)
+++|+++..+.+++.+ . + . ......++++ ++|||||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~ 157 (503)
T PRK04813 78 AYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEILGIPVITLDELKDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGK 157 (503)
T ss_pred EEecCCCCChHHHHHHHHHhcCCCEEEecccccccccCCcEEehHHhhhhhhccccccccccCCCCCcEEEEECCCCCCC
Confidence 9999999988776554 0 0 0 0111235677 9999999999
Q ss_pred CceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 142 PKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 142 PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
||+|.++|+++.. ........+++..+++++...|++|..++ ..++.++..|+++++. +. ....++..+++.+++
T Consensus 158 PK~v~~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~v~~--~~-~~~~~~~~~~~~~~~ 232 (503)
T PRK04813 158 PKGVQISHDNLVS-FTNWMLEDFALPEGPQFLNQAPYSFDLSV-MDLYPTLASGGTLVAL--PK-DMTANFKQLFETLPQ 232 (503)
T ss_pred CcEEEeehHHHHH-HHHHHHHHcCCCcCceeeecCCcchhHhH-HHHHHHHhcCCEEEEc--Ch-hhhcCHHHHHHHHHH
Confidence 9999999999988 66666666788889999999999999886 5788999999999998 42 124689999999999
Q ss_pred eccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 222 YVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 222 ~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++++.+. .+|.++..++........ ...+++.+...|+.-.
T Consensus 233 ~~~t~~~---~~p~~~~~~~~~~~~~~~-~~~~l~~i~~~G~~l~ 273 (503)
T PRK04813 233 LPINVWV---STPSFADMCLLDPSFNEE-HLPNLTHFLFCGEELP 273 (503)
T ss_pred cCCeEEE---eChHHHHHHHHhhccCcc-cCCCceEEEEecCcCC
Confidence 9999976 555555544443322111 2334555555565443
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=222.19 Aligned_cols=211 Identities=23% Similarity=0.250 Sum_probs=170.2
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.|+.+++.+.++++||++|+.+ .++.+||.||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++|+
T Consensus 3 ~~l~~~~~~~a~~~p~~~a~~~----~~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G~ 78 (533)
T PRK07798 3 WNIADLFEAVADAVPDRVALVC----GDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARA 78 (533)
T ss_pred ccHHHHHHHHHHhCCCceEEEE----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCe
Confidence 4799999999999999999996 568999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------------------c-CC----------C---------------ch----------
Q psy9113 103 VHSIVVSKCSGDDMST----------------------V-PA----------N---------------SE---------- 124 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------------------~-~~----------~---------------~~---------- 124 (281)
+++++++..+.+++.+ . +. . +.
T Consensus 79 ~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (533)
T PRK07798 79 VPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDF 158 (533)
T ss_pred EEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCC
Confidence 9999999988877766 0 00 0 00
Q ss_pred -hhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh---------hccC------CCCCEEEEeCchhhhhhHhHH
Q psy9113 125 -RERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY---------VFDY------KPGDIYWCTADVGWITGHTYV 187 (281)
Q Consensus 125 -~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~---------~~~~------~~~~~~l~~~pl~h~~gl~~~ 187 (281)
...++.+ ++|||||||.||+|+++|+++.. ....... ...+ ..+++++...|++|..|+. .
T Consensus 159 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-~ 236 (533)
T PRK07798 159 GERSPDDLYLLYTGGTTGMPKGVMWRQEDIFR-VLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQW-A 236 (533)
T ss_pred CCCCCCceEEEECCCCCCCCcEEEEecHHHHH-HHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHH-H
Confidence 0012346 99999999999999999999876 3322111 1111 5678899999999999985 7
Q ss_pred HHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhc
Q psy9113 188 VYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLN 245 (281)
Q Consensus 188 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~ 245 (281)
++.+++.|+++++. +.. .+++..+++.++++++|.+. ..|+.+...+++.+.
T Consensus 237 ~~~~l~~G~~~~~~--~~~--~~~~~~~~~~i~~~~~t~~~--~~~~~~~~~l~~~~~ 288 (533)
T PRK07798 237 AFAALFSGQTVVLL--PDV--RFDADEVWRTIEREKVNVIT--IVGDAMARPLLDALE 288 (533)
T ss_pred HHHHHhcCceEEEe--cCC--CcCHHHHHHHHHHhCCeEEE--echHHHHHHHHHHhc
Confidence 89999999999999 421 57899999999999999955 344444445555554
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=224.20 Aligned_cols=208 Identities=17% Similarity=0.165 Sum_probs=167.2
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
.|+.+.|++.++.+|+++|+++ .++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+++++++++||+++|
T Consensus 24 ~~~~~~l~~~a~~~p~~~al~~----~~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~~G 99 (562)
T PRK05677 24 PNIQAVLKQSCQRFADKPAFSN----LGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAG 99 (562)
T ss_pred CcHHHHHHHHHHhCCCCeeEEE----CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4899999999999999999984 45799999999999999999997 599999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------c-------------C-----------C--------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST----------V-------------P-----------A-------------------------- 121 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------~-------------~-----------~-------------------------- 121 (281)
++++|+++..+.+++.+ + . .
T Consensus 100 a~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (562)
T PRK05677 100 LIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMVPAY 179 (562)
T ss_pred eEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhcccccccc
Confidence 99999999887655432 0 0 0
Q ss_pred ---------------------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhcc--CC-CCCEEEEeC
Q psy9113 122 ---------------------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFD--YK-PGDIYWCTA 176 (281)
Q Consensus 122 ---------------------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~--~~-~~~~~l~~~ 176 (281)
......++++ ++|||||||.||||+++|+++.. ........++ +. ..+++++.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 258 (562)
T PRK05677 180 HLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVA-NMLQCRALMGSNLNEGCEILIAPL 258 (562)
T ss_pred CCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHH-HHHHHHHHhccCCCCCccEEEEcC
Confidence 0001135677 99999999999999999999887 4443333332 33 346889999
Q ss_pred chhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 177 DVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 177 pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
|++|.+|+...++.++..|++.++. +. ..+++.+++.++++++|.++ ..|.++..++..
T Consensus 259 pl~h~~~~~~~~~~~~~~g~~~~~~--~~---~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~ 317 (562)
T PRK05677 259 PLYHIYAFTFHCMAMMLIGNHNILI--SN---PRDLPAMVKELGKWKFSGFV---GLNTLFVALCNN 317 (562)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEe--cC---cccHHHHHHHHHHcCceEEe---cHHHHHHHHHhC
Confidence 9999999877888889999988877 42 46788999999999999965 444445555543
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-27 Score=222.15 Aligned_cols=212 Identities=15% Similarity=0.090 Sum_probs=170.6
Q ss_pred ecccc----ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHH
Q psy9113 17 DTFWQ----TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVV 92 (281)
Q Consensus 17 ~~~~~----~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~ 92 (281)
...|+ ..|+.+++.+.++.+|+++|+.+ .++.+||.||.++++++|..|.+.|+.+|++|+++++|+.++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~~~----~~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~ 86 (541)
T TIGR03205 11 GVRWDATIARGTLPDLLSKAAADYGPRPALEF----RDRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPI 86 (541)
T ss_pred CCCcccCCCCCCHHHHHHHHHHHcCCCceEEE----CCcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHH
Confidence 36677 66999999999999999999985 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEeecCCCCCCcCC-----------cC-------------------------C-------------C-
Q psy9113 93 TMLACARIGAVHSIVVSKCSGDDMST-----------VP-------------------------A-------------N- 122 (281)
Q Consensus 93 ~~lA~~~~G~~~v~l~~~~~~~~~~~-----------~~-------------------------~-------------~- 122 (281)
+++||+++|++++|+++..+.+++.+ .. . .
T Consensus 87 ~~la~~~~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (541)
T TIGR03205 87 NFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPA 166 (541)
T ss_pred HHHHHHhcCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCC
Confidence 99999999999999999766544433 00 0 0
Q ss_pred --------------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh-----hccCCCCCEEEEeC
Q psy9113 123 --------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY-----VFDYKPGDIYWCTA 176 (281)
Q Consensus 123 --------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~-----~~~~~~~~~~l~~~ 176 (281)
.....++++ ++|||||||.||+|+++|+++.. ....... .......++++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (541)
T TIGR03205 167 DPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTS-AVSIYDVWGKPSRATRGDVERVICVL 245 (541)
T ss_pred CcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHH-HHHHHHhhcccccccCCCCceEEEec
Confidence 001224667 99999999999999999999876 3322111 11223357899999
Q ss_pred chhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 177 DVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 177 pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
|++|.+|+...++.++..|+++++. + .++++.+++.++++++|.+. .+|.++..+++
T Consensus 246 p~~~~~~~~~~~~~~l~~g~~~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~ 302 (541)
T TIGR03205 246 PLFHIYALTVILLRSLRRGDLISLH--Q----RFDVAAVFRDIEEKRATVFP---GVPTMWIALAN 302 (541)
T ss_pred cHHHHHHHHHHHHHHHhcCCEEEec--C----CCCHHHHHHHHHHcCCeEee---chHHHHHHHHh
Confidence 9999999887788999999998887 4 57899999999999999966 45555555554
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=221.75 Aligned_cols=226 Identities=19% Similarity=0.157 Sum_probs=175.0
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+++.+.+.+.++.+|+++|+++ .++.+||+||++++.++|+.|.+.|+++||+|+++++|+.+++++++||+++|+
T Consensus 24 ~~~~~~~~~~a~~~p~~~a~~~----~~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 99 (563)
T PRK06710 24 QPLHKYVEQMASRYPEKKALHF----LGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGG 99 (563)
T ss_pred ccHHHHHHHHHHHCCCceEEEe----cCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHcCe
Confidence 5789999999999999999985 567899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC------------cC----------------------------CC--------------------
Q psy9113 103 VHSIVVSKCSGDDMST------------VP----------------------------AN-------------------- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~------------~~----------------------------~~-------------------- 122 (281)
+++|++|..+.+++.+ .+ .+
T Consensus 100 ~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (563)
T PRK06710 100 IVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179 (563)
T ss_pred EEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhccccccccccc
Confidence 9999999877655433 00 00
Q ss_pred ---------c------------hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCC-CCCEEEEeCchh
Q psy9113 123 ---------S------------ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYK-PGDIYWCTADVG 179 (281)
Q Consensus 123 ---------~------------~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~-~~~~~l~~~pl~ 179 (281)
. ....++++ ++|||||||.||+|.++|+++............+.. .++++++.+|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 259 (563)
T PRK06710 180 ESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFF 259 (563)
T ss_pred ccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEEeCchH
Confidence 0 00124667 999999999999999999998752222222223333 356889999999
Q ss_pred hhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhh
Q psy9113 180 WITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLM 259 (281)
Q Consensus 180 h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~ 259 (281)
|.+|+...++.++..|+++++. + .++++.+++.++++++|.+. .+|.++..+++.... ...++++++
T Consensus 260 ~~~g~~~~~~~~l~~G~~~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~----~~~~~~~lr 326 (563)
T PRK06710 260 HVYGMTAVMNLSIMQGYKMVLI--P----KFDMKMVFEAIKKHKVTLFP---GAPTIYIALLNSPLL----KEYDISSIR 326 (563)
T ss_pred HHHHHHHHHHHHHHcCCeEEEc--C----CCCHHHHHHHHHHcCCeEEe---ccHHHHHHHHcCCcc----ccCChhhhh
Confidence 9999876777899999999998 5 57889999999999999966 455555555543322 223445565
Q ss_pred hccCCC
Q psy9113 260 WAGSLD 265 (281)
Q Consensus 260 ~~g~~g 265 (281)
.+...|
T Consensus 327 ~v~~gg 332 (563)
T PRK06710 327 ACISGS 332 (563)
T ss_pred heeeCC
Confidence 544333
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=213.23 Aligned_cols=199 Identities=12% Similarity=0.080 Sum_probs=163.6
Q ss_pred CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC----------
Q psy9113 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST---------- 118 (281)
Q Consensus 49 ~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~---------- 118 (281)
+++.+||+||.++++++|+.|. .|+++|++|+++++|+++++++++|+.++|++++|+++..+.+++..
T Consensus 5 ~~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~ 83 (414)
T PRK08308 5 NDEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGL 83 (414)
T ss_pred cCceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEE
Confidence 3579999999999999999985 68999999999999999999999999999999999999988775555
Q ss_pred c-CC-------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHH
Q psy9113 119 V-PA-------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVY 189 (281)
Q Consensus 119 ~-~~-------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~ 189 (281)
+ .. ......++++ ++|||||||.||+|+++|+++.. ........++...+++.+..+|++|.+|+...++
T Consensus 84 i~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~ 162 (414)
T PRK08308 84 LYGESDFTKLEAVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDR-EIEAYNEALNCEQDETPIVACPVTHSYGLICGVL 162 (414)
T ss_pred EecCcccccccCCCCCCCCceEEEECCCCCCCCcEEEEehHhHHH-HHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHH
Confidence 0 00 0112346778 99999999999999999999988 7776677778888999999999999999888899
Q ss_pred hhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccC
Q psy9113 190 GPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGS 263 (281)
Q Consensus 190 ~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~ 263 (281)
.++..|+++++. + ..+++.+++.++++++|.++ .+|.++..+.+.... ...++.+..+|+
T Consensus 163 ~~l~~G~~~~~~--~----~~~~~~~~~~l~~~~~t~~~---~~P~~~~~l~~~~~~-----~~~l~~~~~~G~ 222 (414)
T PRK08308 163 AALTRGSKPVII--T----NKNPKFALNILRNTPQHILY---AVPLMLHILGRLLPG-----TFQFHAVMTSGT 222 (414)
T ss_pred HHHHcCCEEEec--C----CCCHHHHHHHHHHhCCeEEE---cCHHHHHHHHhcCCc-----cccccEEEEccC
Confidence 999999999998 4 57899999999999999976 556666665544321 124555555554
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=220.70 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=169.2
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
++++.+.+.+.++.+|+++|+.+ .+..+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~a~~~----~~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 92 (545)
T PRK08162 17 PLTPLSFLERAAEVYPDRPAVIH----GDRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAG 92 (545)
T ss_pred cCCHHHHHHHHHHHCCCCeEEEE----CCeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhC
Confidence 57889999999999999999985 45789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC--------------------------cCCC--------c------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST--------------------------VPAN--------S------------------------ 123 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~--------------------------~~~~--------~------------------------ 123 (281)
++++|+++..+.+++.. .+.. .
T Consensus 93 ~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (545)
T PRK08162 93 AVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGDPD 172 (545)
T ss_pred cEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCCcc
Confidence 99999999987766655 0000 0
Q ss_pred -----hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 124 -----ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 124 -----~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
..+.++++ ++|||||||.||||+++|+++.. .........++..+++.+..+|++|.+|+...++.++. |+.
T Consensus 173 ~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~-~~~~~~~~~~~~~~~~~l~~~pl~h~~~~~~~~~~~~~-~g~ 250 (545)
T PRK08162 173 FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYL-NALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAAR-AGT 250 (545)
T ss_pred ccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHH-HHHHHHHhcCCCCCCeeEeccCcHhhhhHHHHHHHHHH-ccE
Confidence 00012567 99999999999999999998776 44444555677888999999999999987655555554 555
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
.++. . .++++.+++.++++++|++. .+|.++..+++..
T Consensus 251 ~~~~--~----~~~~~~~~~~l~~~~~t~~~---~~P~~~~~l~~~~ 288 (545)
T PRK08162 251 NVCL--R----KVDPKLIFDLIREHGVTHYC---GAPIVLSALINAP 288 (545)
T ss_pred EEEe--C----CCCHHHHHHHHHHcCCeEEE---echHHHHHHHhCc
Confidence 5555 2 67999999999999999977 6666667766543
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=217.16 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=168.4
Q ss_pred hhhhccC-CCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeE
Q psy9113 26 GHVLTPL-PGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104 (281)
Q Consensus 26 ~~~l~~~-a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~ 104 (281)
.+++.+. ++.+||++|+++ .++.+||.|+.++++++|+.|.+.|+++|++|+++++|+.+++++++||+++|+++
T Consensus 7 ~~~~~~~~~~~~p~~~a~~~----~~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~~~~G~~~ 82 (508)
T TIGR02262 7 EDLLDRNVVEGRGGKTAFID----DISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGAIRAGIVP 82 (508)
T ss_pred HHHHHHHHhcccCCceEEEe----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEE
Confidence 4556665 677999999984 56899999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCcCC--------------------------cCC-----------------------------Cchhhhcc
Q psy9113 105 SIVVSKCSGDDMST--------------------------VPA-----------------------------NSERERKL 129 (281)
Q Consensus 105 v~l~~~~~~~~~~~--------------------------~~~-----------------------------~~~~~~~~ 129 (281)
+|+++..+.+++.+ .+. ......++
T Consensus 83 v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (508)
T TIGR02262 83 VALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQADD 162 (508)
T ss_pred eeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcCCCccCCCCCCCCC
Confidence 99999877766654 000 00112356
Q ss_pred cc-eeeeecCCCCCceEEEechhHHHHHHHh-hhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcc
Q psy9113 130 KL-RKVVTGSTGKPKGVLHTTGGYLLYAATT-HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEI 207 (281)
Q Consensus 130 ~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~ 207 (281)
++ ++|||||||.||+|.++|+++.. .... ....++++++|+++..+|++|.+++...++.++..|+++++. +.
T Consensus 163 ~a~i~~TSGTTG~PK~v~~s~~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~--~~-- 237 (508)
T TIGR02262 163 PAFWLYSSGSTGMPKGVVHTHSNPYW-TAELYARNTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLM--GE-- 237 (508)
T ss_pred cEEEEeCCCCCCCCcEEEEechhHHH-HHHHHhHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEe--CC--
Confidence 77 99999999999999999999987 4443 445668889999999999999999877888899999999998 53
Q ss_pred ccccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 208 YWCTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 208 ~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
.+++..+++.++++++|.++ ..|.++..++..
T Consensus 238 -~~~~~~~~~~i~~~~~t~~~---~~P~~~~~~~~~ 269 (508)
T TIGR02262 238 -RPTPDAVFDRLRRHQPTIFY---GVPTLYAAMLAD 269 (508)
T ss_pred -CCCHHHHHHHHHHHCCcEEe---cchHHHHHHhcC
Confidence 46889999999999999966 334455554443
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=215.41 Aligned_cols=216 Identities=16% Similarity=0.119 Sum_probs=168.5
Q ss_pred chhhhh-ccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 24 TGGHVL-TPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 24 tl~~~l-~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
++.+.+ ..+++.+|+++|+.+ +++.+||+||.++++++|..|.+.|+++|++|+++++|+++++++++||+++|+
T Consensus 3 ~~~~~~~~~~a~~~~~~~a~~~----~~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~ 78 (458)
T PRK09029 3 IFSDWPWRHWAQVRPQAIALRL----NDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGA 78 (458)
T ss_pred hhhcChHHHHHHhCCCceeeec----CCcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCC
Confidence 444444 444788999999984 578999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------c---------------------CCCchhhhcccc-eeeeecCCCCCceEEEech
Q psy9113 103 VHSIVVSKCSGDDMST----------V---------------------PANSERERKLKL-RKVVTGSTGKPKGVLHTTG 150 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------~---------------------~~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~ 150 (281)
+++|+++..+.+++.. + ........++++ ++|||||||.||+|.++|+
T Consensus 79 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~ 158 (458)
T PRK09029 79 RVLPLNPQLPQPLLEELLPSLTLDFALVLEGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQ 158 (458)
T ss_pred EEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccchhhccccccccccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHH
Confidence 9999999998776554 0 000111235678 9999999999999999999
Q ss_pred hHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccC
Q psy9113 151 GYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLAN 230 (281)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~ 230 (281)
++.. ........++..++++++..+|++|.+|+. .++.+|..|+++++. +. ..+++.++ ++|.+.
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~l~~~p~~h~~g~~-~~~~~l~~G~~v~~~--~~-------~~~~~~i~--~~t~~~-- 223 (458)
T PRK09029 159 AHLA-SAEGVLSLMPFTAQDSWLLSLPLFHVSGQG-IVWRWLYAGATLVVR--DK-------QPLEQALA--GCTHAS-- 223 (458)
T ss_pred HHHH-HHHHHhhcCCCCccceEEEecCcHhhhhhH-HHHHHHhCCceEEeC--Ch-------HHHHHHHh--hceeee--
Confidence 9998 777777778889999999999999999974 667889999999988 41 33455553 677754
Q ss_pred CchhHHHHHHHHhhccccccccccchhhhhccCC
Q psy9113 231 GATSVIVSETLKMLNTNFFCILYTISSLMWAGSL 264 (281)
Q Consensus 231 ~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~ 264 (281)
..|.++..++..... ..+++.+..+|+.
T Consensus 224 -~~P~~~~~l~~~~~~-----~~~l~~i~~gG~~ 251 (458)
T PRK09029 224 -LVPTQLWRLLDNRSE-----PLSLKAVLLGGAA 251 (458)
T ss_pred -cChHHHHHHHhcccc-----CCcceEEEECCCC
Confidence 445555565544322 2245555555554
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-27 Score=219.56 Aligned_cols=227 Identities=16% Similarity=0.126 Sum_probs=173.8
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
.+++.+.|.+.++.+|+++|+.+ .++.+||.||.++++++|+.|.+. |+++||+|+++++|+++++++++||+++
T Consensus 23 ~~~~~~~l~~~~~~~p~~~a~~~----~~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~~ 98 (562)
T PRK12492 23 YKSVVEVFERSCKKFADRPAFSN----LGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRA 98 (562)
T ss_pred cCcHHHHHHHHHHhCCCCeeEec----CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 35899999999999999999984 457999999999999999999985 9999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC----------c-------------------------------------------------CC
Q psy9113 101 GAVHSIVVSKCSGDDMST----------V-------------------------------------------------PA 121 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~----------~-------------------------------------------------~~ 121 (281)
|++++++++..+.+++.+ + +.
T Consensus 99 G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (562)
T PRK12492 99 GLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMVPA 178 (562)
T ss_pred CeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccccc
Confidence 999999999876443332 0 00
Q ss_pred ----------------------Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhcc---------CCC-
Q psy9113 122 ----------------------NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFD---------YKP- 168 (281)
Q Consensus 122 ----------------------~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~---------~~~- 168 (281)
......++++ ++|||||||.||+|+++|+++.. ........+. +..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 257 (562)
T PRK12492 179 YHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVA-NMLQVRACLSQLGPDGQPLMKEG 257 (562)
T ss_pred cCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHH-HHHHHHHHHhcccccccccccCC
Confidence 0001224677 99999999999999999999876 4443333221 222
Q ss_pred CCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccc
Q psy9113 169 GDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNF 248 (281)
Q Consensus 169 ~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~ 248 (281)
+++++..+|++|.+|+...++..+..|.++++. +. ..++..+++.++++++|+++ ..|.++..+++....
T Consensus 258 ~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~--~~---~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~-- 327 (562)
T PRK12492 258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLI--TN---PRDIPGFIKELGKWRFSALL---GLNTLFVALMDHPGF-- 327 (562)
T ss_pred CeEEEEecchHHHHHHHHHHHHHhhcCceEEEe--cC---CcCHHHHHHHHHHhCCceee---CcHHHHHHHHhCcCc--
Confidence 357789999999999877778888899988777 31 45788999999999999966 455555666554332
Q ss_pred ccccccchhhhhccCCC
Q psy9113 249 FCILYTISSLMWAGSLD 265 (281)
Q Consensus 249 ~~~~~~L~sl~~~g~~g 265 (281)
...++++++.+...|
T Consensus 328 --~~~~~~~lr~~~~gG 342 (562)
T PRK12492 328 --KDLDFSALKLTNSGG 342 (562)
T ss_pred --ccccccceeEEEecc
Confidence 234455666554444
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-27 Score=219.46 Aligned_cols=228 Identities=19% Similarity=0.106 Sum_probs=175.2
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++.++|.+.++.+|+++|+++ .++.+||+||.+++.++|..|.+.|+++||+|+++++|+++++++++||+++|
T Consensus 22 ~~~i~~~l~~~a~~~p~~~a~~~----~~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~G 97 (557)
T PRK07059 22 YPSLADLLEESFRQYADRPAFIC----MGKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAG 97 (557)
T ss_pred CCCHHHHHHHHHHHcCCCceEEE----cCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 45899999999999999999985 46799999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------c----------------C-----------------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST----------V----------------P----------------------------------- 120 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------~----------------~----------------------------------- 120 (281)
++++|+++..+.+++.+ + .
T Consensus 98 ~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (557)
T PRK07059 98 YVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKMVPAWS 177 (557)
T ss_pred eEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEecccccccccccccccccccccccccccC
Confidence 99999999876554433 0 0
Q ss_pred ------------------C-Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhc----cC---CCCCEEE
Q psy9113 121 ------------------A-NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVF----DY---KPGDIYW 173 (281)
Q Consensus 121 ------------------~-~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~----~~---~~~~~~l 173 (281)
. ......++++ ++|||||||.||+|+++|.++.. ......... .. .....++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (557)
T PRK07059 178 LPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVA-NVLQMEAWLQPAFEKKPRPDQLNFV 256 (557)
T ss_pred CCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHH-HHHHHhhhhcccccccCCCCCcEEE
Confidence 0 0011235677 99999999999999999999876 433222111 11 1235678
Q ss_pred EeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccc
Q psy9113 174 CTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILY 253 (281)
Q Consensus 174 ~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 253 (281)
..+|++|.+++....+.++..|++.++. ++ ..++..+++.++++++|.+. .++.++..+++.... ...
T Consensus 257 ~~~pl~~~~~~~~~~~~~~~~g~~~~~~--~~---~~~~~~~~~~i~~~~vt~~~---~~p~~~~~l~~~~~~----~~~ 324 (557)
T PRK07059 257 CALPLYHIFALTVCGLLGMRTGGRNILI--PN---PRDIPGFIKELKKYQVHIFP---AVNTLYNALLNNPDF----DKL 324 (557)
T ss_pred EeCCcHHHHHHHHHHHHHHhhcceEEEe--cC---CcCHHHHHHHHHHhCCeeee---cCHHHHHHHHcCcCc----CcC
Confidence 8999999998777778889999998887 42 35788899999999999965 555556666654432 233
Q ss_pred cchhhhhccCCCc
Q psy9113 254 TISSLMWAGSLDI 266 (281)
Q Consensus 254 ~L~sl~~~g~~g~ 266 (281)
++++++.+...|.
T Consensus 325 ~~~~l~~~~~gg~ 337 (557)
T PRK07059 325 DFSKLIVANGGGM 337 (557)
T ss_pred CchhheEEEeccc
Confidence 5556665544443
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-27 Score=214.00 Aligned_cols=191 Identities=15% Similarity=0.075 Sum_probs=161.3
Q ss_pred CCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCC
Q psy9113 33 PGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCS 112 (281)
Q Consensus 33 a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~ 112 (281)
+++.++++|+++ +++.+||+||.++++++|..|+ ++|+|+++++|+++++++++||+++|++++|+++..+
T Consensus 10 ~~~~~~~~a~~~----~~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~ 80 (471)
T PRK07787 10 AAAADIADAVRI----GGRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSG 80 (471)
T ss_pred hcccCCceEEEe----CCcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCC
Confidence 346689999985 5789999999999999999985 5799999999999999999999999999999999988
Q ss_pred CCCcCC----------cC--------------------C--Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHh
Q psy9113 113 GDDMST----------VP--------------------A--NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT 159 (281)
Q Consensus 113 ~~~~~~----------~~--------------------~--~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~ 159 (281)
.+++.+ +. + ......++++ ++|||||||.||+|+++|+++.. ....
