Psyllid ID: psy9135
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1107 | 2.2.26 [Sep-21-2011] | |||||||
| Q9QZB7 | 417 | Actin-related protein 10 | yes | N/A | 0.315 | 0.836 | 0.356 | 9e-62 | |
| Q3ZBD2 | 417 | Actin-related protein 10 | yes | N/A | 0.311 | 0.827 | 0.367 | 3e-61 | |
| Q9NZ32 | 417 | Actin-related protein 10 | yes | N/A | 0.311 | 0.827 | 0.352 | 3e-60 | |
| Q9VQG2 | 238 | Gamma-secretase subunit A | no | N/A | 0.158 | 0.735 | 0.517 | 3e-39 | |
| Q96BI3 | 265 | Gamma-secretase subunit A | no | N/A | 0.168 | 0.705 | 0.432 | 4e-39 | |
| Q8BVF7 | 265 | Gamma-secretase subunit A | no | N/A | 0.168 | 0.705 | 0.427 | 9e-39 | |
| Q8JHE9 | 258 | Gamma-secretase subunit A | no | N/A | 0.165 | 0.709 | 0.476 | 2e-36 | |
| Q8C7N7 | 257 | Gamma-secretase subunit A | no | N/A | 0.158 | 0.680 | 0.435 | 5e-36 | |
| Q5RDM3 | 257 | Gamma-secretase subunit A | no | N/A | 0.158 | 0.680 | 0.427 | 4e-35 | |
| Q8WW43 | 257 | Gamma-secretase subunit A | no | N/A | 0.158 | 0.680 | 0.427 | 5e-35 |
| >sp|Q9QZB7|ARP10_MOUSE Actin-related protein 10 OS=Mus musculus GN=Actr10 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 141/396 (35%), Positives = 218/396 (55%), Gaps = 47/396 (11%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G +TK G G P+ I S +K +K + +Y + ++LY L EFI
Sbjct: 13 KTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMSKPIKVVQYNINTEELYSYLKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+VV+ESVL P+ +R TL +VLFK++EV S+L PSHL++L TLG
Sbjct: 73 HILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDP 914
+N+ +VLD GY E+ +LP+YEG+P+L W L L GG+++ + + L+++
Sbjct: 133 INSAMVLDCGYRESLVLPIYEGIPILNCWGALPL-GGKALHKELETQLLEQCTVDTGAAK 191
Query: 915 YIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA-------KNPDHKYPSGFMYPLK 967
+ ++ + ++EDIKV +CFV+ ++R +I A N P YPL
Sbjct: 192 GQSLPSVMGSVPEGVLEDIKVRTCFVSDLKRGLQIQAAKFNIDGNNERPTPPPNVDYPLD 251
Query: 968 NGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNT 1027
K + V G IR++ E+LFE D + ++AT+ILDSLL +C ++T
Sbjct: 252 GEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLL----------------QCPIDT 295
Query: 1028 RT--PEKLCCLVGWSNICCY-------------------KLFIKNFKFHEFPAKENYVAW 1066
R E L + G S + + L KNF+ H PAK N VAW
Sbjct: 296 RKQLAENLVIIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLGTKNFRIHTPPAKANCVAW 355
Query: 1067 LGGAIFAATES-YNKRAIQKDVYLNNNVIPDWCNLS 1101
LGGA+F A + R+I K+ Y IPDWC+L+
Sbjct: 356 LGGAVFGALQDILGSRSISKEYYNQTGRIPDWCSLN 391
|
Mus musculus (taxid: 10090) |
| >sp|Q3ZBD2|ARP10_BOVIN Actin-related protein 10 OS=Bos taurus GN=ACTR10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 218/400 (54%), Gaps = 55/400 (13%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G +TK G G P+ I S +K K + +Y + ++LY L EFI
Sbjct: 13 KTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIRVVQYNINTEELYSYLKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+VV+ESVL P+ +R TL +VLFK++EV S+L PSHL++L TLG
Sbjct: 73 HILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGG---QSVESH-IRSLLIDEIKALE 910
+N+ +VLD GY E+ +LP+YEG+PVL W L LGG + +E+ + +D A E
Sbjct: 133 INSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTGAAKE 192
Query: 911 NPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAK--NPDHKY-----PSGFM 963
P ++ ++ + I+EDIKV +CFV+ ++R I A N D P
Sbjct: 193 QSLPSVMG-----SIPEGILEDIKVRTCFVSDLKRGLNIQAAKFNIDGNTERPSPPPNVD 247
Query: 964 YPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRC 1023
YPL K + V G IR++ E+LFE D + ++AT+ILDSL+ +C
Sbjct: 248 YPLDGEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLM----------------QC 291
Query: 1024 WVNTRT--PEKLCCLVGWSNICCY-------------------KLFIKNFKFHEFPAKEN 1062
++TR E L + G S + + L K F+ H PAK N
Sbjct: 292 PIDTRKQLAENLVVIGGTSMLPGFLHRLLAEIRYLVEKPKYKKTLATKTFRIHTPPAKAN 351
Query: 1063 YVAWLGGAIFAATES-YNKRAIQKDVYLNNNVIPDWCNLS 1101
VAWLGGAIF A + R++ KD Y IPDWC+L+
Sbjct: 352 CVAWLGGAIFGALQDILGSRSVSKDYYNQTGRIPDWCSLN 391
|
Bos taurus (taxid: 9913) |
| >sp|Q9NZ32|ARP10_HUMAN Actin-related protein 10 OS=Homo sapiens GN=ACTR10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/400 (35%), Positives = 217/400 (54%), Gaps = 55/400 (13%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G +TK G G P+ I S +K K + +Y + ++LY L EFI
Sbjct: 13 KTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMPKPVRVVQYNINTEELYSYLKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+V++ESVL P+ +R TL +VLFK++EV S+L PSHL++L TLG
Sbjct: 73 HILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGG---QSVESH-IRSLLIDEIKALE 910
+N+ +VLD GY E+ +LP+YEG+PVL W L LGG + +E+ + +D A E
Sbjct: 133 INSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGGKALHKELETQLLEQCTVDTSVAKE 192
Query: 911 NPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA-------KNPDHKYPSGFM 963
P ++ ++ + ++EDIK +CFV+ ++R +I A N P
Sbjct: 193 QSLPSVMG-----SVPEGVLEDIKARTCFVSDLKRGLKIQAAKFNIDGNNERPSPPPNVD 247
Query: 964 YPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRC 1023
YPL K + + G IR++ E+LFE D + ++AT+ILDSL+ +C
Sbjct: 248 YPLDGEKILHILGSIRDSVVEILFEQDNEEQSVATLILDSLI----------------QC 291
Query: 1024 WVNTRT--PEKLCCLVGWSNICCY-------------------KLFIKNFKFHEFPAKEN 1062
++TR E L + G S + + L K F+ H PAK N
Sbjct: 292 PIDTRKQLAENLVVIGGTSMLPGFLHRLLAEIRYLVEKPKYKKALGTKTFRIHTPPAKAN 351
Query: 1063 YVAWLGGAIFAATES-YNKRAIQKDVYLNNNVIPDWCNLS 1101
VAWLGGAIF A + R++ K+ Y IPDWC+L+
Sbjct: 352 CVAWLGGAIFGALQDILGSRSVSKEYYNQTGRIPDWCSLN 391
|
Homo sapiens (taxid: 9606) |
| >sp|Q9VQG2|APH1_DROME Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 91/176 (51%), Positives = 120/176 (68%), Gaps = 1/176 (0%)
Query: 558 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQC 617
MT EF GCT AFGP A+F+ TI DPV++IIL+A+AF WLLSLL+SS+ + +I +
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60
Query: 618 NIIFGVVISVLCQEAFRYILYLILQKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 676
+ FGVV SV QEAFRYI+Y IL+ + GL V+ D DN + +AYVSGLG+G IS
Sbjct: 61 FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120
Query: 677 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 732
F+L+NVL +SGPGTMGLKG ++ F T++ LLH FWS++FF + N
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNN 176
|
Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch. It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Drosophila melanogaster (taxid: 7227) |
| >sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A OS=Homo sapiens GN=APH1A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 87/201 (43%), Positives = 122/201 (60%), Gaps = 14/201 (6%)
Query: 563 FLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQCN---- 618
F GCT AFGP A+FL T+ DP++VIILVA AF WL+SLLL+S+VWF++ + +
Sbjct: 6 FFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDA 65
Query: 619 ------IIFGVVISVLCQEAFRYILYLILQKSRGGLQYVS-DRNTMDNTYAMAYVSGLGY 671
+IFG +SVL QE FR+ Y +L+K+ GL +S D + + MAYVSGL +
Sbjct: 66 RLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSF 125
Query: 672 GTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIK 731
G IS FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E +
Sbjct: 126 GIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACE-R 184
Query: 732 NRTLKTGVVLDIGSKYTKYGI 752
R G+V +GS G+
Sbjct: 185 RRYWALGLV--VGSHLLTSGL 203
|
Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Homo sapiens (taxid: 9606) |
| >sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A OS=Mus musculus GN=Aph1a PE=2 SV=2 | Back alignment and function description |
|---|
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 86/201 (42%), Positives = 122/201 (60%), Gaps = 14/201 (6%)
Query: 563 FLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQCN---- 618
F GCT AFGP ++FL T+ DP++VIILVA AF WL+SLLL+S+VWF++ + +
Sbjct: 6 FFGCTFVAFGPAFSLFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVTDRSDA 65
Query: 619 ------IIFGVVISVLCQEAFRYILYLILQKSRGGLQYVS-DRNTMDNTYAMAYVSGLGY 671
+IFG +SVL QE FR+ Y +L+K+ GL +S D + + MAYVSGL +
Sbjct: 66 RLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSPISIRQMAYVSGLSF 125
Query: 672 GTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIK 731
G IS FS++N+L GPG +G+ G+S Y+ T++ T LLH FW +VFF E +
Sbjct: 126 GIISGVFSVINILADALGPGVVGIHGDSPYYFLTSAFLTAAIILLHTFWGVVFFDACE-R 184
Query: 732 NRTLKTGVVLDIGSKYTKYGI 752
R G+V +GS G+
Sbjct: 185 RRYWALGLV--VGSHLLTSGL 203
|
Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Mus musculus (taxid: 10090) |
| >sp|Q8JHE9|APH1B_DANRE Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 127/195 (65%), Gaps = 12/195 (6%)
Query: 558 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQC 617
MT F GCT AFGP IA+F+ TI +DP++VI L+A AF WL+SLLLSS+VWF+
Sbjct: 1 MTVAVFFGCTFIAFGPAIALFMFTIARDPLRVIFLIAGAFFWLVSLLLSSLVWFITVQIS 60
Query: 618 N----------IIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSDRNTMD-NTYAMAYV 666
N +IFGVV+SVL QEAFRY Y +L+K+ GL +S +TM + +AYV
Sbjct: 61 NKNSATQQRGLLIFGVVLSVLLQEAFRYGYYRLLKKANEGLLALSQEDTMPISMRQLAYV 120
Query: 667 SGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFR 726
SGLG+G +S AFS++N+L GPGT+G+ GESQ++ +++ T LLH+FW +VFF
Sbjct: 121 SGLGFGFMSGAFSVVNILSDSLGPGTVGIHGESQHYFISSAFMTLAIILLHMFWGVVFFE 180
Query: 727 GVEIKNRTLKTGVVL 741
E + R G V+
Sbjct: 181 ACE-RQRWWALGAVV 194
|
Essential subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors. It may represent a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Danio rerio (taxid: 7955) |
| >sp|Q8C7N7|APH1B_MOUSE Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 81/186 (43%), Positives = 115/186 (61%), Gaps = 11/186 (5%)
Query: 558 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQC 617
MT F GC AFGP +A+++ TI DP++VI L+A AF WL+SLLLSS+ WF++R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLRVIFLIAGAFFWLVSLLLSSVFWFLVRVIT 60
Query: 618 N----------IIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSDRNTMDNTYAMAYVS 667
+ +IFGV++SV QE FR Y +L+K+ GL+ ++ T + +AYVS
Sbjct: 61 DNRDGPVQNYLLIFGVLLSVCIQELFRLAYYKLLKKASEGLKSINPEETAPSMRLLAYVS 120
Query: 668 GLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRG 727
GLG+G +S FS +N L GPGT+G+ G+S F ++ T +LHVFW +VFF G
Sbjct: 121 GLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSPQFFLNSAFMTLVVIMLHVFWGVVFFDG 180
Query: 728 VEIKNR 733
E KN+
Sbjct: 181 CE-KNK 185
|
Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A. Mus musculus (taxid: 10090) |
| >sp|Q5RDM3|APH1B_PONAB Gamma-secretase subunit APH-1B OS=Pongo abelii GN=APH1B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 112/185 (60%), Gaps = 10/185 (5%)
Query: 558 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQC 617
MT F GC AFGP +A+++ TI +P+++I L+A AF WL+SLL+SS+VWF+ R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60
Query: 618 N----------IIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSDRNTMDNTYAMAYVS 667
+ +IFG +SV QE FR+ Y +L+K+ GL+ ++ T + +AYVS
Sbjct: 61 DNKDGPTQKYLLIFGTFVSVYIQEMFRFAYYRLLKKASEGLKSINPGETAPSMRLLAYVS 120
Query: 668 GLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRG 727
GLG+G +S FS +N L GPGT+G+ G+S F ++ T LLHVFW IVFF G
Sbjct: 121 GLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFDG 180
Query: 728 VEIKN 732
E K
Sbjct: 181 CEKKK 185
|
Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A. Pongo abelii (taxid: 9601) |
| >sp|Q8WW43|APH1B_HUMAN Gamma-secretase subunit APH-1B OS=Homo sapiens GN=APH1B PE=1 SV=3 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 112/185 (60%), Gaps = 10/185 (5%)
Query: 558 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQC 617
MT F GC AFGP +A+++ TI +P+++I L+A AF WL+SLL+SS+VWF+ R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60
Query: 618 N----------IIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSDRNTMDNTYAMAYVS 667
+ +IFG +SV QE FR+ Y +L+K+ GL+ ++ T + +AYVS
Sbjct: 61 DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRLLAYVS 120
Query: 668 GLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRG 727
GLG+G +S FS +N L GPGT+G+ G+S F ++ T LLHVFW IVFF G
Sbjct: 121 GLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQFFLYSAFMTLVIILLHVFWGIVFFDG 180
Query: 728 VEIKN 732
E K
Sbjct: 181 CEKKK 185
|
Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral proteins such as Notch receptors and APP (beta-amyloid precursor protein). It probably represents a stabilizing cofactor for the presenilin homodimer that promotes the formation of a stable complex. Probably present in a minority of gamma-secretase complexes compared to APH1A. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1107 | ||||||
| 332031112 | 360 | Actin-related protein 10 [Acromyrmex ech | 0.298 | 0.916 | 0.420 | 3e-78 | |
| 307190382 | 376 | Actin-related protein 10 [Camponotus flo | 0.303 | 0.893 | 0.415 | 5e-77 | |
| 299764400 | 376 | actin related protein 11 [Nasonia vitrip | 0.308 | 0.906 | 0.433 | 7e-77 | |
| 307207066 | 376 | Actin-related protein 10 [Harpegnathos s | 0.319 | 0.941 | 0.417 | 9e-77 | |
| 340721374 | 377 | PREDICTED: actin-related protein 10-like | 0.314 | 0.923 | 0.441 | 2e-76 | |
| 350406661 | 377 | PREDICTED: actin-related protein 10-like | 0.313 | 0.920 | 0.442 | 4e-76 | |
| 328787167 | 377 | PREDICTED: actin-related protein 10 [Api | 0.308 | 0.907 | 0.426 | 1e-75 | |
| 380015827 | 377 | PREDICTED: actin-related protein 10-like | 0.306 | 0.899 | 0.425 | 5e-75 | |
| 383849990 | 371 | PREDICTED: actin-related protein 10-like | 0.311 | 0.929 | 0.437 | 1e-74 | |
| 91081503 | 370 | PREDICTED: similar to actin 3 isoform, p | 0.315 | 0.943 | 0.417 | 2e-74 |
| >gi|332031112|gb|EGI70689.1| Actin-related protein 10 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/388 (42%), Positives = 243/388 (62%), Gaps = 58/388 (14%)
Query: 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIF 104
VV DIGS YTK+G G P+G I+++V+ + K+R + +Y+DA+DLY LL++F+ +F
Sbjct: 2 VVFDIGSAYTKFGYAGEVSPRGIIRTEVRCSESKKIRRIIDYRDAEDLYQLLVDFLHLLF 61
Query: 105 FKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 164
FKY V SPKD RI+++ES L T +R+TLAKV+F+H+E+ S+L++PSHL ++ TLG++T
Sbjct: 62 FKYVVISPKDARILLLESPLAVTSFRDTLAKVMFRHFEIGSVLFLPSHLATISTLGIDTA 121
Query: 165 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKAL 224
LVLD+GY EATL+P++EG+P+L AW+ L LGGQ + ++++
Sbjct: 122 LVLDVGYQEATLIPIFEGIPILKAWQALPLGGQIIHENLKK------------------- 162
Query: 225 ENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKN-----PDHKYPSGFMY 279
Y D+ +LS++I+EDIKV +CFVTT+ERSA++ +N PD YP
Sbjct: 163 -----YFRDTSDL-DLSENIVEDIKVRTCFVTTLERSAKLGTENALTPPPDVTYP----- 211
Query: 280 PLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLL------------SVASSDG 327
K+I + G IRE AFEVL+E D D L+++T+ILD+++ ++ G
Sbjct: 212 ---GIKRIVIPGEIREKAFEVLWERDNDNLSLSTMILDAIVKCPLDTRRILAKNIILVGG 268
Query: 328 REETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIF 387
T+ F +R +L L+ S++ KL +++FKFH P+K NY AWLGGAIF
Sbjct: 269 TTMTKGFA------SRLKSELLALIE-SDLYKTKLKVESFKFHTAPSKPNYTAWLGGAIF 321
Query: 388 AATESYNKRAIQKDVYLNNNVIPDWCNL 415
+ T+ R + KDVYL N +PDW NL
Sbjct: 322 STTD-LPLRCLTKDVYLKTNRVPDWSNL 348
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307190382|gb|EFN74441.1| Actin-related protein 10 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 159/383 (41%), Positives = 239/383 (62%), Gaps = 47/383 (12%)
Query: 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIF 104
+V DIGS YTK+G G P+G I+++V+ P + K+R + ++ D +DLY LL+EF+ +F
Sbjct: 17 IVFDIGSAYTKFGYAGEASPRGIIRTEVRCPESKKIRRIIDHTDVEDLYQLLVEFLHLLF 76
Query: 105 FKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 164
FKY V SPKD RI+++ES L T +R+T+AKV+FKH+EV S+L++PSHL ++ TLG++T
Sbjct: 77 FKYVVVSPKDARILLLESPLAVTSFRDTIAKVMFKHFEVGSILFLPSHLATISTLGIDTA 136
Query: 165 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKAL 224
LVLD+GY EATL+P++EG+PVL AW+ L LGGQ V ++RR
Sbjct: 137 LVLDVGYQEATLIPIFEGIPVLKAWQALPLGGQIVHENLRR------------------- 177
Query: 225 ENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNG 284
Y + + +LS+ ++EDIKV +CFVTT+ERS ++ K+ P MYP
Sbjct: 178 -----YFNDMSNDIDLSEKVLEDIKVRTCFVTTLERSTKLGTKDAPTP-PPDVMYP--GV 229
Query: 285 KKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLL------------SVASSDGREETQ 332
++I ++G IRE AFE+L+E D D L+++T+ILD+++ ++ G T+
Sbjct: 230 QRILITGEIREKAFEILWERDNDNLSLSTMILDAIVKCPLDMRRVLAENIILVGGTTMTK 289
Query: 333 YFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATES 392
F +R +L LV +++ KL I++FKFH P+K NY WLGGAIF T+
Sbjct: 290 GFA------SRLKSELLALV-QNDLYKNKLKIQSFKFHTAPSKPNYTVWLGGAIFGTTD- 341
Query: 393 YNKRAIQKDVYLNNNVIPDWCNL 415
R + K++YL N +PDW +L
Sbjct: 342 LPLRCLTKEIYLKTNRVPDWSSL 364
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|299764400|ref|NP_001177675.1| actin related protein 11 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 295 bits (756), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 164/378 (43%), Positives = 226/378 (59%), Gaps = 37/378 (9%)
Query: 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIF 104
++ DIGS YTKYG G P+G I+++VK P + + R ++ YKD DDLY LL+EF+ IF
Sbjct: 17 IIFDIGSAYTKYGYAGEAAPRGIIRTEVKCPESKEFRKIFSYKDEDDLYQLLVEFLHYIF 76
Query: 105 FKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 164
FK V SPKD RIV++ES L P+ +RNTL KV+F+H+EV SL+ +P+HLV++ TLG++T
Sbjct: 77 FKRTVISPKDIRIVILESPLIPSKFRNTLVKVMFRHFEVGSLMVLPAHLVTISTLGMDTA 136
Query: 165 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG-QSVESHIRSLLIDEIKA 223
+VLD+GY EATL+PV+EGVP+L AW+ L L ++V I +G Q V S
Sbjct: 137 MVLDVGYEEATLIPVFEGVPILKAWQALPLASKAVHKCISKGLQDVLSE----------- 185
Query: 224 LENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKN 283
+ L++ +IEDIKV +CFVTTMERSA++ NP PS Y
Sbjct: 186 --------------KELNEKLIEDIKVQTCFVTTMERSAKLETDNPPTPPPSVKYY---T 228
Query: 284 GKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYF------PFR 337
+ + G IRE A+EVL+E D D L++ T+ILD+L+ R+ +
Sbjct: 229 TRTFEIPGIIREKAYEVLWERDNDNLSLPTMILDALIKCPVDTRRQLAENILLIGGTTMA 288
Query: 338 CWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRA 397
+R +L LV S + KL ++ FKFH P+K NY AWLGGAIF + R
Sbjct: 289 KGFASRLKSELLHLVN-SELYAEKLKVRTFKFHSAPSKPNYTAWLGGAIFGIAD-LPSRC 346
Query: 398 IQKDVYLNNNVIPDWCNL 415
I K+ YL N +PDW NL
Sbjct: 347 ISKENYLEYNRVPDWVNL 364
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307207066|gb|EFN84875.1| Actin-related protein 10 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 164/393 (41%), Positives = 241/393 (61%), Gaps = 39/393 (9%)
Query: 724 FFRGVE-IKNRTLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKD 782
RG E ++ + K VV DIGS YTK+G G P+G ++++V+ P T K+R + ++ D
Sbjct: 1 MLRGYEGVRYISDKQMVVFDIGSAYTKFGYAGETSPRGIVRTEVRCPETKKIRRIIDHTD 60
Query: 783 ADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLY 842
+DLY LL+EF+ +FFKY V SPKD RI+++ES L T +R+TLAKV+F+H+EV S+L+
Sbjct: 61 VEDLYQLLVEFLHLLFFKYVVVSPKDTRIMILESPLAATRFRDTLAKVMFRHFEVGSMLF 120
Query: 843 VPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLL 902
+PSHL ++ TLG++T LVLD+GY EATL+P++EG+P+L AW+ L L GGQ+V +I+
Sbjct: 121 LPSHLATISTLGIDTALVLDVGYQEATLIPIFEGIPILKAWQALPL-GGQTVHDNIKRYF 179
Query: 903 IDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGF 962
+ LE LS+ ++EDIKV +CFVTT+ERS ++ ++ P
Sbjct: 180 NGTLAGLE--------------LSEKVLEDIKVRTCFVTTLERSTKLGTEDTPSP-PPAV 224
Query: 963 MYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLL------------SVASS 1010
YP I V G IRE AFE+L+E D D L++ T+ILD+++ ++
Sbjct: 225 KYP--GVTSILVPGEIREKAFEILWERDNDNLSLPTMILDAIVKCPLDTRCALAENIILI 282
Query: 1011 DGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGA 1070
G + F +R +L LV S++ KL +++F+FH P+K NY AWLGGA
Sbjct: 283 GGTTMAKGF------ASRLKSELLTLVA-SDLYKNKLKVQSFQFHTAPSKPNYTAWLGGA 335
Query: 1071 IFAATESYNKRAIQKDVYLNNNVIPDWCNLSVN 1103
IF T+ R + K+VYL N +PDW NL N
Sbjct: 336 IFGTTD-LPLRCLTKEVYLKTNRVPDWSNLVDN 367
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340721374|ref|XP_003399096.1| PREDICTED: actin-related protein 10-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 294 bits (753), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 165/374 (44%), Positives = 230/374 (61%), Gaps = 26/374 (6%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 795
K V+ DIGS YTK+G G P+G I++++K P T +LR +Y+YKD +DLY LL+EF+
Sbjct: 14 KQMVIFDIGSAYTKFGYAGEPTPRGIIRTEIKCPETRELRRIYDYKDTEDLYQLLVEFLH 73
Query: 796 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 855
+FF++ V SPKD RIV++ES+L PT +RNTL KVLF+H+E+ SL+ +P+HL ++ TLG+
Sbjct: 74 ALFFRHVVISPKDARIVILESLLAPTQFRNTLVKVLFRHFEIGSLMLLPTHLATISTLGI 133
Query: 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPY 915
N+ LVLD+GY EATL+P+YEG PVL AW+ L L GQ V HI K L+ P
Sbjct: 134 NSALVLDVGYKEATLIPIYEGEPVLKAWQALPL-AGQVVHEHI-------AKFLKEIYPN 185
Query: 916 IVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVS 975
+ N+++ +EDIKV +CFVTTMERS+++ + K P YP K I +
Sbjct: 186 V-------NITEKHVEDIKVRTCFVTTMERSSKLGTAHAP-KPPPAVKYP--GIKSINIP 235
Query: 976 GHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYF------PFRCWVNTRT 1029
G +RE AFEVL+E D D L+I T+ILD+++ R + +R
Sbjct: 236 GEVREKAFEVLWERDNDNLSIPTMILDAIIQCPIDIRRTLAENILLIGGTTMAKGFASRL 295
Query: 1030 PEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYL 1089
+L LV SN+ KL I+ F FH P+K NY AWLGGAI+ T R + K+ YL
Sbjct: 296 KSELLTLVK-SNLYSEKLKIQTFMFHTAPSKPNYTAWLGGAIY-GTVDLPLRCLTKENYL 353
Query: 1090 NNNVIPDWCNLSVN 1103
+ +PDW +L N
Sbjct: 354 KFDRVPDWVSLIDN 367
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350406661|ref|XP_003487842.1| PREDICTED: actin-related protein 10-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 166/375 (44%), Positives = 231/375 (61%), Gaps = 28/375 (7%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 795
K V+ DIGS YTK+G G P+G I++++K P T +LR +Y+YKD +DLY LL+EF+
Sbjct: 14 KQMVIFDIGSAYTKFGYAGEPTPRGIIRTEIKCPETRELRRIYDYKDTEDLYQLLVEFLH 73
Query: 796 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 855
IFF++ V SPKD RIV++ES+L PT +RNTL KVLF+H+E+ SL+ +P+HL ++ TLG+
Sbjct: 74 AIFFRHVVISPKDARIVILESLLAPTQFRNTLVKVLFRHFEIGSLMLLPTHLATVSTLGI 133
Query: 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPY 915
N+ LVLD+GY EATL+P+YEG PVL AW+ L L GGQ V + +K L P
Sbjct: 134 NSALVLDVGYKEATLIPIYEGEPVLKAWQALPL-GGQVVHERL-------MKFLRKIYPN 185
Query: 916 IVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA-AKNPDHKYPSGFMYPLKNGKKIPV 974
+ N+++ +EDIKV +CFVTTMERS+++ A P+ P YP K I +
Sbjct: 186 V-------NITEKHVEDIKVRTCFVTTMERSSKLGTAHAPEP--PPAVKYP--GIKSINI 234
Query: 975 SGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYF------PFRCWVNTR 1028
G +RE AFEVL+E D D L+I T+ILD+++ R + +R
Sbjct: 235 PGEVREKAFEVLWERDNDNLSIPTMILDAIVQSPIDIRRTLAENILLIGGTTMAKGFASR 294
Query: 1029 TPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
+L LV SN+ KL I+ F FH P+K NY AWLGGAI+ T R + K+ Y
Sbjct: 295 LKSELLTLVK-SNLYSEKLKIRTFMFHTAPSKPNYTAWLGGAIY-GTVDLPLRCLTKENY 352
Query: 1089 LNNNVIPDWCNLSVN 1103
L + +PDW +L N
Sbjct: 353 LKLDRVPDWVSLIDN 367
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328787167|ref|XP_396595.2| PREDICTED: actin-related protein 10 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 162/380 (42%), Positives = 240/380 (63%), Gaps = 38/380 (10%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 795
K V+ DIGS YTK+G G P+G I++++K P T +LR +Y+YK+ +DLY LL+EF+
Sbjct: 14 KQMVIFDIGSAYTKFGYAGEPTPRGIIRTEIKCPETKELRRIYDYKNTEDLYQLLVEFLH 73
Query: 796 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 855
+FF++ V SPKD RIVV+ES+L+PT +RNTLAKVLF+H+E+ SL+ +P+HL ++ TLG+
Sbjct: 74 ALFFRHVVLSPKDARIVVLESLLSPTQFRNTLAKVLFRHFEIGSLMLLPTHLATISTLGI 133
Query: 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPY 915
N+ LVLD+GY EATL+P++EG P+L AW+ L L GGQ V ++ +K+L+ P
Sbjct: 134 NSALVLDVGYKEATLIPIFEGEPILKAWQALPL-GGQVVHEYL-------MKSLKELYPN 185
Query: 916 IVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVS 975
+ ++++ ++EDIKV +CFVTT+ERS ++ K + P YP K I +
Sbjct: 186 V-------DVTEKMVEDIKVRTCFVTTLERSVKLGTKEAPNP-PPFVKYP--GVKSIDIP 235
Query: 976 GHIRETAFEVLFELDLDMLNIATIILDSLL------------SVASSDGREETQYFPFRC 1023
G +RE AFEVL+E D D L++ T+IL++++ ++ G T+ F
Sbjct: 236 GEVREKAFEVLWERDNDNLSLPTMILNAIMQCPIDVRRVLAENILLIGGTTMTKGF---- 291
Query: 1024 WVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAI 1083
+R +L LV S++ KL I+ F FH P+K NY AWLGGAIF T R +
Sbjct: 292 --ASRLKSELLSLVR-SDLYSEKLKIQKFMFHTAPSKPNYTAWLGGAIF-GTVDLPLRCL 347
Query: 1084 QKDVYLNNNVIPDWCNLSVN 1103
K+ YL ++ +PDW NL N
Sbjct: 348 TKENYLKSDRVPDWVNLIDN 367
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380015827|ref|XP_003691896.1| PREDICTED: actin-related protein 10-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 289 bits (740), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/383 (42%), Positives = 241/383 (62%), Gaps = 44/383 (11%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 795
K V+ DIGS YTK+G G P+G I++++K P T +LR +Y+YK+ +DLY LL+EF+
Sbjct: 14 KQMVIFDIGSAYTKFGYAGEPTPRGIIRTEIKCPETKELRKIYDYKNTEDLYQLLVEFLH 73
Query: 796 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 855
+FF++ V SPKD RIVV+ES+L+PT +RNTLAKVLF+H+E+ SL+ +P+HL ++ TLG+
Sbjct: 74 ALFFRHVVLSPKDARIVVLESLLSPTQFRNTLAKVLFRHFEIGSLMLLPTHLATISTLGI 133
Query: 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPY 915
N+ LVLD+GY EATL+P++EG P+L AW+ L L GGQ V ++ +K+L+ P
Sbjct: 134 NSALVLDVGYKEATLIPIFEGEPILKAWQALPL-GGQVVHEYL-------MKSLKELYPN 185
Query: 916 IVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA---AKNPDHKYPSGFMYPLKNGKKI 972
+ ++++ ++EDIKV +CFVTT+ERS ++ A NP P YP K I
Sbjct: 186 V-------DVTEKMVEDIKVRTCFVTTLERSVKLGTTEAPNP----PPFVKYP--GVKSI 232
Query: 973 PVSGHIRETAFEVLFELDLDMLNIATIILDSLL------------SVASSDGREETQYFP 1020
+ G +RE AFE+L+E D D L++ T+IL++++ ++ G T+ F
Sbjct: 233 DIPGEVREKAFEILWERDNDNLSLPTMILNAIMQCPIDVRRVLAENILLIGGTTMTKGF- 291
Query: 1021 FRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNK 1080
+R +L LV S++ KL I+ F FH P+K NY AWLGGAIF T
Sbjct: 292 -----ASRLKSELLNLVR-SDLYSEKLKIQKFMFHTAPSKPNYTAWLGGAIF-GTVDLPL 344
Query: 1081 RAIQKDVYLNNNVIPDWCNLSVN 1103
R + K+ YL ++ +PDW NL N
Sbjct: 345 RCLTKENYLKSDRVPDWVNLIDN 367
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383849990|ref|XP_003700611.1| PREDICTED: actin-related protein 10-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 165/377 (43%), Positives = 231/377 (61%), Gaps = 32/377 (8%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 795
K V+ DIGS YTK+G G P+G I++++K T +LR +Y+YKDA+DLY LL++F+
Sbjct: 8 KQMVIFDIGSAYTKFGYAGEVTPRGIIRTEIKCSETKELRKIYDYKDAEDLYQLLVDFLH 67
Query: 796 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 855
+FF++ V PKD RIVV+ES L T++R+TLAKVLF+H+E+ SL+ +P HL ++ TLGV
Sbjct: 68 ALFFRHVVICPKDARIVVLESPLCTTLFRDTLAKVLFRHFEIGSLMLLPIHLATISTLGV 127
Query: 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPY 915
NT LVLD+GY EATL+P++EGV +L AW+ L L G Q V ++ IK+L+ P
Sbjct: 128 NTALVLDVGYKEATLIPIFEGVSILKAWQALPL-GSQIVHENL-------IKSLKEVSPN 179
Query: 916 IVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA---AKNPDHKYPSGFMYPLKNGKKI 972
+ ++S+ ++EDIKV +CFVTT+ERS ++ A NP P YP K I
Sbjct: 180 V-------DISEKLVEDIKVRTCFVTTLERSNKLGTPEAPNP----PPAVKYP--GIKSI 226
Query: 973 PVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNT----- 1027
+ G +RE A+E L+E D D L+I T+ILD+LL R +
Sbjct: 227 NIPGEVREKAYEALWERDNDNLSIPTMILDALLQCPIDTRRVLAENILLIGGTTMAKGFM 286
Query: 1028 -RTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKD 1086
R +L L+ SN+ KL I+ FKFH P+K NY AWLGGAIF T R + K+
Sbjct: 287 GRLKSELSVLIK-SNLYSEKLKIRTFKFHTAPSKPNYTAWLGGAIF-GTIDLPLRCLTKE 344
Query: 1087 VYLNNNVIPDWCNLSVN 1103
YL +N +PDW +L N
Sbjct: 345 NYLKSNRVPDWASLVDN 361
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91081503|ref|XP_974574.1| PREDICTED: similar to actin 3 isoform, putative [Tribolium castaneum] gi|270006151|gb|EFA02599.1| hypothetical protein TcasGA2_TC008318 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 288 bits (736), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 155/371 (41%), Positives = 224/371 (60%), Gaps = 22/371 (5%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIF 798
VVLDIG+ YTK+G G + P+ I+S+V+ TN++R ++++KD DLY LL++FI ++
Sbjct: 13 VVLDIGAAYTKFGFSGEYAPRCIIRSEVRCKKTNQVRRIFDFKDEQDLYDLLVDFIHTLY 72
Query: 799 FKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 858
FKY + SPKDK IVVVES+L+PT++R TLAKVLF HYE+ +L VPSHLVSL TLG T
Sbjct: 73 FKYALFSPKDKPIVVVESLLSPTLFRETLAKVLFVHYEISMMLIVPSHLVSLSTLGAETA 132
Query: 859 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVT 918
LVLD+GY EA +PV G+PV+ AW+ L L G Q++ +++R+LL E
Sbjct: 133 LVLDVGYIEAVAIPVCFGLPVIHAWQALPL-GAQAIHNNLRTLLSSENTG---------- 181
Query: 919 VEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHI 978
+ L +++IEDIKV CFVT +R+ + PD + YP+ I +SG +
Sbjct: 182 ---INQLPETVIEDIKVRCCFVTKQKRAEQFNLAKPDITFAPEVKYPIGGSDIITISGKV 238
Query: 979 RETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYF------PFRCWVNTRTPEK 1032
RE +E+L++ D D L+++T+ILD++L V + + R ++
Sbjct: 239 REKVYEILYDEDNDHLSLSTMILDAILKVDMHLRNQLAENILLIGGSVMAPGFKARLKDE 298
Query: 1033 LCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNN 1092
L + + KL IK FKFH P KENY AWLGG I+ ATE +A+ ++ Y N
Sbjct: 299 LHKQLKYERY--KKLRIKTFKFHSPPCKENYAAWLGGGIYGATEVLGMKALTREKYFLEN 356
Query: 1093 VIPDWCNLSVN 1103
+PDW N+ N
Sbjct: 357 RLPDWPNMRDN 367
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1107 | ||||||
| ZFIN|ZDB-GENE-040426-768 | 415 | actr10 "actin-related protein | 0.328 | 0.877 | 0.366 | 5.3e-68 | |
| RGD|1306515 | 417 | Actr10 "actin-related protein | 0.331 | 0.880 | 0.384 | 5e-65 | |
| MGI|MGI:1891654 | 417 | Actr10 "ARP10 actin-related pr | 0.331 | 0.880 | 0.379 | 1.1e-64 | |
| UNIPROTKB|Q3ZBD2 | 417 | ACTR10 "Actin-related protein | 0.331 | 0.880 | 0.381 | 1.8e-64 | |
| UNIPROTKB|E2RLP1 | 417 | ACTR10 "Uncharacterized protei | 0.331 | 0.880 | 0.376 | 8e-64 | |
| UNIPROTKB|Q9NZ32 | 417 | ACTR10 "Actin-related protein | 0.329 | 0.875 | 0.372 | 2.8e-63 | |
| FB|FBgn0031050 | 378 | Arp10 "Actin-related protein 1 | 0.320 | 0.939 | 0.356 | 3.3e-60 | |
| FB|FBgn0031458 | 238 | aph-1 "anterior pharynx defect | 0.158 | 0.735 | 0.443 | 6.2e-33 | |
| ZFIN|ZDB-GENE-031118-31 | 258 | aph1b "anterior pharynx defect | 0.165 | 0.709 | 0.394 | 1e-32 | |
| ZFIN|ZDB-GENE-050913-96 | 253 | zgc:114200 "zgc:114200" [Danio | 0.155 | 0.679 | 0.377 | 6.6e-28 |
| ZFIN|ZDB-GENE-040426-768 actr10 "actin-related protein 10 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 5.3e-68, Sum P(2) = 5.3e-68
Identities = 139/379 (36%), Positives = 228/379 (60%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G+ YTK G G P+ I S++K P + ++ + ++ + ++LY +L EFI
Sbjct: 13 KTAVVIDLGAAYTKCGFAGETGPRFIIPSEIKHPGSQEVVAVVQFNINTEELYTILKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+VV+ES+L P+ +R+TL++VLF+H+EV S+L+ PSHL+S+ TLG
Sbjct: 73 HLLYFRHLLVNPRDRRVVVIESILCPSHYRDTLSRVLFRHFEVPSVLFAPSHLMSIMTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDP 914
+ + LV+D GY+E +LP+YEG+P+L AW+ L +GG +++ ++SLL ++ +
Sbjct: 133 LQSALVMDCGYTETLVLPIYEGIPILSAWEALPMGG-KAIHKELQSLLSEQCTVDTDSST 191
Query: 915 YIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA-AK-NPDHKYPS---GFMYPLKNG 969
+ + ++ + ++EDIKV +CFV+ ++R +I AK N D + P+ YPL
Sbjct: 192 GLQLPSVISHIPEDVVEDIKVRTCFVSDLQRGLKIQEAKFNTDAERPAPPPDVDYPLDGQ 251
Query: 970 KKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRT 1029
K + V G IR++ E+LFE D + +IAT++LD+L+ D R+
Sbjct: 252 KILHVKGFIRDSVAEMLFEQDNEEKSIATLLLDTLVK-CPIDTRKVLSENLLIIGGTAML 310
Query: 1030 PEKLCCLVGWSNICCYK------LFIKNFKFHEFPAKENYVAWLGGAIFAATESY-NKRA 1082
P L L+ K L K+F+ H PAK N AWLGGAIF A + R+
Sbjct: 311 PGFLHRLLAEIRSLVEKPKYRDALATKSFRIHSPPAKPNCTAWLGGAIFGALQDILGSRS 370
Query: 1083 IQKDVYLNNNVIPDWCNLS 1101
+ +D Y + IPDWC LS
Sbjct: 371 VSRDYYNHTGRIPDWCCLS 389
|
|
| RGD|1306515 Actr10 "actin-related protein 10 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 5.0e-65, Sum P(2) = 5.0e-65
Identities = 148/385 (38%), Positives = 224/385 (58%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G +TK G G P+ I S +K +K + +Y + ++LY L EFI
Sbjct: 13 KTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMSKPIKVVQYNINTEELYSYLKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+VV+ESVL P+ +R TL +VLFK++EV S+L PSHL++L TLG
Sbjct: 73 HILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDP 914
+N+ +VLD GY E+ +LP+YEG+PVL W L LGG +++ + + L+++
Sbjct: 133 INSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGG-KALHKELETQLLEQCTVDTGAAK 191
Query: 915 YIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEI-AAK-NPD--HKYPS---GFMYPLK 967
+ ++ +S++EDIKV +CFV+ ++R +I AAK N D ++ PS YPL
Sbjct: 192 GQSLPSVMGSVPESVLEDIKVRTCFVSDLQRGLQIQAAKFNIDGNNERPSPPPNVDYPLD 251
Query: 968 NGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNT 1027
K + V G IR++ E+LFE D + ++AT+ILDSLL D R++ +
Sbjct: 252 GEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLLQ-CPVDTRKQLAENLVIIGGTS 310
Query: 1028 RTPEKLCCLVGWSNICC----YK--LFIKNFKFHEFPAKENYVAWLGGAIFAATESY-NK 1080
P L L+ YK L KNF+ H PAK N VAWLGGA+F A +
Sbjct: 311 MLPGFLHRLLAEIRYLVEKPKYKKTLGTKNFRIHTPPAKANCVAWLGGAVFGALQDILGS 370
Query: 1081 RAIQKDVYLNNNVIPDWCNLSVNLP 1105
R+I K+ Y PDWC+L+ N P
Sbjct: 371 RSISKEYYNQTGRTPDWCSLN-NPP 394
|
|
| MGI|MGI:1891654 Actr10 "ARP10 actin-related protein 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
Identities = 146/385 (37%), Positives = 221/385 (57%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G +TK G G P+ I S +K +K + +Y + ++LY L EFI
Sbjct: 13 KTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMSKPIKVVQYNINTEELYSYLKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+VV+ESVL P+ +R TL +VLFK++EV S+L PSHL++L TLG
Sbjct: 73 HILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDP 914
+N+ +VLD GY E+ +LP+YEG+P+L W L LGG +++ + + L+++
Sbjct: 133 INSAMVLDCGYRESLVLPIYEGIPILNCWGALPLGG-KALHKELETQLLEQCTVDTGAAK 191
Query: 915 YIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEI-AAK-NPDHKY-----PSGFMYPLK 967
+ ++ + ++EDIKV +CFV+ ++R +I AAK N D P YPL
Sbjct: 192 GQSLPSVMGSVPEGVLEDIKVRTCFVSDLKRGLQIQAAKFNIDGNNERPTPPPNVDYPLD 251
Query: 968 NGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNT 1027
K + V G IR++ E+LFE D + ++AT+ILDSLL D R++ +
Sbjct: 252 GEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLLQ-CPIDTRKQLAENLVIIGGTS 310
Query: 1028 RTPEKLCCLVGWSNICC----YK--LFIKNFKFHEFPAKENYVAWLGGAIFAATESY-NK 1080
P L L+ YK L KNF+ H PAK N VAWLGGA+F A +
Sbjct: 311 MLPGFLHRLLAEIRYLVEKPKYKKTLGTKNFRIHTPPAKANCVAWLGGAVFGALQDILGS 370
Query: 1081 RAIQKDVYLNNNVIPDWCNLSVNLP 1105
R+I K+ Y IPDWC+L+ N P
Sbjct: 371 RSISKEYYNQTGRIPDWCSLN-NPP 394
|
|
| UNIPROTKB|Q3ZBD2 ACTR10 "Actin-related protein 10" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 147/385 (38%), Positives = 218/385 (56%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G +TK G G P+ I S +K K + +Y + ++LY L EFI
Sbjct: 13 KTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKKAGMPKPIRVVQYNINTEELYSYLKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+VV+ESVL P+ +R TL +VLFK++EV S+L PSHL++L TLG
Sbjct: 73 HILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDP 914
+N+ +VLD GY E+ +LP+YEG+PVL W L LGG +++ + + L+++
Sbjct: 133 INSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGG-KALHKELETQLLEQCTVDTGAAK 191
Query: 915 YIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEI-AAK-NPDHKY-----PSGFMYPLK 967
+ ++ + I+EDIKV +CFV+ ++R I AAK N D P YPL
Sbjct: 192 EQSLPSVMGSIPEGILEDIKVRTCFVSDLKRGLNIQAAKFNIDGNTERPSPPPNVDYPLD 251
Query: 968 NGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNT 1027
K + V G IR++ E+LFE D + ++AT+ILDSL+ D R++ +
Sbjct: 252 GEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLMQ-CPIDTRKQLAENLVVIGGTS 310
Query: 1028 RTPEKLCCLVGWSNICC----YK--LFIKNFKFHEFPAKENYVAWLGGAIFAATESY-NK 1080
P L L+ YK L K F+ H PAK N VAWLGGAIF A +
Sbjct: 311 MLPGFLHRLLAEIRYLVEKPKYKKTLATKTFRIHTPPAKANCVAWLGGAIFGALQDILGS 370
Query: 1081 RAIQKDVYLNNNVIPDWCNLSVNLP 1105
R++ KD Y IPDWC+L+ N P
Sbjct: 371 RSVSKDYYNQTGRIPDWCSLN-NPP 394
|
|
| UNIPROTKB|E2RLP1 ACTR10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 8.0e-64, Sum P(2) = 8.0e-64
Identities = 145/385 (37%), Positives = 219/385 (56%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G +TK G G P+ I S +K K + +Y + ++LY L EFI
Sbjct: 13 KTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGLPKPIKVVQYNINTEELYSYLKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+VV+ESVL P+ +R TL +VLFK++EV S+L PSHL++L TLG
Sbjct: 73 HILYFRHLLVNPRDRRVVVIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDP 914
+N+ +VLD GY E+ +LP+YEG+PVL W L LGG +++ + + L+++
Sbjct: 133 INSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGG-KALHKELETQLLEQCTVDTGAAK 191
Query: 915 YIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEI-AAK-NPDHKY-----PSGFMYPLK 967
+ ++ + ++EDIKV +CFV+ ++R +I AAK N D P YPL
Sbjct: 192 EQSLPSVMGSIPEGVLEDIKVRTCFVSDLKRGLKIQAAKFNIDGNTERPLPPPNVDYPLD 251
Query: 968 NGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNT 1027
K + V G IR++ E+LFE D + ++AT+ILDSL+ D R++ +
Sbjct: 252 GEKILHVLGSIRDSVVEILFEQDNEEKSVATLILDSLIQ-CPIDTRKQLAENLVVIGGTS 310
Query: 1028 RTPEKLCCLVGWSNICC----YK--LFIKNFKFHEFPAKENYVAWLGGAIFAATESY-NK 1080
P L L+ YK L K F+ H PAK N VAWLGGAIF A +
Sbjct: 311 MLPGFLHRLLSEIRYLVEKPKYKKALGTKTFRIHNPPAKANCVAWLGGAIFGALQDILGS 370
Query: 1081 RAIQKDVYLNNNVIPDWCNLSVNLP 1105
R++ K+ Y IPDWC+L+ N P
Sbjct: 371 RSVSKEYYNQTGRIPDWCSLN-NPP 394
|
|
| UNIPROTKB|Q9NZ32 ACTR10 "Actin-related protein 10" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 2.8e-63, Sum P(2) = 2.8e-63
Identities = 144/387 (37%), Positives = 226/387 (58%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK-DADDLYGLLIEFI 794
KT VV+D+G +TK G G P+ I S +K K + +Y + ++LY L EFI
Sbjct: 13 KTAVVIDLGEAFTKCGFAGETGPRCIIPSVIKRAGMPKPVRVVQYNINTEELYSYLKEFI 72
Query: 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854
++F++ + +P+D+R+V++ESVL P+ +R TL +VLFK++EV S+L PSHL++L TLG
Sbjct: 73 HILYFRHLLVNPRDRRVVIIESVLCPSHFRETLTRVLFKYFEVPSVLLAPSHLMALLTLG 132
Query: 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDE--IKALENP 912
+N+ +VLD GY E+ +LP+YEG+PVL W L LGG +++ + + L+++ +
Sbjct: 133 INSAMVLDCGYRESLVLPIYEGIPVLNCWGALPLGG-KALHKELETQLLEQCTVDTSVAK 191
Query: 913 DPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEI-AAK-NPD--HKYPS---GFMYP 965
+ + +V + ++ + ++EDIK +CFV+ ++R +I AAK N D ++ PS YP
Sbjct: 192 EQSLPSV--MGSVPEGVLEDIKARTCFVSDLKRGLKIQAAKFNIDGNNERPSPPPNVDYP 249
Query: 966 LKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWV 1025
L K + + G IR++ E+LFE D + ++AT+ILDSL+ D R++
Sbjct: 250 LDGEKILHILGSIRDSVVEILFEQDNEEQSVATLILDSLIQ-CPIDTRKQLAENLVVIGG 308
Query: 1026 NTRTPEKLCCLVGWSNICC----YK--LFIKNFKFHEFPAKENYVAWLGGAIFAATESY- 1078
+ P L L+ YK L K F+ H PAK N VAWLGGAIF A +
Sbjct: 309 TSMLPGFLHRLLAEIRYLVEKPKYKKALGTKTFRIHTPPAKANCVAWLGGAIFGALQDIL 368
Query: 1079 NKRAIQKDVYLNNNVIPDWCNLSVNLP 1105
R++ K+ Y IPDWC+L+ N P
Sbjct: 369 GSRSVSKEYYNQTGRIPDWCSLN-NPP 394
|
|
| FB|FBgn0031050 Arp10 "Actin-related protein 10" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 565 (203.9 bits), Expect = 3.3e-60, Sum P(2) = 3.3e-60
Identities = 137/384 (35%), Positives = 219/384 (57%)
Query: 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 795
K +VLDIG+ YTK G P+ + ++V T + L++Y ++LY L++F++
Sbjct: 11 KPPIVLDIGTAYTKLGFAAEAYPRKIMPTEVVMTTTGIRKRLFDYDTPEELYDQLVDFLQ 70
Query: 796 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 855
IFFK+ + SPK+++ V+VE+V TV R TLA+VLF H++V S+L+VP HL++L TL V
Sbjct: 71 TIFFKHLLVSPKERKFVLVENVFGSTVLRETLARVLFVHFDVSSVLFVPVHLIALSTLAV 130
Query: 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDE-IKALENPDP 914
T LV+D+GYSE +++PV+ GV ++ A+KD S GG ++ + I+ L++ +K
Sbjct: 131 PTALVVDVGYSETSVMPVFSGVQIMAAFKDQSYGGS-AIHAEIKRQLVESGVK------- 182
Query: 915 YIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPS---GFMYPLK-NGK 970
E + L++S++EDIKV +CFVTTMER+ A N D P+ Y + N
Sbjct: 183 -----ESL--LTESVLEDIKVRTCFVTTMERAK--ARANGDENQPTPAPDVDYIVSDNDA 233
Query: 971 KIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGRE--ETQYF----PFRCW 1024
I V G +RE+A+E++FE + ++ +IL S+L R E+ +
Sbjct: 234 VIQVPGLLRESAYEIMFEASNERDSLPHLILRSILDCTLDVRRALVESVFLVGGGSMVQG 293
Query: 1025 VNTRTPEKLCCLVGWSNICCYKLFIK-NFKFHEFPAKENYVAWLGGAIFAATESYNKRAI 1083
+ R ++L L+ + + FKF K+N+ AWLGGA+ AT+ R++
Sbjct: 294 LLARLRQELQHLLTEDPFYAERFHGELQFKFFNAVGKQNFTAWLGGALCGATDLIQTRSL 353
Query: 1084 QKDVYLNNNVIPDWCNLSVNLPSG 1107
K+ YL + +PDW NL N P+G
Sbjct: 354 VKETYLKSEHVPDWSNLCDNRPTG 377
|
|
| FB|FBgn0031458 aph-1 "anterior pharynx defective 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 6.2e-33, P = 6.2e-33
Identities = 78/176 (44%), Positives = 101/176 (57%)
Query: 558 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIIXXXXXXXXXXXXXXXXXXXXXXRYQC 617
MT EF GCT AFGP A+F+ TI DPV++II +
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISSLWYALIPLKE 60
Query: 618 NIIFGVVISVLCQEAFRYILYLILQKSRGGLQYVS-DRNTMDNTYAMAYVSGLGYGTISA 676
+ FGVV SV QEAFRYI+Y IL+ + GL V+ D DN + +AYVSGLG+G IS
Sbjct: 61 FLAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTRVTDNKHILAYVSGLGFGIISG 120
Query: 677 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKN 732
F+L+NVL +SGPGTMGLKG ++ F T++ LLH FWS++FF + N
Sbjct: 121 MFALVNVLADMSGPGTMGLKGGTELFFVTSAAQALSIILLHTFWSVIFFNAFDTNN 176
|
|
| ZFIN|ZDB-GENE-031118-31 aph1b "anterior pharynx defective 1B" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 77/195 (39%), Positives = 110/195 (56%)
Query: 558 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVI----------IXXXXXXXXXXXXXXXX 607
MT F GCT AFGP IA+F+ TI +DP++VI +
Sbjct: 1 MTVAVFFGCTFIAFGPAIALFMFTIARDPLRVIFLIAGAFFWLVSLLLSSLVWFITVQIS 60
Query: 608 XXXXXXRYQCNIIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSDRNTMD-NTYAMAYV 666
+ + +IFGVV+SVL QEAFRY Y +L+K+ GL +S +TM + +AYV
Sbjct: 61 NKNSATQQRGLLIFGVVLSVLLQEAFRYGYYRLLKKANEGLLALSQEDTMPISMRQLAYV 120
Query: 667 SGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFR 726
SGLG+G +S AFS++N+L GPGT+G+ GESQ++ +++ T LLH+FW +VFF
Sbjct: 121 SGLGFGFMSGAFSVVNILSDSLGPGTVGIHGESQHYFISSAFMTLAIILLHMFWGVVFFE 180
Query: 727 GVEIKNRTLKTGVVL 741
E + R G V+
Sbjct: 181 ACE-RQRWWALGAVV 194
|
|
| ZFIN|ZDB-GENE-050913-96 zgc:114200 "zgc:114200" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 6.6e-28, P = 6.6e-28
Identities = 69/183 (37%), Positives = 99/183 (54%)
Query: 558 MTYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIIXXXXXXXXXXXXXXXXXXXXXXRYQC 617
MT F GC AFGP A+F+ T+ +DP++VII
Sbjct: 1 MTLAVFFGCAFIAFGPAFALFVFTVAKDPLRVIILIAGAFFWLLSLLLSSLVWFIAVKAS 60
Query: 618 N----------IIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSD-RNTMDNTYAMAYV 666
N +IFGV SVL QE FR+ Y +L+K+ GL +SD ++ + MAYV
Sbjct: 61 NSQDPSLPRGLLIFGVFFSVLLQEVFRFAYYRLLRKATEGLAAISDDASSAISVRQMAYV 120
Query: 667 SGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFR 726
+GLG+G + AFS++N+L GPGT+G+ G+SQY+ T ++ T +LLH FW ++FF
Sbjct: 121 AGLGFGVMRGAFSMINILSDSLGPGTVGIFGDSQYYFITAALMTLALTLLHTFWGVLFFE 180
Query: 727 GVE 729
G E
Sbjct: 181 GCE 183
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1107 | |||
| pfam06105 | 237 | pfam06105, Aph-1, Aph-1 protein | 2e-62 | |
| pfam00022 | 367 | pfam00022, Actin, Actin | 3e-24 | |
| pfam00022 | 367 | pfam00022, Actin, Actin | 2e-23 | |
| smart00268 | 373 | smart00268, ACTIN, Actin | 6e-19 | |
| smart00268 | 373 | smart00268, ACTIN, Actin | 7e-19 | |
| pfam00022 | 367 | pfam00022, Actin, Actin | 7e-16 | |
| smart00268 | 373 | smart00268, ACTIN, Actin | 6e-13 | |
| PTZ00004 | 378 | PTZ00004, PTZ00004, actin-2; Provisional | 8e-12 | |
| PTZ00004 | 378 | PTZ00004, PTZ00004, actin-2; Provisional | 2e-10 | |
| COG5277 | 444 | COG5277, COG5277, Actin and related proteins [Cyto | 7e-10 | |
| COG5277 | 444 | COG5277, COG5277, Actin and related proteins [Cyto | 2e-09 | |
| PTZ00281 | 376 | PTZ00281, PTZ00281, actin; Provisional | 2e-08 | |
| PTZ00281 | 376 | PTZ00281, PTZ00281, actin; Provisional | 5e-08 | |
| PTZ00281 | 376 | PTZ00281, PTZ00281, actin; Provisional | 6e-08 | |
| PTZ00004 | 378 | PTZ00004, PTZ00004, actin-2; Provisional | 1e-07 | |
| PTZ00466 | 380 | PTZ00466, PTZ00466, actin-like protein; Provisiona | 2e-07 | |
| COG5277 | 444 | COG5277, COG5277, Actin and related proteins [Cyto | 3e-07 | |
| PTZ00466 | 380 | PTZ00466, PTZ00466, actin-like protein; Provisiona | 6e-07 | |
| PTZ00466 | 380 | PTZ00466, PTZ00466, actin-like protein; Provisiona | 1e-06 | |
| PTZ00452 | 375 | PTZ00452, PTZ00452, actin; Provisional | 1e-06 | |
| PTZ00452 | 375 | PTZ00452, PTZ00452, actin; Provisional | 3e-06 | |
| PTZ00452 | 375 | PTZ00452, PTZ00452, actin; Provisional | 3e-06 | |
| PTZ00280 | 414 | PTZ00280, PTZ00280, Actin-related protein 3; Provi | 2e-05 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-04 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-04 | |
| PTZ00280 | 414 | PTZ00280, PTZ00280, Actin-related protein 3; Provi | 5e-04 | |
| PTZ00280 | 414 | PTZ00280, PTZ00280, Actin-related protein 3; Provi | 0.001 |
| >gnl|CDD|218900 pfam06105, Aph-1, Aph-1 protein | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 2e-62
Identities = 87/185 (47%), Positives = 126/185 (68%), Gaps = 2/185 (1%)
Query: 559 TYMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIR-YQC 617
T F GCT AFGP +A+FL TI +DP++VI+L+A +F WL+SLL+SS+VWF++ +
Sbjct: 1 TVAVFFGCTFIAFGPALALFLLTIARDPLRVILLIAGSFFWLVSLLISSLVWFIVVPLRD 60
Query: 618 NIIFGVVISVLCQEAFRYILYLILQKSRGGLQYVSDRNTM-DNTYAMAYVSGLGYGTISA 676
+ FG++ SVL QE FRY Y +L+K+ GL ++D+ + + + +AYVSGLG+G IS
Sbjct: 61 KLAFGILFSVLFQELFRYAYYRLLKKAEEGLDSIADQGQIPIDKHQLAYVSGLGFGVISG 120
Query: 677 AFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLLHVFWSIVFFRGVEIKNRTLK 736
FSL+N+L SGPGT+GL G+SQYF T++ T LLH FW ++FF G E + +
Sbjct: 121 VFSLVNILADSSGPGTVGLHGDSQYFFLTSAFITLAIILLHTFWGVIFFDGCEKRKYSHI 180
Query: 737 TGVVL 741
VV+
Sbjct: 181 AFVVV 185
|
This family consists of several eukaryotic Aph-1 proteins.Gamma-secretase catalyzes the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signaling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity. Length = 237 |
| >gnl|CDD|200935 pfam00022, Actin, Actin | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-24
Identities = 89/403 (22%), Positives = 146/403 (36%), Gaps = 85/403 (21%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKI- 797
+V+D GS TK G G P+ I S V P + Y D +E I
Sbjct: 6 LVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMVKYYVGDEALSKRPGLEVRYPIE 65
Query: 798 -----------------FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSL 840
FF+ P++ +++ E L P R +++F+ + V +L
Sbjct: 66 DGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEIMFETFGVPAL 125
Query: 841 LYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRS 900
++S G TGLV+D G +++PVYEG + A + L G + ++R
Sbjct: 126 YLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDL-AGDDLTDYLRK 184
Query: 901 LLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPS 960
LL + E + ++ DIK C+V+ A+ +P
Sbjct: 185 LL------SSRTYSFNTYAE------EEVVRDIKESLCYVSDDPFGDTAASSSPPTV--- 229
Query: 961 GFMYPLKNGKKIPVSGHIRETAFEVLFELDL---DMLNIATIILDSLLSVASSDGREETQ 1017
Y L +G I + G+ R E+LF L + I +I DS+
Sbjct: 230 --SYELPDGYVIIL-GNERFRVPEILFNPSLIGSESAGIPELIYDSIN------------ 274
Query: 1018 YFPFRCWVNTRTPEKLCCLVGWSNICC------------------YKLFIKNFKF--HEF 1057
C V+ R P L +NI +L K
Sbjct: 275 ----ACDVDLR-PSLL------ANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAP 323
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVYLNN--NVIPDWC 1098
P + Y AW+GG+I A+ ++ + + K Y + +V+ C
Sbjct: 324 PNERKYSAWIGGSILASLGTFQQMWVSKQEYEEHGSSVVERKC 366
|
Length = 367 |
| >gnl|CDD|200935 pfam00022, Actin, Actin | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 90/412 (21%), Positives = 147/412 (35%), Gaps = 94/412 (22%)
Query: 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKI- 103
+V+D GS TK G G P+ I S V P + Y D +E I
Sbjct: 6 LVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMVKYYVGDEALSKRPGLEVRYPIE 65
Query: 104 -----------------FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSL 146
FF+ P++ +++ E L P R +++F+ + V +L
Sbjct: 66 DGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEIMFETFGVPAL 125
Query: 147 LYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206
++S G TGLV+D G +++PVYEG + A + L G + ++R
Sbjct: 126 YLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAGDDLTDYLR-- 183
Query: 207 QSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 266
K L + T + E ++ DIK C+V+ A+
Sbjct: 184 ---------------KLLSSRTYSFNTYAEEE-----VVRDIKESLCYVSDDPFGDTAAS 223
Query: 267 KNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL---DMLNIATIILDSLLSVA 323
+P Y L +G I + G+ R E+LF L + I +I DS+
Sbjct: 224 SSPPTV-----SYELPDGYVIIL-GNERFRVPEILFNPSLIGSESAGIPELIYDSIN--- 274
Query: 324 SSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICC------------------YKLFIK 365
C V+ R P L +NI +L
Sbjct: 275 -------------ACDVDLR-PSLL------ANIVVTGGTTLFPGFTERLEKELAQLAPS 314
Query: 366 NFKF--HEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNN--NVIPDWC 413
K P + Y AW+GG+I A+ ++ + + K Y + +V+ C
Sbjct: 315 GVKVKIIAPPNERKYSAWIGGSILASLGTFQQMWVSKQEYEEHGSSVVERKC 366
|
Length = 367 |
| >gnl|CDD|214592 smart00268, ACTIN, Actin | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 6e-19
Identities = 80/409 (19%), Positives = 140/409 (34%), Gaps = 80/409 (19%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRN 82
+V+D GS K G G P+ V I + F+ + ++ R
Sbjct: 4 IVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVGDAKDIFVGDEAQEK-----RG 58
Query: 83 LYEYKDADDLYGLLI------EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKV 136
E K + G++ + FF P++ +++ E + P R + ++
Sbjct: 59 GLELKYPIEN-GIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEI 117
Query: 137 LFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGG 196
+F+ + +L ++SL G TGLV+D G ++PV +G + A K + + G
Sbjct: 118 MFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAG 177
Query: 197 QSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256
+ + D +K L + Y I+ +IK C+V
Sbjct: 178 RD------------------ITDYLKELLSERGYQFNSSA----EFEIVREIKEKLCYVA 215
Query: 257 TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIAT 313
A+ Y L +G I V G+ R E+LF + L+ I
Sbjct: 216 EDFEKEMKLARESSESSKLEKTYELPDGNTIKV-GNERFRIPEILFSPELIGLEQKGIHE 274
Query: 314 IILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNI------CCY------- 360
++ +S+ C ++ R L + NI
Sbjct: 275 LVYESIQK----------------CDIDVRKD--L-----YENIVLSGGSTLIPGFGERL 311
Query: 361 -----KLFIKNFKFHEF-PAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+L K K P + Y WLGG+I A+ ++ I K Y
Sbjct: 312 EKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEY 360
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373 |
| >gnl|CDD|214592 smart00268, ACTIN, Actin | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 7e-19
Identities = 79/395 (20%), Positives = 135/395 (34%), Gaps = 83/395 (21%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQV-KDPHTNKL----------------RNLYEYK 781
+V+D GS K G G P+ S V + + R E K
Sbjct: 4 IVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVGDAKDIFVGDEAQEKRGGLELK 63
Query: 782 DADDLYGLLI------EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHY 835
+ G++ + FF P++ +++ E + P R + +++F+ +
Sbjct: 64 YPIEN-GIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETF 122
Query: 836 EVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895
+L ++SL G TGLV+D G ++PV +G + A K + + G
Sbjct: 123 NFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRD--- 179
Query: 896 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPD 955
+ D +K L + Y I+ +IK C+V A+
Sbjct: 180 ------ITDYLKELLSERGYQFNSSA----EFEIVREIKEKLCYVAEDFEKEMKLARESS 229
Query: 956 HKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSDG 1012
Y L +G I V G+ R E+LF + L+ I ++ +S+
Sbjct: 230 ESSKLEKTYELPDGNTIKV-GNERFRIPEILFSPELIGLEQKGIHELVYESIQK------ 282
Query: 1013 REETQYFPFRCWVNTRTPEKLCCLVGWSNI------CCY------------KLFIKNFKF 1054
C ++ R L + NI +L K K
Sbjct: 283 ----------CDIDVRKD--L-----YENIVLSGGSTLIPGFGERLEKELKQLAPKKLKV 325
Query: 1055 HEF-PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y WLGG+I A+ ++ I K Y
Sbjct: 326 KVIAPPERKYSVWLGGSILASLSTFEDMWITKKEY 360
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373 |
| >gnl|CDD|200935 pfam00022, Actin, Actin | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 7e-16
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 434 VSGHIRETAFEVLFELDL---DMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPG 490
+ G+ R E+LF L + I +I DS+ D++ L NI++TGGT + PG
Sbjct: 240 ILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGGTTLFPG 299
Query: 491 LKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQK 550
RL +EL L S K P + Y AW+GG+I A+ ++ + + K
Sbjct: 300 FTERLEKELAQLAPSGVK--------VKIIAPPNERKYSAWIGGSILASLGTFQQMWVSK 351
Query: 551 DAY 553
Y
Sbjct: 352 QEY 354
|
Length = 367 |
| >gnl|CDD|214592 smart00268, ACTIN, Actin | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-13
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 439 RETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRL 495
R E+LF + L+ I ++ +S+ K D++K L ENI+L+GG+ + PG RL
Sbjct: 252 RFRIPEILFSPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERL 311
Query: 496 LQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
+EL+ L P K K+ + P + Y WLGG+I A+ ++ I K Y
Sbjct: 312 EKELKQLA---PKKLKVKVIA------PPERKYSVWLGGSILASLSTFEDMWITKKEY 360
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily. Length = 373 |
| >gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 8e-12
Identities = 54/278 (19%), Positives = 107/278 (38%), Gaps = 31/278 (11%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIF-GSFQPKGFIKSQVKDPH- 76
E V+D GS K G G P+ V I + GI G + ++ + +D
Sbjct: 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRG 64
Query: 77 TNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKV 136
L+ E+ + + + F+ +P++ +++ E+ L P R + ++
Sbjct: 65 ILTLKYPIEHGIVTNWDDME-KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 123
Query: 137 LFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGG 196
+F+ + V ++ ++SL G TG+VLD G + +P+YEG + A L + G
Sbjct: 124 MFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAG 183
Query: 197 QSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256
+ L + + + + T I+ DIK C++
Sbjct: 184 R------------------DLTEYMMKILHERGTTFTT----TAEKEIVRDIKEKLCYIA 221
Query: 257 -----TMERSAEIAAKNPD-HKYPSGFMYPLKNGKKIP 288
M SA + K + ++ P G + + + +
Sbjct: 222 LDFDEEMGNSAGSSDKYEESYELPDGTIITVGSERFRC 259
|
Length = 378 |
| >gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 59/263 (22%), Positives = 103/263 (39%), Gaps = 42/263 (15%)
Query: 740 VLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKD------ADDLYGLL--- 790
V+D GS K G G P+ S V P + E KD A D G+L
Sbjct: 10 VVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLK 69
Query: 791 --IEF--------IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYE 836
IE + KI F+ +P++ +++ E+ L P R + +++F+ +
Sbjct: 70 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHN 129
Query: 837 VLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVES 896
V ++ ++SL G TG+VLD G + +P+YEG + A L + G
Sbjct: 130 VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAG------ 183
Query: 897 HIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEIAA 951
L + + + + T I+ DIK C++ M SA +
Sbjct: 184 ---RDLTEYMMKILHERGTTFTT----TAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSD 236
Query: 952 KNPD-HKYPSGFMYPLKNGKKIP 973
K + ++ P G + + + +
Sbjct: 237 KYEESYELPDGTIITVGSERFRC 259
|
Length = 378 |
| >gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 452 DMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDK 511
D+ + ++ S+ D++K L NI+LTGGT+ PG RL +EL +L P K
Sbjct: 339 DIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSL---APSIWK 395
Query: 512 LFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNKRAIQKDAY 553
+ + P + + AWLG +I A+ E++ + I K+ Y
Sbjct: 396 VSV-------IPPPDPSLDAWLGASILASLETFQQLWITKEEY 431
|
Length = 444 |
| >gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 2e-09
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 14/192 (7%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRN 82
+V+D GS TK G G+ P V S + S K R+
Sbjct: 9 IVIDNGSGTTKAGFAGNDTPTTV---FPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRD 65
Query: 83 --LYEYKDADDL-----YGLLIEFIRKIFFKYFV--TSPKDKRIVVVESVLTPTVWRNTL 133
L E + + + + + FF SP++ +++ E L P R +
Sbjct: 66 NSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKI 125
Query: 134 AKVLFKHYEVLSLLYVPSHLVSLCTLG--VNTGLVLDIGYSEATLLPVYEGVPVLCAWKD 191
++LF+ V +L ++SL G TGLV+D G S ++PV +G+ + A K
Sbjct: 126 TELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKR 185
Query: 192 LSLGGQSVEAHI 203
+ +GG+ + ++
Sbjct: 186 IDIGGRDITDYL 197
|
Length = 444 |
| >gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 2e-08
Identities = 91/391 (23%), Positives = 155/391 (39%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-HTNKL-----RNLYEYKDADDLYGLL- 790
+V+D GS K G G P+ S V P HT + ++ Y +A G+L
Sbjct: 8 ALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILT 67
Query: 791 ----IEF--------IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
IE + KI F+ +P++ +++ E+ L P R + +++F+
Sbjct: 68 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 127
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ ++ ++SL G TG+V+D G + +P+YEG + A L L G
Sbjct: 128 FNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAG---- 183
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-----TMERSAEI 949
R L +K L T + E I+ DIK +V M+ +A
Sbjct: 184 ----RDLTDYMMKILTERGYSFTTTAERE-----IVRDIKEKLAYVALDFEAEMQTAASS 234
Query: 950 AAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRETAFEVLFELDLDMLNIA 997
+A ++ P G + + N + + P S I ET + + + D+D
Sbjct: 235 SALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVD----- 289
Query: 998 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
I D +V S G T FP + R ++L L + + IK
Sbjct: 290 -IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTALAPST------MKIKIIA---- 332
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 333 PPERKYSVWIGGSILASLSTFQQMWISKEEY 363
|
Length = 376 |
| >gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 5e-08
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 444 EVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELR 500
E LF+ L ++ I +S++K D++K L N++L+GGT M PG+ R+ +EL
Sbjct: 260 EALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELT 319
Query: 501 TLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L S K K+ P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 320 ALAPS-TMKIKIIA--------PPERKYSVWIGGSILASLSTFQQMWISKEEY 363
|
Length = 376 |
| >gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (134), Expect = 6e-08
Identities = 89/408 (21%), Positives = 162/408 (39%), Gaps = 72/408 (17%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN 78
+ +V+D GS K G G P+ V I + G+ K S V D +
Sbjct: 5 DVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKD---SYVGDEAQS 61
Query: 79 KLRNLYEYKDADDLYGLLIEF--IRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNT 132
K R + K + +G++ + + KI F+ +P++ +++ E+ L P R
Sbjct: 62 K-RGILTLKYPIE-HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 133 LAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDL 192
+ +++F+ + ++ ++SL G TG+V+D G + +P+YEG + A L
Sbjct: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRL 179
Query: 193 SLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 252
L G+ + ++ +K L T + E I+ DIK
Sbjct: 180 DLAGRDLTDYM-----------------MKILTERGYSFTTTAERE-----IVRDIKEKL 217
Query: 253 CFVT-----TMERSAEIAAKNPDHKYPSGFMYPLKNGK-KIP-----------VSGHIRE 295
+V M+ +A +A ++ P G + + N + + P S I E
Sbjct: 218 AYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE 277
Query: 296 TAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWS 355
T + + + D+D I D +V S G T FP + R ++L L +
Sbjct: 278 TTYNSIMKCDVD------IRKDLYGNVVLSGG---TTMFP---GIADRMNKELTALAPST 325
Query: 356 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
+ IK P + Y W+GG+I A+ ++ + I K+ Y
Sbjct: 326 ------MKIKIIA----PPERKYSVWIGGSILASLSTFQQMWISKEEY 363
|
Length = 376 |
| >gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 456 IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIK 515
I + S+ K D++K L NI+L+GGT M GL RL +EL TL S
Sbjct: 277 IHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPS---------- 326
Query: 516 NFKFH-EFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
K P + Y W+GG+I ++ ++ + + K+ Y
Sbjct: 327 TMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEY 365
|
Length = 378 |
| >gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 2e-07
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G R A EVLF L L+ L ++ +I+ S+ + D+++ L +I+L+GGT M G
Sbjct: 256 GSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFG 315
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
RLL E+R P + I P + + ++GG+I A+ ++ K I K
Sbjct: 316 DRLLNEIRKF---APKDITIRISA------PPERKFSTFIGGSILASLATFKKIWISKQE 366
Query: 553 Y 553
+
Sbjct: 367 F 367
|
Length = 380 |
| >gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 35/226 (15%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP-------------------HTNKLRN--L 777
+V+D GS TK G G+ P S V R+ L
Sbjct: 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSL 68
Query: 778 YEYKDADDL-----YGLLIEFIRKIFFKYFV--TSPKDKRIVVVESVLTPTVWRNTLAKV 830
E + + + + + FF SP++ +++ E L P R + ++
Sbjct: 69 LELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITEL 128
Query: 831 LFKHYEVLSLLYVPSHLVSLCTLG--VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSL 888
LF+ V +L ++SL G TGLV+D G S ++PV +G+ + A K + +
Sbjct: 129 LFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDI 188
Query: 889 GGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK 934
GG + +++ LL ++ Y + E VE S+ I+ +IK
Sbjct: 189 GGRDITD-YLKKLLREKYPPSRG---YNLKSELVEYSSE-IVNEIK 229
|
Length = 444 |
| >gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 6e-07
Identities = 84/400 (21%), Positives = 155/400 (38%), Gaps = 82/400 (20%)
Query: 41 QPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR------NLYEYKDADDLYG 94
QP +++D G+ Y K G G P S V P ++ N++ A++ G
Sbjct: 13 QP--IIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRG 70
Query: 95 LL----------------IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLF 138
LL +E I + + ++ +++ E+ L P + +A+V F
Sbjct: 71 LLKVTYPINHGIIENWNDMENIWIHVYNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFF 130
Query: 139 KHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQS 198
+ + V +L ++SL + G G VLD G + +YEG + + G+
Sbjct: 131 ETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRD 190
Query: 199 VEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-T 257
+ ++ L+ + L N T ++E +++++K C+V+
Sbjct: 191 ITTYL-----------GYLLRKNGHLFN------TSAEME-----VVKNMKENCCYVSFN 228
Query: 258 MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATI 314
M + KN K + Y L +G +I + G R A EVLF L L+ L ++ +
Sbjct: 229 MNKE-----KNSSEKALTTLPYILPDGSQILI-GSERYRAPEVLFNPSILGLEYLGLSEL 282
Query: 315 ILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNIC----------CYKLFI 364
I+ S ++ A D R RT L G + + K
Sbjct: 283 IVTS-ITRADMDLR--------------RTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAP 327
Query: 365 KNFKFH-EFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 403
K+ P + + ++GG+I A+ ++ K I K +
Sbjct: 328 KDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEF 367
|
Length = 380 |
| >gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 1e-06
Identities = 82/387 (21%), Positives = 154/387 (39%), Gaps = 71/387 (18%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR------NLYEYKDADDLYGLL-- 790
+++D G+ Y K G G P S V P ++ N++ A++ GLL
Sbjct: 15 IIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKV 74
Query: 791 --------------IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYE 836
+E I + + ++ +++ E+ L P + +A+V F+ +
Sbjct: 75 TYPINHGIIENWNDMENIWIHVYNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFN 134
Query: 837 VLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVES 896
V +L ++SL + G G VLD G + +YEG + + G+ + +
Sbjct: 135 VPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYEGYSITNTITRTDV-AGRDITT 193
Query: 897 HIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT-TMERSAEIAAKNPD 955
++ L+ + L N T ++E +++++K C+V+ M + KN
Sbjct: 194 YL-GYLLRKNGHLFN------TSAEME-----VVKNMKENCCYVSFNMNKE-----KNSS 236
Query: 956 HKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSDG 1012
K + Y L +G +I + G R A EVLF L L+ L ++ +I+ S ++ A D
Sbjct: 237 EKALTTLPYILPDGSQILI-GSERYRAPEVLFNPSILGLEYLGLSELIVTS-ITRADMDL 294
Query: 1013 REETQYFPFRCWVNTRTPEKLCCLVGWSNIC----------CYKLFIKNFKFH-EFPAKE 1061
R RT L G + + K K+ P +
Sbjct: 295 R--------------RTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPER 340
Query: 1062 NYVAWLGGAIFAATESYNKRAIQKDVY 1088