T Consensus 81 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~-~~~~ 159 (471)
T PRK07787 81 VAERRHILADSGAQAWLGPAPDDPAGLPHVPVRLHARSWHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAA-DLDA 159 (471)
T ss_pred hHHHHHHHHhcCCCEEEecCCcccccccceeeeccccccccCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHH-HHHH
Confidence 776655 00 0 0012235778 99999999999999999999988 6666
Q ss_pred hhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHH
Q psy9113 160 HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSE 239 (281)
Q Consensus 160 ~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ 239 (281)
....++..++++++..+|++|..|+...++.++..|+++++. + ..+++.+++.++ +++|++. .+|.++..
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~----~~~~~~~~~~i~-~~~t~~~---~~P~~~~~ 229 (471)
T PRK07787 160 LAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHT--G----RPTPEAYAQALS-EGGTLYF---GVPTVWSR 229 (471)
T ss_pred HHHhcCCCccceeEeccCCeeechhHHHHHHHHhcCCEEEec--C----CCCHHHHHHHHh-hCceEEE---cchHHHHH
Confidence 667778889999999999999999988899999999999988 4 578999999999 9999966 55555666
Q ss_pred HHHh
Q psy9113 240 TLKM 243 (281)
Q Consensus 240 ll~~ 243 (281)
+++.
T Consensus 230 l~~~ 233 (471)
T PRK07787 230 IAAD 233 (471)
T ss_pred HHhC
Confidence 6653
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=214.33 Aligned_cols=200 Identities=20% Similarity=0.228 Sum_probs=156.3
Q ss_pred ccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeec
Q psy9113 30 TPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS 109 (281)
Q Consensus 30 ~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~ 109 (281)
..+|+.+|+++|+.+. ++++.+||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|++++|+++
T Consensus 4 ~~~a~~~p~~~a~~~~--~~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~ 81 (501)
T PRK13390 4 GTHAQIAPDRPAVIVA--ETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINH 81 (501)
T ss_pred chhhhhCCCCcEEEec--CCCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecccc
Confidence 4566789999999853 34688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCC----------------------c----C--------------C-----C---chhhhcccc-eeeeecCCC
Q psy9113 110 KCSGDDMST----------------------V----P--------------A-----N---SERERKLKL-RKVVTGSTG 140 (281)
Q Consensus 110 ~~~~~~~~~----------------------~----~--------------~-----~---~~~~~~~~~-i~~TSGTTG 140 (281)
.++++++.+ . . + . ...+.++.+ ++|||||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 161 (501)
T PRK13390 82 HLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALAGAGPRLTEQPCGAVMLYSSGTTG 161 (501)
T ss_pred CCCHHHHHHHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcccccccHHHHhcccCCCCCCCcccEEEEeCCCCCC
Confidence 988766654 0 0 0 0 000012347 999999999
Q ss_pred CCceEEEe--chhHHHHHH----HhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccc
Q psy9113 141 KPKGVLHT--TGGYLLYAA----TTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADV 214 (281)
Q Consensus 141 ~PK~v~~s--~~~l~~~~~----~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~ 214 (281)
.||+|+++ |.++.. .. ......+++..+++++..+|++|.+++... ...+..|+++++. + .++++.
T Consensus 162 ~PKgV~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g~~~~~~--~----~~~~~~ 233 (501)
T PRK13390 162 FPKGIQPDLPGRDVDA-PGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWC-SMVHALGGTVVLA--K----RFDAQA 233 (501)
T ss_pred CCCEEEeecccccccc-chhhhHhhHHHHhCCCCCCeEEecccchhhhHHHHH-HHHHhcCceEEEc--C----CcCHHH
Confidence 99999964 444433 11 112334677889999999999999987543 4466789999888 4 578999
Q ss_pred cceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 215 GWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 215 ~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
+++.++++++|.+. ..|.++..+++
T Consensus 234 ~~~~i~~~~~t~~~---~~P~~~~~l~~ 258 (501)
T PRK13390 234 TLGHVERYRITVTQ---MVPTMFVRLLK 258 (501)
T ss_pred HHHHHHHcCCeEEE---ecHHHHHHHHh
Confidence 99999999999976 45555555554
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-27 Score=217.60 Aligned_cols=226 Identities=15% Similarity=0.064 Sum_probs=174.1
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLK-SKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
.++.++|.+.++.+|+++|+++ .++.+||+||.+++.++|+.|+ +.|+++|++|+++++|+++++++++||.++|
T Consensus 25 ~~~~~~l~~~~~~~~~~~a~~~----~~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~G 100 (560)
T PRK08751 25 RTVAEVFATSVAKFADRPAYHS----FGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAG 100 (560)
T ss_pred CcHHHHHHHHHHhCCCCceEEE----CCceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 3688999999999999999985 4679999999999999999997 6899999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC--------------------------cCCC---------------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST--------------------------VPAN--------------------------------- 122 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~--------------------------~~~~--------------------------------- 122 (281)
++++|++|.++.+++.+ .+..
T Consensus 101 ~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (560)
T PRK08751 101 LTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVKKLVPEY 180 (560)
T ss_pred eEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhhhcccccchhhhhhhhhhhcccccc
Confidence 99999999987665544 0000
Q ss_pred ----------------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhcc----CCC-CCEEEE
Q psy9113 123 ----------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFD----YKP-GDIYWC 174 (281)
Q Consensus 123 ----------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~----~~~-~~~~l~ 174 (281)
.....++++ ++|||||||.||+|.++|+++.. .........+ +.+ +++++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 259 (560)
T PRK08751 181 RINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVA-NMQQAHQWLAGTGKLEEGCEVVIT 259 (560)
T ss_pred CCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHH-HHHHHHHhhccccccCCCCceEEE
Confidence 000124567 99999999999999999999887 5444333332 333 357788
Q ss_pred eCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccccccccc
Q psy9113 175 TADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYT 254 (281)
Q Consensus 175 ~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 254 (281)
..|++|.+|+....+.++..|++.++. +. ..++..+++.++++++|.+. .+|.++..+++.... ...+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~---~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~----~~~~ 327 (560)
T PRK08751 260 ALPLYHIFALTANGLVFMKIGGCNHLI--SN---PRDMPGFVKELKKTRFTAFT---GVNTLFNGLLNTPGF----DQID 327 (560)
T ss_pred ecChHHHHHHHHhhhhHhhccceEEEe--cC---cCCHHHHHHHHHhcceeEec---ChHHHHHHHHcCcCc----CCcc
Confidence 899999999876667788888888777 32 46788999999999999965 455555665554332 2345
Q ss_pred chhhhhccCCC
Q psy9113 255 ISSLMWAGSLD 265 (281)
Q Consensus 255 L~sl~~~g~~g 265 (281)
+++++.+...|
T Consensus 328 l~~lr~v~~gG 338 (560)
T PRK08751 328 FSSLKMTLGGG 338 (560)
T ss_pred hhhheeeeeCC
Confidence 56666554444
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.4e-27 Score=232.31 Aligned_cols=205 Identities=17% Similarity=0.098 Sum_probs=163.5
Q ss_pred chhhhhccCCCCCCCCCccccC-CCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGN-DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~-~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
|+.+++.+.++++|+++|+... +.+..+.+||+|+.+++.++|+.|.++|+++||+|+++++|+++|+++++||+.+|+
T Consensus 428 Tl~dll~~~a~~~pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewvia~lA~~~~Ga 507 (1452)
T PTZ00297 428 SLGEMWERSVTRHSTFRCLGQTSESGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIVILEVACALYGF 507 (1452)
T ss_pred CHHHHHHHHHHHCCCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 8999999999999999998632 123457899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC---------------------------------cCC----C-----------------------
Q psy9113 103 VHSIVVSKCSGDDMST---------------------------------VPA----N----------------------- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~---------------------------------~~~----~----------------------- 122 (281)
++||+++. .+++.+ ... .
T Consensus 508 V~VPly~t--~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~ 585 (1452)
T PTZ00297 508 TTLPLVGK--GSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGR 585 (1452)
T ss_pred EEEeCCCC--HHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCc
Confidence 99999753 223333 000 0
Q ss_pred -------chhhhcccc-eee---eecCCCCCceEEEechhHHHHHHHhhhhh---ccCCCCCEEEEeCchhhhhhHhHHH
Q psy9113 123 -------SERERKLKL-RKV---VTGSTGKPKGVLHTTGGYLLYAATTHKYV---FDYKPGDIYWCTADVGWITGHTYVV 188 (281)
Q Consensus 123 -------~~~~~~~~~-i~~---TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~gl~~~~ 188 (281)
....+++.+ |+| ||||||.||||++||++++. +....... ....++|++++.+|++|+++.. .+
T Consensus 586 ~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla-~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~er~-~~ 663 (1452)
T PTZ00297 586 LCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLR-DISTLVMTGVLPSSFKKHLMVHFTPFAMLFNRV-FV 663 (1452)
T ss_pred ccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHH-HHHHHhhhccccCCCCCCEEEEechHHHHHHHH-HH
Confidence 001234666 775 99999999999999999998 66554432 1346789999999999999964 56
Q ss_pred HhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 189 YGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 189 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
+.+++.|+++... +++.+++.++++|||+++ .+|.++..+.+..
T Consensus 664 ~~~l~~G~~I~~~---------d~~~lledL~~~rPTv~~---~VPrv~ekI~~~i 707 (1452)
T PTZ00297 664 LGLFAHGSAVATV---------DAAHLQRAFVKFQPTILV---AAPSLFSTSRLQL 707 (1452)
T ss_pred HHHHHcCCEEEeC---------CHHHHHHHHHHHCCEEEE---ecHHHHHHHHHHH
Confidence 7889999998543 678999999999999976 5556666665554
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-27 Score=235.16 Aligned_cols=208 Identities=19% Similarity=0.156 Sum_probs=170.4
Q ss_pred cchhhhhccCCCCCC-CCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 23 ETGGHVLTPLPGCTP-MKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 23 ~tl~~~l~~~a~~~p-d~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
.++.+.+.+.++++| ++.++.+ .+++++||+|+.++++++|+.|++ |+++||+|+++++|+++++++++||+++|
T Consensus 631 ~~~~~~l~~~~~~~~~~~~ai~~---~~~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~G 706 (1140)
T PRK06814 631 RTLFEALIEAAKIHGFKKLAVED---PVNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAG 706 (1140)
T ss_pred CCHHHHHHHHHHHcCCCCeEeEC---CCCCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHCC
Confidence 456777778888876 4566654 246789999999999999999975 99999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------c------------C-------CC--------------------c---
Q psy9113 102 AVHSIVVSKCSGDDMST----------------V------------P-------AN--------------------S--- 123 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------~------------~-------~~--------------------~--- 123 (281)
++++|+++..+.+++.+ . + .+ +
T Consensus 707 ~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1140)
T PRK06814 707 RVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFPLVY 786 (1140)
T ss_pred CEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCCccc
Confidence 99999999887666554 0 0 00 0
Q ss_pred --hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEE
Q psy9113 124 --ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 124 --~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
....++++ ++|||||||.||||+++|+++.. .........+..++|++++.+|++|.+|+...++.++..|+++++
T Consensus 787 ~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~ 865 (1140)
T PRK06814 787 FCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLA-NRAQVAARIDFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFL 865 (1140)
T ss_pred cCCCCCCCcEEEEECCCccCCCcEEEecHHHHHH-HHHHHHHhhCCCCcCEEEEecchHHHHHHHHHHHHHHHcCCEEEE
Confidence 01235778 99999999999999999999988 777777778889999999999999999987788999999999999
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
. +. ..+.+.+.+.++++++|.++ .+|.++..+.+.
T Consensus 866 ~--~~---~~~~~~~~~~i~~~~~t~~~---~~p~~l~~l~~~ 900 (1140)
T PRK06814 866 Y--PS---PLHYRIIPELIYDTNATILF---GTDTFLNGYARY 900 (1140)
T ss_pred e--cC---cccHHHHHHHHHhcCCEEEE---ecHHHHHHHHhh
Confidence 8 42 34567788899999999977 556666655443
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=228.77 Aligned_cols=225 Identities=15% Similarity=0.097 Sum_probs=174.0
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
....|+.+++++.++++||++|+++ .++.+||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||++
T Consensus 444 ~~~~sl~~ll~~~a~~~pd~~Al~~----~~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~ 519 (994)
T PRK07868 444 HTRISLGRIIAEQARDAPKGEFLLF----DGRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSR 519 (994)
T ss_pred CCCccHHHHHHHHHHHCCCCeEEEe----CCceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 5667899999999999999999985 457899999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC-----------------------------cC-----------------C----Cc------
Q psy9113 100 IGAVHSIVVSKCSGDDMST-----------------------------VP-----------------A----NS------ 123 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~-----------------------------~~-----------------~----~~------ 123 (281)
+|++++|++|.. ++.+ .. . ..
T Consensus 520 aGav~vpl~p~~---~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (994)
T PRK07868 520 LGAVAVLMPPDT---DLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVELPG 596 (994)
T ss_pred cCCEEEEeCCch---hHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccccCCcchhhhhhhhcCcccccCCc
Confidence 999999999752 2222 00 0 00
Q ss_pred -----hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 124 -----ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 124 -----~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
....++++ |+|| ||||.||++.++|++... ........+++.++|++++.+|++|.+|+...++.++..|++
T Consensus 597 ~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~-~~~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~ 674 (994)
T PRK07868 597 WYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWAL-SAFGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSR 674 (994)
T ss_pred ccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHH-HHHhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceE
Confidence 00125667 9998 688888888888876654 333444556788899999999999999987666666777777
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++. + .++++.+++.|+++++|+++ .+|.++..+++.... ...++++++.+...|.
T Consensus 675 vvl~--~----~~~~~~~~~~I~~~~vT~~~---~~Ps~l~~L~~~~~~----~~~~~~slr~~~g~gl 730 (994)
T PRK07868 675 IALS--R----GLDPDRFVQEVRQYGVTVVS---YTWAMLREVVDDPAF----VLHGNHPVRLFIGSGM 730 (994)
T ss_pred EEec--C----CCCHHHHHHHHHHhCCcEEE---eHHHHHHHHHhCcCC----ccCCCCceEEEecCCC
Confidence 6666 4 57999999999999999977 666667776664322 2234556665544443
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-26 Score=211.37 Aligned_cols=202 Identities=20% Similarity=0.243 Sum_probs=160.6
Q ss_pred ccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeec
Q psy9113 30 TPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVS 109 (281)
Q Consensus 30 ~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~ 109 (281)
...++.+||++|+++. .+++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|++++++++
T Consensus 4 ~~~a~~~p~~~a~~~~--~~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~ 81 (511)
T PRK13391 4 GIHAQTTPDKPAVIMA--STGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNS 81 (511)
T ss_pred hhhHhhCCCceEEEec--CCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecccc
Confidence 3567789999998853 34678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCC--------------------------cC-------CC---------------------chhhhcccc-eee
Q psy9113 110 KCSGDDMST--------------------------VP-------AN---------------------SERERKLKL-RKV 134 (281)
Q Consensus 110 ~~~~~~~~~--------------------------~~-------~~---------------------~~~~~~~~~-i~~ 134 (281)
..+.+++.+ .+ .. .....++.+ ++|
T Consensus 82 ~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~ 161 (511)
T PRK13391 82 HLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPATPIADESLGTDMLY 161 (511)
T ss_pred ccCHHHHHHHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcCCCCCCCCCcccccEEEE
Confidence 887776655 00 00 000112346 999
Q ss_pred eecCCCCCceEEEe--chhHHHH--HHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccc
Q psy9113 135 VTGSTGKPKGVLHT--TGGYLLY--AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWC 210 (281)
Q Consensus 135 TSGTTG~PK~v~~s--~~~l~~~--~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~ 210 (281)
||||||.||+|.++ |.++... ........+++.++++++...|++|.+|+. ..+.++..|+++++. + .+
T Consensus 162 TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~~~-~~~~~~~~g~~~~~~--~----~~ 234 (511)
T PRK13391 162 SSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQR-AVMLVIRLGGTVIVM--E----HF 234 (511)
T ss_pred CCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHHHH-HHHHHHHcCceEEEC--C----CC
Confidence 99999999999965 5554320 223344556778889999999999999875 668899999999998 4 67
Q ss_pred cccccceeeeeeccceeccCCchhHHHHHHHHh
Q psy9113 211 TADVGWITGHTYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 211 ~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
+++.+++.++++++|++. .+|.++..++..
T Consensus 235 ~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~ 264 (511)
T PRK13391 235 DAEQYLALIEEYGVTHTQ---LVPTMFSRMLKL 264 (511)
T ss_pred CHHHHHHHHHHhCCeEEE---ehHHHHHHHHhC
Confidence 899999999999999976 555555555543
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=213.05 Aligned_cols=210 Identities=16% Similarity=0.124 Sum_probs=167.3
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
..++.+++++.++.+|+++|+.+ .++.+||+||.++++++|..|.+ .|+++|++|+++++|+++++++++||+++
T Consensus 22 ~~~l~~~l~~~a~~~p~~~a~~~----~~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 97 (560)
T PRK08974 22 YQSLVDMFEQAVARYADQPAFIN----MGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRA 97 (560)
T ss_pred cccHHHHHHHHHHhCCCCceEEE----CCccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 34799999999999999999985 46799999999999999999984 89999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC----------c--C------------------------------------------------
Q psy9113 101 GAVHSIVVSKCSGDDMST----------V--P------------------------------------------------ 120 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~----------~--~------------------------------------------------ 120 (281)
|++++|+++..+.+++.+ + +
T Consensus 98 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (560)
T PRK08974 98 GMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVPK 177 (560)
T ss_pred CcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhccccccc
Confidence 999999999876554433 0 0
Q ss_pred --CC-------------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhc---cCCCCCEEEEe
Q psy9113 121 --AN-------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVF---DYKPGDIYWCT 175 (281)
Q Consensus 121 --~~-------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~---~~~~~~~~l~~ 175 (281)
.+ .....++++ ++|||||||.||+|.++|.++.. ........+ ....++.++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 256 (560)
T PRK08974 178 YHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLA-NLEQAKAAYGPLLHPGKELVVTA 256 (560)
T ss_pred ccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHH-HHHHHHHhhccccCCCccEEEEe
Confidence 00 001235677 99999999999999999999887 443322222 23446788899
Q ss_pred CchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhh
Q psy9113 176 ADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKML 244 (281)
Q Consensus 176 ~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~ 244 (281)
+|++|.+|+....+.++..|+++++. .. ..++..+++.++++++|.+. .+|.++..+++..
T Consensus 257 ~p~~~~~~~~~~~~~~l~~g~~~~~~--~~---~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~ 317 (560)
T PRK08974 257 LPLYHIFALTVNCLLFIELGGQNLLI--TN---PRDIPGFVKELKKYPFTAIT---GVNTLFNALLNNE 317 (560)
T ss_pred CcHHHHHHHHHHHHHHhhcCCeEEEe--cC---ccCHHHHHHHHHhcCcceEc---CcHHHHHHHHhCc
Confidence 99999999877778888999988877 32 35778889999999999966 5555566666544
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-26 Score=186.85 Aligned_cols=176 Identities=22% Similarity=0.171 Sum_probs=141.0
Q ss_pred hccCCCCCCCCCccccC-CCC-CCeeeeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEE
Q psy9113 29 LTPLPGCTPMKPGAAGN-DPD-DYSRLTYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105 (281)
Q Consensus 29 l~~~a~~~pd~~a~~~~-~~~-~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v 105 (281)
|...++++|+++|+++. +.. +++++||+|+.++++++|+.|++ .|+++||+|+++++|+++++++++|++++|++++
T Consensus 2 ~~~~~~~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 2 LSPLLAADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhhhhCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 45667789999999753 222 45689999999999999999998 7999999999999999999999999999999999
Q ss_pred EeecCC-----CCC------------------------------C-cCC---cC-----C-Cc-hhhhcccc-eeeeecC
Q psy9113 106 IVVSKC-----SGD------------------------------D-MST---VP-----A-NS-ERERKLKL-RKVVTGS 138 (281)
Q Consensus 106 ~l~~~~-----~~~------------------------------~-~~~---~~-----~-~~-~~~~~~~~-i~~TSGT 138 (281)
|++..- ..+ . ... .. . +. ....+|++ ++||||+
T Consensus 82 p~n~s~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~ 161 (227)
T TIGR03089 82 LAGDPDADVVVTGPDRLAAAAGSGEVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW 161 (227)
T ss_pred eCCCCCCCEEEeCcchhhhcccCCceEEEeccccccCCCCCCCCcccchhhhhhccCCCCCCCCCCCCCcceeeeccccc
Confidence 987500 000 0 000 00 0 00 12336888 9999986
Q ss_pred CCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccccccee
Q psy9113 139 TGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWIT 218 (281)
Q Consensus 139 TG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~ 218 (281)
+|+++.. .. ...+++++|+++ .+|++|.+|+...++.+|..|+++++. + +|+++.+++.
T Consensus 162 ---------~~~~~~~-~~----~~~~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~v~~--~----rFd~~~~l~~ 220 (227)
T TIGR03089 162 ---------TGAELVA-AA----RAAGLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSLVLV--T----HPDPARLDQI 220 (227)
T ss_pred ---------cHHHHHH-HH----hhcCCCCCCeEE-ecCCCchHHHHHHHHHHhccCceEEEe--c----CCCHHHHHHH
Confidence 5666655 32 566788999999 999999999988999999999999999 5 8999999999
Q ss_pred eeeeccc
Q psy9113 219 GHTYVVY 225 (281)
Q Consensus 219 i~~~~vt 225 (281)
|++||+|
T Consensus 221 i~~~~vT 227 (227)
T TIGR03089 221 AETERVT 227 (227)
T ss_pred HHhhcCC
Confidence 9999987
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >KOG1175|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=204.19 Aligned_cols=230 Identities=41% Similarity=0.627 Sum_probs=184.7
Q ss_pred hccCCCC-CCCCCccccC--CCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEE
Q psy9113 29 LTPLPGC-TPMKPGAAGN--DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105 (281)
Q Consensus 29 l~~~a~~-~pd~~a~~~~--~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v 105 (281)
+.+..+. .+|.++.++. +.++...+||.++.+.+.++|+.|...|+++||+|++++|+.++++++++||.++|++.+
T Consensus 70 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~ 149 (626)
T KOG1175|consen 70 LDRHIKEKGGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHS 149 (626)
T ss_pred hhhhhhhcCCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEE
Confidence 3444333 4788887654 344455599999999999999999988999999999999999999999999999999999
Q ss_pred EeecCCCCCCcCC-------------------------------------------------------------------
Q psy9113 106 IVVSKCSGDDMST------------------------------------------------------------------- 118 (281)
Q Consensus 106 ~l~~~~~~~~~~~------------------------------------------------------------------- 118 (281)
++...++++++..
T Consensus 150 ~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~ 229 (626)
T KOG1175|consen 150 SVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRRNRDLFWSLELKKASP 229 (626)
T ss_pred EeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecccccccHHHHhhhcCC
Confidence 9999999887776
Q ss_pred cCCCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 119 VPANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 119 ~~~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.......+.+++. |+|||||||.||++.+++....-..+......++++++|+..+.....|+.|.++.++.+|.+|++
T Consensus 230 ~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~ 309 (626)
T KOG1175|consen 230 EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGAT 309 (626)
T ss_pred CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcE
Confidence 0001112236888 999999999999999999875554777788889999999999999999999999999999999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
+++. ++.+ +++..+++.+++|++|.++ +.|..++. +.++..... ..++.++|+.++++|..
T Consensus 310 ~vl~--~g~p--~~~~~~~~~v~k~~it~l~---t~pt~~r~-l~~~~~~~~-~~~~~~sLk~~~S~Gep 370 (626)
T KOG1175|consen 310 VVLY--EGPP--FDPGRIWKILDKYKVTVLY---TAPTAYRL-LRRLGQEDV-TSYSLKSLRTCGSVGEP 370 (626)
T ss_pred EEEE--cCCC--CChhhhhhhHhhcceEEEE---eccHHHHH-HHHhccccc-cccccceEEEEeecCcc
Confidence 9999 6544 4999999999999999976 55555443 344433332 55565677777777763
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=202.70 Aligned_cols=180 Identities=11% Similarity=0.064 Sum_probs=140.9
Q ss_pred eeeeHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC----------c
Q psy9113 51 SRLTYKKLLEEVCKCANVLKSKGV-QKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST----------V 119 (281)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~~~g~-~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~----------~ 119 (281)
--+.|+||.++++++|+.|++.|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.+ +
T Consensus 18 ~~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i 97 (452)
T PRK07445 18 IGYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIW 97 (452)
T ss_pred eecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEE
Confidence 357899999999999999999988 57999999999999999999999999999999999999998887 1
Q ss_pred CCC--------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhH
Q psy9113 120 PAN--------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGH 184 (281)
Q Consensus 120 ~~~--------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl 184 (281)
... .....++++ ++|||||||.||||++||+++.. ........++..+ ++.++.+|++|.+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~-~~~~~~~~~~~~~-~~~~~~~Pl~h~~g~ 175 (452)
T PRK07445 98 GLDQLKLSHPPPLPSQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTA-SVQGFQRYFQLQQ-VNSFCVLPLYHVSGL 175 (452)
T ss_pred ecCccccccCCCCCccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHH-HHHHHHHHhcCCC-CceEeccCchhhhhH
Confidence 000 011235667 99999999999999999999887 6665555566654 467889999999998
Q ss_pred hHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 185 TYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 185 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
..++.++..|+++++. +. .+.........+++++.++ .+|.++..+++
T Consensus 176 -~~~~~~l~~G~t~v~~--~~----~~~~~~~~~~~~~~~t~~~---~vP~~l~~l~~ 223 (452)
T PRK07445 176 -MQFMRSFLTGGKLVIL--PY----KRLKSGQELPPNPSDFFLS---LVPTQLQRLLQ 223 (452)
T ss_pred -HHHHHHHHcCCeEEEc--Ch----HhccchhhhhhhcCceEEE---ehHHHHHHHHh
Confidence 4778999999999998 41 1122212233467777765 55556666654
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=201.49 Aligned_cols=196 Identities=21% Similarity=0.222 Sum_probs=160.5
Q ss_pred eHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC---------------
Q psy9113 54 TYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST--------------- 118 (281)
Q Consensus 54 Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~--------------- 118 (281)
||+||.++++++|..|.+.|+++||+|+++++|+++++++++||+++|++++|+++..+.+++..
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 79999999999999999999999999999999999999999999999999999999987665554
Q ss_pred c---------------------CCCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeC
Q psy9113 119 V---------------------PANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTA 176 (281)
Q Consensus 119 ~---------------------~~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 176 (281)
. ........++++ ++|||||||.||+|.++|+++.. ........++++++|+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~-~~~~~~~~~~~~~~d~~~~~~ 159 (436)
T TIGR01923 81 LEEKDFQADSLDRIEAAGRYETSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYA-SAVGSKENLGFTEDDNWLLSL 159 (436)
T ss_pred ccccceeecchHhhhhcccccccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHH-HHHHHHhhcCCCCCceEEEcc
Confidence 0 000111235677 99999999999999999999988 777777788999999999999
Q ss_pred chhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccch
Q psy9113 177 DVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTIS 256 (281)
Q Consensus 177 pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~ 256 (281)
|++|.+|+ ..++.++..|+++++. + .+ ..+++.++++++|.+. ..|.++..+++.... ..+++
T Consensus 160 ~~~~~~~~-~~~~~~l~~g~~~~~~--~----~~--~~~~~~l~~~~~t~~~---~~P~~l~~l~~~~~~-----~~~l~ 222 (436)
T TIGR01923 160 PLYHISGL-SILFRWLIEGATLRIV--D----KF--NQLLEMIANERVTHIS---LVPTQLNRLLDEGGH-----NENLR 222 (436)
T ss_pred CcHhHHHH-HHHHHHHhcCceEEec--c----hH--HHHHHHHHHhCCeEEE---eHHHHHHHHHhCcCC-----CCceE
Confidence 99999998 4789999999999998 4 23 3889999999999966 555666666654322 14567
Q ss_pred hhhhccCCCcc
Q psy9113 257 SLMWAGSLDIR 267 (281)
Q Consensus 257 sl~~~g~~g~~ 267 (281)
.+..+|+.-..
T Consensus 223 ~~~~~G~~~~~ 233 (436)
T TIGR01923 223 KILLGGSAIPA 233 (436)
T ss_pred EEEECCCCCCH
Confidence 66666665443
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-24 Score=193.71 Aligned_cols=201 Identities=23% Similarity=0.237 Sum_probs=161.2
Q ss_pred eHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC--------------
Q psy9113 54 TYKKLLEEVCKCANVLKS-KGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST-------------- 118 (281)
Q Consensus 54 Ty~~l~~~~~~la~~L~~-~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~-------------- 118 (281)
||+||.+++.++|+.|.+ .|+++||+|+++++|++++++.++||+++|++++|+++..+.+++.+
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 799999999999999998 89999999999999999999999999999999999999888776655
Q ss_pred -----c---C------------------C----Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCC
Q psy9113 119 -----V---P------------------A----NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYK 167 (281)
Q Consensus 119 -----~---~------------------~----~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~ 167 (281)
. . . ......++++ ++|||||||.||+|.++|+++.. ........+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~-~~~~~~~~~~~~ 159 (408)
T TIGR01733 81 ALASRLAGLVLPIILVDPLELAALDDAPAPPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVN-LLAWLARRYGLD 159 (408)
T ss_pred chhhhccccCCceEEechhhhhhcccccccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHH-HHHHHHHhcCCC
Confidence 0 0 0 0001135677 99999999999999999999998 777777788888
Q ss_pred CCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccc
Q psy9113 168 PGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTN 247 (281)
Q Consensus 168 ~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~ 247 (281)
+++++++..|++|.+|+ ..++.++..|+++++. +.... ..++.+.+.++++++|.+. .+|.++..+++....
T Consensus 160 ~~~~~~~~~p~~~~~~~-~~~~~~l~~g~~~~~~--~~~~~-~~~~~~~~~~~~~~~t~l~---~~p~~~~~l~~~~~~- 231 (408)
T TIGR01733 160 PDDRVLQFASLSFDASV-EEIFGTLLAGATLVVP--PEDEE-RDAALLAALIAEHPVTVLN---LTPSLLALLAAALPP- 231 (408)
T ss_pred CCceEEEecCCccchhH-HHHHHHHhCCCEEEEc--Chhhc-cCHHHHHHHHHHcCceEEE---eCHHHHHHHHHhhhh-
Confidence 99999999999999987 5889999999999998 43221 1478899999999999976 666666666665441
Q ss_pred cccccccchhhhhccCCCc
Q psy9113 248 FFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 248 ~~~~~~~L~sl~~~g~~g~ 266 (281)
....|+.+..+|+.-.
T Consensus 232 ---~~~~l~~v~~~g~~~~ 247 (408)
T TIGR01733 232 ---ALASLRLVILGGEALT 247 (408)
T ss_pred ---cccCceEEEEeCccCC
Confidence 2334555555555433
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=197.72 Aligned_cols=207 Identities=20% Similarity=0.185 Sum_probs=156.8
Q ss_pred CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC---------
Q psy9113 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST--------- 118 (281)
Q Consensus 48 ~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~--------- 118 (281)
..++.+||+||.+++.++|+.|.+.|+++|++|+++++|+++++++++||+++|++++|+++..+.+++.+
T Consensus 7 ~~~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (502)
T PRK08276 7 PSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKV 86 (502)
T ss_pred CCCcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCE
Confidence 46789999999999999999999999999999999999999999999999999999999999876665544
Q ss_pred -----------------cC--CC-------------------------chhhhcccc-eeeeecCCCCCceEEEechhHH
Q psy9113 119 -----------------VP--AN-------------------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYL 153 (281)
Q Consensus 119 -----------------~~--~~-------------------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~ 153 (281)
.+ .. .....++.+ ++|||||||.||+|.++|.++.
T Consensus 87 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~~~~~~ 166 (502)
T PRK08276 87 LIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLD 166 (502)
T ss_pred EEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcCCCCCCCCCCcceEEEECCCCCCCCceEEEccCCcc
Confidence 00 00 001123457 9999999999999999988765
Q ss_pred HHH-----HHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceec
Q psy9113 154 LYA-----ATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPL 228 (281)
Q Consensus 154 ~~~-----~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~ 228 (281)
... ............++++++..|++|.+++. ..+.++..|+++++. + .++++.+++.++++++|++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~~~~g~~~~~~--~----~~~~~~~~~~i~~~~~t~~~ 239 (502)
T PRK08276 167 PDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLR-FGMSALALGGTVVVM--E----KFDAEEALALIERYRVTHSQ 239 (502)
T ss_pred hhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHH-HHHHHHhccceEEEc--C----CCCHHHHHHHHHHhCCeEEE
Confidence 311 11111122234678999999999999975 446799999999988 4 57899999999999999976
Q ss_pred cCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 229 ANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 229 ~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.+|.++..+++...... ..+++++++.+...|.
T Consensus 240 ---~~P~~~~~l~~~~~~~~--~~~~~~~lr~i~~~g~ 272 (502)
T PRK08276 240 ---LVPTMFVRMLKLPEEVR--ARYDVSSLRVAIHAAA 272 (502)
T ss_pred ---ehHHHHHHHHhCccccC--CCCCcccceEEEecCC
Confidence 55556666655432211 3356666765555444
|
|
| >KOG1180|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=185.72 Aligned_cols=216 Identities=16% Similarity=0.084 Sum_probs=169.8
Q ss_pred CCceecccccc-chhhhhccCCCCCCCCCccccC-----------C--------CCCCeeeeHHHHHHHHHHHHHHHHHC
Q psy9113 13 CSIVDTFWQTE-TGGHVLTPLPGCTPMKPGAAGN-----------D--------PDDYSRLTYKKLLEEVCKCANVLKSK 72 (281)
Q Consensus 13 ~~~~~~~~~~~-tl~~~l~~~a~~~pd~~a~~~~-----------~--------~~~~~~~Ty~~l~~~~~~la~~L~~~ 72 (281)
-++.+..|+.. |+.+++++.++++.++.++-.. + =++....||.|+.+++..+|.+|.+.
T Consensus 30 ~~L~~~~~~g~~Tl~~~~~~~~~k~g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~~l 109 (678)
T KOG1180|consen 30 DGLVSPPNPGASTLYELFEECVKKFGKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLVKL 109 (678)
T ss_pred CCccCCCCCCcccHHHHHHHHHHhcCCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHHHh
Confidence 34666666665 9999999999999999885311 1 13457899999999999999999999
Q ss_pred CCCCCCE-EEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC---------------------------------
Q psy9113 73 GVQKGDR-VAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST--------------------------------- 118 (281)
Q Consensus 73 g~~~g~~-V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~--------------------------------- 118 (281)
|++++++ ++++.+.+.+|+.+++||.+.+.++|.+...+..+.+.+
T Consensus 110 G~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~I 189 (678)
T KOG1180|consen 110 GLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHI 189 (678)
T ss_pred CCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEE
Confidence 9998777 999999999999999999999999999999999998888
Q ss_pred ---------------------------------------cCCCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHH
Q psy9113 119 ---------------------------------------VPANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAAT 158 (281)
Q Consensus 119 ---------------------------------------~~~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~ 158 (281)
++ +....++|.+ |+|||||||.||||+++|+|+++ ...
T Consensus 190 I~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~-~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA-~~~ 267 (678)
T KOG1180|consen 190 IYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIP-PHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVA-GVT 267 (678)
T ss_pred EEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCC-CCCCCCCceEEEEEcCCCCCCCceEEEecccHHh-hhh
Confidence 01 1112347888 99999999999999999999999 554
Q ss_pred hhh-hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccc-ccc---ccccceeeeeeccceeccCCch
Q psy9113 159 THK-YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIY-WCT---ADVGWITGHTYVVYGPLANGAT 233 (281)
Q Consensus 159 ~~~-~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~-~~~---~~~~~~~i~~~~vt~~~~~~~~ 233 (281)
... ....+.+.|+++.++|+.|++.+... +.++.-|+.+-.. +.... ..+ ...---.+...|+|.+ .++|
T Consensus 268 G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE-~~~ft~G~~iGY~--S~~TLtdts~ki~kg~kGD~~~lkPTiM--~~Vp 342 (678)
T KOG1180|consen 268 GVGENVPELGPKDRYIAYLPLAHILELTAE-LVCFTWGGRIGYS--SPLTLTDTSSKIKKGCKGDLTELKPTIM--AAVP 342 (678)
T ss_pred hhcccCcccCCCceEEEechHHHHHHHHHH-HHHHhhCCEeecC--CcceecccchhhccCCcCccccccchhh--hhhH
Confidence 444 34578999999999999999999766 8899999988776 21000 111 1222345678999994 4455
Q ss_pred hH
Q psy9113 234 SV 235 (281)
Q Consensus 234 ~~ 235 (281)
..
T Consensus 343 AV 344 (678)
T KOG1180|consen 343 AV 344 (678)
T ss_pred HH
Confidence 43
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=198.18 Aligned_cols=185 Identities=18% Similarity=0.182 Sum_probs=149.4
Q ss_pred CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC----------
Q psy9113 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST---------- 118 (281)
Q Consensus 49 ~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~---------- 118 (281)
.++.+||+||.++++++|+.|.+.|+++|++|+++++|++++++.++||+++|++++++++..+.+++.+
T Consensus 8 ~~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i 87 (509)
T PRK12406 8 GDRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVL 87 (509)
T ss_pred CCeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEE
Confidence 5689999999999999999999999999999999999999999999999999999999999887666654
Q ss_pred -------------cC-------C--C---------------------------------chhhhcccc-eeeeecCCCCC
Q psy9113 119 -------------VP-------A--N---------------------------------SERERKLKL-RKVVTGSTGKP 142 (281)
Q Consensus 119 -------------~~-------~--~---------------------------------~~~~~~~~~-i~~TSGTTG~P 142 (281)
.+ . . .....++++ ++|||||||.|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~P 167 (509)
T PRK12406 88 IAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHP 167 (509)
T ss_pred EEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcccCccCCCCCCCceEEEECCCCCCCC
Confidence 00 0 0 001235677 99999999999
Q ss_pred ceEEEechhHHHH--HHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeee
Q psy9113 143 KGVLHTTGGYLLY--AATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGH 220 (281)
Q Consensus 143 K~v~~s~~~l~~~--~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~ 220 (281)
|+|+++|.+.... ........+++.++++++...|++|..+.... +.++..|+++++. + ..+++.+++.++
T Consensus 168 K~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~--~----~~~~~~~~~~l~ 240 (509)
T PRK12406 168 KGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQ--P----RFDPEELLQLIE 240 (509)
T ss_pred ceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHH-HHHHhhheEEEEc--c----CCCHHHHHHHHH
Confidence 9999987654331 22334456778889999999999998887544 5678899999888 4 568999999999
Q ss_pred eeccceeccCCchhHHHHHHHHh
Q psy9113 221 TYVVYGPLANGATSVIVSETLKM 243 (281)
Q Consensus 221 ~~~vt~~~~~~~~~~~~~~ll~~ 243 (281)
++++|.++ ..|.++..++..
T Consensus 241 ~~~~t~~~---~~P~~~~~l~~~ 260 (509)
T PRK12406 241 RHRITHMH---MVPTMFIRLLKL 260 (509)
T ss_pred HcCCeEEE---ccHHHHHHHHhC
Confidence 99999966 555556666553
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-21 Score=177.70 Aligned_cols=170 Identities=22% Similarity=0.208 Sum_probs=127.9
Q ss_pred eCCcHHHHHHHHHHHHhcCeEEEeecCCCCCCcCC-----------c-CC----------------------------C-
Q psy9113 84 LPMVLEIVVTMLACARIGAVHSIVVSKCSGDDMST-----------V-PA----------------------------N- 122 (281)
Q Consensus 84 ~~n~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~-----------~-~~----------------------------~- 122 (281)
++|+++++++++||+++|++++|+++.++.+++.+ . .. .
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE 80 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence 58999999999999999999999999887776655 0 00 0
Q ss_pred --------------------c--------h-----hhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCC
Q psy9113 123 --------------------S--------E-----RERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKP 168 (281)
Q Consensus 123 --------------------~--------~-----~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~ 168 (281)
. . .+.++++ |+|||||||.||||++||+++.. ........+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~-~~~~~~~~~~~~~ 159 (499)
T PLN03051 81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLR-CASDGWAHMDIQP 159 (499)
T ss_pred ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHH-HHHHHHHhcCCCC
Confidence 0 0 0125677 99999999999999999999877 4444445567888
Q ss_pred CCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccc
Q psy9113 169 GDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNF 248 (281)
Q Consensus 169 ~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~ 248 (281)
+|++++.+|++|..|+ ..++.+|..|+++++. +. .++++.+++.|+++++|++. .+|.++..+++......
T Consensus 160 ~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~--~~---~~~~~~~~~~i~~~~vt~~~---~vP~~~~~l~~~~~~~~ 230 (499)
T PLN03051 160 GDVVCWPTNLGWMMGP-WLLYSAFLNGATLALY--GG---APLGRGFGKFVQDAGVTVLG---LVPSIVKAWRHTGAFAM 230 (499)
T ss_pred CCEEEEccCcceeeeh-HHHHHHHHcCCEEEec--CC---CCCcHHHHHHHHHhCCcEEE---eCHHHHHHHHhcCcccc
Confidence 9999999999999997 4788999999999998 42 35788999999999999976 55555666655332101
Q ss_pred ccccccchhhhhccCCC
Q psy9113 249 FCILYTISSLMWAGSLD 265 (281)
Q Consensus 249 ~~~~~~L~sl~~~g~~g 265 (281)
...++++++.+...|
T Consensus 231 --~~~~~~~Lr~i~~gG 245 (499)
T PLN03051 231 --EGLDWSKLRVFASTG 245 (499)
T ss_pred --ccCCchhheEEEecC
Confidence 234566666544433
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=179.34 Aligned_cols=236 Identities=19% Similarity=0.158 Sum_probs=188.3
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.++++.+.+.+...|+++|+.+ ....+||+++..+++++|..|.+.|+.+++.|+++.+.+.++++.++|++++|+
T Consensus 227 ~~i~~~f~~~a~~~p~~~a~~~----~~~~lty~el~~~a~~la~~l~~~g~~~~~~V~i~~~rs~~~i~~~l~ilkaG~ 302 (642)
T COG1020 227 LTIHLLFEEQAATTPDAVALVR----GGQQLTYAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGA 302 (642)
T ss_pred chHHHHHHHHHHhCCCceeEec----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCHHHHHHHHHHHhcCC
Confidence 5799999999999999999985 479999999999999999999999999999999999889999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------------------cC-CC--------c-------hhhhcccc-eeeeecCCCCCc
Q psy9113 103 VHSIVVSKCSGDDMST----------------------VP-AN--------S-------ERERKLKL-RKVVTGSTGKPK 143 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~----------------------~~-~~--------~-------~~~~~~~~-i~~TSGTTG~PK 143 (281)
.++|+++..+.+.+.+ .+ .. . ....++.+ ++|||||||+||
T Consensus 303 ~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pk 382 (642)
T COG1020 303 AYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPGLALDDALSEIPDTDPIPQALLGDALAYIIYTSGSTGQPK 382 (642)
T ss_pred eEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCccccccccccCCccCcccccCCCCCeEEEEEccCCCCCCC
Confidence 9999999998886665 00 00 0 01124566 999999999999
Q ss_pred eEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeeeec
Q psy9113 144 GVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYV 223 (281)
Q Consensus 144 ~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~ 223 (281)
||+.+|+++.+ ........++...+|+++...++.+.... ..++.++..|+++++. +.. ...++..+.+.+++++
T Consensus 383 gv~~~h~~~~~-~~~~~~~~~~~~~~d~~l~~~s~~fD~~~-~~~f~~l~~G~~l~~~--~~~-~~~~~~~l~~~~~~~~ 457 (642)
T COG1020 383 GVRIEHRALAN-LLNDAGARFGLDADDRVLALASLSFDASV-FEIFGALLEGARLVLA--PAL-LQVDPAALLELLEAQG 457 (642)
T ss_pred CceecCHHHHH-HHHHHHHhcCCCcccEEeecCCcccchhH-HHHHHHHhCCCEEEec--Ccc-ccCCHHHHHHHHHHcC
Confidence 99999999998 66666667899999999999999887765 6899999999999999 432 3678999999999999
Q ss_pred cceeccCCchhHHHHHHHHhhcccc-ccccccchhhhhccCCCcceee
Q psy9113 224 VYGPLANGATSVIVSETLKMLNTNF-FCILYTISSLMWAGSLDIRMWC 270 (281)
Q Consensus 224 vt~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~L~sl~~~g~~g~~~~~ 270 (281)
+|++. .+|.++..++....... ......++.+..+|+.-.....
T Consensus 458 vt~~~---~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~ 502 (642)
T COG1020 458 ITVLL---LVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALV 502 (642)
T ss_pred CEEEE---ecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHH
Confidence 99965 55555555555522211 1111236777777755444333
|
|
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=148.71 Aligned_cols=203 Identities=15% Similarity=0.111 Sum_probs=168.4
Q ss_pred cchhhhhccCCCCCCCCCccccC--CCCCCeeeeHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGN--DPDDYSRLTYKKLLEEVCKCANVLKSKG-VQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~--~~~~~~~~Ty~~l~~~~~~la~~L~~~g-~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
.++.|+|+..++++||.+|+... ++....++||++|..++.+++..|...+ +++||+|+++++++.|++++++||++
T Consensus 770 ~~ile~Lq~R~a~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cly 849 (1363)
T KOG3628|consen 770 LTILEILQWRAAKTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACLY 849 (1363)
T ss_pred HHHHHHHHHHhhcCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHHh
Confidence 58999999999999999998643 3456689999999999999999999774 89999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC------------------------------------------------cC-----------
Q psy9113 100 IGAVHSIVVSKCSGDDMST------------------------------------------------VP----------- 120 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~------------------------------------------------~~----------- 120 (281)
+|.+++|++|.-...-.+. ++
T Consensus 850 ~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~~~~~ 929 (1363)
T KOG3628|consen 850 LGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRKKNIK 929 (1363)
T ss_pred cCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhhhhhh
Confidence 9999999988654433222 00
Q ss_pred -----CCc-hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhc
Q psy9113 121 -----ANS-ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLA 193 (281)
Q Consensus 121 -----~~~-~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~ 193 (281)
.+. ......++ +-+.--++|.--++..+|.++++ .+........+.+..-++..++++-..|+....+...+
T Consensus 930 k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla-~Ck~iKe~~~l~~~rpl~~~~~~~sGlgf~~wcLlgVy 1008 (1363)
T KOG3628|consen 930 KLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLA-FCKIIKETCQLYKSRPLLGCSSPYSGLGFNHWCLLGVY 1008 (1363)
T ss_pred ccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHH-HHHHHHHHHccccCCceEEEecCccchhHHHHHHHHHH
Confidence 000 00113455 66666788999999999999999 88888888888888888888888888899999999999
Q ss_pred cCceEEEecCCCccccccccccceeeeeeccceec
Q psy9113 194 NGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPL 228 (281)
Q Consensus 194 ~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~ 228 (281)
.|.+.++. +......++..++..|++||+.-++
T Consensus 1009 sGh~T~Li--~p~~l~nnpsLll~~i~~~kvkDt~ 1041 (1363)
T KOG3628|consen 1009 SGHPTLLI--SPMDLENNPSLLLQIISQYKVKDTY 1041 (1363)
T ss_pred cCCceeec--CHHHhhcCHHHHHHHHhcccccccc
Confidence 99998888 5555778999999999999998866
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-13 Score=119.86 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=81.4
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCC--CCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCC
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKP--GDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~--~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~ 204 (281)
+..+ ++|||||||.||+|++||+++.. ........+++.. .+++++.+|++|.+|+.+.++.++..|+++++. +
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~--~ 171 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLS-EAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQL--A 171 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHH-HHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEec--C
Confidence 3455 89999999999999999999988 6665566666643 368999999999999878889999999999998 4
Q ss_pred CccccccccccceeeeeeccceeccCCchhHHHHHHHH
Q psy9113 205 GEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLK 242 (281)
Q Consensus 205 ~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~ 242 (281)
.+++..+++.++.+ |.++ .+|.++..+++
T Consensus 172 ----~~~~~~~l~~i~~~--t~~~---~~P~~l~~l~~ 200 (386)
T TIGR02372 172 ----AAPASGIMRHARPG--DLIV---GTPFIWEQLAD 200 (386)
T ss_pred ----CCChHHHHHhhccC--CEEE---ECcHHHHHHHh
Confidence 57788888888754 5544 55666666654
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-12 Score=114.50 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=74.1
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
.++++ ++|||||||.||+|+++|+++.. ........ +...++.+..+|++|.+|+. .++.++..|+++++...+
T Consensus 34 ~~d~a~il~TSGTTG~PKgv~~s~~~l~~-~~~~~~~~--~~~~~~~~~~~p~~~~~g~~-~~~~~l~~g~~~v~~~~~- 108 (358)
T PRK07824 34 DDDVALVVATSGTTGTPKGAMLTAAALTA-SADATHDR--LGGPGQWLLALPAHHIAGLQ-VLVRSVIAGSEPVELDVS- 108 (358)
T ss_pred CCCeEEEEeCCCCCCCCCEEEecHHHHHH-HHHHHHhc--cCCCCeEEEECChHHHHHHH-HHHHHHHcCCeEEecCcC-
Confidence 46788 99999999999999999999987 55443333 33567889999999999974 678899999998884112
Q ss_pred ccccccccccceeeeeeccce
Q psy9113 206 EIYWCTADVGWITGHTYVVYG 226 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~ 226 (281)
..+++..+++.+++++.+.
T Consensus 109 --~~~~~~~~~~~i~~~~~~~ 127 (358)
T PRK07824 109 --AGFDPTALPRAVAELGGGR 127 (358)
T ss_pred --CCcCHHHHHHHHHHhCCCc
Confidence 2578999999999998544
|
|
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-12 Score=121.45 Aligned_cols=211 Identities=19% Similarity=0.102 Sum_probs=154.6
Q ss_pred ccccc--chhhhhccCCCCCCCCCccccC----CCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHH
Q psy9113 19 FWQTE--TGGHVLTPLPGCTPMKPGAAGN----DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVV 92 (281)
Q Consensus 19 ~~~~~--tl~~~l~~~a~~~pd~~a~~~~----~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~ 92 (281)
.|... ++++.+++.+...|.+.+..+- ..+.-..+||++.+...+.+++.|...|...|+.|++++..+.++++
T Consensus 30 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v 109 (1032)
T KOG1178|consen 30 GFEQFMGTLEDSFRRELAEAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVV 109 (1032)
T ss_pred hhhhhhcchhhHHHHHHhhcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeee
Confidence 44444 7888899999999999886532 22345789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEeecCCC----CCCcCC----------------------------------c-------CCCc----
Q psy9113 93 TMLACARIGAVHSIVVSKCS----GDDMST----------------------------------V-------PANS---- 123 (281)
Q Consensus 93 ~~lA~~~~G~~~v~l~~~~~----~~~~~~----------------------------------~-------~~~~---- 123 (281)
..++.+++|..+++++|.++ ++.+.. . ....
T Consensus 110 ~v~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~sv~~~~~~f~~~~~~~~~r~ 189 (1032)
T KOG1178|consen 110 SVFAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKLSVETIADSFQMVLHNEDTRE 189 (1032)
T ss_pred eeeehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhccccccchhhccchhhhhhccCCCcc
Confidence 99999999999999999999 221111 0 0000
Q ss_pred --hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEE
Q psy9113 124 --ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 124 --~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
..-.+..+ +.||||+||.||+|.-+|..+.+ ........++...++++-.....+..- .+..+..+++.....++
T Consensus 190 ~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~-~fdw~~~~f~~t~s~~~~~~~~~~~~d-~i~~~~~~~L~~~~~l~ 267 (1032)
T KOG1178|consen 190 IRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLAN-AFDWMFTTFPPTGSDRFTFKTSVYFDD-TIQKFIGALLFNGNNLL 267 (1032)
T ss_pred eeeecccccceEeecccccccccccchhHHHHHh-hhhhccccCCcCccchhhhhheeeccc-chHHHHhhHhhcCceee
Confidence 00114566 88999999999999999999999 777777778888887753333332221 12344445555555444
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCch
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGAT 233 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~ 233 (281)
. |....+.++.++.+.+++|+++..+..++.
T Consensus 268 ~--p~~~~~~~~~~l~~~le~y~i~~~~~~~a~ 298 (1032)
T KOG1178|consen 268 V--PTATIKDTPGQLASTLERYGITVSHLLPAM 298 (1032)
T ss_pred c--ccccCccchhhHHHHHHhhhheeeeechhh
Confidence 4 222224447899999999999998855554
|
|
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-11 Score=107.81 Aligned_cols=130 Identities=17% Similarity=0.081 Sum_probs=89.3
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHh---hhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEec
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT---HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~ 202 (281)
.++.+ +++||||||.||+|.++|+++.. .... .....+..++|+++...++.+..+....++.++..|++++..
T Consensus 74 ~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~-~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~- 151 (422)
T TIGR02155 74 REQVVRIHASSGTTGKPTVVGYTQNDIDT-WSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI- 151 (422)
T ss_pred hHHcEEEEECCCCCCCCeEeccCHHHHHH-HHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec-
Confidence 45677 88999999999999999998876 3222 223357888999888776654333333456678889999877
Q ss_pred CCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccc-cccccchhhhhccCCCc
Q psy9113 203 LPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFF-CILYTISSLMWAGSLDI 266 (281)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~-~~~~~L~sl~~~g~~g~ 266 (281)
+ ..+++.+++.|+++++|+++ ..|+++..+.+....... ....+++.+..+|+...