+ ++GG+I A+ ++ K I K +
Sbjct: 341 KFSTFIGGSILASLATFKKIWISKQEF 367
|
Length = 380 |
| >gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (124), Expect = 1e-06
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 12/113 (10%)
Query: 444 EVLFELDLDMLNIATI---ILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELR 500
E+LF+ L L +A I S+ K D+++ L NI+L+GGT + PG+ RL EL
Sbjct: 259 EILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELT 318
Query: 501 TLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
L+ P + K+ + P + AW+GG+I + + I++ Y
Sbjct: 319 NLV---PSQLKIQVAA------PPDRRFSAWIGGSIQCTLSTQQPQWIKRQEY 362
|
Length = 375 |
| >gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 18 AEKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQ------ 71
A+ VV+D GS Y K GI G P I + + S K + +
Sbjct: 3 AQYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR 62
Query: 72 ----VKDPHTNKLRNLYEYKDADDLYGLLIEFI-RKIFFKYFVTSPKDKRIVVVESVLTP 126
+K+P N + N + DD IE I F+ SP+D+ + + ++ +
Sbjct: 63 GVLAIKEPIQNGIINSW-----DD-----IEIIWHHAFYNELCMSPEDQPVFMTDAPMNS 112
Query: 127 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVL 186
R + +++F+ + L ++SL T G GLV+D G +PV+EG +
Sbjct: 113 KFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIP 172
Query: 187 CAWKDLSLGGQ 197
A ++L G+
Sbjct: 173 QAITKINLAGR 183
|
Length = 375 |
| >gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 86/391 (21%), Positives = 151/391 (38%), Gaps = 75/391 (19%)
Query: 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQV---KDPHTNKLRNLYEY---KDADDLYGLL- 790
VV+D GS Y K GI G P + V K EY ++A G+L
Sbjct: 7 AVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLA 66
Query: 791 ---------------IEFI-RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 834
IE I F+ SP+D+ + + ++ + R + +++F+
Sbjct: 67 IKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFET 126
Query: 835 YEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894
+ L ++SL T G GLV+D G +PV+EG + A ++L G+
Sbjct: 127 FNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINL-AGRLC 185
Query: 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERS-----AEI 949
++ +L + +L P I I+++IK C+ + E
Sbjct: 186 TDYLTQILQELGYSLTEPHQRI------------IVKNIKERLCYTALDPQDEKRIYKES 233
Query: 950 AAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATI--ILDSLLSV 1007
+++ +K P G + +K+ +K S E+LF+ L L +A I + S +
Sbjct: 234 NSQDSPYKLPDGNILTIKS-QKFRCS--------EILFQPKLIGLEVAGIHHLAYSSIKK 284
Query: 1008 ASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
D R+E T FP + R +L +N+ +L I+
Sbjct: 285 CDLDLRQELCRNIVLSGGTTLFP---GIANRLSNEL------TNLVPSQLKIQVAA---- 331
Query: 1058 PAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
P + AW+GG+I + + I++ Y
Sbjct: 332 PPDRRFSAWIGGSIQCTLSTQQPQWIKRQEY 362
|
Length = 375 |
| >gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 51/221 (23%), Positives = 87/221 (39%), Gaps = 41/221 (18%)
Query: 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR-------NL-----YEYKDAD 90
VV+D G+ YTK G G+ +P I + + D R +L E A
Sbjct: 5 PVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS 64
Query: 91 DLYGL-------LIE-------FIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKV 136
Y L ++E F + FKY P++ ++ E + P R A++
Sbjct: 65 KSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEI 124
Query: 137 LFKHYEVLSLLYVPSHLVSLC----------TLGVNTGLVLDIGYSEATLLPVYEGVPVL 186
+F+ + V L +++L G TG V+D G ++PV +G +
Sbjct: 125 MFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIG 184
Query: 187 CAWKDLSLGGQSVEAHIR-----RGQSVESHIRSLLIDEIK 222
+ K + L G+ + I+ RG+ + + LL IK
Sbjct: 185 SSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIK 225
|
Length = 414 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 30/169 (17%)
Query: 45 VVLDIGSKYTKYGIF---GSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 101
+ +DIGS TK G+ G P+ + + V P A L E +R
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRPG------------AVTDLDELEEALR 48
Query: 102 KIFFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVL----SLLYVPSHLV-- 154
++ + + + + E P R + + L VP +V
Sbjct: 49 ELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVND 108
Query: 155 SLCTL--------GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 195
++ +T LV+D+G + V +G + A +L +
Sbjct: 109 AVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGAAGELGIA 157
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 3e-04
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 30/169 (17%)
Query: 739 VVLDIGSKYTKYGIF---GSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIR 795
+ +DIGS TK G+ G P+ + + V P A L E +R
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRPG------------AVTDLDELEEALR 48
Query: 796 KIFFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVL----SLLYVPSHLV-- 848
++ + + + + E P R + + L VP +V
Sbjct: 49 ELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVAVVND 108
Query: 849 SLCTL--------GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLG 889
++ +T LV+D+G + V +G + A +L +
Sbjct: 109 AVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGAAGELGIA 157
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-04
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 36/188 (19%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR-------NL-----YEYKDADDL 786
VV+D G+ YTK G G+ +P I + + D R +L E A
Sbjct: 7 VVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKS 66
Query: 787 YGL-------LIE-------FIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLF 832
Y L ++E F + FKY P++ ++ E + P R A+++F
Sbjct: 67 YTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMF 126
Query: 833 KHYEVLSLLYVPSHLVSLC----------TLGVNTGLVLDIGYSEATLLPVYEGVPVLCA 882
+ + V L +++L G TG V+D G ++PV +G + +
Sbjct: 127 ETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSS 186
Query: 883 WKDLSLGG 890
K + L G
Sbjct: 187 IKHIPLAG 194
|
Length = 414 |
| >gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 456 IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIE----------S 505
+ ++ D++ D ++PL +NI+L+GG+ M G RL +++R ++
Sbjct: 293 LPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSG 352
Query: 506 PPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYL 554
K N H + Y W GG++ A++ + K K Y
Sbjct: 353 GKLKPIPIDVNVVSHPR---QRYAVWYGGSMLASSPEFEKVCHTKAEYD 398
|
Length = 414 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1107 | |||
| PTZ00452 | 375 | actin; Provisional | 100.0 | |
| KOG0676|consensus | 372 | 100.0 | ||
| PTZ00466 | 380 | actin-like protein; Provisional | 100.0 | |
| PTZ00281 | 376 | actin; Provisional | 100.0 | |
| KOG0679|consensus | 426 | 100.0 | ||
| PTZ00452 | 375 | actin; Provisional | 100.0 | |
| KOG0676|consensus | 372 | 100.0 | ||
| PTZ00004 | 378 | actin-2; Provisional | 100.0 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 100.0 | |
| KOG0677|consensus | 389 | 100.0 | ||
| PTZ00281 | 376 | actin; Provisional | 100.0 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 100.0 | |
| KOG0677|consensus | 389 | 100.0 | ||
| KOG0679|consensus | 426 | 100.0 | ||
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 100.0 | |
| PTZ00004 | 378 | actin-2; Provisional | 100.0 | |
| KOG0680|consensus | 400 | 100.0 | ||
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 100.0 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 100.0 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 100.0 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 100.0 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 100.0 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 100.0 | |
| KOG0681|consensus | 645 | 100.0 | ||
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 100.0 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 100.0 | |
| PF06105 | 238 | Aph-1: Aph-1 protein; InterPro: IPR009294 This fam | 100.0 | |
| KOG0680|consensus | 400 | 100.0 | ||
| KOG3972|consensus | 252 | 100.0 | ||
| KOG0678|consensus | 415 | 100.0 | ||
| KOG0678|consensus | 415 | 100.0 | ||
| KOG0681|consensus | 645 | 100.0 | ||
| KOG0797|consensus | 618 | 100.0 | ||
| KOG0797|consensus | 618 | 99.96 | ||
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.94 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.93 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.91 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 99.89 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 99.87 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 99.86 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 99.81 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.81 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 99.77 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 99.76 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 99.59 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.49 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.47 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.29 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.18 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 98.67 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 98.66 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 98.65 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 98.63 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 98.62 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 98.6 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 98.59 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 98.55 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 98.51 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 98.51 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 98.49 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 98.49 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 98.48 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 98.47 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 98.43 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 98.35 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 98.34 | |
| PRK11678 | 450 | putative chaperone; Provisional | 98.33 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 98.1 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 98.1 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 97.81 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 97.76 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 97.73 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 97.72 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 97.67 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 97.64 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 97.59 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 97.56 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 97.55 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 97.51 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 97.48 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 97.3 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 97.25 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 97.25 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 97.25 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 97.18 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 97.09 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 97.05 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 96.95 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 96.77 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 96.66 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 96.6 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 96.55 | |
| PRK11678 | 450 | putative chaperone; Provisional | 96.41 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 96.06 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 95.96 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 95.95 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 95.83 | |
| KOG0104|consensus | 902 | 95.74 | ||
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 95.52 | |
| KOG0100|consensus | 663 | 95.41 | ||
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 95.29 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 94.91 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 94.86 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 94.32 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 94.25 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 93.35 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 93.15 | |
| PF10086 | 223 | DUF2324: Putative membrane peptidase family (DUF23 | 91.55 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 91.52 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 91.37 | |
| KOG0101|consensus | 620 | 91.06 | ||
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 90.75 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 90.49 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 90.33 | |
| KOG0103|consensus | 727 | 90.3 | ||
| KOG0104|consensus | 902 | 89.79 | ||
| PRK10854 | 513 | exopolyphosphatase; Provisional | 87.58 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 87.52 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 85.27 | |
| TIGR03123 | 318 | one_C_unchar_1 probable H4MPT-linked C1 transfer p | 85.02 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 84.44 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 83.67 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 81.37 |
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-68 Score=612.74 Aligned_cols=336 Identities=24% Similarity=0.399 Sum_probs=295.0
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC-----------------chhhHHHHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK-----------------DADDLYGLLIE 98 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~-----------------~~~~~~~~le~ 98 (1107)
.++||||+||+++|+|||||+.|+.++||+||+++... .++.+.|+ +.+.+||.||.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 56899999999999999999999999999999986542 12333333 44567999999
Q ss_pred HHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEE
Q psy9135 99 FIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLP 178 (1107)
Q Consensus 99 i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~P 178 (1107)
+|+|+|++.|+++|+++|++++|++++++..|++|+|+|||+|++|++++.+++++++|++|++||+|||+|++.|+|+|
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeeccc
Q psy9135 179 VYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTM 258 (1107)
Q Consensus 179 V~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~~ 258 (1107)
|+||+++.++++++++||+++|++|.++ |++.+..+ . ...+..++++|||++|||+.+
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L~~l--------------L~~~~~~~----~----~~~~~~~~~~iKe~~c~v~~d 222 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYLTQI--------------LQELGYSL----T----EPHQRIIVKNIKERLCYTALD 222 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHHHHH--------------HHhcCCCC----C----CHHHHHHHHHHHHHhccccCc
Confidence 9999999999999999999999999999 76665332 1 112467899999999999954
Q ss_pred hh-HHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccccc
Q psy9135 259 ER-SAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFR 337 (1107)
Q Consensus 259 ~~-~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1107)
.. +.+.... .....+.|+||||+.|.+
T Consensus 223 ~~~e~~~~~~----~~~~~~~y~LPDg~~i~l------------------------------------------------ 250 (375)
T PTZ00452 223 PQDEKRIYKE----SNSQDSPYKLPDGNILTI------------------------------------------------ 250 (375)
T ss_pred HHHHHHHhhc----cCCcCceEECCCCCEEEe------------------------------------------------
Confidence 32 2221111 113456799999988655
Q ss_pred ccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccccc
Q psy9135 338 CWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSV 417 (1107)
Q Consensus 338 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 417 (1107)
T Consensus 251 -------------------------------------------------------------------------------- 250 (375)
T PTZ00452 251 -------------------------------------------------------------------------------- 250 (375)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHH
Q psy9135 418 LGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYR 494 (1107)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eR 494 (1107)
+.|||+|||+||+| +.+..||+++|.+||++||+|+|++|++||||+||+|++|||.+|
T Consensus 251 ------------------~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 312 (375)
T PTZ00452 251 ------------------KSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANR 312 (375)
T ss_pred ------------------ehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHH
Confidence 57899999999999 567889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 495 LLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 495 L~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
|++||+++.|.. .+++|.+++ +|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 313 L~~El~~~~p~~--------~~v~v~~~~-~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~ 367 (375)
T PTZ00452 313 LSNELTNLVPSQ--------LKIQVAAPP-DRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGP 367 (375)
T ss_pred HHHHHHHhCCCC--------ceeEEecCC-CcceeEEECchhhcCccchhhhEeEHHHHhccCc
Confidence 999999999863 378998876 9999999999999999999999999999999998
|
|
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=595.75 Aligned_cols=340 Identities=28% Similarity=0.469 Sum_probs=298.7
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCccc------cceeccC--------------chhhHHHHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYK--------------DADDLYGLLIEF 99 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~------~~~~~~~--------------~~~~~~~~le~i 99 (1107)
.+.++||||+||..||+|||||+.|+.++||++|+++.... ++.++|+ +.+.+|++|+.|
T Consensus 5 ~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~~l~~Pie~Giv~~wd~me~i 84 (372)
T KOG0676|consen 5 DDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKRTLKYPIERGIVTDWDDMEKI 84 (372)
T ss_pred CCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccccccCccccccccchHHHHHH
Confidence 45689999999999999999999999999999999775432 3444443 455789999999
Q ss_pred HHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEe
Q psy9135 100 IRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPV 179 (1107)
Q Consensus 100 ~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV 179 (1107)
|+|+|++.|.++|++||+|+||++++|+.+||+|+|+|||+|++|++++..++++ |++|++||+|||+|++.|+++||
T Consensus 85 w~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI 162 (372)
T KOG0676|consen 85 WHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPI 162 (372)
T ss_pred HHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeec
Confidence 9999999999999999999999999999999999999999999999999887777 99999999999999999999999
Q ss_pred ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeecc-c
Q psy9135 180 YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT-M 258 (1107)
Q Consensus 180 ~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~-~ 258 (1107)
+||+++++++.++++||+++|+||+.+ |.+.|+.+. .....++++++||++||++. +
T Consensus 163 ~eG~~lp~ai~~ldl~G~dlt~~l~~~--------------L~~~g~s~~--------~~~~~eIv~diKeklCyvald~ 220 (372)
T KOG0676|consen 163 YEGYALPHAILRLDLAGRDLTDYLLKQ--------------LRKRGYSFT--------TSAEFEIVRDIKEKLCYVALDF 220 (372)
T ss_pred ccccccchhhheecccchhhHHHHHHH--------------HHhcccccc--------cccHHHHHHHhHhhhccccccc
Confidence 999999999999999999999999999 777664432 23468999999999999995 3
Q ss_pred hhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCccccccccccc
Q psy9135 259 ERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRC 338 (1107)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (1107)
.++.+. .+. .......|+||||+.|.+
T Consensus 221 ~~e~~~--~~~--~~~l~~~y~lPDg~~i~i------------------------------------------------- 247 (372)
T KOG0676|consen 221 EEEEET--ANT--SSSLESSYELPDGQKITI------------------------------------------------- 247 (372)
T ss_pred chhhhc--ccc--cccccccccCCCCCEEec-------------------------------------------------
Confidence 333222 111 113445588998887554
Q ss_pred cccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCccccccc
Q psy9135 339 WVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSVL 418 (1107)
Q Consensus 339 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 418 (1107)
T Consensus 248 -------------------------------------------------------------------------------- 247 (372)
T KOG0676|consen 248 -------------------------------------------------------------------------------- 247 (372)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHH
Q psy9135 419 GTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRL 495 (1107)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL 495 (1107)
+.|||+|||+||+| +.+..||++++.+||.+||+|+|++||+||||+||+|++|||.+||
T Consensus 248 -----------------~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl 310 (372)
T KOG0676|consen 248 -----------------GNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRL 310 (372)
T ss_pred -----------------CCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHH
Confidence 56999999999998 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCCCCcc
Q psy9135 496 LQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNMTYME 562 (1107)
Q Consensus 496 ~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~~~~~ 562 (1107)
++||+.+.|.. .+++|+++| ++.+++|+||||+|++++|+++||||+||+|+|+...|
T Consensus 311 ~kEl~~l~P~~--------~~ikv~~pp-~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~ 368 (372)
T KOG0676|consen 311 QKELQALAPST--------IKIKVIAPP-ERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIH 368 (372)
T ss_pred HHHHhhcCCCC--------cceEEecCc-ccccceecCceeEeecchHhhccccHHHHhhhCCceee
Confidence 99999999863 479999887 89999999999999999999999999999999986555
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=604.12 Aligned_cols=337 Identities=21% Similarity=0.391 Sum_probs=295.7
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC-----------------chhhHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK-----------------DADDLYGLL 96 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~-----------------~~~~~~~~l 96 (1107)
+..++||||+||+++|+|||||+.|+.++||++|+++... ..+.++|+ +.+.+|+.+
T Consensus 10 ~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~ 89 (380)
T PTZ00466 10 YSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDM 89 (380)
T ss_pred ccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHH
Confidence 5677999999999999999999999999999999986542 12334443 345679999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEE
Q psy9135 97 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 176 (1107)
Q Consensus 97 e~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V 176 (1107)
|.+|+|+| +.|+++++++||+++|++++++..|++|+|+|||+|++|++++++++++|+|++|++||+|||+|++.|+|
T Consensus 90 e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v 168 (380)
T PTZ00466 90 ENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHC 168 (380)
T ss_pred HHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEE
Confidence 99999998 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 177 LPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 177 ~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+||+||+++.++++++++||++++++|+++ |++.+..+. ...+.++++++||++|||+
T Consensus 169 ~PV~~G~~~~~~~~~~~~GG~~lt~~L~~l--------------L~~~~~~~~--------~~~~~~~v~~iKe~~c~v~ 226 (380)
T PTZ00466 169 VSIYEGYSITNTITRTDVAGRDITTYLGYL--------------LRKNGHLFN--------TSAEMEVVKNMKENCCYVS 226 (380)
T ss_pred EEEECCEEeecceeEecCchhHHHHHHHHH--------------HHhcCCCCC--------cHHHHHHHHHHHHhCeEec
Confidence 999999999999999999999999999999 766653321 1235789999999999999
Q ss_pred cchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCccccccccc
Q psy9135 257 TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPF 336 (1107)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (1107)
.+...... ... .......|+||||..|.+
T Consensus 227 ~d~~~e~~-~~~---~~~~~~~y~LPdg~~i~l----------------------------------------------- 255 (380)
T PTZ00466 227 FNMNKEKN-SSE---KALTTLPYILPDGSQILI----------------------------------------------- 255 (380)
T ss_pred CChHHHHh-hcc---ccccceeEECCCCcEEEE-----------------------------------------------
Confidence 54322111 111 113457899999988654
Q ss_pred cccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCccccc
Q psy9135 337 RCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLS 416 (1107)
Q Consensus 337 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 416 (1107)
T Consensus 256 -------------------------------------------------------------------------------- 255 (380)
T PTZ00466 256 -------------------------------------------------------------------------------- 255 (380)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCcccccCCcccccccccccCCC---CCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHH
Q psy9135 417 VLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKY 493 (1107)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~---~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~e 493 (1107)
+.|||++||+||+|. .+..||+++|.+||.+||.|+|++|++||+|+||+|++|||.+
T Consensus 256 -------------------~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~ 316 (380)
T PTZ00466 256 -------------------GSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGD 316 (380)
T ss_pred -------------------chHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHH
Confidence 578999999999994 5889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 494 RLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 494 RL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
||++||+++.|.. .+++|..++ +|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 317 RL~~EL~~l~p~~--------~~v~v~~~~-~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~ 372 (380)
T PTZ00466 317 RLLNEIRKFAPKD--------ITIRISAPP-ERKFSTFIGGSILASLATFKKIWISKQEFDEYGS 372 (380)
T ss_pred HHHHHHHHhCCCC--------ceEEEecCC-CCceeEEECchhhcCccchhhhEeEHHHHhhhCc
Confidence 9999999999863 378898766 8999999999999999999999999999999998
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-66 Score=597.95 Aligned_cols=338 Identities=24% Similarity=0.410 Sum_probs=295.0
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC-----------------chhhHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK-----------------DADDLYGLL 96 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~-----------------~~~~~~~~l 96 (1107)
.+.++||||+||+++|+|||||+.|+.++||+||+++... ..+.+.|+ +.+.+|+.+
T Consensus 4 ~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~~ 83 (376)
T PTZ00281 4 EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83 (376)
T ss_pred CcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCHHHH
Confidence 4556899999999999999999999999999999876542 12333333 344679999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEE
Q psy9135 97 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 176 (1107)
Q Consensus 97 e~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V 176 (1107)
+.+|+|+|++.|+++|+++||++|||+++++..|++|+|+|||+|++|++++++++++++|++|++||||||+|++.|+|
T Consensus 84 e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (376)
T PTZ00281 84 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHT 163 (376)
T ss_pred HHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 177 LPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 177 ~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+||+||+++.++++++++||++++++|+++ |++.+..+. ...+.+++++|||++|||+
T Consensus 164 ~PV~dG~~~~~~~~~~~~GG~~lt~~L~~l--------------L~~~~~~~~--------~~~~~~~~~~iKe~~c~v~ 221 (376)
T PTZ00281 164 VPIYEGYALPHAILRLDLAGRDLTDYMMKI--------------LTERGYSFT--------TTAEREIVRDIKEKLAYVA 221 (376)
T ss_pred EEEEecccchhheeeccCcHHHHHHHHHHH--------------HHhcCCCCC--------cHHHHHHHHHHHHhcEEec
Confidence 999999999999999999999999999999 666553321 1235789999999999999
Q ss_pred c-chhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccc
Q psy9135 257 T-MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFP 335 (1107)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1107)
. ...+.+.... .....+.|+||||+.|.+
T Consensus 222 ~d~~~~~~~~~~----~~~~~~~y~LPdg~~i~i---------------------------------------------- 251 (376)
T PTZ00281 222 LDFEAEMQTAAS----SSALEKSYELPDGQVITI---------------------------------------------- 251 (376)
T ss_pred CCchHHHHhhhc----CcccceeEECCCCCEEEe----------------------------------------------
Confidence 4 3332221111 113456899999988655
Q ss_pred ccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccc
Q psy9135 336 FRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNL 415 (1107)
Q Consensus 336 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (1107)
T Consensus 252 -------------------------------------------------------------------------------- 251 (376)
T PTZ00281 252 -------------------------------------------------------------------------------- 251 (376)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChH
Q psy9135 416 SVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492 (1107)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~ 492 (1107)
+.|||++||+||+| +.+..||+++|.+||.+||+|+|++|++||||+||+|++|||.
T Consensus 252 --------------------~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~ 311 (376)
T PTZ00281 252 --------------------GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIA 311 (376)
T ss_pred --------------------eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHH
Confidence 56899999999999 4578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 493 eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
+||++||+++.|.. .+++|++++ +|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 312 ~RL~~El~~~~p~~--------~~v~v~~~~-~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~ 368 (376)
T PTZ00281 312 DRMNKELTALAPST--------MKIKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDESGP 368 (376)
T ss_pred HHHHHHHHHhCCCC--------cceEEecCC-CCceeEEECcccccCcccHhhceeeHHHHhhhCc
Confidence 99999999999863 378999877 8999999999999999999999999999999997
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-66 Score=555.62 Aligned_cols=375 Identities=20% Similarity=0.292 Sum_probs=297.7
Q ss_pred CCCCCCCeEEEecCCceeEEeeecCcccccccccceeccC---Ccc--cccee------------------ccCchhhHH
Q psy9135 37 FGSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPH---TNK--LRNLY------------------EYKDADDLY 93 (1107)
Q Consensus 37 ~~~~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~---~~~--~~~~~------------------~~~~~~~~~ 93 (1107)
-|..+-++||||+|||++|+||||++.|++++||.+|... ... .+.++ .-++.+++|
T Consensus 6 yggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dW 85 (426)
T KOG0679|consen 6 YGGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDW 85 (426)
T ss_pred ccccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCCcccH
Confidence 3567788999999999999999999999999999999521 111 11111 123667889
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCc
Q psy9135 94 GLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSE 173 (1107)
Q Consensus 94 ~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~ 173 (1107)
|.++.+|+|.+.++|+++|.+||+|++||++|++.+||+++|++||+|+||+++++++++|++|++|+.||||||||++.
T Consensus 86 D~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~ 165 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATH 165 (426)
T ss_pred HHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCC---CCCc---------cccccccCCC
Q psy9135 174 ATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENP---DPYI---------VTVEDVENLS 241 (1107)
Q Consensus 174 T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~---~~~~---------~~~~~~~~~~ 241 (1107)
|+|+||+||+++++++++.++||++|+..+++++.- ++++...+-.++.+... .++. .+.+..++..
T Consensus 166 ~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~-~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~ 244 (426)
T KOG0679|consen 166 TSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEP-KNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYME 244 (426)
T ss_pred ceeeeeecceEeeeeeEecccchHHHHHHHHHHHhh-cCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHH
Confidence 999999999999999999999999999999999321 12221111111111100 0110 1111113334
Q ss_pred HHHHHHHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhh
Q psy9135 242 DSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLS 321 (1107)
Q Consensus 242 ~~~~e~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~ 321 (1107)
..++++.|+++|.|++...+.+.... .+++.|++|||.+.++ |.+|++++|.||.|.....
T Consensus 245 ~~v~~e~ke~v~qv~dtp~de~~~~~------i~~~~~efP~g~~~~~-G~er~ripe~lF~Ps~v~~------------ 305 (426)
T KOG0679|consen 245 QRVYQEFKESVLQVSDTPFDEEVAAQ------IPTKHFEFPDGYTLDF-GAERFRIPEYLFKPSLVKS------------ 305 (426)
T ss_pred HHHHHHHHHHHHhccCCCCccccccc------CCCccccCCCCccccc-CcceeecchhhcCcchhcc------------
Confidence 66889999999999865544332221 5678899999998777 7778888888888876200
Q ss_pred cccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccc
Q psy9135 322 VASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKD 401 (1107)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (1107)
.. +.+ .. .
T Consensus 306 ---------------------~s--------------------------~~~---------------~~--------~-- 313 (426)
T KOG0679|consen 306 ---------------------SS--------------------------KEA---------------GA--------T-- 313 (426)
T ss_pred ---------------------cc--------------------------ccc---------------cC--------C--
Confidence 00 000 00 0
Q ss_pred cccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCCCCCCCHHHHHHHHHhccCccchhhhhccEEE
Q psy9135 402 VYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAENILL 481 (1107)
Q Consensus 402 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvL 481 (1107)
++.....|+++++..||..||+|+|..|++||||
T Consensus 314 ----------------------------------------------~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nViv 347 (426)
T KOG0679|consen 314 ----------------------------------------------SHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIV 347 (426)
T ss_pred ----------------------------------------------CCCccccCchHHHHhhhccChHHHHHHhhccEEE
Confidence 0001346999999999999999999999999999
Q ss_pred EcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCC--CCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 482 TGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPA--KENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 482 tGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~--~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
|||+|+|+||.+||++||+...|. +++++++... +|++++|+||||||||++|+++||||+||||+|.
T Consensus 348 tGGtSliqG~s~RL~~ELs~~~P~---------srlki~as~~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~ 417 (426)
T KOG0679|consen 348 TGGTSLIQGFSERLNKELSKRAPS---------SRLKIIASGHTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGK 417 (426)
T ss_pred ecCcchhhhHHHHHHHHHHHhCCc---------ceEEEEecCceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhh
Confidence 999999999999999999999996 3899998764 8999999999999999999999999999999997
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-64 Score=583.41 Aligned_cols=332 Identities=21% Similarity=0.340 Sum_probs=289.7
Q ss_pred ccceEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec-----------------CCHHhhHHHHH
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY-----------------KDADDLYGLLI 791 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~-----------------~~~~~~~d~le 791 (1107)
++++||||+||+++|+|||||+.|+.++||++|+++... .++.+.| +|.+.|||.++
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 457999999999999999999999999999999886542 1233333 26678899999
Q ss_pred HHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEE
Q psy9135 792 EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLL 871 (1107)
Q Consensus 792 ~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~ 871 (1107)
.+|+|+|++.|+++|+++||+++|++++++..|++++|+|||+|++|++++.++++|++||+|++||+|||+|++.|+|+
T Consensus 84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~ 163 (375)
T PTZ00452 84 IIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV 163 (375)
T ss_pred HHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHh
Q psy9135 872 PVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 951 (1107)
Q Consensus 872 PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~ 951 (1107)
||+||++++++++++++| |+++|++|+++|++++ +.+.... ..+++++|||++|||+.++..+....
T Consensus 164 PV~dG~~l~~~~~r~~~g-G~~lt~~L~~lL~~~~--------~~~~~~~----~~~~~~~iKe~~c~v~~d~~~e~~~~ 230 (375)
T PTZ00452 164 PVFEGHQIPQAITKINLA-GRLCTDYLTQILQELG--------YSLTEPH----QRIIVKNIKERLCYTALDPQDEKRIY 230 (375)
T ss_pred EEECCEEeccceEEeecc-chHHHHHHHHHHHhcC--------CCCCCHH----HHHHHHHHHHHhccccCcHHHHHHHh
Confidence 999999999999999999 9999999999998876 2232221 24589999999999998764322111
Q ss_pred cCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC------------
Q psy9135 952 KNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET------------ 1016 (1107)
Q Consensus 952 ~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L------------ 1016 (1107)
.. .....+.|+||||+.|.+ +.|||.+||+||+|+ .+..||+++|.+||.+|| +|+|+.|
T Consensus 231 ~~---~~~~~~~y~LPDg~~i~l-~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~-~d~r~~L~~nIvL~GG~Sl 305 (375)
T PTZ00452 231 KE---SNSQDSPYKLPDGNILTI-KSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCD-LDLRQELCRNIVLSGGTTL 305 (375)
T ss_pred hc---cCCcCceEECCCCCEEEe-ehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCC-HhHHHHhhccEEEeccccc
Confidence 11 113457899999999999 899999999999996 467899999999999999 9999999
Q ss_pred -CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-c
Q psy9135 1017 -QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-I 1094 (1107)
Q Consensus 1017 -~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i 1094 (1107)
||| .+||++||++++| .+ .+++|. .+++|++++|+||||+|++++|+++||||+||+|+|+ |
T Consensus 306 ~~Gf------~~RL~~El~~~~p-~~--------~~v~v~-~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i 369 (375)
T PTZ00452 306 FPGI------ANRLSNELTNLVP-SQ--------LKIQVA-APPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSI 369 (375)
T ss_pred ccCH------HHHHHHHHHHhCC-CC--------ceeEEe-cCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcce
Confidence 888 9999999999998 21 246675 4569999999999999999999999999999999996 8
Q ss_pred cceecc
Q psy9135 1095 PDWCNL 1100 (1107)
Q Consensus 1095 ~d~~~~ 1100 (1107)
.+++|.
T Consensus 370 ~~~k~~ 375 (375)
T PTZ00452 370 VHRKCF 375 (375)
T ss_pred eeeecC
Confidence 888763
|
|
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-65 Score=569.23 Aligned_cols=331 Identities=24% Similarity=0.393 Sum_probs=290.1
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc------cceeec--------------CCHHhhHHHHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEY--------------KDADDLYGLLIEF 793 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~------~~~~~~--------------~~~~~~~d~le~i 793 (1107)
.+..+||||+||..+|+|||||+.|+.++||++|++++... ++.++| +|.+.|||+|+.|
T Consensus 5 ~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~~l~~Pie~Giv~~wd~me~i 84 (372)
T KOG0676|consen 5 DDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKRTLKYPIERGIVTDWDDMEKI 84 (372)
T ss_pred CCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccccccCccccccccchHHHHHH
Confidence 34589999999999999999999999999999999876432 344443 3677899999999
Q ss_pred HHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEE
Q psy9135 794 IRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPV 873 (1107)
Q Consensus 794 ~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV 873 (1107)
|+|+|++.|.++|+++||+++|++++|+..||+++|+|||+|++|++++..++++ |++|++||+|||+|++.|+++||
T Consensus 85 w~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~vPI 162 (372)
T KOG0676|consen 85 WHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHVVPI 162 (372)
T ss_pred HHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceeeeec
Confidence 9999999999999999999999999999999999999999999999999887777 99999999999999999999999
Q ss_pred EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhcC
Q psy9135 874 YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKN 953 (1107)
Q Consensus 874 ~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~~ 953 (1107)
+||+++++++.++++| |+++|+||+.+|.+++ +.++... ..++++++||++|||+.+.+.+ ....+
T Consensus 163 ~eG~~lp~ai~~ldl~-G~dlt~~l~~~L~~~g--------~s~~~~~----~~eIv~diKeklCyvald~~~e-~~~~~ 228 (372)
T KOG0676|consen 163 YEGYALPHAILRLDLA-GRDLTDYLLKQLRKRG--------YSFTTSA----EFEIVRDIKEKLCYVALDFEEE-EETAN 228 (372)
T ss_pred ccccccchhhheeccc-chhhHHHHHHHHHhcc--------ccccccc----HHHHHHHhHhhhcccccccchh-hhccc
Confidence 9999999999999999 9999999999999877 4444333 2459999999999999866433 33221
Q ss_pred CCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-------------C
Q psy9135 954 PDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET-------------Q 1017 (1107)
Q Consensus 954 ~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L-------------~ 1017 (1107)
.. ......|+||||+.+.+ +.|||.|||+||+|+ .+..||++++.+||.+|| +|+|+.| |
T Consensus 229 ~~--~~l~~~y~lPDg~~i~i-~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd-~dlrk~L~~nivLsGGtT~~p 304 (372)
T KOG0676|consen 229 TS--SSLESSYELPDGQKITI-GNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCD-IDLRKDLYENIVLSGGTTMFP 304 (372)
T ss_pred cc--ccccccccCCCCCEEec-CCcccccchhcCChhhcCCCCCchhHHHHHHHHhCC-hhHhHHHHhheEEeCCcccch
Confidence 11 14455699999999999 789999999999996 578999999999999999 9999999 8
Q ss_pred CCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccc
Q psy9135 1018 YFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPD 1096 (1107)
Q Consensus 1018 Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d 1096 (1107)
|| .+||++||+.+.| +. .+++|+ ++++|.+++|+||||+||+++|+++||||+||+|+|+ |.+
T Consensus 305 Gl------~~Rl~kEl~~l~P-~~--------~~ikv~-~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~ 368 (372)
T KOG0676|consen 305 GL------ADRLQKELQALAP-ST--------IKIKVI-APPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIH 368 (372)
T ss_pred hH------HHHHHHHHhhcCC-CC--------cceEEe-cCcccccceecCceeEeecchHhhccccHHHHhhhCCceee
Confidence 88 9999999999998 21 236775 5668899999999999999999999999999999996 788
Q ss_pred eecc
Q psy9135 1097 WCNL 1100 (1107)
Q Consensus 1097 ~~~~ 1100 (1107)
++|+
T Consensus 369 rk~f 372 (372)
T KOG0676|consen 369 RKCF 372 (372)
T ss_pred eccC
Confidence 8874
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=579.80 Aligned_cols=339 Identities=25% Similarity=0.393 Sum_probs=292.5
Q ss_pred CCCeEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC-----------------chhhHHHHHH
Q psy9135 41 QPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK-----------------DADDLYGLLI 97 (1107)
Q Consensus 41 ~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~-----------------~~~~~~~~le 97 (1107)
+.++||||+||+++|+||||++.|+.++||++|+++... .+..+.|+ +.+.+|+.++
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~e 84 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDME 84 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHHH
Confidence 466899999999999999999999999999999886421 11223232 3456799999
Q ss_pred HHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEE
Q psy9135 98 EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLL 177 (1107)
Q Consensus 98 ~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~ 177 (1107)
.+|+|+|.+.|++++.++||+++|++++++..|++++|+|||+|++|++++++++++++|++|++||||||+|++.|+|+
T Consensus 85 ~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~ 164 (378)
T PTZ00004 85 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 164 (378)
T ss_pred HHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEEE
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeecc
Q psy9135 178 PVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 178 PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~ 257 (1107)
||+||+++.++++++++||++++++|+++ |++.+..+ + ...+..+++++||++|||+.
T Consensus 165 pV~dG~~l~~~~~~~~~GG~~lt~~L~~l--------------L~~~~~~~----~----~~~~~~~~~~iKe~~c~v~~ 222 (378)
T PTZ00004 165 PIYEGYSLPHAIHRLDVAGRDLTEYMMKI--------------LHERGTTF----T----TTAEKEIVRDIKEKLCYIAL 222 (378)
T ss_pred EEECCEEeecceeeecccHHHHHHHHHHH--------------HHhcCCCC----C----cHHHHHHHHHHhhcceeecC
Confidence 99999999999999999999999999999 66655322 1 11257889999999999995
Q ss_pred chhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccccc
Q psy9135 258 MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFR 337 (1107)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1107)
+..+ +..... .......+.|+||||+.|.+
T Consensus 223 d~~~-~~~~~~-~~~~~~~~~y~lPdg~~i~l------------------------------------------------ 252 (378)
T PTZ00004 223 DFDE-EMGNSA-GSSDKYEESYELPDGTIITV------------------------------------------------ 252 (378)
T ss_pred CHHH-HHhhhh-cCccccceEEECCCCCEEEE------------------------------------------------
Confidence 4322 111111 11112357899999988654
Q ss_pred ccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccccc
Q psy9135 338 CWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSV 417 (1107)
Q Consensus 338 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 417 (1107)
T Consensus 253 -------------------------------------------------------------------------------- 252 (378)
T PTZ00004 253 -------------------------------------------------------------------------------- 252 (378)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCcccccCCcccccccccccCCC---CC-CCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHH
Q psy9135 418 LGTDLKKSVNPYLHFPVSGHIRETAFEVLFELD---LD-MLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKY 493 (1107)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~---~~-~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~e 493 (1107)
+.|||++||+||+|. .+ ..||+++|.+||.+||+|+|+.|++||+|+||+|++|||.+
T Consensus 253 ------------------~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~ 314 (378)
T PTZ00004 253 ------------------GSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPE 314 (378)
T ss_pred ------------------cHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHH
Confidence 578999999999984 45 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 494 RLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 494 RL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
||++||+++.|.. .+++|.+.+ +|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 315 RL~~EL~~~~p~~--------~~~~v~~~~-~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~ 370 (378)
T PTZ00004 315 RLTKELTTLAPST--------MKIKVVAPP-ERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGP 370 (378)
T ss_pred HHHHHHHHhCCCC--------ccEEEecCC-CCceeEEECcccccCccchhhhEeEHHHHhhhCc
Confidence 9999999999863 368888776 8999999999999999999999999999999998
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-63 Score=571.62 Aligned_cols=329 Identities=20% Similarity=0.346 Sum_probs=287.6
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec-----------------CCHHhhHHHHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY-----------------KDADDLYGLLIE 792 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~-----------------~~~~~~~d~le~ 792 (1107)
..+||||+||++||+|||||+.|+.++||++|+++... .++.++| +|.+.|||.+|.
T Consensus 12 ~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e~ 91 (380)
T PTZ00466 12 NQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDMEN 91 (380)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHHH
Confidence 35899999999999999999999999999999986542 1233333 356788999999
Q ss_pred HHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEE
Q psy9135 793 FIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLP 872 (1107)
Q Consensus 793 i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~P 872 (1107)
+|+|+| +.|+++|+++||+++|++++++..|++++|+|||+|++|+++++++++||+||+|++||+|||+|++.|+|+|
T Consensus 92 iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~P 170 (380)
T PTZ00466 92 IWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVS 170 (380)
T ss_pred HHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEEE
Confidence 999998 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhc
Q psy9135 873 VYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAK 952 (1107)
Q Consensus 873 V~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~ 952 (1107)
|+||+++.++++++++| |+++|++|+++|++++ +.+.... ..++++++||++|||+.++..+. ...
T Consensus 171 V~~G~~~~~~~~~~~~G-G~~lt~~L~~lL~~~~--------~~~~~~~----~~~~v~~iKe~~c~v~~d~~~e~-~~~ 236 (380)
T PTZ00466 171 IYEGYSITNTITRTDVA-GRDITTYLGYLLRKNG--------HLFNTSA----EMEVVKNMKENCCYVSFNMNKEK-NSS 236 (380)
T ss_pred EECCEEeecceeEecCc-hhHHHHHHHHHHHhcC--------CCCCcHH----HHHHHHHHHHhCeEecCChHHHH-hhc
Confidence 99999999999999999 9999999999998876 2222111 24589999999999998764322 211
Q ss_pred CCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-------------
Q psy9135 953 NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET------------- 1016 (1107)
Q Consensus 953 ~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L------------- 1016 (1107)
. .....+.|+||||+.|.+ +.|||++||+||+|+ .+..||+++|.+||.+|| +|+|+.|
T Consensus 237 ~---~~~~~~~y~LPdg~~i~l-~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~-~d~r~~L~~nIvL~GG~Sl~ 311 (380)
T PTZ00466 237 E---KALTTLPYILPDGSQILI-GSERYRAPEVLFNPSILGLEYLGLSELIVTSITRAD-MDLRRTLYSHIVLSGGTTMF 311 (380)
T ss_pred c---ccccceeEECCCCcEEEE-chHHhcCcccccCccccCCCCCCHHHHHHHHHHhCC-hhhHHHHhhcEEEeCCcccc
Confidence 1 113457899999999999 899999999999997 378899999999999999 9999999
Q ss_pred CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-cc
Q psy9135 1017 QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IP 1095 (1107)
Q Consensus 1017 ~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~ 1095 (1107)
||| .+||++||+++.| .+ .+++|. .+++|++++|+||||+|++++|+++||||+||+|+|+ |.
T Consensus 312 ~Gf------~~RL~~EL~~l~p-~~--------~~v~v~-~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv 375 (380)
T PTZ00466 312 HGF------GDRLLNEIRKFAP-KD--------ITIRIS-APPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVIL 375 (380)
T ss_pred CCH------HHHHHHHHHHhCC-CC--------ceEEEe-cCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhh
Confidence 888 9999999999998 21 236665 5569999999999999999999999999999999996 88
Q ss_pred ceecc
Q psy9135 1096 DWCNL 1100 (1107)
Q Consensus 1096 d~~~~ 1100 (1107)
+++|.
T Consensus 376 ~rk~~ 380 (380)
T PTZ00466 376 HRKTF 380 (380)
T ss_pred eeecC
Confidence 88763
|
|
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=505.38 Aligned_cols=345 Identities=23% Similarity=0.362 Sum_probs=299.0
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccCCc--------cccceeccC-----------------chhhHHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN--------KLRNLYEYK-----------------DADDLYGLL 96 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~--------~~~~~~~~~-----------------~~~~~~~~l 96 (1107)
..+||.|||++..|+||||+..|.++||++||||--. ..+++.+|+ +.+.+|++|
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM 83 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDM 83 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHH
Confidence 5688999999999999999999999999999998321 114555555 445679999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEE
Q psy9135 97 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 176 (1107)
Q Consensus 97 e~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V 176 (1107)
+.+|+|.|.++|+++|.+.++++|||++||.++||+|+|++||+|+|.++|++.++++++|+.|..||+|||.|.+.|||
T Consensus 84 ~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi 163 (389)
T KOG0677|consen 84 EHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHI 163 (389)
T ss_pred HHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 177 LPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 177 ~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+||+||+++++-.+|++++|+++|+||.++ |...|+.+. +..+.+.+++|||++||++
T Consensus 164 ~PVye~~~l~HLtrRldvAGRdiTryLi~L--------------Ll~rGYafN--------~tADFETVR~iKEKLCYis 221 (389)
T KOG0677|consen 164 VPVYEGFVLPHLTRRLDVAGRDITRYLIKL--------------LLRRGYAFN--------HTADFETVREIKEKLCYIS 221 (389)
T ss_pred eeeecceehhhhhhhccccchhHHHHHHHH--------------HHhhccccc--------cccchHHHHHHHhhheeEe
Confidence 999999999999999999999999999999 777776553 4578999999999999999
Q ss_pred -cchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccc
Q psy9135 257 -TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFP 335 (1107)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1107)
+.+.+.+.....+ ...+.|+||||..|.+
T Consensus 222 Yd~e~e~kLalETT----vLv~~YtLPDGRvIkv---------------------------------------------- 251 (389)
T KOG0677|consen 222 YDLELEQKLALETT----VLVESYTLPDGRVIKV---------------------------------------------- 251 (389)
T ss_pred echhhhhHhhhhhe----eeeeeeecCCCcEEEe----------------------------------------------
Confidence 5555555544332 4568899999988655
Q ss_pred ccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccc
Q psy9135 336 FRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNL 415 (1107)
Q Consensus 336 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (1107)
T Consensus 252 -------------------------------------------------------------------------------- 251 (389)
T KOG0677|consen 252 -------------------------------------------------------------------------------- 251 (389)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChH
Q psy9135 416 SVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492 (1107)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~ 492 (1107)
|.|||.+||+||+| +.+..|+++++.++|+..|+|+|.++|++|+|+||+++-||+.
T Consensus 252 --------------------G~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLP 311 (389)
T KOG0677|consen 252 --------------------GGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLP 311 (389)
T ss_pred --------------------cceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCc
Confidence 67999999999999 4789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCC---CccccccceeEEEEcCCCCCccccchhHHhhcCC-cccccccccHHHHHhcCCC
Q psy9135 493 YRLLQELRTLIESP---PYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAAT-ESYNKRAIQKDAYLNNNMT 559 (1107)
Q Consensus 493 eRL~~EL~~~~~~~---~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl-~~f~~~~ITk~eYeE~G~~ 559 (1107)
.||++||+++.-.. ...+.+...++++-.+| .|.+..++||+++|++ ..-.++|+||+||+|.|..
T Consensus 312 SRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPP-rRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~ 381 (389)
T KOG0677|consen 312 SRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPP-RRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGIN 381 (389)
T ss_pred HHHHHHHHHHHHHHHHcCChhhhhheEEeccCCC-ccceeEEEchHHHHHHhcCCccceecHHHHHhhhHH
Confidence 99999999863211 11222333456665555 8999999999999986 5567899999999999983
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=566.90 Aligned_cols=333 Identities=22% Similarity=0.356 Sum_probs=289.1
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec-----------------CCHHhhHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY-----------------KDADDLYGLL 790 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~-----------------~~~~~~~d~l 790 (1107)
++.++||||+||+++|+|||||+.|+.++||++|+++... .++.+.| +|.+.+||.+
T Consensus 4 ~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dwd~~ 83 (376)
T PTZ00281 4 EDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM 83 (376)
T ss_pred CcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCHHHH
Confidence 3557999999999999999999999999999999875532 1223333 3566789999
Q ss_pred HHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEE
Q psy9135 791 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 870 (1107)
Q Consensus 791 e~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v 870 (1107)
+.+|+|+|++.|+++|+++||+++||+++++..|++++|+|||+|++|+++++++++|++|++|++||||||+|++.|+|
T Consensus 84 e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (376)
T PTZ00281 84 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHT 163 (376)
T ss_pred HHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
+||+||+++.++++++++| |++++++|+++|.+++ +.+.... +.+++++|||++|||+.+...+...
T Consensus 164 ~PV~dG~~~~~~~~~~~~G-G~~lt~~L~~lL~~~~--------~~~~~~~----~~~~~~~iKe~~c~v~~d~~~~~~~ 230 (376)
T PTZ00281 164 VPIYEGYALPHAILRLDLA-GRDLTDYMMKILTERG--------YSFTTTA----EREIVRDIKEKLAYVALDFEAEMQT 230 (376)
T ss_pred EEEEecccchhheeeccCc-HHHHHHHHHHHHHhcC--------CCCCcHH----HHHHHHHHHHhcEEecCCchHHHHh
Confidence 9999999999999999999 9999999999998876 2222111 2458999999999999765332221
Q ss_pred hcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-----------
Q psy9135 951 AKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET----------- 1016 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L----------- 1016 (1107)
.. . +....+.|+||||+.|.+ +.|||.+||+||+|+ .+..||+++|.++|.+|| +|+|+.|
T Consensus 231 ~~-~--~~~~~~~y~LPdg~~i~i-~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~-~d~r~~L~~nIvl~GG~s 305 (376)
T PTZ00281 231 AA-S--SSALEKSYELPDGQVITI-GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCD-VDIRKDLYGNVVLSGGTT 305 (376)
T ss_pred hh-c--CcccceeEECCCCCEEEe-eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCC-hhHHHHHHhhccccCccc
Confidence 11 1 113457899999999999 899999999999996 467899999999999999 9999998
Q ss_pred --CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-
Q psy9135 1017 --QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV- 1093 (1107)
Q Consensus 1017 --~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~- 1093 (1107)
||| .+||++||+++.| .+ .+++|+ .+++|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 306 ~~~Gf------~~RL~~El~~~~p-~~--------~~v~v~-~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~ 369 (376)
T PTZ00281 306 MFPGI------ADRMNKELTALAP-ST--------MKIKII-APPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPS 369 (376)
T ss_pred cCcCH------HHHHHHHHHHhCC-CC--------cceEEe-cCCCCceeEEECcccccCcccHhhceeeHHHHhhhCch
Confidence 888 9999999999998 21 246775 4558999999999999999999999999999999996
Q ss_pred ccceecc
Q psy9135 1094 IPDWCNL 1100 (1107)
Q Consensus 1094 i~d~~~~ 1100 (1107)
|.+++|.
T Consensus 370 ~~~~k~~ 376 (376)
T PTZ00281 370 IVHRKCF 376 (376)
T ss_pred heeeecC
Confidence 8888774
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-61 Score=566.07 Aligned_cols=351 Identities=22% Similarity=0.354 Sum_probs=286.2
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccCCcc---------ccceeccC-----------------chhhHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK---------LRNLYEYK-----------------DADDLYGL 95 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~---------~~~~~~~~-----------------~~~~~~~~ 95 (1107)
.++||||+||+++|+||||++.|+.++||++|+++... ..+.+.|+ +.+.+|+.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 55899999999999999999999999999999875531 11344444 34567999
Q ss_pred HHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccC----------CCceEE
Q psy9135 96 LIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL----------GVNTGL 165 (1107)
Q Consensus 96 le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~----------g~~tgl 165 (1107)
++.+|+|+|++.|+++|.++|++++||+++++..|++++|+|||+|++|+++++.++++|+|++ |++|||
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHH
Q psy9135 166 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSII 245 (1107)
Q Consensus 166 VVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
|||+|++.|+|+||+||+++.++++++++||+++|++|.++ |++.+..++ ......++
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~l--------------L~~~~~~~~--------~~~~~~~~ 221 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQM--------------LRERGEPIP--------AEDILLLA 221 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHH--------------HHHcCCCCC--------cHHHHHHH
Confidence 99999999999999999999999999999999999999999 766654321 11246789
Q ss_pred HHHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccC
Q psy9135 246 EDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASS 325 (1107)
Q Consensus 246 e~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~ 325 (1107)
++|||++||++.+..+ +...... .+......|.+||...
T Consensus 222 ~~iKe~~c~v~~d~~~-e~~~~~~-~~~~~~~~~~~~d~~~--------------------------------------- 260 (414)
T PTZ00280 222 QRIKEKYCYVAPDIAK-EFEKYDS-DPKNHFKKYTAVNSVT--------------------------------------- 260 (414)
T ss_pred HHHHHhcCcccCcHHH-HHHHhhc-CcccccceEECCCCCC---------------------------------------
Confidence 9999999999853221 1111100 0001223344444211
Q ss_pred CCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccC
Q psy9135 326 DGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLN 405 (1107)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 405 (1107)
T Consensus 261 -------------------------------------------------------------------------------- 260 (414)
T PTZ00280 261 -------------------------------------------------------------------------------- 260 (414)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCCC----CCCCHHHHHHHHHhccCccchhhhhccEEE
Q psy9135 406 NNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLKTGRDMKKPLAENILL 481 (1107)
Q Consensus 406 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~----~~~gL~e~I~~sI~~~~~d~r~~L~~nIvL 481 (1107)
.....+.++.|||++||+||+|.. ...||+++|.++|++||+|+|++|++||+|
T Consensus 261 ----------------------g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL 318 (414)
T PTZ00280 261 ----------------------KKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVL 318 (414)
T ss_pred ----------------------CCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEE
Confidence 000123347899999999999942 356999999999999999999999999999
Q ss_pred EcCCCCccChHHHHHHHHHhhcCCCCccc--------cccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHH
Q psy9135 482 TGGTAMTPGLKYRLLQELRTLIESPPYKD--------KLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553 (1107)
Q Consensus 482 tGG~S~ipGf~eRL~~EL~~~~~~~~~~~--------~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eY 553 (1107)
+||+|++|||.+||++||+++++...+.. .....+++|.+++ ++.+++|+||||+|++++|+++||||+||
T Consensus 319 ~GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-~~~~~~W~GgSilas~~~f~~~~itk~eY 397 (414)
T PTZ00280 319 SGGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHP-RQRYAVWYGGSMLASSPEFEKVCHTKAEY 397 (414)
T ss_pred eCCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCC-ccceeEEEChhhcccCcchhhheEEHHHH
Confidence 99999999999999999999875310000 0012468888877 89999999999999999999999999999
Q ss_pred HhcCC
Q psy9135 554 LNNNM 558 (1107)
Q Consensus 554 eE~G~ 558 (1107)
+|+|+
T Consensus 398 ~E~G~ 402 (414)
T PTZ00280 398 DEYGP 402 (414)
T ss_pred hccCh
Confidence 99998
|
|
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-61 Score=491.33 Aligned_cols=332 Identities=22% Similarity=0.323 Sum_probs=288.1
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCC--------CccceeecC-----------------CHHhhHHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN--------KLRNLYEYK-----------------DADDLYGLL 790 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~--------~~~~~~~~~-----------------~~~~~~d~l 790 (1107)
+++||.|+|+.++|+||||+..|.++||+.||||.-. ..|++.+|+ +++.+||+|
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwddM 83 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWDDM 83 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChHHH
Confidence 4799999999999999999999999999999999432 125555554 677789999
Q ss_pred HHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEE
Q psy9135 791 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 870 (1107)
Q Consensus 791 e~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v 870 (1107)
+.+|+|.|.+.|+++|.++.+++|||+++|.+.||+|+|++||+++|.++|++-|+++++||.|..||+|||.|++.|||
T Consensus 84 ~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVTHi 163 (389)
T KOG0677|consen 84 EHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHI 163 (389)
T ss_pred HHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHH-HHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERS-AEI 949 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~-~~~ 949 (1107)
+||+||++++|-.+|++++ |+++|.||-++|..+| |.+. +..+.+.+++|||++||++-+... ...