T Consensus 152 -~----~~~~~~~~~~i~~~~~t~l~---~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~ 208 (422)
T TIGR02155 152 -S----GGQTEKQVQLIQDFKPDIIM---VTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWT 208 (422)
T ss_pred -C----CCCHHHHHHHHHHHCCCEEE---EcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCC
Confidence 4 34678999999999999966 445555566655443221 01235666666676655
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-10 Score=101.53 Aligned_cols=129 Identities=14% Similarity=0.083 Sum_probs=86.9
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEe
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIV 201 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~ 201 (281)
+.++++ +.+||||||.||+|.+||+++.. ....... ..+++++|+++...|..+..|.....+.++..|++++..
T Consensus 84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~-~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKR-YAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CHHHeEEEEeCCCCCCCcceeeecHHHHHH-HHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 345777 89999999999999999999876 3333332 247888999999988887666544456677888887654
Q ss_pred cCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccccc-ccccchhhhhccCCCc
Q psy9113 202 SLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFC-ILYTISSLMWAGSLDI 266 (281)
Q Consensus 202 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~L~sl~~~g~~g~ 266 (281)
. .....++.+++++++.++ +.|+.+ ..+.+.+...... ....++.+..+|++..
T Consensus 163 --~------~~~~~~~~i~~~~~t~l~--~~ps~l-l~La~~~~~~g~~~~~~~lr~ii~gGE~l~ 217 (445)
T TIGR03335 163 --G------KCTFPIRIIESYRPTGIV--ASVFKL-LRLARRMKAEGIDPAESSIRRLVVGGESFA 217 (445)
T ss_pred --C------chhHHHHHHHHhCCCEEE--ECHHHH-HHHHHHHHHcCCCcccCcceEEEEcCCCCC
Confidence 2 223457889999999954 444433 3444444332210 2245677777777655
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=4e-07 Score=87.38 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=150.6
Q ss_pred chhhhhccCCCCCCCCCccccC-CCCCCeeeeHHHHHHHHHHHHH-HHHHCCCCCCCEEEEEeCCc--HHHHHHHHHHHH
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGN-DPDDYSRLTYKKLLEEVCKCAN-VLKSKGVQKGDRVAIYLPMV--LEIVVTMLACAR 99 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~-~~~~~~~~Ty~~l~~~~~~la~-~L~~~g~~~g~~V~l~~~n~--~~~~~~~lA~~~ 99 (281)
.+..+++..-..++...|.++- ..+....+||..++.++.+.|+ .|.+.|+.++|+|.++...+ .++++..++|..
T Consensus 95 d~~avl~~~~nhs~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l 174 (1363)
T KOG3628|consen 95 DIIAVLRYRRNHSATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFL 174 (1363)
T ss_pred chHHHHHhhccCCCCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccc
Confidence 4555666555666777776543 2334789999999999999999 67778999999999999775 799999999999
Q ss_pred hcCeEEEeecCCCCCCcCC--------------------------------------cCCC--------chhhhcc-cc-
Q psy9113 100 IGAVHSIVVSKCSGDDMST--------------------------------------VPAN--------SERERKL-KL- 131 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~--------------------------------------~~~~--------~~~~~~~-~~- 131 (281)
.|.+++|+.+..+.+++.. ..+. .....+- ..
T Consensus 175 ~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w~t~~~k~~~~~~k~~~P~~~~~~~~ 254 (1363)
T KOG3628|consen 175 LGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWWKTNDFKGNYTKDKIKKPRMQLPYGY 254 (1363)
T ss_pred cceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhhhcccccceeehhhccCCceeeeeEE
Confidence 9999999988887777755 0000 0000011 34
Q ss_pred eeeeecCCCCCceEEEechhHHHHHHH--------------hh-----hhhccCCCCCEEEEeCchhhhhhHhHHHHhhh
Q psy9113 132 RKVVTGSTGKPKGVLHTTGGYLLYAAT--------------TH-----KYVFDYKPGDIYWCTADVGWITGHTYVVYGPL 192 (281)
Q Consensus 132 i~~TSGTTG~PK~v~~s~~~l~~~~~~--------------~~-----~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l 192 (281)
|-||++++|.--|+..+|. +...... .. ...++.+.+++++.........|++.+++.++
T Consensus 255 i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~~al 333 (1363)
T KOG3628|consen 255 IEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVLVAL 333 (1363)
T ss_pred EEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhhhhh
Confidence 8899999999999999987 3331110 11 22234556778888888888889999999999
Q ss_pred ccCceEEEecCCCccccccccccceeeeeeccceec
Q psy9113 193 ANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPL 228 (281)
Q Consensus 193 ~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~ 228 (281)
.+|.+.+.. |.+ ....|..+.+.+.+||.+.++
T Consensus 334 fsg~c~i~~--p~~-~l~~pG~~~~l~~k~R~~~~l 366 (1363)
T KOG3628|consen 334 FSGYCTIGC--PKE-VLKPPGLIANLITKYRATWSL 366 (1363)
T ss_pred hcCceeecC--chh-hcCCCcchhhhhccceeEEEe
Confidence 999999999 533 357788999999999999854
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.8e-05 Score=70.58 Aligned_cols=135 Identities=14% Similarity=-0.004 Sum_probs=86.1
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh--hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCC
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY--VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~--~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~ 204 (281)
++.. +-.||||||+|+-+.+++..+..+....... ..+...+|++.......-..|-....+.+-..|++++-. .
T Consensus 90 ~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~--~ 167 (438)
T COG1541 90 EEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI--S 167 (438)
T ss_pred cceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc--C
Confidence 4555 8899999999999999999877733322222 256677777655544321111112234444467766666 2
Q ss_pred CccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccc-ccccccchhhhhccCCCcceeeh
Q psy9113 205 GEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNF-FCILYTISSLMWAGSLDIRMWCM 271 (281)
Q Consensus 205 ~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~L~sl~~~g~~g~~~~~~ 271 (281)
..+.+.-++.++.+++|++. ++|++...+.+.+.... ......|+.+.+++|+....+.+
T Consensus 168 ----~g~~~~~~~l~~df~~tvI~---~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~ 228 (438)
T COG1541 168 ----GGNTERQLELMKDFKPTVIA---ATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRK 228 (438)
T ss_pred ----CccHHHHHHHHHhcCCcEEE---EChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHH
Confidence 35778888999999999977 55555556666655542 12556677777777777644433
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.015 Score=52.85 Aligned_cols=126 Identities=7% Similarity=-0.091 Sum_probs=73.1
Q ss_pred eeeeecCCCCCceEEEechhHHHHHHHhhhhh--ccCCCCCEEEEe--CchhhhhhHhHHHHhhhccCce-EEEecCCCc
Q psy9113 132 RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV--FDYKPGDIYWCT--ADVGWITGHTYVVYGPLANGAT-SVIVSLPGE 206 (281)
Q Consensus 132 i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~--~pl~h~~gl~~~~~~~l~~G~~-~v~~~~~~~ 206 (281)
+..||||||.|-.+..+......+.+...... .+...++++... .+. +.+ ..+.+... +-.. +
T Consensus 104 v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~ly-------~~~~~~~~~~~~~--~-- 171 (430)
T TIGR02304 104 VGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-NLY-------QSVNNRWISLDFF--D-- 171 (430)
T ss_pred EEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-hHH-------HHHHhccceeeec--C--
Confidence 67899999999999999886655333222222 244454544333 222 212 11111111 1222 2
Q ss_pred cccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc---ceeehhhcc
Q psy9113 207 IYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI---RMWCMVLWP 275 (281)
Q Consensus 207 ~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~---~~~~~~l~~ 275 (281)
+..+.+..++.|++++++++. .+|+.+..+.+....... ...++.+..+||... |...+..|.
T Consensus 172 -l~~~~~~~l~~L~~~~P~~L~---g~pS~l~~LA~~~~~~~l--~~~~k~ii~~~E~l~~~~r~~Ie~~fg 237 (430)
T TIGR02304 172 -LLAPFQAHIKRLNQRKPSIIV---APPSVLRALALEVMEGEL--TIKPKKVISVAEVLEPQDRELIRNVFK 237 (430)
T ss_pred -CCcCHHHHHHHHHHhCCCEEE---EcHHHHHHHHHHHHhcCC--CCCceEEEEccCCCCHHHHHHHHHHhC
Confidence 235678899999999999977 556656666665544332 246777777887666 334444554
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=83.05 E-value=3.5 Score=37.51 Aligned_cols=59 Identities=25% Similarity=0.121 Sum_probs=50.7
Q ss_pred eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCc--HHHHHHHHHHHHhcCeEEEeec
Q psy9113 51 SRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMV--LEIVVTMLACARIGAVHSIVVS 109 (281)
Q Consensus 51 ~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~--~~~~~~~lA~~~~G~~~v~l~~ 109 (281)
-.+|..|...++..+|+.|...|..+||+|..+..-+ ..-.-..+|+.++|+.++|+.+
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~ 168 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISG 168 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCC
Confidence 4689999999999999999999999999999887722 1226678899999999999987
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 281 | ||||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 2e-27 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 2e-27 | ||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 2e-27 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 2e-27 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 2e-27 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 2e-27 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 2e-27 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 2e-24 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 5e-06 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 7e-06 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-04 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 4e-04 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 4e-04 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 4e-04 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 4e-04 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 6e-04 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 6e-04 |
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 168 bits (429), Expect = 3e-48
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTG PKGV H+T GYLL A T +Y FD D+++ D+GWITGHTYVVYGPL G
Sbjct: 272 GSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGC 331
Query: 197 TSVI 200
+++
Sbjct: 332 ATLV 335
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-32
Identities = 37/65 (56%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLK-SKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
G++P +TYK+LLEEVC+ A VL S GV+KGD VA+Y+PMV E ++T+LA +RIGA
Sbjct: 105 GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 164
Query: 103 VHSIV 107
+HS+V
Sbjct: 165 IHSVV 169
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-22
Identities = 26/44 (59%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPG-CTPMKPGAA 43
W+WY IG + IVDT+WQTE+G H++TPL G TPMKPG+A
Sbjct: 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSA 444
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 5e-48
Identities = 53/64 (82%), Positives = 61/64 (95%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
GSTGKPKGVLHTTGGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA GA
Sbjct: 266 GSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGA 325
Query: 197 TSVI 200
T+++
Sbjct: 326 TTLM 329
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 8e-34
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
G+D ++Y++L +VC+ AN L G++KGD VAIY+PMV E V MLACARIGAV
Sbjct: 99 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 158
Query: 104 HSIV 107
HS++
Sbjct: 159 HSVI 162
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 2e-23
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAA 43
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 395 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSA 437
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 1e-47
Identities = 38/220 (17%), Positives = 60/220 (27%), Gaps = 65/220 (29%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
+D + T+K L K AN G+ KGD V + L + ML ++GA+
Sbjct: 79 DDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIA 138
Query: 105 S---------------------IVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPK 143
++V D V + L+K G +
Sbjct: 139 VPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVG-GDVLE 197
Query: 144 GVLH----------------------------------TTG---------GYLLYAATTH 160
G + T G Y L T
Sbjct: 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTA 257
Query: 161 KYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVI 200
KY + + +++ AD GW +YG G +
Sbjct: 258 KYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
+ + G +++ F QTET + P KPG+ G
Sbjct: 358 FNRFLEFTG---IKLMEGFGQTET-VVTIATFPW-MEPKPGSIG 396
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 7e-44
Identities = 45/220 (20%), Positives = 72/220 (32%), Gaps = 63/220 (28%)
Query: 45 NDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
N +++L E + ANVL G+Q+GDRVA+ LP V E + +L C R G +
Sbjct: 66 NGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLI 125
Query: 104 HS---------------------IVVSKCSGDDMSTVPANSERERKLKLRKVVTG----- 137
+V + + V + L+++ +V+
Sbjct: 126 FMPGTIQMKSTDILYRLQMSKAKAIV--AGDEVIQEVDTVASECPSLRIKLLVSEKSCDG 183
Query: 138 ---------------------------------STGKPKGVLHTTGGYLLYAATTHKYVF 164
++G PK H+ L A
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD-AGWT 242
Query: 165 DYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204
+ DI W +D GWI + P A GA + + LP
Sbjct: 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP 282
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
+ + G I +++ QTETG + +KPG G
Sbjct: 339 LENWRAQTG---LDIRESYGQTETGLTCMVSK--TMKIKPGYMG 377
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 9e-25
Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 64/212 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-------- 103
TY +L E + A+ L++ GV +R+ + + + + V L G V
Sbjct: 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLL 107
Query: 104 ----------HS---IVVSKCSGDDMSTVPANSERERKLKLRKVVTGSTGKPKGVLH--- 147
HS V+ SG + V E + +V+ +
Sbjct: 108 TPADYVYMLTHSHARAVI--ASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFE 165
Query: 148 ----------------------------TTG---------GYLLY-AATTHKYVFDYKPG 169
+TG L + A K +
Sbjct: 166 ELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAEN 225
Query: 170 DIYWCTADVGWITGHTYVVYGPLANGATSVIV 201
D+ + A + + G + PL+ GAT++++
Sbjct: 226 DVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
P RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV
Sbjct: 23 VPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 3e-14
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+++Y +L+ + ANVL ++G+Q GDRVA +E +V LA R G V
Sbjct: 24 AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 5e-14
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
R+TY ++ +CA+VL + G+ KGDRVA+ +P +E A++GAV
Sbjct: 43 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVA 95
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+TG PKGV+HT + AA++ D + D + + T V G
Sbjct: 180 GTTGHPKGVVHTHES-VHSAASSWASTIDVRYRDRLLLPLPMFHVAALT-TVIFSAMRGV 237
Query: 197 TSVIV 201
T + +
Sbjct: 238 TLISM 242
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 8e-14
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH 104
RLT++ L + A+ L GV GDRVAI E++ + A A IGA+
Sbjct: 31 RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAIL 83
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGA 196
G+P+G L + G LL A ++ + D+ + +TG ++ G
Sbjct: 170 AVGGRPRGALISQGN-LLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLG-LMLTLQQAGG 227
Query: 197 TSVIV 201
SVI
Sbjct: 228 ASVIA 232
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 2e-13
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+L+Y +L A L KG+ KGD + LP V E + A + G V
Sbjct: 55 QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 32/218 (14%), Positives = 59/218 (27%), Gaps = 63/218 (28%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI------- 100
D +L+Y++L + A L+ +G++ G+ + L V E+ +T A ++
Sbjct: 46 DGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLA 105
Query: 101 ----------------GAVHSIVVSKCSGDDMSTVPANSERERKLKLRKVVT-------- 136
I + + N+ +R V
Sbjct: 106 LFSHQRSELNAYASQIEPALLIADRQHALFSGDDF-LNTFVTEHSSIRVVQLLNDSGEHN 164
Query: 137 -----------------------------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYK 167
G+TG PK + T Y Y+ + +
Sbjct: 165 LQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDY-YYSVRRSVEICQFT 223
Query: 168 PGDIYWCTADVGWITGHTYV-VYGPLANGATSVIVSLP 204
Y C + G G T V+ + P
Sbjct: 224 QQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADP 261
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 4e-13
Identities = 43/251 (17%), Positives = 71/251 (28%), Gaps = 77/251 (30%)
Query: 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPD------DYSRLTYKKLLEEVCKCANVLKSK 72
W ET G +L A D + +Y++L + A +
Sbjct: 21 CWAGETFGDLLR----------DRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKL 70
Query: 73 GVQKGDRVAIYLPMVLEIVVTMLACARI-----------------------GAVHSIVVS 109
G+Q+ DRV + LP + E + A R+ A I+
Sbjct: 71 GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPD 130
Query: 110 KCSGDDMSTVPANSERERKLKLRKVVT--------------------------------- 136
SG D ++ A + + L+ ++
Sbjct: 131 AYSGFDYRSL-ARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQL 189
Query: 137 --GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITG-HTYVVYGPLA 193
GSTG K + T Y +Y+ V +Y + + V G L
Sbjct: 190 SGGSTGLSKLIPRTHDDY-IYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248
Query: 194 NGATSVIVSLP 204
G V+ P
Sbjct: 249 AGGRVVLSPSP 259
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 5e-13
Identities = 28/195 (14%), Positives = 52/195 (26%), Gaps = 51/195 (26%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVH--- 104
LTY +L A + RVA++ +E V ++A G
Sbjct: 44 FGERSLTYAELAAAAGATAG-----RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98
Query: 105 ------------------SIVVSKCSGDDMSTVPANSERERKLKLRKVVTGS-------- 138
S+V+ + +P ++ + G+
Sbjct: 99 NPKSGDKELAHILSDSAPSLVL----APPDAELPPALGALERVDVDVRARGAVPEDGADD 154
Query: 139 ------------TGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY 186
TG PKG + L + + D+ + + G
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRA-LATTLDALADAWQWTGEDVLVQGLPLFHVHGLVL 213
Query: 187 VVYGPLANGATSVIV 201
+ GPL G + +
Sbjct: 214 GILGPLRRGGSVRHL 228
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ + ++ E K A+ + KGV+KG+ V + +P ++ V+T+ A R+ A
Sbjct: 52 SMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAAT 103
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-12
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+TY + E + A +K G+ R+ + L+ + +L IG
Sbjct: 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVA 101
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 6e-12
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+Y + LE+ C L++ G+ R+A+ E + ++A IG
Sbjct: 52 DYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-11
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
TY+ L E A L + RV +Y+ ++ ++ + AC
Sbjct: 26 SYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIE 74
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-11
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ + TY + + A+ L G+Q+GD + ++LP E V+ L + GA+
Sbjct: 43 NGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 4e-11
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 13/76 (17%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIVVSKC 111
TY + + A GV + D V + LP E V++ LA + GA
Sbjct: 88 VYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT-------- 139
Query: 112 SGDDMSTV-PANSERE 126
+ P + E
Sbjct: 140 ----ATAANPFFTPAE 151
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-09
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103
+ + +TY++L + A L+++G + GDRV + L ++ L C G +
Sbjct: 34 NKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 37/221 (16%), Positives = 56/221 (25%), Gaps = 69/221 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC------ 97
+ LT+ +L A L G GDRV I P LE VV L
Sbjct: 50 QDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRI 108
Query: 98 -------------ARIGAV-----HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT--- 136
R +V ++ + + V + R ++
Sbjct: 109 AVPLSVPQGGVTDERSDSVLSDSSPVAIL--TTSSAVDDVVQHVARRPGESPPSIIEVDL 166
Query: 137 --------------------------GSTGKPKGVLHT-----TGGYLLYAATTHKYVFD 165
GST P GV+ + L +
Sbjct: 167 LDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGI 226
Query: 166 YKPGDIY--W--CTADVGWITGHTYVVYGPLANGATSVIVS 202
P W D+G + G P+ G +V+ S
Sbjct: 227 PPPNSALVSWLPFYHDMGLVIGIC----APILGGYPAVLTS 263
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 35/201 (17%), Positives = 61/201 (30%), Gaps = 60/201 (29%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
L+Y++L EE + A L+ G KG VA+Y LE+V+
Sbjct: 489 TLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKL 548
Query: 94 -------MLACARIGAV--HSIVVSKCSGDDMSTVPANSERERKLK-----LRKVVT--- 136
MLA + + H + + + + + + + + +
Sbjct: 549 PEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPND 608
Query: 137 --------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV- 187
G+TGKPKG + T F D +++ Y
Sbjct: 609 PAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFS--DQDT--------FLSVSNYAF 658
Query: 188 ------VYGPLANGATSVIVS 202
Y + N A +I
Sbjct: 659 DAFTFDFYASMLNAARLIIAD 679
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 49 DYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV-HSI 106
+ R TY ++ + + L++ GV GDRVA + A +GAV H+
Sbjct: 44 EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 27/195 (13%), Positives = 49/195 (25%), Gaps = 56/195 (28%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
+ Y++LL+ + ++ L Q G + +Y E +
Sbjct: 52 SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLYIDLKQ 111
Query: 94 -------MLACARIGAV-----HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT----- 136
+ + + + +PA R
Sbjct: 112 PAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASV----ARPCFAADQIA 167
Query: 137 ------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGD-IYWCTA---DVGWITGHTY 186
G+TG+PK + T G F P + D T
Sbjct: 168 YINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFA--PQMRFLVNSPLSFDAA-----TL 220
Query: 187 VVYGPLANGATSVIV 201
++G L NG V+
Sbjct: 221 EIWGALLNGGCCVLN 235
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-05
Identities = 28/200 (14%), Positives = 52/200 (26%), Gaps = 57/200 (28%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
R TY +L + A + S + V ++ +++ T
Sbjct: 29 RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPVDVHS 88
Query: 94 -------MLACARIGAV-----HSIVVSKCSGDDMSTVPANSERERKLKLRKVVT----- 136
++ A+ + + + S +S + + E + V
Sbjct: 89 APERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKGDDNY 148
Query: 137 ------GSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV-- 187
G+TG+PKGV + L FD + Y
Sbjct: 149 YIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ--------MLAQPPYSFD 200
Query: 188 -----VYGPLANGATSVIVS 202
LA G T +
Sbjct: 201 LSVMYWAPTLALGGTLFALP 220
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 4e-05
Identities = 27/202 (13%), Positives = 55/202 (27%), Gaps = 61/202 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
++TYK+L E+ A+ + S+ + +Y M E+++
Sbjct: 26 KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSI 85
Query: 94 -------MLACARIGAV---HSIVVSKCSGD----DMSTVPANSERERKLKLRKVVT--- 136
+ + + ++ V+ D + + V
Sbjct: 86 PADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDE 145
Query: 137 --------GSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187
GSTG PKGV T + + G + ++ +
Sbjct: 146 NFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQ--TGQV--------FLNQAPFS 195
Query: 188 -------VYGPLANGATSVIVS 202
+Y L G T +
Sbjct: 196 FDLSVMDIYPSLVTGGTLWAID 217
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 28/215 (13%), Positives = 49/215 (22%), Gaps = 55/215 (25%)
Query: 41 GAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------- 93
G G+ TYKKL E + AN++ + G +A+ L L
Sbjct: 44 GFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKS 102
Query: 94 ------------------MLACARIGAV--HSIVVSKCSG--------DDMSTVPANSER 125
+L +R + N
Sbjct: 103 GNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLST 162
Query: 126 ERKLKLRKVVT-----------GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWC 174
+ + GSTG PKGV + L + +
Sbjct: 163 QDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHN-LSSFSDAWGKLIGNVAPKSLEL 221
Query: 175 TADVGWITGHTYV-------VYGPLANGATSVIVS 202
++ + ++ G +V
Sbjct: 222 GGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGE 256
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 7e-04
Identities = 26/202 (12%), Positives = 52/202 (25%), Gaps = 61/202 (30%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVT------------------ 93
+LTY +L + + A + KG+ K V I + +++ +
Sbjct: 64 QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEY 123
Query: 94 -------MLACARIGAV--HSIVVSKCSGDDMSTV-----PANSERERKLKLRKVVT--- 136
+L ++ + +V + + L
Sbjct: 124 PKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTD 183
Query: 137 --------GSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187
G+TG PKG + G L + D +
Sbjct: 184 LAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVT--EKDR--------IGQFASIS 233
Query: 188 -------VYGPLANGATSVIVS 202
++ L GA+ I+
Sbjct: 234 FDASVWEMFMALLTGASLYIIL 255
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 39.4 bits (93), Expect = 9e-04
Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 60/201 (29%)
Query: 52 RLTYKKLLEEVCKCANVLKSKGVQKGD-RVAIYLPMVLEIVVT----------------- 93
LTY++L E+ + A ++ + + + +Y M ++V+
Sbjct: 26 SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLS 85
Query: 94 --------MLACARIGAV--HSIVVSKCSGDDMSTVPANSE---RERKLKLRKVVT---- 136
++ + + + + G + TV A + + V
Sbjct: 86 IPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHET 145
Query: 137 -------GSTGKPKGVLHTTGGYL-LYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV- 187
GSTG PKGV + + G I ++ +
Sbjct: 146 FYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVS--GGKI--------FLNQAPFSF 195
Query: 188 ------VYGPLANGATSVIVS 202
+Y L +G T V+
Sbjct: 196 DLSVMDLYPCLQSGGTLHCVT 216
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 99.98 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 99.97 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 99.97 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 99.75 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 99.57 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.52 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.52 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 99.51 |
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=282.79 Aligned_cols=235 Identities=17% Similarity=0.120 Sum_probs=195.8
Q ss_pred eccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 17 DTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 17 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
.++|.++|+.++|++.++++||++|+++ .++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus 24 ~~~~~~~tl~~~l~~~a~~~p~~~Al~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 24 KGYWIDQPLTRILTVGVQSHPHSLAIIC----GERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp TTSCCCCCTTHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCCCceEEEc----CCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 4689999999999999999999999995 578999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC---------------c-------------------------CC---------------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST---------------V-------------------------PA--------------- 121 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~---------------~-------------------------~~--------------- 121 (281)
|+++|++++|+++.++.+++.+ . ..
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPA 179 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCC
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccc
Confidence 9999999999999998776655 0 00
Q ss_pred -----Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhH-HHHhhhcc
Q psy9113 122 -----NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY-VVYGPLAN 194 (281)
Q Consensus 122 -----~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~-~~~~~l~~ 194 (281)
......++++ ++|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+++.. .++.++..
T Consensus 180 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~ 258 (544)
T 3o83_A 180 ETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDY-SVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHA 258 (544)
T ss_dssp SSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred ccccccccCCccceEEEEECCCcccCCceEEechHHHHH-HHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHc
Confidence 0112236778 99999999999999999999998 7777778889999999999999999998764 58899999
Q ss_pred CceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 195 GATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 195 G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
|+++++. + .+++..+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+.-.