T Consensus 164 ~PVye~~~l~HLtrRldvA-GRdiTryLi~LLl~rG--------YafN----~tADFETVR~iKEKLCYisYd~e~e~kL 230 (389)
T KOG0677|consen 164 VPVYEGFVLPHLTRRLDVA-GRDITRYLIKLLLRRG--------YAFN----HTADFETVREIKEKLCYISYDLELEQKL 230 (389)
T ss_pred eeeecceehhhhhhhcccc-chhHHHHHHHHHHhhc--------cccc----cccchHHHHHHHhhheeEeechhhhhHh
Confidence 9999999999999999999 9999999999999999 5554 334567999999999999955432 222
Q ss_pred HhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC----------
Q psy9135 950 AAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET---------- 1016 (1107)
Q Consensus 950 ~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L---------- 1016 (1107)
+.+. .....+|+||||.+|++ |.|||.+||.||+|. .+.+|+.+++.++|+..| +|+|.++
T Consensus 231 alET----TvLv~~YtLPDGRvIkv-G~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaD-iD~R~~lYkhIVLSGGs 304 (389)
T KOG0677|consen 231 ALET----TVLVESYTLPDGRVIKV-GGERFEAPEALFQPHLINVEGPGVAELLFNTIQAAD-IDIRSELYKHIVLSGGS 304 (389)
T ss_pred hhhh----eeeeeeeecCCCcEEEe-cceeccCchhhcCcceeccCCCcHHHHHHHHHHHhc-cchHHHHHhHeeecCCc
Confidence 2221 15568999999999999 899999999999996 478999999999999999 9999988
Q ss_pred ---CCCCCCCCccchHHHHHhhhhCCCcccc-cccceeeEEEE-eCCCCcceehhhhHHHhhc-CCCccceeeeHHHHhh
Q psy9135 1017 ---QYFPFRCWVNTRTPEKLCCLVGWSNICC-YKLFIKNFKFH-EFPAKENYVAWLGGAIFAA-TESYNKRAIQKDVYLN 1090 (1107)
Q Consensus 1017 ---~Gf~~~~~~~eRL~~EL~~l~p~~~~~~-~~~~~~~~~v~-~~~~~~~~~aW~GgSIlas-l~~f~~~~ITk~eYeE 1090 (1107)
||+ ..||++||+++.- +...+ +.-...++++. ..|+.|.+.+|+||+++|+ +..-+++|+||+||+|
T Consensus 305 tMYPGL------PSRLEkElkqlyl-~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE 377 (389)
T KOG0677|consen 305 TMYPGL------PSRLEKELKQLYL-DRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQE 377 (389)
T ss_pred ccCCCC------cHHHHHHHHHHHH-HHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHh
Confidence 999 9999999999864 11111 11123455555 4677999999999999999 5566789999999999
Q ss_pred cCC
Q psy9135 1091 NNV 1093 (1107)
Q Consensus 1091 ~G~ 1093 (1107)
.|.
T Consensus 378 ~G~ 380 (389)
T KOG0677|consen 378 EGI 380 (389)
T ss_pred hhH
Confidence 996
|
|
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=519.68 Aligned_cols=334 Identities=20% Similarity=0.283 Sum_probs=285.0
Q ss_pred ccccceEEEecCcceEEEeccCCCCccEEEecceeccCC-----CCccce------------------eecCCHHhhHHH
Q psy9135 733 RTLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT-----NKLRNL------------------YEYKDADDLYGL 789 (1107)
Q Consensus 733 ~~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~-----~~~~~~------------------~~~~~~~~~~d~ 789 (1107)
.++.++||||+||+++|+||||++.|+.++||.+|.... .+.+.. ...+|.+.|||.
T Consensus 8 gdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD~ 87 (426)
T KOG0679|consen 8 GDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDAEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWDL 87 (426)
T ss_pred ccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCccccccceEeechhccCCCCCCeeccchhcCCcccHHH
Confidence 456689999999999999999999999999999994211 111111 123488899999
Q ss_pred HHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceE
Q psy9135 790 LIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEAT 869 (1107)
Q Consensus 790 le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~ 869 (1107)
++.+|+|.|.+.|+++|.+||++++||+++++..|++++|++||+++||++|++++++|++||+|+.||||||||++.|+
T Consensus 88 ~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~s 167 (426)
T KOG0679|consen 88 FEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHTS 167 (426)
T ss_pred HHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhh---------------hcc--------c
Q psy9135 870 LLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDV---------------ENL--------S 926 (1107)
Q Consensus 870 v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~---------------~~l--------~ 926 (1107)
|+||+||+++.+++.+.++| |++|+..++++|...+ ++..+.|.+..++. .++ .
T Consensus 168 vsPV~DG~Vlqk~vvks~la-GdFl~~~~~q~l~~~~--iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~ 244 (426)
T KOG0679|consen 168 VSPVHDGYVLQKGVVKSPLA-GDFLNDQCRQLLEPKN--IEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYME 244 (426)
T ss_pred eeeeecceEeeeeeEecccc-hHHHHHHHHHHHhhcC--cccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999886 33333333211110 011 1
Q ss_pred HHHHHHHHHhceeeccchHHHHHHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCC---------------
Q psy9135 927 DSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL--------------- 991 (1107)
Q Consensus 927 ~~~v~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~--------------- 991 (1107)
..++++.|+.+|.|.+.+.+++.... -..++|++|||.+.++ |.|||+.||.||+|+.
T Consensus 245 ~~v~~e~ke~v~qv~dtp~de~~~~~------i~~~~~efP~g~~~~~-G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n 317 (426)
T KOG0679|consen 245 QRVYQEFKESVLQVSDTPFDEEVAAQ------IPTKHFEFPDGYTLDF-GAERFRIPEYLFKPSLVKSSSKEAGATSHIN 317 (426)
T ss_pred HHHHHHHHHHHHhccCCCCccccccc------CCCccccCCCCccccc-CcceeecchhhcCcchhccccccccCCCCCc
Confidence 34788889999988866543332221 5678999999999999 9999999999999962
Q ss_pred CCCcHHHHHHHHHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeC-
Q psy9135 992 DMLNIATIILDSLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF- 1057 (1107)
Q Consensus 992 ~~~gL~~~I~~sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~- 1057 (1107)
...|+++++..||..|| +|+|..| +|| .+||++||..+.|. .+++++..
T Consensus 318 ~~lG~~~lv~sSi~~cD-vdiR~~L~~nVivtGGtSliqG~------s~RL~~ELs~~~P~----------srlki~as~ 380 (426)
T KOG0679|consen 318 TMLGLPHLVYSSINMCD-VDIRSSLLGNVIVTGGTSLIQGF------SERLNKELSKRAPS----------SRLKIIASG 380 (426)
T ss_pred cccCchHHHHhhhccCh-HHHHHHhhccEEEecCcchhhhH------HHHHHHHHHHhCCc----------ceEEEEecC
Confidence 34699999999999999 9999999 999 99999999999992 25677743
Q ss_pred -CCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC
Q psy9135 1058 -PAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV 1093 (1107)
Q Consensus 1058 -~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~ 1093 (1107)
..+|++++|+||||||||++|+++||+|+||||.|.
T Consensus 381 ~t~eR~~~~WlGGSILASLgtFqq~WiSKqEYEE~G~ 417 (426)
T KOG0679|consen 381 HTVERRFQSWLGGSILASLGTFQQLWISKQEYEEVGK 417 (426)
T ss_pred ceeeehhhhhhhhHHHhccccHHHHhhhHHHHHHhhh
Confidence 359999999999999999999999999999999997
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-60 Score=557.63 Aligned_cols=350 Identities=30% Similarity=0.480 Sum_probs=278.7
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCcccc-ceec-----------------cCchhhHHHHHHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLR-NLYE-----------------YKDADDLYGLLIEFIR 101 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~-~~~~-----------------~~~~~~~~~~le~i~~ 101 (1107)
++.++||||+||+++|+|||||+.|+.++|++++++...... ..+. .++.+.+|+.++.+|+
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~ 81 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSPRSNLELRSPIENGVIVDWDALEEIWD 81 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHTGTGEEEEESEETTEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccchhheeeeeeccccccccccccccccc
Confidence 578899999999999999999999999999999988765421 1111 1245568999999999
Q ss_pred HHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEeec
Q psy9135 102 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYE 181 (1107)
Q Consensus 102 ~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV~d 181 (1107)
|+|.+.|+++++++|||+++|+++++..|++++|+|||+|++|++++++++++|+|++|++||||||+|++.|+|+||+|
T Consensus 82 ~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~d 161 (393)
T PF00022_consen 82 YIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVD 161 (393)
T ss_dssp HHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEET
T ss_pred cccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeee
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCC--Cccc-------cccccCCCHHHHHHHHHhc
Q psy9135 182 GVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDP--YIVT-------VEDVENLSDSIIEDIKVCS 252 (1107)
Q Consensus 182 G~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~--~~~~-------~~~~~~~~~~~~e~iKe~~ 252 (1107)
|+++.++++++++||++++++|+++ |++++.... +... .......+..+++++|+++
T Consensus 162 G~~~~~~~~~~~~GG~~lt~~l~~l--------------L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~ 227 (393)
T PF00022_consen 162 GYVLPHSIKRSPIGGDDLTEYLKEL--------------LKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEEC 227 (393)
T ss_dssp TEE-GGGBEEES-SHHHHHHHHHHH--------------HHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHH--------------HHhhccccccccccccccccccccccchhhhccchhccchh
Confidence 9999999999999999999999999 555322211 1100 0111223578999999999
Q ss_pred eeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCccccc
Q psy9135 253 CFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQ 332 (1107)
Q Consensus 253 c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1107)
|+++......+..... ......|+||||+.+.+ +.+|+.++|.||+|...
T Consensus 228 ~~v~~~~~~~~~~~~~----~~~~~~~~lPdg~~i~~-~~er~~~~E~LF~p~~~------------------------- 277 (393)
T PF00022_consen 228 CYVSEDPDEEQEEQAS----ENPEKSYELPDGQTIIL-GKERFRIPEILFNPSLI------------------------- 277 (393)
T ss_dssp HSGGSSHHHHHHHHHC----STTTEEEE-TTSSEEEE-STHHHHHHHTTTSGGGG-------------------------
T ss_pred hhcccccccccccccc----cccceeccccccccccc-ccccccccccccccccc-------------------------
Confidence 9999766532221111 15678899999987666 34444444444444431
Q ss_pred cccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCc
Q psy9135 333 YFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDW 412 (1107)
Q Consensus 333 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~ 412 (1107)
T Consensus 278 -------------------------------------------------------------------------------- 277 (393)
T PF00022_consen 278 -------------------------------------------------------------------------------- 277 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCCCCcccccCCcccccccccccCCCC-------CCCCHHHHHHHHHhccCccchhhhhccEEEEcCC
Q psy9135 413 CNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDL-------DMLNIATIILDSLLKTGRDMKKPLAENILLTGGT 485 (1107)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~-------~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~ 485 (1107)
+. +..||+++|.++|++||.|+|+.|++||+||||+
T Consensus 278 -------------------------------------~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~ 320 (393)
T PF00022_consen 278 -------------------------------------GIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGS 320 (393)
T ss_dssp -------------------------------------TSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGG
T ss_pred -------------------------------------cccccccccccchhhhhhhhhhhccccccccccccceEEeccc
Confidence 11 2359999999999999999999999999999999
Q ss_pred CCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 486 AMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 486 S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
|++|||.+||++||+.+.+.. .+++|+..+.+|.+++|+||||+|++++|+++||||+||+|+|+
T Consensus 321 S~i~G~~eRL~~eL~~~~~~~--------~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~ 385 (393)
T PF00022_consen 321 SLIPGFKERLQQELRSLLPSS--------TKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGP 385 (393)
T ss_dssp GGSTTHHHHHHHHHHHHSGTT--------STEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGG
T ss_pred ccccchHHHHHHHhhhhhhcc--------ccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCc
Confidence 999999999999999997763 48999876658999999999999999999999999999999998
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-60 Score=551.58 Aligned_cols=334 Identities=21% Similarity=0.335 Sum_probs=288.4
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec-----------------CCHHhhHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY-----------------KDADDLYGLL 790 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~-----------------~~~~~~~d~l 790 (1107)
.+.++||||+||+++|+||||++.|+.++||++++++... .+..+.| +|.+.|||.+
T Consensus 4 ~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~d~~ 83 (378)
T PTZ00004 4 EETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNWDDM 83 (378)
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCHHHH
Confidence 3456899999999999999999999999999999876421 1122222 3567789999
Q ss_pred HHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEE
Q psy9135 791 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 870 (1107)
Q Consensus 791 e~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v 870 (1107)
+.+|+|+|++.|+++|+++||+++|++++++..|++++|+|||+|++|+++++++++||+|++|++||+|||+|++.|+|
T Consensus 84 e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v 163 (378)
T PTZ00004 84 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 163 (378)
T ss_pred HHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
+||+||+++.++++++++| |++++++|+++|++++ +.++..+ ..+++++|||++|||+.+...+ ..
T Consensus 164 ~pV~dG~~l~~~~~~~~~G-G~~lt~~L~~lL~~~~--------~~~~~~~----~~~~~~~iKe~~c~v~~d~~~~-~~ 229 (378)
T PTZ00004 164 VPIYEGYSLPHAIHRLDVA-GRDLTEYMMKILHERG--------TTFTTTA----EKEIVRDIKEKLCYIALDFDEE-MG 229 (378)
T ss_pred EEEECCEEeecceeeeccc-HHHHHHHHHHHHHhcC--------CCCCcHH----HHHHHHHHhhcceeecCCHHHH-Hh
Confidence 9999999999999999999 9999999999998876 2222222 2458999999999999876432 22
Q ss_pred hcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CC-CCcHHHHHHHHHHcCCcccccccC----------
Q psy9135 951 AKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LD-MLNIATIILDSLLSVASSDGREET---------- 1016 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~-~~gL~~~I~~sI~~~~~~d~r~~L---------- 1016 (1107)
.... ......+.|+||||+.+.+ +.|||.+||+||+|+ .+ ..||+++|.+||.+|| +|+|+.|
T Consensus 230 ~~~~-~~~~~~~~y~lPdg~~i~l-~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~-~d~r~~L~~nIvl~GG~ 306 (378)
T PTZ00004 230 NSAG-SSDKYEESYELPDGTIITV-GSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCD-IDIRKDLYGNIVLSGGT 306 (378)
T ss_pred hhhc-CccccceEEECCCCCEEEE-cHHHeeCcccccChhhcCccccCChHHHHHHHHHhCC-hhHHHHHHhhEEeccch
Confidence 1111 1112357899999999999 899999999999996 34 7899999999999999 9999999
Q ss_pred ---CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC
Q psy9135 1017 ---QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV 1093 (1107)
Q Consensus 1017 ---~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~ 1093 (1107)
||| .+||++||++++| .+ .+++|. .+++|++++|+||||+|++++|+++||||+||+|+|+
T Consensus 307 s~~~Gf------~~RL~~EL~~~~p-~~--------~~~~v~-~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~ 370 (378)
T PTZ00004 307 TMYRGL------PERLTKELTTLAP-ST--------MKIKVV-APPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGP 370 (378)
T ss_pred hcCcCH------HHHHHHHHHHhCC-CC--------ccEEEe-cCCCCceeEEECcccccCccchhhhEeEHHHHhhhCc
Confidence 888 9999999999998 21 236665 4558999999999999999999999999999999996
Q ss_pred -ccceecc
Q psy9135 1094 -IPDWCNL 1100 (1107)
Q Consensus 1094 -i~d~~~~ 1100 (1107)
|.+++|+
T Consensus 371 ~~~~rk~~ 378 (378)
T PTZ00004 371 SIVHRKCF 378 (378)
T ss_pred ceEEeecC
Confidence 8888764
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-58 Score=483.58 Aligned_cols=359 Identities=23% Similarity=0.318 Sum_probs=303.9
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCccccceec-------------------cCchhhHHHHHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYE-------------------YKDADDLYGLLIEFI 100 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~-------------------~~~~~~~~~~le~i~ 100 (1107)
|++++||+|||+|++|+|+|+++.|. ++||++.|.+.++.+ .|. -++-..+|+....+|
T Consensus 1 m~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~rr-~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vW 78 (400)
T KOG0680|consen 1 METTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGRRR-SFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVW 78 (400)
T ss_pred CCCceEEEcCCceeEEeccCCCCCce-eccchhhhcccccch-hhhhhhhhhccCccceEEeehhhcceeEeehhHHHHH
Confidence 57899999999999999999999998 899999998877642 111 124456799999999
Q ss_pred HHHHhhc-cccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccC-----------CCceEEEEE
Q psy9135 101 RKIFFKY-FVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL-----------GVNTGLVLD 168 (1107)
Q Consensus 101 ~~~~~~~-L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~-----------g~~tglVVD 168 (1107)
+++|.+. ++++.+++++++|||.++-+...+.+.|+|||+|+|.+++-...+.++.+-. ...+++|||
T Consensus 79 Dy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVID 158 (400)
T KOG0680|consen 79 DYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVID 158 (400)
T ss_pred HHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEe
Confidence 9999654 3466789999999999999999999999999999999999999999988761 124899999
Q ss_pred eCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHH
Q psy9135 169 IGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDI 248 (1107)
Q Consensus 169 iG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~i 248 (1107)
+|++.|+|+||++|.+..++++|+++||+.+|++|++.+|+||+ ++|+| ..++++|
T Consensus 159 sGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~l---NvmdE---------------------T~vVNei 214 (400)
T KOG0680|consen 159 SGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHL---NVMDE---------------------TYVVNEI 214 (400)
T ss_pred CCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhh---cccch---------------------hhhhhhh
Confidence 99999999999999999999999999999999999999999985 56666 5789999
Q ss_pred HHhceeeccc-hhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCC
Q psy9135 249 KVCSCFVTTM-ERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDG 327 (1107)
Q Consensus 249 Ke~~c~v~~~-~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1107)
||.+|||+++ ..+.+.++.. .........|.|||.++... |+.|..
T Consensus 215 KEdvcfVSqnF~~~m~~~~~k-~~~~~~~i~YvLPDF~T~k~-Gyvr~~------------------------------- 261 (400)
T KOG0680|consen 215 KEDVCFVSQNFKEDMDIAKTK-FQENKVMIDYVLPDFSTSKR-GYVRNE------------------------------- 261 (400)
T ss_pred hhheEEechhhHHHHHHHhhc-cccceeEEEEecCCcccccc-eeEecC-------------------------------
Confidence 9999999964 3334433322 11225678999999998432 111100
Q ss_pred ccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCC
Q psy9135 328 REETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNN 407 (1107)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 407 (1107)
T Consensus 262 -------------------------------------------------------------------------------- 261 (400)
T KOG0680|consen 262 -------------------------------------------------------------------------------- 261 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcC
Q psy9135 408 VIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGG 484 (1107)
Q Consensus 408 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG 484 (1107)
......++|++.+++|||.+||+||+| +++++||+|+|.+||..||.++|+.|+.|||++||
T Consensus 262 ---------------~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGG 326 (400)
T KOG0680|consen 262 ---------------DVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGG 326 (400)
T ss_pred ---------------CCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecC
Confidence 001112347888999999999999999 58899999999999999999999999999999999
Q ss_pred CCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCCCCccc
Q psy9135 485 TAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNMTYMEF 563 (1107)
Q Consensus 485 ~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~~~~~~ 563 (1107)
++++|||.+||..||++++|.+ +.++|..+ .||..-+|.||+-++.+++|..+||||+||+|||+ +|+
T Consensus 327 n~~fPgF~~RL~~Elr~l~P~d--------~~v~V~~p-~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~--~~~ 394 (400)
T KOG0680|consen 327 NSNFPGFRQRLARELRSLLPAD--------WEVSVSVP-EDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP--SWC 394 (400)
T ss_pred ccCCcchHHHHHHHHHhhCCcc--------ceEEEecC-CCcceeeehhccccccCcchhcceecHhhHhhcCc--hhh
Confidence 9999999999999999999974 68999876 49999999999999999999999999999999998 665
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-58 Score=533.18 Aligned_cols=338 Identities=25% Similarity=0.399 Sum_probs=290.4
Q ss_pred CeEEEecCCceeEEeeecCcccccccccceeccCCccc-----cceeccC-----------------chhhHHHHHHHHH
Q psy9135 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-----RNLYEYK-----------------DADDLYGLLIEFI 100 (1107)
Q Consensus 43 ~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~-----~~~~~~~-----------------~~~~~~~~le~i~ 100 (1107)
++||||+||+++|+||+|++.|+.++||++++++.... ..++.|+ +.+.+|+.++.+|
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~ 81 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIW 81 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHH
Confidence 68999999999999999999999999999998865432 1233333 3456799999999
Q ss_pred HHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEee
Q psy9135 101 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVY 180 (1107)
Q Consensus 101 ~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV~ 180 (1107)
+|+|.+.|+++++++|+++++|.++++..|++++|++||.|++|++++++++++++|++|.++|+|||+|++.|+|+||+
T Consensus 82 ~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~ 161 (373)
T smart00268 82 DYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVV 161 (373)
T ss_pred HHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEE
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeeccchh
Q psy9135 181 EGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMER 260 (1107)
Q Consensus 181 dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~~~~ 260 (1107)
||+++.++++++++||++++++|.++ |++.+... . ...+...++++||++||++....
T Consensus 162 ~G~~~~~~~~~~~~GG~~l~~~l~~~--------------l~~~~~~~--~------~~~~~~~~~~iKe~~~~v~~~~~ 219 (373)
T smart00268 162 DGYVLPHAIKRIDIAGRDLTDYLKEL--------------LSERGYQF--N------SSAEFEIVREIKEKLCYVAEDFE 219 (373)
T ss_pred CCEEchhhheeccCcHHHHHHHHHHH--------------HHhcCCCC--C------cHHHHHHHHHhhhheeeecCChH
Confidence 99999999999999999999999999 55533211 0 12357899999999999996433
Q ss_pred H-HHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccccccc
Q psy9135 261 S-AEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCW 339 (1107)
Q Consensus 261 ~-~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1107)
+ .+..... .........|+||||+.+.+
T Consensus 220 ~~~~~~~~~-~~~~~~~~~~~lpdg~~~~~-------------------------------------------------- 248 (373)
T smart00268 220 KEMKKARES-SESSKLEKTYELPDGNTIKV-------------------------------------------------- 248 (373)
T ss_pred HHHHHhhhc-ccccccceeEECCCCCEEEE--------------------------------------------------
Confidence 2 2211110 01114456788888877543
Q ss_pred ccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccccccC
Q psy9135 340 VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSVLG 419 (1107)
Q Consensus 340 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 419 (1107)
T Consensus 249 -------------------------------------------------------------------------------- 248 (373)
T smart00268 249 -------------------------------------------------------------------------------- 248 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHH
Q psy9135 420 TDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLL 496 (1107)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~ 496 (1107)
+.||+.+||+||+| +.+..||+++|.++|++||+|+|++|++||+||||+|++|||.+||+
T Consensus 249 ----------------~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~ 312 (373)
T smart00268 249 ----------------GNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLE 312 (373)
T ss_pred ----------------ChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHH
Confidence 56889999999998 45778999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 497 QELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 497 ~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
+||+.+.|.. .++++...+ ++.+++|+||||+|++++|+++||||+||+|+|+
T Consensus 313 ~el~~~~p~~--------~~v~v~~~~-~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~ 365 (373)
T smart00268 313 KELKQLAPKK--------LKVKVIAPP-ERKYSVWLGGSILASLSTFEDMWITKKEYEEHGS 365 (373)
T ss_pred HHHHHhCCCC--------ceeEEecCC-CCccceEeCcccccCccchhhhEEEHHHHhhhCc
Confidence 9999999852 478888766 8999999999999999999999999999999997
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-57 Score=529.38 Aligned_cols=338 Identities=22% Similarity=0.318 Sum_probs=281.0
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCC---------ccceeecC-----------------CHHhhHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK---------LRNLYEYK-----------------DADDLYGL 789 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~---------~~~~~~~~-----------------~~~~~~d~ 789 (1107)
.++||||+||++||+||||++.|+.++||++|+++... .++.+.|+ |.+.|||.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 45899999999999999999999999999999875521 11233333 56788999
Q ss_pred HHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhccc----------CCceEE
Q psy9135 790 LIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL----------GVNTGL 859 (1107)
Q Consensus 790 le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~----------g~~tgl 859 (1107)
++.+|+|+|++.|+++|+++|++++||+++++..|++++|+|||+|++|+++++++++||+||+ |++||+
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhcee
Q psy9135 860 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 939 (1107)
Q Consensus 860 VVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~ 939 (1107)
|||+|++.|+|+||+||+++.++++++++| |+++|++|+++|++++ +.++.. ...+++++|||++||
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~G-G~~lt~~L~~lL~~~~--------~~~~~~----~~~~~~~~iKe~~c~ 230 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLA-GRDITNFIQQMLRERG--------EPIPAE----DILLLAQRIKEKYCY 230 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCc-HHHHHHHHHHHHHHcC--------CCCCcH----HHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 9999999999998876 222211 124589999999999
Q ss_pred eccchHHHHHHhcCCCCCCCCceEEeCCC---CC--EEEecccccccccccccCCCC----CCCcHHHHHHHHHHcCCcc
Q psy9135 940 VTTMERSAEIAAKNPDHKYPSGFMYPLKN---GK--KIPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLSVASS 1010 (1107)
Q Consensus 940 v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd---g~--~i~l~~~erf~~~E~LF~P~~----~~~gL~~~I~~sI~~~~~~ 1010 (1107)
|+.+... +....... +......|.+|| |+ .+.+ +.|||.+||+||+|+. ...||+++|.++|++|| +
T Consensus 231 v~~d~~~-e~~~~~~~-~~~~~~~~~~~d~~~g~~~~i~l-~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~-~ 306 (414)
T PTZ00280 231 VAPDIAK-EFEKYDSD-PKNHFKKYTAVNSVTKKPYTVDV-GYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCP-I 306 (414)
T ss_pred ccCcHHH-HHHHhhcC-cccccceEECCCCCCCCccEEEe-chHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCC-h
Confidence 9987532 33221111 112345789887 33 7888 8999999999999963 24699999999999999 9
Q ss_pred cccccC-------------CCCCCCCCccchHHHHHhhhhCCCccccc--------ccceeeEEEEeCCCCcceehhhhH
Q psy9135 1011 DGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCY--------KLFIKNFKFHEFPAKENYVAWLGG 1069 (1107)
Q Consensus 1011 d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~--------~~~~~~~~v~~~~~~~~~~aW~Gg 1069 (1107)
|+|++| ||| .+||++||+++++ .+.+.. .-....++|+ .++++++++|+||
T Consensus 307 d~r~~L~~nIvL~GG~s~~~Gf------~eRL~~El~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~W~Gg 378 (414)
T PTZ00280 307 DCRRPLYKNIVLSGGSTMFKGF------DKRLQRDVRKRVD-RRLKKAEELSGGKLKPIPIDVNVV-SHPRQRYAVWYGG 378 (414)
T ss_pred hhHHHHhhcEEEeCCcccCcCH------HHHHHHHHHHhcc-ccccccccccccccCCCCceEEEe-cCCccceeEEECh
Confidence 999999 888 9999999999976 211000 0001235665 4447899999999
Q ss_pred HHhhcCCCccceeeeHHHHhhcCC-cccee
Q psy9135 1070 AIFAATESYNKRAIQKDVYLNNNV-IPDWC 1098 (1107)
Q Consensus 1070 SIlasl~~f~~~~ITk~eYeE~G~-i~d~~ 1098 (1107)
||+|++++|+++||||+||+|+|+ |.++.
T Consensus 379 Silas~~~f~~~~itk~eY~E~G~~i~~~~ 408 (414)
T PTZ00280 379 SMLASSPEFEKVCHTKAEYDEYGPSICRYN 408 (414)
T ss_pred hhcccCcchhhheEEHHHHhccChHheeec
Confidence 999999999999999999999996 76664
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=523.86 Aligned_cols=343 Identities=27% Similarity=0.431 Sum_probs=278.4
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc-ccee-----------------ecCCHHhhHHHHHHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-RNLY-----------------EYKDADDLYGLLIEFIR 795 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~-~~~~-----------------~~~~~~~~~d~le~i~~ 795 (1107)
++.++||||+||++||+|||||+.|+.++||+++++..... ...+ ..++.+.+|+.++.+|+
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~~e~i~~ 81 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSPRSNLELRSPIENGVIVDWDALEEIWD 81 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHTGTGEEEEESEETTEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccchhheeeeeeccccccccccccccccc
Confidence 45689999999999999999999999999999998876531 0111 13466778999999999
Q ss_pred HHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEc
Q psy9135 796 KIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYE 875 (1107)
Q Consensus 796 ~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~d 875 (1107)
|+|.+.|+++++++||++++|+++++..|++++|+|||+|++|+++++++++||+|++|++||||||+|++.|+|+||+|
T Consensus 82 ~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~d 161 (393)
T PF00022_consen 82 YIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVD 161 (393)
T ss_dssp HHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEET
T ss_pred cccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeee
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchh------h-hhcccHHHHHHHHHhceeeccchHHHH
Q psy9135 876 GVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVE------D-VENLSDSIIEDIKVCSCFVTTMERSAE 948 (1107)
Q Consensus 876 G~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~------~-~~~l~~~~v~~iKe~~c~v~~~~~~~~ 948 (1107)
|+++.++++++++| |++++++|+++|++++..+.+ .+.+... . .......+++++|+++|||+.+....+
T Consensus 162 G~~~~~~~~~~~~G-G~~lt~~l~~lL~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~ 238 (393)
T PF00022_consen 162 GYVLPHSIKRSPIG-GDDLTEYLKELLKERNIQINP--SYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQ 238 (393)
T ss_dssp TEE-GGGBEEES-S-HHHHHHHHHHHHHHT-SS--G--CCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHhhcccccc--ccccccccccccccccchhhhccchhccchhhhccccccccc
Confidence 99999999999999 999999999999997532211 1221111 0 011235799999999999998876422
Q ss_pred HHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCC---CC-------CcHHHHHHHHHHcCCcccccccC--
Q psy9135 949 IAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL---DM-------LNIATIILDSLLSVASSDGREET-- 1016 (1107)
Q Consensus 949 ~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~---~~-------~gL~~~I~~sI~~~~~~d~r~~L-- 1016 (1107)
...... .....|+||||+.+.+ +.+||.+||+||+|+. +. .||+++|.++|++|| +|+|+.|
T Consensus 239 ~~~~~~----~~~~~~~lPdg~~i~~-~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~-~d~r~~l~~ 312 (393)
T PF00022_consen 239 EEQASE----NPEKSYELPDGQTIIL-GKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCP-IDLRKELLS 312 (393)
T ss_dssp HHHHCS----TTTEEEE-TTSSEEEE-STHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTST-TTTHHHHHT
T ss_pred cccccc----ccceeccccccccccc-ccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccccccc
Confidence 222111 5668899999999999 8999999999999963 23 399999999999999 9999988
Q ss_pred -----------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeH
Q psy9135 1017 -----------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQK 1085 (1107)
Q Consensus 1017 -----------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk 1085 (1107)
||| .+||++||+.+.|. . ..++|...+.+|.+++|+||||+|++++|+++||||
T Consensus 313 nIvl~GG~S~i~G~------~eRL~~eL~~~~~~-~--------~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr 377 (393)
T PF00022_consen 313 NIVLTGGSSLIPGF------KERLQQELRSLLPS-S--------TKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITR 377 (393)
T ss_dssp TEEEESGGGGSTTH------HHHHHHHHHHHSGT-T--------STEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEH
T ss_pred ceEEecccccccch------HHHHHHHhhhhhhc-c--------ccceeccCchhhhhcccccceeeeccccccceeeeH
Confidence 888 99999999999872 1 257776433389999999999999999999999999
Q ss_pred HHHhhcCC-ccceecc
Q psy9135 1086 DVYLNNNV-IPDWCNL 1100 (1107)
Q Consensus 1086 ~eYeE~G~-i~d~~~~ 1100 (1107)
+||+|+|+ +.+++|.
T Consensus 378 ~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 378 EEYEEYGPSIIHRKCF 393 (393)
T ss_dssp HHHHHHGGGGHHHHT-
T ss_pred HHHhCcCcceeeecCC
Confidence 99999996 7777763
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=512.17 Aligned_cols=338 Identities=26% Similarity=0.405 Sum_probs=288.2
Q ss_pred eEEEecCCceeEEeeecCcccccccccceeccCCcc------ccceeccC------------------chhhHHHHHHHH
Q psy9135 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEYK------------------DADDLYGLLIEF 99 (1107)
Q Consensus 44 ~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~------~~~~~~~~------------------~~~~~~~~le~i 99 (1107)
+||||+||+++|+||+|++.|+.++||++++++... ....+.|+ +.+.+|+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 589999999999999999999999999999876442 12222222 345679999999
Q ss_pred HHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEe
Q psy9135 100 IRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPV 179 (1107)
Q Consensus 100 ~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV 179 (1107)
|+|+|.+.+..+++++|+++++|.++++..|++++|+|||++++|++++++++++++|++|.++|||||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeeccch
Q psy9135 180 YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTME 259 (1107)
Q Consensus 180 ~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~~~ 259 (1107)
+||+++.++++++++||++++++|.++ |++.+..+. ...+...++++||++||++...
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~--------------l~~~~~~~~--------~~~~~~~~~~iKe~~~~v~~~~ 218 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKEL--------------LRERGYELN--------SSDEREIVRDIKEKLCYVALDI 218 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHH--------------HHhcCCCcc--------chhHHHHHHHHHHhheeecCCH
Confidence 999999999999999999999999999 655542110 2246789999999999999654
Q ss_pred hHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccccccc
Q psy9135 260 RSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFPFRCW 339 (1107)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1107)
......... ........|.|||++.+.+
T Consensus 219 ~~~~~~~~~--~~~~~~~~~~lpd~~~i~~-------------------------------------------------- 246 (371)
T cd00012 219 EEEQDKSAK--ETSLLEKTYELPDGRTIKV-------------------------------------------------- 246 (371)
T ss_pred HHHHHhhhc--cCCccceeEECCCCeEEEE--------------------------------------------------
Confidence 332111111 1114567788888887654
Q ss_pred ccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccccccC
Q psy9135 340 VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSVLG 419 (1107)
Q Consensus 340 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 419 (1107)
T Consensus 247 -------------------------------------------------------------------------------- 246 (371)
T cd00012 247 -------------------------------------------------------------------------------- 246 (371)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccccCCcccccccccccCCC---CCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHH
Q psy9135 420 TDLKKSVNPYLHFPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLL 496 (1107)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~---~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~ 496 (1107)
+.|||.+||+||+|. ....+|+++|.++|++||.|.|+.+++||+||||+|++|||.+||+
T Consensus 247 ----------------~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~ 310 (371)
T cd00012 247 ----------------GNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQ 310 (371)
T ss_pred ----------------ChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHH
Confidence 457888888888883 4678999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 497 QELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 497 ~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
+||+.+.|... ...+++...+ +|.+++|+|||++|++++|+++||||+||+|+|+
T Consensus 311 ~el~~~~~~~~------~~~~~~~~~~-~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~ 365 (371)
T cd00012 311 KELLKLAPPSK------DTKVKVIAPP-ERKYSVWLGGSILASLSTFQQLWITKEEYEEHGP 365 (371)
T ss_pred HHHHHhCCccc------ceEEEEccCC-CccccEEeCchhhcCchhhhheEeeHHHHhhhCc
Confidence 99999998521 2357777655 8999999999999999999999999999999998
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=509.56 Aligned_cols=379 Identities=25% Similarity=0.359 Sum_probs=299.5
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccC-------Cccccceecc-------------------CchhhHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPH-------TNKLRNLYEY-------------------KDADDLYGL 95 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~-------~~~~~~~~~~-------------------~~~~~~~~~ 95 (1107)
.++|||||||+++|+||||++.|++++|+++++.+ .....+.+++ ++.+.+|++
T Consensus 6 ~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~ 85 (444)
T COG5277 6 VPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDA 85 (444)
T ss_pred CCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHH
Confidence 44599999999999999999999999999999985 1111122222 245567999
Q ss_pred HHHHHHHHHhh--ccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCc--eEEEEEeCC
Q psy9135 96 LIEFIRKIFFK--YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN--TGLVLDIGY 171 (1107)
Q Consensus 96 le~i~~~~~~~--~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~--tglVVDiG~ 171 (1107)
++++|+|+|++ .+..++.+||+++|||++++..+|++++|++||+|+||++++..+++|++|+.|++ +|||||+|+
T Consensus 86 ~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~ 165 (444)
T COG5277 86 MEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGD 165 (444)
T ss_pred HHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCC
Confidence 99999999998 68888999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCC-CCccccccccCCCHHHHHHHHH
Q psy9135 172 SEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPD-PYIVTVEDVENLSDSIIEDIKV 250 (1107)
Q Consensus 172 ~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~~~~~~~~e~iKe 250 (1107)
+.|+|+||+||.++.++++|+++||++++++|.++ |....... .|....+.. ..+.++++.+|+
T Consensus 166 ~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~l--------------L~~~~~~~~~~~l~~e~~-~~~~ei~~~ik~ 230 (444)
T COG5277 166 SVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKL--------------LREKYPPSRGYNLKSELV-EYSSEIVNEIKE 230 (444)
T ss_pred CceeeEeeeccccccccceeeecCcHHHHHHHHHH--------------HhhcccccCCcccccccc-cccHHHHHHHHH
Confidence 99999999999999999999999999999999999 54432100 011111110 246899999999
Q ss_pred hce-------eeccc-hhHHHHHhc------------CCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhh--hh
Q psy9135 251 CSC-------FVTTM-ERSAEIAAK------------NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL--DM 308 (1107)
Q Consensus 251 ~~c-------~v~~~-~~~~~~~~~------------~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~--~~ 308 (1107)
++| |+... ....+.... ...........+.+||++.+.+...+|+.++|.+|+|.+ ..
T Consensus 231 e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~ 310 (444)
T COG5277 231 EVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISG 310 (444)
T ss_pred hhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCcccccc
Confidence 999 77742 222111111 011123456788999999999854449999999999884 10
Q ss_pred hhHHHHHHhhhhhcccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhccccccc
Q psy9135 309 LNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFA 388 (1107)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 388 (1107)
+.. ++. .+
T Consensus 311 l~~-------------------~~~-------------------------------------~~---------------- 318 (444)
T COG5277 311 LEE-------------------AGK-------------------------------------ID---------------- 318 (444)
T ss_pred ccc-------------------ccc-------------------------------------ch----------------
Confidence 000 000 00
Q ss_pred ccccchhhccccccccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHh
Q psy9135 389 ATESYNKRAIQKDVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLL 465 (1107)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~ 465 (1107)
...++. .++.. .+.| +.+..||++++.++|.
T Consensus 319 ---~~~~~~--------------------------------------~~~~~-----~~~~~~~~~~~~gl~e~v~~si~ 352 (444)
T COG5277 319 ---ESKQEL--------------------------------------VAENY-----EISPTNLGNDIAGLPELVYQSIQ 352 (444)
T ss_pred ---hhhhhh--------------------------------------hhhcc-----ccccccccccccchHHHHHHHHH
Confidence 000000 00111 2222 4678999999999999
Q ss_pred ccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCccccc
Q psy9135 466 KTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNK 545 (1107)
Q Consensus 466 ~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~ 545 (1107)
+||.+.|+.|++||+||||+|++|||.+||++||+.+.|. .+.++|..++ +|.+.+|+||||||++++|++
T Consensus 353 ~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~--------~~~v~v~~~~-~~~~~~W~GaSila~~~~~~~ 423 (444)
T COG5277 353 ICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPS--------IWKVSVIPPP-DPSLDAWLGASILASLETFQQ 423 (444)
T ss_pred hccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCC--------CCceeeecCC-chhhccccchhhhccccchhh
Confidence 9999999999999999999999999999999999999997 3689999887 999999999999999999999
Q ss_pred ccccHHHHHhcCCCCcc
Q psy9135 546 RAIQKDAYLNNNMTYME 562 (1107)
Q Consensus 546 ~~ITk~eYeE~G~~~~~ 562 (1107)
+||||+||+|+|+...|
T Consensus 424 ~~itk~eY~e~G~~~~~ 440 (444)
T COG5277 424 LWITKEEYEEHGPDILQ 440 (444)
T ss_pred eEeeHHHhhhhhhHHHh
Confidence 99999999999995443
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=498.13 Aligned_cols=333 Identities=23% Similarity=0.358 Sum_probs=285.7
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc-----cceeec-----------------CCHHhhHHHHHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-----RNLYEY-----------------KDADDLYGLLIEFI 794 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~-----~~~~~~-----------------~~~~~~~d~le~i~ 794 (1107)
++||||+||++||+||+|++.|+.++||+++++++... +.++.| +|.+.||+.++.+|
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i~ 81 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKIW 81 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHHH
Confidence 58999999999999999999999999999998755321 122322 25668899999999
Q ss_pred HHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEE
Q psy9135 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVY 874 (1107)
Q Consensus 795 ~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~ 874 (1107)
+|+|.+.|+++++++|+++++|.++++..|++++|++||.|++|++++++++++++|++|.+||+|||+|++.|+|+||+
T Consensus 82 ~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~ 161 (373)
T smart00268 82 DYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVV 161 (373)
T ss_pred HHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEE
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhcCC
Q psy9135 875 EGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNP 954 (1107)
Q Consensus 875 dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~~~ 954 (1107)
||+++.++++++++| |++++++|+++|++++. .+.. ....++++++||++|||+.+...........
T Consensus 162 ~G~~~~~~~~~~~~G-G~~l~~~l~~~l~~~~~--------~~~~----~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~ 228 (373)
T smart00268 162 DGYVLPHAIKRIDIA-GRDLTDYLKELLSERGY--------QFNS----SAEFEIVREIKEKLCYVAEDFEKEMKKARES 228 (373)
T ss_pred CCEEchhhheeccCc-HHHHHHHHHHHHHhcCC--------CCCc----HHHHHHHHHhhhheeeecCChHHHHHHhhhc
Confidence 999999999999999 99999999999988541 1111 1234689999999999997764332211110
Q ss_pred CCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-------------CC
Q psy9135 955 DHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET-------------QY 1018 (1107)
Q Consensus 955 ~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L-------------~G 1018 (1107)
.........|+||||+.+.+ +.+||.+||+||+|+ .+..+|+++|.++|.+|| .|+|+.| ||
T Consensus 229 ~~~~~~~~~~~lpdg~~~~~-~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~-~d~r~~l~~nIvltGG~s~i~G 306 (373)
T smart00268 229 SESSKLEKTYELPDGNTIKV-GNERFRIPEILFKPELIGLEQKGIHELVYESIQKCD-IDVRKDLYENIVLSGGSTLIPG 306 (373)
T ss_pred ccccccceeEECCCCCEEEE-ChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCC-HhHHHHHHhCeEeecccccCcC
Confidence 01114457899999999999 899999999999995 467899999999999999 9999998 77
Q ss_pred CCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccce
Q psy9135 1019 FPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPDW 1097 (1107)
Q Consensus 1019 f~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~ 1097 (1107)
| .+||++||+.+.| .. .++++. .++++.+++|+||||+|++++|+++||||+||+|+|+ |+++
T Consensus 307 l------~~RL~~el~~~~p-~~--------~~v~v~-~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~ 370 (373)
T smart00268 307 F------GERLEKELKQLAP-KK--------LKVKVI-APPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVER 370 (373)
T ss_pred H------HHHHHHHHHHhCC-CC--------ceeEEe-cCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEe
Confidence 7 9999999999998 21 235664 4558899999999999999999999999999999996 9998
Q ss_pred ecc
Q psy9135 1098 CNL 1100 (1107)
Q Consensus 1098 ~~~ 1100 (1107)
+|+
T Consensus 371 k~~ 373 (373)
T smart00268 371 KCF 373 (373)
T ss_pred ecC
Confidence 874
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=470.66 Aligned_cols=480 Identities=20% Similarity=0.248 Sum_probs=315.8
Q ss_pred CCeEEEecCCceeEEeeecCcccccccccceeccCCccccc--eecc------------------CchhhHHHHHHHHHH
Q psy9135 42 PKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRN--LYEY------------------KDADDLYGLLIEFIR 101 (1107)
Q Consensus 42 ~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~--~~~~------------------~~~~~~~~~le~i~~ 101 (1107)
..||||||||+.|||||+|+..|+++|+|++.|+++.+... -++| .+.+.+|+.+|.+++
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E~ilD 102 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELMEQILD 102 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhhhhhhhhccCCCCCcCCccccHHHHHHHHH
Confidence 55999999999999999999999999999999998543310 0111 266789999999999
Q ss_pred HHHhhccccCC--CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhcc-CCC---ceEEEEEeCCCceE
Q psy9135 102 KIFFKYFVTSP--KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCT-LGV---NTGLVLDIGYSEAT 175 (1107)
Q Consensus 102 ~~~~~~L~~~~--~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~-~g~---~tglVVDiG~~~T~ 175 (1107)
|+| .+|++++ .+|||++||+.+||...|+.|+|+|||+||||+|.++.+++.|+|. ++. .+|+||++||+.|+
T Consensus 103 Y~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T~ 181 (645)
T KOG0681|consen 103 YIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSATH 181 (645)
T ss_pred HHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcce
Confidence 999 7799887 6899999999999999999999999999999999999999999994 333 36999999999999
Q ss_pred EEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceee
Q psy9135 176 LLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255 (1107)
Q Consensus 176 V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v 255 (1107)
|+||.||..+...++|+|+||.+...||.+| |..+.+.++ ..++....+.++..|||+
T Consensus 182 vipvldG~~il~~~kRiN~GG~qa~dYL~~L--------------mq~Kyp~~~--------~~~t~sk~E~l~~eHcyi 239 (645)
T KOG0681|consen 182 VIPVLDGRLILKDVKRINWGGYQAGDYLSRL--------------MQLKYPFHL--------NAFTGSKAERLLHEHCYI 239 (645)
T ss_pred eEEEecCchhhhcceeeccCcchHHHHHHHH--------------HhccCccch--------hhcCHHHHHHHhhhhcee
Confidence 9999999999999999999999999999999 444333332 346788999999999999
Q ss_pred ccchhHHHHHhcCCCCCCCCCeeeecCCCcccc-----cCccchhhhhhhhcchhhhhhhHHHHHHhh-----h----hh
Q psy9135 256 TTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIP-----VSGHIRETAFEVLFELDLDMLNIATIILDS-----L----LS 321 (1107)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~-----i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~-----~----~~ 321 (1107)
+.+..+.-.....++........+++|....+. +....|.+ ..+-.+. .+...+++.+. . .+
T Consensus 240 s~DY~eei~~~l~~d~~d~~~~~~qlP~~evl~~~e~~l~Ae~kqe--kRlq~~a--~lkrv~k~~~re~~redeqql~~ 315 (645)
T KOG0681|consen 240 SPDYREEIIKILEMDYYDENRNYFQLPYTEVLAEVELALTAEKKQE--KRLQEQA--ALKRVEKINARENRREDEQQLES 315 (645)
T ss_pred CcchHHHHHHHhhhhhhhccceEEecccccccchhhhhccHHHHHH--HHHHHHH--HHhhHHHHHHHHhhhhhHHHHHH
Confidence 976554332222233333556677777665421 11111110 0000000 00011111110 0 00
Q ss_pred cccCCCccc-----cccccccccccCCCcchhhhcc-------CCcc---cccccchhccccccCCccchhhhhhccccc
Q psy9135 322 VASSDGREE-----TQYFPFRCWVNTRTPEKLCCLV-------GWSN---ICCYKLFIKNFKFHEFPAKENYVAWLGGAI 386 (1107)
Q Consensus 322 ~~~~~~~~~-----~~~~~~~~~~~~~~~e~~~~~~-------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1107)
.....++.+ ++.+++.-.-....++.+...+ +.+. .-..|..++..++.+.++ +|...|+...-
T Consensus 316 ~~kaq~e~e~~~D~~q~~~ll~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~-~~~~swl~e~r 394 (645)
T KOG0681|consen 316 YNKAQGEQESNLDLEQKFPLLNVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEERE-ENLISWLEELR 394 (645)
T ss_pred HHHhhhchhcCccHhhhchhhcchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhccccccc-ccHHHHHHHHH
Confidence 000000000 0000000000000000000000 0000 000001111122222222 44555554221
Q ss_pred c----------ccc------------------------ccchhh-ccccccccCCC--CCCCccc--------c------
Q psy9135 387 F----------AAT------------------------ESYNKR-AIQKDVYLNNN--VIPDWCN--------L------ 415 (1107)
Q Consensus 387 ~----------a~~------------------------~~~~~~-~~~~~~~~~~~--~~p~~~~--------~------ 415 (1107)
. ++. +..+.. ....+...+++ +..||+- .
T Consensus 395 ~k~~~ller~~~kk~lk~e~~~r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl 474 (645)
T KOG0681|consen 395 EKLEKLLERISQKKRLKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDL 474 (645)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHH
Confidence 1 000 000000 01111112221 2233320 0
Q ss_pred ---c----ccCC----------CCCCC----CCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccc
Q psy9135 416 ---S----VLGT----------DLKKS----VNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDM 471 (1107)
Q Consensus 416 ---~----~~~~----------~~~~~----~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~ 471 (1107)
. ++.. ++..+ .+.+...+++|.||+++||++|+| |.+++||.|++..++.+.|.|.
T Consensus 475 ~~l~~~L~e~Dp~F~~~~~~~~d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~e 554 (645)
T KOG0681|consen 475 KSLNHELLEFDPHFTQYVEGTTDPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDE 554 (645)
T ss_pred HHHHHHHHhhCcccccccccccCcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhh
Confidence 0 0111 11111 122334455799999999999999 6899999999999999999999
Q ss_pred hhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHH
Q psy9135 472 KKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKD 551 (1107)
Q Consensus 472 r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~ 551 (1107)
+..|.+||+||||+|++||+.+||.+||..+.|. ++.|.|..+. ||..+||+||+.+|...+|...|+||+
T Consensus 555 q~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~--------gS~i~V~ras-dP~LDAW~GA~~~a~n~~f~~~~~Tr~ 625 (645)
T KOG0681|consen 555 QEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPV--------GSSINVVRAS-DPVLDAWRGASAWAANPTFTLTQITRK 625 (645)
T ss_pred hHhhhhheEeecccccCcCHHHHHHHHhheeccc--------CCceEEEecC-CcchhhhhhhHHhhcCcccchhhhhHH
Confidence 9999999999999999999999999999999997 4689999877 999999999999999999999999999
Q ss_pred HHHhcCC
Q psy9135 552 AYLNNNM 558 (1107)
Q Consensus 552 eYeE~G~ 558 (1107)
||+|+|+
T Consensus 626 dy~E~G~ 632 (645)
T KOG0681|consen 626 DYEEKGE 632 (645)
T ss_pred hhhhhhH
Confidence 9999997
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=477.56 Aligned_cols=336 Identities=24% Similarity=0.336 Sum_probs=281.7
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCCC------ccceeec------------------CCHHhhHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK------LRNLYEY------------------KDADDLYGLLIEF 793 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~------~~~~~~~------------------~~~~~~~d~le~i 793 (1107)
+||||+||+++|+||+|++.|+.++||++++++... .+..+.| +|.+.+|+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 589999999999999999999999999999875431 0112222 3567789999999
Q ss_pred HHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEE
Q psy9135 794 IRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPV 873 (1107)
Q Consensus 794 ~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV 873 (1107)
|+|+|.+.+..+++++|+++++|+++++..|++++++|||++++|++++++++++|+|++|++||+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhcC
Q psy9135 874 YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKN 953 (1107)
Q Consensus 874 ~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~~ 953 (1107)
+||+++.++++++++| |++++++|+++|++++. .+. .......++++||++|||+.+...+......
T Consensus 161 ~~G~~~~~~~~~~~~G-G~~l~~~l~~~l~~~~~--------~~~----~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~ 227 (371)
T cd00012 161 YDGYVLPHAIKRLDLA-GRDLTRYLKELLRERGY--------ELN----SSDEREIVRDIKEKLCYVALDIEEEQDKSAK 227 (371)
T ss_pred ECCEEchhhheecccc-HHHHHHHHHHHHHhcCC--------Ccc----chhHHHHHHHHHHhheeecCCHHHHHHhhhc
Confidence 9999999999999999 99999999999988761 111 1123568999999999999876433211111
Q ss_pred CCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC-------CCCCCCC
Q psy9135 954 PDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET-------QYFPFRC 1023 (1107)
Q Consensus 954 ~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L-------~Gf~~~~ 1023 (1107)
. .......|.||||+.+.+ +.|||.+||+||+|. ....+|+++|.++|++|| .|.|+.+ .|-+...
T Consensus 228 ~--~~~~~~~~~lpd~~~i~~-~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~-~~~~~~l~~~Ivl~GG~s~~~ 303 (371)
T cd00012 228 E--TSLLEKTYELPDGRTIKV-GNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCD-IDLRKDLYSNIVLSGGSTLFP 303 (371)
T ss_pred c--CCccceeEECCCCeEEEE-ChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCC-HhHHHHHHhCEEEeCCccCCc
Confidence 1 114567899999999999 899999999999996 367899999999999999 9999988 2222222
Q ss_pred CccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-cccee
Q psy9135 1024 WVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPDWC 1098 (1107)
Q Consensus 1024 ~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~~ 1098 (1107)
++.+||++||..+.| .. +...+++. ...+|.+++|+|||++|++++|+++||||+||+|+|+ +.+++
T Consensus 304 gl~~rl~~el~~~~~-~~------~~~~~~~~-~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 304 GFGERLQKELLKLAP-PS------KDTKVKVI-APPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred CHHHHHHHHHHHhCC-cc------cceEEEEc-cCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 229999999999998 21 11235554 4568999999999999999999999999999999996 66553
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=465.09 Aligned_cols=334 Identities=24% Similarity=0.360 Sum_probs=278.7
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccC-------CCCccceee-------------------cCCHHhhHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPH-------TNKLRNLYE-------------------YKDADDLYGLL 790 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~-------~~~~~~~~~-------------------~~~~~~~~d~l 790 (1107)
++||||+||+.+|+||||++.|++++|+++++.+ ....++.++ -++.+.+|+++
T Consensus 7 ~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~W~~~ 86 (444)
T COG5277 7 PTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILNWDAM 86 (444)
T ss_pred CeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCCcHHH
Confidence 4499999999999999999999999999999985 111111111 13677889999
Q ss_pred HHHHHHHHHh--ccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCc--eEEEEEcCCC
Q psy9135 791 IEFIRKIFFK--YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN--TGLVLDIGYS 866 (1107)
Q Consensus 791 e~i~~~~~~~--~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~--tglVVDiG~~ 866 (1107)
+++|+|+|++ .+...+.++|++++||+++++..|++++|++||+|+||++++..+++|++|+.|+. +|+|||+|++
T Consensus 87 e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD~G~~ 166 (444)
T COG5277 87 EQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDS 166 (444)
T ss_pred HHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEEcCCC
Confidence 9999999998 68899999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhce-------e
Q psy9135 867 EATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSC-------F 939 (1107)
Q Consensus 867 ~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c-------~ 939 (1107)
.|+|+||+||++++++++++++| |++++.+|.++|..... +.+.+.+..+. ..-+.++++.+|+++| |
T Consensus 167 ~t~v~PV~DG~~l~~a~~ri~~g-G~~it~~l~~lL~~~~~---~~~~~~l~~e~-~~~~~ei~~~ik~e~~~~~~~~~y 241 (444)
T COG5277 167 VTHVIPVVDGIVLPKAVKRIDIG-GRDITDYLKKLLREKYP---PSRGYNLKSEL-VEYSSEIVNEIKEEVCETDDESAY 241 (444)
T ss_pred ceeeEeeeccccccccceeeecC-cHHHHHHHHHHHhhccc---ccCCccccccc-ccccHHHHHHHHHhhccccccccc
Confidence 99999999999999999999999 99999999999998541 11223333221 0123569999999999 8
Q ss_pred eccchHHHHHHhcC-----C--------CCCCCCceEEeCCCCCEEEecccc-cccccccccCCC--C---CCCc-----
Q psy9135 940 VTTMERSAEIAAKN-----P--------DHKYPSGFMYPLKNGKKIPVSGHI-RETAFEVLFELD--L---DMLN----- 995 (1107)
Q Consensus 940 v~~~~~~~~~~~~~-----~--------~~~~~~~~~y~Lpdg~~i~l~~~e-rf~~~E~LF~P~--~---~~~g----- 995 (1107)
+..+.++......+ . .........+.+|||+.+.+ +.| ||++||.||+|. . +..+
T Consensus 242 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~-~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~ 320 (444)
T COG5277 242 VSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEF-GNEERFKAPEILFKPELPISGLEEAGKIDES 320 (444)
T ss_pred hhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEee-chhhhhhcchhhcCCccccccccccccchhh
Confidence 87543322111100 0 00124456789999999999 788 999999999997 2 3334
Q ss_pred ----------------------HHHHHHHHHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCC
Q psy9135 996 ----------------------IATIILDSLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWS 1040 (1107)
Q Consensus 996 ----------------------L~~~I~~sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~ 1040 (1107)
|++++.++|..|| .|.|+.| ||| .+||++||+.+.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~-~~~r~~l~~nivitGGts~~pg~------~~Rl~~el~~~~p~- 392 (444)
T COG5277 321 KQELVAENYEISPTNLGNDIAGLPELVYQSIQICD-EDVRKSLYSNIVLTGGTSKIPGF------AERLQKELTSLAPS- 392 (444)
T ss_pred hhhhhhhccccccccccccccchHHHHHHHHHhcc-HHHHHHHhhCEEEecCccCCCCH------HHHHHHHHHhhcCC-
Confidence 9999999999999 9999999 888 99999999999992
Q ss_pred cccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC
Q psy9135 1041 NICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV 1093 (1107)
Q Consensus 1041 ~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~ 1093 (1107)
...+.|. ++.+|.+.+|+||||||++++|+++||||+||+|+|+
T Consensus 393 --------~~~v~v~-~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~ 436 (444)
T COG5277 393 --------IWKVSVI-PPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGP 436 (444)
T ss_pred --------CCceeee-cCCchhhccccchhhhccccchhheEeeHHHhhhhhh
Confidence 2456775 4559999999999999999999999999999999997
|
|
| >PF06105 Aph-1: Aph-1 protein; InterPro: IPR009294 This family consists of several eukaryotic Aph-1 proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=423.57 Aligned_cols=190 Identities=44% Similarity=0.802 Sum_probs=173.1
Q ss_pred CccccccccccccceeeeeeeeecCCCeEEehhhHhHHHHHHHHHHhhhheeeeeccc-chhHHHHHHHHHHHHHHHHHH
Q psy9135 560 YMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQC-NIIFGVVISVLCQEAFRYILY 638 (1107)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~e~~r~~~~ 638 (1107)
..-++||+++||||.+++|+.+|++||+|||++++++|+||+||+++|++|+++.|-. .+++++++||++||++|+.||
T Consensus 2 ~~~f~Gc~liafgP~lalf~~tIa~~p~liIi~i~~aFfWLvSLLlss~iW~i~~pl~~~l~f~v~~sV~~QE~fR~~~~ 81 (238)
T PF06105_consen 2 LAVFFGCALIAFGPALALFVFTIARDPQLIIILIAGAFFWLVSLLLSSLIWFIVVPLRDNLAFGVLFSVLIQEAFRYLYY 81 (238)
T ss_pred hHHHHHHHHHHHCHHHHhhheeeeCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 3458999999999999999999999999999999999999999999999999999944 899999999999999999999
Q ss_pred HHHHHhhcchhhhcccc-ccccchhhhhhhccchhHHHHHHHHhhhcccccCCCccccccCcce-eeehhhHHHHHHHHH
Q psy9135 639 LILQKSRGGLQYVSDRN-TMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQY-FGFTTSIFTCCFSLL 716 (1107)
Q Consensus 639 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~g~g~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 716 (1107)
|++||+|++|++++++. ...++|.+|||+|+|||+||++|+++|+|+|++||||+|.++|+++ ||++||++|+||+++
T Consensus 82 ~ll~kae~gL~~i~~~~~~~~~~~~lA~v~GlGfGimsg~f~~~n~Lads~GPGt~g~~~c~~~~ffl~SA~~tl~~~lL 161 (238)
T PF06105_consen 82 KLLKKAEEGLQSIAEDGTSPISRHQLAYVSGLGFGIMSGVFSFVNILADSLGPGTVGIHGCPSMPFFLTSAFMTLAFILL 161 (238)
T ss_pred HHHHHHHHHHHHhccccCCCCccceeeehhccchHHHHHHHHHHhhhhhccCCceeccCCCCCccchHHHHHHHHHHHHH
Confidence 99999999999999984 4479999999999999999999999999999999999999999888 999999999999999
Q ss_pred HHhheeeEEeccccccccccceEEEecCcceEEEec
Q psy9135 717 HVFWSIVFFRGVEIKNRTLKTGVVLDIGSKYTKYGI 752 (1107)
Q Consensus 717 ~~~~~~~~f~g~~~~~~~~~~~vViD~Gs~~iK~G~ 752 (1107)
||||||||||||++++. ..++.=..+|..-.+.
T Consensus 162 H~fW~VI~F~g~~~~~~---~~i~~V~~~Hl~vs~l 194 (238)
T PF06105_consen 162 HTFWMVIFFDGCEKKNW---WLIAFVVISHLLVSCL 194 (238)
T ss_pred HHHHHHhhhhhhccCCc---eEEEehHHHHHHHHHH
Confidence 99999999999998664 2333335555443333
|
Gamma-secretase catalyses the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signalling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity [].; GO: 0016485 protein processing, 0043085 positive regulation of catalytic activity, 0016021 integral to membrane |
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=407.10 Aligned_cols=326 Identities=23% Similarity=0.321 Sum_probs=272.6
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeec-------------------CCHHhhHHHHHHHHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEY-------------------KDADDLYGLLIEFIRK 796 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~-------------------~~~~~~~d~le~i~~~ 796 (1107)
.++||+|+|++++|+|+++++.|+ ++|+++.+.+.++. +.|.+ +|...+|+.-..+|++
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~r-r~f~~nei~ec~D~ssL~y~rp~erGyLvnW~tq~~vWDy 80 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGRR-RSFLANEIDECKDISSLFYRRPHERGYLVNWDTQSQVWDY 80 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCce-eccchhhhcccccc-hhhhhhhhhhccCccceEEeehhhcceeEeehhHHHHHHH
Confidence 468999999999999999999999 67999988876642 12221 2566789999999999
Q ss_pred HHHhc-cccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhccc----C-------CceEEEEEcC
Q psy9135 797 IFFKY-FVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL----G-------VNTGLVLDIG 864 (1107)
Q Consensus 797 ~~~~~-L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~----g-------~~tglVVDiG 864 (1107)
+|.+. ++++.+++.++++||.++-+...+.+.|+|||.|+|.+++-.+.+.++.+-. + ..+++|||+|
T Consensus 81 ~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsG 160 (400)
T KOG0680|consen 81 CFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSG 160 (400)
T ss_pred HhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCC
Confidence 99653 4577799999999999999999999999999999999999999999988761 1 2279999999
Q ss_pred CCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccch
Q psy9135 865 YSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTME 944 (1107)
Q Consensus 865 ~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~ 944 (1107)
++.|+|+||++|.+..++++|+++| |+.||++|++.+..++. ... + ..+++++|||.+|||+.+.
T Consensus 161 ysfThIip~v~g~~~~qaV~RiDvG-GK~LTn~LKE~iSyR~l--------Nvm--d----ET~vVNeiKEdvcfVSqnF 225 (400)
T KOG0680|consen 161 YSFTHIIPVVKGIPYYQAVKRIDVG-GKALTNLLKETISYRHL--------NVM--D----ETYVVNEIKEDVCFVSQNF 225 (400)
T ss_pred CceEEEehhhcCcchhhceEEeecc-hHHHHHHHHHHhhhhhh--------ccc--c----hhhhhhhhhhheEEechhh
Confidence 9999999999999999999999999 99999999999998872 221 1 1259999999999999865
Q ss_pred HHHHHHhcCCCCCCCCceEEeCCC-------------------CCEEEecccccccccccccCCC---CCCCcHHHHHHH
Q psy9135 945 RSAEIAAKNPDHKYPSGFMYPLKN-------------------GKKIPVSGHIRETAFEVLFELD---LDMLNIATIILD 1002 (1107)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~y~Lpd-------------------g~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~ 1002 (1107)
.+.-...............|.||| .+.|.+ +.|||..||+||+|+ ++++||+++|.+
T Consensus 226 ~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L-~nErF~IPEilF~Psdi~I~q~GIpEAV~e 304 (400)
T KOG0680|consen 226 KEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITL-TNERFTIPEILFSPSDIGIQQPGIPEAVLE 304 (400)
T ss_pred HHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeee-cccccccchhhcChhhcCcccCCchHHHHH
Confidence 432221111111113456777774 455788 899999999999996 578999999999
Q ss_pred HHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhH
Q psy9135 1003 SLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGG 1069 (1107)
Q Consensus 1003 sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~Gg 1069 (1107)
||..|| ..+|+.| ||| .+||..||++++|. + ..++|. .|.+|..-+|-||
T Consensus 305 sl~~~P-e~~~p~l~~NIv~iGGn~~fPgF------~~RL~~Elr~l~P~-d--------~~v~V~-~p~dp~~~~W~~g 367 (400)
T KOG0680|consen 305 SLSMLP-EEVRPLLLENIVCIGGNSNFPGF------RQRLARELRSLLPA-D--------WEVSVS-VPEDPITFAWEGG 367 (400)
T ss_pred HHHhCH-HHHHHHHHhcEEEecCccCCcch------HHHHHHHHHhhCCc-c--------ceEEEe-cCCCcceeeehhc
Confidence 999999 9999988 999 99999999999992 2 356664 5579999999999
Q ss_pred HHhhcCCCccceeeeHHHHhhcCCcccee
Q psy9135 1070 AIFAATESYNKRAIQKDVYLNNNVIPDWC 1098 (1107)
Q Consensus 1070 SIlasl~~f~~~~ITk~eYeE~G~i~d~~ 1098 (1107)
+-++.+++|..+||||+||+|+|+ +||
T Consensus 368 ~~~~~~~~~~~~~itR~dy~E~G~--~~~ 394 (400)
T KOG0680|consen 368 SEFAKTDSFEKAVITREDYEEHGP--SWC 394 (400)
T ss_pred cccccCcchhcceecHhhHhhcCc--hhh
Confidence 999999999999999999999998 665
|
|
| >KOG3972|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=364.46 Aligned_cols=172 Identities=48% Similarity=0.879 Sum_probs=164.3
Q ss_pred CccccccccccccceeeeeeeeecCCCeEEehhhHhHHHHHHHHHHhhhheeee-eccc-chhHHHHHHHHHHHHHHHHH
Q psy9135 560 YMEFLGCTMTAFGPVIAMFLTTIMQDPVKVIILVASAFAWLLSLLLSSIVWFVI-RYQC-NIIFGVVISVLCQEAFRYIL 637 (1107)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~v~~~e~~r~~~ 637 (1107)
+-.++||+++||||.+++|..+||.+|.|+|++++++|+||+||+++|++|++- .+.. .++|+..+||++||.+|+.|
T Consensus 3 ~~~ffgC~fiaFgPa~ALf~~tIA~dPvRIIiliagaFFWLvSLLisSl~W~~l~i~l~~~lifg~~vsV~~qE~fR~ay 82 (252)
T KOG3972|consen 3 AAVFFGCTFIAFGPAFALFVFTIAHDPVRIIILIAGAFFWLVSLLISSLVWFGLSIVLPDDLIFGATVSVIAQELFRFAY 82 (252)
T ss_pred cceeeeeEEeeeCcchhhheeeecCCCeeehhhHHHHHHHHHHHHHHHHHHHheEccchhhhhhHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999999999995 4433 89999999999999999999
Q ss_pred HHHHHHhhcchhhhccc-cccccchhhhhhhccchhHHHHHHHHhhhcccccCCCccccccCcceeeehhhHHHHHHHHH
Q psy9135 638 YLILQKSRGGLQYVSDR-NTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTTSIFTCCFSLL 716 (1107)
Q Consensus 638 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~g~g~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1107)
|+++|||++||++++++ ...+++|.+|||+|||||+|+++|..+|+|+|+.||||+|+++++++|||++|++++.+.|+
T Consensus 83 yklLkka~~GL~si~~d~~~~~s~h~lAyVsGLgfGIiSgvFs~vN~lad~sGPGtvGl~g~s~~~fl~sa~~al~iiLl 162 (252)
T KOG3972|consen 83 YKLLKKAQEGLNSITEDGRLHNSRHMLAYVSGLGFGIISGVFSTVNALADFSGPGTVGLHGDSPYFFLTSAFSALLIILL 162 (252)
T ss_pred HHHHHHHHHHHHhcCccCCCchhHHHHHHHhccchhHHHHHHHHHHHHHhccCCCeeccCCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999995 67788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhheeeEEeccccc
Q psy9135 717 HVFWSIVFFRGVEIK 731 (1107)
Q Consensus 717 ~~~~~~~~f~g~~~~ 731 (1107)
||||.|+|||+||+.