T Consensus 259 G~~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~i~~gG~~l~ 320 (544)
T 3o83_A 259 GGCVVMA--P----NPEPLNCFSIIQRHQVNMAS---LVPSAVIMWLEKAAQYKD-QIQSLKLLQVGGASFP 320 (544)
T ss_dssp TCEEEEC--S----SCCHHHHHHHHHHHTCCEEE---ECHHHHHHHHHHHTTTHH-HHTTCCEEEEESSCCC
T ss_pred CCEEEEC--C----CCCHHHHHHHHHHHCCCEEE---echHHHHHHHhchhhccc-cCCcceEEEEcCCCCC
Confidence 9999999 5 57899999999999999977 566666777776654321 2334555555565544
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-37 Score=278.46 Aligned_cols=243 Identities=17% Similarity=0.084 Sum_probs=178.4
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCC---CCC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGND---PDD--YSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLE 89 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~---~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~ 89 (281)
..-..++.+|+.++|++.++++||++|+++.+ ..+ .+++||+||.++++++|+.|+++|+ +||+|+++++|+++
T Consensus 16 ~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e 94 (480)
T 3t5a_A 16 PRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE 94 (480)
T ss_dssp --------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH
T ss_pred cccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH
Confidence 34456778899999999999999999998643 112 2899999999999999999999996 99999999999999
Q ss_pred HHHHHHHHHHhcCeEEEeec---CCCCCCcCC-----------------------c---C--------------------
Q psy9113 90 IVVTMLACARIGAVHSIVVS---KCSGDDMST-----------------------V---P-------------------- 120 (281)
Q Consensus 90 ~~~~~lA~~~~G~~~v~l~~---~~~~~~~~~-----------------------~---~-------------------- 120 (281)
++++++||+++|++++|+++ .++.+++.+ . +
T Consensus 95 ~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (480)
T 3t5a_A 95 YVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNG 174 (480)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSCTTCC--
T ss_pred HHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccccccccC
Confidence 99999999999999999999 666666655 0 0
Q ss_pred -CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCC------CCEEEEeCchhhhhhHhHHHHhhh
Q psy9113 121 -ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKP------GDIYWCTADVGWITGHTYVVYGPL 192 (281)
Q Consensus 121 -~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~------~~~~l~~~pl~h~~gl~~~~~~~l 192 (281)
.......++++ |+|||||||.||||+++|+++.. ........++... ++++++.+|++|.+|+...++.+|
T Consensus 175 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l 253 (480)
T 3t5a_A 175 YTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRV-NFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPI 253 (480)
T ss_dssp -CCCCSSCCSEEEEECC------CCCEEEEHHHHHH-HHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHH
T ss_pred CCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHH-HHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHHHHHHHHH
Confidence 00011235778 99999999999999999999988 6666666667666 899999999999999878899999
Q ss_pred ccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 193 ANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 193 ~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
..|+++++. +......+++.+++.++++++|. . ..|.++..++............++++++.+...|
T Consensus 254 ~~G~~~v~~--~~~~~~~~~~~~~~~i~~~~~t~-~---~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG 320 (480)
T 3t5a_A 254 LGGYPAVLT--SPVSFLQRPARWMHLMASDFHAF-S---AAPNFAFELAARRTTDDDMAGRDLGNILTILSGS 320 (480)
T ss_dssp HHTCCEEEC--CHHHHHHCTHHHHHHTTSSSEEE-E---EECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECC
T ss_pred HcCCceEEE--CHHHHHHCHHHHHHHHHhhceeE-e---eChHHHHHHHHhhcCcccccccchhhhheeeecC
Confidence 999999998 42111248999999999999994 4 3334445555543222212345566665544444
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=278.40 Aligned_cols=239 Identities=15% Similarity=0.095 Sum_probs=197.1
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCC----CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDP----DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEI 90 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~----~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~ 90 (281)
.++..+...|+.++|.+.++++||++|+++.+. +..+++||+||.++++++|+.|+++|+++||+|+++++|++++
T Consensus 11 ~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 90 (549)
T 3g7s_A 11 FPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY 90 (549)
T ss_dssp CCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH
Confidence 455677888999999999999999999987531 2338999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeEEEeecCCCCCCcCC--------------------------cCC-----------------------
Q psy9113 91 VVTMLACARIGAVHSIVVSKCSGDDMST--------------------------VPA----------------------- 121 (281)
Q Consensus 91 ~~~~lA~~~~G~~~v~l~~~~~~~~~~~--------------------------~~~----------------------- 121 (281)
+++++||+++|++++|+++.++.+++.+ .+.
T Consensus 91 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (549)
T 3g7s_A 91 VMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSED 170 (549)
T ss_dssp HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSSSCHHHHHHHSCSC
T ss_pred HHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCCcCHHHHHhcCccc
Confidence 9999999999999999999999887766 000
Q ss_pred --Cchh-hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 122 --NSER-ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 122 --~~~~-~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.... ..++++ |+|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+.. ++.++..|++
T Consensus 171 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~ 248 (549)
T 3g7s_A 171 FENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAA-NALQLAVATGLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNE 248 (549)
T ss_dssp CCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHH-HHHHHHHHHCCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCE
T ss_pred cccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHH-HHHHHHHHcCCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCce
Confidence 0001 126778 99999999999999999999999 7777777889999999999999999999864 8899999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhh---hhccCCCc
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSL---MWAGSLDI 266 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl---~~~g~~g~ 266 (281)
+++. + .++++.+++.++++++|+++ .+|.++..+++...... ...+++++ ..+|++..
T Consensus 249 ~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~--~~~~~~~lr~~~~gg~~l~ 309 (549)
T 3g7s_A 249 YVVM--G----MFNQEMLAENIEKYKGTFSW---AVPPALNVLVNTLESSN--KTYDWSYLKVFATGAWPVA 309 (549)
T ss_dssp EEEE--S----SCCHHHHHHHHHHTTCCEEE---ECHHHHHHHHHHHHHSC--CCCCCTTCCEEEEESSCCC
T ss_pred EEEc--C----CCCHHHHHHHHHHhCCeEEE---eCCHHHHHHHhhhhhhc--ccCCccceeEEEeCCccCC
Confidence 9999 5 68999999999999999977 66666777777665432 22344444 44555433
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=281.85 Aligned_cols=241 Identities=15% Similarity=0.111 Sum_probs=194.8
Q ss_pred ccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHH
Q psy9113 18 TFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLAC 97 (281)
Q Consensus 18 ~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~ 97 (281)
...+.+|+.++|++.++++||++|+++.+.+.++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||
T Consensus 6 ~~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~ 85 (590)
T 3kxw_A 6 EYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGC 85 (590)
T ss_dssp HHHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred hhcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHH
Confidence 45677899999999999999999998754445689999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeecCCCC---CCcCC----------------------c--C------------------------CCchhh
Q psy9113 98 ARIGAVHSIVVSKCSG---DDMST----------------------V--P------------------------ANSERE 126 (281)
Q Consensus 98 ~~~G~~~v~l~~~~~~---~~~~~----------------------~--~------------------------~~~~~~ 126 (281)
+++|++++|+++..+. +++.+ . . ......
T Consensus 86 ~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (590)
T 3kxw_A 86 LYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALESIELNRSSSWQPTSIK 165 (590)
T ss_dssp HHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGGCCGGGGGGCCCCCCC
T ss_pred HHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechhccccccccCCCCCCC
Confidence 9999999999997642 22222 0 0 001112
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
.++++ |+|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+|+...++.+++.|+++++. +.
T Consensus 166 ~~d~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~--~~ 242 (590)
T 3kxw_A 166 SNDIAFLQYTSGSTMHPKGVMVSHHNLLD-NLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM--SP 242 (590)
T ss_dssp TTSEEEEEECSSCSSSCCEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC--CH
T ss_pred CCCeEEEEeCcCCCCCceEEEeeHHHHHH-HHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe--CH
Confidence 36778 99999999999999999999999 7777777889999999999999999999876689999999999998 42
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
.....++..+++.++++++|.+. .+|.++..+++.+..... ...++++++.+...|
T Consensus 243 ~~~~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~~~~-~~~~l~~lr~~~~gg 298 (590)
T 3kxw_A 243 FSFLQNPLSWLKHITKYKATISG---SPNFAYDYCVKRIREEKK-EGLDLSSWVTAFNGA 298 (590)
T ss_dssp HHHHHCTHHHHHHHHHHTCSEEE---ECTHHHHHHHHHCCGGGG-TTCCCTTCCEEEECS
T ss_pred HHHHHCHHHHHHHHHHhCCeeec---CChhHHHHHHHHhhhhhc-cCCCchhhHHHhhCC
Confidence 11112899999999999999976 677777777776544332 344566665443333
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=278.22 Aligned_cols=236 Identities=18% Similarity=0.169 Sum_probs=194.9
Q ss_pred eccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 17 DTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 17 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
.+.|.+.|+.++|.+.++++||++|+++ .++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus 19 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 19 NGCWAGETFGDLLRDRAAKYGDRIAITC----GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp TTSSCSCCHHHHHHHHHHHHTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cCcccCCCHHHHHHHHHHHCCCCEEEEe----CCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 3467888999999999999999999995 468999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC-----------c--------------------C-------------CC----------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST-----------V--------------------P-------------AN---------- 122 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~-----------~--------------------~-------------~~---------- 122 (281)
|+++|++++|+++.++.+++.+ . + +.
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPV 174 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCCC
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcccccc
Confidence 9999999999999887765543 0 0 00
Q ss_pred --chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhH-HHHhhhccCceE
Q psy9113 123 --SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY-VVYGPLANGATS 198 (281)
Q Consensus 123 --~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~-~~~~~l~~G~~~ 198 (281)
.....++++ ++|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+|+.. .++.+|..|+++
T Consensus 175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~ 253 (539)
T 1mdb_A 175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIY-SLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRV 253 (539)
T ss_dssp CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEE
T ss_pred ccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHH-HHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEE
Confidence 011235778 99999999999999999999998 6666677788999999999999999999865 689999999999
Q ss_pred EEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 199 VIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 199 v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
++. + .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+....
T Consensus 254 v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~~~~gG~~l~~ 312 (539)
T 1mdb_A 254 VLS--P----SPSPDDAFPLIEREKVTITA---LVPPLAMVWMDAASSRRD-DLSSLQVLQVGGAKFSA 312 (539)
T ss_dssp EEC--S----SSSHHHHHHHHHHHTCSEEE---ECHHHHHHHHHHHHHCCC-CCTTCCEEEEESSCCCH
T ss_pred EEC--C----CCCHHHHHHHHHHcCCeEEE---ccHHHHHHHHhCccccCC-CccceeEEEEcCCCCCH
Confidence 998 5 57899999999999999977 566667777766543221 22345555556665443
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=274.78 Aligned_cols=232 Identities=17% Similarity=0.175 Sum_probs=189.3
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
+.|+.++|.+.++++||++|+++. .+++.+||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~G 98 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLING--ANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRG 98 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEET--TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhhcCCCceEEEEC--CCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 479999999999999999999864 345899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC---------------------------------cCC--------------------Cchhhhc
Q psy9113 102 AVHSIVVSKCSGDDMST---------------------------------VPA--------------------NSERERK 128 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~---------------------------------~~~--------------------~~~~~~~ 128 (281)
++++|+++.++.+++.+ ... ......+
T Consensus 99 av~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (536)
T 3ni2_A 99 AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQADENEAPQVDISPD 178 (536)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCEETHHHHTSCGGGCCCCCCCTT
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCccCHHHHhhccccccccCCCCcc
Confidence 99999999999888776 000 0011236
Q ss_pred ccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh----hccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 129 LKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY----VFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 129 ~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~----~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
+++ ++|||||||.||||+++|+++.. ....... .+++.++|++++.+|++|.+|+...++.++..|+++++.
T Consensus 179 d~a~i~~TSGTTG~PKgv~~th~~l~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~-- 255 (536)
T 3ni2_A 179 DVVALPYSSGTTGLPKGVMLTHKGLIT-SVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIM-- 255 (536)
T ss_dssp SEEECCEECTTSSSCEEEEEEHHHHHH-HHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEEC--
T ss_pred CEEEEEcCCCccccchHHHhhHHHHHH-HHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEc--
Confidence 778 99999999999999999999988 4433222 356788999999999999999877889999999999999
Q ss_pred CCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+ .+++..+++.++++++|++. .+|.++..+++....... ...+|+.+..+|++-.
T Consensus 256 ~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~i~~gGe~l~ 310 (536)
T 3ni2_A 256 P----KFEIGSLLGLIEKYKVSIAP---VVPPVMMSIAKSPDLDKH-DLSSLRMIKSGGAPLG 310 (536)
T ss_dssp S----SCCHHHHHHHHHHHTCCEEE---ECHHHHHHHHTCSCGGGS-CCTTCCEEEEESSCCC
T ss_pred C----CCCHHHHHHHHHHhCCeEEE---ccHHHHHHHHhCcccccC-CCccceEEEECCCCCC
Confidence 5 67899999999999999977 556666666665443221 2233444455555543
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=275.56 Aligned_cols=234 Identities=21% Similarity=0.239 Sum_probs=188.1
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.-..+|+.++|.+.++++||++|+++. +.++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+
T Consensus 12 ~~~~~~l~~~l~~~a~~~p~~~A~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 12 DDKMKNIGWMLRQRATVSPRLQAYVEP--STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp CGGGGCHHHHHHHHHHHSTTSEEEEEG--GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhCCCCeEEEeC--CcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 445669999999999999999999964 344699999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC--------------------------cCC-------------------------Cchhhh
Q psy9113 99 RIGAVHSIVVSKCSGDDMST--------------------------VPA-------------------------NSERER 127 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~--------------------------~~~-------------------------~~~~~~ 127 (281)
++|++++|+++.++.+++.+ .+. ......
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAADEPAVECGG 169 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCCCCCCCCCCT
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCcCCCCCCCCC
Confidence 99999999999998887766 000 001123
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCc
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGE 206 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~ 206 (281)
++++ ++|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+...++..+ .|+++++. +
T Consensus 170 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~--~-- 243 (517)
T 3r44_A 170 DDNLFIMYTSGTTGHPKGVVHTHESVHS-AASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM--P-- 243 (517)
T ss_dssp TSEEEEEEECC---CCEEEEEEHHHHHH-HHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC--S--
T ss_pred CCeEEEEECCcccccCceeeeeHHHHHH-HHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe--C--
Confidence 6778 99999999999999999999998 7777777889999999999999999999865445444 99999998 5
Q ss_pred cccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 207 IYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 207 ~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.+++..+++.++++++|++. .+|.++..+++....... ...+|+.+..+|++-.
T Consensus 244 --~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~i~~gGe~l~ 297 (517)
T 3r44_A 244 --QFDATKVWSLIVEERVCIGG---AVPAILNFMRQVPEFAEL-DAPDFRYFITGGAPMP 297 (517)
T ss_dssp --SCCHHHHHHHHHHTTCCEEE---ECHHHHHHHHHSHHHHHC-CCTTCCEEEECSSCCC
T ss_pred --CCCHHHHHHHHHHhCCeEEE---eHHHHHHHHHhCcccccC-CCCcccEEEECCCCCC
Confidence 68999999999999999977 556666666655443221 2234455555555543
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-36 Score=274.30 Aligned_cols=227 Identities=21% Similarity=0.174 Sum_probs=183.8
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.|.++|+.++|++.++++||++|+++ .++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 77 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMV----DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVA 77 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEE----CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence 46788999999999999999999995 57899999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC------------------c----------------------CCC-------------chh
Q psy9113 99 RIGAVHSIVVSKCSGDDMST------------------V----------------------PAN-------------SER 125 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~------------------~----------------------~~~-------------~~~ 125 (281)
++|++++|+++.++.+++.+ . ++. ...
T Consensus 78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (509)
T 3ivr_A 78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPEF 157 (509)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCCCSCCCCCCC
T ss_pred HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccCCCCCCcCCC
Confidence 99999999999998887766 0 000 011
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCC
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLP 204 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~ 204 (281)
..++++ ++|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+... +.++..|+..++. .
T Consensus 158 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~-~~~~~~~g~~~~~--~ 233 (509)
T 3ivr_A 158 GAADGFVIIHTAAVGGRPRGALISQGNLLI-AQSSLVDAWRLTEADVNLGMLPLFHVTGLGLM-LTLQQAGGASVIA--A 233 (509)
T ss_dssp CTTSEEEEEEEEC--CCEEEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCTTSHHHHHHH-HHHHHHTCEEEEC--S
T ss_pred CccccEEEEeCCCCCCCCcEEEEehHHHHH-HHHHHHHhhCCCCCcEEEEeCCCcchhHHHHH-HHHHHhCCcEEEe--c
Confidence 235778 99999999999999999999998 77777778899999999999999999998644 4444445555555 2
Q ss_pred CccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 205 GEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 205 ~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.++++.+++.++++++|+++ .+|.++..+++.... .++++++.+...|.
T Consensus 234 ----~~~~~~~~~~i~~~~~t~~~---~~p~~~~~l~~~~~~------~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 234 ----KFDPAQAARDIEAHKVTVMA---EFAPMLGNILDQAAP------AQLASLRAVTGLDT 282 (509)
T ss_dssp ----SCCHHHHHHHHHHHTCCEEE---EETTHHHHHHHHCCG------GGGTTCCEEEEECC
T ss_pred ----ccCHHHHHHHHHHHCCcEEE---ecHHHHHHHHhcccc------cchhhhheecccCC
Confidence 68999999999999999976 555566677665522 34445554444443
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=278.90 Aligned_cols=236 Identities=36% Similarity=0.553 Sum_probs=190.1
Q ss_pred chhhhhccCCCCCCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLK-SKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
++.++|+++++++||++|+++.+ .+..+++||+||.++++++|+.|+ ++|+++||+|+++++|+++++++++||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 78889999999999999998742 235689999999999999999999 999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC---------------c--------------------CC-------------C----------
Q psy9113 101 GAVHSIVVSKCSGDDMST---------------V--------------------PA-------------N---------- 122 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~---------------~--------------------~~-------------~---------- 122 (281)
|++++|+++.++.+++.+ . +. .
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 242 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLD 242 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEE
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCcccc
Confidence 999999999887665544 0 00 0
Q ss_pred --------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHH
Q psy9113 123 --------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187 (281)
Q Consensus 123 --------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~ 187 (281)
...+.++++ |+|||||||+||||+++|+++...........+++.++|++++..|++|++|+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~ 322 (663)
T 1ry2_A 243 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYV 322 (663)
T ss_dssp HHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHT
T ss_pred HHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHH
Confidence 001235778 99999999999999999999877344455566889999999999999999998778
Q ss_pred HHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 188 VYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 188 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++.+|..|+++++. ++.+...++..+++.|+++++|+++ .+|.++..+++.... . ....++++++.++..|.
T Consensus 323 ~~~~L~~G~t~v~~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~Ps~~~~l~~~~~~-~-~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 323 VYGPLLYGCATLVF--EGTPAYPNYSRYWDIIDEHKVTQFY---VAPTALRLLKRAGDS-Y-IENHSLKSLRCLGSVGE 394 (663)
T ss_dssp THHHHHHTSEEEEE--CSCTTSSCTTHHHHHHHHTTCSEEE---ECHHHHHHHTTSCTT-S-SSSCCCTTCCEEEECSS
T ss_pred HHHHHHhCCEEEEE--CCCCCCCCHHHHHHHHHHcCCCEEE---ecHHHHHHHHhcCcc-c-cccCCcCceEEEEEEcC
Confidence 89999999999999 6444457899999999999999977 566666655543321 1 13456666666555554
|
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=278.86 Aligned_cols=236 Identities=42% Similarity=0.647 Sum_probs=189.6
Q ss_pred chhhhhccCCCCCCCCCccccCC--CCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGND--PDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~--~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
++.++|+++++++||++|+++.+ .+..+.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 57889999999999999998742 2356899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------c-------------------C---CC---------------------
Q psy9113 102 AVHSIVVSKCSGDDMST----------------V-------------------P---AN--------------------- 122 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------~-------------------~---~~--------------------- 122 (281)
++++|+++.++.+++.+ . + ..
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 236 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLW 236 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEE
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCcee
Confidence 99999999887765543 0 0 00
Q ss_pred --------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHH
Q psy9113 123 --------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYV 187 (281)
Q Consensus 123 --------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~ 187 (281)
.....++++ |+|||||||+||||+++|+++...........+++.++|++++..|++|++|+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~ 316 (652)
T 1pg4_A 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYL 316 (652)
T ss_dssp HHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHT
T ss_pred HHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHH
Confidence 001235778 99999999999999999999887343455566889999999999999999998778
Q ss_pred HHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 188 VYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 188 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++.+|..|+++++. ++.+...++..+++.++++++|+++ .+|.++..+++...... ...++++++.++..|.
T Consensus 317 ~~~~L~~G~t~vl~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~~~--~~~~l~sLr~i~~gGe 388 (652)
T 1pg4_A 317 LYGPLACGATTLMF--EGVPNWPTPARMCQVVDKHQVNILY---TAPTAIRALMAEGDKAI--EGTDRSSLRILGSVGE 388 (652)
T ss_dssp THHHHHTTCEEEEE--CSCTTSSSTTHHHHHHHHHTCSEEE---ECHHHHHHHHTTGGGGT--TTCCCTTCCEEEEESS
T ss_pred HHHHHHcCceEEEE--CCCCCCCCHHHHHHHHHHhCCeEEE---eCHHHHHHHHhcCcccc--ccCCcCceEEEEEecC
Confidence 89999999999999 5433347899999999999999977 66666677666543211 3345566655444443
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=278.36 Aligned_cols=230 Identities=15% Similarity=0.148 Sum_probs=192.4
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
.+...|+.+++++.++++||++|+++ .++++||+||.++++++|+.|+++|+++|++|+++++|+++++++++||+
T Consensus 23 ~~~~~tl~~~~~~~a~~~Pd~~Av~~----~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lail 98 (620)
T 4dg8_A 23 LYAHPTVVARFSEMAALHPHREAIRD----RFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAIL 98 (620)
T ss_dssp GGGSCCHHHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCCCCeEEEc----CCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 45677999999999999999999995 56899999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC----------c--------------------C------CCchhhhcccc-eeeeecCCCC
Q psy9113 99 RIGAVHSIVVSKCSGDDMST----------V--------------------P------ANSERERKLKL-RKVVTGSTGK 141 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~----------~--------------------~------~~~~~~~~~~~-i~~TSGTTG~ 141 (281)
++|++++|+++.++.+++.+ + + .......++++ ++|||||||.
T Consensus 99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGSTG~ 178 (620)
T 4dg8_A 99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGR 178 (620)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSCEEEGGGCCCCCCCSSCCCCCTTSEEEEEEEBSSSSS
T ss_pred HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCceeeeccCCcCCccccCCCCCCCCeEEEEECCCcccc
Confidence 99999999999999887766 0 0 00111246788 9999999999
Q ss_pred CceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 142 PKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 142 PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
||||+++|+++.+ .... ...+++.++++++...|++|..++ ..++.+|..|+++++. +. ..+++..+++.+++
T Consensus 179 PKgV~~th~~l~~-~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~--~~--~~~~~~~~~~~i~~ 251 (620)
T 4dg8_A 179 PKAIACTHAGITR-LCLG-QSFLAFAPQMRFLVNSPLSFDAAT-LEIWGALLNGGCCVLN--DL--GPLDPGVLRQLIGE 251 (620)
T ss_dssp CEEEEEEHHHHHH-HHSS-CGGGTTCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC--CS--SSCCHHHHHHHHHT
T ss_pred CeEEEEchHHHHH-HHHH-HHhhCCCCCCEEEEECccCHHHHH-HHHHHHHhcCCEEEeC--cc--ccCCHHHHHHHHHH
Confidence 9999999999987 5444 556788999999999999999997 5789999999999997 32 25789999999999
Q ss_pred eccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 222 YVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 222 ~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++|+++ .+|.++..+++.... ...+|+.+..+|+.-.
T Consensus 252 ~~vt~~~---~~Ps~~~~l~~~~~~----~l~~lr~v~~gGe~l~ 289 (620)
T 4dg8_A 252 RGADSAW---LTASLFNTLVDLDPD----CLGGLRQLLTGGDILS 289 (620)
T ss_dssp TCCCEEE---EEHHHHHHHHHHCGG----GGTTCSEEEEESSCCC
T ss_pred hCCcEEE---ccHHHHHHHHhcChh----hCCCccEEEEEeCcCC
Confidence 9999987 666677766653221 3345666667777654
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-35 Score=274.59 Aligned_cols=235 Identities=17% Similarity=0.186 Sum_probs=194.9
Q ss_pred eccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 17 DTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 17 ~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
+++|++.|+.+++++.++ ||++|+++ .++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++|
T Consensus 21 ~~~~~~~~l~~~~~~~a~--pd~~Av~~----~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA 94 (617)
T 3rg2_A 21 KGYWQDLPLTDILTRHAA--SDSIAVID----GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFA 94 (617)
T ss_dssp TTSCCCCCTTHHHHTTTT--CCSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred cCCCCcCCHHHHHHHhhC--CCCeEEec----CCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHH
Confidence 468999999999999998 99999995 578999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC---------------c-------------------------C----------------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST---------------V-------------------------P---------------- 120 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~---------------~-------------------------~---------------- 120 (281)
|+++|++++|+++..+.+++.+ . .
T Consensus 95 ~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (617)
T 3rg2_A 95 LLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAE 174 (617)
T ss_dssp HHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCS
T ss_pred HHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhccccc
Confidence 9999999999999988766544 0 0
Q ss_pred --CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhH-HHHhhhccCc
Q psy9113 121 --ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTY-VVYGPLANGA 196 (281)
Q Consensus 121 --~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~-~~~~~l~~G~ 196 (281)
.......++++ ++|||||||.||||+++|+++.. ........+++.+++++++.+|++|.+++.. .++.++..|+
T Consensus 175 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~ 253 (617)
T 3rg2_A 175 DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYY-SVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG 253 (617)
T ss_dssp SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTC
T ss_pred ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHH-HHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCC
Confidence 00011235778 99999999999999999999998 7777777889999999999999999988754 5899999999
Q ss_pred eEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccc-cccccchhhhhccCCCcc
Q psy9113 197 TSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFF-CILYTISSLMWAGSLDIR 267 (281)
Q Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~-~~~~~L~sl~~~g~~g~~ 267 (281)
++++. + ..++..+++.++++++|++. .+|.++..+++....... ....+|+.+..+|+.-..
T Consensus 254 ~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~ 316 (617)
T 3rg2_A 254 TVVLA--A----DPSATLCFPLIEKHQVNVTA---LVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSA 316 (617)
T ss_dssp EEEEC--S----SCCHHHHHHHHHHTTCCEEE---ECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCH
T ss_pred EEEEe--C----CCCHHHHHHHHHHhCCcEEE---cchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCH
Confidence 99998 4 46888999999999999987 666666777766543221 123345555566665543
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=272.87 Aligned_cols=231 Identities=16% Similarity=0.162 Sum_probs=186.5
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+|+.+.|++.++++||++|+++ .++++||+||.++++++|+.|.++|+++||+|+++++|+++++++++||+++|+
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~----~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~ 76 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVW----RDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGH 76 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHCCCceEEEe----CCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCC
Confidence 5789999999999999999996 468999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC--------------------cC----------------------CCchhhhcccc-eeeeecCC
Q psy9113 103 VHSIVVSKCSGDDMST--------------------VP----------------------ANSERERKLKL-RKVVTGST 139 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~--------------------~~----------------------~~~~~~~~~~~-i~~TSGTT 139 (281)
+++|+++.++.+++.+ .+ .......++++ ++||||||
T Consensus 77 v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 156 (512)
T 3fce_A 77 AYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGST 156 (512)
T ss_dssp CEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCCSSEEEETHHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC--
T ss_pred EEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccccccceechhhhhhhcccccccCCCccccCCCCCeEEEEECCCCC
Confidence 9999999998887766 00 00111236778 99999999
Q ss_pred CCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceee
Q psy9113 140 GKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITG 219 (281)
Q Consensus 140 G~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i 219 (281)
|.||||+++|+++.. ........+++.++|+++..+|++|.+++ ..++.++..|+++++. +. ...+++..+++.+
T Consensus 157 G~PKgv~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~--~~-~~~~~~~~~~~~i 231 (512)
T 3fce_A 157 GNPKGVQITYNCLVS-FTKWAVEDFNLQTGQVFLNQAPFSFDLSV-MDIYPSLVTGGTLWAI--DK-DMIARPKDLFASL 231 (512)
T ss_dssp --CEEEEEEHHHHHH-HHHHHHHHTTCCSSCEEEECSCTTSGGGH-HHHHHHHHTTCEEEEC--CH-HHHHSHHHHHHHH
T ss_pred CCCceEEEehHHHHH-HHHHHHHhcCCCCCCEEEEeCCccHhHHH-HHHHHHHhCCCEEEEC--CH-HHhhCHHHHHHHH
Confidence 999999999999998 77777778899999999999999999997 4789999999999999 41 1137899999999
Q ss_pred eeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 220 HTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 220 ~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++++|+++ .+|.++..++........ ...+|+.+..+|+.-.
T Consensus 232 ~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~~~~~G~~l~ 274 (512)
T 3fce_A 232 EQSDIQVWT---STPSFAEMCLMEASFSES-MLPNMKTFLFCGEVLP 274 (512)
T ss_dssp HHHCCCEEE---ECHHHHHHHTTSTTCSTT-TSTTCCEEEECSSCCC
T ss_pred HHcCCcEEE---ecHHHHHHHHhhccccch-hCccccEEEEecCcCC
Confidence 999999976 556666665554433221 2334555555565544
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=268.88 Aligned_cols=232 Identities=19% Similarity=0.149 Sum_probs=186.3
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+|+.++|.+.++++||++|+.+. +.++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 79 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVP--ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHhCCCceEEEEc--CCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCc
Confidence 58999999999999999999863 2368999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-----------c--CC------------------------------C-----chhhhcccc-ee
Q psy9113 103 VHSIVVSKCSGDDMST-----------V--PA------------------------------N-----SERERKLKL-RK 133 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-----------~--~~------------------------------~-----~~~~~~~~~-i~ 133 (281)
+++|+++.++.+++.+ . .. . .....++++ ++
T Consensus 80 ~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 159 (504)
T 1t5h_X 80 VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIF 159 (504)
T ss_dssp EEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEEGGGTEETTEECCCSCCCCCCCCCTTSEEEEE
T ss_pred EEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEEecchhhcCcccccCCccCCCCCCCCCeEEEE
Confidence 9999999988776554 0 00 0 011235678 99
Q ss_pred eeecCCCCCceEEEechhHHHHHHHhhhhhccC--CCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccc
Q psy9113 134 VVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDY--KPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCT 211 (281)
Q Consensus 134 ~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~ 211 (281)
|||||||.||||+++|+++.. ........+++ .+++++++.+|++|.+|+...++.++..|+++++. + .++
T Consensus 160 ~TSGTTG~PKgV~~sh~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~--~----~~~ 232 (504)
T 1t5h_X 160 YTSGTTGLPKAAIIPQRAAES-RVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV--E----EFR 232 (504)
T ss_dssp ECCC---CCCEEEEEGGGHHH-HHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEEC--S----SCC
T ss_pred eCCCCCCCCCEEEecHHHHHH-HHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeC--C----CCC
Confidence 999999999999999999998 66666666777 78899999999999999866789999999999999 5 578
Q ss_pred ccccceeeeeeccceeccCCchhHHHHHHHHhhcc-ccccccccchhhhhccCCCc
Q psy9113 212 ADVGWITGHTYVVYGPLANGATSVIVSETLKMLNT-NFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 212 ~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~L~sl~~~g~~g~ 266 (281)
+..+++.++++++|+++ .+|.++..+++.... .......+|+.+..+|+.-.
T Consensus 233 ~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~ 285 (504)
T 1t5h_X 233 PVDALQLVQQEQVTSLF---ATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMP 285 (504)
T ss_dssp HHHHHHHHHHHTCCEEE---CCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCC
T ss_pred HHHHHHHHHHhCCeEEE---eChHHHHHHHhhhccccccccCccccEEEEcCCcCC
Confidence 99999999999999977 566677777766522 11112234455555555544
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-35 Score=269.81 Aligned_cols=238 Identities=17% Similarity=0.091 Sum_probs=191.6
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
....|+.++|.+.++++||++|+++.+.+.++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||++
T Consensus 15 ~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 94 (541)
T 1v25_A 15 DEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPG 94 (541)
T ss_dssp CCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence 34568999999999999999999864334568999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC--------------------------cCC-------C--------------------chhh
Q psy9113 100 IGAVHSIVVSKCSGDDMST--------------------------VPA-------N--------------------SERE 126 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~--------------------------~~~-------~--------------------~~~~ 126 (281)
+|++++|+++.++.+++.+ .+. . ....
T Consensus 95 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (541)
T 1v25_A 95 MGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVP 174 (541)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCCCC
T ss_pred cCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCcccCC
Confidence 9999999999998877666 000 0 0012
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHh--hhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT--HKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~--~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
.++++ ++|||||||.||||+++|+++.. .... ....+++.++|++++.+|++|.+|+. .++.++..|+++++.
T Consensus 175 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~~G~~~v~~-- 250 (541)
T 1v25_A 175 ERAACGMAYTTGTTGLPKGVVYSHRALVL-HSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPYAATLVGAKQVLP-- 250 (541)
T ss_dssp TTSEEEEEEECSSSSSCEEEEEEHHHHHH-HHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHHHTCEEEEC--
T ss_pred CCCcEEEEECCCCCCCCcEeeeehHHHHH-HHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHHHHHhcCceEEee--
Confidence 25677 99999999999999999999987 4433 33456788999999999999999974 678899999999998
Q ss_pred CCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcce
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRM 268 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~ 268 (281)
+. .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+.-...
T Consensus 251 ~~---~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~i~~gG~~l~~~ 308 (541)
T 1v25_A 251 GP---RLDPASLVELFDGEGVTFTA---GVPTVWLALADYLESTGH-RLKTLRRLVVGGSAAPRS 308 (541)
T ss_dssp TT---CCSHHHHHHHHHHTTCCEEE---ECHHHHHHHHHHHHHHTC-CCSSCCEEEECSSCCCHH
T ss_pred CC---CCCHHHHHHHHHhcCeeEEe---cchHHHHHHHhhhhccCC-cchhccEEEECCCCCCHH
Confidence 42 46999999999999999977 666677777766543221 223455555666654433
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-35 Score=271.96 Aligned_cols=239 Identities=17% Similarity=0.141 Sum_probs=185.7
Q ss_pred eeccccccchhhhhccCCCCCCCCCcccc-CCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHH
Q psy9113 16 VDTFWQTETGGHVLTPLPGCTPMKPGAAG-NDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTM 94 (281)
Q Consensus 16 ~~~~~~~~tl~~~l~~~a~~~pd~~a~~~-~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~ 94 (281)
++..+.+.|+.++|.+.++++||++|++. .+...++++||+||.++++++|+.|+++|+++||+|+++++|++++++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 92 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPV 92 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHH
Confidence 34566778999999999999999999761 12235689999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeecCCCCCCcCC--------------------------cC---------CC-----------------
Q psy9113 95 LACARIGAVHSIVVSKCSGDDMST--------------------------VP---------AN----------------- 122 (281)
Q Consensus 95 lA~~~~G~~~v~l~~~~~~~~~~~--------------------------~~---------~~----------------- 122 (281)
+||+++|++++|+++.++.+++.+ .+ ..
T Consensus 93 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 93 LGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHL 172 (550)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHC
T ss_pred HHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccc
Confidence 999999999999999998887766 00 00
Q ss_pred ------------chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhh---ccCCCCCEEEEeCchhhhhhHhH
Q psy9113 123 ------------SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV---FDYKPGDIYWCTADVGWITGHTY 186 (281)
Q Consensus 123 ------------~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~gl~~ 186 (281)
.....++++ |+|||||||.||||+++|+++.. ........ .++.+++++++.+|++|.+|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~- 250 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACV-RFSHARDPIFGNQIIPDTAILSVVPFHHGFGMF- 250 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHH-HHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH-
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHH-HHHHhhhhhccccCCCCcEEEEechHHHHHHHH-
Confidence 000124677 99999999999999999999988 54444433 5678899999999999999984
Q ss_pred HHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 187 VVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 187 ~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.++.++..|+++++. + .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|++-.
T Consensus 251 ~~~~~l~~G~~~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~i~~gG~~l~ 320 (550)
T 3rix_A 251 TTLGYLICGFRVVLM--Y----RFEEELFLRSLQDYKIQSAL---LVPTLFSFFAKSTLIDKY-DLSNLHEIASGGAPLS 320 (550)
T ss_dssp HHHHHHHHTCEEEEC--S----SCCHHHHHHHHHHTTCSEEE---ECHHHHHHHHHCCGGGGS-CCTTCCEEEECSSCCC
T ss_pred HHHHHHHcCCEEEEe--C----CCCHHHHHHHHHHcCCeEEE---eCcHHHHHHHhCcccccc-CcccccEEEEecCCCC
Confidence 678899999999999 5 68999999999999999977 566666776665443221 2233444445555443
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=272.26 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=188.9
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
...++.++|++.++++||++|+++ .++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLH----EADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHCCCCeEEEC----CCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 356899999999999999999995 5689999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC-------------------c-------------------CCCchhhhcccc-eeeeecCCCC
Q psy9113 101 GAVHSIVVSKCSGDDMST-------------------V-------------------PANSERERKLKL-RKVVTGSTGK 141 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~-------------------~-------------------~~~~~~~~~~~~-i~~TSGTTG~ 141 (281)
|++++|+++.++.+++.+ . ........++++ |+|||||||.
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~ 228 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGSTGR 228 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSSEEEECCC-------CCCCCCCCCTTSEEEEECCSSCCSS
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCCcceeeeccccccccccccCCCCCCCCeEEEEECCcCCCC
Confidence 999999999999887766 0 000112346778 9999999999
Q ss_pred CceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeeee
Q psy9113 142 PKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHT 221 (281)
Q Consensus 142 PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~ 221 (281)
||||+++|+++.. .... ....++.++|+++..+|++|..+. ..++.++..|+++++. +. ..+++..+++.+++
T Consensus 229 PKgV~~th~~l~~-~~~~-~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~--~~--~~~~~~~~~~~i~~ 301 (570)
T 4gr5_A 229 PKGVMSPHRALTG-TYLG-QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVLQ--SG--QNPDPLEIGELVAR 301 (570)
T ss_dssp CCCEEEEHHHHHH-HHSS-CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEEC--SS--SSCCHHHHHHHHHH
T ss_pred CeEEEEecHHHHH-HHHh-hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEEc--CC--ccCCHHHHHHHHHH
Confidence 9999999999877 4433 455678889999999999987665 5789999999999998 42 25789999999999
Q ss_pred eccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 222 YVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 222 ~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++|++. .+|.++..+++.... ...+|+.+..+|++-.
T Consensus 302 ~~vt~~~---~~P~~~~~l~~~~~~----~~~~lr~~~~gG~~l~ 339 (570)
T 4gr5_A 302 HGVTMLQ---LSASLFNFLVDEVPE----AFEGVRYAITGGEPAS 339 (570)
T ss_dssp HTCCEEE---EEHHHHHHHHHHCGG----GGTTCSEEEEESSCCC
T ss_pred cCCcEEE---ecHHHHHHHHhhchh----hCCCceEEEEecccCC
Confidence 9999977 666777777765432 3345666666666544
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=265.81 Aligned_cols=228 Identities=14% Similarity=0.108 Sum_probs=191.3
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
+|+.++|.+.++++||++|+++ .++++||+||.++++++|+.|+++ +||+|+++++|+++++++++||+++|+
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~----~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Ga 73 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITD----GQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANI 73 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEEC----SSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhcCCceEEEe----CCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCC
Confidence 4788999999999999999995 568999999999999999999986 899999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-----------------------c--C-C-------------------------------C---
Q psy9113 103 VHSIVVSKCSGDDMST-----------------------V--P-A-------------------------------N--- 122 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-----------------------~--~-~-------------------------------~--- 122 (281)
+++|+++.++.+++.+ . . . .
T Consensus 74 v~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (501)
T 3ipl_A 74 EIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPS 153 (501)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CCHH
T ss_pred EEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCCcc
Confidence 9999999998877666 0 0 0 0
Q ss_pred ----chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 123 ----SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 123 ----~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
.....++++ ++|||||||.||||+++|+++.. ........+++.++|++++.+|++|.+|+. .++.++..|++
T Consensus 154 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~~~~l~~G~~ 231 (501)
T 3ipl_A 154 NILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYA-SAIGCKESLGFDRDTNWLSVLPIYHISGLS-VLLRAVIEGFT 231 (501)
T ss_dssp HHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHH-HHHHHHHHTCCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCE
T ss_pred cccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHH-HHHHHHHhhCCCccCEEEEeCcHHHHHHHH-HHHHHHHcCce
Confidence 001236778 99999999999999999999998 777777788999999999999999999985 58999999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcceeehh
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRMWCMV 272 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~~~~~ 272 (281)
+++. + .++++.+++.++++++|+++ .+|.++..+++.... ...+|+.+..+|+.-.....+.
T Consensus 232 ~~~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~----~~~~lr~i~~gG~~l~~~~~~~ 293 (501)
T 3ipl_A 232 VRIV--D----KFNAEQILTMIKNERITHIS---LVPQTLNWLMQQGLH----EPYNLQKILLGGAKLSATMIET 293 (501)
T ss_dssp EEEC--S----SCCHHHHHHHHHHSCCCEEE---ECHHHHHHHHHHTCC----SCTTCCEEEECSSCCCHHHHHH
T ss_pred EEeC--C----CCCHHHHHHHHHHcCCcEEE---chHHHHHHHHhcCCC----CcCcccEEEEeCCCCCHHHHHH
Confidence 9999 5 68999999999999999977 566667777766544 2237788888887766544443
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=265.49 Aligned_cols=231 Identities=17% Similarity=0.128 Sum_probs=189.7
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
+|+.+.|++.|+++||++|+++ .++++||+||.++++++|+.|.+. |.++|++|+++++|+++++++++||+++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~----~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G 76 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRS----QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAG 76 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHCCCCeEEEc----CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhC
Confidence 4789999999999999999995 578999999999999999999885 78899999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------c------------------------------CCCchhhhcccc-eeeeecCCC
Q psy9113 102 AVHSIVVSKCSGDDMST----------V------------------------------PANSERERKLKL-RKVVTGSTG 140 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------~------------------------------~~~~~~~~~~~~-i~~TSGTTG 140 (281)
++++|+++.++.+++.+ + +.......++++ ++|||||||
T Consensus 77 ~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG 156 (511)
T 3e7w_A 77 HPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTG 156 (511)
T ss_dssp CCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTS
T ss_pred CEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcccccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCC
Confidence 99999999998887766 0 000111235778 999999999
Q ss_pred CCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccceeee
Q psy9113 141 KPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGH 220 (281)
Q Consensus 141 ~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~ 220 (281)
.||||+++|+++.. ........+++.++++++..+|++|.+++ ..++.++..|+++++. +. ...+++..+++.++
T Consensus 157 ~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~~~~--~~-~~~~~~~~~~~~i~ 231 (511)
T 3e7w_A 157 NPKGVQISAANLQS-FTDWICADFPVSGGKIFLNQAPFSFDLSV-MDLYPCLQSGGTLHCV--TK-DAVNKPKVLFEELK 231 (511)
T ss_dssp SCEEEEEEHHHHHH-HHHHHHHHSTTTTTCEEEECSCTTSTHHH-HHHHHHHHTTCEEEEC--CH-HHHHSHHHHHHHHH
T ss_pred CCCEEEEcHHHHHH-HHHHHHHhcCCCccceEEEeCCccHHHHH-HHHHHHHhcCCEEEEc--Ch-hhhcCHHHHHHHHH
Confidence 99999999999998 77777778889999999999999999997 5789999999999998 41 11368999999999
Q ss_pred eeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 221 TYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 221 ~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++++|+++ .+|.++..++........ ....++.+..+|+.-.
T Consensus 232 ~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~l~~~~~~G~~l~ 273 (511)
T 3e7w_A 232 KSGLNVWT---STPSFVQMCLMDPGFSQD-LLPHADTFMFCGEVLP 273 (511)
T ss_dssp HHCCSEEE---ECHHHHHHHHTSTTCSTT-TCTTCCEEEECSSCCC
T ss_pred HcCCcEEE---ecHHHHHHHHhccccccc-cCCcccEEEEecCCCC
Confidence 99999977 556666666665443221 2234455555665543
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=265.90 Aligned_cols=230 Identities=15% Similarity=0.136 Sum_probs=183.0
Q ss_pred cccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHH
Q psy9113 19 FWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACA 98 (281)
Q Consensus 19 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~ 98 (281)
+....|+.++|.+.++++||++|+++ .++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~Al~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 110 (563)
T 1amu_A 35 YPRDKTIHQLFEEQVSKRPNNVAIVC----ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVL 110 (563)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHCCCCeEEEe----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 34456999999999999999999995 46899999999999999999999999999999999999999999999999
Q ss_pred HhcCeEEEeecCCCCCCcCC----------------------cCC--------------------Cchhhhcccc-eeee
Q psy9113 99 RIGAVHSIVVSKCSGDDMST----------------------VPA--------------------NSERERKLKL-RKVV 135 (281)
Q Consensus 99 ~~G~~~v~l~~~~~~~~~~~----------------------~~~--------------------~~~~~~~~~~-i~~T 135 (281)
++|++++|+++.++.+++.+ ... ......++++ ++||
T Consensus 111 ~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~T 190 (563)
T 1amu_A 111 KAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYT 190 (563)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCSCCCCCCCTTSEEEEEEE
T ss_pred HhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhccccCccCCCCCCCCCeEEEEEC
Confidence 99999999999998877766 000 0011235778 9999
Q ss_pred ecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccccc
Q psy9113 136 TGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVG 215 (281)
Q Consensus 136 SGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~ 215 (281)
|||||.||||+++|+++.. ........+++.++|+++...|++|..++ ..++.+|+.|+++++. +.. ...++..+
T Consensus 191 SGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~~--~~~-~~~~~~~~ 265 (563)
T 1amu_A 191 SGTTGNPKGTMLEHKGISN-LKVFFENSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYII--LKD-TINDFVKF 265 (563)
T ss_dssp C-----CEEEEEESHHHHH-HHHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC--CHH-HHTCHHHH
T ss_pred CCCCCCCcEEEEehHHHHH-HHHHHHHhcCCCCCCEEEEeCCccHHHHH-HHHHHHHHCCCEEEEc--ChH-hhcCHHHH
Confidence 9999999999999999988 66666777889999999999999999987 4788999999999998 421 13688999
Q ss_pred ceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 216 WITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 216 ~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
++.++++++|++. .+|.++..+ ... ...+|+.+..+|+.-..
T Consensus 266 ~~~i~~~~~t~~~---~~P~~~~~l----~~~---~~~~lr~~~~gG~~l~~ 307 (563)
T 1amu_A 266 EQYINQKEITVIT---LPPTYVVHL----DPE---RILSIQTLITAGSATSP 307 (563)
T ss_dssp HHHHHHTTCCEEE---ECHHHHTTS----CTT---TCCSCSEEEEESSCCCH
T ss_pred HHHHHHcCCcEEE---eCHHHHHHH----Hhc---ccccccEEEEEEecCCH
Confidence 9999999999976 555544332 211 22456666666665543
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=276.76 Aligned_cols=232 Identities=18% Similarity=0.139 Sum_probs=188.6
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..|+.++|.+.++++||++|+++. ..++.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~G 137 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLING--PTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRG 137 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEET--TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC--CCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 479999999999999999999964 346899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC---------------------------------cCC---------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST---------------------------------VPA--------------------------- 121 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~---------------------------------~~~--------------------------- 121 (281)
++++|++|.++.+++.+ ...
T Consensus 138 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (979)
T 3tsy_A 138 ATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 217 (979)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGS
T ss_pred CEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcccccCCcccccHHHHhhccccccccC
Confidence 99999999998887766 000
Q ss_pred -Cchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhh----hhccCCCCCEEEEeCchhhhhhHhHHHHhhhccC
Q psy9113 122 -NSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK----YVFDYKPGDIYWCTADVGWITGHTYVVYGPLANG 195 (281)
Q Consensus 122 -~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~----~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G 195 (281)
......++++ |+|||||||.||||+++|+++.. ...... ..+++.++|++++.+|++|.+|+...++.++..|
T Consensus 218 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G 296 (979)
T 3tsy_A 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVT-SVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVG 296 (979)
T ss_dssp CCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHH-HHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHT
T ss_pred CcCCCCccceEEEEeCCCCCCCCeEEEechHHHHH-HHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcC
Confidence 0001236778 99999999999999999999988 443332 2356788999999999999999877789999999
Q ss_pred ceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 196 ATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+++++. + .++++.+++.++++++|++. .+|.++..+++....... ...+|+.+..+|++..
T Consensus 297 ~~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~~~~gg~~l~ 357 (979)
T 3tsy_A 297 AAILIM--P----KFEINLLLELIQRCKVTVAP---MVPPIVLAIAKSSETEKY-DLSSIRVVKSGAAPLG 357 (979)
T ss_dssp CEEEEC--S----SCCHHHHHHHHHHHTCCEEE---ECHHHHHHHHHCGGGGTS-CCTTCCEEEESSCCCC
T ss_pred cEEEEe--C----CCCHHHHHHHHHHhCCeEEE---cHHHHHHHHHhCccccCC-CccceEEEEEcCCCCC
Confidence 999999 5 67899999999999999976 556666666665544221 2233444444555443
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=261.34 Aligned_cols=234 Identities=14% Similarity=0.048 Sum_probs=184.3
Q ss_pred cccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHh
Q psy9113 21 QTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARI 100 (281)
Q Consensus 21 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~ 100 (281)
+..|+.+.|++.++++||++|+.+ .++++||+||.++++++|+.|.+.|+++||+|+++++|+++++++++||+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDC----LGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHCCCCcceec----CCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 346899999999999999999995 5789999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEeecCCCCCCcCC--------------------------------------cC--CCchhhhcccc-eeeeecCC
Q psy9113 101 GAVHSIVVSKCSGDDMST--------------------------------------VP--ANSERERKLKL-RKVVTGST 139 (281)
Q Consensus 101 G~~~v~l~~~~~~~~~~~--------------------------------------~~--~~~~~~~~~~~-i~~TSGTT 139 (281)
|++++|+++.++.+++.+ .+ .......++++ ++||||||
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 157 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTT 157 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC--
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCC
Confidence 999999999999887766 00 01112336778 99999999
Q ss_pred CCCceEEEechhHHHHHHHhhhhh--ccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccce
Q psy9113 140 GKPKGVLHTTGGYLLYAATTHKYV--FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWI 217 (281)
Q Consensus 140 G~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~ 217 (281)
|.||||+++|+++.. ........ ++..++++++...|++|..++ ..++.++..|+++++. +. ....++..+++
T Consensus 158 G~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~l~~G~~~~~~--~~-~~~~~~~~~~~ 232 (521)
T 3l8c_A 158 GQPKGVQISHDNLLS-FTNWMIEDAAFDVPKQPQMLAQPPYSFDLSV-MYWAPTLALGGTLFAL--PK-ELVADFKQLFT 232 (521)
T ss_dssp -CCCEEEEEHHHHHH-HHHHHHHCTTTCCCSSCEEECCSCTTSGGGH-HHHHHHHHTTCEEEEC--CG-GGTTCHHHHHH
T ss_pred CCCCEEEEehHHHHH-HHHHHhhccccCCCCCCeEEecCCccHHHHH-HHHHHHHhcCCEEEEc--CH-HHhhCHHHHHH
Confidence 999999999999987 55444433 677889999999999999886 5788999999999998 42 12358899999
Q ss_pred eeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 218 TGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 218 ~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
.++++++|.+. .+|.++..++........ ...+|+.+..+|+.-..
T Consensus 233 ~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~~~~gG~~l~~ 278 (521)
T 3l8c_A 233 TIAQLPVGIWT---STPSFADMAMLSDDFCQA-KMPALTHFYFDGEELTV 278 (521)
T ss_dssp HHHHSCCSEEE---ECHHHHHHHHTSTTCSTT-TCTTCCEEEECSSCCCH
T ss_pred HHHHcCCcEEE---eCCCHHHHHhhhhccccc-cCccceEEEEecccCCH
Confidence 99999999976 555665555544433221 23344555555655443
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=264.44 Aligned_cols=230 Identities=21% Similarity=0.162 Sum_probs=186.1
Q ss_pred chh-hhhccCCCCCCCCCccccC-CCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 24 TGG-HVLTPLPGCTPMKPGAAGN-DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 24 tl~-~~l~~~a~~~pd~~a~~~~-~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
|+. ++|++.|+++||++|+++. +.+..+.+||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|
T Consensus 56 n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~G 135 (580)
T 3etc_A 56 NFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLG 135 (580)
T ss_dssp CHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence 444 9999999999999999864 23456899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------------------cC-C-------------------------------
Q psy9113 102 AVHSIVVSKCSGDDMST----------------------------VP-A------------------------------- 121 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------------------~~-~------------------------------- 121 (281)
++++|+++.++.+++.+ .+ .
T Consensus 136 av~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (580)
T 3etc_A 136 AIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFER 215 (580)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCCC
T ss_pred EEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCccccc
Confidence 99999999998776655 00 0
Q ss_pred C---chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCce
Q psy9113 122 N---SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGAT 197 (281)
Q Consensus 122 ~---~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~ 197 (281)
+ .....++++ ++|||||||.||+|+++|.++.. .........++.++++++...|++|..++...++.++..|++
T Consensus 216 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 216 PTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG-HILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp CCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHH-HHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred CccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHH-HHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 0 012236778 99999999999999999998887 666556667888999999999999998877678899999999
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhh---hccCCCc
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLM---WAGSLDI 266 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~---~~g~~g~ 266 (281)
+++.+.+ .++++.+++.++++++|+++ .+|.++..+++. .. ...++++++ .+|++-.