T Consensus 163 HvfW~ivffdac~k~ 177 (252)
T KOG3972|consen 163 HVFWGIVFFDACEKI 177 (252)
T ss_pred HHHHHheeehhhhhh
Confidence 999999999999964
|
|
| >KOG0678|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=368.69 Aligned_cols=349 Identities=20% Similarity=0.319 Sum_probs=270.5
Q ss_pred eEEEecCCceeEEeeecCcccccccccceeccCCccc--------------cceeccC----------------chhhHH
Q psy9135 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL--------------RNLYEYK----------------DADDLY 93 (1107)
Q Consensus 44 ~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~--------------~~~~~~~----------------~~~~~~ 93 (1107)
++|+|+|+...|.||+|...|++++|++++....... -+++.++ +..++|
T Consensus 6 p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~~~~ysl~ypiRhg~ve~w 85 (415)
T KOG0678|consen 6 PCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALDATTYSLKYPIRHGQVEDW 85 (415)
T ss_pred ceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHhhcccccccceeccccccH
Confidence 3899999999999999999999999999875422111 2344444 334679
Q ss_pred HHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccC--------CCceEE
Q psy9135 94 GLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL--------GVNTGL 165 (1107)
Q Consensus 94 ~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~--------g~~tgl 165 (1107)
+.|+++|...+.++|..+|++|-.|||||+++++++|+..+|++||.|+||.++++.++++|+-++ -.-||+
T Consensus 86 d~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~ 165 (415)
T KOG0678|consen 86 DLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGI 165 (415)
T ss_pred HHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeE
Confidence 999999999999999999999999999999999999999999999999999999999999988653 236999
Q ss_pred EEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHH
Q psy9135 166 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSII 245 (1107)
Q Consensus 166 VVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
|||.|.+.|||+||.||+|+..+++..++.|+++|-+++++ |++.+...|. ..+.+.+
T Consensus 166 VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~l--------------lRer~~~iP~--------e~sl~ta 223 (415)
T KOG0678|consen 166 VIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQL--------------LREREVGIPP--------EQSLETA 223 (415)
T ss_pred EEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHH--------------hhCCCCCCCh--------HHhhhhh
Confidence 99999999999999999999999999999999999999999 7776644332 1357889
Q ss_pred HHHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccC
Q psy9135 246 EDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASS 325 (1107)
Q Consensus 246 e~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~ 325 (1107)
+.+||++||+.++--.+ ..+.. |+ .++..|--.
T Consensus 224 k~iKe~ycy~cPdivke-f~k~d-------------------------~e----------------p~K~ikq~~----- 256 (415)
T KOG0678|consen 224 KAIKEKYCYTCPDIVKE-FAKYD-------------------------RE----------------PAKWIKQYT----- 256 (415)
T ss_pred HHHHhhhcccCcHHHHH-HHHhc-------------------------cC----------------HHHHHHHHh-----
Confidence 99999999998633211 10000 00 000000000
Q ss_pred CCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccC
Q psy9135 326 DGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLN 405 (1107)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 405 (1107)
.++.
T Consensus 257 -------------~~~~--------------------------------------------------------------- 260 (415)
T KOG0678|consen 257 -------------GINV--------------------------------------------------------------- 260 (415)
T ss_pred -------------ccch---------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCCC----CCCCHHHHHHHHHhccCccchhhhhccEEE
Q psy9135 406 NNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLKTGRDMKKPLAENILL 481 (1107)
Q Consensus 406 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~----~~~gL~e~I~~sI~~~~~d~r~~L~~nIvL 481 (1107)
.+.....+..|.|||..||++|+|.. -...|++++...|+.||+|.|+.||+||++
T Consensus 261 --------------------i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivl 320 (415)
T KOG0678|consen 261 --------------------ITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVL 320 (415)
T ss_pred --------------------hcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhh
Confidence 00000112238899999999999952 246799999999999999999999999999
Q ss_pred EcCCCCccChHHHHHHHHHhhcCCC----Cccccccc--eeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHh
Q psy9135 482 TGGTAMTPGLKYRLLQELRTLIESP----PYKDKLFI--KNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLN 555 (1107)
Q Consensus 482 tGG~S~ipGf~eRL~~EL~~~~~~~----~~~~~~~~--~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE 555 (1107)
.||++++++|..|+++++.++.... .--+.+.. ..++++... -.+++.|.|||+||+.+.|-+.+=||+||+|
T Consensus 321 sggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~-~qr~avwfggs~lastpef~~~~~tk~~yee 399 (415)
T KOG0678|consen 321 SGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHL-LQRTAVWFGGSKLASTPEFVPACHTKEDYEE 399 (415)
T ss_pred ccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhh-hhhcceeccCccccCCcccccccCcchhhhh
Confidence 9999999999999999998754321 00000111 235555444 5789999999999999999999999999999
Q ss_pred cCC
Q psy9135 556 NNM 558 (1107)
Q Consensus 556 ~G~ 558 (1107)
+|+
T Consensus 400 ~g~ 402 (415)
T KOG0678|consen 400 YGP 402 (415)
T ss_pred hCh
Confidence 997
|
|
| >KOG0678|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=366.72 Aligned_cols=336 Identities=21% Similarity=0.274 Sum_probs=266.4
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc--------------cceeecC----------------CHHhh
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL--------------RNLYEYK----------------DADDL 786 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~--------------~~~~~~~----------------~~~~~ 786 (1107)
.++|+|+|+.++|.||+|...|++++|+++.......+ -+.+.|+ +.+++
T Consensus 5 ~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~~~~ysl~ypiRhg~ve~ 84 (415)
T KOG0678|consen 5 LPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALDATTYSLKYPIRHGQVED 84 (415)
T ss_pred CceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHhhcccccccceecccccc
Confidence 35999999999999999999999999999875422111 2334443 45578
Q ss_pred HHHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC--------CceE
Q psy9135 787 YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG--------VNTG 858 (1107)
Q Consensus 787 ~d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g--------~~tg 858 (1107)
||.|+++|+..++++|..+|++|..+++||+.++++.|+.++|++||.|++|++|++.++++||-++- .-||
T Consensus 85 wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG 164 (415)
T KOG0678|consen 85 WDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTG 164 (415)
T ss_pred HHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 99999999999999999999999999999999999999999999999999999999999999987642 3589
Q ss_pred EEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhce
Q psy9135 859 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSC 938 (1107)
Q Consensus 859 lVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c 938 (1107)
+|||.|++.|+|+||.|||++.++++.+|++ |+++|-+++++|++++ ..++.++ +.+..+.+||++|
T Consensus 165 ~VidsGdgvThvipvaEgyVigScik~iPia-grdiT~fiQ~llRer~--------~~iP~e~----sl~tak~iKe~yc 231 (415)
T KOG0678|consen 165 IVIDSGDGVTHVIPVAEGYVIGSCIKHIPIA-GRDITYFIQQLLRERE--------VGIPPEQ----SLETAKAIKEKYC 231 (415)
T ss_pred EEEecCCCeeEEEEeecceEEeeeecccccc-CCchhHHHHHHhhCCC--------CCCChHH----hhhhhHHHHhhhc
Confidence 9999999999999999999999999999999 9999999999998886 3344333 4569999999999
Q ss_pred eeccchHHHHHHhcCCCCCCCCceEE---eCCCC--CEEEecccccccccccccCCCC----CCCcHHHHHHHHHHcCCc
Q psy9135 939 FVTTMERSAEIAAKNPDHKYPSGFMY---PLKNG--KKIPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLSVAS 1009 (1107)
Q Consensus 939 ~v~~~~~~~~~~~~~~~~~~~~~~~y---~Lpdg--~~i~l~~~erf~~~E~LF~P~~----~~~gL~~~I~~sI~~~~~ 1009 (1107)
|+.++. .++.++...... ..-++| .+-.| ..+++ |.|||..||++|+|.. -..+|++++...|++||
T Consensus 232 y~cPdi-vkef~k~d~ep~-K~ikq~~~~~~i~~~~~~vDv-gyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~p- 307 (415)
T KOG0678|consen 232 YTCPDI-VKEFAKYDREPA-KWIKQYTGINVITGKKFVVDV-GYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCP- 307 (415)
T ss_pred ccCcHH-HHHHHHhccCHH-HHHHHHhccchhcCCceeecc-cHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCC-
Confidence 999775 333333221100 000111 11122 34566 8999999999999963 34689999999999999
Q ss_pred ccccccC-------------CCCCCCCCccchHHHHHhhhhCC----CcccccccceeeEEEE-eCCCCcceehhhhHHH
Q psy9135 1010 SDGREET-------------QYFPFRCWVNTRTPEKLCCLVGW----SNICCYKLFIKNFKFH-EFPAKENYVAWLGGAI 1071 (1107)
Q Consensus 1010 ~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~----~~~~~~~~~~~~~~v~-~~~~~~~~~aW~GgSI 1071 (1107)
+|.|+.| .+| ..|++++++.+... ++.. +.++...+.|. ....-.++++|.|||+
T Consensus 308 Idvrr~ly~nivlsggst~fk~f------gr~lqrD~kr~vd~rl~~s~~l-sg~k~~~vdvqvish~~qr~avwfggs~ 380 (415)
T KOG0678|consen 308 IDVRRPLYKNIVLSGGSTMFKDF------GRRLQRDLKRLVDTRLAESEGL-SGIKSKPVDVQVLSHLLQRTAVWFGGSK 380 (415)
T ss_pred cccchhhhhHHhhccchHHHHHh------hhhccHHHHHHHHHHHHHhccc-ccCCCCCceeehhhhhhhhcceeccCcc
Confidence 9999988 778 88999999877541 1110 12233334444 2334678999999999
Q ss_pred hhcCCCccceeeeHHHHhhcCC-ccc
Q psy9135 1072 FAATESYNKRAIQKDVYLNNNV-IPD 1096 (1107)
Q Consensus 1072 lasl~~f~~~~ITk~eYeE~G~-i~d 1096 (1107)
|||.+.|-+.+-||+||+|+|+ |..
T Consensus 381 lastpef~~~~~tk~~yee~g~si~r 406 (415)
T KOG0678|consen 381 LASTPEFVPACHTKEDYEEYGPSICR 406 (415)
T ss_pred ccCCcccccccCcchhhhhhChhhhh
Confidence 9999999999999999999996 543
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=355.68 Aligned_cols=167 Identities=23% Similarity=0.411 Sum_probs=151.6
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc---------------------cceeecCCHHhhHHHHHHHH
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL---------------------RNLYEYKDADDLYGLLIEFI 794 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~---------------------~~~~~~~~~~~~~d~le~i~ 794 (1107)
..|||||+||+.+||||+|+..|+++|++++.++++.+. |..|++ +.+.+|+.+|.++
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~~s~t~vgnd~~~~~~~Rs~~rSPFd~-nVvtNwel~E~il 101 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLGASVTLVGNDILNFQGVRSSPRSPFDR-NVVTNWELMEQIL 101 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccccccccccchhhhhhhhhccCCCCCcC-CccccHHHHHHHH
Confidence 579999999999999999999999999999999986432 333432 5788999999999
Q ss_pred HHHHHhccccCC--CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcc-cC---CceEEEEEcCCCce
Q psy9135 795 RKIFFKYFVTSP--KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCT-LG---VNTGLVLDIGYSEA 868 (1107)
Q Consensus 795 ~~~~~~~L~~~~--~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya-~g---~~tglVVDiG~~~T 868 (1107)
+|+| ..|++++ -+||+++||+.++|...|..|.|+|||+||||+|.+.-+++.|+|. .+ ..+|+||++|++.|
T Consensus 102 DY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~~~T 180 (645)
T KOG0681|consen 102 DYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGHSAT 180 (645)
T ss_pred HHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCCCcc
Confidence 9999 7899988 5899999999999999999999999999999999999999999993 33 33699999999999
Q ss_pred EEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 869 TLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 869 ~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
+|+||.||..+...++++++| |.+...||.+||+.+
T Consensus 181 ~vipvldG~~il~~~kRiN~G-G~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 181 HVIPVLDGRLILKDVKRINWG-GYQAGDYLSRLMQLK 216 (645)
T ss_pred eeEEEecCchhhhcceeeccC-cchHHHHHHHHHhcc
Confidence 999999999999999999999 999999999999875
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=340.29 Aligned_cols=396 Identities=18% Similarity=0.206 Sum_probs=270.1
Q ss_pred hhHHHHHHHHHHHHHhhccccCC---CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEE
Q psy9135 90 DDLYGLLIEFIRKIFFKYFVTSP---KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLV 166 (1107)
Q Consensus 90 ~~~~~~le~i~~~~~~~~L~~~~---~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglV 166 (1107)
+...+++.+||+|++.+.|++.+ ..+.+|++.|....+...+++..+||-+++|.++.+++++++++||+|.+++||
T Consensus 200 q~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CV 279 (618)
T KOG0797|consen 200 QRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACV 279 (618)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeE
Confidence 34467899999999999999987 468888888888888888889999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHH
Q psy9135 167 LDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIE 246 (1107)
Q Consensus 167 VDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e 246 (1107)
||||+++|+|+||.||.+++++..++++||+++++.|..+ |++.+ |||.-+... ..+++.+++
T Consensus 280 VdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~l--------------l~rs~--FPy~d~~v~-~~~d~lLl~ 342 (618)
T KOG0797|consen 280 VDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWL--------------LRRSG--FPYQDCDVL-APIDWLLLN 342 (618)
T ss_pred EEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHH--------------HHhcC--CCccccccc-ccccHHHHH
Confidence 9999999999999999999999999999999999999999 77755 778766554 478999999
Q ss_pred HHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCC
Q psy9135 247 DIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSD 326 (1107)
Q Consensus 247 ~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1107)
++||+.|++.......+......+++......|+..-+. +...++..||.|++-..... +.. ..++.+
T Consensus 343 ~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~D-------E~mlAPlaLF~P~lf~~~~t-k~~----~~q~~~ 410 (618)
T KOG0797|consen 343 QLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGD-------EVMLAPLALFYPNLFVIEGT-KSH----KNQSFP 410 (618)
T ss_pred HHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccc-------hhhccchhhhhhhhhhcccc-ccc----cccccC
Confidence 999999999988888887777777777777777654443 34568999999997432110 000 000001
Q ss_pred CccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCC
Q psy9135 327 GREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNN 406 (1107)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 406 (1107)
..+++-.++. |.+. ...++-++.+ .|...-....+ .+...+.+..
T Consensus 411 q~d~~d~fd~---------e~~~----------------~~~~~~~~~~------~g~~~l~ls~~---i~~~~~~~~~- 455 (618)
T KOG0797|consen 411 QPDREDLFDY---------EYLL----------------EDTWKQDFGG------GGNDGLQLSDS---IGFSNRIRDQ- 455 (618)
T ss_pred CCCcccccch---------hhhh----------------hhcccccccc------ccccccccccc---cccccccccc-
Confidence 0000000000 0000 0000000000 00000000000 0000000000
Q ss_pred CCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCC--C----CCCCHHHHHHHHHhcc-CccchhhhhccE
Q psy9135 407 NVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELD--L----DMLNIATIILDSLLKT-GRDMKKPLAENI 479 (1107)
Q Consensus 407 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~--~----~~~gL~e~I~~sI~~~-~~d~r~~L~~nI 479 (1107)
+|.-....++|..++....|..+.++ | ...+++++=.-+ . -..+|.++|..||..+ ..|.+++|++.|
T Consensus 456 --l~~~~d~~Elg~t~~d~f~p~~~s~~-g--slaa~~i~n~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSi 530 (618)
T KOG0797|consen 456 --LPEKPDKEELGVTLKDNFAPLEKSIV-G--SLAAASIMNKKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSI 530 (618)
T ss_pred --ccccccchhhccccccccCCchhhhh-h--hhhhhhhhcccceeccccchhhccchhHHHhhhhhccchhhHhhhhHH
Confidence 00000111123222222222222111 0 111222111110 0 1235667789999886 668999999999
Q ss_pred EEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCC--CCCccccchhHHhhcCCcccccccccHHHHHhcC
Q psy9135 480 LLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFP--AKENYVAWLGGAIFAATESYNKRAIQKDAYLNNN 557 (1107)
Q Consensus 480 vLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~--~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G 557 (1107)
.++||..++||+.+.|++.+....|+ +... ...|.|+.+| .||++.+|+||+|+|.+..-+++||++.||+.+|
T Consensus 531 l~Vgga~~~~g~~~~LEeRi~n~~pp--~~~~--I~~VsVip~prdMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G 606 (618)
T KOG0797|consen 531 LLVGGAGLFPGLVAALEERILNAIPP--GREA--IDTVSVIPPPRDMDPQFVAWKGAAILAILDFVRELWIENSDWQVHG 606 (618)
T ss_pred HhhcccccchhHHHHHHHHHhccCCc--cccc--cCceeecCCCcCCCchheEecchhhhhHHHHHHHHheechhHhhhh
Confidence 99999999999999999999987775 2222 4679999888 5899999999999999999999999999999999
Q ss_pred C
Q psy9135 558 M 558 (1107)
Q Consensus 558 ~ 558 (1107)
.
T Consensus 607 ~ 607 (618)
T KOG0797|consen 607 V 607 (618)
T ss_pred h
Confidence 7
|
|
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=271.93 Aligned_cols=285 Identities=17% Similarity=0.191 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHHHHhccccCC---CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEE
Q psy9135 786 LYGLLIEFIRKIFFKYFVTSP---KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLD 862 (1107)
Q Consensus 786 ~~d~le~i~~~~~~~~L~~~~---~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVD 862 (1107)
...++++||+|++.+.|++.+ ..+.++++.|....+...+++..+||-+++|.++.++.++++++||+|.+++||||
T Consensus 202 l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGlss~CVVd 281 (618)
T KOG0797|consen 202 LCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLSSACVVD 281 (618)
T ss_pred HHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCccceeEEE
Confidence 356899999999999999988 46889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhh----cccHHHHHHHHHhce
Q psy9135 863 IGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVE----NLSDSIIEDIKVCSC 938 (1107)
Q Consensus 863 iG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~----~l~~~~v~~iKe~~c 938 (1107)
||++.|+|+||-||.+++++..++++| |+++++.+..+|++.+ +|+.+ . ..++.+++++||+.|
T Consensus 282 iGAQkTsIaCVEdGvs~~ntri~L~YG-GdDitr~f~~ll~rs~----------FPy~d-~~v~~~~d~lLl~~LKe~Fc 349 (618)
T KOG0797|consen 282 IGAQKTSIACVEDGVSLPNTRIILPYG-GDDITRCFLWLLRRSG----------FPYQD-CDVLAPIDWLLLNQLKEKFC 349 (618)
T ss_pred ccCcceeEEEeecCccccCceEEeccC-CchHHHHHHHHHHhcC----------CCccc-ccccccccHHHHHHHHHHhc
Confidence 999999999999999999999999999 9999999999999987 22222 1 245679999999999
Q ss_pred eeccchHHHHHHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCC---------------------------
Q psy9135 939 FVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL--------------------------- 991 (1107)
Q Consensus 939 ~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~--------------------------- 991 (1107)
.........+........+......| ++.+ +.|...+|=.||.|.+
T Consensus 350 ~l~~a~~~vQ~~~F~~R~pn~~~~ky------tfk~-~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~ 422 (618)
T KOG0797|consen 350 HLRAAELGVQLTVFSYREPNPPTLKY------TFKL-GDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEY 422 (618)
T ss_pred cccHhhhhhhhhhhhccCCCCcceee------eeec-cchhhccchhhhhhhhhhccccccccccccCCCCcccccchhh
Confidence 98865433221111000000111111 1122 3334444444444310
Q ss_pred ---------------------------------------------------------------------------C----
Q psy9135 992 ---------------------------------------------------------------------------D---- 992 (1107)
Q Consensus 992 ---------------------------------------------------------------------------~---- 992 (1107)
.
T Consensus 423 ~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl 502 (618)
T KOG0797|consen 423 LLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGL 502 (618)
T ss_pred hhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccch
Confidence 0
Q ss_pred CCcHHHHHHHHHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCC-
Q psy9135 993 MLNIATIILDSLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFP- 1058 (1107)
Q Consensus 993 ~~gL~~~I~~sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~- 1058 (1107)
..++.+.|..||..|.+.|.++.| ||+ .+-|++.+....|. ....+.++.|+.+|
T Consensus 503 ~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~------~~~LEeRi~n~~pp-----~~~~I~~VsVip~pr 571 (618)
T KOG0797|consen 503 LLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGL------VAALEERILNAIPP-----GREAIDTVSVIPPPR 571 (618)
T ss_pred hhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhH------HHHHHHHHhccCCc-----cccccCceeecCCCc
Confidence 125556788889888657788877 777 88888877777662 12345678888665
Q ss_pred -CCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccceecc
Q psy9135 1059 -AKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPDWCNL 1100 (1107)
Q Consensus 1059 -~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~~~~ 1100 (1107)
.++++-+|.||+|||.+..-.++||++.||+-+|. +.-++|.
T Consensus 572 dMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 572 DMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred CCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 69999999999999999999999999999999995 7777765
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-26 Score=259.90 Aligned_cols=183 Identities=15% Similarity=0.085 Sum_probs=141.7
Q ss_pred EEEecCCceeEEeeecCcccccccccceeccCCccccceec---------------------cCchhhHHHHHHHHHHHH
Q psy9135 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYE---------------------YKDADDLYGLLIEFIRKI 103 (1107)
Q Consensus 45 iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~---------------------~~~~~~~~~~le~i~~~~ 103 (1107)
++||+||.++|+|++|++ +....||+|+..+... +.+++ .++.+.+|+.++.+|+|+
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~-~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~ 88 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTG-KVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYF 88 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCC-eEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHH
Confidence 777777777777787664 4556788887653211 01111 224556799999999999
Q ss_pred HhhccccCC-CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEE
Q psy9135 104 FFKYFVTSP-KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLL 177 (1107)
Q Consensus 104 ~~~~L~~~~-~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~ 177 (1107)
+.+.+...+ ..++++++.|...+...|+.+.+ +||.+|++.+++++++++|+|++|. .+++|||+|+++|+++
T Consensus 89 ~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs 167 (335)
T PRK13930 89 IKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVA 167 (335)
T ss_pred HHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEE
Confidence 955444333 46889999999999988887776 7999999999999999999999987 5789999999999999
Q ss_pred EeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeecc
Q psy9135 178 PVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 178 PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~ 257 (1107)
||.+|.++. ....++||+++|++|.++ +++.. . -..+...+|++|+++|++..
T Consensus 168 ~v~~g~~~~--~~~~~lGG~~id~~l~~~--------------l~~~~-~----------~~~~~~~ae~~K~~~~~~~~ 220 (335)
T PRK13930 168 VISLGGIVY--SESIRVAGDEMDEAIVQY--------------VRRKY-N----------LLIGERTAEEIKIEIGSAYP 220 (335)
T ss_pred EEEeCCEEe--ecCcCchhHHHHHHHHHH--------------HHHHh-C----------CCCCHHHHHHHHHHhhcCcC
Confidence 999999885 467899999999999998 44321 0 01346789999999998875
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=252.89 Aligned_cols=182 Identities=13% Similarity=0.057 Sum_probs=141.8
Q ss_pred eEEEecCCceeEEeeecCcccccccccceeccCCccccceecc---------------------CchhhHHHHHHHHHHH
Q psy9135 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEY---------------------KDADDLYGLLIEFIRK 102 (1107)
Q Consensus 44 ~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~~---------------------~~~~~~~~~le~i~~~ 102 (1107)
-|+||+||.++|+|++|++. ...+||+|+.++.... .+++| ++.+.+|+.++.+|++
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~-~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~ 84 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKK-VLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKY 84 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCe-EEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHH
Confidence 47888888888888988876 5689999998754211 11222 2455679999999999
Q ss_pred HHhhccccCCCCCe-EEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEE
Q psy9135 103 IFFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATL 176 (1107)
Q Consensus 103 ~~~~~L~~~~~~~~-vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V 176 (1107)
++.+.++. +.++| ++++.| .+....++++++.+||.+|++.+.++++|++|+|++|. .+++|||+|+++|++
T Consensus 85 ~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdv 162 (334)
T PRK13927 85 FIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEV 162 (334)
T ss_pred HHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEE
Confidence 99877776 66665 555555 66677777889999999999999999999999999987 457999999999999
Q ss_pred EEe-ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceee
Q psy9135 177 LPV-YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255 (1107)
Q Consensus 177 ~PV-~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v 255 (1107)
+++ ++|.+..+. .++||+++|++|.++ +.+.- . ...+...+|++|+++|++
T Consensus 163 s~v~~~~~~~~~~---~~lGG~~id~~l~~~--------------l~~~~-~----------~~~~~~~ae~iK~~~~~~ 214 (334)
T PRK13927 163 AVISLGGIVYSKS---VRVGGDKFDEAIINY--------------VRRNY-N----------LLIGERTAERIKIEIGSA 214 (334)
T ss_pred EEEecCCeEeeCC---cCChHHHHHHHHHHH--------------HHHHh-C----------cCcCHHHHHHHHHHhhcc
Confidence 999 788776654 479999999999998 43221 0 113567899999999988
Q ss_pred cc
Q psy9135 256 TT 257 (1107)
Q Consensus 256 ~~ 257 (1107)
..
T Consensus 215 ~~ 216 (334)
T PRK13927 215 YP 216 (334)
T ss_pred CC
Confidence 64
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-23 Score=237.13 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=117.1
Q ss_pred CchhhHHHHHHHHHHHHHhhccccCCCCC-eEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC----
Q psy9135 87 KDADDLYGLLIEFIRKIFFKYFVTSPKDK-RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV---- 161 (1107)
Q Consensus 87 ~~~~~~~~~le~i~~~~~~~~L~~~~~~~-~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~---- 161 (1107)
++.+.+|+.++.+|+|++.+.+......+ +++++.|..++...|+. ++.+||.+|++.++++++|++|+|++|.
T Consensus 70 ~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~ 148 (333)
T TIGR00904 70 DGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEE 148 (333)
T ss_pred CCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccC
Confidence 45677899999999999977665432222 69999999999999987 6678999999999999999999999987
Q ss_pred -ceEEEEEeCCCceEEEEe-ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccC
Q psy9135 162 -NTGLVLDIGYSEATLLPV-YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVEN 239 (1107)
Q Consensus 162 -~tglVVDiG~~~T~V~PV-~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 239 (1107)
.+++|||+|+++|++++| ++|.+..+. .++||+++|+.|.++ +++.. . ..
T Consensus 149 ~~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~--------------l~~~~-~----------~~ 200 (333)
T TIGR00904 149 PTGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINY--------------IRRTY-N----------LL 200 (333)
T ss_pred CceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHH--------------HHHHh-c----------cc
Confidence 689999999999999999 888777654 489999999999998 43221 0 11
Q ss_pred CCHHHHHHHHHhceeecc
Q psy9135 240 LSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 240 ~~~~~~e~iKe~~c~v~~ 257 (1107)
.+...+|++|+++|++..
T Consensus 201 ~~~~~ae~lK~~l~~~~~ 218 (333)
T TIGR00904 201 IGEQTAERIKIEIGSAYP 218 (333)
T ss_pred CCHHHHHHHHHHHhcccc
Confidence 356789999999998764
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=230.36 Aligned_cols=142 Identities=13% Similarity=0.203 Sum_probs=118.2
Q ss_pred CchhhHHHHHHHHHHHHHhh---ccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCC---
Q psy9135 87 KDADDLYGLLIEFIRKIFFK---YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG--- 160 (1107)
Q Consensus 87 ~~~~~~~~~le~i~~~~~~~---~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g--- 160 (1107)
++.+.+|+.++.+|+|++.+ .++.++..++++++.|...+..+|+.+.+ .||..|++.+.++.++++|++++|
T Consensus 68 ~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~ 146 (335)
T PRK13929 68 DGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPV 146 (335)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCc
Confidence 35567899999999999974 56666666799999999999999999999 999999999999999999999997
Q ss_pred --CceEEEEEeCCCceEEEEe-ecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccc
Q psy9135 161 --VNTGLVLDIGYSEATLLPV-YEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDV 237 (1107)
Q Consensus 161 --~~tglVVDiG~~~T~V~PV-~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 237 (1107)
..+++|||+|+++|+++++ ++|....+ ..++||+++|++|.+. +++.. ..
T Consensus 147 ~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~--------------l~~~~-~~--------- 199 (335)
T PRK13929 147 DEPVANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSF--------------VRKKY-NL--------- 199 (335)
T ss_pred CCCceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHH--------------HHHHh-Cc---------
Confidence 4689999999999999999 66655443 4689999999999998 54321 11
Q ss_pred cCCCHHHHHHHHHhceeecc
Q psy9135 238 ENLSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 238 ~~~~~~~~e~iKe~~c~v~~ 257 (1107)
..+...+|++|+++|++..
T Consensus 200 -~~~~~~AE~iK~~l~~~~~ 218 (335)
T PRK13929 200 -LIGERTAEQVKMEIGYALI 218 (335)
T ss_pred -CcCHHHHHHHHHHHcCCCC
Confidence 1246789999999998854
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-22 Score=229.72 Aligned_cols=284 Identities=13% Similarity=0.073 Sum_probs=205.7
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCC-CCc-------cc-----------ee-ecCCHHhhHHHHHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT-NKL-------RN-----------LY-EYKDADDLYGLLIEFIRKI 797 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~-~~~-------~~-----------~~-~~~~~~~~~d~le~i~~~~ 797 (1107)
.|+||+||+++|+|++|++ +....||+++.... ++. +. .+ ..++.+.+|+.++.+|+|+
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e~ll~~~ 88 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATEAMLRYF 88 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHHHHHHHH
Confidence 3999999999999999876 46668999986542 110 00 00 1246778899999999999
Q ss_pred HHhccccCC-CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEE
Q psy9135 798 FFKYFVTSP-KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLL 871 (1107)
Q Consensus 798 ~~~~L~~~~-~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~ 871 (1107)
+.+.+...+ ...+++++.|...+...|+.+.+ +||.++++.+++++++++|+|++|. ++++|||+|++.|+++
T Consensus 89 ~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs 167 (335)
T PRK13930 89 IKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVA 167 (335)
T ss_pred HHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEE
Confidence 965555333 46789999999999988888777 6899999999999999999999987 5789999999999999
Q ss_pred EEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHh
Q psy9135 872 PVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 951 (1107)
Q Consensus 872 PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~ 951 (1107)
||.+|.++. ....++| |+++|+.|.+++.++. .+ ..+.+.++++|+++|++..+....+...
T Consensus 168 ~v~~g~~~~--~~~~~lG-G~~id~~l~~~l~~~~---------~~------~~~~~~ae~~K~~~~~~~~~~~~~~~~~ 229 (335)
T PRK13930 168 VISLGGIVY--SESIRVA-GDEMDEAIVQYVRRKY---------NL------LIGERTAEEIKIEIGSAYPLDEEESMEV 229 (335)
T ss_pred EEEeCCEEe--ecCcCch-hHHHHHHHHHHHHHHh---------CC------CCCHHHHHHHHHHhhcCcCCCCCceEEE
Confidence 999999875 4678999 9999999999997652 11 1233579999999999886531111000
Q ss_pred cCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------CCCCCCC
Q psy9135 952 KNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET--------QYFPFRC 1023 (1107)
Q Consensus 952 ~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L--------~Gf~~~~ 1023 (1107)
. .....+.+|+ .+.+ +.+++ .|++|.| ..+|.+.|.++|++|+ .+.+.++ .|-+..+
T Consensus 230 ~------~~~~~~~~~~--~~~i-~~~~~--~e~i~~~---~~~i~~~i~~~l~~~~-~~~~~~~~~~~IvL~GG~s~ip 294 (335)
T PRK13930 230 R------GRDLVTGLPK--TIEI-SSEEV--REALAEP---LQQIVEAVKSVLEKTP-PELAADIIDRGIVLTGGGALLR 294 (335)
T ss_pred E------CccCCCCCCe--eEEE-CHHHH--HHHHHHH---HHHHHHHHHHHHHhCC-HHHhhHHHhCCEEEECchhcch
Confidence 0 0111233443 4556 45565 4888876 2489999999999998 7766433 2222222
Q ss_pred CccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1024 WVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1024 ~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
++.+||++++.. + +++ ..+|..++=+|+++++.
T Consensus 295 g~~~~l~~~~~~--~-------------v~~---~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 295 GLDKLLSEETGL--P-------------VHI---AEDPLTCVARGTGKALE 327 (335)
T ss_pred hHHHHHHHHHCC--C-------------cee---cCCHHHHHHHHHHHHHh
Confidence 229999998852 2 112 22567788899999974
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=224.83 Aligned_cols=276 Identities=12% Similarity=0.053 Sum_probs=202.3
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCC-Cc------------c--c-----eeecCCHHhhHHHHHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN-KL------------R--N-----LYEYKDADDLYGLLIEFIRKI 797 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~-~~------------~--~-----~~~~~~~~~~~d~le~i~~~~ 797 (1107)
.|+||+||.++|+|++|++. ...+||+++.++.. .. + . ....++.+.+|+.++.+|+++
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~ll~~~ 85 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVTEKMLKYF 85 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHHHHHHHHH
Confidence 59999999999999999877 56899999987542 21 0 0 012336778999999999999
Q ss_pred HHhccccCCCCce-EEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEE
Q psy9135 798 FFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLL 871 (1107)
Q Consensus 798 ~~~~L~~~~~~~~-vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~ 871 (1107)
+.+.++. +.++| ++++.| .+....++++++.+||.++++.++++++|++|+|++|. ++++|||+|++.|+++
T Consensus 86 ~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs 163 (334)
T PRK13927 86 IKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVA 163 (334)
T ss_pred HHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEE
Confidence 9887766 66664 555555 56666777889999999999999999999999999987 4579999999999999
Q ss_pred EE-EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 872 PV-YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 872 PV-~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
|+ ++|+...+.+ ++| |+++|+.|.+++.++. .+ ..+...++++|+++|++..+....+..
T Consensus 164 ~v~~~~~~~~~~~---~lG-G~~id~~l~~~l~~~~---------~~------~~~~~~ae~iK~~~~~~~~~~~~~~~~ 224 (334)
T PRK13927 164 VISLGGIVYSKSV---RVG-GDKFDEAIINYVRRNY---------NL------LIGERTAERIKIEIGSAYPGDEVLEME 224 (334)
T ss_pred EEecCCeEeeCCc---CCh-HHHHHHHHHHHHHHHh---------Cc------CcCHHHHHHHHHHhhccCCCCCCceEE
Confidence 99 8888776654 799 9999999999997542 11 122347999999999987532100000
Q ss_pred hcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------------
Q psy9135 951 AKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET-------------- 1016 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L-------------- 1016 (1107)
.. .....+.+|+ .+.+ +.++|. |++|+|- .+|.+.|.++|++|+ .++++.+
T Consensus 225 ~~------~~~~~~~~~~--~~~i-~~~~~~--e~i~~~~---~~i~~~i~~~l~~~~-~~~~~~~~~~~IvL~GG~s~i 289 (334)
T PRK13927 225 VR------GRDLVTGLPK--TITI-SSNEIR--EALQEPL---SAIVEAVKVALEQTP-PELAADIVDRGIVLTGGGALL 289 (334)
T ss_pred Ee------CcccCCCCCe--EEEE-CHHHHH--HHHHHHH---HHHHHHHHHHHHHCC-chhhhhhhcCCEEEECchhhh
Confidence 00 0011123333 4666 566663 8888763 479999999999998 7765432
Q ss_pred CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1017 QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1017 ~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
||+ .+||++++.. + +++ ..+|..++=.||++++.
T Consensus 290 pgl------~~~l~~~~~~--~-------------v~~---~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 290 RGL------DKLLSEETGL--P-------------VHV---AEDPLTCVARGTGKALE 323 (334)
T ss_pred hHH------HHHHHHHHCC--C-------------cEe---cCCHHHHHHHHHHHHHh
Confidence 677 9999998842 2 122 23567888899999974
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-19 Score=204.25 Aligned_cols=142 Identities=13% Similarity=0.101 Sum_probs=113.1
Q ss_pred CchhhHHHHHHHHHHHHHhhcccc-CCCCCe-EEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC---
Q psy9135 87 KDADDLYGLLIEFIRKIFFKYFVT-SPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV--- 161 (1107)
Q Consensus 87 ~~~~~~~~~le~i~~~~~~~~L~~-~~~~~~-vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~--- 161 (1107)
++.+.+|+.++.+|+|++. ++.. .+.++| ++++.|.. ....+++.++..||..|++.+.+++++++|+|++|.
T Consensus 67 ~G~i~d~~~~~~~l~~~~~-~~~~~~~~~~p~~vitvP~~-~~~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~ 144 (336)
T PRK13928 67 DGVIADYDVTEKMLKYFIN-KACGKRFFSKPRIMICIPTG-ITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDIS 144 (336)
T ss_pred CCeEecHHHHHHHHHHHHH-HHhccCCCCCCeEEEEeCCC-CCHHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCccc
Confidence 3667789999999999994 4433 345677 88888555 455677788899999999999999999999999987
Q ss_pred --ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccC
Q psy9135 162 --NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVEN 239 (1107)
Q Consensus 162 --~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 239 (1107)
..++|||+|+++|+|++|.+|.++.. ...++||+++|+.|.+. +++.. . ..
T Consensus 145 ~~~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~--------------l~~~~-~----------~~ 197 (336)
T PRK13928 145 QPSGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRY--------------IRKKY-K----------LL 197 (336)
T ss_pred CCCeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHH--------------HHHHh-c----------hh
Confidence 67999999999999999999987754 46899999999999998 43211 0 01
Q ss_pred CCHHHHHHHHHhceeecc
Q psy9135 240 LSDSIIEDIKVCSCFVTT 257 (1107)
Q Consensus 240 ~~~~~~e~iKe~~c~v~~ 257 (1107)
++...+|++|+++|++..
T Consensus 198 ~~~~~ae~lK~~~~~~~~ 215 (336)
T PRK13928 198 IGERTAEEIKIKIGTAFP 215 (336)
T ss_pred cCHHHHHHHHHHhccccc
Confidence 245679999999987643
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=200.82 Aligned_cols=144 Identities=17% Similarity=0.180 Sum_probs=108.9
Q ss_pred chhhHHHHHHHHHHHHHhhccccC-CCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----
Q psy9135 88 DADDLYGLLIEFIRKIFFKYFVTS-PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV----- 161 (1107)
Q Consensus 88 ~~~~~~~~le~i~~~~~~~~L~~~-~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~----- 161 (1107)
+.+.+++..+.+++|.+.+..+.. .....++++.|.-.+...|+.+.+.+- ..|+..++++++|+++++|+|.
T Consensus 66 GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~ 144 (326)
T PF06723_consen 66 GVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEP 144 (326)
T ss_dssp TEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSS
T ss_pred CcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCC
Confidence 556678999999999997766642 355669999999999999999998884 6899999999999999999985
Q ss_pred ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCC
Q psy9135 162 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLS 241 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 241 (1107)
...+|||||+++|.++-+..|-++.. +.+++||+++++.+.+. ++++.. -.++
T Consensus 145 ~g~miVDIG~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~--------------ir~~y~-----------l~Ig 197 (326)
T PF06723_consen 145 RGSMIVDIGGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRY--------------IREKYN-----------LLIG 197 (326)
T ss_dssp S-EEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHH--------------HHHHHS-----------EE--
T ss_pred CceEEEEECCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHH--------------HHHhhC-----------cccC
Confidence 36799999999999999999999865 88999999999999999 554421 2367
Q ss_pred HHHHHHHHHhceeeccch
Q psy9135 242 DSIIEDIKVCSCFVTTME 259 (1107)
Q Consensus 242 ~~~~e~iKe~~c~v~~~~ 259 (1107)
...+|++|+++.++....
T Consensus 198 ~~tAE~iK~~~g~~~~~~ 215 (326)
T PF06723_consen 198 ERTAEKIKIEIGSASPPE 215 (326)
T ss_dssp HHHHHHHHHHH-BSS--H
T ss_pred HHHHHHHHHhcceeeccC
Confidence 899999999999887543
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=198.48 Aligned_cols=276 Identities=13% Similarity=0.077 Sum_probs=199.1
Q ss_pred EEEecCcceEEEeccCCCCccEEEecceeccCC----CC-c-------cc------------eeecCCHHhhHHHHHHHH
Q psy9135 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT----NK-L-------RN------------LYEYKDADDLYGLLIEFI 794 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~----~~-~-------~~------------~~~~~~~~~~~d~le~i~ 794 (1107)
|=||+||.++++-..+.. -....||+++.... .+ . +. .-..++.+.+|+.++++|
T Consensus 5 ~giDlGt~~s~i~~~~~~-~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~~~~ 83 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG-IVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTEKMI 83 (333)
T ss_pred eEEecCcceEEEEECCCC-EEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHHHHH
Confidence 889999999998654432 23344777765533 11 0 00 002346778999999999
Q ss_pred HHHHHhccccCCCCc-eEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCce
Q psy9135 795 RKIFFKYFVTSPKDK-RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEA 868 (1107)
Q Consensus 795 ~~~~~~~L~~~~~~~-~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T 868 (1107)
+|++.+.+....... +++++.|...+...|+. ++.+||.++++.++++++|++|+|++|. ++++|||+|++.|
T Consensus 84 ~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gtt 162 (333)
T TIGR00904 84 KYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTT 162 (333)
T ss_pred HHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeE
Confidence 999987665332222 69999999999999987 5568999999999999999999999997 6899999999999
Q ss_pred EEEEE-EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHH-
Q psy9135 869 TLLPV-YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERS- 946 (1107)
Q Consensus 869 ~v~PV-~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~- 946 (1107)
++++| ++|+...+.+ ++| |+++|+.|.+++.++. . ...+.+.++++|+++|++..+...
T Consensus 163 dvs~v~~~~~~~~~~~---~lG-G~did~~l~~~l~~~~---------~------~~~~~~~ae~lK~~l~~~~~~~~~~ 223 (333)
T TIGR00904 163 EVAVISLGGIVVSRSI---RVG-GDEFDEAIINYIRRTY---------N------LLIGEQTAERIKIEIGSAYPLNDEP 223 (333)
T ss_pred EEEEEEeCCEEecCCc---cch-HHHHHHHHHHHHHHHh---------c------ccCCHHHHHHHHHHHhccccccccc
Confidence 99999 8888776654 799 9999999999987541 0 112345899999999998754210
Q ss_pred HHHHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC----------
Q psy9135 947 AEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET---------- 1016 (1107)
Q Consensus 947 ~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L---------- 1016 (1107)
.+.... .....+.+|++. .+ ..+ .+.|++|+| ..+|.+.|.+++++|+ .+.+..+
T Consensus 224 ~~~~~~------~~~~~~~~~~~~--~i-~~~--~~~e~i~~~---~~~i~~~i~~~l~~~~-~~~~~~l~~~~IvL~GG 288 (333)
T TIGR00904 224 RKMEVR------GRDLVTGLPRTI--EI-TSV--EVREALQEP---VNQIVEAVKRTLEKTP-PELAADIVERGIVLTGG 288 (333)
T ss_pred cceeec------CccccCCCCeEE--EE-CHH--HHHHHHHHH---HHHHHHHHHHHHHhCC-chhhhhhccCCEEEECc
Confidence 000000 112345677754 44 222 577999987 3478999999999998 7766433
Q ss_pred ----CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1017 ----QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1017 ----~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
||+ .+||++++.. | +. ...+|..++=.||++++.
T Consensus 289 ss~ipgl------~e~l~~~~~~--~-------------v~---~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 289 GALLRNL------DKLLSKETGL--P-------------VI---VADDPLLCVAKGTGKALE 326 (333)
T ss_pred ccchhhH------HHHHHHHHCC--C-------------ce---ecCChHHHHHHHHHHHHh
Confidence 777 9999999842 2 11 223678889999999864
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.8e-18 Score=193.87 Aligned_cols=272 Identities=13% Similarity=0.132 Sum_probs=197.6
Q ss_pred eEEEecCcceEEEeccCCCCcc-EEEecceeccCCCC-c--------------------cceeecCCHHhhHHHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPK-GFIKSQVKDPHTNK-L--------------------RNLYEYKDADDLYGLLIEFIR 795 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~-~i~ps~vg~~~~~~-~--------------------~~~~~~~~~~~~~d~le~i~~ 795 (1107)
.+=||+||.++++=..+. +. ...||+++...... . ... ..++.+.+||.++.+|+
T Consensus 6 ~~giDlGt~~~~i~~~~~--~~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~~p-i~~G~I~d~d~~~~~l~ 82 (335)
T PRK13929 6 EIGIDLGTANILVYSKNK--GIILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAVRP-MKDGVIADYDMTTDLLK 82 (335)
T ss_pred eEEEEcccccEEEEECCC--cEEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEEec-CCCCccCCHHHHHHHHH
Confidence 488999999999732232 22 12477776543221 0 011 13467789999999999
Q ss_pred HHHHh---ccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC-----CceEEEEEcCCCc
Q psy9135 796 KIFFK---YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG-----VNTGLVLDIGYSE 867 (1107)
Q Consensus 796 ~~~~~---~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g-----~~tglVVDiG~~~ 867 (1107)
+++.+ .++..++..+++++.|+..+..+|+.+.+ .||.++++.+++++++++|++++| ..+++|||+|++.
T Consensus 83 ~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gt 161 (335)
T PRK13929 83 QIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGT 161 (335)
T ss_pred HHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCe
Confidence 99974 56666767899999999999999999999 899999999999999999999997 5689999999999
Q ss_pred eEEEEE-EcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHH
Q psy9135 868 ATLLPV-YEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERS 946 (1107)
Q Consensus 868 T~v~PV-~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~ 946 (1107)
|++++| ++|....+ ..++| |+++|++|.+.+.++. .+. .+...++++|+++|++..+...
T Consensus 162 t~v~vi~~~~~~~~~---~~~~G-G~~id~~l~~~l~~~~---------~~~------~~~~~AE~iK~~l~~~~~~~~~ 222 (335)
T PRK13929 162 TEVAIISFGGVVSCH---SIRIG-GDQLDEDIVSFVRKKY---------NLL------IGERTAEQVKMEIGYALIEHEP 222 (335)
T ss_pred EEEEEEEeCCEEEec---CcCCH-HHHHHHHHHHHHHHHh---------CcC------cCHHHHHHHHHHHcCCCCCCCC
Confidence 999999 66655443 35799 9999999999997532 111 1234899999999998653211
Q ss_pred HHHHhcCCCCCCCCceEEeCCCCCEEEeccccccc--ccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------
Q psy9135 947 AEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRET--AFEVLFELDLDMLNIATIILDSLLSVASSDGREET-------- 1016 (1107)
Q Consensus 947 ~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~--~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L-------- 1016 (1107)
...... .....+.+| ..+.+ +.++|. ++|.+|+ |.++|.++|++|+ .+++..+
T Consensus 223 ~~~~v~------g~~~~~~~p--~~i~i-~~~~~~~~i~~~l~~-------i~~~i~~~L~~~~-~~l~~~~~~~gIvLt 285 (335)
T PRK13929 223 ETMEVR------GRDLVTGLP--KTITL-ESKEIQGAMRESLLH-------ILEAIRATLEDCP-PELSGDIVDRGVILT 285 (335)
T ss_pred ceEEEe------CCccCCCCC--eEEEE-cHHHHHHHHHHHHHH-------HHHHHHHHHHhCC-cccchhhcCCCEEEE
Confidence 000000 001123344 46777 566776 5888874 9999999999998 7776443
Q ss_pred ------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhh
Q psy9135 1017 ------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFA 1073 (1107)
Q Consensus 1017 ------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIla 1073 (1107)
||| .+||++++.. | +++ ..+|..++=+|+..+-
T Consensus 286 GG~s~lpgl------~e~l~~~~~~--~-------------v~~---~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 286 GGGALLNGI------KEWLSEEIVV--P-------------VHV---AANPLESVAIGTGRSL 324 (335)
T ss_pred chhhhhhhH------HHHHHHHHCC--C-------------cee---CCCHHHHHHHHHHHHH
Confidence 777 9999999853 3 111 2367788888988773
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-15 Score=170.32 Aligned_cols=283 Identities=13% Similarity=0.074 Sum_probs=187.2
Q ss_pred EEEecCcceEEEeccCCCCccEEEecceeccCCC-Cc------------c---cee----ecCCHHhhHHHHHHHHHHHH
Q psy9135 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN-KL------------R---NLY----EYKDADDLYGLLIEFIRKIF 798 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~-~~------------~---~~~----~~~~~~~~~d~le~i~~~~~ 798 (1107)
+=||+|+.++++-..++. -....||++...... .. + ... ..++.+.+|+.++++|+|++
T Consensus 6 ~gIDlGt~~~~i~~~~~~-~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~~~l~~~~ 84 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG-IVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTEKMLKYFI 84 (336)
T ss_pred eEEEcccccEEEEECCCC-EEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHHHHHHHHH
Confidence 889999999999766442 111235555443211 10 0 111 13477889999999999999
Q ss_pred HhccccCCCCce-EEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEE
Q psy9135 799 FKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLP 872 (1107)
Q Consensus 799 ~~~L~~~~~~~~-vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~P 872 (1107)
.+.....+.++| ++++.|...+ ..+++.++..||..+++.+.+++++++|+|++|. +.++|||+|++.|.+++
T Consensus 85 ~~~~~~~~~~~p~~vitvP~~~~-~~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsv 163 (336)
T PRK13928 85 NKACGKRFFSKPRIMICIPTGIT-SVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAV 163 (336)
T ss_pred HHHhccCCCCCCeEEEEeCCCCC-HHHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEE
Confidence 443223345666 8888866654 5566777788899999999999999999999987 67999999999999999
Q ss_pred EEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhc
Q psy9135 873 VYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAK 952 (1107)
Q Consensus 873 V~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~ 952 (1107)
|.+|..+.+ ...++| |+++|+.|.+.+.++. .. ......++++|+++|++..+....+....
T Consensus 164 v~~g~~~~~--~~~~lG-G~did~~i~~~l~~~~---------~~------~~~~~~ae~lK~~~~~~~~~~~~~~~~v~ 225 (336)
T PRK13928 164 LSLGGIVTS--SSIKVA-GDKFDEAIIRYIRKKY---------KL------LIGERTAEEIKIKIGTAFPGAREEEMEIR 225 (336)
T ss_pred EEeCCEEEe--CCcCCH-HHHHHHHHHHHHHHHh---------ch------hcCHHHHHHHHHHhcccccccCCcEEEEe
Confidence 999987754 367999 9999999999997542 11 12234799999999887543210000000
Q ss_pred CCCCCCCCceEEeCCCCCEEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------CCCCCCCC
Q psy9135 953 NPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET--------QYFPFRCW 1024 (1107)
Q Consensus 953 ~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L--------~Gf~~~~~ 1024 (1107)
.....+.+|+ .+.+ ..++|. |+++.+ ...+.+.|.+++.+++ .+++..+ .|-+..++
T Consensus 226 ------g~~~~~~~~~--~~~i-~~~~~~--eii~~~---~~~i~~~i~~~l~~~~-~~~~~~~i~~~IvL~GG~s~ipg 290 (336)
T PRK13928 226 ------GRDLVTGLPK--TITV-TSEEIR--EALKEP---VSAIVQAVKSVLERTP-PELSADIIDRGIIMTGGGALLHG 290 (336)
T ss_pred ------cccccCCCce--EEEE-CHHHHH--HHHHHH---HHHHHHHHHHHHHhCC-ccccHhhcCCCEEEECcccchhh
Confidence 0001122333 2555 344443 666543 2368888999999998 6655322 22222222
Q ss_pred ccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1025 VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1025 ~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
+.++|++++.. | +++ ..+|..++=+||++++.
T Consensus 291 i~e~l~~~~~~--~-------------v~~---~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 291 LDKLLAEETKV--P-------------VYI---AEDPISCVALGTGKMLE 322 (336)
T ss_pred HHHHHHHHHCC--C-------------cee---cCCHHHHHHHHHHHHHh
Confidence 29999988853 2 112 23678899999999964
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.1e-13 Score=143.66 Aligned_cols=205 Identities=14% Similarity=0.118 Sum_probs=144.1
Q ss_pred ccceeecCCCCccccccCCC----CCCCeEEEecCCceeEEeeecCcccccccccceeccCCccccceeccCchhhHHHH
Q psy9135 20 KTGVVLDIGSKYTKYGIFGS----FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGL 95 (1107)
Q Consensus 20 ~~~vViD~Gs~~tk~G~~~~----~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~~~~~~~~~~~ 95 (1107)
.+.+-||.|+++|++..-|. .++.+|-++.++.+-++=.-|++.-+ ++||...+..--.--.++.+.+++.
T Consensus 6 s~diGIDLGTanTlV~~k~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~-----MlGrTP~ni~aiRPmkdGVIAd~~~ 80 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQ-----MLGRTPGNIVAIRPMKDGVIADFEV 80 (342)
T ss_pred cccceeeecccceEEEEcCceEEecCceEEEEeecCCCceEEEehHHHHH-----HhccCCCCceEEeecCCcEeecHHH
Confidence 34788999999999974443 45556667775344444334554432 4444432221000112355677888
Q ss_pred HHHHHHHHHhhccccC--CCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEE
Q psy9135 96 LIEFIRKIFFKYFVTS--PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLD 168 (1107)
Q Consensus 96 le~i~~~~~~~~L~~~--~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVD 168 (1107)
.+.++.|...+..+-. ...-+++++.|.-.+.-.|+.+-|.+ ++-+...+++.++|.+|+.++|. +-.+|||
T Consensus 81 te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvD 159 (342)
T COG1077 81 TELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVD 159 (342)
T ss_pred HHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEE
Confidence 8888888875444322 23345788888888888787776655 55688899999999999999986 4489999
Q ss_pred eCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHH
Q psy9135 169 IGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDI 248 (1107)
Q Consensus 169 iG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~i 248 (1107)
||..+|.|.-+..|-++.. ....+||+.+++-+.+. +++... -.+.+..+|+|
T Consensus 160 IGgGTTevaVISlggiv~~--~Sirv~GD~~De~Ii~y--------------vr~~~n-----------l~IGe~taE~i 212 (342)
T COG1077 160 IGGGTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVY--------------VRKKYN-----------LLIGERTAEKI 212 (342)
T ss_pred eCCCceeEEEEEecCEEEE--eeEEEecchhhHHHHHH--------------HHHHhC-----------eeecHHHHHHH
Confidence 9999999999988887765 56678999999999988 555432 23568889999
Q ss_pred HHhceeecc
Q psy9135 249 KVCSCFVTT 257 (1107)
Q Consensus 249 Ke~~c~v~~ 257 (1107)
|.+..++..
T Consensus 213 K~eiG~a~~ 221 (342)
T COG1077 213 KIEIGSAYP 221 (342)
T ss_pred HHHhccccc
Confidence 999988875
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-13 Score=149.95 Aligned_cols=283 Identities=14% Similarity=0.103 Sum_probs=190.1
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc-------------c---cee----ecCCHHhhHHHHHHHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-------------R---NLY----EYKDADDLYGLLIEFIRK 796 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~-------------~---~~~----~~~~~~~~~d~le~i~~~ 796 (1107)
.-+=||+||.+|++-..+. .=....||+++.+..... | .+- ..+|.+.|++..+.+++|
T Consensus 2 ~~igIDLGT~~t~i~~~~~-Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~~~~~l~~ 80 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGK-GIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEAAEEMLRY 80 (326)
T ss_dssp SEEEEEE-SSEEEEEETTT-EEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHHHHHHHHH
T ss_pred CceEEecCcccEEEEECCC-CEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHHHHHHHHH
Confidence 3578999999999944443 233346888886654321 0 110 124788899999999999
Q ss_pred HHHhcccc-CCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCc-----eEEEEEcCCCceEE
Q psy9135 797 IFFKYFVT-SPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN-----TGLVLDIGYSEATL 870 (1107)
Q Consensus 797 ~~~~~L~~-~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~-----tglVVDiG~~~T~v 870 (1107)
.+.+..+- ....-.++++.|.-.+...|+.+.+.+- ..++..++++++|+++++|+|.. ..+|||+|++.|.+
T Consensus 81 ~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~-~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdi 159 (326)
T PF06723_consen 81 FLKKALGRRSFFRPRVVICVPSGITEVERRALIDAAR-QAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDI 159 (326)
T ss_dssp HHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHH-HTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEE
T ss_pred HHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEE
Confidence 99877764 3356679999999999999999999985 48999999999999999999843 57999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
.-+..|-++. .+.+++| |+++++.+.+.++++. . ..++...++.+|++++++.........
T Consensus 160 avislggiv~--s~si~~g-G~~~DeaI~~~ir~~y---------~------l~Ig~~tAE~iK~~~g~~~~~~~~~~~- 220 (326)
T PF06723_consen 160 AVISLGGIVA--SRSIRIG-GDDIDEAIIRYIREKY---------N------LLIGERTAEKIKIEIGSASPPEEEESM- 220 (326)
T ss_dssp EEEETTEEEE--EEEES-S-HHHHHHHHHHHHHHHH---------S------EE--HHHHHHHHHHH-BSS--HHHHEE-
T ss_pred EEEECCCEEE--EEEEEec-CcchhHHHHHHHHHhh---------C------cccCHHHHHHHHHhcceeeccCCCceE-
Confidence 9999998875 4778999 9999999999998873 1 235567999999999998865422211
Q ss_pred hcCCCCCCCCceEEeCCCCC--EEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--------CCCC
Q psy9135 951 AKNPDHKYPSGFMYPLKNGK--KIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET--------QYFP 1020 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~Lpdg~--~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L--------~Gf~ 1020 (1107)
.-.--.+-+|- .+.++..+-..+.+..++ .|.+.|.+++.++| +++..++ .|-+
T Consensus 221 ---------~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~------~I~~~i~~~Le~~p-Pel~~DI~~~GI~LtGGga 284 (326)
T PF06723_consen 221 ---------EVRGRDLITGLPKSIEITSSEVREAIEPPVD------QIVEAIKEVLEKTP-PELAADILENGIVLTGGGA 284 (326)
T ss_dssp ---------EEEEEETTTTCEEEEEEEHHHHHHHHHHHHH------HHHHHHHHHHHTS--HHHHHHHHHH-EEEESGGG
T ss_pred ---------EEECccccCCCcEEEEEcHHHHHHHHHHHHH------HHHHHHHHHHHhCC-HHHHHHHHHCCEEEEChhh
Confidence 01111223332 355544455555555554 69999999999999 9988776 2323
Q ss_pred CCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1021 FRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1021 ~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
++.++.++|++|+. +| +++ ..+|.+++-.|+..+..
T Consensus 285 ~l~Gl~~~i~~~~~--~p-------------V~v---a~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 285 LLRGLDEYISEETG--VP-------------VRV---ADDPLTAVARGAGKLLE 320 (326)
T ss_dssp GSBTHHHHHHHHHS--S--------------EEE----SSTTTHHHHHHHHTTC
T ss_pred hhccHHHHHHHHHC--CC-------------EEE---cCCHHHHHHHHHHHHHh
Confidence 33333999999985 33 222 33788999999988764
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-11 Score=127.96 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=91.1
Q ss_pred chhhHHHHHHHHHHHHHhh---ccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceE
Q psy9135 88 DADDLYGLLIEFIRKIFFK---YFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 164 (1107)
Q Consensus 88 ~~~~~~~~le~i~~~~~~~---~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tg 164 (1107)
+.+.+.+..+.+++++... .++ ..-..++++.|......+|+.+. -.++.-|+.-+.+..++++++.+++....
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~-~a~~~aGl~~~~li~ep~Aaa~~~~~~~~ 110 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIV-NVIESAGIEVLHVLDEPTAAAAVLQIKNG 110 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHH-HHHHHcCCceEEEeehHHHHHHHhcCCCc
Confidence 4455667777777777632 233 23467999999888888887666 45566799999999999999999888788
Q ss_pred EEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 165 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 165 lVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+|||+|+++|+++-+.+|.++. .+..++||+++|+.+.+.
T Consensus 111 ~vvDiGggtt~i~i~~~G~i~~--~~~~~~GG~~it~~Ia~~ 150 (239)
T TIGR02529 111 AVVDVGGGTTGISILKKGKVIY--SADEPTGGTHMSLVLAGA 150 (239)
T ss_pred EEEEeCCCcEEEEEEECCeEEE--EEeeecchHHHHHHHHHH
Confidence 9999999999999999998775 467899999999988766
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=121.15 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHh---hccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEe
Q psy9135 93 YGLLIEFIRKIFF---KYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDI 169 (1107)
Q Consensus 93 ~~~le~i~~~~~~---~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDi 169 (1107)
++...+.+++... +.++.+ -..++++.|......+|..+. -..+.-|+.-..+..++.++..+++...++|||+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDI 142 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDI 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEe
Confidence 4555555555442 233443 345667888877666677665 7778889999989999999988887777899999
Q ss_pred CCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 170 GYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 170 G~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
|+++|+++-+.+|.+... ...++||+++|+.+.+.
T Consensus 143 Gggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~ 177 (267)
T PRK15080 143 GGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGA 177 (267)
T ss_pred CCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHH
Confidence 999999999999988754 57899999999998776
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-06 Score=107.73 Aligned_cols=92 Identities=18% Similarity=0.104 Sum_probs=74.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEecc
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPVL 186 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl~ 186 (1107)
-..+++|.|.+.+..+|+.+. -..+.-|++-+.++.+|.+|++++|. .+-+|+|+|+++++|+-+. +|...-
T Consensus 174 v~~~VITVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATK-DAGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 457999999999999998775 46677899999999999999998875 4789999999999998664 554432
Q ss_pred c-ceEEecccHHHHHHHHHHh
Q psy9135 187 C-AWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 ~-~~~~~~iGG~~lt~~L~~l 206 (1107)
. .....++||.++|+.|.+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~ 273 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNY 273 (663)
T ss_pred EecccCCCcCHHHHHHHHHHH
Confidence 2 2234689999999999887
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-06 Score=106.27 Aligned_cols=91 Identities=20% Similarity=0.156 Sum_probs=73.0
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecCEec---c
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPV---L 186 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG~vl---~ 186 (1107)
..++++.|......+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+.+|+|+|+++++|+-+.-+... .
T Consensus 136 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vl 214 (621)
T CHL00094 136 TQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVL 214 (621)
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEE
Confidence 5688899999999999887665 577899999999999999998764 468999999999999877544211 1
Q ss_pred cceEEecccHHHHHHHHHHh
Q psy9135 187 CAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 ~~~~~~~iGG~~lt~~L~~l 206 (1107)
......++||+++|+.|.+.
T Consensus 215 a~~gd~~lGG~d~D~~l~~~ 234 (621)
T CHL00094 215 STSGDTHLGGDDFDKKIVNW 234 (621)
T ss_pred EEecCCCcChHHHHHHHHHH
Confidence 12234689999999999987
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-06 Score=106.92 Aligned_cols=92 Identities=20% Similarity=0.122 Sum_probs=72.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecC--Ee-c
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEG--VP-V 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG--~v-l 185 (1107)
-..+++|.|.+.+..+|+.+. -..+.-|++-+.++++|.+|++++|. .+.+|+|+|++++.|+-+.-+ .. +
T Consensus 133 v~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v 211 (627)
T PRK00290 133 VTEAVITVPAYFNDAQRQATK-DAGKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEV 211 (627)
T ss_pred CceEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEE
Confidence 356899999999999998775 55577899999999999999888753 579999999999998765443 21 1
Q ss_pred ccceEEecccHHHHHHHHHHh
Q psy9135 186 LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 ~~~~~~~~iGG~~lt~~L~~l 206 (1107)
.......++||.++++.|.+.
T Consensus 212 la~~gd~~lGG~d~D~~l~~~ 232 (627)
T PRK00290 212 LSTNGDTHLGGDDFDQRIIDY 232 (627)
T ss_pred EEecCCCCcChHHHHHHHHHH
Confidence 112223679999999999887
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-06 Score=106.12 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=71.4
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------ceEEEEEeCCCceEEEEee--cCEec-
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVPV- 185 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------~tglVVDiG~~~T~V~PV~--dG~vl- 185 (1107)
..++++.|...+..+|+.+.+ ..+.-|++-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..-
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 568999999999999998765 5667899999999999999887653 5689999999999987654 33221
Q ss_pred ccceEEecccHHHHHHHHHHh
Q psy9135 186 LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 ~~~~~~~~iGG~~lt~~L~~l 206 (1107)
.......++||.++|+.|.+.
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~ 230 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDW 230 (595)
T ss_pred EEecCCcccCchhHHHHHHHH
Confidence 111223579999999999888
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-06 Score=104.79 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEec-
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV- 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl- 185 (1107)
-..+++|.|...+..+|+.+.+. .+..|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..-
T Consensus 129 v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~v 207 (599)
T TIGR01991 129 LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEV 207 (599)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEE
Confidence 35799999999999999987655 788999999999999999887753 5689999999999988664 44321
Q ss_pred ccceEEecccHHHHHHHHHHh
Q psy9135 186 LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 ~~~~~~~~iGG~~lt~~L~~l 206 (1107)
........+||.++|+.|.+.
T Consensus 208 la~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 208 LATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred EEEcCCCCCCHHHHHHHHHHH
Confidence 111223589999999999998
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-06 Score=106.78 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEecc
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPVL 186 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl~ 186 (1107)
-..+++|.|.+.+..+|+.+-+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..--
T Consensus 141 v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V 219 (595)
T PRK01433 141 ITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQV 219 (595)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEE
Confidence 35799999999999998877654 778899999999999999998864 3579999999999987663 553221
Q ss_pred -cceEEecccHHHHHHHHHHh
Q psy9135 187 -CAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 -~~~~~~~iGG~~lt~~L~~l 206 (1107)
...-...+||.+++..|.+.
T Consensus 220 ~at~gd~~lGG~d~D~~l~~~ 240 (595)
T PRK01433 220 IATNGDNMLGGNDIDVVITQY 240 (595)
T ss_pred EEEcCCcccChHHHHHHHHHH
Confidence 11123479999999999988
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-06 Score=103.80 Aligned_cols=110 Identities=20% Similarity=0.191 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHh---hccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEE
Q psy9135 94 GLLIEFIRKIFF---KYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGL 165 (1107)
Q Consensus 94 ~~le~i~~~~~~---~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tgl 165 (1107)
+....+++++.. +.++. .-..+++|.|.+.+..+|+.+.+ ..+.-|+.-+.++++|.+|++++|. .+-+
T Consensus 151 ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vl 227 (673)
T PLN03184 151 EISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASLAYGFEKKSNETIL 227 (673)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEE
Confidence 444455555542 22332 23579999999999999987654 6678899999999999999988764 4789
Q ss_pred EEEeCCCceEEEEeecC--Ee-cccceEEecccHHHHHHHHHHh
Q psy9135 166 VLDIGYSEATLLPVYEG--VP-VLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 166 VVDiG~~~T~V~PV~dG--~v-l~~~~~~~~iGG~~lt~~L~~l 206 (1107)
|+|+|+++++|+-+.-+ .. +....-..++||.++|+.|.+.