T Consensus 295 ~~~~~~~----~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~-~~----~~~~l~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 295 VFVYDYD----RFEAKNMLEKASKYGVTTFC---APPTIYRFLIKE-DL----SHYNFSTLKYAVVAGEPLN 354 (580)
T ss_dssp EEEEECS----SCCHHHHHHHHHHHTCCEEE---ECHHHHHHHHTS-CC-------CCTTCCEEEECSSCCC
T ss_pred EEEecCC----CCCHHHHHHHHHHHCCeEEE---ccHHHHHHHHhc-cc----ccCCCccceEEEEccCCCC
Confidence 9987222 67999999999999999987 677777666653 21 334455554 4555443
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=259.87 Aligned_cols=226 Identities=16% Similarity=0.129 Sum_probs=180.8
Q ss_pred hhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCeEE
Q psy9113 26 GHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105 (281)
Q Consensus 26 ~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~~v 105 (281)
.+++.+.++++||++++.... .+++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|++++
T Consensus 3 ~~l~~~~a~~~p~~~a~~~~~-~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~v 81 (503)
T 4fuq_A 3 ANLFARLFDKLDDPHKLAIET-AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYL 81 (503)
T ss_dssp CCHHHHHHSCCSCTTSEEEEE-TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEE
T ss_pred hhHHHHHHHhCCCCceEEEec-CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEE
Confidence 356777888999999987321 2457899999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCcCC----------c-----------------------CC------------------Cchhhhcccc-ee
Q psy9113 106 IVVSKCSGDDMST----------V-----------------------PA------------------NSERERKLKL-RK 133 (281)
Q Consensus 106 ~l~~~~~~~~~~~----------~-----------------------~~------------------~~~~~~~~~~-i~ 133 (281)
|+++.++.+++.+ + .. ......++++ ++
T Consensus 82 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~ 161 (503)
T 4fuq_A 82 PLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLAAIL 161 (503)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEEEEE
T ss_pred ecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeEEEE
Confidence 9999998887766 0 00 0011236778 99
Q ss_pred eeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccc
Q psy9113 134 VVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTAD 213 (281)
Q Consensus 134 ~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~ 213 (281)
|||||||.||||+++|+++.. ........+++.++|+++..+|++|.+|+...++.++..|+++++. + .++++
T Consensus 162 ~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~--~----~~~~~ 234 (503)
T 4fuq_A 162 YTSGTTGRSKGAMLSHDNLAS-NSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL--P----KFDPD 234 (503)
T ss_dssp ECC--CCSCCEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC--S----SCCHH
T ss_pred ECCCcccCCeEEEEeHHHHHH-HHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc--C----CCCHH
Confidence 999999999999999999998 7777778889999999999999999999876778899999999999 5 68999
Q ss_pred ccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCC
Q psy9113 214 VGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLD 265 (281)
Q Consensus 214 ~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g 265 (281)
.+++.++ ++|+++ ..|.++..+++....... ...+|+.+..+|++-
T Consensus 235 ~~~~~i~--~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~~~~gg~~l 280 (503)
T 4fuq_A 235 KILDLMA--RATVLM---GVPTFYTRLLQSPRLTKE-TTGHMRLFISGSAPL 280 (503)
T ss_dssp HHHHHHT--TCCEEE---ECHHHHHHHHTCTTCSTT-TTTTCCEEEECSSCC
T ss_pred HHHHHHh--hcCEEE---EHHHHHHHHHhCCCcccc-chhhcEEEEECCCCC
Confidence 9999998 788866 556666777665543221 223344444555543
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-33 Score=257.01 Aligned_cols=229 Identities=20% Similarity=0.147 Sum_probs=181.3
Q ss_pred chhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 24 TGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 24 tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
++.+++.+.++ +||++|+++ .++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 99 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYID----DTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVV 99 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEEC----SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhhhc-cCCceEEEe----CCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCce
Confidence 58899999999 999999995 3578999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC----------------------c----C-C-------C----------c---------------h
Q psy9113 104 HSIVVSKCSGDDMST----------------------V----P-A-------N----------S---------------E 124 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~----------------------~----~-~-------~----------~---------------~ 124 (281)
++|+++.++.+++.+ . + . . . .
T Consensus 100 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (529)
T 2v7b_A 100 PVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAA 179 (529)
T ss_dssp EEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCC
T ss_pred EEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccC
Confidence 999999988776555 0 0 0 0 0 0
Q ss_pred hhhcccc-eeeeecCCCCCceEEEechhH-HHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEec
Q psy9113 125 RERKLKL-RKVVTGSTGKPKGVLHTTGGY-LLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202 (281)
Q Consensus 125 ~~~~~~~-i~~TSGTTG~PK~v~~s~~~l-~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~ 202 (281)
...++++ ++|||||||.||||+++|+++ .. ........+++.++|+++..+|++|.+|+...++.++..|+++++.
T Consensus 180 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~-~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~- 257 (529)
T 2v7b_A 180 TGCDDIAFWLYSSGSTGKPKGTVHTHANLYWT-AELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM- 257 (529)
T ss_dssp CCTTSEEEEEEC-----CCCEEEEEHHHHHHH-HHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC-
T ss_pred CCCCCeEEEEECCCCCCCCceEEEEhhHHHHH-HHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe-
Confidence 1125677 999999999999999999999 55 5555556678899999999999999999877788899999999987
Q ss_pred CCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 203 LPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 203 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
+. .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+....
T Consensus 258 -~~---~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~lr~~~~gGe~l~~ 314 (529)
T 2v7b_A 258 -AE---RPTADAIFARLVEHRPTVFY---GVPTLYANMLVSPNLPAR-ADVAIRICTSAGEALPR 314 (529)
T ss_dssp -CS---CCCHHHHHHHHHHSCCSEEE---ECHHHHHHHHTCTTCCCG-GGCCCCEEEECSSCCCH
T ss_pred -cC---CCCHHHHHHHHHHhCCEEEE---ecHHHHHHHHhCcccccc-cCCceEEEEEcCCCCCH
Confidence 42 57899999999999999977 556666776665433221 12356666666666543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=259.01 Aligned_cols=229 Identities=15% Similarity=0.059 Sum_probs=183.6
Q ss_pred cchhh-hhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 23 ETGGH-VLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 23 ~tl~~-~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
.|+.+ .+.+.++++ |++|+++. ..++++||+||.++++++|+.|++.|+++||+|+++++|+++++++++||+++|
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~G 101 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNA--VTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIG 101 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEET--TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHT
T ss_pred CcHHHHHHHhhhccc-CCceEEEc--CCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhC
Confidence 58999 888888889 99999863 246899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC--------------------------cC-------------------------------CCc-
Q psy9113 102 AVHSIVVSKCSGDDMST--------------------------VP-------------------------------ANS- 123 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~--------------------------~~-------------------------------~~~- 123 (281)
++++|+++.++.+++.+ .+ .+.
T Consensus 102 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (548)
T 2d1s_A 102 VGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQAS 181 (548)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCGG
T ss_pred CEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCcc
Confidence 99999999998776655 00 000
Q ss_pred hhh-----h-cccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhh---ccCCCCCEEEEeCchhhhhhHhHHHHhhhc
Q psy9113 124 ERE-----R-KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV---FDYKPGDIYWCTADVGWITGHTYVVYGPLA 193 (281)
Q Consensus 124 ~~~-----~-~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~---~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~ 193 (281)
... . ++++ ++|||||||.||||+++|+++.. ........ +++.++|+++..+|++|.+|+...++.++
T Consensus 182 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l- 259 (548)
T 2d1s_A 182 SFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVT-RFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI- 259 (548)
T ss_dssp GCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHH-HHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-
T ss_pred cccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHH-HHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-
Confidence 011 2 5677 99999999999999999999988 55555544 67888999999999999999866677888
Q ss_pred cCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 194 NGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 194 ~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
.|+++++. + .++++.+++.++++++|+++ .+|.++..+++....... ...+|+.+..+|+.-.
T Consensus 260 ~G~~~v~~--~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~-~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 260 CGFRVVML--T----KFDEETFLKTLQDYKCTSVI---LVPTLFAILNKSELLNKY-DLSNLVEIASGGAPLS 322 (548)
T ss_dssp TTCEEEEC--C----CCCHHHHHHHHHHTTEEEEE---ECHHHHHHHHHCSCGGGS-CCTTCCEEEECSSCCC
T ss_pred cCcEEEEc--C----CCCHHHHHHHHHHcCCcEEE---ecHHHHHHHHhCcccccc-cccceeEEEEcCccCC
Confidence 99999998 5 57999999999999999977 566666776664433211 2223444445555443
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=257.90 Aligned_cols=231 Identities=14% Similarity=0.127 Sum_probs=179.1
Q ss_pred CCCCceeccccccchhhhhccCCCCCCC-CCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHH
Q psy9113 11 GKCSIVDTFWQTETGGHVLTPLPGCTPM-KPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLE 89 (281)
Q Consensus 11 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd-~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~ 89 (281)
.+..+++.....+|+.+.|.+.++++|+ ++|+++ .++++||+||.++++++|+.|. .|++|+++++|+++
T Consensus 10 ~~~~~~~~~~~~~tl~~~l~~~a~~~p~d~~Al~~----~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~ 80 (505)
T 3nyq_A 10 HSSGLVPRGSHMSSLFPALSPAPTGAPADRPALRF----GERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAME 80 (505)
T ss_dssp --------------CCTTTSSCCCSGGGGSEEEEE----TTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHH
T ss_pred cccCcccCCcccchhHHHHHHHHHhCCCCCeEEEE----CCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHH
Confidence 3456778888888999999999999997 999995 5789999999999999998764 48899999999999
Q ss_pred HHHHHHHHHHhcCeEEEeecCCCCCCcCC-----------c-------------------------CCCchhhhcccc-e
Q psy9113 90 IVVTMLACARIGAVHSIVVSKCSGDDMST-----------V-------------------------PANSERERKLKL-R 132 (281)
Q Consensus 90 ~~~~~lA~~~~G~~~v~l~~~~~~~~~~~-----------~-------------------------~~~~~~~~~~~~-i 132 (281)
++++++||+++|++++|+++.++.+++.+ . ........++++ +
T Consensus 81 ~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i 160 (505)
T 3nyq_A 81 TGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALV 160 (505)
T ss_dssp HHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTCCCCCCCCCCCTTSEEEE
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccccccCCCCCCCCCCCeEEE
Confidence 99999999999999999999999887776 0 000112336778 9
Q ss_pred eeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccc
Q psy9113 133 KVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTA 212 (281)
Q Consensus 133 ~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~ 212 (281)
+|||||||.||||+++|+++.. ........+++.++|+++..+|++|..|+...++.++..|+++++. + .+++
T Consensus 161 ~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~--~----~~~~ 233 (505)
T 3nyq_A 161 VYTSGTTGPPKGAVIPRRALAT-TLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL--G----RFST 233 (505)
T ss_dssp EEECCSSSSCEEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC--S----SCCH
T ss_pred EeCCCCcCCCCeEEEeHHHHHH-HHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC--C----CCCh
Confidence 9999999999999999999998 7777777889999999999999999999887899999999999998 5 6788
Q ss_pred cccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhcc
Q psy9113 213 DVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAG 262 (281)
Q Consensus 213 ~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g 262 (281)
+.+++.+ ++++|+++ .+|.++..+++.+..... ...++++++.+.
T Consensus 234 ~~~~~~i-~~~~t~~~---~~P~~~~~l~~~~~~~~~-~~~~l~~lr~i~ 278 (505)
T 3nyq_A 234 EGAAREL-NDGATMLF---GVPTMYHRIAETLPADPE-LAKALAGARLLV 278 (505)
T ss_dssp HHHHHHH-TTTCCEEE---ECHHHHHHHHHHGGGCHH-HHHHHHHCSEEE
T ss_pred HHHHHHH-hhCCeEEE---ehHHHHHHHHHhhhcCch-hhcccccceEEE
Confidence 9999999 78999977 566667777776543321 223455555433
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=255.86 Aligned_cols=234 Identities=22% Similarity=0.258 Sum_probs=182.9
Q ss_pred chhhhhccCCCC-----CCCCCccccCCCC-CCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEeCCcHHHHHHHHH
Q psy9113 24 TGGHVLTPLPGC-----TPMKPGAAGNDPD-DYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLA 96 (281)
Q Consensus 24 tl~~~l~~~a~~-----~pd~~a~~~~~~~-~~~~~Ty~~l~~~~~~la~~L~~~-g~~~g~~V~l~~~n~~~~~~~~lA 96 (281)
++.+++++.++. +||++|+++.+.+ .++++||+||.++++++|+.|++. |+++||+|+++++|+++++++++|
T Consensus 39 ~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA 118 (570)
T 3c5e_A 39 FASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILG 118 (570)
T ss_dssp HHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 567889888887 9999999874322 358999999999999999999998 999999999999999999999999
Q ss_pred HHHhcCeEEEeecCCCCCCcCC--------------------------cCC-------C---------------------
Q psy9113 97 CARIGAVHSIVVSKCSGDDMST--------------------------VPA-------N--------------------- 122 (281)
Q Consensus 97 ~~~~G~~~v~l~~~~~~~~~~~--------------------------~~~-------~--------------------- 122 (281)
|+++|++++|+++.++.+++.+ .+. .
T Consensus 119 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (570)
T 3c5e_A 119 CIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTH 198 (570)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSCC
T ss_pred HHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhcccccc
Confidence 9999999999999988776655 000 0
Q ss_pred --chhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEE
Q psy9113 123 --SERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSV 199 (281)
Q Consensus 123 --~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v 199 (281)
.....++++ |+|||||||.||||+++|+.+........ ..+++.++|+++...|++|.+|+...++.++..|++++
T Consensus 199 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~ 277 (570)
T 3c5e_A 199 HCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTF 277 (570)
T ss_dssp CCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEE
T ss_pred cccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEE
Confidence 011235677 99999999999999999994432122222 56788899999999999999998768899999999999
Q ss_pred EecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 200 IVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
+. +. ..+++..+++.++++++|.++ .+|.++..+++.. .... ...+|+.+..+|+....
T Consensus 278 ~~--~~--~~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~-~~~~-~~~~lr~i~~gGe~l~~ 336 (570)
T 3c5e_A 278 VH--LL--PKFDPLVILKTLSSYPIKSMM---GAPIVYRMLLQQD-LSSY-KFPHLQNCVTVGESLLP 336 (570)
T ss_dssp EE--CC--SSCCHHHHHHHHHHSCCCEEE---ECHHHHHHHHTSC-TTTC-CCTTCCEEEEESSCCCH
T ss_pred Ee--cC--CCCCHHHHHHHHHHhCCeEEe---ccHHHHHHHHhcc-cccc-ccccceEEEEcCCcCCH
Confidence 98 42 157899999999999999977 5666666666541 1110 22344555556665543
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-32 Score=254.70 Aligned_cols=236 Identities=16% Similarity=0.070 Sum_probs=175.9
Q ss_pred ceeccccccchhhhhccCCCCCCCCCccccCCC------CCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcH
Q psy9113 15 IVDTFWQTETGGHVLTPLPGCTPMKPGAAGNDP------DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVL 88 (281)
Q Consensus 15 ~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~------~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~ 88 (281)
+...+++.+|+.++|++.|+++||++|+++.+. ...+++||+||.++++++|+.|.+.|+ +||+|+++++|++
T Consensus 12 ~~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 90 (562)
T 3ite_A 12 VSAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSL 90 (562)
T ss_dssp ------CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCH
T ss_pred cceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCH
Confidence 566789999999999999999999999986421 124789999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHHHhcCeEEEeecCCCCCCcCC-------------------c--C------------------------CCc
Q psy9113 89 EIVVTMLACARIGAVHSIVVSKCSGDDMST-------------------V--P------------------------ANS 123 (281)
Q Consensus 89 ~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~-------------------~--~------------------------~~~ 123 (281)
+++++++||+++|++++|+++.++.+++.+ . + ...
T Consensus 91 ~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (562)
T 3ite_A 91 IAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILN 170 (562)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhccccccccccc
Confidence 999999999999999999999999888777 0 0 000
Q ss_pred hhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh--------hccCCCCCEEEEeCchhhhhhHhHHHHhhhcc
Q psy9113 124 ERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY--------VFDYKPGDIYWCTADVGWITGHTYVVYGPLAN 194 (281)
Q Consensus 124 ~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~--------~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~ 194 (281)
....++++ |+|||||||.||||+++|+++.. ....... ...+...+++++..|++|..++ ..++.++..
T Consensus 171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 248 (562)
T 3ite_A 171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSS-FSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI-GEMFLAWRF 248 (562)
T ss_dssp CCCTTSEEEEEEECC---CCEEEEEEHHHHHH-HHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHH-HHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCCCcEEEECchhHHH-HHHHHHhhhccccchhcccCcCceEEEecCchhhhhH-HHHHHHHhc
Confidence 11224567 99999999999999999999987 4443322 2457778999999999998876 478899999
Q ss_pred CceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 195 GATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 195 G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
|+++++. + ....++.+++.++++++|++. .+|.++.. +..... ...+|+.+..+|++-.
T Consensus 249 g~~~~~~--~---~~~~~~~~~~~i~~~~~t~~~---~~P~~l~~----~~~~~~-~~~~lr~~~~gG~~l~ 307 (562)
T 3ite_A 249 GLCAVTG--E---RLSMLDDLPRTFRELGVTHAG---IVPSLLDQ----TGLVPE-DAPHLVYLGVGGEKMT 307 (562)
T ss_dssp TCEEEEC--C---HHHHHHSHHHHHHHTTCCEEE---ECHHHHHH----HTCCGG-GSTTCCEEEEESSCCC
T ss_pred ccEEEec--c---hhhCHHHHHHHHHHcCCCEEE---cCHHHHhh----cccCcc-ccCceEEEEEecCCCC
Confidence 9999988 4 133467888999999999976 44444433 222111 2334454555555443
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-32 Score=274.23 Aligned_cols=229 Identities=20% Similarity=0.206 Sum_probs=190.3
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
..++.+++++.++++||++|+++ .++.+||+||.++++++|+.|++.|+++|++|+++++|+++++++++||+++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~----~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG 538 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTY----SGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAG 538 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEES----SSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCeEEEE----CCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHC
Confidence 46899999999999999999995 56899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC----------------------cCC--------------------Cchhhhcccc-eeeeecC
Q psy9113 102 AVHSIVVSKCSGDDMST----------------------VPA--------------------NSERERKLKL-RKVVTGS 138 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~----------------------~~~--------------------~~~~~~~~~~-i~~TSGT 138 (281)
+++||++|.++.+++.+ .+. .....+++++ ++|||||
T Consensus 539 ~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiyTSGS 618 (1304)
T 2vsq_A 539 AAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGT 618 (1304)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGGGGSCSSCCCCCCCTTSEEEEEEECCS
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccccccccCCCCCCCCCCCeEEEEeCCCC
Confidence 99999999998877665 000 0011235778 9999999
Q ss_pred CCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccccccccee
Q psy9113 139 TGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWIT 218 (281)
Q Consensus 139 TG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~ 218 (281)
||+||||+++|+++.+ . ......+++.++++++...|++|..+. ..++.+|..|+++++. +.. ...++..+++.
T Consensus 619 TG~PKgV~~~h~~l~~-~-~~~~~~~~~~~~d~~l~~~~~~fd~~~-~~~~~~l~~G~~l~~~--~~~-~~~~~~~l~~~ 692 (1304)
T 2vsq_A 619 TGKPKGNITTHANIQG-L-VKHVDYMAFSDQDTFLSVSNYAFDAFT-FDFYASMLNAARLIIA--DEH-TLLDTERLTDL 692 (1304)
T ss_dssp SSSCEEEEEEHHHHHH-H-HSSCCSSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC--CGG-GTTCHHHHHHH
T ss_pred CCCCCEEEEehHHHHH-H-HHHHHhcCCCCCCEEEEECCccHHHHH-HHHHHHHHcCCEEEEC--Chh-hcCCHHHHHHH
Confidence 9999999999999987 4 445566788899999999999998875 6889999999999998 422 25789999999
Q ss_pred eeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 219 GHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 219 i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
++++++|+++ .+|.++..+.+.... ...+|+.+.++|+....
T Consensus 693 i~~~~vt~~~---~~p~~~~~l~~~~~~----~~~~lr~~~~gGe~l~~ 734 (1304)
T 2vsq_A 693 ILQENVNVMF---ATTALFNLLTDAGED----WMKGLRCILFGGERASV 734 (1304)
T ss_dssp HHHHTCCEEE---EEHHHHHHHHHHCSH----HHHTCSEEEEESSCCCH
T ss_pred HHHcCCcEEE---ccHHHHHHHHhhchh----cCCCccEEEEecCCCCH
Confidence 9999999987 677777766554211 23456667777776553
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=152.20 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=98.2
Q ss_pred hcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 127 RKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 127 ~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
.++++ |+|||||||.||||++||+++.+ ........++++++|++++.+|++|++|+. .++.++..|+++++. +.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~--~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAA-SAAMTGKALSLGPGTRALVCLNVGYIAGLM-MLVRGMELDWELTVT--EP 111 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHH-HHHHHHHHTTCCTTCEEEECSCTTSHHHHH-HHHHHHHHTCEEEEE--CC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHH-HHHHHHHHhCCCCCCEEEEECChHHHHHHH-HHHHHHHhCcEEEec--Cc
Confidence 46888 99999999999999999999998 777788889999999999999999999985 678899999999998 41
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
....++.++++++|++. .+|.++..+++...... ...+|+.+..+|++-..
T Consensus 112 ------~~~~~~~i~~~~~t~~~---~~P~~l~~ll~~~~~~~--~l~~lr~v~~gG~~l~~ 162 (358)
T 4gs5_A 112 ------TANPLAGLDHADFDFVA---MVPMQLQSILENSATSG--QVDRLGKVLLGGAPVNH 162 (358)
T ss_dssp ------CSCTTTTCSSCCCSEEE---ECHHHHHHHHHCTTTGG--GGGGGCSEEECSSCCCH
T ss_pred ------cccHHHHHHHhCCeEEE---cChHHHHHhhccccccc--cCCcceEEEEcccCCCc
Confidence 23457789999999977 56667777776554322 22334444455554433
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-15 Score=136.74 Aligned_cols=130 Identities=14% Similarity=0.107 Sum_probs=100.4
Q ss_pred cccc-eeeeecCCCCCceEEEechhHHHHHHHhh---hhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecC
Q psy9113 128 KLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTH---KYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSL 203 (281)
Q Consensus 128 ~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~---~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~ 203 (281)
++++ ++|||||||.||+|+++|+++.. ..... ....++.++|+++...|+.|..+....++.++..|+++++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~-- 162 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDS-WANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPA-- 162 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHH-HHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECC--
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHH-HHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeC--
Confidence 6778 99999999999999999999977 43333 23457889999999999987777666788999999999988
Q ss_pred CCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccccc-ccccchhhhhccCCCcc
Q psy9113 204 PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFC-ILYTISSLMWAGSLDIR 267 (281)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~L~sl~~~g~~g~~ 267 (281)
+ ..+++.+++.++++++|+++ .+|.++..+++........ ...+|+.+..+|++...
T Consensus 163 ~----~~~~~~~~~~i~~~~~t~~~---~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~ 220 (436)
T 3qov_A 163 A----AGNSKRQIKFISDFKTTALH---AIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTD 220 (436)
T ss_dssp C----SCCHHHHHHHHHHHTCCEEE---CCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCH
T ss_pred C----CCCHHHHHHHHHHHCCCEEE---ECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCH
Confidence 5 56889999999999999977 5566677777776543321 13456666666766543
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-15 Score=131.91 Aligned_cols=131 Identities=12% Similarity=-0.009 Sum_probs=98.9
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhh---hhccCCCCCEEEEeCch-hhhhhHhHHHHhhhccCceEEE
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK---YVFDYKPGDIYWCTADV-GWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl-~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
+.++++ ++|||||||.||+|+++|+++.. ...... ..+++.++|+++..+|+ +|..++ ..++.++..|+++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDT-WANLVARSIRAAGARRGDKVHVSYGYGLFTGGL-GAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHH-HHHHHHHHHHHcCCCCCCEEEEcccccccccch-HHHHHHHHcCCEEEe
Confidence 347788 99999999999999999999877 333222 34678899999999998 677765 467899999999998
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccccc-ccccchhhhhccCCCcc
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFC-ILYTISSLMWAGSLDIR 267 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~L~sl~~~g~~g~~ 267 (281)
. + .++++.+++.++++++|+++ .+|.++..+++........ ...+|+.+..+|++...
T Consensus 166 ~--~----~~~~~~~~~~i~~~~~t~l~---~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~ 224 (437)
T 2y27_A 166 F--G----GGQTEKQVQLIQDFRPDIIM---VTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTN 224 (437)
T ss_dssp C--C----SCCHHHHHHHHHHHCCSEEE---ECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCH
T ss_pred C--C----CCCHHHHHHHHHHhCCCEEE---ECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCH
Confidence 7 4 46899999999999999977 5666677777765432211 12456666677766553
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-15 Score=131.66 Aligned_cols=128 Identities=13% Similarity=-0.047 Sum_probs=89.3
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHh---hhhhccCCCCCEEEEeCch-hhhhhHhHHHHhhhccCceEEE
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATT---HKYVFDYKPGDIYWCTADV-GWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~---~~~~~~~~~~~~~l~~~pl-~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
+.++++ ++|||||||.||+|+++|+++.. .... .....++.++|+++...|+ +|..|+. ..+.++..|+ +++
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEA-LISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MFF 165 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHH-HHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CEE
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHH-HHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EEE
Confidence 456778 99999999999999999999988 4442 3345678889999999999 9999975 4566688999 444
Q ss_pred ecCCCcccccccc-----------------------ccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchh
Q psy9113 201 VSLPGEIYWCTAD-----------------------VGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISS 257 (281)
Q Consensus 201 ~~~~~~~~~~~~~-----------------------~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~s 257 (281)
. . .++|. .+++.++++++|+++ .+|.++..+++....... ...+|+.
T Consensus 166 ~--~----~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~---~~Ps~~~~l~~~~~~~~~-~~~~lr~ 235 (369)
T 3hgu_A 166 S--I----DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLV---TTPPVLRELLKRPEVVLQ-MKQSLAQ 235 (369)
T ss_dssp C--C----CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEE---ECHHHHHHHTTCHHHHHH-HHHHCSE
T ss_pred C--c----cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEE---eCHHHHHHHHhhhhhhcc-ccCCeeE
Confidence 4 2 45666 778899999999977 556666666655332111 2234455
Q ss_pred hhhccCCCc
Q psy9113 258 LMWAGSLDI 266 (281)
Q Consensus 258 l~~~g~~g~ 266 (281)
+..+|+.-.
T Consensus 236 i~~gGe~l~ 244 (369)
T 3hgu_A 236 ITLGGTELN 244 (369)
T ss_dssp EEEESSCCC
T ss_pred EEECCccCC
Confidence 555665543
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=131.15 Aligned_cols=131 Identities=15% Similarity=0.037 Sum_probs=98.6
Q ss_pred hhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhh---hhccCCCCCEEEEeCch-hhhhhHhHHHHhhhccCceEEE
Q psy9113 126 ERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHK---YVFDYKPGDIYWCTADV-GWITGHTYVVYGPLANGATSVI 200 (281)
Q Consensus 126 ~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~---~~~~~~~~~~~l~~~pl-~h~~gl~~~~~~~l~~G~~~v~ 200 (281)
+.++++ ++|||||||.||+|+++|+++.. ...... ..+++.++|+++...|+ .|..++ ..++.++..|+++++
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~-~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDT-WANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHH-HHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEEEC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHH-HHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEEEE
Confidence 347788 99999999999999999999877 333222 25778899999999999 466665 467889999999998
Q ss_pred ecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhcccccc-ccccchhhhhccCCCcc
Q psy9113 201 VSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFC-ILYTISSLMWAGSLDIR 267 (281)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~L~sl~~~g~~g~~ 267 (281)
. + .++++.+++.++++++|+++ .+|.++..+++........ ...+|+.+..+|+....
T Consensus 168 ~--~----~~~~~~~~~~i~~~~~t~l~---~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~ 226 (443)
T 2y4o_A 168 M--S----GGQTEKQVQLIRDFEPKIIL---VTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQ 226 (443)
T ss_dssp C--C----SCCHHHHHHHHHHHCCSEEE---ECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCH
T ss_pred C--C----CCCHHHHHHHHHHhCCcEEE---ECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCH
Confidence 8 4 46899999999999999976 5566667777765432211 12456666677776553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 281 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 7e-28 | |
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 2e-07 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 2e-20 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 4e-17 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 8e-17 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 9e-16 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 5e-15 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 6e-15 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 110 bits (276), Expect = 7e-28
Identities = 77/233 (33%), Positives = 106/233 (45%), Gaps = 74/233 (31%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRV---------------------AI 82
G+D ++Y++L +VC+ AN L G++KGD V A+
Sbjct: 95 GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 154
Query: 83 YLPM-----------------------------------VLEIVVTMLACARIGAVHSIV 107
+ + + + V L + +V ++
Sbjct: 155 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 214
Query: 108 VSKCSGDDMSTVPANSERERKLKLRKVVT------------------GSTGKPKGVLHTT 149
V K +G D+ R L + GSTGKPKGVLHTT
Sbjct: 215 VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTT 274
Query: 150 GGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVS 202
GGYL+YAATT KYVFDY PGDIYWCTADVGW+TGH+Y++YGPLA GAT+++
Sbjct: 275 GGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 327
|
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 49.3 bits (117), Expect = 2e-07
Identities = 25/44 (56%), Positives = 33/44 (75%)
Query: 1 WQWYYHSIGGGKCSIVDTFWQTETGGHVLTPLPGCTPMKPGAAG 44
W+WY+ IG KC +VDT+WQTETGG ++TPLPG +K G+A
Sbjct: 391 WEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSAT 434
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 88.4 bits (218), Expect = 2e-20
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 38/240 (15%)
Query: 44 GNDPDDYSRLTYKKLLEEVCKCANVLKSK-GVQKGDRVAIYLPMVLEIVVTMLACARIGA 102
G++P +TYK+LLEEVC+ A VL GV+KGD VA+Y+PMV E ++T+LA +RIGA
Sbjct: 82 GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 141
Query: 103 VHSIVVSKCSGDDMSTVPANSE------------RERKLKLRKVVTGSTGKPKGVLH--- 147
+HS+V + S + + + + + ++ +++V + + GV H
Sbjct: 142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLV 201
Query: 148 ---TTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVY--------------- 189
T + + A K + +++Y
Sbjct: 202 YRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHST 261
Query: 190 -GPLANGATSVIVSL---PGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLN 245
G L ++ + ++++ D+GWITGHTYVVYGPL G +++ T N
Sbjct: 262 AGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPN 321
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 78.8 bits (193), Expect = 4e-17
Identities = 32/252 (12%), Positives = 69/252 (27%), Gaps = 18/252 (7%)
Query: 36 TPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95
K + + R TY ++ + + L++ GV GDRVA +
Sbjct: 24 FGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYF 83
Query: 96 ACARIGAVHSIVVSKCSGDDMSTVPANSE-------RERKLKLRKVVTGSTGKPKGVLHT 148
A +GAV + S +++ + ++E + + V+
Sbjct: 84 AVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMD 143
Query: 149 TGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHT-------YVVYGPLANGATSV-- 199
Y A + P + A T T + L + +
Sbjct: 144 EKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASL 203
Query: 200 --IVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISS 257
+L + + + Y GA V+ L + ++
Sbjct: 204 VDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTF 263
Query: 258 LMWAGSLDIRMW 269
++ + +
Sbjct: 264 TAGVPTVWLALA 275
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 77.8 bits (190), Expect = 8e-17
Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 6/233 (2%)
Query: 46 DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHS 105
P RLT+ +L V A L + G++ RVA+ P ++V+ +LA R+GAV +
Sbjct: 23 VPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPA 82
Query: 106 IVVSKCSGDDMSTVPANSERERKLKL--RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYV 163
++ + +++ + E + R+V G G L+ + Y
Sbjct: 83 LLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYG 142
Query: 164 FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYV 223
+ A +I + P A + + + + VG G V
Sbjct: 143 PPIEDPQR--EPAQPAFIFYTSGTTGLPK--AAIIPQRAAESRVLFMSTQVGLRHGRHNV 198
Query: 224 VYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRMWCMVLWPM 276
V G + + + L + ++ + A L + L+
Sbjct: 199 VLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFAT 251
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 74.6 bits (182), Expect = 9e-16
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 37 PMKPGA-AGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95
+ PG A D +TY + E + A +K G+ R+ + L+ + +L
Sbjct: 31 ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVL 90
Query: 96 ACARIGAVHSIV 107
IG +
Sbjct: 91 GALFIGVAVAPA 102
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 72.6 bits (177), Expect = 5e-15
Identities = 14/77 (18%), Positives = 36/77 (46%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
+ +LTY +L + + A + KG+ K V I + +++ + +LA + G + +
Sbjct: 44 CENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 103
Query: 108 VSKCSGDDMSTVPANSE 124
+ + + + +S+
Sbjct: 104 DIEYPKERIQYILDDSQ 120
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 72.3 bits (176), Expect = 6e-15
Identities = 16/77 (20%), Positives = 34/77 (44%)
Query: 48 DDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAVHSIV 107
+ +Y++L + A + G+Q+ DRV + LP + E + A R+GA+
Sbjct: 46 CGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105
Query: 108 VSKCSGDDMSTVPANSE 124
+ +++ +E
Sbjct: 106 LPSHRSSEITYFCEFAE 122
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 99.97 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 99.97 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 99.97 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=1.4e-38 Score=298.20 Aligned_cols=235 Identities=42% Similarity=0.653 Sum_probs=193.2
Q ss_pred hhhhccCCCCCCCCCccccC--CCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcCe
Q psy9113 26 GHVLTPLPGCTPMKPGAAGN--DPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGAV 103 (281)
Q Consensus 26 ~~~l~~~a~~~pd~~a~~~~--~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~~ 103 (281)
..+|+++++.+||++|+++. +.+..+++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|++
T Consensus 75 ~n~ldrh~~~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav 154 (643)
T d1pg4a_ 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAV 154 (643)
T ss_dssp HHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHhCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeE
Confidence 44677888889999999864 3345678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCcCC-----------------------------------------------------cC----------
Q psy9113 104 HSIVVSKCSGDDMST-----------------------------------------------------VP---------- 120 (281)
Q Consensus 104 ~v~l~~~~~~~~~~~-----------------------------------------------------~~---------- 120 (281)
++|+++.++.+++.+ ..
T Consensus 155 ~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 234 (643)
T d1pg4a_ 155 HSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWR 234 (643)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHH
T ss_pred EEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcccccccccchhhh
Confidence 999999998776654 00
Q ss_pred ----------CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHH
Q psy9113 121 ----------ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVY 189 (281)
Q Consensus 121 ----------~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~ 189 (281)
.....+.++++ |+|||||||.||||+++|++++..........+++.++|++++..|++|++|+...++
T Consensus 235 ~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~ 314 (643)
T d1pg4a_ 235 DLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 314 (643)
T ss_dssp HHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTH
T ss_pred hhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHH
Confidence 00111336788 9999999999999999999977645666666788999999999999999999887888
Q ss_pred hhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 190 GPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 190 ~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
.+|+.|+++++. ++.+...++..+++.++++++|+++ .+|.++..+++...... ...+|++|+.++..|..
T Consensus 315 ~~L~~G~t~vl~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~l~~l~~~~~~~~--~~~dl~sLr~i~~~G~p 385 (643)
T d1pg4a_ 315 GPLACGATTLMF--EGVPNWPTPARMCQVVDKHQVNILY---TAPTAIRALMAEGDKAI--EGTDRSSLRILGSVGEP 385 (643)
T ss_dssp HHHHTTCEEEEE--CSCTTSSSTTHHHHHHHHHTCSEEE---ECHHHHHHHHTTGGGGT--TTCCCTTCCEEEEESSC
T ss_pred HHHHhCCEEEEe--cCCCCCCCHHHHHHHHHHHCCcEEE---ehHHHHHHHHhCcchhc--cccCCCceEEEEEEeCC
Confidence 999999999998 6555567899999999999999977 66666777766544322 45667777766665553
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.3e-38 Score=292.97 Aligned_cols=235 Identities=36% Similarity=0.544 Sum_probs=191.8
Q ss_pred hhhhccCCCCCCCCCccccC--CCCCCeeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 26 GHVLTPLPGCTPMKPGAAGN--DPDDYSRLTYKKLLEEVCKCANVLK-SKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 26 ~~~l~~~a~~~pd~~a~~~~--~~~~~~~~Ty~~l~~~~~~la~~L~-~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.++|+++|+++||++|+++. +.+..+++||+||.++++++|+.|+ ++|+++||+|+++++|+++++++++||+++|+
T Consensus 62 ~n~ldr~a~~~pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Ga 141 (640)
T d1ry2a_ 62 YNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGA 141 (640)
T ss_dssp HHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCCCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCce
Confidence 67788999999999999864 3456689999999999999999997 57999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC----------------------------------------------------------------
Q psy9113 103 VHSIVVSKCSGDDMST---------------------------------------------------------------- 118 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~---------------------------------------------------------------- 118 (281)
+++|+++.++.+++.+
T Consensus 142 v~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (640)
T d1ry2a_ 142 IHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWA 221 (640)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHH
T ss_pred EeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeeccccccccccccccccccc
Confidence 9999999998887654
Q ss_pred --------cCCCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHH
Q psy9113 119 --------VPANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVY 189 (281)
Q Consensus 119 --------~~~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~ 189 (281)
.........++++ |+|||||||.||||+++|+++...........+++.++|++++.+|++|++|+...++
T Consensus 222 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~ 301 (640)
T d1ry2a_ 222 TEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVY 301 (640)
T ss_dssp HHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTH
T ss_pred ccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHH
Confidence 0000112236788 9999999999999999999988744555556678899999999999999999888889
Q ss_pred hhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcc
Q psy9113 190 GPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIR 267 (281)
Q Consensus 190 ~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~ 267 (281)
.+|..|+++++. ++.+...++..+++.++++++|.++ .+|.++..+.+.... .. ..++|++|+.++..|..
T Consensus 302 ~~l~~G~~~v~~--~~~~~~~~~~~~~~~i~~~~vt~~~---~~P~~~~~l~~~~~~-~~-~~~~l~sLr~v~~gG~~ 372 (640)
T d1ry2a_ 302 GPLLYGCATLVF--EGTPAYPNYSRYWDIIDEHKVTQFY---VAPTALRLLKRAGDS-YI-ENHSLKSLRCLGSVGEP 372 (640)
T ss_dssp HHHHHTSEEEEE--CSCTTSSCTTHHHHHHHHTTCSEEE---ECHHHHHHHTTSCTT-SS-SSCCCTTCCEEEECSSC
T ss_pred HHHHhCCEEEEe--cCCCCCCCHHHHHHHHHHhCccEEE---cChHHHHHHHhcccc-cc-ccCCCCceEEEEEeccc
Confidence 999999999998 5544556899999999999999977 556655554433222 22 45678888877666653
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=7.6e-35 Score=266.15 Aligned_cols=236 Identities=17% Similarity=0.136 Sum_probs=189.2
Q ss_pred eeccccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHH
Q psy9113 16 VDTFWQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTML 95 (281)
Q Consensus 16 ~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~l 95 (281)
..++|.+.|+.++|++.|+++||++|+++ .++++||+||.+++.++|+.|.++|+++||+|+++++|+++++++++
T Consensus 18 ~~~~~~~~tl~~~l~~~a~~~pd~~Al~~----~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~l 93 (536)
T d1mdba_ 18 KNGCWAGETFGDLLRDRAAKYGDRIAITC----GNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93 (536)
T ss_dssp HTTSSCSCCHHHHHHHHHHHHTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHCCCCeEEEE----CCEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHH
Confidence 45589999999999999999999999996 46899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeecCCCCCCcCC-------------------------------------------------------cC
Q psy9113 96 ACARIGAVHSIVVSKCSGDDMST-------------------------------------------------------VP 120 (281)
Q Consensus 96 A~~~~G~~~v~l~~~~~~~~~~~-------------------------------------------------------~~ 120 (281)
||+++|++++|+++.++.+++.+ .+
T Consensus 94 A~~~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (536)
T d1mdba_ 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEP 173 (536)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCCC
T ss_pred HHHHhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhcccCC
Confidence 99999999999999998887766 00
Q ss_pred -CCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhcc-Cce
Q psy9113 121 -ANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLAN-GAT 197 (281)
Q Consensus 121 -~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~-G~~ 197 (281)
.......++++ ++|||||||.||||++||+++.. ........+++.+++++++..|++|.+|+...++..+.. |.+
T Consensus 174 ~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~ 252 (536)
T d1mdba_ 174 VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIY-SLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGR 252 (536)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCE
T ss_pred cCCCccCccchHHhhhcccccccceecccccccccc-cccccccccccccccccccccccccccceeecccccccccccc
Confidence 00122346788 99999999999999999999999 788888888999999999999999999875555555555 555
Q ss_pred EEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 198 SVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 198 ~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
++.. + .+++..+++.+++++++.+. ..+.....+......... ....++.+..+|+.-.
T Consensus 253 ~~~~--~----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gG~~~~ 311 (536)
T d1mdba_ 253 VVLS--P----SPSPDDAFPLIEREKVTITA---LVPPLAMVWMDAASSRRD-DLSSLQVLQVGGAKFS 311 (536)
T ss_dssp EEEC--S----SSSHHHHHHHHHHHTCSEEE---ECHHHHHHHHHHHHHCCC-CCTTCCEEEEESSCCC
T ss_pred cccc--C----CCCHHHHHHHHhhhcccccc---ccchhhhhhhhhcccccc-ccCcceeEEEeccccc
Confidence 5555 3 67899999999999999966 333333444444333221 3334454555555433
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.8e-34 Score=264.23 Aligned_cols=231 Identities=15% Similarity=0.053 Sum_probs=184.4
Q ss_pred ccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhc
Q psy9113 22 TETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIG 101 (281)
Q Consensus 22 ~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G 101 (281)
+.|+.++|++.|+++||++|+++.+.++.+++||+||.+++.++|+.|.++|+++||+|+++++|+++++++++||+++|
T Consensus 10 ~~~l~~~l~~~a~~~pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 89 (534)
T d1v25a_ 10 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 89 (534)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 33899999999999999999998766666789999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCCCcCC-----------------------------------------------------cCCCchhhhc
Q psy9113 102 AVHSIVVSKCSGDDMST-----------------------------------------------------VPANSERERK 128 (281)
Q Consensus 102 ~~~v~l~~~~~~~~~~~-----------------------------------------------------~~~~~~~~~~ 128 (281)
++++|+++.++.+++.+ .........+
T Consensus 90 ~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (534)
T d1v25a_ 90 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPER 169 (534)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCCCCCCTT
T ss_pred cEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeecccccccccccccccccccccccccC
Confidence 99999999998887666 0011122235
Q ss_pred ccc-eeeeecCCCCCceEEEechhHHHHHH--HhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCC
Q psy9113 129 LKL-RKVVTGSTGKPKGVLHTTGGYLLYAA--TTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPG 205 (281)
Q Consensus 129 ~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~--~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~ 205 (281)
+++ ++|||||||.||||+++|+++.. .. ............+++++.+|++|.+++... +.++..|++.++. +
T Consensus 170 ~~a~i~~TSGTTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~-~~~~~~g~~~v~~--~- 244 (534)
T d1v25a_ 170 AACGMAYTTGTTGLPKGVVYSHRALVL-HSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP-YAATLVGAKQVLP--G- 244 (534)
T ss_dssp SEEEEEEECSSSSSCEEEEEEHHHHHH-HHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHH-HHHHHHTCEEEEC--T-
T ss_pred CcEEEEEecCCCCCccccccccchhhh-hhhhhhhhcccccccccccccccchhhhcccccc-ceeeeecceeeec--c-
Confidence 677 99999999999999999999976 33 334444566788999999999999998654 5566666666665 3
Q ss_pred ccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 206 EIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 206 ~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
..+++..+.+.++++++|.+. .+|.++..++....... .++++++.+...|.
T Consensus 245 --~~~~~~~~~~~~~~~~vt~~~---~~p~~~~~~~~~~~~~~----~~~~~lr~~~~gG~ 296 (534)
T d1v25a_ 245 --PRLDPASLVELFDGEGVTFTA---GVPTVWLALADYLESTG----HRLKTLRRLVVGGS 296 (534)
T ss_dssp --TCCSHHHHHHHHHHTTCCEEE---ECHHHHHHHHHHHHHHT----CCCSSCCEEEECSS
T ss_pred --ccccccccchhhhhccccccc---cCchhhhhhhhhhcccc----ccccceeEEEEecC
Confidence 267899999999999999976 55666666666655432 34555554444443
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=99.97 E-value=3e-32 Score=248.03 Aligned_cols=232 Identities=15% Similarity=0.088 Sum_probs=182.8
Q ss_pred ccccchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHH
Q psy9113 20 WQTETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACAR 99 (281)
Q Consensus 20 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~ 99 (281)
=++.||.++|+++|+++||++|+++ .++++||+||.++++++|+.|+++|+++||+|+++++|+++++++++||++
T Consensus 20 ~~~~tl~~l~~~~a~~~Pd~~Al~~----~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~ 95 (514)
T d1amua_ 20 PRDKTIHQLFEEQVSKRPNNVAIVC----ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 95 (514)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEE----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCCCCeEEEE----CCeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence 3567999999999999999999996 568999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEeecCCCCCCcCC------------------------------------------cCCCchhhhcccc-eeeee
Q psy9113 100 IGAVHSIVVSKCSGDDMST------------------------------------------VPANSERERKLKL-RKVVT 136 (281)
Q Consensus 100 ~G~~~v~l~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~-i~~TS 136 (281)
+|++++|+++.++.+++.+ .........++++ ++|||
T Consensus 96 ~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~a~i~~TS 175 (514)
T d1amua_ 96 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTS 175 (514)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSCCSCCCCCCCTTSEEEEEEEC
T ss_pred hCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccccccccccccCCCCCCcccceEEEEcc
Confidence 9999999999999988777 0011112346778 99999
Q ss_pred cCCCCCceEEEechhHHHHHHHhhhhhccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCccccccccccc
Q psy9113 137 GSTGKPKGVLHTTGGYLLYAATTHKYVFDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCTADVGW 216 (281)
Q Consensus 137 GTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~ 216 (281)
||||.||+|+++|.++.. .............+++++...|++|..|+ ..++.++..|+++++. +. ....+....+
T Consensus 176 GTTG~PK~v~~s~~~~~~-~~~~~~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~~~~~~~~--~~-~~~~~~~~~~ 250 (514)
T d1amua_ 176 GTTGNPKGTMLEHKGISN-LKVFFENSLNVTEKDRIGQFASISFDASV-WEMFMALLTGASLYII--LK-DTINDFVKFE 250 (514)
T ss_dssp -----CEEEEEESHHHHH-HHHHHHHTSCCCTTCEEEECSCTTSTHHH-HHHHHHHTTTCEEEEC--CH-HHHTCHHHHH
T ss_pred CCCCCccccccccccccc-ccccccccccccccccccceecccccccc-cccccccccccccccc--cc-ccccchhhhh
Confidence 999999999999999999 88888888899999999999999999997 4778889999999887 31 1234556677
Q ss_pred eeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCcceee
Q psy9113 217 ITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDIRMWC 270 (281)
Q Consensus 217 ~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~~~~~ 270 (281)
+.+..+.++.+. .++.... . . ......+++.+..+|+.-.....
T Consensus 251 ~~~~~~~~~~~~---~~~~~~~----~--~-~~~~~~~l~~~~~~G~~~~~~~~ 294 (514)
T d1amua_ 251 QYINQKEITVIT---LPPTYVV----H--L-DPERILSIQTLITAGSATSPSLV 294 (514)
T ss_dssp HHHHHTTCCEEE---ECHHHHT----T--S-CTTTCCSCSEEEEESSCCCHHHH
T ss_pred hhhhhhhccccc---ceeeecc----c--c-cccccccccEEEEecccCCHHHh
Confidence 888888888865 4444321 1 1 11144566666777766554433
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=99.97 E-value=1.2e-31 Score=241.97 Aligned_cols=230 Identities=18% Similarity=0.127 Sum_probs=182.7
Q ss_pred cchhhhhccCCCCCCCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHHHHHHHHHhcC
Q psy9113 23 ETGGHVLTPLPGCTPMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVVTMLACARIGA 102 (281)
Q Consensus 23 ~tl~~~l~~~a~~~pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~~~lA~~~~G~ 102 (281)
.|++++|++.|+++||++|+++. +.++++||+||.+++.++|+.|+++|+++||+|+++++|+++++++++||+++|+
T Consensus 2 ~ti~~~l~~~a~~~pd~~al~~~--~~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~ 79 (503)
T d3cw9a1 2 QTVNEMLRRAATRAPDHCALAVP--ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGA 79 (503)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEEG--GGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhCCCCeEEEEC--CCCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHHhCc
Confidence 58999999999999999999875 4567999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCCCCCCcCC-----------------------------------------------c-CCCchhhhcccc-ee
Q psy9113 103 VHSIVVSKCSGDDMST-----------------------------------------------V-PANSERERKLKL-RK 133 (281)
Q Consensus 103 ~~v~l~~~~~~~~~~~-----------------------------------------------~-~~~~~~~~~~~~-i~ 133 (281)
+++|+++.++.+++.+ . ......++++++ ++
T Consensus 80 v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~ 159 (503)
T d3cw9a1 80 VPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIF 159 (503)
T ss_dssp EEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEETTEECCCSCCCCCCCCCTTSEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhhhcccccCCccccccchhhhhhhhc
Confidence 9999999999987776 0 001122346778 99
Q ss_pred eeecCCCCCceEEEechhHHHHHHHhhhhh--ccCCCCCEEEEeCchhhhhhHhHHHHhhhccCceEEEecCCCcccccc
Q psy9113 134 VVTGSTGKPKGVLHTTGGYLLYAATTHKYV--FDYKPGDIYWCTADVGWITGHTYVVYGPLANGATSVIVSLPGEIYWCT 211 (281)
Q Consensus 134 ~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~--~~~~~~~~~l~~~pl~h~~gl~~~~~~~l~~G~~~v~~~~~~~~~~~~ 211 (281)
|||||||.||+|+++|+++.. ........ ......++.+..+|+.|..+.....+.+...++.+++. + .++
T Consensus 160 ~TSGTTG~pK~v~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~ 232 (503)
T d3cw9a1 160 YTSGTTGLPKAAIIPQRAAES-RVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVV--E----EFR 232 (503)
T ss_dssp EECCSSSSCEEEEEEGGGHHH-HHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEEC--S----SCC
T ss_pred ccccccccccccccccchhhh-hhhhccccccccccccccccccCccccccccccccccccccccccccc--c----ccC
Confidence 999999999999999999988 55554443 34456689999999988888777778888888888887 4 689
Q ss_pred ccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCCCc
Q psy9113 212 ADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSLDI 266 (281)
Q Consensus 212 ~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~g~ 266 (281)
+..++..+.+++++... .++.....++....... ....+++++.+...|.
T Consensus 233 ~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~Lr~i~~gG~ 282 (503)
T d3cw9a1 233 PVDALQLVQQEQVTSLF---ATPTHLDALAAAAAHAG--SSLKLDSLRHVTFAGA 282 (503)
T ss_dssp HHHHHHHHHHHTCCEEE---ECHHHHHHHHHHHHHTC--TTCCCTTCCEEEECSS
T ss_pred hHHhhhhhhhceeeccc---ccccccccccccccccc--ccccccceEEEEeccc
Confidence 99999999999999977 44444444333332222 2333444544444443
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=99.97 E-value=3.7e-31 Score=241.92 Aligned_cols=237 Identities=16% Similarity=0.097 Sum_probs=175.3
Q ss_pred eeccccccchhhhhccCCCCC---CCCCccccCCCCCCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEeCCcHHHHH
Q psy9113 16 VDTFWQTETGGHVLTPLPGCT---PMKPGAAGNDPDDYSRLTYKKLLEEVCKCANVLKSKGVQKGDRVAIYLPMVLEIVV 92 (281)
Q Consensus 16 ~~~~~~~~tl~~~l~~~a~~~---pd~~a~~~~~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~l~~~n~~~~~~ 92 (281)
+..-+++.|+.+.|.+.++++ |+.+|+.+ ...++++||+||.+++.++|+.|+++|+++||+|+++++|++++++
T Consensus 10 p~~p~~~~t~~~~l~~~~~~~~~~P~~~a~~d--~~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v 87 (541)
T d1lcia_ 10 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTD--AHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFM 87 (541)
T ss_dssp CSSCCCSSCHHHHHHHHHHHHHTSTTCEEEEE--TTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHH
T ss_pred CCCCCCCCCHHHHHHHHHHhhCCCCCeEEEEe--CCCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHH
Confidence 334455678999998888877 55555654 2456789999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCeEEEeecCCCCCCcCC--------------------------c---------------------------
Q psy9113 93 TMLACARIGAVHSIVVSKCSGDDMST--------------------------V--------------------------- 119 (281)
Q Consensus 93 ~~lA~~~~G~~~v~l~~~~~~~~~~~--------------------------~--------------------------- 119 (281)
+++||+++|++++|+++.++.+++.+ .
T Consensus 88 ~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (541)
T d1lcia_ 88 PVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTS 167 (541)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBEEHHHHHHH
T ss_pred HHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccchhhhhhhh
Confidence 99999999999999999998876655 0
Q ss_pred -----------CCCchhhhcccc-eeeeecCCCCCceEEEechhHHHHHHHhhhh---hccCCCCCEEEEeCchhhhhhH
Q psy9113 120 -----------PANSERERKLKL-RKVVTGSTGKPKGVLHTTGGYLLYAATTHKY---VFDYKPGDIYWCTADVGWITGH 184 (281)
Q Consensus 120 -----------~~~~~~~~~~~~-i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~---~~~~~~~~~~l~~~pl~h~~gl 184 (281)
.......+++++ ++|||||||.||+|+++|+++.. ....... .....++++++..+|++|..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 246 (541)
T d1lcia_ 168 HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACV-RFSHARDPIFGNQIIPDTAILSVVPFHHGFGM 246 (541)
T ss_dssp HSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHH-HHHHHTCTTTSCCCCTTCEEEECSCTTSHHHH
T ss_pred hccccccccccCccccCCCCceEEEEeeccccccccccccccchhhh-hhhhhhhhcccccccccccccccccccccccc
Confidence 000111225667 99999999999999999999887 4443333 3356788999999999999987
Q ss_pred hHHHHhhhccCceEEEecCCCccccccccccceeeeeeccceeccCCchhHHHHHHHHhhccccccccccchhhhhccCC
Q psy9113 185 TYVVYGPLANGATSVIVSLPGEIYWCTADVGWITGHTYVVYGPLANGATSVIVSETLKMLNTNFFCILYTISSLMWAGSL 264 (281)
Q Consensus 185 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~~~~~~~~~~ll~~~~~~~~~~~~~L~sl~~~g~~ 264 (281)
. ..+..+..++.++.. + ..+....+..+.++++|.++ .+|.++..++........ ....|+.+..+|+.
T Consensus 247 ~-~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~t~~~---~~p~~~~~~~~~~~~~~~-~~~~l~~v~~gG~~ 315 (541)
T d1lcia_ 247 F-TTLGYLICGFRVVLM--Y----RFEEELFLRSLQDYKIQSAL---LVPTLFSFFAKSTLIDKY-DLSNLHEIASGGAP 315 (541)
T ss_dssp H-HHHHHHHHTCEEEEC--S----SCCHHHHHHHHHHTTCSEEE---CCHHHHHHHHHCSCGGGS-CCTTCCEEECTTCC
T ss_pred c-ccccccccccccccc--c----ccccchhHHHHhhhhccccc---cCcccccccccccccccc-ccccceEEEecccc
Confidence 5 567777777777777 3 67888889999999999977 555556666665554332 23334444444444
Q ss_pred Cc
Q psy9113 265 DI 266 (281)
Q Consensus 265 g~ 266 (281)
-.
T Consensus 316 ~~ 317 (541)
T d1lcia_ 316 LS 317 (541)
T ss_dssp CC
T ss_pred cc
Confidence 33
|