T Consensus 228 V~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~ 271 (673)
T PLN03184 228 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDW 271 (673)
T ss_pred EEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHH
Confidence 99999999998766433 21 1111223689999999999988
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-06 Score=104.00 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=72.6
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEec-
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV- 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl- 185 (1107)
-..+++|.|.+.+..+|+.+. -..+..|++-+.++++|.+|++++|. .+-+|+|+|+++++|+.+. +|..-
T Consensus 149 v~~~VITVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~ev 227 (616)
T PRK05183 149 LDGAVITVPAYFDDAQRQATK-DAARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEV 227 (616)
T ss_pred cceEEEEECCCCCHHHHHHHH-HHHHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEE
Confidence 357999999999999998774 55788999999999999999887653 4579999999999987664 34321
Q ss_pred ccceEEecccHHHHHHHHHHh
Q psy9135 186 LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 ~~~~~~~~iGG~~lt~~L~~l 206 (1107)
........+||.++++.|.+.
T Consensus 228 lat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 228 LATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred EEecCCCCcCHHHHHHHHHHH
Confidence 112223579999999999988
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.9e-06 Score=101.79 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=72.0
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------ceEEEEEeCCCceEEEEee--cCEec
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVPV 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------~tglVVDiG~~~T~V~PV~--dG~vl 185 (1107)
-..+++|.|.+.+..+|+.+.+ ..+.-|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..-
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 3569999999999999998765 5677899999999999999988764 3589999999999987543 33221
Q ss_pred -ccceEEecccHHHHHHHHHHh
Q psy9135 186 -LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 -~~~~~~~~iGG~~lt~~L~~l 206 (1107)
........+||.++++.|.+.
T Consensus 212 V~at~gd~~LGG~dfD~~l~~~ 233 (653)
T PRK13411 212 VKATAGNNHLGGDDFDNCIVDW 233 (653)
T ss_pred EEEEecCCCcCHHHHHHHHHHH
Confidence 111223579999999999887
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-06 Score=99.99 Aligned_cols=97 Identities=18% Similarity=0.115 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHH
Q psy9135 126 PTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVE 200 (1107)
Q Consensus 126 ~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt 200 (1107)
++...+.+.+ +++..|+.-+.+..+|+++++++.. ...+|||+|+++|+++.+.+|.+.. .+.+++||+++|
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHH
Confidence 4555555554 5678899999999999999887642 3579999999999999999998765 477999999999
Q ss_pred HHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 201 AHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 201 ~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+.+.+. + ..+...+|++|.+++...
T Consensus 233 ~~i~~~--------------l-----------------~~~~~~AE~lK~~~~~~~ 257 (371)
T TIGR01174 233 KDIAKA--------------L-----------------RTPLEEAERIKIKYGCAS 257 (371)
T ss_pred HHHHHH--------------h-----------------CCCHHHHHHHHHHeeEec
Confidence 988765 2 135788999999998764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.2e-06 Score=101.85 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHH
Q psy9135 127 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEA 201 (1107)
Q Consensus 127 ~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~ 201 (1107)
+...+.+.+ .++.-|+.-..++.+|+++++++.. ...+|||+|+++|+++-+.+|.+.. ...+++||+++|+
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~--~~~i~~GG~~it~ 241 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRH--TKVIPYAGNVVTS 241 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEE--EeeeechHHHHHH
Confidence 344445554 6688999999999999999998643 3589999999999999999998874 4889999999999
Q ss_pred HHHHh
Q psy9135 202 HIRRG 206 (1107)
Q Consensus 202 ~L~~l 206 (1107)
.+...
T Consensus 242 dIa~~ 246 (420)
T PRK09472 242 DIAYA 246 (420)
T ss_pred HHHHH
Confidence 88766
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=100.30 Aligned_cols=91 Identities=16% Similarity=0.107 Sum_probs=72.2
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEec-c
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV-L 186 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl-~ 186 (1107)
..+++|.|.+.+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..- .
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDA-GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 4699999999999999876554 578899999999999999988764 5689999999999987654 44321 1
Q ss_pred cceEEecccHHHHHHHHHHh
Q psy9135 187 CAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 ~~~~~~~iGG~~lt~~L~~l 206 (1107)
.+....++||.++++.|.+.
T Consensus 215 at~gd~~lGG~dfD~~l~~~ 234 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDW 234 (668)
T ss_pred EeecCCCCChhHHHHHHHHH
Confidence 12223579999999999887
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-05 Score=99.15 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=72.9
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-------ceEEEEEeCCCceEEEEee--cCEe
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-------NTGLVLDIGYSEATLLPVY--EGVP 184 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-------~tglVVDiG~~~T~V~PV~--dG~v 184 (1107)
-..+++|.|.+.+..+|+.+. -..+..|+.-+.++++|.+|++++|. .+.+|+|+|+++++|+-+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~-~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATK-DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHH-HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 357999999999999888766 46778899999999999999987753 4789999999999987654 5543
Q ss_pred cccc-eEEecccHHHHHHHHHHh
Q psy9135 185 VLCA-WKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l~~~-~~~~~iGG~~lt~~L~~l 206 (1107)
-..+ .-..++||+++|..|.+.
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~ 241 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEF 241 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHH
Confidence 2221 223579999999999988
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.9e-06 Score=100.82 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=73.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEecc
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPVL 186 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl~ 186 (1107)
-..+++|.|.+....+|+.+. -..+.-|+.-+.++++|.+|++++|. .+-+|+|+|+++++|+-+. +|..--
T Consensus 160 v~~aVITVPayF~~~qR~at~-~Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V 238 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATK-DAGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV 238 (657)
T ss_pred cceEEEEECCCCChHHHHHHH-HHHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 356899999999999888765 46677899999999999999988764 4689999999999988765 665432
Q ss_pred cc-eEEecccHHHHHHHHHHh
Q psy9135 187 CA-WKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 ~~-~~~~~iGG~~lt~~L~~l 206 (1107)
.+ .-..++||.++|+.|.+.
T Consensus 239 ~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 239 KATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred EEecCCCCCCchhHHHHHHHH
Confidence 22 234689999999999887
|
|
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5e-06 Score=91.13 Aligned_cols=246 Identities=15% Similarity=0.117 Sum_probs=164.2
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc----------ccee------------ecCCHHhhHHHHHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL----------RNLY------------EYKDADDLYGLLIEFI 794 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~----------~~~~------------~~~~~~~~~d~le~i~ 794 (1107)
..|=||+|+.+|++=.-|. .=-...||+++....++. |..+ -.++.+.+++..+.++
T Consensus 7 ~diGIDLGTanTlV~~k~k-gIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~~te~ml 85 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGK-GIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFEVTELML 85 (342)
T ss_pred ccceeeecccceEEEEcCc-eEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEEeecCCcEeecHHHHHHHH
Confidence 4789999999999854432 111123666665442111 1100 1347778899999999
Q ss_pred HHHHHhccccC--CCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC----ce-EEEEEcCCCc
Q psy9135 795 RKIFFKYFVTS--PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV----NT-GLVLDIGYSE 867 (1107)
Q Consensus 795 ~~~~~~~L~~~--~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~----~t-glVVDiG~~~ 867 (1107)
+|...+..+-. +..-+++++.|.-.+...|+.+-|-+-. -+...+++++.|.+|+.++|. .+ ..|||||.+.
T Consensus 86 ~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~-aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGT 164 (342)
T COG1077 86 KYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAES-AGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGT 164 (342)
T ss_pred HHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHh-ccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCc
Confidence 98886544322 2444589999999999999999888854 688899999999999999985 34 8999999999
Q ss_pred eEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHH
Q psy9135 868 ATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSA 947 (1107)
Q Consensus 868 T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~ 947 (1107)
|.|.-+..|-.... +...+| |+.+++-+-++++++. .+ -+-+..+++||.+.+++......+
T Consensus 165 TevaVISlggiv~~--~Sirv~-GD~~De~Ii~yvr~~~---------nl------~IGe~taE~iK~eiG~a~~~~~~~ 226 (342)
T COG1077 165 TEVAVISLGGIVSS--SSVRVG-GDKMDEAIIVYVRKKY---------NL------LIGERTAEKIKIEIGSAYPEEEDE 226 (342)
T ss_pred eeEEEEEecCEEEE--eeEEEe-cchhhHHHHHHHHHHh---------Ce------eecHHHHHHHHHHhcccccccCCc
Confidence 99988877766633 456788 9999999999998763 11 233457999999999988653221
Q ss_pred HHHhcCCCCCCCCceEEeCCCCCEEEecccc-cccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC
Q psy9135 948 EIAAKNPDHKYPSGFMYPLKNGKKIPVSGHI-RETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET 1016 (1107)
Q Consensus 948 ~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~e-rf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L 1016 (1107)
...-.-. -.+...-+| .++.+.++| +...-|.+ ..|.++|...+.+|| .++-.+.
T Consensus 227 ~~~~eV~----Grdl~~GlP--k~i~i~s~ev~eal~~~v-------~~Iveair~~Le~tp-PeL~~DI 282 (342)
T COG1077 227 ELEMEVR----GRDLVTGLP--KTITINSEEIAEALEEPL-------NGIVEAIRLVLEKTP-PELAADI 282 (342)
T ss_pred cceeeEE----eeecccCCC--eeEEEcHHHHHHHHHHHH-------HHHHHHHHHHHhhCC-chhcccH
Confidence 1000000 001111223 234443222 22333333 368899999999999 7776655
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.2e-06 Score=90.32 Aligned_cols=148 Identities=12% Similarity=0.055 Sum_probs=108.6
Q ss_pred EecCcceEEEeccC-CCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhc-cccCCCCceEEEEeccC
Q psy9135 741 LDIGSKYTKYGIFG-SFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKY-FVTSPKDKRIVVVESVL 818 (1107)
Q Consensus 741 iD~Gs~~iK~G~ag-e~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~-L~~~~~~~~vll~e~~~ 818 (1107)
||+||.++|+=-.. ...+-.+.+. |. --..++.+.|.+..+.+++++.... -....+-..++++.|..
T Consensus 2 ~dig~~~ik~v~~~~~~~~~~~~~~----~~------~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~ 71 (239)
T TIGR02529 2 VDLGTANIVIVVLDEDGQPVAGVMQ----FA------DVVRDGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPG 71 (239)
T ss_pred CCcccceEEEEEEecCCCEEEEEec----cc------ccccCCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCC
Confidence 69999999975432 2222111111 10 0133578888999999999888421 11222345799999998
Q ss_pred CchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHH
Q psy9135 819 TPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHI 898 (1107)
Q Consensus 819 ~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L 898 (1107)
.+..+|+.+.+.+ +.-++.-+.+..+++++..+++....+|||+|++.|.++-+.+|.++. .+..++| |+++|+.+
T Consensus 72 ~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~~~~~~~~vvDiGggtt~i~i~~~G~i~~--~~~~~~G-G~~it~~I 147 (239)
T TIGR02529 72 TIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAVLQIKNGAVVDVGGGTTGISILKKGKVIY--SADEPTG-GTHMSLVL 147 (239)
T ss_pred CCcccHHHHHHHH-HHcCCceEEEeehHHHHHHHhcCCCcEEEEeCCCcEEEEEEECCeEEE--EEeeecc-hHHHHHHH
Confidence 8888888777655 557999999999999999988877789999999999999889998774 4677899 99999887
Q ss_pred HHHH
Q psy9135 899 RSLL 902 (1107)
Q Consensus 899 ~~lL 902 (1107)
.+.+
T Consensus 148 a~~~ 151 (239)
T TIGR02529 148 AGAY 151 (239)
T ss_pred HHHh
Confidence 6554
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-05 Score=99.59 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=68.4
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------ceEEEEEeCCCceEEEEee--cCEecc
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVPVL 186 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------~tglVVDiG~~~T~V~PV~--dG~vl~ 186 (1107)
..++++.|..++..+|+.+. -..+.-|++-+.++++|.+|+++++. .+-+|+|+|++++.|+-+. +|..-.
T Consensus 136 ~~~vitVPa~~~~~qr~~~~-~Aa~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALR-DAAELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHH-HHHHHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhccc-ccccccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46999999999999988666 45567899999999999998876642 5889999999999887664 454322
Q ss_pred -cceEEecccHHHHHHHHHHh
Q psy9135 187 -CAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 187 -~~~~~~~iGG~~lt~~L~~l 206 (1107)
.......+||+++++.|.+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~ 235 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEY 235 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHH
T ss_pred cccccccccccceecceeecc
Confidence 22344789999999999998
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-05 Score=90.72 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=67.6
Q ss_pred CCeEEEEecCCCc-----HHHHHHH--HHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeec
Q psy9135 114 DKRIVVVESVLTP-----TVWRNTL--AKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYE 181 (1107)
Q Consensus 114 ~~~vllte~~~~~-----~~~re~l--~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~d 181 (1107)
-..+|++-|.... ..+|+.. ..-..+.-|++.+.++++|.+|++++|. .+-+|+|+|+++++++-|-=
T Consensus 149 v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~ 228 (450)
T PRK11678 149 ITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLM 228 (450)
T ss_pred CCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEe
Confidence 3568999998765 5555432 4567788999999999999999998873 57899999999998876642
Q ss_pred C-----------EecccceEEecccHHHHHHHHHH
Q psy9135 182 G-----------VPVLCAWKDLSLGGQSVEAHIRR 205 (1107)
Q Consensus 182 G-----------~vl~~~~~~~~iGG~~lt~~L~~ 205 (1107)
+ .++.++- ..+||+++|..|..
T Consensus 229 ~~~~~~~~~r~~~vla~~G--~~lGG~DfD~~L~~ 261 (450)
T PRK11678 229 GPSWRGRADRSASLLGHSG--QRIGGNDLDIALAF 261 (450)
T ss_pred cCcccccCCcceeEEecCC--CCCChHHHHHHHHH
Confidence 1 1222221 36999999999963
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00029 Score=86.66 Aligned_cols=93 Identities=20% Similarity=0.163 Sum_probs=75.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeec--CE-e
Q psy9135 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYE--GV-P 184 (1107)
Q Consensus 113 ~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~d--G~-v 184 (1107)
.-..++++.|.+....+|+.+ .-..+..|++-+.++++|.+|+|++|. .+-+|+|+|++++.|+-|-= |. -
T Consensus 119 ~v~~~VItVPayF~d~qR~at-~~A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~e 197 (579)
T COG0443 119 KVTDAVITVPAYFNDAQRQAT-KDAARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFE 197 (579)
T ss_pred CcceEEEEeCCCCCHHHHHHH-HHHHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEE
Confidence 456799999999999987754 466778899999999999999999875 57999999999999886654 32 1
Q ss_pred cccceEEecccHHHHHHHHHHh
Q psy9135 185 VLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+........+||++++..|...
T Consensus 198 v~at~gd~~LGGddfD~~l~~~ 219 (579)
T COG0443 198 VLATGGDNHLGGDDFDNALIDY 219 (579)
T ss_pred EeecCCCcccCchhHHHHHHHH
Confidence 2233445689999999999888
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.5e-05 Score=83.28 Aligned_cols=153 Identities=11% Similarity=0.069 Sum_probs=106.9
Q ss_pred ccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHH---hccccCCCCceE
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFF---KYFVTSPKDKRI 811 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~---~~L~~~~~~~~v 811 (1107)
.+-.++||+||..+|+=.+ +..+. .+ .....++. . ...+.+.+++.....++++.. +.++.+ -..+
T Consensus 23 ~~~~~~iDiGSssi~~vv~-~~~~~-~~-~~~~~~~~-----~-vr~G~i~di~~a~~~i~~~~~~ae~~~g~~--i~~v 91 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVL-DEDGQ-PV-AGALEWAD-----V-VRDGIVVDFIGAVTIVRRLKATLEEKLGRE--LTHA 91 (267)
T ss_pred CCEEEEEEccCceEEEEEE-cCCCC-EE-EEEecccc-----c-cCCCEEeeHHHHHHHHHHHHHHHHHHhCCC--cCeE
Confidence 3456899999999997654 33343 11 11111111 1 123445667777777776663 233443 3456
Q ss_pred EEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccch
Q psy9135 812 VVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGG 891 (1107)
Q Consensus 812 ll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G 891 (1107)
.++.|...+..+|..+. -..+.-++.-..++.++.++..+.+...++|||+|.+.|.++-+.+|.+... ...++| |
T Consensus 92 ~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt~i~v~~~g~~~~~--~~~~~G-G 167 (267)
T PRK15080 92 ATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTTGISILKDGKVVYS--ADEPTG-G 167 (267)
T ss_pred EEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcEEEEEEECCeEEEE--ecccCc-h
Confidence 77888877666777666 4556788888889999998888877777899999999999998899987643 567999 9
Q ss_pred HHHHHHHHHHH
Q psy9135 892 QSVESHIRSLL 902 (1107)
Q Consensus 892 ~~lt~~L~~lL 902 (1107)
+++|+.+.+.+
T Consensus 168 ~~it~~Ia~~l 178 (267)
T PRK15080 168 THMSLVLAGAY 178 (267)
T ss_pred HHHHHHHHHHh
Confidence 99999887765
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00044 Score=86.67 Aligned_cols=95 Identities=21% Similarity=0.184 Sum_probs=73.1
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCE--e-ec
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGV--P-VL 880 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~--~-l~ 880 (1107)
..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+--+. . +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 46899999999999999886554 56788889999999999888753 5699999999999887664431 1 11
Q ss_pred cceEEEeccchHHHHHHHHHHHHhh
Q psy9135 881 CAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 881 ~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
......++| |.++++.|.+.+.++
T Consensus 213 a~~gd~~lG-G~d~D~~l~~~~~~~ 236 (627)
T PRK00290 213 STNGDTHLG-GDDFDQRIIDYLADE 236 (627)
T ss_pred EecCCCCcC-hHHHHHHHHHHHHHH
Confidence 112235789 999999999888654
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00055 Score=80.00 Aligned_cols=87 Identities=18% Similarity=0.114 Sum_probs=72.3
Q ss_pred HHHhhcCcceEEEecchhhhhccC-----CCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhh
Q psy9135 136 VLFKHYEVLSLLYVPSHLVSLCTL-----GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVE 210 (1107)
Q Consensus 136 ilFE~~~vpsv~~~~~~lls~y~~-----g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~ 210 (1107)
-.+|+-+..=-.+.-++++|..++ -.-.+++||+|+.+|+|+-..+|.+... ..+|+||+++|+-+...
T Consensus 172 k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~---- 245 (418)
T COG0849 172 KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKG---- 245 (418)
T ss_pred HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHH----
Confidence 456788888888888888888775 2367999999999999999999999966 78999999999999888
Q ss_pred hhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceee
Q psy9135 211 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 255 (1107)
Q Consensus 211 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v 255 (1107)
|+ .+...+|+||.++...
T Consensus 246 ----------l~-----------------t~~~~AE~iK~~~g~a 263 (418)
T COG0849 246 ----------LK-----------------TPFEEAERIKIKYGSA 263 (418)
T ss_pred ----------hC-----------------CCHHHHHHHHHHcCcc
Confidence 21 3578899999887533
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00053 Score=85.50 Aligned_cols=95 Identities=22% Similarity=0.208 Sum_probs=72.3
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------ceEEEEEcCCCceEEEEEEc--CEe-e
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVYE--GVP-V 879 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------~tglVVDiG~~~T~v~PV~d--G~~-l 879 (1107)
..++|+.|...+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|++++.++-+.- |.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 4689999999999999988774 455788889999999999887653 46899999999998876643 211 1
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
..+....++| |.++|+.|.+.+.++
T Consensus 210 ~~~~gd~~lG-G~d~D~~l~~~~~~~ 234 (595)
T TIGR02350 210 LSTAGDTHLG-GDDFDQRIIDWLADE 234 (595)
T ss_pred EEecCCcccC-chhHHHHHHHHHHHH
Confidence 1112234788 999999999888654
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00065 Score=84.45 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=74.7
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC-----CceEEEEEcCCCceEEEEEE--cCEe-e
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG-----VNTGLVLDIGYSEATLLPVY--EGVP-V 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g-----~~tglVVDiG~~~T~v~PV~--dG~~-l 879 (1107)
-..++|+.|...+..+|+.+.+. .+.-|+.-+.++++|.+|++++| ..+-+|+|+|++++.|+-+- +|.. +
T Consensus 129 v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~v 207 (599)
T TIGR01991 129 LVGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEV 207 (599)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEE
Confidence 35799999999999999988776 47789999999999999988775 34679999999999987653 3321 1
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
........+| |.++|+.|.+.+.++
T Consensus 208 la~~gd~~lG-G~d~D~~l~~~l~~~ 232 (599)
T TIGR01991 208 LATGGDSALG-GDDFDHALAKWILKQ 232 (599)
T ss_pred EEEcCCCCCC-HHHHHHHHHHHHHHh
Confidence 1111224788 999999999999765
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0005 Score=79.87 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=59.6
Q ss_pred cHHHHHHHHHHHHhhcCcceEEEecchhhh--hcc--------C-CCc-eEEEEEeCCCceEEEEeecCEecccceEEec
Q psy9135 126 PTVWRNTLAKVLFKHYEVLSLLYVPSHLVS--LCT--------L-GVN-TGLVLDIGYSEATLLPVYEGVPVLCAWKDLS 193 (1107)
Q Consensus 126 ~~~~re~l~eilFE~~~vpsv~~~~~~lls--~y~--------~-g~~-tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~ 193 (1107)
++...+.+.++ |+..|+.-..+..++++. ++. . ... +.++||+|+.+|+++-+.+|.+... +.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~--r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFT--REVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEE--EEee
Confidence 67777777765 677777766666666554 331 1 122 4899999999999999999999865 8899
Q ss_pred ccHHHHHHHHHHh
Q psy9135 194 LGGQSVEAHIRRG 206 (1107)
Q Consensus 194 iGG~~lt~~L~~l 206 (1107)
+||.++++.+.+.
T Consensus 218 ~G~~~i~~~i~~~ 230 (348)
T TIGR01175 218 FGTRQLTSELSRA 230 (348)
T ss_pred chHHHHHHHHHHH
Confidence 9999999988776
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=83.34 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=72.7
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------ceEEEEEcCCCceEEEEEE--cCEe-
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVP- 878 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------~tglVVDiG~~~T~v~PV~--dG~~- 878 (1107)
-..++|+.|...+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+- +|..
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKDA-GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 35699999999999999988765 456788889999999999988764 3479999999999887543 2221
Q ss_pred eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 879 VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
+....-...+| |.++++.|.+.+.++
T Consensus 212 V~at~gd~~LG-G~dfD~~l~~~l~~~ 237 (653)
T PRK13411 212 VKATAGNNHLG-GDDFDNCIVDWLVEN 237 (653)
T ss_pred EEEEecCCCcC-HHHHHHHHHHHHHHH
Confidence 11112224688 999999998888654
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=81.91 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=73.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEee-c
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV-L 880 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~l-~ 880 (1107)
..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+. +|..- .
T Consensus 161 ~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 46899999999999998876644 56788889999999999988764 3689999999999887765 55332 2
Q ss_pred cceEEEeccchHHHHHHHHHHHHhh
Q psy9135 881 CAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 881 ~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
.+.-..++| |.++++.|.+.+.++
T Consensus 240 at~Gd~~LG-G~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 240 ATNGDTHLG-GEDFDLALSDYILEE 263 (657)
T ss_pred EecCCCCCC-chhHHHHHHHHHHHH
Confidence 122235789 999999998887654
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0014 Score=75.98 Aligned_cols=66 Identities=18% Similarity=0.066 Sum_probs=56.2
Q ss_pred cCcceEEEecchhhhhccCCC-------------ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 141 YEVLSLLYVPSHLVSLCTLGV-------------NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 141 ~~vpsv~~~~~~lls~y~~g~-------------~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
..+..+.+.++++.++|.... ...+|||||+.+|.++-+.++.+.......++.|..++.+.+.+.
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~ 229 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASH 229 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHH
Confidence 456778899999988875421 356999999999999999999999887788999999999999888
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0022 Score=79.46 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=74.0
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEee-
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV- 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~l- 879 (1107)
-..++|+.|...+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+- +|..-
T Consensus 141 v~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V 219 (595)
T PRK01433 141 ITKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQV 219 (595)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEE
Confidence 35799999999999999888776 466788889999999999998864 3468999999999887653 44221
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
...--...+| |.++++.|.+.+.++
T Consensus 220 ~at~gd~~lG-G~d~D~~l~~~~~~~ 244 (595)
T PRK01433 220 IATNGDNMLG-GNDIDVVITQYLCNK 244 (595)
T ss_pred EEEcCCcccC-hHHHHHHHHHHHHHh
Confidence 1111223688 999999999998765
|
|
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0024 Score=79.62 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=74.0
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEe-e
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVP-V 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~-l 879 (1107)
-..++|+.|...+..+|+.+.+. .+..|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+- +|.. +
T Consensus 149 v~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~ev 227 (616)
T PRK05183 149 LDGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEV 227 (616)
T ss_pred cceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEE
Confidence 35789999999999999888655 567899999999999999887653 3578999999999987664 3321 1
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
....-...+| |.++++.|.+.+.++
T Consensus 228 lat~gd~~lG-G~d~D~~l~~~~~~~ 252 (616)
T PRK05183 228 LATGGDSALG-GDDFDHLLADWILEQ 252 (616)
T ss_pred EEecCCCCcC-HHHHHHHHHHHHHHH
Confidence 1112224688 999999999998765
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0027 Score=79.82 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=73.6
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-------ceEEEEEcCCCceEEEEEE--cCEe
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-------NTGLVLDIGYSEATLLPVY--EGVP 878 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-------~tglVVDiG~~~T~v~PV~--dG~~ 878 (1107)
-..++|+.|.+.+..+|+.+.+. .+.-|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+- +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDA-GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHH-HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 35699999999999999887764 466789999999999999887753 4689999999999887654 4432
Q ss_pred e-ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 879 V-LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l-~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
- ....-..++| |+++++.|.+.+.++
T Consensus 219 ~v~a~~gd~~lG-G~d~D~~l~~~~~~~ 245 (653)
T PTZ00009 219 EVKATAGDTHLG-GEDFDNRLVEFCVQD 245 (653)
T ss_pred EEEEecCCCCCC-hHHHHHHHHHHHHHH
Confidence 1 1111224789 999999999888654
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0084 Score=70.38 Aligned_cols=98 Identities=18% Similarity=0.094 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHH
Q psy9135 820 PTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSV 894 (1107)
Q Consensus 820 ~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~l 894 (1107)
++...+.+.+ +++..|+.-..+..+|+++++++.. ...+|||+|++.|+++.+.+|.+.. .+.+++| |+++
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~G-G~~i 231 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY--TKVIPIG-GNHI 231 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE--Eeeecch-HHHH
Confidence 4445555554 4467788888889999998887642 2479999999999999999998664 5778999 9999
Q ss_pred HHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeecc
Q psy9135 895 ESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT 942 (1107)
Q Consensus 895 t~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~ 942 (1107)
|+.+.+.+. ++...++++|.+++....
T Consensus 232 t~~i~~~l~---------------------~~~~~AE~lK~~~~~~~~ 258 (371)
T TIGR01174 232 TKDIAKALR---------------------TPLEEAERIKIKYGCASI 258 (371)
T ss_pred HHHHHHHhC---------------------CCHHHHHHHHHHeeEecc
Confidence 998876542 234479999999987653
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0026 Score=79.58 Aligned_cols=95 Identities=22% Similarity=0.210 Sum_probs=74.5
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCEee---c
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPV---L 880 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~~l---~ 880 (1107)
..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+..+... .
T Consensus 136 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vl 214 (621)
T CHL00094 136 TQAVITVPAYFNDSQRQATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVL 214 (621)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEE
Confidence 46889999999999998887765 56788889999999999998764 367999999999999877544211 1
Q ss_pred cceEEEeccchHHHHHHHHHHHHhh
Q psy9135 881 CAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 881 ~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
......++| |.++|+.|.+.+.++
T Consensus 215 a~~gd~~lG-G~d~D~~l~~~~~~~ 238 (621)
T CHL00094 215 STSGDTHLG-GDDFDKKIVNWLIKE 238 (621)
T ss_pred EEecCCCcC-hHHHHHHHHHHHHHH
Confidence 122235799 999999999888654
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.015 Score=64.45 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=53.9
Q ss_pred HHHHHhhcCcceEEEecchhhhhcc-------CC-Cce---EEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHH
Q psy9135 134 AKVLFKHYEVLSLLYVPSHLVSLCT-------LG-VNT---GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAH 202 (1107)
Q Consensus 134 ~eilFE~~~vpsv~~~~~~lls~y~-------~g-~~t---glVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~ 202 (1107)
-.-.||.-|.....+-.++.+..-+ .| .+. .+|+|||+..|.++-+++|+++.. +..++||+++++.
T Consensus 154 ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~ 231 (354)
T COG4972 154 RIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQE 231 (354)
T ss_pred HHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHH
Confidence 3346777777777766555443322 12 233 459999999999999999999987 8899999999999
Q ss_pred HHHh
Q psy9135 203 IRRG 206 (1107)
Q Consensus 203 L~~l 206 (1107)
+.+.
T Consensus 232 i~r~ 235 (354)
T COG4972 232 IQRA 235 (354)
T ss_pred HHHH
Confidence 9888
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0018 Score=75.05 Aligned_cols=108 Identities=21% Similarity=0.298 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhccccCCC-----------------CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecc--hh
Q psy9135 93 YGLLIEFIRKIFFKYFVTSPK-----------------DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPS--HL 153 (1107)
Q Consensus 93 ~~~le~i~~~~~~~~L~~~~~-----------------~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~--~l 153 (1107)
.+.++..+++=..+++..+.. ...|+++-. ++..-+... -+|+..|..-..+-.+ ++
T Consensus 87 ~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~-~~~~~aGL~~~~vDv~~~Al 162 (340)
T PF11104_consen 87 EKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYV-ELFEEAGLKPVAVDVEAFAL 162 (340)
T ss_dssp HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHH-HHHHHTT-EEEEEEEHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHH-HHHHHcCCceEEEeehHHHH
Confidence 355666666665555543322 234555443 444444444 3677788776555444 33
Q ss_pred hhhccC---------CCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 154 VSLCTL---------GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 154 ls~y~~---------g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+-+|.. ...+-++||+|++.|+++-+.+|.++.. +.+++||+++++-+.+.
T Consensus 163 ~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~ 222 (340)
T PF11104_consen 163 ARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARE 222 (340)
T ss_dssp GGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHh
Confidence 344432 1235699999999999999999999965 78999999999999887
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.006 Score=76.80 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=75.6
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEee-
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV- 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~l- 879 (1107)
-..++|+.|...+..+|+.+.+.. +.-|++-+.++++|.+|++++|. .+-+|+|+|++++.|+-+. +|..-
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 457999999999999999887644 56789999999999999998874 3689999999999998654 45332
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
....-..++| |.++|+.|.+.+.++
T Consensus 253 ~a~~gd~~LG-G~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 253 KATNGNTSLG-GEDFDQRILNYLIAE 277 (663)
T ss_pred EecccCCCcC-HHHHHHHHHHHHHHH
Confidence 1122235789 999999999888764
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0069 Score=76.12 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=73.6
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEE--cCEe-ec
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVP-VL 880 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~--dG~~-l~ 880 (1107)
..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|++++.|+-+. +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 46999999999999998877665 66788889999999999988764 4689999999999887654 3321 11
Q ss_pred cceEEEeccchHHHHHHHHHHHHhh
Q psy9135 881 CAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 881 ~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
.+.-..++| |.++++.|.+.+.++
T Consensus 215 at~gd~~lG-G~dfD~~l~~~l~~~ 238 (668)
T PRK13410 215 ATSGDTQLG-GNDFDKRIVDWLAEQ 238 (668)
T ss_pred EeecCCCCC-hhHHHHHHHHHHHHH
Confidence 122234689 999999998887654
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.005 Score=77.53 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=74.1
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCEe---e
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVP---V 879 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~~---l 879 (1107)
-..++|+.|...+..+|+.+.+.. +.-|+.-+.++++|.+|++++|. .+-+|+|+|.+++.|+-+.-+.. +
T Consensus 172 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eV 250 (673)
T PLN03184 172 VTKAVITVPAYFNDSQRTATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEV 250 (673)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEE
Confidence 357999999999999998877644 66789999999999999988764 36799999999999876643311 1
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
..+.-..++| |.++++.|.+.+.++
T Consensus 251 la~~gd~~LG-G~dfD~~L~~~~~~~ 275 (673)
T PLN03184 251 LSTSGDTHLG-GDDFDKRIVDWLASN 275 (673)
T ss_pred EEecCCCccC-HHHHHHHHHHHHHHH
Confidence 1111235789 999999999888664
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0048 Score=70.86 Aligned_cols=162 Identities=17% Similarity=0.104 Sum_probs=108.1
Q ss_pred EecCcceEEEeccC-CCCc-cEEEecceeccCCCC--------c----------cceeecCCHHh------------hH-
Q psy9135 741 LDIGSKYTKYGIFG-SFQP-KGFIKSQVKDPHTNK--------L----------RNLYEYKDADD------------LY- 787 (1107)
Q Consensus 741 iD~Gs~~iK~G~ag-e~~P-~~i~ps~vg~~~~~~--------~----------~~~~~~~~~~~------------~~- 787 (1107)
||+|-.++|+=+.+ +..+ +.++||.++...... . +.+++|+.+.. +|
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~~~~~~~~~~~~ 81 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADTNRARQLHDEYT 81 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccCccceecccccc
Confidence 79999999977642 2233 456788775431110 0 33445543211 11
Q ss_pred --HHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcc--------cCcceeeecccchhhhccc----
Q psy9135 788 --GLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH--------YEVLSLLYVPSHLVSLCTL---- 853 (1107)
Q Consensus 788 --d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~--------~~vpsv~~~~~~~lalya~---- 853 (1107)
+....++.+++.. .+.+ ....+++--|...-...|+.+.+.+-.. ..+..+.+.||++.|++..
T Consensus 82 ~~~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~ 159 (320)
T TIGR03739 82 ETPEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQH 159 (320)
T ss_pred CCHHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcC
Confidence 3445566666633 2222 1223555566555566788888877543 5788999999999887753
Q ss_pred -----CCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 854 -----GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 854 -----g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
...+.+|||+|+.+|.++.+-++.+..+.....+.| -..+.+.+.+.|.++
T Consensus 160 ~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G-~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 160 GKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGG-MSDIYRLLAAEISKD 215 (320)
T ss_pred CCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhH-HHHHHHHHHHHHHhh
Confidence 334579999999999999888888888777788999 999999999998765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.077 Score=61.54 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=46.6
Q ss_pred CHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhH
Q psy9135 455 NIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGG 534 (1107)
Q Consensus 455 gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Gg 534 (1107)
||..+|.+-+.. -.-.+..+-+.|+++||.++.+|+.+.|++.|. .+++.++ +|++..=+||
T Consensus 336 Gl~~SIa~rv~~-~l~~~~~i~~~VvftGGva~N~gvv~ale~~Lg----------------~~iivPe-~pq~~GAiGA 397 (404)
T TIGR03286 336 AACHSVAEQVYE-QQLQEIDVREPVILVGGTSLIEGLVKALGDLLG----------------IEVVVPE-YSQYIGAVGA 397 (404)
T ss_pred HHHHHHHHHHHH-HHhhcCCCCCcEEEECChhhhHHHHHHHHHHhC----------------CcEEECC-cccHHHHHHH
Confidence 566666555542 001122344569999999999999999999883 1233344 8999999999
Q ss_pred HhhcC
Q psy9135 535 AIFAA 539 (1107)
Q Consensus 535 silas 539 (1107)
+++|+
T Consensus 398 AL~A~ 402 (404)
T TIGR03286 398 ALLAS 402 (404)
T ss_pred HHHhc
Confidence 99985
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=73.06 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=69.7
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------ceEEEEEcCCCceEEEEEE--cCEee-
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVY--EGVPV- 879 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------~tglVVDiG~~~T~v~PV~--dG~~l- 879 (1107)
..++|+.|...+..+|+.+.+.+ +.-|++-+.+++.|.+|+++++. .+-+|+|+|++++.|+-+. +|..-
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46899999999999998887765 45788888899999998876642 4789999999999877664 45322
Q ss_pred ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 880 LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
........+| |+++++.|.+.+.++
T Consensus 215 ~~~~~~~~lG-G~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 215 LATAGDNNLG-GRDFDEALAEYLLEK 239 (602)
T ss_dssp EEEEEETTCS-HHHHHHHHHHHHHHH
T ss_pred cccccccccc-cceecceeecccccc
Confidence 1222335688 999999999999765
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.084 Score=58.31 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=31.5
Q ss_pred EEEEEeCCCceEEEEeecCEecccce-EEecccHHHHHHHHHHh
Q psy9135 164 GLVLDIGYSEATLLPVYEGVPVLCAW-KDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 164 glVVDiG~~~T~V~PV~dG~vl~~~~-~~~~iGG~~lt~~L~~l 206 (1107)
-.|||||.+.|.++-+.+|.+..-.. .+...|+..+.+.+.+.
T Consensus 93 ~~vidiGgqd~k~i~~~~g~~~~~~~n~~ca~Gtg~f~e~~a~~ 136 (248)
T TIGR00241 93 RGVIDIGGQDSKVIKIDDGKVDDFTMNDKCAAGTGRFLEVTARR 136 (248)
T ss_pred CEEEEecCCeeEEEEECCCcEeeeeecCcccccccHHHHHHHHH
Confidence 45999999999999999998762211 34667777666666555
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.011 Score=67.75 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhh--------cCcceEEEecchhhhhccC--------
Q psy9135 96 LIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH--------YEVLSLLYVPSHLVSLCTL-------- 159 (1107)
Q Consensus 96 le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~--------~~vpsv~~~~~~lls~y~~-------- 159 (1107)
...++.+++.. .+.+ ....+++=-|...-...|+.+.+.+-.. ..+..+.+.+|++.|++..
T Consensus 86 ~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~ 163 (320)
T TIGR03739 86 YMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL 163 (320)
T ss_pred HHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc
Confidence 44555666533 2221 1223444455544456788888877543 5788899999999887653
Q ss_pred -CCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 160 -GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 160 -g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
...+.+|||||+.+|.++.+.++.+........+.|-..+.+.+.+.
T Consensus 164 ~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~ 211 (320)
T TIGR03739 164 TGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAE 211 (320)
T ss_pred cCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHH
Confidence 34567999999999999988888888877778899999999988888
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.046 Score=65.51 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred ceEEEEeccCCc-----hHHHHHH--HHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcC
Q psy9135 809 KRIVVVESVLTP-----TVWRNTL--AKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEG 876 (1107)
Q Consensus 809 ~~vll~e~~~~~-----~~~re~l--~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG 876 (1107)
..++|+.|.... ..+|+.. ..-..+.-|++.+.++++|.+|++++|. .+-+|+|+|.+++.++-|-=+
T Consensus 150 ~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~ 229 (450)
T PRK11678 150 TQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMG 229 (450)
T ss_pred CcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEec
Confidence 568999998765 5555432 3445577899999999999999998873 468999999999988766421
Q ss_pred -----------EeeccceEEEeccchHHHHHHHH
Q psy9135 877 -----------VPVLCAWKDLSLGGGQSVESHIR 899 (1107)
Q Consensus 877 -----------~~l~~~~~~~~~G~G~~lt~~L~ 899 (1107)
.++-++- ..+| |+++++.|.
T Consensus 230 ~~~~~~~~r~~~vla~~G--~~lG-G~DfD~~L~ 260 (450)
T PRK11678 230 PSWRGRADRSASLLGHSG--QRIG-GNDLDIALA 260 (450)
T ss_pred CcccccCCcceeEEecCC--CCCC-hHHHHHHHH
Confidence 1222221 3699 999999986
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.1 Score=64.61 Aligned_cols=97 Identities=20% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcC---Ee
Q psy9135 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEG---VP 878 (1107)
Q Consensus 807 ~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG---~~ 878 (1107)
.-..++++.|.+....+|+.+.+.. ...|++-+.+++.|.+|+|++|. .+-+|+|+|.+.+.++=|-=+ +.
T Consensus 119 ~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~e 197 (579)
T COG0443 119 KVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFE 197 (579)
T ss_pred CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEE
Confidence 4567999999999999987766554 55899999999999999999874 478999999999998877543 22
Q ss_pred eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 879 VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
.........+| |++++..|...+..+
T Consensus 198 v~at~gd~~LG-GddfD~~l~~~~~~~ 223 (579)
T COG0443 198 VLATGGDNHLG-GDDFDNALIDYLVME 223 (579)
T ss_pred EeecCCCcccC-chhHHHHHHHHHHHH
Confidence 23344455788 999999999888765
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.52 Score=52.76 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=46.3
Q ss_pred CHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhH
Q psy9135 455 NIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGG 534 (1107)
Q Consensus 455 gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Gg 534 (1107)
||.+.|.+-+... -.|..+-++|+++||.+.-+|+.+.|+++|.. ++.+ .|.+|++..=+||
T Consensus 221 Gl~~sia~rv~~~--~~~~~i~~~v~~~GGva~N~~l~~al~~~Lg~--------------~v~~--~p~~p~~~GAlGA 282 (293)
T TIGR03192 221 AYCQAMAERVVSL--LERIGVEEGFFITGGIAKNPGVVKRIERILGI--------------KAVD--TKIDSQIAGALGA 282 (293)
T ss_pred HHHHHHHHHHHHH--hcccCCCCCEEEECcccccHHHHHHHHHHhCC--------------Ccee--CCCCccHHHHHHH
Confidence 5555555544322 11334557899999999999999999998842 2221 1336899999999
Q ss_pred HhhcC
Q psy9135 535 AIFAA 539 (1107)
Q Consensus 535 silas 539 (1107)
+++|.
T Consensus 283 AL~A~ 287 (293)
T TIGR03192 283 ALFGY 287 (293)
T ss_pred HHHHH
Confidence 99983
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.39 Score=53.02 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=38.8
Q ss_pred ccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhc
Q psy9135 477 ENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFA 538 (1107)
Q Consensus 477 ~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsila 538 (1107)
.+|+++||.+.-+|+.+.|+++|... + ..+.+..++ +|++..=+||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~-~----------~~~~v~~~~-~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA-K----------MAVAAENHP-DAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC-C----------cceEecCCC-cchHHHHHHHHHcC
Confidence 46999999999999999999999532 1 134454444 78999889998875
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.097 Score=60.72 Aligned_cols=70 Identities=19% Similarity=0.087 Sum_probs=58.6
Q ss_pred cCcceeeecccchhhhcccCC-------------ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHH
Q psy9135 835 YEVLSLLYVPSHLVSLCTLGV-------------NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSL 901 (1107)
Q Consensus 835 ~~vpsv~~~~~~~lalya~g~-------------~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~l 901 (1107)
..+..+.+.+|++.++|.... ..-+|||+|+.+|.++-+.+|.+.......++.| ...+.+.+.+.
T Consensus 151 I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G-~~~~~~~I~~~ 229 (344)
T PRK13917 151 INVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKG-TIDVYKRIASH 229 (344)
T ss_pred EEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccch-HHHHHHHHHHH
Confidence 456789999999999875422 2459999999999999999999988888889999 99999999999
Q ss_pred HHhh
Q psy9135 902 LIDE 905 (1107)
Q Consensus 902 L~~~ 905 (1107)
++.+
T Consensus 230 i~~~ 233 (344)
T PRK13917 230 ISKK 233 (344)
T ss_pred HHhh
Confidence 9544
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.28 Score=59.85 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=67.3
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC----------ceEEEEEeCCCceEEEEeecCEe
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV----------NTGLVLDIGYSEATLLPVYEGVP 184 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~----------~tglVVDiG~~~T~V~PV~dG~v 184 (1107)
..+++|.|++.....|..+.+.. +-.|..-++++++..+++..+|. ..-+|-|+|.++|+++-|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 55899999999999999887643 34567778888888888776653 46788999999999987753222
Q ss_pred cc-------cceE------EecccHHHHHHHHHHh
Q psy9135 185 VL-------CAWK------DLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l~-------~~~~------~~~iGG~~lt~~L~~l 206 (1107)
-. ..++ ....||..++..|++.
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~ 272 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDH 272 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHH
Confidence 11 1112 2357899999999998
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.015 Score=59.84 Aligned_cols=65 Identities=18% Similarity=0.220 Sum_probs=56.0
Q ss_pred HHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHH
Q psy9135 137 LFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHI 203 (1107)
Q Consensus 137 lFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L 203 (1107)
..|.-|...++...+|-++++-.+.++|-|||+|..+|-|.-+-+|.++.. ---+-||.+++-.|
T Consensus 115 ViESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGGGTTGIsi~kkGkViy~--ADEpTGGtHmtLvl 179 (277)
T COG4820 115 VIESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGGGTTGISIVKKGKVIYS--ADEPTGGTHMTLVL 179 (277)
T ss_pred eecccCceeeeecCCchhHHHHhccCCCcEEEeCCCcceeEEEEcCcEEEe--ccCCCCceeEEEEE
Confidence 457788899999999999999999999999999999999999999999865 34577887765444
|
|
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.9 Score=51.60 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=61.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCC------CceEEEEEeCCCceEEE--EeecCEec
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG------VNTGLVLDIGYSEATLL--PVYEGVPV 185 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g------~~tglVVDiG~~~T~V~--PV~dG~vl 185 (1107)
-...++|.|.+....+|+..-.. =---|..-+-+++.|.+|+.++| -.+-+|.|.|.++-.|. .|.+|.--
T Consensus 172 v~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFe 250 (663)
T KOG0100|consen 172 VTHAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFE 250 (663)
T ss_pred ccceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEE
Confidence 34578888888888888864321 11123344666777777776665 36889999999987664 66677532
Q ss_pred -ccceEEecccHHHHHHHHHHh
Q psy9135 186 -LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 -~~~~~~~~iGG~~lt~~L~~l 206 (1107)
....--...||.+.++...+.
T Consensus 251 VlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 251 VLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred EEecCCCcccCccchHHHHHHH
Confidence 222234679999998877766
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.11 Score=59.54 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=65.1
Q ss_pred HHHHHhhccccCCCCCeEEEEecC--C-Cc--HHHHHHHHH---HHH--------hhcCcceEEEecchhhhhccC----
Q psy9135 100 IRKIFFKYFVTSPKDKRIVVVESV--L-TP--TVWRNTLAK---VLF--------KHYEVLSLLYVPSHLVSLCTL---- 159 (1107)
Q Consensus 100 ~~~~~~~~L~~~~~~~~vllte~~--~-~~--~~~re~l~e---ilF--------E~~~vpsv~~~~~~lls~y~~---- 159 (1107)
..|.+. +-+..+.+-.+++.-|. + .. +..++.+.+ -+. +.+.+..+.+.|+++.|.|..
T Consensus 82 v~haL~-~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~~ 160 (318)
T PF06406_consen 82 VHHALL-KAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMDL 160 (318)
T ss_dssp HHHHHH-HHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHTS
T ss_pred HHHHHH-HcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHhh
Confidence 466663 34666777777888773 1 11 122222221 121 144578999999999988873
Q ss_pred -CCceEEEEEeCCCceEEEEeecCEecccce-EEecccHHHHHHHHHHh
Q psy9135 160 -GVNTGLVLDIGYSEATLLPVYEGVPVLCAW-KDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 160 -g~~tglVVDiG~~~T~V~PV~dG~vl~~~~-~~~~iGG~~lt~~L~~l 206 (1107)
...+.+|||||+.+|.++-|.++....... ...+.|-..+.+.+.+.
T Consensus 161 ~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~ 209 (318)
T PF06406_consen 161 DEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQA 209 (318)
T ss_dssp -TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHH
T ss_pred cccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHH
Confidence 336789999999999999888776544433 34578999999999988
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.12 Score=61.81 Aligned_cols=96 Identities=19% Similarity=0.056 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHH
Q psy9135 821 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895 (1107)
Q Consensus 821 ~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt 895 (1107)
+...+.+.+ .++.-++.-..++.+|++++++... ...+|||+|++.|.++-+.+|.+. ....+++| |+++|
T Consensus 165 ~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~G-G~~it 240 (420)
T PRK09472 165 NDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYA-GNVVT 240 (420)
T ss_pred hHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeech-HHHHH
Confidence 344445555 5577888888889999999998653 247899999999999999999776 56789999 99999
Q ss_pred HHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeec
Q psy9135 896 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 941 (1107)
Q Consensus 896 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~ 941 (1107)
+.+.+.|. ++.+.++.+|.+.....
T Consensus 241 ~dIa~~l~---------------------i~~~~AE~lK~~~g~~~ 265 (420)
T PRK09472 241 SDIAYAFG---------------------TPPSDAEAIKVRHGCAL 265 (420)
T ss_pred HHHHHHhC---------------------cCHHHHHHHHHhcceec
Confidence 98876552 23347899998876543
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.14 Score=58.67 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=88.8
Q ss_pred EEEecCcceEEEeccCCCC-ccEEEecceeccCCC------Cc------cceeecC----CHH----hh--HHHHH-HHH
Q psy9135 739 VVLDIGSKYTKYGIFGSFQ-PKGFIKSQVKDPHTN------KL------RNLYEYK----DAD----DL--YGLLI-EFI 794 (1107)
Q Consensus 739 vViD~Gs~~iK~G~age~~-P~~i~ps~vg~~~~~------~~------~~~~~~~----~~~----~~--~d~le-~i~ 794 (1107)
|.||-|+..+|+.|..+.. =+.+.|+.....-.. .. ...|..+ +.+ .+ ...+. -..
T Consensus 3 i~iDdG~~~~K~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~y~v~g~~yt~~~~~~~~~~t~~~~y~~s~~n~~av 82 (318)
T PF06406_consen 3 IAIDDGSTNVKLAWYEDGKIKTSISPNSFRSGWKVSFMGDSKSFNYEVDGEKYTVDEVSSDALDTTHVDYQYSDLNLVAV 82 (318)
T ss_dssp EEEEE-SSEEEEEEE-SS-EEEEEEE--EESS----S-SSS---EEESSSSEEEESTTBTTTTSS-HGGGGGSHHHHHHH
T ss_pred EEEecCCCceeEEEecCCeEEEEeccccccccccccccCCCceeEEEECCEEEEEcCCCCccccccccccccchhhHHHH
Confidence 7899999999999985432 233556554322111 00 0111111 111 11 22332 345
Q ss_pred HHHHHhccccCCCCceEEEEeccC--Cc-h--HHHHHH----HHHHh-------cccCcceeeecccchhhhccc-----
Q psy9135 795 RKIFFKYFVTSPKDKRIVVVESVL--TP-T--VWRNTL----AKVLF-------KHYEVLSLLYVPSHLVSLCTL----- 853 (1107)
Q Consensus 795 ~~~~~~~L~~~~~~~~vll~e~~~--~~-~--~~re~l----~eiLF-------E~~~vpsv~~~~~~~lalya~----- 853 (1107)
.|++. .-+..+.+..+++..|.. .. . ..++.+ ..+.. +.+.+..+.+.||++.|.|..
T Consensus 83 ~haL~-~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~~~ 161 (318)
T PF06406_consen 83 HHALL-KAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMDLD 161 (318)
T ss_dssp HHHHH-HHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHTS-
T ss_pred HHHHH-HcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHhhc
Confidence 67774 346777777788887732 11 1 112222 12221 145578999999999998873
Q ss_pred CCceEEEEEcCCCceEEEEEEcCEeeccceE-EEeccchHHHHHHHHHHHHhh
Q psy9135 854 GVNTGLVLDIGYSEATLLPVYEGVPVLCAWK-DLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 854 g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~-~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
...+-+|||+|+.+|.++-|.++.+..+... ..+.| -..+.+.+.+.|...
T Consensus 162 ~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~G-vs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 162 EDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIG-VSDLYDAIAQALRSA 213 (318)
T ss_dssp TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSS-THHHHHHHHHHTT--
T ss_pred ccCcEEEEEcCCCeEEeeeecCCccccchhccCCchh-HHHHHHHHHHHHHHh
Confidence 2357899999999999998887655444433 34678 899999999988764
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.089 Score=61.91 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhccccCCCC--CeEEEEecCCCcHHHHHHHHHHH---HhhcCcceEEEecchhhhhccCC-------
Q psy9135 93 YGLLIEFIRKIFFKYFVTSPKD--KRIVVVESVLTPTVWRNTLAKVL---FKHYEVLSLLYVPSHLVSLCTLG------- 160 (1107)
Q Consensus 93 ~~~le~i~~~~~~~~L~~~~~~--~~vllte~~~~~~~~re~l~eil---FE~~~vpsv~~~~~~lls~y~~g------- 160 (1107)
-+.+.++.+.-| ++-++.+++ .-+.++--..+..++-++..+-+ -..|=|...-+-.+++++.+++|
T Consensus 65 ~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseE 143 (475)
T PRK10719 65 EAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEE 143 (475)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhh
Confidence 355677777766 556676643 33333333333344433333321 11111111112222223333332
Q ss_pred -CceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHH
Q psy9135 161 -VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAH 202 (1107)
Q Consensus 161 -~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~ 202 (1107)
....++||||+++|+++-+.+|.+... ..+++||+++|.-
T Consensus 144 ke~gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D 184 (475)
T PRK10719 144 RNTRVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETD 184 (475)
T ss_pred ccCceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEEC
Confidence 257899999999999999999998865 7899999998865
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.6 Score=50.78 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHhcccCcceeeecccchh--hhcc--------c-CCc-eEEEEEcCCCceEEEEEEcCEeeccceEEEe
Q psy9135 820 PTVWRNTLAKVLFKHYEVLSLLYVPSHLV--SLCT--------L-GVN-TGLVLDIGYSEATLLPVYEGVPVLCAWKDLS 887 (1107)
Q Consensus 820 ~~~~re~l~eiLFE~~~vpsv~~~~~~~l--alya--------~-g~~-tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~ 887 (1107)
++...+.+.++ |+..|+.-..+..++++ -++. . ... +.++||+|+..|+++-+.+|.++ ..+.++
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 56666667666 45555544444444433 3332 1 122 48899999999999999999877 467899
Q ss_pred ccchHHHHHHHHHHH
Q psy9135 888 LGGGQSVESHIRSLL 902 (1107)
Q Consensus 888 ~G~G~~lt~~L~~lL 902 (1107)
+| |.++++.+.+.+
T Consensus 218 ~G-~~~i~~~i~~~~ 231 (348)
T TIGR01175 218 FG-TRQLTSELSRAY 231 (348)
T ss_pred ch-HHHHHHHHHHHc
Confidence 99 999998886554
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.35 E-value=7.5 Score=44.65 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=38.3
Q ss_pred EEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCC
Q psy9135 479 ILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAAT 540 (1107)
Q Consensus 479 IvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl 540 (1107)
|+++||++...++..-|++.|. .+|+.+| .+++..=+||+++|+-
T Consensus 346 iv~~GGva~n~av~~ale~~lg----------------~~V~vP~-~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLLG----------------RKVIVPP-YAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHhC----------------CeeecCC-ccchhhHHHHHHHHhh
Confidence 9999999999999999998873 3556556 8899999999999863
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.32 Score=57.32 Aligned_cols=86 Identities=17% Similarity=0.023 Sum_probs=65.8
Q ss_pred hcccCcceeeecccchhhhcccC-----CceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhc
Q psy9135 832 FKHYEVLSLLYVPSHLVSLCTLG-----VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEI 906 (1107)
Q Consensus 832 FE~~~vpsv~~~~~~~lalya~g-----~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~ 906 (1107)
.|+-+..--.++-++++|..++= .-.+++||+|++.|++.-+.+|.+. ....+|+| |+++|+-+.+-|.
T Consensus 174 v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvg-G~~vT~DIa~~l~--- 247 (418)
T COG0849 174 VERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVG-GDHVTKDIAKGLK--- 247 (418)
T ss_pred HHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeC-ccHHHHHHHHHhC---
Confidence 35556665666666777776643 2368999999999999999999877 45679999 9999999988873
Q ss_pred ccCCCCCCCccchhhhhcccHHHHHHHHHhceeec
Q psy9135 907 KALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 941 (1107)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~ 941 (1107)
.+.+.+|+||.++....
T Consensus 248 ------------------t~~~~AE~iK~~~g~a~ 264 (418)
T COG0849 248 ------------------TPFEEAERIKIKYGSAL 264 (418)
T ss_pred ------------------CCHHHHHHHHHHcCccc
Confidence 23447999999876544
|
|
| >PF10086 DUF2324: Putative membrane peptidase family (DUF2324); InterPro: IPR011397 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.14 Score=55.36 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=91.4
Q ss_pred cCCCeEEehhhHhHHHHHHHHHHhhhheeeee--cc---------c--chhHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q psy9135 583 MQDPVKVIILVASAFAWLLSLLLSSIVWFVIR--YQ---------C--NIIFGVVISVLCQEAFRYILYLILQKSRGGLQ 649 (1107)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------~--~~~~~~~~~v~~~e~~r~~~~~~~~~~~~~l~ 649 (1107)
.++.........++++|.++-.+.-..+.... +. + ....+.+++=.+||..|+..+|.+.|-....+
T Consensus 15 k~~~~~~~~f~~Ga~~F~v~~~vle~~l~~~~~~~~~~~~~~~~~~~l~~ly~~l~AGiFEE~gR~i~~k~l~kk~~~~~ 94 (223)
T PF10086_consen 15 KRKKISWKPFILGALVFFVFAQVLELPLHQIVLSPNADGLIWTSNPILYALYGGLMAGIFEETGRYIGFKYLLKKRRDWS 94 (223)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 35556666777788888877666654443321 11 1 33566778889999999999999987654333
Q ss_pred hhccccccccchhhhhhhccchhHHHHHHHHh----hhcccc--cCCCccc----------------cccCcceeeehhh
Q psy9135 650 YVSDRNTMDNTYAMAYVSGLGYGTISAAFSLL----NVLDQV--SGPGTMG----------------LKGESQYFGFTTS 707 (1107)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~g~g~g~~~~~~~~~----~~~~~~--~g~~~~~----------------~~~~~~~~~~~~~ 707 (1107)
. -|++-|+|||.+-+++.+. |.+.-+ --.|+.- ...-|...++.+.
T Consensus 95 ~------------~al~~GlGhGg~Eailvg~~~~l~~~v~~~~in~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 162 (223)
T PF10086_consen 95 D------------DALAYGLGHGGIEAILVGGLSLLNNLVLAMMINSGSLDQLLEQPAELLEQIQSALASLPPWSFLLGG 162 (223)
T ss_pred h------------HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhhHHHHHHHHHHcCcHHHHHHHH
Confidence 2 4888999999999988765 333222 1122211 0112444667777
Q ss_pred HHHHHHHHHHHhheeeEEeccccc
Q psy9135 708 IFTCCFSLLHVFWSIVFFRGVEIK 731 (1107)
Q Consensus 708 ~~~~~~~~~~~~~~~~~f~g~~~~ 731 (1107)
+=-.+=.++|+..+++.|-|+.++
T Consensus 163 ~ERi~Al~~hi~lSvlV~~av~~~ 186 (223)
T PF10086_consen 163 VERIFALLFHIGLSVLVWYAVRQR 186 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777788899999999999998854
|
However, they are predicted to be integral membrane proteins (with several transmembrane segments). |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=91.52 E-value=3.2 Score=48.07 Aligned_cols=109 Identities=20% Similarity=0.264 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhccccCCCCc-----------------eEEEEeccCCchHHHHHHHHHHhcccCcce--eeecccch
Q psy9135 787 YGLLIEFIRKIFFKYFVTSPKDK-----------------RIVVVESVLTPTVWRNTLAKVLFKHYEVLS--LLYVPSHL 847 (1107)
Q Consensus 787 ~d~le~i~~~~~~~~L~~~~~~~-----------------~vll~e~~~~~~~~re~l~eiLFE~~~vps--v~~~~~~~ 847 (1107)
.+.+++.+.+=..+++..+.++. .|+++-. ++..-+...++ |+..|..- +-+..-++
T Consensus 87 ~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~~-~~~aGL~~~~vDv~~~Al 162 (340)
T PF11104_consen 87 EKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVEL-FEEAGLKPVAVDVEAFAL 162 (340)
T ss_dssp HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHHH-HHHTT-EEEEEEEHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHHH-HHHcCCceEEEeehHHHH
Confidence 45677777766666665544332 2333322 34444444444 45556543 32223333
Q ss_pred hhhccc---------CCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHH
Q psy9135 848 VSLCTL---------GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLL 902 (1107)
Q Consensus 848 lalya~---------g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL 902 (1107)
.-+|.. ...+-++||+|++.|+++-+.+|.++ -.+.+++| |+++++.+.+.+
T Consensus 163 ~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G-~~~l~~~i~~~~ 223 (340)
T PF11104_consen 163 ARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIG-GNDLTEAIAREL 223 (340)
T ss_dssp GGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-S-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeC-HHHHHHHHHHhc
Confidence 334432 12345899999999999999999988 45778999 999998887765
|
|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.4 Score=50.21 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=60.1
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEE--ecchhhhhcc----CCCceEEEEEeCCCceEEEEeecCEeccc
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCT----LGVNTGLVLDIGYSEATLLPVYEGVPVLC 187 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~----~g~~tglVVDiG~~~T~V~PV~dG~vl~~ 187 (1107)
+..++-|. .+-.-.+++.+.+.+.+..|++-=.+ ..++.++..+ ....+++|+|+|.++|.++-+.+|.+..
T Consensus 72 ~i~~vaTs-a~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~~- 149 (300)
T TIGR03706 72 EVRAVATA-ALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPGE- 149 (300)
T ss_pred eEEEEEcH-HHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEeE-
Confidence 33444444 44445678888888888887653222 2334443333 1234579999999999999998887763
Q ss_pred ceEEecccHHHHHHHHHHh
Q psy9135 188 AWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 188 ~~~~~~iGG~~lt~~L~~l 206 (1107)
...+++|.-.+++.+...
T Consensus 150 -~~Sl~lG~vrl~e~f~~~ 167 (300)
T TIGR03706 150 -GVSLPLGCVRLTEQFFPD 167 (300)
T ss_pred -EEEEccceEEhHHhhCCC
Confidence 478999998888776543
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=91.06 E-value=4 Score=50.09 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=69.2
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-------ceEEEEEeCCCceEEEEee--cCE-e
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-------NTGLVLDIGYSEATLLPVY--EGV-P 184 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-------~tglVVDiG~~~T~V~PV~--dG~-v 184 (1107)
..+++|.|......+|+.. +-.-+-.|++-+-+.++|-+++.++|. .+-+|.|.|.....|..+. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at-~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAAT-KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHH-HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 5689999998888888754 445556778889999999998888763 4669999999998877654 443 1
Q ss_pred cccceEEecccHHHHHHHHHHh
Q psy9135 185 VLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+.-..--.+.||.++++.|.+.
T Consensus 223 vkat~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred hhhhcccccccchhhhHHHHHH
Confidence 2233344789999999999888
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=90.75 E-value=7.3 Score=43.46 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHH
Q psy9135 456 IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGA 535 (1107)
Q Consensus 456 L~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggs 535 (1107)
|.+.|...+.+.+..... |+++||...-+.+.+.|++.|++..+.. ++.+. . +|++.+..||.
T Consensus 206 la~~i~~~~~~~~~~~~~-----v~l~GGv~~~~~~~~~l~~~l~~~~~~~---------~~~~~--~-~~~~~~a~GAa 268 (271)
T PF01869_consen 206 LAELIKAVLKRLGPEKEP-----VVLSGGVFKNSPLVKALRDALKEKLPKV---------PIIIP--V-EPQYDPAYGAA 268 (271)
T ss_dssp HHHHHHHHHHTCTCCCCS-----EEEESGGGGCHHHHHHHGGGS-HHHHCC---------TCECE--C-CGSSHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCe-----EEEECCccCchHHHHHHHHHHHHhcCCC---------ceEEC--C-CCCccHHHHHH
Confidence 666777777666543222 9999999888888777777776665541 22332 2 68999999999
Q ss_pred hhc
Q psy9135 536 IFA 538 (1107)
Q Consensus 536 ila 538 (1107)
++|
T Consensus 269 llA 271 (271)
T PF01869_consen 269 LLA 271 (271)
T ss_dssp HHH
T ss_pred HhC
Confidence 886
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.4 Score=53.81 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=59.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhcCcceEEE--ecchhhhhccC-----CCceEEEEEeCCCceEEEEeecCEecccce
Q psy9135 117 IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCTL-----GVNTGLVLDIGYSEATLLPVYEGVPVLCAW 189 (1107)
Q Consensus 117 vllte~~~~~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~~-----g~~tglVVDiG~~~T~V~PV~dG~vl~~~~ 189 (1107)
.++.-...-.-.+++.+.+-+.+..|++==.+ -.++-++.+|. ...+++|||||.++|.++-+.+|.+.. .
T Consensus 80 ~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~~--~ 157 (496)
T PRK11031 80 RVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQATS--L 157 (496)
T ss_pred EEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCceee--e
Confidence 34444445555667888888888888763222 34444444432 123589999999999999999988764 4
Q ss_pred EEecccHHHHHHHHH
Q psy9135 190 KDLSLGGQSVEAHIR 204 (1107)
Q Consensus 190 ~~~~iGG~~lt~~L~ 204 (1107)
..+++|.-.+++.+.
T Consensus 158 ~Sl~lG~vrl~e~f~ 172 (496)
T PRK11031 158 FSLSMGCVTWLERYF 172 (496)
T ss_pred eEEeccchHHHHHhc
Confidence 789999988776543
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.81 Score=54.14 Aligned_cols=153 Identities=16% Similarity=0.085 Sum_probs=82.9
Q ss_pred ceEEEecCcceEEEeccC---------CCCccEEEe--cceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhccccC
Q psy9135 737 TGVVLDIGSKYTKYGIFG---------SFQPKGFIK--SQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVTS 805 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~ag---------e~~P~~i~p--s~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~~ 805 (1107)
..|=||+||.+|+.=||- ...||..+- .++.|.. -....+.. +..-|-+.++++.+.-| +.-++.
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~--i~fTPl~~-~~~ID~~~i~~~V~~ey-~~Agi~ 82 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSP--IYFTPLLK-QGEIDEAAIKELIEEEY-QKAGIA 82 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecC--ceecCCCC-CccccHHHHHHHHHHHH-HHcCCC
Confidence 468899999999988762 224554431 1111110 00011111 22234567888888776 566777
Q ss_pred CCC--ceEEEEeccCCchHHHHHHHHHH---hcccCcceeeecccchhhhcccC--------CceEEEEEcCCCceEEEE
Q psy9135 806 PKD--KRIVVVESVLTPTVWRNTLAKVL---FKHYEVLSLLYVPSHLVSLCTLG--------VNTGLVLDIGYSEATLLP 872 (1107)
Q Consensus 806 ~~~--~~vll~e~~~~~~~~re~l~eiL---FE~~~vpsv~~~~~~~lalya~g--------~~tglVVDiG~~~T~v~P 872 (1107)
|++ ..+.++--..+..++-++..+-+ -..|=|...-.--+++++.+|+| ....++||+|.+.|+++-
T Consensus 83 ~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 83 PESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred HHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCceEEEE
Confidence 753 22333333333333333444321 11221111111222223333333 246789999999999999
Q ss_pred EEcCEeeccceEEEeccchHHHHH
Q psy9135 873 VYEGVPVLCAWKDLSLGGGQSVES 896 (1107)
Q Consensus 873 V~dG~~l~~~~~~~~~G~G~~lt~ 896 (1107)
+.+|.++ .....++| |+++|.
T Consensus 163 f~~G~l~--~T~~l~vG-G~~IT~ 183 (475)
T PRK10719 163 FDAGKVI--DTACLNVG-GRLIET 183 (475)
T ss_pred EECCEEE--EEEEEecc-cceEEE
Confidence 9999877 45678999 987765
|
|
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=90.30 E-value=16 Score=44.97 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=69.8
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------------ceEEEEEeCCCceEEEEee
Q psy9135 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------------NTGLVLDIGYSEATLLPVY 180 (1107)
Q Consensus 113 ~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------------~tglVVDiG~~~T~V~PV~ 180 (1107)
.-.+++|..|.+....+|..++... .--|+.-+-++++.-+++.++|. .+-+-||+||+.++++-+-
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 4567999999999999999887653 45677888888888877777663 3478899999999887554
Q ss_pred c--CEec-ccceEEecccHHHHHHHHHHh
Q psy9135 181 E--GVPV-LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 181 d--G~vl-~~~~~~~~iGG~~lt~~L~~l 206 (1107)
- |..- ..+...-.+||++.++.|.+.
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~h 243 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDH 243 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHH
Confidence 3 3322 222333579999999999988
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=89.79 E-value=3.7 Score=50.62 Aligned_cols=95 Identities=17% Similarity=0.157 Sum_probs=69.9
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC----------CceEEEEEcCCCceEEEEEEcCEe
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG----------VNTGLVLDIGYSEATLLPVYEGVP 878 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g----------~~tglVVDiG~~~T~v~PV~dG~~ 878 (1107)
..+++|.|++.....|..+.+-- +-.|..-+++++...+++..+| .+.-+|-|+|.++|+++-|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 45899999999999999887754 2345666889998888877665 346789999999999887753221
Q ss_pred e-------ccceEEE------eccchHHHHHHHHHHHHhh
Q psy9135 879 V-------LCAWKDL------SLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 879 l-------~~~~~~~------~~G~G~~lt~~L~~lL~~~ 905 (1107)
- ...++.. .+| |..++..|++.|.+.
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLG-G~e~~~rLr~~l~~~ 276 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLG-GLEMTMRLRDHLANE 276 (902)
T ss_pred ccccccCccceEEEEeeccCCccc-hHHHHHHHHHHHHHH
Confidence 1 1123333 355 999999999998765
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=2.4 Score=52.08 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=58.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhhcCcceEEE--ecchhhhhccCC-----CceEEEEEeCCCceEEEEeecCEecccce
Q psy9135 117 IVVVESVLTPTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCTLG-----VNTGLVLDIGYSEATLLPVYEGVPVLCAW 189 (1107)
Q Consensus 117 vllte~~~~~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~~g-----~~tglVVDiG~~~T~V~PV~dG~vl~~~~ 189 (1107)
.++.-...-.-.+++.+.+-+.+..|++-=.+ -.++-++..|.- ..+++|||||.++|.++-+-+|.+.. .
T Consensus 85 ~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~ 162 (513)
T PRK10854 85 CIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--V 162 (513)
T ss_pred EEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--e
Confidence 33444444455667888888888888763333 244444444421 24689999999999999999987654 3
Q ss_pred EEecccHHHHHHHH
Q psy9135 190 KDLSLGGQSVEAHI 203 (1107)
Q Consensus 190 ~~~~iGG~~lt~~L 203 (1107)
..+++|.-.+++.+
T Consensus 163 ~S~~lG~vrl~e~f 176 (513)
T PRK10854 163 ESRRMGCVSFAQLY 176 (513)
T ss_pred EEEecceeeHHhhh
Confidence 56699998887744
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.52 E-value=15 Score=41.65 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=36.5
Q ss_pred EEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHH
Q psy9135 858 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLL 902 (1107)
Q Consensus 858 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL 902 (1107)
..|+|||++.|+++-+++|.++.. +..++| |+.+++.+.+..
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g-~~Qlt~~i~r~~ 236 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVG-TDQLTQEIQRAY 236 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCc-HHHHHHHHHHHh
Confidence 458999999999999999999855 889999 888888777665
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.27 E-value=4 Score=49.90 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=50.0
Q ss_pred EEEeccCCchHHHHHHHHHHhcccCcceeeec---ccchhhhccc-----CCceEEEEEcCCCceEEEEEEcCEeeccce
Q psy9135 812 VVVESVLTPTVWRNTLAKVLFKHYEVLSLLYV---PSHLVSLCTL-----GVNTGLVLDIGYSEATLLPVYEGVPVLCAW 883 (1107)
Q Consensus 812 ll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~---~~~~lalya~-----g~~tglVVDiG~~~T~v~PV~dG~~l~~~~ 883 (1107)
++.-+..-.-.+++.+.+-+.+..|++ +-++ .++.++.+|. ...+++|||+|.++|.++-+-+|.+. ..
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 157 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL 157 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence 333344444556677777777777765 2222 2222222221 12358999999999999998888765 45
Q ss_pred EEEeccchHHHH
Q psy9135 884 KDLSLGGGQSVE 895 (1107)
Q Consensus 884 ~~~~~G~G~~lt 895 (1107)
..+|+| .-.++
T Consensus 158 ~Sl~lG-~vrl~ 168 (496)
T PRK11031 158 FSLSMG-CVTWL 168 (496)
T ss_pred eEEecc-chHHH
Confidence 688999 65544
|
|
| >TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein | Back alignment and domain information |
|---|
Probab=85.02 E-value=5.9 Score=45.20 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=25.9
Q ss_pred CCCceEEEEEeCCCceEEEEeecCEeccc
Q psy9135 159 LGVNTGLVLDIGYSEATLLPVYEGVPVLC 187 (1107)
Q Consensus 159 ~g~~tglVVDiG~~~T~V~PV~dG~vl~~ 187 (1107)
....+++++|||..+|.|+||.+|.+...
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeeee
Confidence 34688999999999999999999999854
|
This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages. |
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.44 E-value=3.4 Score=49.98 Aligned_cols=82 Identities=17% Similarity=0.062 Sum_probs=57.0
Q ss_pred cCCCcHHHHHHHHHHHHhhcCcceEEE--ecchhhhhccC----C-CceEEEEEeCCCceEEEEeecCEecccceEEecc
Q psy9135 122 SVLTPTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCTL----G-VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSL 194 (1107)
Q Consensus 122 ~~~~~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~~----g-~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~i 194 (1107)
..+-.-.+++.+.+.+-+.+|++-=.+ -.++-++.+|+ + ...++|+|||.++|.++=+-+..+.. ...+++
T Consensus 82 sA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~ 159 (492)
T COG0248 82 SALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIGL--LISLPL 159 (492)
T ss_pred HHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccce--eEEeec
Confidence 344344556667777777888874444 34555555553 3 67899999999999999887766664 377889
Q ss_pred cHHHHHHHHHH
Q psy9135 195 GGQSVEAHIRR 205 (1107)
Q Consensus 195 GG~~lt~~L~~ 205 (1107)
|.-.+++.+..
T Consensus 160 G~v~lt~~~~~ 170 (492)
T COG0248 160 GCVRLTERFFP 170 (492)
T ss_pred ceEEeehhhcC
Confidence 98777766654
|
|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=83.67 E-value=5.7 Score=45.22 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=52.1
Q ss_pred CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecc---cchhhhcc----cCCceEEEEEcCCCceEEEEEEcCEee
Q psy9135 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCT----LGVNTGLVLDIGYSEATLLPVYEGVPV 879 (1107)
Q Consensus 807 ~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~---~~~lalya----~g~~tglVVDiG~~~T~v~PV~dG~~l 879 (1107)
++..++-|. .+-.-.+++.+.+.+.+..|+. +-++. ++.+...+ ....+++|+|+|.++|.++-+.+|.+.
T Consensus 71 ~~i~~vaTs-a~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 71 DEVRAVATA-ALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred CeEEEEEcH-HHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 344444444 3334456777787777766654 33333 23332222 122457999999999999998888655
Q ss_pred ccceEEEeccchHHHHH
Q psy9135 880 LCAWKDLSLGGGQSVES 896 (1107)
Q Consensus 880 ~~~~~~~~~G~G~~lt~ 896 (1107)
....+|+| .-.+++
T Consensus 149 --~~~Sl~lG-~vrl~e 162 (300)
T TIGR03706 149 --EGVSLPLG-CVRLTE 162 (300)
T ss_pred --EEEEEccc-eEEhHH
Confidence 45789999 444443
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=81.37 E-value=5 Score=49.25 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=48.3
Q ss_pred EEEeccCCchHHHHHHHHHHhcccCcceeeecc---cchhhhccc-----CCceEEEEEcCCCceEEEEEEcCEeeccce
Q psy9135 812 VVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCTL-----GVNTGLVLDIGYSEATLLPVYEGVPVLCAW 883 (1107)
Q Consensus 812 ll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~---~~~lalya~-----g~~tglVVDiG~~~T~v~PV~dG~~l~~~~ 883 (1107)
++.-+..-.-.+++.+.+-+.+..|++ +-+++ ++.++..|. ...+++|||+|.++|.++-+-+|.+.. .
T Consensus 86 ~vATsAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~ 162 (513)
T PRK10854 86 IVGTHTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--V 162 (513)
T ss_pred EEehHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE--e
Confidence 333334444556677777777777765 22222 222222221 124689999999999999998886543 3
Q ss_pred EEEeccchHHHHH
Q psy9135 884 KDLSLGGGQSVES 896 (1107)
Q Consensus 884 ~~~~~G~G~~lt~ 896 (1107)
...++| .-.+++
T Consensus 163 ~S~~lG-~vrl~e 174 (513)
T PRK10854 163 ESRRMG-CVSFAQ 174 (513)
T ss_pred EEEecc-eeeHHh
Confidence 455777 544444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1107 | ||||
| 1c0f_A | 368 | Crystal Structure Of Dictyostelium Caatp-Actin In C | 9e-11 | ||
| 4efh_A | 375 | Acanthamoeba Actin Complex With Spir Domain D Lengt | 1e-10 | ||
| 3a5m_C | 375 | Crystal Structure Of A Dictyostelium P109i Mg2+-Act | 2e-10 | ||
| 3a5l_C | 375 | Crystal Structure Of A Dictyostelium P109a Mg2+-Act | 3e-10 | ||
| 3chw_A | 375 | Complex Of Dictyostelium Discoideum Actin With Prof | 4e-10 | ||
| 1nlv_A | 375 | Crystal Structure Of Dictyostelium Discoideum Actin | 1e-09 | ||
| 1yvn_A | 375 | The Yeast Actin Val 159 Asn Mutant Complex With Hum | 1e-09 | ||
| 1yvn_A | 375 | The Yeast Actin Val 159 Asn Mutant Complex With Hum | 2e-09 | ||
| 3eks_A | 375 | Crystal Structure Of Monomeric Actin Bound To Cytoc | 1e-09 | ||
| 3ci5_A | 375 | Complex Of Phosphorylated Dictyostelium Discoideum | 2e-09 | ||
| 3b63_F | 357 | Actin Filament Model In The Extended Form Of Acroms | 2e-09 | ||
| 3b63_B | 364 | Actin Filament Model In The Extended Form Of Acroms | 2e-09 | ||
| 2hf3_A | 374 | Crystal Structure Of Monomeric Actin In The Adp Bou | 2e-09 | ||
| 3w3d_A | 374 | Crystal Structure Of Smooth Muscle G Actin Dnase I | 2e-09 | ||
| 3b63_A | 365 | Actin Filament Model In The Extended Form Of Acroms | 2e-09 | ||
| 1eqy_A | 377 | Complex Between Rabbit Muscle Alpha-Actin: Human Ge | 3e-09 | ||
| 1ijj_A | 377 | The X-Ray Crystal Structure Of The Complex Between | 3e-09 | ||
| 1t44_A | 370 | Structural Basis Of Actin Sequestration By Thymosin | 3e-09 | ||
| 1yag_A | 375 | Structure Of The Yeast Actin-human Gelsolin Segment | 3e-09 | ||
| 1yag_A | 375 | Structure Of The Yeast Actin-human Gelsolin Segment | 4e-09 | ||
| 3b63_E | 365 | Actin Filament Model In The Extended Form Of Acroms | 3e-09 | ||
| 3g37_O | 376 | Cryo-Em Structure Of Actin Filament In The Presence | 3e-09 | ||
| 1qz5_A | 375 | Structure Of Rabbit Actin In Complex With Kabiramid | 3e-09 | ||
| 4b1v_A | 376 | Structure Of The Phactr1 Rpel-N Domain Bound To G-A | 3e-09 | ||
| 1kxp_A | 375 | Crystal Structure Of Human Vitamin D-binding Protei | 3e-09 | ||
| 2gwj_A | 371 | Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form | 3e-09 | ||
| 1c0g_A | 375 | Crystal Structure Of 1:1 Complex Between Gelsolin S | 3e-09 | ||
| 1dej_A | 375 | Crystal Structure Of A DictyosteliumTETRAHYMENA CHI | 3e-09 | ||
| 2w49_D | 372 | Isometrically Contracting Insect Asynchronous Fligh | 3e-09 | ||
| 1atn_A | 373 | Atomic Structure Of The Actin:dnase I Complex Lengt | 3e-09 | ||
| 3m6g_A | 371 | Crystal Structure Of Actin In Complex With Lobophor | 4e-09 | ||
| 3b63_C | 365 | Actin Filament Model In The Extended Form Of Acroms | 5e-09 | ||
| 3mn5_A | 359 | Structures Of Actin-Bound Wh2 Domains Of Spire And | 5e-09 | ||
| 1lcu_A | 371 | Polylysine Induces An Antiparallel Actin Dimer That | 7e-09 | ||
| 3b63_D | 357 | Actin Filament Model In The Extended Form Of Acroms | 7e-09 | ||
| 1d4x_A | 375 | Crystal Structure Of Caenorhabditis Elegans Mg-Atp | 8e-09 | ||
| 2oan_A | 375 | Structure Of Oxidized Beta-Actin Length = 375 | 1e-08 | ||
| 3u4l_A | 375 | Cryocooled Bovine Profilin:actin Crystal Structure | 2e-08 | ||
| 3b63_L | 365 | Actin Filament Model In The Extended Form Of Acroms | 2e-08 | ||
| 2btf_A | 375 | The Structure Of Crystalline Profilin-Beta-Actin Le | 2e-08 | ||
| 3byh_A | 374 | Model Of Actin-Fimbrin Abd2 Complex Length = 374 | 2e-08 | ||
| 3qb0_A | 498 | Crystal Structure Of Actin-Related Protein Arp4 Fro | 2e-07 | ||
| 2p9k_B | 394 | Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta | 5e-06 | ||
| 1k8k_B | 394 | Crystal Structure Of Arp23 COMPLEX Length = 394 | 5e-06 | ||
| 1k8k_A | 418 | Crystal Structure Of Arp23 COMPLEX Length = 418 | 1e-04 | ||
| 1k8k_A | 418 | Crystal Structure Of Arp23 COMPLEX Length = 418 | 3e-04 | ||
| 3dwl_A | 427 | Crystal Structure Of Fission Yeast Arp2/3 Complex L | 5e-04 |
| >pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 | Back alignment and structure |
|
| >pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 | Back alignment and structure |
|
| >pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
|
| >pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
|
| >pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 | Back alignment and structure |
|
| >pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
|
| >pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
|
| >pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
|
| >pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 | Back alignment and structure |
|
| >pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 | Back alignment and structure |
|
| >pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 | Back alignment and structure |
|
| >pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 | Back alignment and structure |
|
| >pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 | Back alignment and structure |
|
| >pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 | Back alignment and structure |
|
| >pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 | Back alignment and structure |
|
| >pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 | Back alignment and structure |
|
| >pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 | Back alignment and structure |
|
| >pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 | Back alignment and structure |
|
| >pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 | Back alignment and structure |
|
| >pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 | Back alignment and structure |
|
| >pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 | Back alignment and structure |
|
| >pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 | Back alignment and structure |
|
| >pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 | Back alignment and structure |
|
| >pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 | Back alignment and structure |
|
| >pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 | Back alignment and structure |
|
| >pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 | Back alignment and structure |
|
| >pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 | Back alignment and structure |
|
| >pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 | Back alignment and structure |
|
| >pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 | Back alignment and structure |
|
| >pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 | Back alignment and structure |
|
| >pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 | Back alignment and structure |
|
| >pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 | Back alignment and structure |
|
| >pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 | Back alignment and structure |
|
| >pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 | Back alignment and structure |
|
| >pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 | Back alignment and structure |
|
| >pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 | Back alignment and structure |
|
| >pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 | Back alignment and structure |
|
| >pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 | Back alignment and structure |
|
| >pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 | Back alignment and structure |
|
| >pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 | Back alignment and structure |
|
| >pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 | Back alignment and structure |
|
| >pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 | Back alignment and structure |
|
| >pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 | Back alignment and structure |
|
| >pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 | Back alignment and structure |
|
| >pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 | Back alignment and structure |
|
| >pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 | Back alignment and structure |
|
| >pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-25
Identities = 75/533 (14%), Positives = 154/533 (28%), Gaps = 98/533 (18%)
Query: 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLY----EYKDADDLYGL----- 95
VV+D GS T G GS P+ + S ++ Y L
Sbjct: 26 VVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIE 85
Query: 96 --------LIEFI-RKIFFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLS 145
+ + + ++ E V T R +VL + + +
Sbjct: 86 NGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEA 145
Query: 146 LLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRR 205
P+ G LV+DIG+ ++ P+ +G+ + + + +
Sbjct: 146 CYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIA---------- 195
Query: 206 GQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 265
G+ + I+ L + P + + S + R
Sbjct: 196 GKFINHLIKKALEPK-----EIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNR--GFF 248
Query: 266 AKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASS 325
+ K +S + + E
Sbjct: 249 -QECKETLCHICPTKTLEETKTELS-----STAKRSIESP-------------------- 282
Query: 326 DGREET--QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLG 383
E + E+L F+ +
Sbjct: 283 WNEEIVFDNETRYGF------AEEL--------------FLPKEDDIPANWPRSNSG--V 320
Query: 384 GAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAF 443
+ KR V ++ + + KS +P + + +
Sbjct: 321 VKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQ--EAVSKSTSPAANSADTPNETGKRP 378
Query: 444 EVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELR 500
+ + +++ +A ++ S++ + D++ LA N++LTGGT+ PGL RL+ EL
Sbjct: 379 LEEEKPPKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELN 438
Query: 501 TLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
+ P K ++ + Y +WLGG+I + ++++ + K Y
Sbjct: 439 KI--LPSLKFRILT-----TGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEY 484
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 2e-17
Identities = 50/295 (16%), Positives = 101/295 (34%), Gaps = 25/295 (8%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDIGSKYTKYG--IFGSFQPKGFIKSQVKDPH 76
E + VV+D GS T G GS P+ ++ + YG K F + + P
Sbjct: 22 EVSAVVIDPGSYTTNIGYSGSDFPQSIL------PSVYGKYTADEGNKKIFSEQSIGIPR 75
Query: 77 TN-KLRNLYE---YKDADDLYGLLIEFIRKIFFKYFVTSPKDKR-IVVVESVLTPTVWRN 131
+ +L+ + E D D + + ++ E V T R
Sbjct: 76 KDYELKPIIENGLVIDWDTAQEQW----QWALQNELYLNSNSGIPALLTEPVWNSTENRK 131
Query: 132 TLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKD 191
+VL + + + P+ G LV+DIG+ ++ P+ +G+ + + +
Sbjct: 132 KSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRR 191
Query: 192 LSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVED-VENLSDS--IIEDI 248
+ G+ + I++ + I I + K + V+ + + +++ ++
Sbjct: 192 NFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQEC 251
Query: 249 KVCSCFVT-TMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLF 302
K C + T + K ++I R E LF
Sbjct: 252 KETLCHICPTKTLEETKTELSSTAKRS----IESPWNEEIVFDNETRYGFAEELF 302
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 2e-17
Identities = 43/282 (15%), Positives = 81/282 (28%), Gaps = 38/282 (13%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLY----EYKDADDLYGL----- 789
VV+D GS T G GS P+ + S ++ Y L
Sbjct: 26 VVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIE 85
Query: 790 --------LIEFI-RKIFFKYFVTSPKDKR-IVVVESVLTPTVWRNTLAKVLFKHYEVLS 839
+ + + ++ E V T R +VL + + +
Sbjct: 86 NGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEA 145
Query: 840 LLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIR 899
P+ G LV+DIG+ ++ P+ +G+ + + + + G+ + I+
Sbjct: 146 CYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFI-AGKFINHLIK 204
Query: 900 SLLIDE-----IKALENPDPYIVTVEDVENLSDS--------IIEDIKVCSCFVT-TMER 945
L + + +I D E ++ K C + T
Sbjct: 205 KALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTL 264
Query: 946 SAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLF 987
+ K ++I R E LF
Sbjct: 265 EETKTELSSTAKRS----IESPWNEEIVFDNETRYGFAEELF 302
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 | Back alignment and structure |
|---|
Score = 86.3 bits (214), Expect = 5e-18
Identities = 85/405 (20%), Positives = 149/405 (36%), Gaps = 66/405 (16%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVLDI-GSKYTKYGIFGSFQPKGFIKSQVKDPHT 77
E T +V D GS K G G P+ V I G + + G Q ++ + +
Sbjct: 4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 63
Query: 78 NKLRNLYEYKDADDLYGLLIEFI-RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKV 136
L Y + +E I F+ +P++ ++ E+ L P R + ++
Sbjct: 64 I-LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQI 122
Query: 137 LFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGG 196
+F+ + V ++ ++SL G TG+VLD G +P+YEG + A L L G
Sbjct: 123 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG 182
Query: 197 QSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256
+ + ++ K L VT + E I+ DIK C+V
Sbjct: 183 RDLTDYLM-----------------KILTERGYSFVTTAERE-----IVRDIKEKLCYVA 220
Query: 257 T-MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIA 312
E AA + + Y L +G+ I + G+ R E LF+ + ++ I
Sbjct: 221 LDFENEMATAASSSSLEKS----YELPDGQVITI-GNERFRCPETLFQPSFIGMESAGIH 275
Query: 313 TIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLC---CLVGWSNIC----------C 359
+S++ +C ++ R + L + G + +
Sbjct: 276 ETTYNSIM----------------KCDIDIR--KDLYANNVMSGGTTMYPGIADRMQKEI 317
Query: 360 YKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNKRAIQKDVY 403
L K E Y W+GG+I A+ ++ + I K Y
Sbjct: 318 TALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 362
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 1e-17
Identities = 83/391 (21%), Positives = 145/391 (37%), Gaps = 77/391 (19%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKD------ADDLYGLLI- 791
+V D GS K G G P+ S V P + KD A G+L
Sbjct: 8 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 67
Query: 792 ------------EFIRKI----FFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHY 835
+ + KI F+ +P++ ++ E+ L P R + +++F+ +
Sbjct: 68 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 127
Query: 836 EVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895
V ++ ++SL G TG+VLD G +P+YEG + A L L G+ +
Sbjct: 128 NVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL-AGRDLT 186
Query: 896 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT-MERSAEIAAKNP 954
++ +L + VT + E I+ DIK C+V E AA +
Sbjct: 187 DYLMKILTER-------GYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAASSS 234
Query: 955 DHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSD 1011
+ Y L +G+ I + G+ R E LF+ + ++ I +S++
Sbjct: 235 SLEKS----YELPDGQVITI-GNERFRCPETLFQPSFIGMESAGIHETTYNSIM------ 283
Query: 1012 GREETQYFPFRCWVNTRTPEKLC---CLVGWSNIC----------CYKLFIKNFKFHEFP 1058
+C ++ R + L + G + + L K
Sbjct: 284 ----------KCDIDIR--KDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIA 331
Query: 1059 AKE-NYVAWLGGAIFAATESYNKRAIQKDVY 1088
E Y W+GG+I A+ ++ + I K Y
Sbjct: 332 PPERKYSVWIGGSILASLSTFQQMWITKQEY 362
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 28/129 (21%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ + ++ I +S++K D++K L N +++GGT M PG+
Sbjct: 251 GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIA 310
Query: 493 YRLLQELRTL--------IESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYN 544
R+ +E+ L I +PP + Y W+GG+I A+ ++
Sbjct: 311 DRMQKEITALAPSTMKIKIIAPPER-----------------KYSVWIGGSILASLSTFQ 353
Query: 545 KRAIQKDAY 553
+ I K Y
Sbjct: 354 QMWITKQEY 362
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 1e-17
Identities = 79/382 (20%), Positives = 150/382 (39%), Gaps = 65/382 (17%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQV---KDPHTNKLRNLYEYKD------ADDLYGL 789
VV D G+ + K G GS P+ + V T K+ N+ E KD A +L +
Sbjct: 9 VVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNI-EIKDLMVGDEASELRSM 67
Query: 790 L----------------IEFI-RKIFFK-YFVTSPKDKRIVVVESVLTPTVWRNTLAKVL 831
L ++ + F ++ +I++ E + PT R + +V+
Sbjct: 68 LEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVM 127
Query: 832 FKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGG 891
F+ Y+ + +++L G+ TG+V+D G + PVYEG + + L + G
Sbjct: 128 FETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDI-AG 186
Query: 892 QSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT-MERSAEIA 950
+ + ++ LL+ D E + IK C+V +E+ ++A
Sbjct: 187 RDITRYLIKLLLLR-------GYAFNHSADFE-----TVRMIKEKLCYVGYNIEQEQKLA 234
Query: 951 AKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSV 1007
+ Y L +G+ I V G R A E LF+ ++++ + +A ++ +++ +
Sbjct: 235 LETTVLVES----YTLPDGRIIKV-GGERFEAPEALFQPHLINVEGVGVAELLFNTIQA- 288
Query: 1008 ASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF 1057
A D R E + +P + +R +L L + + FK
Sbjct: 289 ADIDTRSEFYKHIVLSGGSTMYPG---LPSRLERELKQLYLERVLKGDVEKLSKFKIRIE 345
Query: 1058 PAKE-NYVAWLGGAIFAATESY 1078
++ +LGGA+ A
Sbjct: 346 DPPRRKHMVFLGGAVLADIMKD 367
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 4e-17
Identities = 80/391 (20%), Positives = 150/391 (38%), Gaps = 74/391 (18%)
Query: 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQV---KDPHTNKLRNLYEYKD------ADDLYGL 95
VV D G+ + K G GS P+ + V T K+ N+ E KD A +L +
Sbjct: 9 VVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNI-EIKDLMVGDEASELRSM 67
Query: 96 L----------------IEFI-RKIFFK-YFVTSPKDKRIVVVESVLTPTVWRNTLAKVL 137
L ++ + F ++ +I++ E + PT R + +V+
Sbjct: 68 LEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVM 127
Query: 138 FKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQ 197
F+ Y+ + +++L G+ TG+V+D G + PVYEG + + L + G+
Sbjct: 128 FETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGR 187
Query: 198 SVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT 257
+ ++ IK L D E + IK C+V
Sbjct: 188 DITRYL-----------------IKLLLLRGYAFNHSADFE-----TVRMIKEKLCYVGY 225
Query: 258 -MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFE---LDLDMLNIAT 313
+E+ ++A + Y L +G+ I V G R A E LF+ ++++ + +A
Sbjct: 226 NIEQEQKLALETTVLVES----YTLPDGRIIKV-GGERFEAPEALFQPHLINVEGVGVAE 280
Query: 314 IILDSLLSVASSDGREE----------TQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLF 363
++ +++ + A D R E + +P + +R +L L +
Sbjct: 281 LLFNTIQA-ADIDTRSEFYKHIVLSGGSTMYPG---LPSRLERELKQLYLERVLKGDVEK 336
Query: 364 IKNFKFHEFPAKE-NYVAWLGGAIFAATESY 393
+ FK ++ +LGGA+ A
Sbjct: 337 LSKFKIRIEDPPRRKHMVFLGGAVLADIMKD 367
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G R A E LF+ ++++ + +A ++ +++ D + ++I+L+GG+ M PGL
Sbjct: 255 GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLP 314
Query: 493 YRLLQELRTLI-ESPPYKDKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESY 543
RL +EL+ L E D + FK ++ +LGGA+ A
Sbjct: 315 SRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKD 367
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 2e-15
Identities = 75/439 (17%), Positives = 136/439 (30%), Gaps = 87/439 (19%)
Query: 19 EKTGVVLDIGSKYTKYGIFGSFQPKGVVL-DIGSKYTKYGIFGSFQPKGFIKSQVKDPHT 77
+++D G+ Y+K G G+ P V I ++ + K + H
Sbjct: 4 FNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHL 63
Query: 78 NKLRNLYEYK-----DADDLYGLLIEFIRKI------------------FFKYFVTSPKD 114
+ R + DA I FKY P+D
Sbjct: 64 SSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPED 123
Query: 115 KRIVVVESVLTPTVWRNTLAKVLFKHYE----------VLSLLYVPSHLVSLCTLGVNTG 164
++ E L P R A+++F+ + VL+L S S T TG
Sbjct: 124 HYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAA--SWTSSKVTDRSLTG 181
Query: 165 LVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKAL 224
V+D G ++PV EG + + K + L G+ V + L
Sbjct: 182 TVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFV-----------------QSLL 224
Query: 225 ENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT-MERSAEIAAKNPDHKYPSGFMYPLKN 283
+ + +++ E IK C+V + + + PD +
Sbjct: 225 RDRNEPDSSLK--------TAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGH 276
Query: 284 GKKIPVSGHIRETAFEVLFELDLDMLN----IATIILDSLLSVASSDGREE--------- 330
I V G R A E+ F ++ + + ++ + + S + D R+
Sbjct: 277 STTIDV-GFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQS-SPIDVRKGLYKNIVLSG 334
Query: 331 --TQY--FPFRCW--VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGG 384
T + F R + E++ S + + ++ W GG
Sbjct: 335 GSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVIS----HKRQRNAVWFGG 390
Query: 385 AIFAATESYNKRAIQKDVY 403
++ A T + K Y
Sbjct: 391 SLLAQTPEFGSYCHTKADY 409
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 6e-14
Identities = 75/426 (17%), Positives = 137/426 (32%), Gaps = 100/426 (23%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK--------------------LRNLY 778
+++D G+ Y+K G G+ P + + L +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKR 67
Query: 779 EYKDADDLYG--------------------------LLIEFIRKIFFKYFVTSPKDKRIV 812
+D D G + F ++ FKY P+D +
Sbjct: 68 ATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFL 127
Query: 813 VVESVLTPTVWRNTLAKVLFKHYE----------VLSLLYVPSHLVSLCTLGVNTGLVLD 862
+ E L P R A+++F+ + VL+L S S T TG V+D
Sbjct: 128 LTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAA--SWTSSKVTDRSLTGTVVD 185
Query: 863 IGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDV 922
G ++PV EG + + K + L G+ V ++SLL D + +++
Sbjct: 186 SGDGVTHIIPVAEGYVIGSSIKTMPL-AGRDVTYFVQSLLRDR-------NEPDSSLK-- 235
Query: 923 ENLSDSIIEDIKVCSCFVTT-MERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRET 981
E IK C+V + + + PD + I V G R
Sbjct: 236 ------TAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDV-GFERFL 288
Query: 982 AFEVLFELDLDMLN----IATIILDSLLSVASSDGREE-----------TQY--FPFRCW 1024
A E+ F ++ + + ++ + + S + D R+ T + F R
Sbjct: 289 APEIFFNPEIASSDFLTPLPELVDNVVQS-SPIDVRKGLYKNIVLSGGSTLFKNFGNRLQ 347
Query: 1025 --VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRA 1082
+ E++ S + + ++ W GG++ A T +
Sbjct: 348 RDLKRIVDERIHRSEMLSGAKSGGVDVNVIS----HKRQRNAVWFGGSLLAQTPEFGSYC 403
Query: 1083 IQKDVY 1088
K Y
Sbjct: 404 HTKADY 409
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 8e-13
Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 444 EVLFELDLDMLN----IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
E+ F ++ + + ++ + + + D++K L +NI+L+GG+ + RL ++L
Sbjct: 291 EIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDL 350
Query: 500 RTLI-ESPPYKDKLFIKNFKFHEF----PAKENYVAWLGGAIFAATESYNKRAIQKDAY 553
+ ++ E + L + ++ W GG++ A T + K Y
Sbjct: 351 KRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADY 409
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 4e-15
Identities = 91/680 (13%), Positives = 187/680 (27%), Gaps = 232/680 (34%)
Query: 44 GVVLDIGSKYTKYGIFGSFQPK-GFIKSQVKDPHTNKLRNLYEYKDA-DDLYGLLIEFIR 101
+L + + + + F+ S +K Y + D LY
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-----DN 123
Query: 102 KIFFKYFVTSPK-------------DKRIVVVE-------SVLTPTVWRNTLAKVLFKHY 141
++F KY V+ + + V+++ + + V + Y
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS---------Y 174
Query: 142 EVLSLLYVPSHLVSL--CTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKD----LSLG 195
+V + ++L C + VL++ LL Y+ P + D + L
Sbjct: 175 KVQCKMDFKIFWLNLKNCN---SPETVLEM---LQKLL--YQIDPNWTSRSDHSSNIKLR 226
Query: 196 GQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIE--DIKVCSC 253
S++A +RR + + LL+ L N V++ + ++ C
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLV-----LLN-------VQNAK-----AWNAFNLS-CKI 268
Query: 254 FVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD--LDML-N 310
+TT R ++ L HI + D +L
Sbjct: 269 LLTT--RFKQVTDF-------------LSAATT----THISLDHHSMTLTPDEVKSLLLK 309
Query: 311 IATIILDSLLSVASSDGREETQYFPFRC-WVNTRTPEKLCCLVGWSNICCYKL------F 363
L RE P R + + L W ++ C KL
Sbjct: 310 YLDCRPQDL-------PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 364 IKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPD------WCNLSV 417
+ + E+ ++ + ++F + IP W ++
Sbjct: 363 LNVLEPAEY--RKMFDRL---SVF-----------PPSAH-----IPTILLSLIWFDV-- 399
Query: 418 LGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDLDMLNIATIILDSLLKTGRDMKKPLAE 477
I+ V+ +L SL++ + K+
Sbjct: 400 --------------------IKSDVMVVVNKL----------HKYSLVE--KQPKE---- 423
Query: 478 NILLTGGTAMTPGLKYRLLQEL-------RTLIESPPYKDKLFIKNFKFHEF--PAKENY 528
T P + L +L R++++ Y K F + P + Y
Sbjct: 424 ------STISIPSIYLELKVKLENEYALHRSIVDH--YN---IPKTFDSDDLIPPYLDQY 472
Query: 529 VAWLGGAIFAATESYNKRAIQKDAYLNNNMTYMEFL-------GCTMTAFGPVIAMFLTT 581
G E + + + +L+ FL A G ++
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLD-----FRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 582 IM-------QDPVKVIILVASAFAWLLSLLLSSIVWFVIRYQCNIIFGVVISVLCQEAFR 634
DP L+++I+ F+ + + N+I +
Sbjct: 528 KFYKPYICDNDPK-------------YERLVNAILDFLPKIEENLI---------CSKYT 565
Query: 635 YILYLILQKSRGGLQYVSDR 654
+L + L + + +
Sbjct: 566 DLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 2e-09
Identities = 95/591 (16%), Positives = 172/591 (29%), Gaps = 181/591 (30%)
Query: 608 IVWFVIRYQCNIIFGVVISVLCQEAFRYILYLI----LQKSRGGLQYVSDRNTMDNT--- 660
+ W ++ Q ++ V VL + +++++ I Q S Y+ R+ + N
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 661 YAMAYVSGLGYGTISAAFSLLNVLDQV-SGPGTM--GLKGESQYFGFTT--------SIF 709
+A VS + L L ++ + G+ G G T
Sbjct: 126 FAKYNVS-----RLQPYLKLRQALLELRPAKNVLIDGVLG----SGKTWVALDVCLSYKV 176
Query: 710 TCCFSLLHVFWSIVFFRGVEIKNRTLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDP 769
C +FW + +KN VL++ K Y I ++ + S +K
Sbjct: 177 QCKMD-FKIFW-------LNLKNCN-SPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLR 226
Query: 770 H---TNKLRNLY---EYKDA----DDLYGLLIEFIRKIFFKYF-------VTSPKDKRIV 812
+LR L Y++ ++ K + F +T+ + K++
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQ------NAKA-WNAFNLSCKILLTT-RFKQVT 278
Query: 813 VVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLP 872
S T T + EV SLL LD + LP
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLL----------------LKYLDCRPQD---LP 319
Query: 873 --VYEGVPVLCA---------------WKDLSLGG-GQSVESHIRSLLIDEIKALENPDP 914
V P + WK ++ +ES + L E + +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----- 374
Query: 915 YI---VTVEDV-----------ENLSDSIIEDIKVCSCFVTTM-ERSA------------ 947
+ V ++ S + + V ++ E+
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 948 EIAAKNPD----HK-----YPSGFMYPLKNGKKIPVSG----HI-----------RETAF 983
E+ K + H+ Y + + + HI R T F
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 984 EVLFELDLDMLNIATIILDSLLSVASSDGREETQ----YFPFRCWVNTRTPEKLCCLVGW 1039
++F LD L I DS AS Q Y P+ C N E+L
Sbjct: 494 RMVF-LDFRFLE-QKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DNDPKYERL------ 544
Query: 1040 SNICCYKLFIKNFKFHEFPAKENYVAWLG-----GAIFAATESYNKRAIQK 1085
+ F+ + + +K + + AIF + +Q+
Sbjct: 545 --VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH----KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 1e-07
Identities = 81/583 (13%), Positives = 152/583 (26%), Gaps = 182/583 (31%)
Query: 281 LKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASS---------DGREET 331
+ + V FE F + D ++ D S+ S
Sbjct: 16 YQYKDILSV--------FEDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 332 QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATE 391
F W E++ + F++ + NY +L I TE
Sbjct: 64 TLRLF--WTLLSKQEEM-----------VQKFVEEV------LRINY-KFLMSPI--KTE 101
Query: 392 SYNKRAIQKDVYLN-----NNVIPDWCNLSV--------LGTDLKK-SVNPY--LH-FPV 434
+ ++ +Y+ N + +V L L + +
Sbjct: 102 -QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 435 SGH-------IRETAFEVLFE-----LDLDMLNIATIILDSLLKTGRDMKKPLAENILLT 482
SG + + L+L N +L+ L K +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-- 218
Query: 483 GGTAMTPGLKYRLLQELRTLIESPPYKDKLFI----------KNFKFHEFPAKENYVAWL 532
++ + + ELR L++S PY++ L + F K
Sbjct: 219 -HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---CK------- 267
Query: 533 GGAIFAATESYNKRAIQKDAYLNNNMTYMEFLGCTMTAFGP-----VIAMFLTTIMQD-P 586
I T R Q +L+ T L P ++ +L QD P
Sbjct: 268 ---ILLTT-----RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 587 VKVIILVASAFAWLLSLLLSSIVWFVIRYQCNIIFGVVISVLCQEAFRYILYLILQKSRG 646
+V+ + SI+ IR + ++++ L
Sbjct: 320 REVL---------TTNPRRLSIIAESIRDGLATW----------DNWKHVNCDKLTT--- 357
Query: 647 GLQYVSDRNTMDNTYAMAYVSGLGYGTISAAFSLLNVLDQVSGPGTMGLKGESQYFGFTT 706
I ++ LNVL+ P +
Sbjct: 358 --------------------------IIESS---LNVLE----PAEY----RKMFDRL-- 378
Query: 707 SIF-------TCCFSLLHVFWSIVFFRGVEIKNRTLKTGVVLDIGSKYTKYGIFGSFQPK 759
S+F T LL + W V V + L +++ K + I +
Sbjct: 379 SVFPPSAHIPT---ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 760 GFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYF 802
H + + Y D L+ ++ + F+ +
Sbjct: 436 KVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 1e-14
Identities = 74/427 (17%), Positives = 143/427 (33%), Gaps = 80/427 (18%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVV---------LDIGSKYTKYGIFGSFQPKGFIKSQVK 73
V+D G+ YTK G G+ +P+ ++ +G + + + G FI +
Sbjct: 8 CVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI 67
Query: 74 DPHTNKLRNLYEY---KDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWR 130
+ T + + +D D + + ++ FKY P+D ++ E L R
Sbjct: 68 EKPTYATKWPIRHGIVEDWDLMERFM----EQVIFKYLRAEPEDHYFLLTEPPLNTPENR 123
Query: 131 NTLAKVLFKHYEVLSLLYVPSHLVSLCTLG--------VNTGLVLDIGYSEATLLPVYEG 182
A+++F+ + V L +++L TG V+D G ++PV EG
Sbjct: 124 EYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEG 183
Query: 183 VPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSD 242
+ K + + G+ + I + L + + I + +E
Sbjct: 184 YVIGSCIKHIPIAGRDITYFI-----------------QQLLRDREVGIPPEQSLE---- 222
Query: 243 SIIEDIK-----VCSCFVTTMERSAEIAAKNP-DHKYPSGFMYPLKNGKKIPVSGHIRET 296
+ +K VC V + +K + + K I V G+ R
Sbjct: 223 -TAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINA---ISKKEFSIDV-GYERFL 277
Query: 297 AFEVLFELDL----DMLNIATIILDSLLSVASSDGREE-----------TQY--FPFRCW 339
E+ F + I+ ++ + + + D R T + F R
Sbjct: 278 GPEIFFHPEFANPDFTQPISEVVDEVIQN-CPIDVRRPLYKNIVLSGGSTMFRDFGRRLQ 336
Query: 340 --VNTRTPEKLCCLVGWSNICCYKLFIKNFKFH-EFPAKENYVAWLGGAIFAATESYNKR 396
+ +L S +L K + Y W GG++ A+T + +
Sbjct: 337 RDLKRTVDARLKLSEELSGG---RLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQV 393
Query: 397 AIQKDVY 403
K Y
Sbjct: 394 CHTKKDY 400
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-14
Identities = 73/414 (17%), Positives = 134/414 (32%), Gaps = 85/414 (20%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN-----KLRNLYEYKDADDLY------ 787
V+D G+ YTK G G+ +P+ I S + + R + + D D +
Sbjct: 8 CVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI 67
Query: 788 ---GLLI----------------EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 828
F+ ++ FKY P+D ++ E L R A
Sbjct: 68 EKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 127
Query: 829 KVLFKHYEVLSLLYVPSHLVSLCTLG--------VNTGLVLDIGYSEATLLPVYEGVPVL 880
+++F+ + V L +++L TG V+D G ++PV EG +
Sbjct: 128 EIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIG 187
Query: 881 CAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK-----V 935
K + + G I + + L + + I + +E + +K V
Sbjct: 188 SCIKHIPIAG-----RDITYFI---QQLLRDREVGIPPEQSLE-----TAKAVKERYSYV 234
Query: 936 CSCFVTTMERSAEIAAKNP-DHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL--- 991
C V + +K + + K I V G+ R E+ F +
Sbjct: 235 CPDLVKEFNKYDTDGSKWIKQYTGINA---ISKKEFSIDV-GYERFLGPEIFFHPEFANP 290
Query: 992 -DMLNIATIILDSLLSVASSDGREE-----------TQY--FPFRCW--VNTRTPEKLCC 1035
I+ ++ + + + D R T + F R + +L
Sbjct: 291 DFTQPISEVVDEVIQN-CPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKL 349
Query: 1036 LVGWSNICCYKLFIKNFKFH-EFPAKENYVAWLGGAIFAATESYNKRAIQKDVY 1088
S +L K + Y W GG++ A+T + + K Y
Sbjct: 350 SEELSGG---RLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDY 400
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 444 EVLFELDL----DMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQEL 499
E+ F + I+ ++ + + D+++PL +NI+L+GG+ M RL ++L
Sbjct: 280 EIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDL 339
Query: 500 RTLIESPPYK------DKLFIKNFKFH-EFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
+ +++ +L K + Y W GG++ A+T + + K
Sbjct: 340 KRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKD 399
Query: 553 Y 553
Y
Sbjct: 400 Y 400
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1107 | |||
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 100.0 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 100.0 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 100.0 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 100.0 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 100.0 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 100.0 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 100.0 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 100.0 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 100.0 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 100.0 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 100.0 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 100.0 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 100.0 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 99.92 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 99.83 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.67 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 99.61 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 99.58 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 99.51 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.43 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 99.41 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 99.28 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 99.24 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 99.14 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 99.13 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.09 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 99.07 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 99.02 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 98.98 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 98.9 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 98.64 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 98.43 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 98.4 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 98.35 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 98.23 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 98.22 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 98.22 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 98.2 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 98.16 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 98.16 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 98.14 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 98.11 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 97.82 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 97.46 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 97.28 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 97.27 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 96.27 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 96.0 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 95.68 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 91.72 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 91.17 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 90.38 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 89.55 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 88.71 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 88.3 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 86.25 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 85.77 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 85.36 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 85.26 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 83.99 | |
| 3aap_A | 353 | Ectonucleoside triphosphate diphosphohydrolase I; | 82.56 |
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-66 Score=613.81 Aligned_cols=405 Identities=19% Similarity=0.231 Sum_probs=302.0
Q ss_pred CCCCCCeEEEecCCceeEEeeecCcccccccccceeccCCccccceeccC------------------chhhHHHHHHHH
Q psy9135 38 GSFQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYK------------------DADDLYGLLIEF 99 (1107)
Q Consensus 38 ~~~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~~~~~~~~------------------~~~~~~~~le~i 99 (1107)
|.++.++||||+||++||+||+|++.|+.++||+||+++....+..++|+ +.+.+|+++|.+
T Consensus 19 ggde~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dwd~~E~i 98 (498)
T 3qb0_A 19 GGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQ 98 (498)
T ss_dssp CCCCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGGGSCCTTEEEEESEETTEESCHHHHHHH
T ss_pred CCCCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHHhcCcCceEEeccCcCCEEccHHHHHHH
Confidence 46788899999999999999999999999999999998754223334443 445679999999
Q ss_pred HHHHHhhccccCCCCC-eEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEEEE
Q psy9135 100 IRKIFFKYFVTSPKDK-RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLP 178 (1107)
Q Consensus 100 ~~~~~~~~L~~~~~~~-~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V~P 178 (1107)
|+|+|++.|++++.++ |||||||+++++..|++|+|++||+|++|+++++.+++|++|++|++||||||+|++.|+|+|
T Consensus 99 w~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvP 178 (498)
T 3qb0_A 99 WQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSP 178 (498)
T ss_dssp HHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEE
T ss_pred HHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEE
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCC----------------CCCccccccccCC-C
Q psy9135 179 VYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENP----------------DPYIVTVEDVENL-S 241 (1107)
Q Consensus 179 V~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~----------------~~~~~~~~~~~~~-~ 241 (1107)
|++|+++.++++++++||+++|++|.++ |++.+.. +++..+.+...+. +
T Consensus 179 I~~G~~l~~ai~rl~vgG~~lt~~L~~l--------------L~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~ 244 (498)
T 3qb0_A 179 IVDGMTLSKSTRRNFIAGKFINHLIKKA--------------LEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANN 244 (498)
T ss_dssp EETTEECGGGCEEESCSHHHHHHHHHHH--------------TTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHH
T ss_pred EeCCEEccccceeccccHHHHHHHHHHH--------------HHhccccchhhhcccccccccccCCCccCccHHHHHHH
Confidence 9999999999999999999999999999 5443211 1111111111112 3
Q ss_pred HHHHHHHHHhceeeccc-hhHHHHHhcCCCCCCCCCeeeecCCCcccccCccc-hhhhhhhhcchhhhhhhHHHHHHhhh
Q psy9135 242 DSIIEDIKVCSCFVTTM-ERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHI-RETAFEVLFELDLDMLNIATIILDSL 319 (1107)
Q Consensus 242 ~~~~e~iKe~~c~v~~~-~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~-r~~~~e~lF~~~~~~~~~~~~~~~~~ 319 (1107)
..++++|||++|||+.. ..+.+..... ....+.|+||||+.|.+ |.+ |+.++|.||+|........+
T Consensus 245 ~~iv~~iKE~~c~Va~~~~~~~~~~~~~----~~~~~~yeLPDG~~i~l-g~E~Rf~~pE~LF~P~~~g~~~~~------ 313 (498)
T 3qb0_A 245 RGFFQECKETLCHICPTKTLEETKTELS----STAKRSIESPWNEEIVF-DNETRYGFAEELFLPKEDDIPANW------ 313 (498)
T ss_dssp HTHHHHHHHHTCCCCSSCHHHHHHHHHH----TCCCEEEECSSSCEEEE-CHHHHHHHHHTTTSCCGGGSCTTS------
T ss_pred HHHHHHHHHhhEEecCCccHhHHhhhcc----CcCceEEECCCCCEEEE-CchHhhhCchhhCCHhHcCCcccc------
Confidence 45899999999999974 2222211111 14578999999999999 566 99999999999862100000
Q ss_pred hhcccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccc
Q psy9135 320 LSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQ 399 (1107)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 399 (1107)
..+.+
T Consensus 314 --~~~~~------------------------------------------------------------------------- 318 (498)
T 3qb0_A 314 --PRSNS------------------------------------------------------------------------- 318 (498)
T ss_dssp --CCCSS-------------------------------------------------------------------------
T ss_pred --ccccc-------------------------------------------------------------------------
Confidence 00000
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCCCC---cccccCCccccccccc---ccC--------------------CCCCC
Q psy9135 400 KDVYLNNNVIPDWCNLSVLGTDLKKSVNPY---LHFPVSGHIRETAFEV---LFE--------------------LDLDM 453 (1107)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~er~~~pE~---lF~--------------------p~~~~ 453 (1107)
....+|.+.....++.+...... ........|.+..||. +|+ ...+.
T Consensus 319 -------~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (498)
T 3qb0_A 319 -------GVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNEL 391 (498)
T ss_dssp -------SCCCCCSCCCCCCCBCC-----------------------------------------------------CCS
T ss_pred -------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 00011111111111101000000 0000001222223322 121 12367
Q ss_pred CCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCC--CCCccccc
Q psy9135 454 LNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFP--AKENYVAW 531 (1107)
Q Consensus 454 ~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~--~~~~~~aW 531 (1107)
.||+++|.+||++||.|+|+.|++||||+||+|++|||.+||++||+.+.|. .+++|++++ .+|.+++|
T Consensus 392 ~Gi~e~i~~sI~~cd~d~r~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p~---------~~i~v~~~~~~~er~~s~W 462 (498)
T 3qb0_A 392 IGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS---------LKFRILTTGHTIERQYQSW 462 (498)
T ss_dssp CCHHHHHHHHHHTSCTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSTT---------SCCCEECCSCTGGGGSHHH
T ss_pred CCchHHHHHHHHhCCHHHHHHHhcCEEEeCCccCchhHHHHHHHHHHHhCCC---------CeeEEEcCCCCCccCccEE
Confidence 8999999999999999999999999999999999999999999999999982 378898762 38999999
Q ss_pred hhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 532 LGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 532 ~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
+||||||++++|+++||||+||+|+|+
T Consensus 463 iGgsilasl~~f~~~witk~EY~E~G~ 489 (498)
T 3qb0_A 463 LGGSILTSLGTFHQLWVGKKEYEEVGV 489 (498)
T ss_dssp HHHHHHHTCHHHHHTSEEHHHHHTTCC
T ss_pred cccEEEecCcchhceEEEHHHHhhhCc
Confidence 999999999999999999999999997
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-65 Score=602.35 Aligned_cols=344 Identities=20% Similarity=0.335 Sum_probs=278.9
Q ss_pred CCCeEEEecCCceeEEeeecCcccccccccceeccCCcc----------------------------ccceeccCch---
Q psy9135 41 QPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK----------------------------LRNLYEYKDA--- 89 (1107)
Q Consensus 41 ~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~----------------------------~~~~~~~~~~--- 89 (1107)
+.++|||||||++||+||||++.|+++|||+||+++... .++.++|+++
T Consensus 4 ~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~~ 83 (427)
T 3dwl_A 4 FNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKK 83 (427)
T ss_dssp CCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHHT
T ss_pred CCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhhC
Confidence 568999999999999999999999999999999987430 0245555533
Q ss_pred ---------------hhHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhh
Q psy9135 90 ---------------DDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLV 154 (1107)
Q Consensus 90 ---------------~~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~ll 154 (1107)
+.+|+++|++|+|+|++.|++++.+||+|||||+++++..|++|+|++||+|++|+++++.++++
T Consensus 84 ~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vl 163 (427)
T 3dwl_A 84 ASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVL 163 (427)
T ss_dssp HHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHH
T ss_pred cccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC--------CceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCC
Q psy9135 155 SLCTLG--------VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALEN 226 (1107)
Q Consensus 155 s~y~~g--------~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~ 226 (1107)
|+|++| .+||||||+|++.|+|+||++|+++.++++++++||+++|++|.++ |+++++
T Consensus 164 a~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~l--------------L~~~~~ 229 (427)
T 3dwl_A 164 ALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSL--------------LRDRNE 229 (427)
T ss_dssp HHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHT--------------TC----
T ss_pred HHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHH--------------HHHcCC
Confidence 999998 6899999999999999999999999999999999999999999999 555543
Q ss_pred CCCCccccccccCCCHHHHHHHHHhceeeccch-hHHHHHhcCCCCCCCCCeeeec--CCCcccccCccchhhhhhhhcc
Q psy9135 227 PDPYIVTVEDVENLSDSIIEDIKVCSCFVTTME-RSAEIAAKNPDHKYPSGFMYPL--KNGKKIPVSGHIRETAFEVLFE 303 (1107)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~~~~-~~~~~~~~~~~~~~~~~~~y~L--pd~~~i~i~~~~r~~~~e~lF~ 303 (1107)
. ..+.+++|+|||++|||+.+. .+.+...... ...+.|+| |||..
T Consensus 230 ~-----------~~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~----~~~~~~~l~~~~g~~----------------- 277 (427)
T 3dwl_A 230 P-----------DSSLKTAERIKEECCYVCPDIVKEFSRFDREP----DRYLKYASESITGHS----------------- 277 (427)
T ss_dssp ---------------CHHHHHHHHHHCCCCSCHHHHHHHTTC---------CCBCC------------------------
T ss_pred C-----------chhHHHHHHHHHhcCcccCCHHHHHHHhhcCc----cccceeEeeCCCCCe-----------------
Confidence 2 245789999999999999643 2222111100 01122322 22221
Q ss_pred hhhhhhhHHHHHHhhhhhcccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcc
Q psy9135 304 LDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLG 383 (1107)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1107)
T Consensus 278 -------------------------------------------------------------------------------- 277 (427)
T 3dwl_A 278 -------------------------------------------------------------------------------- 277 (427)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccchhhccccccccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCC---CCC-CCCHHHH
Q psy9135 384 GAIFAATESYNKRAIQKDVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLD-MLNIATI 459 (1107)
Q Consensus 384 ~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~-~~gL~e~ 459 (1107)
+.+.++.|||++||+||+| +.+ ..||+++
T Consensus 278 -----------------------------------------------~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~ 310 (427)
T 3dwl_A 278 -----------------------------------------------TTIDVGFERFLAPEIFFNPEIASSDFLTPLPEL 310 (427)
T ss_dssp -------------------------------------------------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHH
T ss_pred -----------------------------------------------eEEEEChHhhhChhhccCchhcCCccCCCccHH
Confidence 1233588999999999999 456 4899999
Q ss_pred HHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCcccc------ccceeEEEEcCCCCCccccchh
Q psy9135 460 ILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDK------LFIKNFKFHEFPAKENYVAWLG 533 (1107)
Q Consensus 460 I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~------~~~~~v~v~~~~~~~~~~aW~G 533 (1107)
|.++|++||+|+|++|++|||||||+|++|||.+||++||+.+.+....... ....+++|.+++ +|.|++|+|
T Consensus 311 i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~-~r~~s~WiG 389 (427)
T 3dwl_A 311 VDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHK-RQRNAVWFG 389 (427)
T ss_dssp HHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCT-TCTTHHHHH
T ss_pred HHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCC-ccccceecC
Confidence 9999999999999999999999999999999999999999999863210000 113478999877 999999999
Q ss_pred HHhhcCCcccccccccHHHHHhcCC
Q psy9135 534 GAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 534 gsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
|||||++++|+++||||+||+|+|+
T Consensus 390 GSilasl~~f~~~witk~EYeE~G~ 414 (427)
T 3dwl_A 390 GSLLAQTPEFGSYCHTKADYEEYGA 414 (427)
T ss_dssp HHHHHHSTTHHHHSEEHHHHHHSCG
T ss_pred ceeeccccchhheeEEHHHHhhhCh
Confidence 9999999999999999999999998
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-63 Score=609.78 Aligned_cols=368 Identities=16% Similarity=0.163 Sum_probs=254.5
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCC---CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEE
Q psy9135 89 ADDLYGLLIEFIRKIFFKYFVTSPKD---KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGL 165 (1107)
Q Consensus 89 ~~~~~~~le~i~~~~~~~~L~~~~~~---~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tgl 165 (1107)
.+.+|++||.+|+|+|.+.|++++++ ||||||||+++++.+|++|+|+|||+|+||+++++++++||+||+|++|||
T Consensus 170 ~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tgl 249 (593)
T 4fo0_A 170 LTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTC 249 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEE
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceE
Confidence 56789999999999999999998866 999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHH
Q psy9135 166 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSII 245 (1107)
Q Consensus 166 VVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1107)
|||+|++.|+|+||+||+++.++++++++||+++|++|.++ |+.++.+..... .....+..++
T Consensus 250 VVDiG~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~l--------------L~~~~~~~~~~~---~~~~~d~~~v 312 (593)
T 4fo0_A 250 IVDVGDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWL--------------MQRAGFPYRECQ---LTNKMDCLLL 312 (593)
T ss_dssp EEEECSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHH--------------HHHTTCSCTTCC---TTCHHHHHHH
T ss_pred EEEeCCCceeeeeeECCEEehhheEEecccHHHHHHHHHHH--------------HHhcCCCccccc---cccchhHHHH
Confidence 99999999999999999999999999999999999999999 777664432110 0123467899
Q ss_pred HHHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCccc----ccCccchhhhhhhhcchhhhhhhHHHHHHhhhhh
Q psy9135 246 EDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKI----PVSGHIRETAFEVLFELDLDMLNIATIILDSLLS 321 (1107)
Q Consensus 246 e~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i----~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~ 321 (1107)
++|||++|||+.+....+ .....+.+|++... .+ +.++..+++.+|+|........
T Consensus 313 ~~iKe~~c~v~~d~~~~~----------~~~~~~~~p~~~~~~~~~~~-~~E~~~~p~~lf~p~~~~~~~~--------- 372 (593)
T 4fo0_A 313 QHLKETFCHLDQDISGLQ----------DHEFQIRHPDSPALLYQFRL-GDEKLQAPMALFYPATFGIVGQ--------- 372 (593)
T ss_dssp HHHHHHHCBCCTTCCSCE----------EEEEEECCTTSCEEEEEEEE-CTHHHHHHHTTTSGGGGCCCSS---------
T ss_pred HHHHHHhcccccchHHhh----------hhhhhcccCCCCceeeEEec-cchhhcCchhhcChhhhccccc---------
Confidence 999999999996432211 22345566666543 23 6678899999999986321000
Q ss_pred cccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccc
Q psy9135 322 VASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKD 401 (1107)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 401 (1107)
.. . ..........+++.....+... ........
T Consensus 373 -------~~--------------~---------------~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--- 405 (593)
T 4fo0_A 373 -------KM--------------T---------------TLQHRSQGDPEDPHDEHYLLAT--------QSKQEQSA--- 405 (593)
T ss_dssp -------CC--------------E---------------EECC-------------------------------------
T ss_pred -------cc--------------c---------------hhhhhcccCcccchhhhhhhhc--------ccchhhhh---
Confidence 00 0 0000000000111100000000 00000000
Q ss_pred cccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCCC------------------------------
Q psy9135 402 VYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDL------------------------------ 451 (1107)
Q Consensus 402 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~------------------------------ 451 (1107)
......+....|+++...++.+|+.+||.+|+|..
T Consensus 406 ---------------~~~~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (593)
T 4fo0_A 406 ---------------KATADRKSASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAI 470 (593)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------hcccccccccCCCCcccccccccccCchhccCccccccccccccccccccccccccccccccccc
Confidence 00001112233455566678999999999999831
Q ss_pred -----CCCCHHHHHHHHHhccC-ccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCC-
Q psy9135 452 -----DMLNIATIILDSLLKTG-RDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPA- 524 (1107)
Q Consensus 452 -----~~~gL~e~I~~sI~~~~-~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~- 524 (1107)
+..||+++|.+||.+|| .|+|+.|++|||||||+|++|||.+||++||+.+.|.. +. ....+++|+++|.
T Consensus 471 ~~~~~~~~gL~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~-~~--~~~~~v~v~~~p~~ 547 (593)
T 4fo0_A 471 SLFEGKALGLDKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPS-FR--RIIENVDVITRPKD 547 (593)
T ss_dssp CHHHHSCCCHHHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHH-HH--HHSSCCEEESSGGG
T ss_pred ccccccCCCHHHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcch-hc--cccceEEEECCCCC
Confidence 35799999999999998 59999999999999999999999999999999998852 10 0123689998763
Q ss_pred -CCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 525 -KENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 525 -~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
||++++|+||||||+|++|+++||||+||+|+|+
T Consensus 548 ~d~~~~aW~GgSilasL~~f~~~wItk~EYeE~G~ 582 (593)
T 4fo0_A 548 MDPRLIAWKGGAVLACLDTTQELWIYQREWQRFGV 582 (593)
T ss_dssp CCTTTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTT
T ss_pred CCCceeeehhhHHHhcCccHHHeeECHHHHHhhCc
Confidence 7999999999999999999999999999999998
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-61 Score=572.49 Aligned_cols=343 Identities=16% Similarity=0.188 Sum_probs=287.3
Q ss_pred cccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeec------------------CCHHhhHHHHHHHHH
Q psy9135 734 TLKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEY------------------KDADDLYGLLIEFIR 795 (1107)
Q Consensus 734 ~~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~------------------~~~~~~~d~le~i~~ 795 (1107)
++.++||||+||++||+||+|++.|+.++||++|+++....+..++| +|.+.|||+++++|+
T Consensus 21 de~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dwd~~E~iw~ 100 (498)
T 3qb0_A 21 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQ 100 (498)
T ss_dssp CCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCSSCCEECCTTGGGSCCTTEEEEESEETTEESCHHHHHHHHH
T ss_pred CCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCCCccEEEecHHHhcCcCceEEeccCcCCEEccHHHHHHHHH
Confidence 45579999999999999999999999999999999865422222322 367788999999999
Q ss_pred HHHHhccccCCCCc-eEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEE
Q psy9135 796 KIFFKYFVTSPKDK-RIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVY 874 (1107)
Q Consensus 796 ~~~~~~L~~~~~~~-~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~ 874 (1107)
|+|++.|+++|+++ ||||+||+++++..|++++|++||+|++|+++++.+++||+||+|++||+|||+|++.|+|+||+
T Consensus 101 ~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g~T~vvPI~ 180 (498)
T 3qb0_A 101 WALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIV 180 (498)
T ss_dssp HHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSSCEEEEEEE
T ss_pred HHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCCcEEEEEEe
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEeeccceEEEeccchHHHHHHHHHHHHhhccc----CC---C---CCCCccchhhh-hc-c-cHHHHHHHHHhceeec
Q psy9135 875 EGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKA----LE---N---PDPYIVTVEDV-EN-L-SDSIIEDIKVCSCFVT 941 (1107)
Q Consensus 875 dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~----~~---~---~~~~~~~~~~~-~~-l-~~~~v~~iKe~~c~v~ 941 (1107)
+|++++++++++++| |+++|++|.++|++++.. ++ + ...+.++..+. .. . ..+++++|||++|||+
T Consensus 181 ~G~~l~~ai~rl~vg-G~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va 259 (498)
T 3qb0_A 181 DGMTLSKSTRRNFIA-GKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHIC 259 (498)
T ss_dssp TTEECGGGCEEESCS-HHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCC
T ss_pred CCEEccccceecccc-HHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHHHhhEEec
Confidence 999999999999999 999999999999875410 00 0 00011111000 00 1 2348999999999999
Q ss_pred cc-hHHHHHHhcCCCCCCCCceEEeCCCCCEEEecccc-cccccccccCCC---C-------------------------
Q psy9135 942 TM-ERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHI-RETAFEVLFELD---L------------------------- 991 (1107)
Q Consensus 942 ~~-~~~~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~e-rf~~~E~LF~P~---~------------------------- 991 (1107)
.+ ..+.+..... ....+.|+||||+.|.+ |.| ||++||+||+|+ .
T Consensus 260 ~~~~~~~~~~~~~----~~~~~~yeLPDG~~i~l-g~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~~~~~ 334 (498)
T 3qb0_A 260 PTKTLEETKTELS----STAKRSIESPWNEEIVF-DNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVPLKRT 334 (498)
T ss_dssp SSCHHHHHHHHHH----TCCCEEEECSSSCEEEE-CHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCCCCBC
T ss_pred CCccHhHHhhhcc----CcCceEEECCCCCEEEE-CchHhhhCchhhCCHhHcCCccccccccccccccccccccccccc
Confidence 86 2222211110 14568999999999999 899 999999999995 1
Q ss_pred -------------------------------------------------------CCCcHHHHHHHHHHcCCcccccccC
Q psy9135 992 -------------------------------------------------------DMLNIATIILDSLLSVASSDGREET 1016 (1107)
Q Consensus 992 -------------------------------------------------------~~~gL~~~I~~sI~~~~~~d~r~~L 1016 (1107)
+..||+++|.+||++|| +|+|+.|
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd-~d~r~~L 413 (498)
T 3qb0_A 335 KPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSD-VDLRATL 413 (498)
T ss_dssp C-----------------------------------------------------CCSCCHHHHHHHHHHTSC-TTTHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCC-HHHHHHH
Confidence 45789999999999999 9999998
Q ss_pred -------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeC--CCCcceehhhhHHHhhcCCCccce
Q psy9135 1017 -------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEF--PAKENYVAWLGGAIFAATESYNKR 1081 (1107)
Q Consensus 1017 -------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~--~~~~~~~aW~GgSIlasl~~f~~~ 1081 (1107)
||| .+||++||+.+.| . .+++|..+ +++|.+++|+||||||+|++|+++
T Consensus 414 ~~nIvLsGGst~~pGf------~~Rl~~El~~l~p-~---------~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~ 477 (498)
T 3qb0_A 414 AHNVVLTGGTSSIPGL------SDRLMTELNKILP-S---------LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQL 477 (498)
T ss_dssp HTTEEEESGGGGSTTH------HHHHHHHHHHHST-T---------SCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHT
T ss_pred hcCEEEeCCccCchhH------HHHHHHHHHHhCC-C---------CeeEEEcCCCCCccCccEEcccEEEecCcchhce
Confidence 999 9999999999988 2 24677643 268999999999999999999999
Q ss_pred eeeHHHHhhcCC--ccceec
Q psy9135 1082 AIQKDVYLNNNV--IPDWCN 1099 (1107)
Q Consensus 1082 ~ITk~eYeE~G~--i~d~~~ 1099 (1107)
||||+||+|+|+ |++++|
T Consensus 478 witk~EY~E~G~~~iv~~kc 497 (498)
T 3qb0_A 478 WVGKKEYEEVGVERLLNDRF 497 (498)
T ss_dssp SEEHHHHHTTCCHHHHHHTT
T ss_pred EEEHHHHhhhCcHhhccccC
Confidence 999999999997 888766
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-61 Score=563.27 Aligned_cols=337 Identities=21% Similarity=0.315 Sum_probs=274.4
Q ss_pred ccceEEEecCcceEEEeccCCCCccEEEecceeccCCC----------------------C------ccceeecC-----
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN----------------------K------LRNLYEYK----- 781 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~----------------------~------~~~~~~~~----- 781 (1107)
..++||||+||++||+|||||+.|+.+|||++|+++.. . .++.++|+
T Consensus 4 ~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~~ 83 (427)
T 3dwl_A 4 FNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKK 83 (427)
T ss_dssp CCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHHT
T ss_pred CCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhhC
Confidence 34789999999999999999999999999999998743 0 02445543
Q ss_pred -------------CHHhhHHHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchh
Q psy9135 782 -------------DADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLV 848 (1107)
Q Consensus 782 -------------~~~~~~d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~l 848 (1107)
|.+.|||.+|++|+|+|++.|+++|+++||+++||+++++..|++++|++||+|++|+++++.++++
T Consensus 84 ~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vl 163 (427)
T 3dwl_A 84 ASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVL 163 (427)
T ss_dssp HHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHH
T ss_pred cccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHH
Confidence 5567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccC--------CceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchh
Q psy9135 849 SLCTLG--------VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVE 920 (1107)
Q Consensus 849 alya~g--------~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~ 920 (1107)
|+|++| ++||+|||+|++.|+|+||++|++++++++++++| |+++|++|.++|++++. .
T Consensus 164 a~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~g-G~~lt~~L~~lL~~~~~--------~---- 230 (427)
T 3dwl_A 164 ALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLA-GRDVTYFVQSLLRDRNE--------P---- 230 (427)
T ss_dssp HHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCC-HHHHHHHHHHTTC-----------------
T ss_pred HHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheecccc-HHHHHHHHHHHHHHcCC--------C----
Confidence 999998 68999999999999999999999999999999999 99999999999988761 1
Q ss_pred hhhcccHHHHHHHHHhceeeccchHHHHHHhcCCCCCCCCceEEeC--CCCC--EEEecccccccccccccCCC---CC-
Q psy9135 921 DVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPL--KNGK--KIPVSGHIRETAFEVLFELD---LD- 992 (1107)
Q Consensus 921 ~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~L--pdg~--~i~l~~~erf~~~E~LF~P~---~~- 992 (1107)
..+.+++++|||++|||+.+... +....... + ...+.|++ |||+ .+.+ +.|||++||+||+|+ .+
T Consensus 231 ---~~~~~~~~~IKe~~cyv~~d~~~-e~~~~~~~-~-~~~~~~~l~~~~g~~~~i~i-g~erf~~pE~LF~P~~~g~~~ 303 (427)
T 3dwl_A 231 ---DSSLKTAERIKEECCYVCPDIVK-EFSRFDRE-P-DRYLKYASESITGHSTTIDV-GFERFLAPEIFFNPEIASSDF 303 (427)
T ss_dssp ------CHHHHHHHHHHCCCCSCHHH-HHHHTTC-------CCBCC---------CBC-CTHHHHSGGGGTCGGGTCSSC
T ss_pred ---chhHHHHHHHHHhcCcccCCHHH-HHHHhhcC-c-cccceeEeeCCCCCeeEEEE-ChHhhhChhhccCchhcCCcc
Confidence 12235999999999999987633 33222111 1 22466888 8997 7888 899999999999995 34
Q ss_pred CCcHHHHHHHHHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccc------cceeeEE
Q psy9135 993 MLNIATIILDSLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYK------LFIKNFK 1053 (1107)
Q Consensus 993 ~~gL~~~I~~sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~------~~~~~~~ 1053 (1107)
..+|+++|.++|++|| +|+|+.| ||| .+||++||++++| ....... -...+++
T Consensus 304 ~~gI~~~i~~sI~~c~-~dlr~~L~~nIvLtGG~sl~~G~------~~RL~~El~~l~~-~~~~~~~~~~~~~p~~~~vk 375 (427)
T 3dwl_A 304 LTPLPELVDNVVQSSP-IDVRKGLYKNIVLSGGSTLFKNF------GNRLQRDLKRIVD-ERIHRSEMLSGAKSGGVDVN 375 (427)
T ss_dssp CSCHHHHHHHHHHTSC-HHHHHHHHHCEEEESGGGCSTTT------THHHHHHHHHHHT-TC-------------CCCCC
T ss_pred CCCccHHHHHHHHhCC-HHHHHHHhCCEEEEccCcCCCCh------HHHHHHHHHHhhh-hhccccccccccCCCceeEE
Confidence 4799999999999999 9999998 888 9999999999986 2111000 0112466
Q ss_pred EEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccceecc
Q psy9135 1054 FHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPDWCNL 1100 (1107)
Q Consensus 1054 v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~~~~ 1100 (1107)
|. .+++|+|++|+||||||++++|+++||||+||+|+|+ |++++++
T Consensus 376 v~-~~~~r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~ 422 (427)
T 3dwl_A 376 VI-SHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQI 422 (427)
T ss_dssp EE-CCTTCTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred Ee-cCCccccceecCceeeccccchhheeEEHHHHhhhChHhheeccc
Confidence 75 5669999999999999999999999999999999996 8888765
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=547.45 Aligned_cols=337 Identities=22% Similarity=0.342 Sum_probs=145.1
Q ss_pred CCCeEEEecCCceeEEeeecCcccccccccceeccCCccc--------cceeccC-----------------chhhHHHH
Q psy9135 41 QPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL--------RNLYEYK-----------------DADDLYGL 95 (1107)
Q Consensus 41 ~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~--------~~~~~~~-----------------~~~~~~~~ 95 (1107)
+.++||||+||+++|+||+|++.|+.++||++|+++.... ++.++|+ +.+.+|+.
T Consensus 5 ~~~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dwd~ 84 (394)
T 1k8k_B 5 GRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDD 84 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEecHHH
Confidence 3467899999999999999999999999999998865321 2344443 34567999
Q ss_pred HHHHHHHHH-hhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCce
Q psy9135 96 LIEFIRKIF-FKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEA 174 (1107)
Q Consensus 96 le~i~~~~~-~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T 174 (1107)
++.+|+|+| ++.|+++++++|+++++|+++++.+|++++|++||.|++|++++++++++|+|++|+++|+|||+|+++|
T Consensus 85 ~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T 164 (394)
T 1k8k_B 85 MKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 164 (394)
T ss_dssp ---------------------------------------------------------------------CCEEEECSSCE
T ss_pred HHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCce
Confidence 999999999 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhcee
Q psy9135 175 TLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254 (1107)
Q Consensus 175 ~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~ 254 (1107)
+|+||++|+++.+++.++++||+++|++|.++ |+++++.+. ...+...+|+||+++||
T Consensus 165 ~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~--------------l~~~~~~~~--------~~~~~~~ae~iK~~~~~ 222 (394)
T 1k8k_B 165 HICPVYEGFSLPHLTRRLDIAGRDITRYLIKL--------------LLLRGYAFN--------HSADFETVRMIKEKLCY 222 (394)
T ss_dssp EEECEETTEECSTTCEEESCCHHHHHHHHHHH--------------HHHTTCCCC--------TTTTHHHHHHHHHHHCC
T ss_pred EeeeeECCEEcccceEEeeccHHHHHHHHHHH--------------HHhcCCCCC--------cHHHHHHHHHHHHhhee
Confidence 99999999999999999999999999999999 776654331 22478999999999999
Q ss_pred eccch-hHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccc
Q psy9135 255 VTTME-RSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQY 333 (1107)
Q Consensus 255 v~~~~-~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1107)
++.+. .+.+..... ......|+||||+.+.+
T Consensus 223 v~~d~~~~~~~~~~~----~~~~~~~~lpdg~~i~i-------------------------------------------- 254 (394)
T 1k8k_B 223 VGYNIEQEQKLALET----TVLVESYTLPDGRIIKV-------------------------------------------- 254 (394)
T ss_dssp CCSSHHHHHHHHHHC----STTCEEEECTTSCEEEE--------------------------------------------
T ss_pred EecCHHHHHHhhccC----CcCceEEECCCCCEEEE--------------------------------------------
Confidence 98533 222222211 14457788998877554
Q ss_pred ccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcc
Q psy9135 334 FPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWC 413 (1107)
Q Consensus 334 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~ 413 (1107)
T Consensus 255 -------------------------------------------------------------------------------- 254 (394)
T 1k8k_B 255 -------------------------------------------------------------------------------- 254 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccC
Q psy9135 414 NLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPG 490 (1107)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipG 490 (1107)
+.|||++||+||+| +.+..+|+++|.++|.+||+|+|++|++||+||||+|++||
T Consensus 255 ----------------------~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G 312 (394)
T 1k8k_B 255 ----------------------GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPG 312 (394)
T ss_dssp ----------------------CTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTT
T ss_pred ----------------------CchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCccccccc
Confidence 56888899999998 56788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhc-----------CCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccc-cccccHHHHHhcCC
Q psy9135 491 LKYRLLQELRTLI-----------ESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYN-KRAIQKDAYLNNNM 558 (1107)
Q Consensus 491 f~eRL~~EL~~~~-----------~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~-~~~ITk~eYeE~G~ 558 (1107)
|.+||++||+.+. |. ..+++|.+++ +|.+++|+|||++|++++|+ ++||||+||+|+|+
T Consensus 313 ~~~rl~~el~~~~~~~~~~~~~~~p~--------~~~v~v~~~~-~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~ 383 (394)
T 1k8k_B 313 LPSRLERELKQLYLERVLKGDVEKLS--------KFKIRIEDPP-RRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGV 383 (394)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCCTTC--------CCCC------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhhcccccCCCC--------ceEEEEecCC-CcceeEEhhhHHhhCCcCCccceeecHHHHhhhCH
Confidence 9999999999987 43 2368888766 89999999999999999999 99999999999998
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-57 Score=527.11 Aligned_cols=338 Identities=24% Similarity=0.397 Sum_probs=290.2
Q ss_pred CCCCeEEEecCCceeEEeeecCcccccccccceeccCCccc------cceeccC-----------------chhhHHHHH
Q psy9135 40 FQPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYK-----------------DADDLYGLL 96 (1107)
Q Consensus 40 ~~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~------~~~~~~~-----------------~~~~~~~~l 96 (1107)
++.++||||+||+++|+||+|++.|+.++||++|+++.... ++.++|+ +.+.+|+.+
T Consensus 3 ~~~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~~ 82 (375)
T 2fxu_A 3 DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 82 (375)
T ss_dssp -CCCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHH
T ss_pred CCCceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHHH
Confidence 35678999999999999999999999999999998865431 2334443 344579999
Q ss_pred HHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEEEEEeCCCceEE
Q psy9135 97 IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATL 176 (1107)
Q Consensus 97 e~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tglVVDiG~~~T~V 176 (1107)
+.+|+|+|++.|+++++++++++++|+++++.+|++++|++||.+|++++++++++++|+|++|+++++|||+|+++|+|
T Consensus 83 e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v 162 (375)
T 2fxu_A 83 EKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHN 162 (375)
T ss_dssp HHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEE
T ss_pred HHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEE
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 177 LPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 177 ~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+||++|+++.+++.++++||+++|++|.++ |++++..+. ...+...+++||+++||++
T Consensus 163 ~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~--------------l~~~~~~~~--------~~~~~~~~e~iK~~~~~v~ 220 (375)
T 2fxu_A 163 VPIYEGYALPHAIMRLDLAGRDLTDYLMKI--------------LTERGYSFV--------TTAEREIVRDIKEKLCYVA 220 (375)
T ss_dssp EEEETTEECGGGCEEESCCHHHHHHHHHHH--------------HHHHTCCCC--------SHHHHHHHHHHHHHHCCCC
T ss_pred eEeECCEEeccceEEeccCHHHHHHHHHHH--------------HHhcCCCCC--------cHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999 666553321 1135689999999999998
Q ss_pred cchh-HHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCCCcccccccc
Q psy9135 257 TMER-SAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREETQYFP 335 (1107)
Q Consensus 257 ~~~~-~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (1107)
.... +.+..... ......|+||||+.+.+
T Consensus 221 ~~~~~e~~~~~~~----~~~~~~~~lpdg~~i~i---------------------------------------------- 250 (375)
T 2fxu_A 221 LDFENEMATAASS----SSLEKSYELPDGQVITI---------------------------------------------- 250 (375)
T ss_dssp SSHHHHHHHHHHC----STTCEEEECTTSCEEEE----------------------------------------------
T ss_pred ccHHHHHHhhccc----CccCeEEECCCCCEEEE----------------------------------------------
Confidence 5332 22211111 13457788888877554
Q ss_pred ccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccccccccCCCCCCCcccc
Q psy9135 336 FRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNVIPDWCNL 415 (1107)
Q Consensus 336 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~~~~~ 415 (1107)
T Consensus 251 -------------------------------------------------------------------------------- 250 (375)
T 2fxu_A 251 -------------------------------------------------------------------------------- 250 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChH
Q psy9135 416 SVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492 (1107)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~ 492 (1107)
+.|||++||+||+| +.+..+|+++|.++|++||+|+|+++++||+||||+|++|||.
T Consensus 251 --------------------~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~ 310 (375)
T 2fxu_A 251 --------------------GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIA 310 (375)
T ss_dssp --------------------STHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHH
T ss_pred --------------------ChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHH
Confidence 45778888888887 4567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 493 eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
+||++||..+.|.. .+++|..++ +|.+++|+||+++|++++|+++||||+||+|+|+
T Consensus 311 ~rl~~el~~~~p~~--------~~v~v~~~~-~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~ 367 (375)
T 2fxu_A 311 DRMQKEITALAPST--------MKIKIIAPP-ERKYSVWIGGSILASLSTFQQMWITKQEYDEAGP 367 (375)
T ss_dssp HHHHHHHHHHSCTT--------CCCCEECCT-TTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCG
T ss_pred HHHHHHHHHhCCCC--------eeEEEEcCC-CCCccEEcchHHhhCcccHhhceeeHHHHhhhCh
Confidence 99999999998863 367888766 8999999999999999999999999999999997
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-56 Score=548.57 Aligned_cols=299 Identities=14% Similarity=0.149 Sum_probs=221.0
Q ss_pred HHhhHHHHHHHHHHHHHhccccCCCC---ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEE
Q psy9135 783 ADDLYGLLIEFIRKIFFKYFVTSPKD---KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGL 859 (1107)
Q Consensus 783 ~~~~~d~le~i~~~~~~~~L~~~~~~---~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tgl 859 (1107)
.+.+||+||++|+|+|++.|++++++ |||||+||+++++..|++|+|+|||+|+||+++++++++||+||+|++|||
T Consensus 170 ~~~~wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tgl 249 (593)
T 4fo0_A 170 LTAVLADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTC 249 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEE
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceE
Confidence 67899999999999999999998876 999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhcee
Q psy9135 860 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 939 (1107)
Q Consensus 860 VVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~ 939 (1107)
|||+|++.|+|+||+||++++++++++++| |++||++|+++|++++.+.... ... ...+.+++++|||++||
T Consensus 250 VVDiG~~~T~v~PV~dG~~l~~~~~rl~~G-G~~lt~~L~~lL~~~~~~~~~~---~~~----~~~d~~~v~~iKe~~c~ 321 (593)
T 4fo0_A 250 IVDVGDQKTSVCCVEDGVSHRNTRLCLAYG-GSDVSRCFYWLMQRAGFPYREC---QLT----NKMDCLLLQHLKETFCH 321 (593)
T ss_dssp EEEECSSCEEEEEEESSCBCGGGCEEESCC-HHHHHHHHHHHHHHTTCSCTTC---CTT----CHHHHHHHHHHHHHHCB
T ss_pred EEEeCCCceeeeeeECCEEehhheEEeccc-HHHHHHHHHHHHHhcCCCcccc---ccc----cchhHHHHHHHHHHhcc
Confidence 999999999999999999999999999999 9999999999999987321110 000 11234699999999999
Q ss_pred eccchHHHH-------------------------HHh-------------------------------------------
Q psy9135 940 VTTMERSAE-------------------------IAA------------------------------------------- 951 (1107)
Q Consensus 940 v~~~~~~~~-------------------------~~~------------------------------------------- 951 (1107)
|+.+....+ ...
T Consensus 322 v~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (593)
T 4fo0_A 322 LDQDISGLQDHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQ 401 (593)
T ss_dssp CCTTCCSCEEEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC----------------------
T ss_pred cccchHHhhhhhhhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccch
Confidence 985431100 000
Q ss_pred cCCCCCCCCceEEeCCCCCEEEecccccccccccccCCCC-----------------------------------CCCcH
Q psy9135 952 KNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDL-----------------------------------DMLNI 996 (1107)
Q Consensus 952 ~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~~-----------------------------------~~~gL 996 (1107)
............|++|||+.+.+ +.+|+.+||.||+|.. +..||
T Consensus 402 ~~~~~~~~~~~~~~~p~g~~~~~-~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL 480 (593)
T 4fo0_A 402 EQSAKATADRKSASKPIGFEGDL-RGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGL 480 (593)
T ss_dssp ----------------------------------------------------------------------CHHHHSCCCH
T ss_pred hhhhhcccccccccCCCCccccc-ccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCH
Confidence 00000012346788999999999 8999999999999942 24699
Q ss_pred HHHHHHHHHcCCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCC--CCc
Q psy9135 997 ATIILDSLLSVASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFP--AKE 1061 (1107)
Q Consensus 997 ~~~I~~sI~~~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~--~~~ 1061 (1107)
+++|.+||.+|+..|+|+.| ||| .+||++||+.+.| .. + ......++|+.++ .+|
T Consensus 481 ~~aI~~SI~~~~~~D~r~~L~~NIvltGG~s~~pGf------~~RL~~eL~~~~p-~~-~--~~~~~~v~v~~~p~~~d~ 550 (593)
T 4fo0_A 481 DKAILHSIDCCSSDDTKKKMYSSILVVGGGLMFHKA------QEFLQHRILNKMP-PS-F--RRIIENVDVITRPKDMDP 550 (593)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHEEEEESSTTCCBTH------HHHHHHHHHHHSC-HH-H--HHHSSCCEEESSGGGCCT
T ss_pred HHHHHHHHHhCCcHHHHHHHhCCEEEEchhhchhcH------HHHHHHHHHHhCc-ch-h--ccccceEEEECCCCCCCC
Confidence 99999999999845999988 888 9999999999998 21 0 1112357887443 389
Q ss_pred ceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccceecc
Q psy9135 1062 NYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPDWCNL 1100 (1107)
Q Consensus 1062 ~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~~~~ 1100 (1107)
++++|+||||||+|++|+++||||+||+|+|+ |++++|+
T Consensus 551 ~~~aW~GgSilasL~~f~~~wItk~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 551 RLIAWKGGAVLACLDTTQELWIYQREWQRFGVRMLRERAA 590 (593)
T ss_dssp TTHHHHHHHHHHHCGGGGGTCEEHHHHHHHTTHHHHHHCS
T ss_pred ceeeehhhHHHhcCccHHHeeECHHHHHhhCcHHHhhcCC
Confidence 99999999999999999999999999999997 9888885
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-54 Score=508.63 Aligned_cols=350 Identities=21% Similarity=0.310 Sum_probs=285.4
Q ss_pred CCCeEEEecCCceeEEeeecCcccccccccceeccCCcc--------------ccceeccCch----------------h
Q psy9135 41 QPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK--------------LRNLYEYKDA----------------D 90 (1107)
Q Consensus 41 ~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~--------------~~~~~~~~~~----------------~ 90 (1107)
..++||||+||+++|+||+|++.|+.++||++++++... ..++++|+++ +
T Consensus 4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~pi~~G~i 83 (418)
T 1k8k_A 4 RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIV 83 (418)
T ss_dssp CSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTTSEEECCEETTEE
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCCCEEeccccCCEE
Confidence 467899999999999999999999999999999886532 1235555533 4
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhcc---------CCC
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCT---------LGV 161 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~---------~g~ 161 (1107)
.+|+.++.+|+|+|++.|+++++++++++|+|+++++.+|+++.|++||.+|++++++++++++|+|+ .+.
T Consensus 84 ~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~ 163 (418)
T 1k8k_A 84 EDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL 163 (418)
T ss_dssp SCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC
Confidence 57999999999999888999999999999999999999999999999999999999999999999999 566
Q ss_pred ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCC
Q psy9135 162 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLS 241 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 241 (1107)
+|+|||+|+++|+|+||++|+++.+++.++++||+++|++|.++ |++++..++ ...+
T Consensus 164 -~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~--------------l~~~~~~~~--------~~~~ 220 (418)
T 1k8k_A 164 -TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQL--------------LRDREVGIP--------PEQS 220 (418)
T ss_dssp -CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHH--------------HHTTCCCCC--------GGGH
T ss_pred -eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHH--------------HHhcCCCCC--------CHHH
Confidence 99999999999999999999999999999999999999999999 766553321 1235
Q ss_pred HHHHHHHHHhceeeccch-hHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhh
Q psy9135 242 DSIIEDIKVCSCFVTTME-RSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLL 320 (1107)
Q Consensus 242 ~~~~e~iKe~~c~v~~~~-~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~ 320 (1107)
...++++|+++||++... .+.+...... ......|++||+.. +
T Consensus 221 ~~~~e~iK~~~~~v~~~~~~e~~~~~~~~---~~~~~~~~lpd~~~----~----------------------------- 264 (418)
T 1k8k_A 221 LETAKAVKERYSYVCPDLVKEFNKYDTDG---SKWIKQYTGINAIS----K----------------------------- 264 (418)
T ss_dssp HHHHHHHHHHHCCCCSCHHHHHHHHHHSG---GGTCEEEEEECTTT----C-----------------------------
T ss_pred HHHHHHHHHhhchhcccHHHHHHhhcccc---cccceeEECCCCCC----C-----------------------------
Confidence 789999999999998532 2221111110 01235677777653 0
Q ss_pred hcccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhcccc
Q psy9135 321 SVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQK 400 (1107)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 400 (1107)
T Consensus 265 -------------------------------------------------------------------------------- 264 (418)
T 1k8k_A 265 -------------------------------------------------------------------------------- 264 (418)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCC---CCC-CCHHHHHHHHHhccCccchhhhh
Q psy9135 401 DVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELD---LDM-LNIATIILDSLLKTGRDMKKPLA 476 (1107)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~---~~~-~gL~e~I~~sI~~~~~d~r~~L~ 476 (1107)
....+.++.|||++||+||+|. .+. .+|+++|.++|++||+|+|++++
T Consensus 265 ----------------------------~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~ 316 (418)
T 1k8k_A 265 ----------------------------KEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLY 316 (418)
T ss_dssp ----------------------------CEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHH
T ss_pred ----------------------------cccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHH
Confidence 0001223789999999999995 343 79999999999999999999999
Q ss_pred ccEEEEcCCCCccChHHHHHHHHHhhcCCCCc--------cccccceeEEEEcCCCCCccccchhHHhhcCCcccccccc
Q psy9135 477 ENILLTGGTAMTPGLKYRLLQELRTLIESPPY--------KDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAI 548 (1107)
Q Consensus 477 ~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~--------~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~I 548 (1107)
+||+||||+|++|||.+||++||..+.|...+ .......+++|.+++ +|.+++|+||||+|++++|+++||
T Consensus 317 ~~IvL~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~-~~~~~~w~Ggsilasl~~f~~~~i 395 (418)
T 1k8k_A 317 KNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHH-MQRYAVWFGGSMLASTPEFYQVCH 395 (418)
T ss_dssp HCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCT-TCTTHHHHHHHHHTTSHHHHHHSE
T ss_pred hceEEeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCC-ccccceeHhHHHHHcCccHhheEE
Confidence 99999999999999999999999988631000 000002367888776 899999999999999999999999
Q ss_pred cHHHHHhcCC
Q psy9135 549 QKDAYLNNNM 558 (1107)
Q Consensus 549 Tk~eYeE~G~ 558 (1107)
||+||+|+|+
T Consensus 396 tk~ey~e~G~ 405 (418)
T 1k8k_A 396 TKKDYEEIGP 405 (418)
T ss_dssp EHHHHHHHCG
T ss_pred EHHHHhhhCH
Confidence 9999999998
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-53 Score=493.23 Aligned_cols=332 Identities=22% Similarity=0.361 Sum_probs=283.8
Q ss_pred ccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc------cceeec-----------------CCHHhhHHHHH
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEY-----------------KDADDLYGLLI 791 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~------~~~~~~-----------------~~~~~~~d~le 791 (1107)
+.++||||+||+++|+||+|++.|+.++||++++++.... +..++| +|.+.|||.++
T Consensus 4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~~e 83 (375)
T 2fxu_A 4 ETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDME 83 (375)
T ss_dssp CCCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHHH
T ss_pred CCceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHHHH
Confidence 4578999999999999999999999999999998865431 233333 35667899999
Q ss_pred HHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEE
Q psy9135 792 EFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLL 871 (1107)
Q Consensus 792 ~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~ 871 (1107)
.+|+|+|++.|+++++++++++++|+++++..|++++|++||.++++++++++++++|+|++|+++|+|||+|++.|+|+
T Consensus 84 ~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~v~ 163 (375)
T 2fxu_A 84 KIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNV 163 (375)
T ss_dssp HHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEEEE
T ss_pred HHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHh
Q psy9135 872 PVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAA 951 (1107)
Q Consensus 872 PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~ 951 (1107)
||++|+++.++..++++| |+++|++|.++|.+++ +.+... .+.+.+++||+++||++.+...+....
T Consensus 164 ~v~~G~~~~~~~~~~~~G-G~~lt~~l~~~l~~~~--------~~~~~~----~~~~~~e~iK~~~~~v~~~~~~e~~~~ 230 (375)
T 2fxu_A 164 PIYEGYALPHAIMRLDLA-GRDLTDYLMKILTERG--------YSFVTT----AEREIVRDIKEKLCYVALDFENEMATA 230 (375)
T ss_dssp EEETTEECGGGCEEESCC-HHHHHHHHHHHHHHHT--------CCCCSH----HHHHHHHHHHHHHCCCCSSHHHHHHHH
T ss_pred EeECCEEeccceEEeccC-HHHHHHHHHHHHHhcC--------CCCCcH----HHHHHHHHHHHHHHhhcccHHHHHHhh
Confidence 999999999999999999 9999999999999886 222211 124589999999999987653322111
Q ss_pred cCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC------------
Q psy9135 952 KNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET------------ 1016 (1107)
Q Consensus 952 ~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L------------ 1016 (1107)
... ......|+||||+.+.+ +.|||.+||.||+|. .+..+|+++|.++|.+|| .|+|+.+
T Consensus 231 ~~~---~~~~~~~~lpdg~~i~i-~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~-~~~~~~l~~~IvLtGG~s~ 305 (375)
T 2fxu_A 231 ASS---SSLEKSYELPDGQVITI-GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCD-IDIRKDLYANNVMSGGTTM 305 (375)
T ss_dssp HHC---STTCEEEECTTSCEEEE-STHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSC-HHHHHHHHTCEEEESGGGC
T ss_pred ccc---CccCeEEECCCCCEEEE-ChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCC-HHHHHHHHhCcEeeCCCCC
Confidence 111 13457899999999999 899999999999995 467899999999999999 9999877
Q ss_pred -CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-c
Q psy9135 1017 -QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-I 1094 (1107)
Q Consensus 1017 -~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i 1094 (1107)
||| .+||++||..+.|. . ..++|. .+++|.+++|+|||++|++++|+++||||+||+|+|+ |
T Consensus 306 ~pG~------~~rl~~el~~~~p~-~--------~~v~v~-~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~ 369 (375)
T 2fxu_A 306 YPGI------ADRMQKEITALAPS-T--------MKIKII-APPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSI 369 (375)
T ss_dssp STTH------HHHHHHHHHHHSCT-T--------CCCCEE-CCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGG
T ss_pred CccH------HHHHHHHHHHhCCC-C--------eeEEEE-cCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHH
Confidence 888 99999999999882 1 235665 4558999999999999999999999999999999996 8
Q ss_pred cceecc
Q psy9135 1095 PDWCNL 1100 (1107)
Q Consensus 1095 ~d~~~~ 1100 (1107)
.+++|+
T Consensus 370 ~~~k~~ 375 (375)
T 2fxu_A 370 VHRKCF 375 (375)
T ss_dssp GC----
T ss_pred Hhhhcc
Confidence 888874
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-54 Score=506.13 Aligned_cols=330 Identities=22% Similarity=0.296 Sum_probs=133.6
Q ss_pred ccceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc--------cceeec-----------------CCHHhhHHH
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL--------RNLYEY-----------------KDADDLYGL 789 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~--------~~~~~~-----------------~~~~~~~d~ 789 (1107)
+.++||||+||++||+||+|++.|+.++||++++++.... ++.++| +|.+.|||.
T Consensus 5 ~~~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dwd~ 84 (394)
T 1k8k_B 5 GRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNWDD 84 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEecHHH
Confidence 4468999999999999999999999999999998865321 233333 356789999
Q ss_pred HHHHHHHHH-HhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCce
Q psy9135 790 LIEFIRKIF-FKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEA 868 (1107)
Q Consensus 790 le~i~~~~~-~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T 868 (1107)
++.+|+|+| ++.|+++++++|+++++|+++++..|++++|++||.|++|++++++++++|+|++|+++|+|||+|++.|
T Consensus 85 ~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g~T 164 (394)
T 1k8k_B 85 MKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 164 (394)
T ss_dssp ---------------------------------------------------------------------CCEEEECSSCE
T ss_pred HHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCCce
Confidence 999999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHH
Q psy9135 869 TLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAE 948 (1107)
Q Consensus 869 ~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~ 948 (1107)
+|+||++|+++.++++++++| |+++|++|.++|++++ +.+.. ..+.+.+++||+++||++.+...+.
T Consensus 165 ~v~pv~~G~~~~~~~~~~~~G-G~~lt~~l~~~l~~~~--------~~~~~----~~~~~~ae~iK~~~~~v~~d~~~~~ 231 (394)
T 1k8k_B 165 HICPVYEGFSLPHLTRRLDIA-GRDITRYLIKLLLLRG--------YAFNH----SADFETVRMIKEKLCYVGYNIEQEQ 231 (394)
T ss_dssp EEECEETTEECSTTCEEESCC-HHHHHHHHHHHHHHTT--------CCCCT----TTTHHHHHHHHHHHCCCCSSHHHHH
T ss_pred EeeeeECCEEcccceEEeecc-HHHHHHHHHHHHHhcC--------CCCCc----HHHHHHHHHHHHhheeEecCHHHHH
Confidence 999999999999999999999 9999999999999886 22221 1234689999999999997653322
Q ss_pred HHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccccC---------
Q psy9135 949 IAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGREET--------- 1016 (1107)
Q Consensus 949 ~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~~L--------- 1016 (1107)
..... .......|+||||+.+.+ +.|||.+||+||+|+ .+..+|+++|.++|.+|| +|+|+.|
T Consensus 232 ~~~~~---~~~~~~~~~lpdg~~i~i-~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~-~d~r~~l~~nIvLtGG 306 (394)
T 1k8k_B 232 KLALE---TTVLVESYTLPDGRIIKV-GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAAD-IDTRSEFYKHIVLSGG 306 (394)
T ss_dssp HHHHH---CSTTCEEEECTTSCEEEE-CTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSC-TTTHHHHHTTCEEESG
T ss_pred Hhhcc---CCcCceEEECCCCCEEEE-CchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCC-HHHHHHHHhCEEEeCc
Confidence 11111 113457899999999999 899999999999995 567899999999999999 9999887
Q ss_pred ----CCCCCCCCccchHHHHHhhhh-----------CCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCcc-c
Q psy9135 1017 ----QYFPFRCWVNTRTPEKLCCLV-----------GWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYN-K 1080 (1107)
Q Consensus 1017 ----~Gf~~~~~~~eRL~~EL~~l~-----------p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f~-~ 1080 (1107)
||| .+||++||..+. | . . .+++|. .+++|.+++|+||||+|++++|+ +
T Consensus 307 ~s~~~G~------~~rl~~el~~~~~~~~~~~~~~~p-~-----~---~~v~v~-~~~~~~~~~w~Ggsilasl~~f~~~ 370 (394)
T 1k8k_B 307 STMYPGL------PSRLERELKQLYLERVLKGDVEKL-S-----K---FKIRIE-DPPRRKHMVFLGGAVLADIMKDKDN 370 (394)
T ss_dssp GGCSTTH------HHHHHHHHHHHHHHHTCSSCCCTT-C-----C---CCC-----------------------------
T ss_pred ccccccH------HHHHHHHHHHHHhhhhcccccCCC-C-----c---eEEEEe-cCCCcceeEEhhhHHhhCCcCCccc
Confidence 888 999999999987 4 1 0 135664 45589999999999999999999 9
Q ss_pred eeeeHHHHhhcCC-cccee
Q psy9135 1081 RAIQKDVYLNNNV-IPDWC 1098 (1107)
Q Consensus 1081 ~~ITk~eYeE~G~-i~d~~ 1098 (1107)
+||||+||+|+|+ |.+++
T Consensus 371 ~~itk~eY~e~G~~~~~~~ 389 (394)
T 1k8k_B 371 FWMTRQEYQEKGVRVLEKL 389 (394)
T ss_dssp -------------------
T ss_pred eeecHHHHhhhCHHHHHhc
Confidence 9999999999996 77763
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=470.74 Aligned_cols=339 Identities=21% Similarity=0.282 Sum_probs=279.2
Q ss_pred ccceEEEecCcceEEEeccCCCCccEEEecceeccCCCC--------------ccceeecC----------------CHH
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK--------------LRNLYEYK----------------DAD 784 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~--------------~~~~~~~~----------------~~~ 784 (1107)
+.++||||+||+++|+||+|++.|+.++||++++++... .++.++|+ |.+
T Consensus 4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~pi~~G~i 83 (418)
T 1k8k_A 4 RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIV 83 (418)
T ss_dssp CSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTTSEEECCEETTEE
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCCCEEeccccCCEE
Confidence 346899999999999999999999999999999886532 02245543 456
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcc---------cCC
Q psy9135 785 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCT---------LGV 855 (1107)
Q Consensus 785 ~~~d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya---------~g~ 855 (1107)
.+||.++.+|+|+|++.|+++++++++++++|+++++..|+++.|++||.++++++++++++++|+|+ .++
T Consensus 84 ~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~ 163 (418)
T 1k8k_A 84 EDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL 163 (418)
T ss_dssp SCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC
Confidence 78999999999999889999999999999999999999999999999999999999999999999999 566
Q ss_pred ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHH
Q psy9135 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKV 935 (1107)
Q Consensus 856 ~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe 935 (1107)
+|+|||+|++.|+|+||++|+++.+++.++++| |+++|++|.++|.+++ +.++. ..+.+.++++|+
T Consensus 164 -~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lG-G~~lt~~l~~~l~~~~--------~~~~~----~~~~~~~e~iK~ 229 (418)
T 1k8k_A 164 -TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIA-GRDITYFIQQLLRDRE--------VGIPP----EQSLETAKAVKE 229 (418)
T ss_dssp -CEEEEEESSSCEEEEEEETTEECGGGCEEESCS-HHHHHHHHHHHHHTTC--------CCCCG----GGHHHHHHHHHH
T ss_pred -eEEEEEcCCCceEEEEeECCEEcccceEEEeCc-HHHHHHHHHHHHHhcC--------CCCCC----HHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999999876 22221 123468999999
Q ss_pred hceeeccchHHHHHHhcCCCCCCCCceEEeCCCCC-----EEEecccccccccccccCCCC---C-CCcHHHHHHHHHHc
Q psy9135 936 CSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGK-----KIPVSGHIRETAFEVLFELDL---D-MLNIATIILDSLLS 1006 (1107)
Q Consensus 936 ~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~-----~i~l~~~erf~~~E~LF~P~~---~-~~gL~~~I~~sI~~ 1006 (1107)
++||+..+... +..+.... +......|++||+. .+.+ +.|||.+||+||+|++ + ..+|+++|.++|.+
T Consensus 230 ~~~~v~~~~~~-e~~~~~~~-~~~~~~~~~lpd~~~~~~~~i~l-~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~ 306 (418)
T 1k8k_A 230 RYSYVCPDLVK-EFNKYDTD-GSKWIKQYTGINAISKKEFSIDV-GYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQN 306 (418)
T ss_dssp HHCCCCSCHHH-HHHHHHHS-GGGTCEEEEEECTTTCCEEEEEE-CTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHH
T ss_pred hhchhcccHHH-HHHhhccc-ccccceeEECCCCCCCcccEEEe-ChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHc
Confidence 99999976532 22110000 00234689999998 8999 8999999999999963 3 36999999999999
Q ss_pred CCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccc------cc--cceeeEEEEeCCCCcceeh
Q psy9135 1007 VASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICC------YK--LFIKNFKFHEFPAKENYVA 1065 (1107)
Q Consensus 1007 ~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~------~~--~~~~~~~v~~~~~~~~~~a 1065 (1107)
|| .|+|+.+ ||| .+||++||..+.| ..... .. -....++|. .+++|.+++
T Consensus 307 ~~-~~~~~~l~~~IvL~GG~s~~pg~------~~rl~~el~~~~~-~~~~~~~~~~~~~~~p~~~~v~v~-~~~~~~~~~ 377 (418)
T 1k8k_A 307 CP-IDVRRPLYKNIVLSGGSTMFRDF------GRRLQRDLKRTVD-ARLKLSEELSGGRLKPKPIDVQVI-THHMQRYAV 377 (418)
T ss_dssp SC-GGGTTHHHHCEEEESGGGCSTTH------HHHHHHHHHHHHH-HHHHHHHHHC----CCCCCCCCEE-CCTTCTTHH
T ss_pred CC-HHHHHHHHhceEEeCCccccccH------HHHHHHHHHHhhc-cccccccccccccCCCCceeEEEe-CCCccccce
Confidence 99 9999887 777 9999999999874 10000 00 001235664 556899999
Q ss_pred hhhHHHhhcCCCccceeeeHHHHhhcCC-ccceec
Q psy9135 1066 WLGGAIFAATESYNKRAIQKDVYLNNNV-IPDWCN 1099 (1107)
Q Consensus 1066 W~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d~~~ 1099 (1107)
|+||||+|++++|+++||||+||+|+|+ |.++++
T Consensus 378 w~Ggsilasl~~f~~~~itk~ey~e~G~~~~~~~~ 412 (418)
T 1k8k_A 378 WFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP 412 (418)
T ss_dssp HHHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCC
T ss_pred eHhHHHHHcCccHhheEEEHHHHhhhCHHHHhhhc
Confidence 9999999999999999999999999996 888754
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-49 Score=467.74 Aligned_cols=371 Identities=14% Similarity=0.149 Sum_probs=249.8
Q ss_pred HHHHHHHHHHHHhh-ccccCCC---CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCC-CceEEEE
Q psy9135 93 YGLLIEFIRKIFFK-YFVTSPK---DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG-VNTGLVL 167 (1107)
Q Consensus 93 ~~~le~i~~~~~~~-~L~~~~~---~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g-~~tglVV 167 (1107)
|+++|.+|+|+|++ .|+++++ ++|||||||+++++..|++|+|++||+|+||++++++++++|+|++| +++||||
T Consensus 196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVV 275 (655)
T 4am6_A 196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVV 275 (655)
T ss_dssp HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEE
Confidence 99999999999984 8999986 89999999999999999999999999999999999999999999999 6999999
Q ss_pred EeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCC-CccccccccCCCHHHHH
Q psy9135 168 DIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDP-YIVTVEDVENLSDSIIE 246 (1107)
Q Consensus 168 DiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~~~e 246 (1107)
|+|++.|+|+||++|+++.++++++++||+++|++|.++ |+++|++.+ +.++ ...+..+++
T Consensus 276 DiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kL--------------L~~rgypy~~~~f~----t~~e~eiVr 337 (655)
T 4am6_A 276 NIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALF--------------LLQSDFPLQDWKID----SKHGWLLAE 337 (655)
T ss_dssp EECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHH--------------HHHTTCSCCSCCTT----SHHHHHHHH
T ss_pred cCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHH--------------HHHcCCCccccCCC----CcchHHHHH
Confidence 999999999999999999999999999999999999999 777775321 1222 224689999
Q ss_pred HHHHhceeeccchhHHHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhcccCC
Q psy9135 247 DIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSD 326 (1107)
Q Consensus 247 ~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~~~~~ 326 (1107)
+|||++|||++.+.+.+......+.+......| .+.+ |++|+.+||.||+|.+...... ..
T Consensus 338 dIKEk~CyVs~~Di~~q~~~f~~r~P~~~~~ky------~i~v-gdErflaPe~lF~Pei~~~~~~------------~~ 398 (655)
T 4am6_A 338 RLKKNFTTFQDADVAVQLYNFMNRSPNQPTEKY------EFKL-FDEVMLAPLALFFPQIFKLIRT------------SS 398 (655)
T ss_dssp HHHHHHCCCCGGGCCSEEEEEEECCSSSCEEEE------EEEE-SSHHHHHHHGGGSTHHHHHTSC------------CC
T ss_pred HHHHheEEEcccchhhhhhcceeccCCCCCcce------EEEE-CCeehhCchhcCChhhcccccc------------cc
Confidence 999999999643321111111111222233334 4555 8999999999999997432110 00
Q ss_pred CccccccccccccccCCCcchhhhccCCcccccccchhccccc-cCCccchhhhhhcc---cccccccccc---hhhccc
Q psy9135 327 GREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKF-HEFPAKENYVAWLG---GAIFAATESY---NKRAIQ 399 (1107)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~a~~~~~---~~~~~~ 399 (1107)
++ +.+.++++....+. ...|.+...+++.+ .......... -.+...
T Consensus 399 ~~---------------------------~~~~~~~~~~s~d~y~~~~nd~~S~~q~~~~~~~~~~~~~~~~~~~~~~~~ 451 (655)
T 4am6_A 399 HK---------------------------NSSLEFQLPESRDLFTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILD 451 (655)
T ss_dssp CC---------------------------CHHHHTTSCCCBCTTTCCBCSCCCHHHHHHHTTCCGGGCCSHHHHHHHHHH
T ss_pred cc---------------------------cchhhhhcCccccccCCCCCCccchhHHhhhccccCCCCccHhhhhhhhhc
Confidence 00 00000111111110 11111111111111 1110000000 000000
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCCCCCCCHHHHHHHHHhc-c-Cccchh--hh
Q psy9135 400 KDVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELDLDMLNIATIILDSLLK-T-GRDMKK--PL 475 (1107)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~~~~~gL~e~I~~sI~~-~-~~d~r~--~L 475 (1107)
....+++ ...+. |+..-.--....+|..+|.+||.. | ..|.+| ++
T Consensus 452 ~~~~~~~-----------~~~~~--------------------~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~ 500 (655)
T 4am6_A 452 AHNIIDQ-----------LQDKP--------------------ENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSF 500 (655)
T ss_dssp HHHHHHH-----------HHTSS--------------------CSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHH
T ss_pred ccccccc-----------cccCC--------------------cccccccccccccHHHHHHHHHHhhhccccHHHHHHH
Confidence 0000000 00000 000000012357999999999984 4 346665 99
Q ss_pred hccEEEEcCCCCccChHHHHHHHHHhhcCCCC----c---ccc-------------------------------------
Q psy9135 476 AENILLTGGTAMTPGLKYRLLQELRTLIESPP----Y---KDK------------------------------------- 511 (1107)
Q Consensus 476 ~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~----~---~~~------------------------------------- 511 (1107)
|+||+++||+|+||||...|...|....|.-- + +..
T Consensus 501 y~nilivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (655)
T 4am6_A 501 YSNILIVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVE 580 (655)
T ss_dssp HTCEEEESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHH
T ss_pred hhcEEEEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhh
Confidence 99999999999999999988888877555310 0 000
Q ss_pred ---------------ccceeEEEEcCCC--CCccccchhHHhhcCCcccccccccHHHHHhcCC
Q psy9135 512 ---------------LFIKNFKFHEFPA--KENYVAWLGGAIFAATESYNKRAIQKDAYLNNNM 558 (1107)
Q Consensus 512 ---------------~~~~~v~v~~~~~--~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~G~ 558 (1107)
-...+|+|+++|. ||++++|+||||+|+|++|+++||||+||+|+|+
T Consensus 581 ~l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~ 644 (655)
T 4am6_A 581 ELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGS 644 (655)
T ss_dssp HHHHHHHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGG
T ss_pred hhhhhhhhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcc
Confidence 0123589998874 4699999999999999999999999999999998
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-45 Score=429.89 Aligned_cols=287 Identities=13% Similarity=0.137 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHHHh-ccccCCC---CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC-CceEEEE
Q psy9135 787 YGLLIEFIRKIFFK-YFVTSPK---DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG-VNTGLVL 861 (1107)
Q Consensus 787 ~d~le~i~~~~~~~-~L~~~~~---~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g-~~tglVV 861 (1107)
||.++++|+|+|++ .|+++|+ ++||||+||+++++..|++|+|++||+|++|+++++.++++|+||+| ++||+||
T Consensus 196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVV 275 (655)
T 4am6_A 196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVV 275 (655)
T ss_dssp HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEE
Confidence 99999999999984 8999996 89999999999999999999999999999999999999999999999 7999999
Q ss_pred EcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeec
Q psy9135 862 DIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 941 (1107)
Q Consensus 862 DiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~ 941 (1107)
|+|++.|+|+||++|++++++++++++| |+++|++|.++|+++++.. ..+.++.. .+.+++++|||++|||+
T Consensus 276 DiG~g~T~VvPV~eG~vl~~ai~rL~iG-G~dLT~yL~kLL~~rgypy---~~~~f~t~----~e~eiVrdIKEk~CyVs 347 (655)
T 4am6_A 276 NIGAAETRIACVDEGTVLEHSAITLDYG-GDDITRLFALFLLQSDFPL---QDWKIDSK----HGWLLAERLKKNFTTFQ 347 (655)
T ss_dssp EECSSCEEEEEEETTEECGGGCEEESCC-HHHHHHHHHHHHHHTTCSC---CSCCTTSH----HHHHHHHHHHHHHCCCC
T ss_pred cCCCceEEEEEEeCCEEEhhheeeecch-HHHHHHHHHHHHHHcCCCc---cccCCCCc----chHHHHHHHHHheEEEc
Confidence 9999999999999999999999999999 9999999999999988211 01123322 23569999999999996
Q ss_pred cchHHHHHHhcCCCCCCCCceEE--eCCCC----CEEEecccccccccccccCCCC------------------------
Q psy9135 942 TMERSAEIAAKNPDHKYPSGFMY--PLKNG----KKIPVSGHIRETAFEVLFELDL------------------------ 991 (1107)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~y--~Lpdg----~~i~l~~~erf~~~E~LF~P~~------------------------ 991 (1107)
...-. .....| ..|++ +.+++ |.|||+|||+||+|.+
T Consensus 348 ~~Di~------------~q~~~f~~r~P~~~~~ky~i~v-gdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~ 414 (655)
T 4am6_A 348 DADVA------------VQLYNFMNRSPNQPTEKYEFKL-FDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDL 414 (655)
T ss_dssp GGGCC------------SEEEEEEECCSSSCEEEEEEEE-SSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCT
T ss_pred ccchh------------hhhhcceeccCCCCCcceEEEE-CCeehhCchhcCChhhcccccccccccchhhhhcCccccc
Confidence 33210 011122 23553 46888 9999999999999830
Q ss_pred ---------------------------C-------------------------------CCcHHHHHHHHHH-cCCcccc
Q psy9135 992 ---------------------------D-------------------------------MLNIATIILDSLL-SVASSDG 1012 (1107)
Q Consensus 992 ---------------------------~-------------------------------~~gL~~~I~~sI~-~~~~~d~ 1012 (1107)
+ ..+|.++|.+||. .|.+.|.
T Consensus 415 y~~~~nd~~S~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~ 494 (655)
T 4am6_A 415 FTNELNDWNSLSQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADV 494 (655)
T ss_dssp TTCCBCSCCCHHHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCG
T ss_pred cCCCCCCccchhHHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccH
Confidence 0 1489999999998 4432477
Q ss_pred cc--cC-------------CCCCCCCCccchHHHHHhhhhCC-----------------------Ccc------------
Q psy9135 1013 RE--ET-------------QYFPFRCWVNTRTPEKLCCLVGW-----------------------SNI------------ 1042 (1107)
Q Consensus 1013 r~--~L-------------~Gf~~~~~~~eRL~~EL~~l~p~-----------------------~~~------------ 1042 (1107)
++ .+ ||| ..-|...|...-|. .+.
T Consensus 495 ~k~~~~y~nilivGggski~g~------~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (655)
T 4am6_A 495 TRMNSFYSNILIVGGSSKIPAL------DFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQ 568 (655)
T ss_dssp GGHHHHHTCEEEESTTCCCTTH------HHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTT
T ss_pred HHHHHHhhcEEEEcCcccCccH------HHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchh
Confidence 76 33 777 55555544442220 000
Q ss_pred -----------------------cccccceeeEEEEeCCC--CcceehhhhHHHhhcCCCccceeeeHHHHhhcCC-ccc
Q psy9135 1043 -----------------------CCYKLFIKNFKFHEFPA--KENYVAWLGGAIFAATESYNKRAIQKDVYLNNNV-IPD 1096 (1107)
Q Consensus 1043 -----------------------~~~~~~~~~~~v~~~~~--~~~~~aW~GgSIlasl~~f~~~~ITk~eYeE~G~-i~d 1096 (1107)
....-..-+++|..+|. ++++++|+||||+|+|.+|+++||||+||+|.|+ |.+
T Consensus 569 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~ 648 (655)
T 4am6_A 569 ILQAQIKEKIVEELEEQHQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQ 648 (655)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGG
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheE
Confidence 00000112367763331 3489999999999999999999999999999996 999
Q ss_pred eecc
Q psy9135 1097 WCNL 1100 (1107)
Q Consensus 1097 ~~~~ 1100 (1107)
++|+
T Consensus 649 ~k~~ 652 (655)
T 4am6_A 649 YKCI 652 (655)
T ss_dssp TSCS
T ss_pred eccc
Confidence 9885
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=246.04 Aligned_cols=183 Identities=15% Similarity=0.118 Sum_probs=145.6
Q ss_pred CeEEEecCCceeEEeeecCcccccccccceeccCC-ccccceecc---------------------CchhhHHHHHHHHH
Q psy9135 43 KGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT-NKLRNLYEY---------------------KDADDLYGLLIEFI 100 (1107)
Q Consensus 43 ~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~-~~~~~~~~~---------------------~~~~~~~~~le~i~ 100 (1107)
++|+||+||.++|+|++++. |...+||+|+.... ++ .+++| ++...+|+.++.+|
T Consensus 4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~~~--~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~ 80 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTTGE--ILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVML 80 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTTCC--EEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHH
T ss_pred ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCCCc--EEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHH
Confidence 56788888888888888765 76778999987654 21 11111 13346799999999
Q ss_pred HHHHhhccccC-CCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCce
Q psy9135 101 RKIFFKYFVTS-PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEA 174 (1107)
Q Consensus 101 ~~~~~~~L~~~-~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T 174 (1107)
.+++.+..... ..+.+++++.|..++..+|+.+.+ .+|..|++.+.++.+|.+++++++. .+.+|||+|+++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~-a~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggtt 159 (344)
T 1jce_A 81 RYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILD-AGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTT 159 (344)
T ss_dssp HHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHH-HHHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCE
T ss_pred HHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHH-HHHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeE
Confidence 99995433322 446899999999999999999998 5799999999999999999999986 6899999999999
Q ss_pred EEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhc-CCCCCCccccccccCCCHHHHHHHHHhce
Q psy9135 175 TLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKAL-ENPDPYIVTVEDVENLSDSIIEDIKVCSC 253 (1107)
Q Consensus 175 ~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~~~~~~~e~iKe~~c 253 (1107)
+++++..|.++. ....++||+++|+.|.+. +.++ + ..++...+|++|+++|
T Consensus 160 dvsv~~~~~~~~--~~~~~lGG~~id~~l~~~--------------l~~~~~------------~~~~~~~ae~~K~~l~ 211 (344)
T 1jce_A 160 EVAVISLGSIVT--WESIRIAGDEMDEAIVQY--------------VRETYR------------VAIGERTAERVKIEIG 211 (344)
T ss_dssp EEEEEETTEEEE--EEEESCSHHHHHHHHHHH--------------HHHHHC------------EECCHHHHHHHHHHHC
T ss_pred EEEEEEcCCEEe--eCCCCccChhHHHHHHHH--------------HHHHhC------------cccCHHHHHHHHHHHh
Confidence 999999999874 467999999999999998 4332 1 1135788999999999
Q ss_pred eecc
Q psy9135 254 FVTT 257 (1107)
Q Consensus 254 ~v~~ 257 (1107)
+...
T Consensus 212 ~~~~ 215 (344)
T 1jce_A 212 NVFP 215 (344)
T ss_dssp BCSC
T ss_pred ccCc
Confidence 8764
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=211.70 Aligned_cols=285 Identities=12% Similarity=0.070 Sum_probs=208.9
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCC-CCc-------c--------cee----ecCCHHhhHHHHHHHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT-NKL-------R--------NLY----EYKDADDLYGLLIEFIRK 796 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~-~~~-------~--------~~~----~~~~~~~~~d~le~i~~~ 796 (1107)
.+|+||+||.++|+|++++. |...+||+++...+ ++. + +.. ..++.+.+|+.++++|.+
T Consensus 4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~~~~i~~~ 82 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRY 82 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHHHH
T ss_pred ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHHHHHHHHH
Confidence 58999999999999999876 77789999987654 210 0 000 123556789999999999
Q ss_pred HHHhccccC-CCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-----ceEEEEEcCCCceEE
Q psy9135 797 IFFKYFVTS-PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATL 870 (1107)
Q Consensus 797 ~~~~~L~~~-~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-----~tglVVDiG~~~T~v 870 (1107)
++.+..... +...++++++|...+..+|+.+.+. +|..+++.+.++++|.+|+++++. .+.+|||+|++.|++
T Consensus 83 ~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a-~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdv 161 (344)
T 1jce_A 83 FINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA-GLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEV 161 (344)
T ss_dssp HHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEE
T ss_pred HHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEE
Confidence 995533323 4568999999999999999999995 699999999999999999999986 689999999999999
Q ss_pred EEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHH
Q psy9135 871 LPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIA 950 (1107)
Q Consensus 871 ~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~ 950 (1107)
+++..|.++. ....++| |+++|+.|.+.+.++- . ..++...++++|+++|+........+
T Consensus 162 sv~~~~~~~~--~~~~~lG-G~~id~~l~~~l~~~~---------~------~~~~~~~ae~~K~~l~~~~~~~~~~~-- 221 (344)
T 1jce_A 162 AVISLGSIVT--WESIRIA-GDEMDEAIVQYVRETY---------R------VAIGERTAERVKIEIGNVFPSKENDE-- 221 (344)
T ss_dssp EEEETTEEEE--EEEESCS-HHHHHHHHHHHHHHHH---------C------EECCHHHHHHHHHHHCBCSCCHHHHH--
T ss_pred EEEEcCCEEe--eCCCCcc-ChhHHHHHHHHHHHHh---------C------cccCHHHHHHHHHHHhccCccccCCc--
Confidence 9999998874 4678999 9999999999997652 0 12335589999999998875432111
Q ss_pred hcCCCCCCCCceEEe-----CCCCC--EEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccc-----cC--
Q psy9135 951 AKNPDHKYPSGFMYP-----LKNGK--KIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGRE-----ET-- 1016 (1107)
Q Consensus 951 ~~~~~~~~~~~~~y~-----Lpdg~--~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~-----~L-- 1016 (1107)
..++ +.+|. .+.+ ..++|. .+|+|.. ..|.+.|.++|.+++ .++++ .+
T Consensus 222 -----------~~~~~~~~~~~~g~~~~~~i-~~~~~~---~~~~~~~--~~i~~~i~~~l~~~~-~~~~~~~~~~~IvL 283 (344)
T 1jce_A 222 -----------LETTVSGIDLSTGLPRKLTL-KGGEVR---EALRSVV--VAIVESVRTTLEKTP-PELVSDIIERGIFL 283 (344)
T ss_dssp -----------CEEEEEEEETTTTEEEEEEE-EHHHHH---HHTHHHH--HHHHHHHHHHHHTSC-HHHHHHHHHHCEEE
T ss_pred -----------ceEEEeccccCCCCceeEEE-eHHHHH---HHHHHHH--HHHHHHHHHHHHhCC-chhccchhhCcEEE
Confidence 1222 33564 4566 344442 3455422 368889999999998 65432 22
Q ss_pred -CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc-CCCcc
Q psy9135 1017 -QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA-TESYN 1079 (1107)
Q Consensus 1017 -~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas-l~~f~ 1079 (1107)
.|.+..+++.+||++++.. + +. .+.+|.+++|+||+++++ +++|+
T Consensus 284 ~GG~s~~p~l~~~l~~~~~~--~-------------v~---~~~~p~~ava~Gaa~~a~~~~~~~ 330 (344)
T 1jce_A 284 TGGGSLLRGLDTLLQKETGI--S-------------VI---RSEEPLTAVAKGAGMVLDKVNILK 330 (344)
T ss_dssp ESGGGCSBTHHHHHHHHHSS--C-------------EE---ECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred ECccccchHHHHHHHHHHCC--C-------------cc---ccCChHHHHHHHHHHHHhChHHHH
Confidence 3332333339999988742 1 12 234789999999999998 46664
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=171.64 Aligned_cols=117 Identities=15% Similarity=0.054 Sum_probs=94.6
Q ss_pred CchhhHHHHHHHHHHHHHhhccccCC-CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceEE
Q psy9135 87 KDADDLYGLLIEFIRKIFFKYFVTSP-KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGL 165 (1107)
Q Consensus 87 ~~~~~~~~~le~i~~~~~~~~L~~~~-~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tgl 165 (1107)
++.+.+|+.++.+|++++........ ....++++.|.......|+ ..+.++|.+|++...+..++.++++++|..+++
T Consensus 64 ~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~-~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~ 142 (272)
T 3h1q_A 64 DGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAE-ACGHVVAGAGLELVTLVDEPVAAARALGINDGI 142 (272)
T ss_dssp TTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTT-HHHHHHHHTTCEEEEEECHHHHHHHHHTCSSEE
T ss_pred CCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHH-HHHHHHHHcCCeeeecccHHHHHHHHHcCCCEE
Confidence 35567799999999999865433322 3345677777766555554 566789999999999999999999999999999
Q ss_pred EEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 166 VLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 166 VVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
|||+|+++|.++++.+|.++. ....++||.++++.+.+.
T Consensus 143 viDiGggst~~~~~~~g~~~~--~~~~~~Gg~~~~~~l~~~ 181 (272)
T 3h1q_A 143 VVDIGGGTTGIAVIEKGKITA--TFDEPTGGTHLSLVLAGS 181 (272)
T ss_dssp EEEECSSCEEEEEEETTEEEE--ECCBSCCHHHHHHHHHHH
T ss_pred EEEECCCcEEEEEEECCEEEE--EecCCCcHHHHHHHHHHH
Confidence 999999999999999999884 377999999999999887
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=99.61 E-value=6e-15 Score=177.82 Aligned_cols=93 Identities=17% Similarity=0.098 Sum_probs=79.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEee--cCEec
Q psy9135 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVY--EGVPV 185 (1107)
Q Consensus 113 ~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~--dG~vl 185 (1107)
....++++.|..++..+|+.+.+. ++..|++.+.++.+|.+|++++|. .+.+|+|+|+++|+++.+. +|...
T Consensus 108 ~~~~~VitvPa~~~~~qr~a~~~a-~~~AGl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~ 186 (509)
T 2v7y_A 108 PVTRAVITVPAYFNDAQRQATKDA-GRIAGLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFE 186 (509)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEE
Confidence 457899999999999999999885 699999999999999999998876 4799999999999999776 46432
Q ss_pred -ccceEEecccHHHHHHHHHHh
Q psy9135 186 -LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 186 -~~~~~~~~iGG~~lt~~L~~l 206 (1107)
.......++||.++|+.|.+.
T Consensus 187 v~a~~g~~~lGG~d~d~~l~~~ 208 (509)
T 2v7y_A 187 VKATAGDNHLGGDDFDQVIIDY 208 (509)
T ss_dssp EEEEEEETTCSHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHH
Confidence 223345789999999999988
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=168.98 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=77.0
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCc------eEEEEEeCCCceEEEEeecC----
Q psy9135 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN------TGLVLDIGYSEATLLPVYEG---- 182 (1107)
Q Consensus 113 ~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~------tglVVDiG~~~T~V~PV~dG---- 182 (1107)
....++++.|..++..+|+.+.+. ++..|++.+.++.+|.+++++++.. +.+|||+|+++|+++.+..+
T Consensus 134 ~~~~~vitvP~~~~~~~r~~~~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~ 212 (383)
T 1dkg_D 134 PVTEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDG 212 (383)
T ss_dssp CCCEEEECBCTTCCHHHHHHHHHH-HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC---
T ss_pred CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCC
Confidence 346799999999999999999886 6899999999999999999887653 78999999999999977754
Q ss_pred --Eeccc-ceEEecccHHHHHHHHHHh
Q psy9135 183 --VPVLC-AWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 183 --~vl~~-~~~~~~iGG~~lt~~L~~l 206 (1107)
..... .....++||.++|+.|.++
T Consensus 213 ~~~~~v~~~~~~~~lGG~~id~~l~~~ 239 (383)
T 1dkg_D 213 EKTFEVLATNGDTHLGGEDFDSRLINY 239 (383)
T ss_dssp -CCCEEEEEEEESSCSHHHHHHHHHHH
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 22211 2344799999999999988
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.3e-13 Score=146.91 Aligned_cols=241 Identities=15% Similarity=0.021 Sum_probs=162.6
Q ss_pred ceEEEecCcceEEEeccCCCCccEEEecceeccCCCCccceeecCCHHhhHHHHHHHHHHHHHhcccc-CCCCceEEEEe
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKLRNLYEYKDADDLYGLLIEFIRKIFFKYFVT-SPKDKRIVVVE 815 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~~~d~le~i~~~~~~~~L~~-~~~~~~vll~e 815 (1107)
-.++||+||.++|+....++. +. +..... + ..-..++.+.+|+.++++|++++...... ......++++.
T Consensus 29 ~~~gIDiGS~s~k~vi~~~~~-~~-l~~~~~-~------~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tv 99 (272)
T 3h1q_A 29 YKVGVDLGTADIVLVVTDQEG-IP-VAGALK-W------ASVVKDGLVVDYIGAIQIVRELKAKVERLLGSELFQAATAI 99 (272)
T ss_dssp CEEEEECCSSEEEEEEECTTC-CE-EEEEEE-E------CCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSSCCCEEEEEC
T ss_pred EEEEEEcccceEEEEEECCCC-cE-EEEEee-c------ccccCCCEEEcHHHHHHHHHHHHHHHHHhcCCccCeEEEEc
Confidence 478999999999999854332 21 111000 0 01123578889999999999998654433 22335677777
Q ss_pred ccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHH
Q psy9135 816 SVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895 (1107)
Q Consensus 816 ~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt 895 (1107)
|.......|+ ..+.++|.++++...+..++.++++++|..+++|||+|++.|.++++.+|.++. ....++| |.+++
T Consensus 100 p~~~~~~~~~-~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~~~~~g~~~~--~~~~~~G-g~~~~ 175 (272)
T 3h1q_A 100 PPGTVGRNAE-ACGHVVAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIAVIEKGKITA--TFDEPTG-GTHLS 175 (272)
T ss_dssp CSCC---CTT-HHHHHHHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEEEEETTEEEE--ECCBSCC-HHHHH
T ss_pred CCCCCHHHHH-HHHHHHHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEEEEECCEEEE--EecCCCc-HHHHH
Confidence 7766665555 455688999999999999999999999999999999999999999999999873 4678999 99999
Q ss_pred HHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeeccchHHHHHHhcCCCCCCCCceEEeCCCCCEEEec
Q psy9135 896 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVS 975 (1107)
Q Consensus 896 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~ 975 (1107)
+.+.+.+.- +.+.++++|++++- . .+
T Consensus 176 ~~l~~~l~~---------------------~~~~ae~~k~~~~~----~--~~--------------------------- 201 (272)
T 3h1q_A 176 LVLAGSYKI---------------------PFEEAETIKKDFSR----H--RE--------------------------- 201 (272)
T ss_dssp HHHHHHHTC---------------------CHHHHHHHHHSSTT----H--HH---------------------------
T ss_pred HHHHHHhCC---------------------CHHHHHHHHHhcCC----H--HH---------------------------
Confidence 999888731 22368888887650 0 00
Q ss_pred ccccccccccccCCCCCCCcHHHHHHHHHHcCCcccccccC--CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEE
Q psy9135 976 GHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGREET--QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFK 1053 (1107)
Q Consensus 976 ~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r~~L--~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~ 1053 (1107)
.....+.++ ..+.+.|.+++++++ +...-+ .|.+..+++.++|++++.. +
T Consensus 202 ---~~~~~~~~~------~~i~~~i~~~l~~~~--~~~~ivL~GG~a~~~~l~~~l~~~l~~--~--------------- 253 (272)
T 3h1q_A 202 ---IMRVVRPVI------EKMALIVKEVIKNYD--QTLPVYVVGGTAYLTGFSEEFSRFLGK--E--------------- 253 (272)
T ss_dssp ---HHHHHHHHH------HHHHHHHHHHTTTSC--SSCCEEEESGGGGSTTHHHHHHHHHSS--C---------------
T ss_pred ---HHHHHHHHH------HHHHHHHHHHHHhcC--CCCEEEEECCccchhhHHHHHHHHhCC--C---------------
Confidence 001111122 257777888887775 122222 2222222229999988843 2
Q ss_pred EEeCCCCcceehhhhHHHhh
Q psy9135 1054 FHEFPAKENYVAWLGGAIFA 1073 (1107)
Q Consensus 1054 v~~~~~~~~~~aW~GgSIla 1073 (1107)
+ ..+.+|.+++|+|++++|
T Consensus 254 v-~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 254 V-QVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp C-BCCSSGGGHHHHHHHTTC
T ss_pred c-cccCChHHHHHHHHHhcC
Confidence 1 134588999999999875
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=150.72 Aligned_cols=93 Identities=14% Similarity=0.141 Sum_probs=76.3
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCc---------eEEEEEeCCCceEEEEee--c
Q psy9135 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN---------TGLVLDIGYSEATLLPVY--E 181 (1107)
Q Consensus 113 ~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~---------tglVVDiG~~~T~V~PV~--d 181 (1107)
....++++.|..++..+|+.+.+. ++..|++.+.++.+|.+|+++++.. +.+|+|+|+++|+++.+. +
T Consensus 157 ~~~~~vitvPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~ 235 (404)
T 3i33_A 157 KVHSAVITVPAYFNDSQRQATKDA-GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIED 235 (404)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHH-HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEET
T ss_pred CCCcEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeC
Confidence 346799999999999999988766 8999999999999999999987643 459999999999998764 4
Q ss_pred CEec-ccceEEecccHHHHHHHHHHh
Q psy9135 182 GVPV-LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 182 G~vl-~~~~~~~~iGG~~lt~~L~~l 206 (1107)
|... .......++||.++++.|.+.
T Consensus 236 ~~~~v~~~~~~~~lGG~~~d~~l~~~ 261 (404)
T 3i33_A 236 GIFEVKSTAGDTHLGGEDFDNRMVSH 261 (404)
T ss_dssp TEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4332 222344789999999999888
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=147.95 Aligned_cols=284 Identities=16% Similarity=0.084 Sum_probs=175.1
Q ss_pred ceEEEecCcceEEEeccCCCCccEE--------EecceeccCCCCc-------------cceee-----c-------CCH
Q psy9135 737 TGVVLDIGSKYTKYGIFGSFQPKGF--------IKSQVKDPHTNKL-------------RNLYE-----Y-------KDA 783 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~age~~P~~i--------~ps~vg~~~~~~~-------------~~~~~-----~-------~~~ 783 (1107)
.+|.||+||.+++++++.+..|..+ +||+++....... ..++. | ++
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg~p~~~~~~g- 81 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNPNTIISIKRHMGTDYKVEIEG- 81 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCSSEEECGGGTTTSCCCEEETT-
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEECCCcEEECHHHHHhHHhCCCcHHHHHHhcCCCcEEEECC-
Confidence 5899999999999999988888887 8999876321100 00110 0 11
Q ss_pred HhhHHHHHHHHHHHHH-------hccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-
Q psy9135 784 DDLYGLLIEFIRKIFF-------KYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV- 855 (1107)
Q Consensus 784 ~~~~d~le~i~~~~~~-------~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~- 855 (1107)
..|. .++++.+++. +.+ ......++++.|...+..+|+.+.+. ++..|++.+.++++|.+|++++|.
T Consensus 82 -~~~~-~~ei~a~~L~~l~~~ae~~l--~~~~~~~VitvPa~~~~~qr~a~~~a-~~~AGl~~~~li~Ep~AAAlay~~~ 156 (509)
T 2v7y_A 82 -KQYT-PQEISAIILQYLKSYAEDYL--GEPVTRAVITVPAYFNDAQRQATKDA-GRIAGLEVERIINEPTAAALAYGLD 156 (509)
T ss_dssp -EEEC-HHHHHHHHHHHHHHHHHHHH--TSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCEEEEEEEHHHHHHHHTTGG
T ss_pred -EEEc-HHHHHHHHHHHHHHHHHHHh--CCCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecCHHHHHHHHhhc
Confidence 1122 2333333331 222 23457899999999999999999986 588999999999999999999886
Q ss_pred ----ceEEEEEcCCCceEEEEEE--cCEe-eccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhh-hhcccH
Q psy9135 856 ----NTGLVLDIGYSEATLLPVY--EGVP-VLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVED-VENLSD 927 (1107)
Q Consensus 856 ----~tglVVDiG~~~T~v~PV~--dG~~-l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~-~~~l~~ 927 (1107)
.+.+|+|+|++.|.++.+. +|.. +.......++| |.++|+.|.+.|.++-.. .+. ..+.... ....-.
T Consensus 157 ~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lG-G~d~d~~l~~~l~~~~~~-~~~--~~~~~~~~~~~~l~ 232 (509)
T 2v7y_A 157 KEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLG-GDDFDQVIIDYLVNQFKQ-EHG--IDLSKDKMALQRLK 232 (509)
T ss_dssp GSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCS-HHHHHHHHHHHHHHHHHH-HHS--CCGGGCHHHHHHHH
T ss_pred cCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcC-HHHHHHHHHHHHHHHHHH-HhC--CCcccCHHHHHHHH
Confidence 4799999999999999766 3643 22233446899 999999999988765200 000 0011000 000112
Q ss_pred HHHHHHHHhceeeccchHHHHHHhcCCCCCCCCceEEeCC------CC---CEEEecccccccccccccCCCCCCCcHHH
Q psy9135 928 SIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLK------NG---KKIPVSGHIRETAFEVLFELDLDMLNIAT 998 (1107)
Q Consensus 928 ~~v~~iKe~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lp------dg---~~i~l~~~erf~~~E~LF~P~~~~~gL~~ 998 (1107)
..++.+|++++.... ..+.+| +| ..+.+ ..++| |-+|+|-. ..+.+
T Consensus 233 ~~aE~~K~~ls~~~~-------------------~~i~l~~~~~~~~G~~~~~~~i-tr~~f---e~l~~~~~--~~i~~ 287 (509)
T 2v7y_A 233 DAAEKAKKELSGVTQ-------------------TQISLPFISANENGPLHLEMTL-TRAKF---EELSAHLV--ERTMG 287 (509)
T ss_dssp HHHHHHHHHTTTCSE-------------------EEEEEEEEEEETTEEEEEEEEE-EHHHH---HHHTHHHH--HTTHH
T ss_pred HHHHHHHHhcCCCCc-------------------EEEEEeccccCCCCCeeEEEEE-EHHHH---HHHHHHHH--HHHHH
Confidence 467888887764321 122222 23 22355 23333 23444421 25778
Q ss_pred HHHHHHHcCCccc---ccccC--CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhh
Q psy9135 999 IILDSLLSVASSD---GREET--QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFA 1073 (1107)
Q Consensus 999 ~I~~sI~~~~~~d---~r~~L--~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIla 1073 (1107)
.|.++|..+. .+ +..-+ .|.+..+++.++|++++.. + + ..+.+|..++|+||+++|
T Consensus 288 ~i~~~L~~a~-~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~--~---------------~-~~~~~p~~aVa~Gaa~~a 348 (509)
T 2v7y_A 288 PVRQALQDAG-LTPADIDKVILVGGSTRIPAVQEAIKRELGK--E---------------P-HKGVNPDEVVAIGAAIQG 348 (509)
T ss_dssp HHHHHHHHHT-CCGGGCSEEEEESGGGGCHHHHHHHHHHHSS--C---------------C-BCCSCTTTHHHHHHHHHH
T ss_pred HHHHHHHHcC-CChhHCcEEEEECCcccChHHHHHHHHHhCC--C---------------c-CcCCCchhhhHhhHHHHH
Confidence 8888888775 32 22111 4443333337777777632 1 1 133478899999999998
Q ss_pred c
Q psy9135 1074 A 1074 (1107)
Q Consensus 1074 s 1074 (1107)
.
T Consensus 349 ~ 349 (509)
T 2v7y_A 349 G 349 (509)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=142.18 Aligned_cols=226 Identities=13% Similarity=0.046 Sum_probs=142.1
Q ss_pred CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCc------eEEEEEcCCCceEEEEEEcC----
Q psy9135 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN------TGLVLDIGYSEATLLPVYEG---- 876 (1107)
Q Consensus 807 ~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~------tglVVDiG~~~T~v~PV~dG---- 876 (1107)
....++++.|...+..+|+.+.+. ++..|++.+.++++|.+|+++++.. +.+|||+|+++|.++.+..+
T Consensus 134 ~~~~~vitvP~~~~~~~r~~~~~a-~~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~ 212 (383)
T 1dkg_D 134 PVTEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDG 212 (383)
T ss_dssp CCCEEEECBCTTCCHHHHHHHHHH-HHHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC---
T ss_pred CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCC
Confidence 346799999999999999999887 5889999999999999999987653 78999999999999977654
Q ss_pred --Eeecc-ceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchh-hhhcccHHHHHHHHHhceeeccchHHHHHHhc
Q psy9135 877 --VPVLC-AWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVE-DVENLSDSIIEDIKVCSCFVTTMERSAEIAAK 952 (1107)
Q Consensus 877 --~~l~~-~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~-~~~~l~~~~v~~iKe~~c~v~~~~~~~~~~~~ 952 (1107)
..... .....++| |.++|+.|.+++.++-.. ... ..+... .....-...++.+|++++......-
T Consensus 213 ~~~~~v~~~~~~~~lG-G~~id~~l~~~l~~~~~~-~~~--~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i------- 281 (383)
T 1dkg_D 213 EKTFEVLATNGDTHLG-GEDFDSRLINYLVEEFKK-DQG--IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDV------- 281 (383)
T ss_dssp -CCCEEEEEEEESSCS-HHHHHHHHHHHHHHHHHH-HHC--CCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEE-------
T ss_pred CCeEEEEEEeCCCCCC-HHHHHHHHHHHHHHHHHH-HhC--CCcccCHHHHHHHHHHHHHHHHHhCCCCceEE-------
Confidence 22111 23346899 999999999998765200 000 001000 0011113578889998875432100
Q ss_pred CCCCCCCCceEEeCCCC-C--EEEecccccccccccccCCCCCCCcHHHHHHHHHHcCCccc---ccccC--CCCCCCCC
Q psy9135 953 NPDHKYPSGFMYPLKNG-K--KIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSD---GREET--QYFPFRCW 1024 (1107)
Q Consensus 953 ~~~~~~~~~~~y~Lpdg-~--~i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d---~r~~L--~Gf~~~~~ 1024 (1107)
.....+..++| . .+.+ ..++| |-+|+|.. ..+.++|.++|.+++ .. +..-+ .|.+..++
T Consensus 282 ------~i~~~~~~~~G~~~~~~~i-t~~~~---~~~~~~~~--~~i~~~i~~~l~~~~-~~~~~i~~IvL~GG~s~~p~ 348 (383)
T 1dkg_D 282 ------NLPYITADATGPKHMNIKV-TRAKL---ESLVEDLV--NRSIELLKVALQDAG-LSVSDIDDVILVGGQTRMPM 348 (383)
T ss_dssp ------EEEEEEEETTEEEEEEEEE-EHHHH---HHHSHHHH--HHHHHHHHHHHHTTT-CCTTTCCEEEEESGGGGSHH
T ss_pred ------EEecccccCCCCeeEEEEE-eHHHH---HHHHHHHH--HHHHHHHHHHHHHcC-CCHhhCCEEEEecCccccHH
Confidence 00112334445 2 2455 33343 23444421 268888999999886 32 11111 33333333
Q ss_pred ccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcC
Q psy9135 1025 VNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAAT 1075 (1107)
Q Consensus 1025 ~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl 1075 (1107)
+.++|++++.. + + ..+.+|.+++|+||+++|++
T Consensus 349 l~~~l~~~~~~--~---------------v-~~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 349 VQKKVAEFFGK--E---------------P-RKDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp HHHHHHHHHSS--C---------------C-BCSSCTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHhCC--C---------------C-CCCcChHHHHHHHHHHHHHh
Confidence 38888877742 1 1 13457899999999999875
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=132.53 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=77.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-------ceEEEEEeCCCceEEEEee--cCEe
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-------NTGLVLDIGYSEATLLPVY--EGVP 184 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-------~tglVVDiG~~~T~V~PV~--dG~v 184 (1107)
-..++++.|..++..+|+.+.+ .++..|++.+.++.+|.+|++++|. .+.+|+|+|+++|+|+.+. +|..
T Consensus 139 v~~~VitVPa~f~~~qr~a~~~-A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~ 217 (554)
T 1yuw_A 139 VTNAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIF 217 (554)
T ss_dssp CCEEEEEECTTCCHHHHHHHHH-HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEE
T ss_pred CCeEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcE
Confidence 3579999999999999998877 6688999999999999999988763 5689999999999999876 6754
Q ss_pred c-ccceEEecccHHHHHHHHHHh
Q psy9135 185 V-LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 l-~~~~~~~~iGG~~lt~~L~~l 206 (1107)
- .......++||+++++.|.+.
T Consensus 218 ~v~a~~g~~~lGG~d~d~~l~~~ 240 (554)
T 1yuw_A 218 EVKSTAGDTHLGGEDFDNRMVNH 240 (554)
T ss_dssp EEEEEEEETTCSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHH
Confidence 2 233445789999999999888
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-09 Score=122.54 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=72.9
Q ss_pred HHHHHHHHHhhcCcceEEEecchhhhhccCC------C-ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHH
Q psy9135 130 RNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG------V-NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAH 202 (1107)
Q Consensus 130 re~l~eilFE~~~vpsv~~~~~~lls~y~~g------~-~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~ 202 (1107)
.+.+. -+++..|+.-..+..++++++++++ . ...+|||+|+++|+++.+.+|.+.. ....++||+++++.
T Consensus 153 v~~~~-~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~GG~~i~~~ 229 (377)
T 2ych_A 153 VAGVL-EALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLSGKDFTEA 229 (377)
T ss_dssp HHHHH-HHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCSHHHHHHH
T ss_pred HHHHH-HHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeechHHHHHHH
Confidence 34433 3458899999999999999988864 2 3469999999999999999999875 47799999999999
Q ss_pred HHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhceeec
Q psy9135 203 IRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVT 256 (1107)
Q Consensus 203 L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~v~ 256 (1107)
+.+. + ..+...+|++|+++++..
T Consensus 230 i~~~--------------~-----------------~~~~~~aE~~K~~~~~~~ 252 (377)
T 2ych_A 230 IARS--------------F-----------------NLDLLAAEEVKRTYGMAT 252 (377)
T ss_dssp HHHH--------------T-----------------TCCHHHHHHHHHHTC---
T ss_pred HHHH--------------h-----------------CCCHHHHHHHHhhccccc
Confidence 8775 1 124678899999887654
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=133.93 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=74.8
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------ceEEEEEeCCCceEEEEeec------
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVYE------ 181 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------~tglVVDiG~~~T~V~PV~d------ 181 (1107)
-..++++.|..+...+|+.+.+. .+..|+..+.++.+|.+|++++|. .+.+|+|+|+++|+|+.+.-
T Consensus 135 v~~~VitVPa~f~d~qr~a~~~A-~~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~ 213 (605)
T 2kho_A 135 VTEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGE 213 (605)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHH-HHTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTS
T ss_pred CcEEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCC
Confidence 45789999999999999888765 578899999999999999988764 34899999999999988763
Q ss_pred CEec-ccceEEecccHHHHHHHHHHh
Q psy9135 182 GVPV-LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 182 G~vl-~~~~~~~~iGG~~lt~~L~~l 206 (1107)
|..- .......++||.++++.|.+.
T Consensus 214 g~~~v~a~~gd~~lGG~d~D~~l~~~ 239 (605)
T 2kho_A 214 KTFEVLATNGDTHLGGEDFDSRLINY 239 (605)
T ss_dssp CEEEEEEEEEESSCSGGGTHHHHHHH
T ss_pred CeEEEEEECCCCCccHHHHHHHHHHH
Confidence 4332 122334689999999999988
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=119.54 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=74.0
Q ss_pred CCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCc--------eEEEEEeCCCceEEEEe--ec
Q psy9135 112 PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN--------TGLVLDIGYSEATLLPV--YE 181 (1107)
Q Consensus 112 ~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~--------tglVVDiG~~~T~V~PV--~d 181 (1107)
.....++++.|..+...+|+.+.+ ..+.-|+..+.++.+|.+++++++.. +.+|+|+|+++|+++-+ .+
T Consensus 148 ~~~~~~vitvPa~~~~~~r~~~~~-a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~ 226 (409)
T 4gni_A 148 KKVTSAVITIPTNFTEKQKAALIA-AAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRS 226 (409)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEET
T ss_pred CCCCeEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeC
Confidence 345679999999999999887665 46778999999999999999998764 59999999999999874 34
Q ss_pred CEecccc-eEEecccHHHHHHHHHHh
Q psy9135 182 GVPVLCA-WKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 182 G~vl~~~-~~~~~iGG~~lt~~L~~l 206 (1107)
|..-.-+ ....++||.++|+.|.+.
T Consensus 227 ~~~~v~~~~~~~~lGG~~~d~~i~~~ 252 (409)
T 4gni_A 227 GMYTILATVHDYEYHGIALDKVLIDH 252 (409)
T ss_dssp TEEEEEEEEEESSSSHHHHHHHHHHH
T ss_pred CeEEEEEecCCCCcCHHHHHHHHHHH
Confidence 3222112 234799999999999988
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8e-09 Score=127.87 Aligned_cols=91 Identities=18% Similarity=0.123 Sum_probs=75.5
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCC------------CceEEEEEeCCCceEEEEee--
Q psy9135 115 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG------------VNTGLVLDIGYSEATLLPVY-- 180 (1107)
Q Consensus 115 ~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g------------~~tglVVDiG~~~T~V~PV~-- 180 (1107)
..+++|.|..++..+|+.+.+ ..+..|++.+.++++|.++++++| ..+.+|+|+|+++|+|+-+.
T Consensus 139 ~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~ 217 (675)
T 3d2f_A 139 TDVCIAVPPWYTEEQRYNIAD-AARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFK 217 (675)
T ss_dssp CEEEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEE
T ss_pred ceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEec
Confidence 579999999999999998876 558889999999999999988754 24689999999999998776
Q ss_pred cCEe-cccceEEecccHHHHHHHHHHh
Q psy9135 181 EGVP-VLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 181 dG~v-l~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+|.. +.......++||+++++.|.+.
T Consensus 218 ~g~~~V~a~~gd~~lGG~d~D~~l~~~ 244 (675)
T 3d2f_A 218 KGQLKVLGTACDKHFGGRDFDLAITEH 244 (675)
T ss_dssp TTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHH
Confidence 6765 2333345789999999999988
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-09 Score=123.95 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCce---------EEEEEcCCCceEEEEEE--c
Q psy9135 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNT---------GLVLDIGYSEATLLPVY--E 875 (1107)
Q Consensus 807 ~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~t---------glVVDiG~~~T~v~PV~--d 875 (1107)
....++++.|...+..+|+.+.+. ++..|++.+.++++|.+|+++++... -+|+|+|.++|.++.+- +
T Consensus 157 ~~~~~vitvPa~~~~~~r~~~~~a-~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~ 235 (404)
T 3i33_A 157 KVHSAVITVPAYFNDSQRQATKDA-GTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIED 235 (404)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHH-HHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEET
T ss_pred CCCcEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeC
Confidence 345799999999999999988877 68899999999999999999887543 49999999999997664 4
Q ss_pred CEe-eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 876 GVP-VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 876 G~~-l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
|.. +.......++| |.++++.|.+.+.++
T Consensus 236 ~~~~v~~~~~~~~lG-G~~~d~~l~~~l~~~ 265 (404)
T 3i33_A 236 GIFEVKSTAGDTHLG-GEDFDNRMVSHLAEE 265 (404)
T ss_dssp TEEEEEEEEEETTCS-HHHHHHHHHHHHHHH
T ss_pred CeEEEEEEeCCCCCC-HHHHHHHHHHHHHHH
Confidence 332 22223346899 999999999988543
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=98.64 E-value=6.7e-07 Score=109.65 Aligned_cols=93 Identities=13% Similarity=0.051 Sum_probs=73.1
Q ss_pred CCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC------ceEEEEEeCCCceEEEEeecCEe--
Q psy9135 113 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVYEGVP-- 184 (1107)
Q Consensus 113 ~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~------~tglVVDiG~~~T~V~PV~dG~v-- 184 (1107)
.-..+++|.|..++..+|+.+- -..+..|++-+.++.+|.+|++++|. .+-+|+|+|++++.|+-+.-+..
T Consensus 134 ~v~~~VITVPa~f~~~qr~a~~-~Aa~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~ 212 (605)
T 4b9q_A 134 PVTEAVITVPAYFNDAQRQATK-DAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDG 212 (605)
T ss_dssp CCCEEEEEECTTCCHHHHHHHH-HHHHHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSS
T ss_pred CCCeEEEEECCCCCHHHHHHHH-HHHHHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCC
Confidence 3457899999999999998655 45678899999999999999988753 46799999999999997764431
Q ss_pred --c---ccceEEecccHHHHHHHHHHh
Q psy9135 185 --V---LCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 185 --l---~~~~~~~~iGG~~lt~~L~~l 206 (1107)
. .......++||.++++.|.+.
T Consensus 213 ~~~~evla~~gd~~lGG~d~D~~l~~~ 239 (605)
T 4b9q_A 213 EKTFEVLATNGDTHLGGEDFDSRLINY 239 (605)
T ss_dssp CEEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred CceEEEEEecCCCCcChHHHHHHHHHH
Confidence 1 112223678999999999988
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.8e-07 Score=108.61 Aligned_cols=96 Identities=17% Similarity=0.151 Sum_probs=76.3
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCc------eEEEEEcCCCceEEEEEEc------
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN------TGLVLDIGYSEATLLPVYE------ 875 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~------tglVVDiG~~~T~v~PV~d------ 875 (1107)
-..++++.|...+..+|+.+.+.. +..|+..+.++++|.+|++++|.. +.+|+|+|++++.|+-+.-
T Consensus 135 v~~~VitVPa~f~d~qr~a~~~A~-~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~ 213 (605)
T 2kho_A 135 VTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGE 213 (605)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHH-HTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTS
T ss_pred CcEEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCC
Confidence 457899999999999999888775 667999999999999999887643 4799999999999988763
Q ss_pred CEe-eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 876 GVP-VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 876 G~~-l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
|.. +.......++| |.++++.|.+.+.++
T Consensus 214 g~~~v~a~~gd~~lG-G~d~D~~l~~~l~~~ 243 (605)
T 2kho_A 214 KTFEVLATNGDTHLG-GEDFDSRLINYLVEE 243 (605)
T ss_dssp CEEEEEEEEEESSCS-GGGTHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCcc-HHHHHHHHHHHHHHH
Confidence 432 11122335799 999999999888664
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.3e-06 Score=103.83 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=77.6
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC-------ceEEEEEcCCCceEEEEEE--cCEe-
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-------NTGLVLDIGYSEATLLPVY--EGVP- 878 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~-------~tglVVDiG~~~T~v~PV~--dG~~- 878 (1107)
..++++.|...+..+|+.+.+. ++..|++.+.++++|.+|++++|. .+.+|+|+|++++.++-+. +|..
T Consensus 140 ~~~VitVPa~f~~~qr~a~~~A-~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~ 218 (554)
T 1yuw_A 140 TNAVVTVPAYFNDSQRQATKDA-GTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFE 218 (554)
T ss_dssp CEEEEEECTTCCHHHHHHHHHH-HHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEE
Confidence 5799999999999999988874 577899999999999999988763 4689999999999999776 5753
Q ss_pred eccceEEEeccchHHHHHHHHHHHHh
Q psy9135 879 VLCAWKDLSLGGGQSVESHIRSLLID 904 (1107)
Q Consensus 879 l~~~~~~~~~G~G~~lt~~L~~lL~~ 904 (1107)
+.......++| |+++++.|.+.+.+
T Consensus 219 v~a~~g~~~lG-G~d~d~~l~~~l~~ 243 (554)
T 1yuw_A 219 VKSTAGDTHLG-GEDFDNRMVNHFIA 243 (554)
T ss_dssp EEEEEEETTCS-HHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCC-HHHHHHHHHHHHHH
Confidence 22234446899 99999999988864
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-06 Score=99.94 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC-----ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHH
Q psy9135 127 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV-----NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEA 201 (1107)
Q Consensus 127 ~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~-----~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~ 201 (1107)
+...+.+.+ .+|.-|+.-..+..+|+++++++.. .+.+|||+|+++|+++-+.+|.+... ..+++||+++|+
T Consensus 167 ~~~v~n~~~-~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~~--~~i~~GG~~it~ 243 (419)
T 4a2a_A 167 LKVYEMFYN-FLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIKI--SYVPVGMKHVIK 243 (419)
T ss_dssp HHHHHHHHH-HHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEEE--EEESCCHHHHHH
T ss_pred HHHHHHHHH-HHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEEE--EecccHHHHHHH
Confidence 444444443 4678899999999999999988765 36899999999999999999998854 679999999999
Q ss_pred HHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHHHHHHHHHhcee
Q psy9135 202 HIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCF 254 (1107)
Q Consensus 202 ~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~iKe~~c~ 254 (1107)
-+.+. +. .+...+|++|.++..
T Consensus 244 dIa~~--------------l~-----------------~~~~~AE~iK~~~g~ 265 (419)
T 4a2a_A 244 DVSAV--------------LD-----------------TSFEESERLIITHGN 265 (419)
T ss_dssp HHHHH--------------HT-----------------CCHHHHHHHHHHHCC
T ss_pred HHHHH--------------HC-----------------CCHHHHHHHHHHhcc
Confidence 99876 21 357889999988753
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-06 Score=98.17 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=76.0
Q ss_pred CCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCc--------eEEEEEcCCCceEEEEE--Ec
Q psy9135 806 PKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN--------TGLVLDIGYSEATLLPV--YE 875 (1107)
Q Consensus 806 ~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~--------tglVVDiG~~~T~v~PV--~d 875 (1107)
.....++++.|...+..+|+.+.+.+ +.-|+..+.++++|.+|+++++.. +-+|+|+|.++|.++-+ .+
T Consensus 148 ~~~~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~ 226 (409)
T 4gni_A 148 KKVTSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRS 226 (409)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEET
T ss_pred CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeC
Confidence 34567999999999999998877765 567889999999999999988764 58999999999998775 23
Q ss_pred CEee-ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 876 GVPV-LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 876 G~~l-~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
|..- .......++| |.++|+.|.+.+.++
T Consensus 227 ~~~~v~~~~~~~~lG-G~~~d~~i~~~l~~~ 256 (409)
T 4gni_A 227 GMYTILATVHDYEYH-GIALDKVLIDHFSKE 256 (409)
T ss_dssp TEEEEEEEEEESSSS-HHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCCCCcC-HHHHHHHHHHHHHHH
Confidence 3211 1112346899 999999999998765
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-06 Score=94.21 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=115.9
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCCC--------------------ccceeecC--------CHHhhHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNK--------------------LRNLYEYK--------DADDLYGL 789 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~--------------------~~~~~~~~--------~~~~~~d~ 789 (1107)
.+-||+|+.++|+-. ++ .-...+||+++...... .+.+.+|+ +.+.+ +.
T Consensus 23 ~igiDlG~~~tkv~~-~~-g~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~~~l~~~~~~~-~~ 99 (346)
T 2fsj_A 23 VVGLDVGYGDTKVIG-VD-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIRVPQGDGRLAS-KE 99 (346)
T ss_dssp EEEEEECSSEEEEEC-GG-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCBCCSSTTCTTS-TT
T ss_pred EEEEecCCcceeEEe-cC-CCEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEccceecccCCCcccC-hh
Confidence 589999999999875 32 23557888887654321 12333442 23334 55
Q ss_pred HHHHHHHHHHhcc-ccCCCCceEE--EEeccCCchHHHHHHHHHHhcc-------------cCcceeeecccchhhhccc
Q psy9135 790 LIEFIRKIFFKYF-VTSPKDKRIV--VVESVLTPTVWRNTLAKVLFKH-------------YEVLSLLYVPSHLVSLCTL 853 (1107)
Q Consensus 790 le~i~~~~~~~~L-~~~~~~~~vl--l~e~~~~~~~~re~l~eiLFE~-------------~~vpsv~~~~~~~lalya~ 853 (1107)
.+.++.+.+.+.. .-......++ ++.|......+|+.+-+.+... +++..+.++++|.+|++++
T Consensus 100 ~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~ 179 (346)
T 2fsj_A 100 AFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYL 179 (346)
T ss_dssp THHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHh
Confidence 5666666665433 1112345689 9999988888898888886553 2367799999999999974
Q ss_pred --C-----C-ceEEEEEcCCCceEEEEEE--cCEeeccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 854 --G-----V-NTGLVLDIGYSEATLLPVY--EGVPVLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 854 --g-----~-~tglVVDiG~~~T~v~PV~--dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
+ . .+-+|||+|.++|.++-+. +|.++.......++| |+++++.+.+.++++
T Consensus 180 l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lG-g~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 180 LNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIG-VGDAISALSRKIAKE 240 (346)
T ss_dssp HHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCC-HHHHHHHHHHHHHHH
T ss_pred hccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchh-HHHHHHHHHHHHHHH
Confidence 2 1 3459999999999999888 787666556788999 999999999988765
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.3e-06 Score=93.60 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=56.8
Q ss_pred hhcCcceEEEecchhhhhccCC-----CceEEEEEeCCCceEEEEeecCEe-cccceEEecccHHHHHHHHHHh
Q psy9135 139 KHYEVLSLLYVPSHLVSLCTLG-----VNTGLVLDIGYSEATLLPVYEGVP-VLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 139 E~~~vpsv~~~~~~lls~y~~g-----~~tglVVDiG~~~T~V~PV~dG~v-l~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+.+++..+.+.+++++++++++ ..+.+|||+|+.+|+++-+.+|.+ +.......++||.++++.+.+.
T Consensus 136 ~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~ 209 (320)
T 2zgy_A 136 DTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDA 209 (320)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHH
T ss_pred cEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHH
Confidence 4556788999999999998753 357899999999999999999886 3334567799999999999988
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-05 Score=91.43 Aligned_cols=93 Identities=20% Similarity=0.246 Sum_probs=70.0
Q ss_pred HHHHHHHhcccCcceeeecccchhhhcccC------C-ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHH
Q psy9135 825 NTLAKVLFKHYEVLSLLYVPSHLVSLCTLG------V-NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESH 897 (1107)
Q Consensus 825 e~l~eiLFE~~~vpsv~~~~~~~lalya~g------~-~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~ 897 (1107)
+.+.+ +++..|+.-..+..++++++++++ + ...+|||+|++.|.++.+.+|.+.. ....++| |.++|+.
T Consensus 154 ~~~~~-~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~--~~~~~~G-G~~i~~~ 229 (377)
T 2ych_A 154 AGVLE-ALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA--VRVLTLS-GKDFTEA 229 (377)
T ss_dssp HHHHH-HHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE--EEEESCS-HHHHHHH
T ss_pred HHHHH-HHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE--EEeeech-HHHHHHH
Confidence 44433 347789999999999999988864 2 3459999999999999999998874 4678999 9999998
Q ss_pred HHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceeecc
Q psy9135 898 IRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTT 942 (1107)
Q Consensus 898 L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v~~ 942 (1107)
+.+.+ .++...++++|++++++..
T Consensus 230 i~~~~---------------------~~~~~~aE~~K~~~~~~~~ 253 (377)
T 2ych_A 230 IARSF---------------------NLDLLAAEEVKRTYGMATL 253 (377)
T ss_dssp HHHHT---------------------TCCHHHHHHHHHHTC----
T ss_pred HHHHh---------------------CCCHHHHHHHHhhcccccc
Confidence 87732 1223478999999887654
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.2e-06 Score=93.05 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=104.7
Q ss_pred EEEecCCceeEEeeecCcccccccccceeccCCc--------------------cccceeccCchh--------hHHHHH
Q psy9135 45 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN--------------------KLRNLYEYKDAD--------DLYGLL 96 (1107)
Q Consensus 45 iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~--------------------~~~~~~~~~~~~--------~~~~~l 96 (1107)
|-||.|+.++|+- .++ .-...+||+++..... ..+.+.+|+.+. .. +..
T Consensus 24 igiDlG~~~tkv~-~~~-g~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~~~l~~~~~~~-~~~ 100 (346)
T 2fsj_A 24 VGLDVGYGDTKVI-GVD-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIRVPQGDGRLAS-KEA 100 (346)
T ss_dssp EEEEECSSEEEEE-CGG-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCBCCSSTTCTTS-TTT
T ss_pred EEEecCCcceeEE-ecC-CCEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEccceecccCCCcccC-hhH
Confidence 3466666666663 232 2344677777654331 012333443221 22 344
Q ss_pred HHHHHHHHhhcc-ccCCCCCeEE--EEecCCCcHHHHHHHHHHHHhh-------------cCcceEEEecchhhhhccC-
Q psy9135 97 IEFIRKIFFKYF-VTSPKDKRIV--VVESVLTPTVWRNTLAKVLFKH-------------YEVLSLLYVPSHLVSLCTL- 159 (1107)
Q Consensus 97 e~i~~~~~~~~L-~~~~~~~~vl--lte~~~~~~~~re~l~eilFE~-------------~~vpsv~~~~~~lls~y~~- 159 (1107)
+.++.+.+.+.. ........++ ++.|......+|+.+-+.+... +++..+.+.++|.+|++++
T Consensus 101 ~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~AAa~~~l 180 (346)
T 2fsj_A 101 FPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLL 180 (346)
T ss_dssp HHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHHHHHHHhh
Confidence 555666664432 1112345688 9999887788888888875543 2367799999999999974
Q ss_pred -C-----C-ceEEEEEeCCCceEEEEee--cCEecccceEEecccHHHHHHHHHHh
Q psy9135 160 -G-----V-NTGLVLDIGYSEATLLPVY--EGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 160 -g-----~-~tglVVDiG~~~T~V~PV~--dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
+ . .+.+|||+|+.+|.++-+. +|.++.......++||+++++.+.+.
T Consensus 181 ~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~ 236 (346)
T 2fsj_A 181 NQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRK 236 (346)
T ss_dssp HHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHH
T ss_pred ccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHH
Confidence 2 1 3459999999999999998 88866655678899999999999887
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-06 Score=96.64 Aligned_cols=163 Identities=9% Similarity=-0.060 Sum_probs=103.7
Q ss_pred eEEEecCCceeEEeee--c---CcccccccccceeccCCcc-------c------cceeccCchh-----hHH--HHHHH
Q psy9135 44 GVVLDIGSKYTKYGIF--G---SFQPKGFIKSQVKDPHTNK-------L------RNLYEYKDAD-----DLY--GLLIE 98 (1107)
Q Consensus 44 ~iViD~GS~~~K~G~a--g---e~~P~~i~ps~v~~~~~~~-------~------~~~~~~~~~~-----~~~--~~le~ 98 (1107)
.|-||.|-+++|+-.. | +..-+..|||.++..+... . +.+++|+.+. .++ +...-
T Consensus 9 iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~~~~~~~~k~~~~~~~ 88 (329)
T 4apw_A 9 VMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETSKTNLIHKL 88 (329)
T ss_dssp EEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSSSCSGGGCCCTTHHHH
T ss_pred EEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCcccccccccCCcCchhHHH
Confidence 4568888888887542 2 1123457899988654211 0 2334444221 111 12233
Q ss_pred HHHHHHhhccccC-CCCCeEEEEecCCCc--HHHHHHHHHHHHhh-------------cCcceEEEecchhhhhccC---
Q psy9135 99 FIRKIFFKYFVTS-PKDKRIVVVESVLTP--TVWRNTLAKVLFKH-------------YEVLSLLYVPSHLVSLCTL--- 159 (1107)
Q Consensus 99 i~~~~~~~~L~~~-~~~~~vllte~~~~~--~~~re~l~eilFE~-------------~~vpsv~~~~~~lls~y~~--- 159 (1107)
++..++...+... ..+-.+++.-|...- ...|+++.+.|-.. +.+..+.+.++++.++|..
T Consensus 89 L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~~~ 168 (329)
T 4apw_A 89 AAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQEN 168 (329)
T ss_dssp HHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSCCC
T ss_pred HHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcchh
Confidence 3444443434332 122345555554322 23567777776632 2356799999999999876
Q ss_pred -CCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 160 -GVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 160 -g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
-..+.+|||||+.+|+++.+.+|.+.......+++||.++++.+.+.
T Consensus 169 ~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~ 216 (329)
T 4apw_A 169 FKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDA 216 (329)
T ss_dssp CTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTS
T ss_pred hccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHH
Confidence 23678999999999999999999998777788999999999999988
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.3e-05 Score=99.27 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=76.3
Q ss_pred ceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------------ceEEEEEcCCCceEEEEEE--
Q psy9135 809 KRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------------NTGLVLDIGYSEATLLPVY-- 874 (1107)
Q Consensus 809 ~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------------~tglVVDiG~~~T~v~PV~-- 874 (1107)
..++|+.|...+..+|+.+.+.. +..|++.+.++++|.+|++++|. .+.+|+|+|+++|.|+-+.
T Consensus 139 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~ 217 (675)
T 3d2f_A 139 TDVCIAVPPWYTEEQRYNIADAA-RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFK 217 (675)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEE
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEec
Confidence 57899999999999999888755 67899999999999999887642 4689999999999998775
Q ss_pred cCEe-eccceEEEeccchHHHHHHHHHHHHh
Q psy9135 875 EGVP-VLCAWKDLSLGGGQSVESHIRSLLID 904 (1107)
Q Consensus 875 dG~~-l~~~~~~~~~G~G~~lt~~L~~lL~~ 904 (1107)
+|.. +.......++| |.++++.|.+.+.+
T Consensus 218 ~g~~~V~a~~gd~~lG-G~d~D~~l~~~l~~ 247 (675)
T 3d2f_A 218 KGQLKVLGTACDKHFG-GRDFDLAITEHFAD 247 (675)
T ss_dssp TTEEEEEEEEEETTCS-HHHHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCcc-HHHHHHHHHHHHHH
Confidence 5654 22223346899 99999999999864
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=90.97 Aligned_cols=92 Identities=16% Similarity=0.010 Sum_probs=74.9
Q ss_pred CeEEEEecCCCcHHHH-HHHHHHHHhh-----------cCcceEEEecchhhhhccCC-----------CceEEEEEeCC
Q psy9135 115 KRIVVVESVLTPTVWR-NTLAKVLFKH-----------YEVLSLLYVPSHLVSLCTLG-----------VNTGLVLDIGY 171 (1107)
Q Consensus 115 ~~vllte~~~~~~~~r-e~l~eilFE~-----------~~vpsv~~~~~~lls~y~~g-----------~~tglVVDiG~ 171 (1107)
-.+++..|.-.-...| +.+.+.+... +.+..+.+.+++++|+++++ ....+|||||+
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 3567777776555555 5677777633 23478999999999999875 45679999999
Q ss_pred CceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 172 SEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 172 ~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
.+|.++.+.+|.+.......+++||..+++.+.+.
T Consensus 194 gTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~ 228 (355)
T 3js6_A 194 GTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASH 228 (355)
T ss_dssp SCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHH
T ss_pred CcEEEEEEcCCEEccccccCcchHHHHHHHHHHHH
Confidence 99999999999999888889999999999999998
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=97.82 E-value=8.7e-05 Score=90.92 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=73.9
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC------ceEEEEEcCCCceEEEEEEcCE----
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV------NTGLVLDIGYSEATLLPVYEGV---- 877 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~------~tglVVDiG~~~T~v~PV~dG~---- 877 (1107)
-..++|+.|...+..+|+.+.+.. +.-|++-+.++++|.+|++++|. .+-+|+|+|.+++.++-+.-+.
T Consensus 135 v~~~VITVPa~f~~~qr~a~~~Aa-~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~ 213 (605)
T 4b9q_A 135 VTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGE 213 (605)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSC
T ss_pred CCeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCC
Confidence 457899999999999998776664 56788999999999999988753 4578999999999998775443
Q ss_pred ee---ccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 878 PV---LCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 878 ~l---~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
.. .......++| |.++++.|.+.|.++
T Consensus 214 ~~~evla~~gd~~lG-G~d~D~~l~~~l~~~ 243 (605)
T 4b9q_A 214 KTFEVLATNGDTHLG-GEDFDSRLINYLVEE 243 (605)
T ss_dssp EEEEEEEEEEETTCS-HHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCCCcC-hHHHHHHHHHHHHHH
Confidence 11 1112224678 999999999888754
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00057 Score=76.82 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=58.8
Q ss_pred cccCcceeeecccchhhhcccC-----CceEEEEEcCCCceEEEEEEcCEe-eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 833 KHYEVLSLLYVPSHLVSLCTLG-----VNTGLVLDIGYSEATLLPVYEGVP-VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 833 E~~~vpsv~~~~~~~lalya~g-----~~tglVVDiG~~~T~v~PV~dG~~-l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
+.+++..+.+.+++.+++++.+ ..+.+|||+|++.|.++-+.+|.+ +.......++| |.++++.+.+.+.++
T Consensus 136 ~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lG-g~~~~~~I~~~l~~~ 213 (320)
T 2zgy_A 136 DTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLG-VSLVTSAVKDALSLA 213 (320)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCC-THHHHHHHHHHTTCC
T ss_pred cEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCcccc-HHHHHHHHHHHHHHc
Confidence 4556788999999999998753 346899999999999999999876 43345667999 999999999988653
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0029 Score=72.11 Aligned_cols=164 Identities=16% Similarity=0.054 Sum_probs=109.0
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCC------------C---------ccc-eeecCCHHhh-------H-
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN------------K---------LRN-LYEYKDADDL-------Y- 787 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~------------~---------~~~-~~~~~~~~~~-------~- 787 (1107)
.|=||+|-+++|+ ..++ =...|||.++..... + ... .++|+.+... +
T Consensus 6 iigiD~G~~~~K~-~~~~--~~~~fPS~v~~~~~~~~~l~~~~~~~~~~~~v~v~~~~~~~y~vG~~A~~~~~~~~~~~~ 82 (355)
T 3js6_A 6 VMALDFGNGFVKG-KIND--EKFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNTGKDTAS 82 (355)
T ss_dssp EEEEEECSSEEEE-EETT--EEEEEESEEEECCSSCCSSTTTSCCCCSCEEEEETTCTTCCEEESTTHHHHCSCCEECCC
T ss_pred EEEEEcCCCcEEE-ecCC--eEEEeceeeeecccCcccccccccCCCCceEEEEecCCeEEEEEchhhhhcCcccccccc
Confidence 5789999999995 4443 256788888643211 0 023 5566543210 0
Q ss_pred -------HHHHHHHHHHHH---hccccCCCCceEEEEeccCCchHHH-HHHHHHHhcc-----------cCcceeeeccc
Q psy9135 788 -------GLLIEFIRKIFF---KYFVTSPKDKRIVVVESVLTPTVWR-NTLAKVLFKH-----------YEVLSLLYVPS 845 (1107)
Q Consensus 788 -------d~le~i~~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r-e~l~eiLFE~-----------~~vpsv~~~~~ 845 (1107)
+....++..++. ..+..+..+-.+++..|.-.....| +++.+.+-.. +.+..+.+.++
T Consensus 83 ~~~k~~~~~~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE 162 (355)
T 3js6_A 83 TNDRYDIKSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQ 162 (355)
T ss_dssp STTGGGSHHHHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEH
T ss_pred cCCcccCHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeC
Confidence 112222222221 1110011233577778877666665 5788887643 23478999999
Q ss_pred chhhhcccC-----------CceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 846 HLVSLCTLG-----------VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 846 ~~lalya~g-----------~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
++.|+++.+ ..+-+|||+|+.+|.++-+.+|.+.......+++| |..+++.+.+.++++
T Consensus 163 ~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G-~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 163 PMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKG-TIDFYKRIASHVSKK 232 (355)
T ss_dssp HHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCC-HHHHHHHHHHHTC--
T ss_pred cHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchH-HHHHHHHHHHHHHHh
Confidence 999999875 34578999999999999998999988888889999 999999999999765
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0006 Score=76.96 Aligned_cols=167 Identities=10% Similarity=-0.055 Sum_probs=111.3
Q ss_pred ceEEEecCcceEEEecc--C---CCCccEEEecceeccCCCC-------------ccceeecCCHH-----hh--HHHHH
Q psy9135 737 TGVVLDIGSKYTKYGIF--G---SFQPKGFIKSQVKDPHTNK-------------LRNLYEYKDAD-----DL--YGLLI 791 (1107)
Q Consensus 737 ~~vViD~Gs~~iK~G~a--g---e~~P~~i~ps~vg~~~~~~-------------~~~~~~~~~~~-----~~--~d~le 791 (1107)
-.|-||+|-+++|+-.. | +..-+..|||.++...... -+.+++|+++. .+ -+...
T Consensus 8 ~iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~~~~~~~~k~~~~~~ 87 (329)
T 4apw_A 8 YVMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETSKTNLIHK 87 (329)
T ss_dssp EEEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSSSCSGGGCCCTTHHH
T ss_pred eEEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCcccccccccCCcCchhHH
Confidence 46789999999998653 2 2334577999987643211 03444554221 11 12233
Q ss_pred HHHHHHHHhccccC-CCCceEEEEeccCCch--HHHHHHHHHHhcc-------------cCcceeeecccchhhhcccC-
Q psy9135 792 EFIRKIFFKYFVTS-PKDKRIVVVESVLTPT--VWRNTLAKVLFKH-------------YEVLSLLYVPSHLVSLCTLG- 854 (1107)
Q Consensus 792 ~i~~~~~~~~L~~~-~~~~~vll~e~~~~~~--~~re~l~eiLFE~-------------~~vpsv~~~~~~~lalya~g- 854 (1107)
-++..++-..++.. ..+..+++..|...-. +.|+++.+.|-.. +.+..+.+.|+++.++|...
T Consensus 88 ~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~~ 167 (329)
T 4apw_A 88 LAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQE 167 (329)
T ss_dssp HHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSCC
T ss_pred HHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcch
Confidence 34445553444432 1223456666654432 3577777777632 33567899999999998762
Q ss_pred ---CceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHh
Q psy9135 855 ---VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLID 904 (1107)
Q Consensus 855 ---~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~ 904 (1107)
..+-+|||+|+.+|.++-+.+|.+.......+++| |..+++.+.+.+++
T Consensus 168 ~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G-~~~~~~~i~~~l~~ 219 (329)
T 4apw_A 168 NFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHG-VKDLIIRVGDALTD 219 (329)
T ss_dssp CCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCC-HHHHHHHHHTSSSS
T ss_pred hhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhH-HHHHHHHHHHHHHh
Confidence 34678999999999999999999987777889999 99999999988876
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0091 Score=69.54 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhcccCcceeeecccchhhhcccCCc-----eEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHH
Q psy9135 821 TVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVN-----TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVE 895 (1107)
Q Consensus 821 ~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~-----tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt 895 (1107)
+...+.+.++ +|.-|+.-..+..+|+++.+++... ..+|||+|++.|.++-+.+|.+.. ....++| |+++|
T Consensus 167 ~~~v~n~~~~-~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~~--~~~i~~G-G~~it 242 (419)
T 4a2a_A 167 LKVYEMFYNF-LQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPIK--ISYVPVG-MKHVI 242 (419)
T ss_dssp HHHHHHHHHH-HHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEEE--EEEESCC-HHHHH
T ss_pred HHHHHHHHHH-HHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEEE--EEecccH-HHHHH
Confidence 3444555544 4667888888999999999887643 589999999999999999998874 4678999 99999
Q ss_pred HHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhceee
Q psy9135 896 SHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV 940 (1107)
Q Consensus 896 ~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~c~v 940 (1107)
+.+.+.+. ++.+.++.+|.++...
T Consensus 243 ~dIa~~l~---------------------~~~~~AE~iK~~~g~a 266 (419)
T 4a2a_A 243 KDVSAVLD---------------------TSFEESERLIITHGNA 266 (419)
T ss_dssp HHHHHHHT---------------------CCHHHHHHHHHHHCCS
T ss_pred HHHHHHHC---------------------CCHHHHHHHHHHhccC
Confidence 98887652 2344789999987654
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.058 Score=63.01 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=52.6
Q ss_pred HHHHHHHhhcCcceEEEecchhhhhccC----CC-ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 132 TLAKVLFKHYEVLSLLYVPSHLVSLCTL----GV-NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 132 ~l~eilFE~~~vpsv~~~~~~lls~y~~----g~-~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
++.+.+=++++++-=.=.-++++|.+++ ++ .-.++||+|+.+|++.-+.+|..+.- ..+++||+++|..+..-
T Consensus 372 NI~~cVer~~gL~veV~g~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~a--~~ip~gG~~VT~DIA~~ 449 (610)
T 2d0o_A 372 MIAREIEQKLNIDVQIGGAEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDIIA--THLAGAGDMVTMIIARE 449 (610)
T ss_dssp HHHHHHHHHHCCEEEEEEEHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEEE--EEEECSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcceeccccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHH
Confidence 3444444444442111116777777764 33 45789999999999999999998854 78999999999999887
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.038 Score=64.78 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=46.0
Q ss_pred cchhhhhccC----CC-ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHh
Q psy9135 150 PSHLVSLCTL----GV-NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 150 ~~~lls~y~~----g~-~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
-++++|.+++ ++ .-.++||+|+.+|++.-+.+|....- ..+++||+++|..+..-
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~a--~~ip~gG~~VT~DIA~~ 451 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITA--VHLAGAGNMVSLLIKTE 451 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEEE--EEEECCHHHHHHHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEEE--EEeccchHHHHHHHHHH
Confidence 6677777764 33 45789999999999999999988854 78999999999999887
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.73 Score=51.21 Aligned_cols=77 Identities=8% Similarity=-0.075 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhhcCcceEEEe--cchhhhhcc----CC-CceEEEEEeCCCceEEEEeecCEecccceEEecccHHH
Q psy9135 126 PTVWRNTLAKVLFKHYEVLSLLYV--PSHLVSLCT----LG-VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQS 198 (1107)
Q Consensus 126 ~~~~re~l~eilFE~~~vpsv~~~--~~~lls~y~----~g-~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~ 198 (1107)
.-.+++.+.+.+-+..|++-=.+. +++.++..| .+ ..+++|||||.++|.++-..+|.+.. ...+++|+-.
T Consensus 95 ~A~N~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~~G~v~ 172 (315)
T 1t6c_A 95 RAKNAEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVRE--VISLPIGIVN 172 (315)
T ss_dssp TSTTHHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEEE--EEEECCCHHH
T ss_pred cCcCHHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCceee--EEEEeccHHH
Confidence 345667788888888888633332 333343322 23 56899999999999999998888754 4789999999
Q ss_pred HHHHHH
Q psy9135 199 VEAHIR 204 (1107)
Q Consensus 199 lt~~L~ 204 (1107)
+++.+.
T Consensus 173 l~e~~~ 178 (315)
T 1t6c_A 173 LTETFF 178 (315)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 988764
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=91.17 E-value=1 Score=49.92 Aligned_cols=76 Identities=12% Similarity=0.125 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhhcCcceEEE--ecchhhhhcc------CCCceEEEEEeCCCceEEEEeecCEecccceEEecccHHH
Q psy9135 127 TVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCT------LGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQS 198 (1107)
Q Consensus 127 ~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~------~g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~ 198 (1107)
-.+++.+.+-+-+..|++-=.+ -.++-++.+| ....+++|||||.++|.++-+.+|.+.. ...+++|.-.
T Consensus 88 A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vr 165 (315)
T 3mdq_A 88 GSNKQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEILW--KQSFEIGGQR 165 (315)
T ss_dssp CTTHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEEE--EEEESCCHHH
T ss_pred CcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEee--eEEEechhhH
Confidence 3456677778888888863333 2344443333 2236799999999999999999987764 4789999988
Q ss_pred HHHHHH
Q psy9135 199 VEAHIR 204 (1107)
Q Consensus 199 lt~~L~ 204 (1107)
+++.+.
T Consensus 166 l~e~f~ 171 (315)
T 3mdq_A 166 LIDRFH 171 (315)
T ss_dssp HHHHSC
T ss_pred HHHHhc
Confidence 887654
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=90.38 E-value=1.5 Score=48.63 Aligned_cols=74 Identities=8% Similarity=-0.028 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhcccCcceeeecc---cchhhhcc----cC-CceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchH
Q psy9135 821 TVWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCT----LG-VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQ 892 (1107)
Q Consensus 821 ~~~re~l~eiLFE~~~vpsv~~~~---~~~lalya----~g-~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~ 892 (1107)
-.+++.+.+.+-+..|++ +-++. ++.++..| .+ ..+++|||+|.++|.++-..+|.+. ....+|+| +-
T Consensus 96 A~N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G-~v 171 (315)
T 1t6c_A 96 AKNAEEFLERVKREVGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIG-IV 171 (315)
T ss_dssp STTHHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEE--EEEEECCC-HH
T ss_pred CcCHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCcee--eEEEEecc-HH
Confidence 345667777777777775 33433 23333322 23 5679999999999999998888765 46789999 77
Q ss_pred HHHHHH
Q psy9135 893 SVESHI 898 (1107)
Q Consensus 893 ~lt~~L 898 (1107)
.+++.+
T Consensus 172 ~l~e~~ 177 (315)
T 1t6c_A 172 NLTETF 177 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 766644
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=89.55 E-value=0.74 Score=51.81 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcccCcceeeecc---cchhhhccc--------CCceEEEEEcCCCceEEEEEEc--CEee--ccceEEE
Q psy9135 822 VWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCTL--------GVNTGLVLDIGYSEATLLPVYE--GVPV--LCAWKDL 886 (1107)
Q Consensus 822 ~~re~l~eiLFE~~~vpsv~~~~---~~~lalya~--------g~~tglVVDiG~~~T~v~PV~d--G~~l--~~~~~~~ 886 (1107)
.+++.+.+-+-+..|++ +-+++ ++.++..|. ...+++|||+|.++|.++-+.+ +.+. ......+
T Consensus 102 ~N~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~Sl 180 (343)
T 3cer_A 102 ENREEFEDEIERILGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSM 180 (343)
T ss_dssp TTHHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEE
T ss_pred cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEE
Confidence 45566777777777765 33332 333333332 2356999999999999997766 4331 1256789
Q ss_pred eccchHHHHHHH
Q psy9135 887 SLGGGQSVESHI 898 (1107)
Q Consensus 887 ~~G~G~~lt~~L 898 (1107)
|+| +..+++.+
T Consensus 181 plG-~v~lt~~~ 191 (343)
T 3cer_A 181 NIG-SVRMTERH 191 (343)
T ss_dssp SCC-HHHHHHHT
T ss_pred ehh-HHHHHHHh
Confidence 999 87777654
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=88.71 E-value=1.6 Score=49.07 Aligned_cols=77 Identities=13% Similarity=0.071 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhcCcceEEE--ecchhhhhccC--------CCceEEEEEeCCCceEEEEeec--CEec--ccceEEec
Q psy9135 128 VWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCTL--------GVNTGLVLDIGYSEATLLPVYE--GVPV--LCAWKDLS 193 (1107)
Q Consensus 128 ~~re~l~eilFE~~~vpsv~~--~~~~lls~y~~--------g~~tglVVDiG~~~T~V~PV~d--G~vl--~~~~~~~~ 193 (1107)
.+++.+.+-+-+..|++-=.+ -.++.++..|. ....++|||||.++|.++-+.+ +.+. ......++
T Consensus 102 ~N~~~fl~~v~~~tGi~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~Slp 181 (343)
T 3cer_A 102 ENREEFEDEIERILGVRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSMN 181 (343)
T ss_dssp TTHHHHHHHHHHHHSSCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEES
T ss_pred cCHHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEEe
Confidence 556778888888888863333 23344444432 2356999999999999998877 4431 12467899
Q ss_pred ccHHHHHHHHH
Q psy9135 194 LGGQSVEAHIR 204 (1107)
Q Consensus 194 iGG~~lt~~L~ 204 (1107)
+|+..+++.+.
T Consensus 182 lG~v~lt~~~~ 192 (343)
T 3cer_A 182 IGSVRMTERHL 192 (343)
T ss_dssp CCHHHHHHHTC
T ss_pred hhHHHHHHHhc
Confidence 99999988763
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=88.30 E-value=0.95 Score=50.27 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcccCcceeeec---ccchhhhc------ccCCceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchH
Q psy9135 822 VWRNTLAKVLFKHYEVLSLLYV---PSHLVSLC------TLGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQ 892 (1107)
Q Consensus 822 ~~re~l~eiLFE~~~vpsv~~~---~~~~laly------a~g~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~ 892 (1107)
.+++.+.+-+-+..|++ +-++ .++.++.+ .....+++|+|+|.++|.++-+.+|.+. ....+|+| .-
T Consensus 89 ~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG-~v 164 (315)
T 3mdq_A 89 SNKQVLIDRIKKEVNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEIL--WKQSFEIG-GQ 164 (315)
T ss_dssp TTHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEE--EEEEESCC-HH
T ss_pred cCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEe--eeEEEech-hh
Confidence 45566666777777775 3333 23333322 2223579999999999999999888665 46789999 55
Q ss_pred HHHH
Q psy9135 893 SVES 896 (1107)
Q Consensus 893 ~lt~ 896 (1107)
.+++
T Consensus 165 rl~e 168 (315)
T 3mdq_A 165 RLID 168 (315)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.25 E-value=1.9 Score=51.15 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHhhcCcceEEE--ecchhhhhcc----CCCceEEEEEeCCCceEEEEeecCEecccceEEecccHHHH
Q psy9135 126 PTVWRNTLAKVLFKHYEVLSLLY--VPSHLVSLCT----LGVNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSV 199 (1107)
Q Consensus 126 ~~~~re~l~eilFE~~~vpsv~~--~~~~lls~y~----~g~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~l 199 (1107)
.-.+++.+.+-+-+..|++-=.+ -.++-++..| .....++|||||.++|.++-+.+|.+.. ...+++|.-.+
T Consensus 98 ~A~N~~~fl~~i~~~tG~~ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl 175 (508)
T 3hi0_A 98 EAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGE--GITLPLGGLRL 175 (508)
T ss_dssp HSTTHHHHHHHHHHHHTSCEEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEECC--CEEESCCHHHH
T ss_pred cCcCHHHHHHHHHHHHCCCeEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeeee--EEEecceEEeh
Confidence 34556777778888888873333 2344444443 2345789999999999999999998864 48899999988
Q ss_pred HHH
Q psy9135 200 EAH 202 (1107)
Q Consensus 200 t~~ 202 (1107)
++.
T Consensus 176 ~e~ 178 (508)
T 3hi0_A 176 SEQ 178 (508)
T ss_dssp HHH
T ss_pred hhc
Confidence 875
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=85.77 E-value=1.1 Score=53.13 Aligned_cols=78 Identities=15% Similarity=0.041 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHhhcCcceEEEe--cchhhhhccC----C-CceEEEEEeCCCceEEEEeecCEecccceEEecccHHH
Q psy9135 126 PTVWRNTLAKVLFKHYEVLSLLYV--PSHLVSLCTL----G-VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQS 198 (1107)
Q Consensus 126 ~~~~re~l~eilFE~~~vpsv~~~--~~~lls~y~~----g-~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~ 198 (1107)
.-.+++.+.+-+-+..|++-=.+. .++-++..|. . ...++|||||.++|.++-..+|.+.. ...+++|.-.
T Consensus 94 ~A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vr 171 (513)
T 1u6z_A 94 QALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL--VESRRMGCVS 171 (513)
T ss_dssp HCTTHHHHHHHHTTTCSSCEEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEEE--EEEESCCHHH
T ss_pred cCcCHHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeeeE--EEEEeccHHH
Confidence 335567788888888898643332 3344444431 2 23799999999999999988888763 4789999999
Q ss_pred HHHHHHH
Q psy9135 199 VEAHIRR 205 (1107)
Q Consensus 199 lt~~L~~ 205 (1107)
+++.+..
T Consensus 172 lte~f~~ 178 (513)
T 1u6z_A 172 FAQLYFP 178 (513)
T ss_dssp HHHHHSG
T ss_pred HHHHHcc
Confidence 9887643
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.36 E-value=4.5 Score=47.91 Aligned_cols=144 Identities=14% Similarity=0.084 Sum_probs=79.5
Q ss_pred ccceEEEecCcceEEEeccCCC--CccEEEecceeccCCCCccceeecCCH-----------HhhHHHHHHHHHHHHHhc
Q psy9135 735 LKTGVVLDIGSKYTKYGIFGSF--QPKGFIKSQVKDPHTNKLRNLYEYKDA-----------DDLYGLLIEFIRKIFFKY 801 (1107)
Q Consensus 735 ~~~~vViD~Gs~~iK~G~age~--~P~~i~ps~vg~~~~~~~~~~~~~~~~-----------~~~~d~le~i~~~~~~~~ 801 (1107)
.+..-|||+||.++|.-.+.-. .++.+..-. . .+--|.+. ..-++.+.++-+ .+ +.
T Consensus 14 ~~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k--~-------~vrLg~gl~~~g~Ls~eai~r~~~~L~~F~~-~~-~~ 82 (508)
T 3hi0_A 14 LAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEK--V-------LCGLGKGLALTGRMHEEGVTRALMALRRFHV-LS-EQ 82 (508)
T ss_dssp CCCEEEEEECSSEEEEEEESCSSSSCCEEEEEE--E-------ECCTTTTHHHHSSCCHHHHHHHHHHHHHHHH-HH-HH
T ss_pred CCeEEEEEECCccEEEEEEEEcCCCceEEEEEe--E-------EeecccCccccCCcCHHHHHHHHHHHHHHHH-HH-Hh
Confidence 3457799999999998876432 343332110 0 01112221 222344443332 22 22
Q ss_pred cccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecc---cchhhhcc----cCCceEEEEEcCCCceEEEEEE
Q psy9135 802 FVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCT----LGVNTGLVLDIGYSEATLLPVY 874 (1107)
Q Consensus 802 L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~---~~~lalya----~g~~tglVVDiG~~~T~v~PV~ 874 (1107)
+++ ++..+ +.-+..-.-.+++.+.+-+-+..|++ +-+++ ++-++..| .....++|||||.++|.++-+-
T Consensus 83 ~~v--~~v~~-vATsA~R~A~N~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~ 158 (508)
T 3hi0_A 83 AQA--QKLYV-LATAAAREAENGPDFIREAEAILGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIK 158 (508)
T ss_dssp TTC--SEEEE-EECTHHHHSTTHHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEE
T ss_pred CCC--CeEEE-EeeHHHHcCcCHHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEee
Confidence 332 23222 22223323345566666677777775 33332 33333332 2335689999999999999999
Q ss_pred cCEeeccceEEEeccchHHHHH
Q psy9135 875 EGVPVLCAWKDLSLGGGQSVES 896 (1107)
Q Consensus 875 dG~~l~~~~~~~~~G~G~~lt~ 896 (1107)
+|.+. ....+|+| .-.+++
T Consensus 159 ~~~~~--~~~Sl~lG-~vrl~e 177 (508)
T 3hi0_A 159 DKSCG--EGITLPLG-GLRLSE 177 (508)
T ss_dssp TTEEC--CCEEESCC-HHHHHH
T ss_pred CCeee--eEEEecce-EEehhh
Confidence 88775 45788999 766665
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=1.9 Score=51.19 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcccCcceeeecc---cchhhhcc----cC-CceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchH
Q psy9135 821 TVWRNTLAKVLFKHYEVLSLLYVP---SHLVSLCT----LG-VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQ 892 (1107)
Q Consensus 821 ~~~re~l~eiLFE~~~vpsv~~~~---~~~lalya----~g-~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~ 892 (1107)
-.+++.+.+-+-+..|++ +-+++ ++-++..| .. ...++|||||.++|.++-..+|.+. ....+|+| .-
T Consensus 95 A~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG-~v 170 (513)
T 1u6z_A 95 ALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMG-CV 170 (513)
T ss_dssp CTTHHHHHHHHTTTCSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEE--EEEEESCC-HH
T ss_pred CcCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeee--EEEEEecc-HH
Confidence 355677777788888875 33333 23333332 11 2269999999999999988888765 45789999 76
Q ss_pred HHHHHH
Q psy9135 893 SVESHI 898 (1107)
Q Consensus 893 ~lt~~L 898 (1107)
.+++.+
T Consensus 171 rlte~f 176 (513)
T 1u6z_A 171 SFAQLY 176 (513)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=83.99 E-value=0.42 Score=51.86 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhH
Q psy9135 455 NIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGG 534 (1107)
Q Consensus 455 gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Gg 534 (1107)
++.+.|.+.+... -.|....++|+|+||.+..|+++++|++++. .+++.++ +|.+..=+||
T Consensus 188 ~~~~~v~~~l~~~--~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g----------------~~~~~p~-~p~~~~A~GA 248 (276)
T 4ehu_A 188 GIHTSVAKRVSSL--VKRIGVQRNVVMVGGVARNSGIVRAMAREIN----------------TEIIVPD-IPQLTGALGA 248 (276)
T ss_dssp HHHHHHHHHHHHH--HHHHCCCSSEEEESGGGGCHHHHHHHHHHHT----------------SCEECCS-SGGGHHHHHH
T ss_pred HHHHHHHHHHHHH--HHhcccCCeEEEecCccchHHHHHHHHHHHC----------------CCeeeCC-CcchHHHHHH
Confidence 5666666655432 2344455789999999999999999987762 1234444 7888877999
Q ss_pred HhhcC
Q psy9135 535 AIFAA 539 (1107)
Q Consensus 535 silas 539 (1107)
+++|.
T Consensus 249 Al~A~ 253 (276)
T 4ehu_A 249 ALYAF 253 (276)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99984
|
| >3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* | Back alignment and structure |
|---|
Probab=82.56 E-value=9.1 Score=43.00 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.5
Q ss_pred ceEEEEEeCCCceEEEEeec--CEecccceEEecccHH
Q psy9135 162 NTGLVLDIGYSEATLLPVYE--GVPVLCAWKDLSLGGQ 197 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V~PV~d--G~vl~~~~~~~~iGG~ 197 (1107)
.+.+|+|+|..+|.++-..+ +.+.......+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCc
Confidence 47999999999999997754 3444444678888883
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1107 | ||||
| d2fxua2 | 225 | c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI | 1e-19 | |
| d2fxua2 | 225 | c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI | 3e-19 | |
| d2fxua2 | 225 | c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI | 8e-15 | |
| d1k8ka2 | 258 | c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 | 3e-15 | |
| d1k8ka2 | 258 | c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 | 1e-14 | |
| d1k8ka2 | 258 | c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 | 1e-12 | |
| d1k8ka1 | 158 | c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { | 2e-11 | |
| d1k8ka1 | 158 | c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { | 1e-10 | |
| d1k8kb1 | 190 | c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 | 9e-11 | |
| d1k8kb1 | 190 | c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 | 2e-08 | |
| d1k8kb1 | 190 | c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 | 2e-07 | |
| d2fxua1 | 140 | c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: | 1e-10 | |
| d2fxua1 | 140 | c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: | 2e-09 |
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Score = 87.1 bits (215), Expect = 1e-19
Identities = 49/240 (20%), Positives = 86/240 (35%), Gaps = 34/240 (14%)
Query: 857 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYI 916
TG+VLD G +P+YEG + A L L G+ + ++ +L + +
Sbjct: 3 TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDL-AGRDLTDYLMKILTERGYSFVTTA--- 58
Query: 917 VTVEDVENLSDSIIEDIKVCSCFV-TTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVS 975
I+ DIK C+V E AA + + Y L +G+ I +
Sbjct: 59 ---------EREIVRDIKEKLCYVALDFENEMATAASSSSLEKS----YELPDGQVITI- 104
Query: 976 GHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSDGREETQYFPFRCWVNTRTPEK 1032
G+ R E LF+ + ++ I +S++ ++ + N
Sbjct: 105 GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKD--------LYANNVMSGG 156
Query: 1033 LCCLVGWSNIC---CYKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNKRAIQKDVY 1088
G ++ L K E Y W+GG+I A+ ++ + I K Y
Sbjct: 157 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEY 216
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.5 bits (211), Expect = 3e-19
Identities = 53/249 (21%), Positives = 88/249 (35%), Gaps = 43/249 (17%)
Query: 163 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIK 222
TG+VLD G +P+YEG + A L L G+ + ++ K
Sbjct: 3 TGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLM-----------------K 45
Query: 223 ALENPDPYIVTVEDVENLSDSIIEDIKVCSCFV-TTMERSAEIAAKNPDHKYPSGFMYPL 281
L VT + E I+ DIK C+V E AA + + Y L
Sbjct: 46 ILTERGYSFVTTAERE-----IVRDIKEKLCYVALDFENEMATAASSSSLEKS----YEL 96
Query: 282 KNGKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLSVASSDGREETQYFPFRC 338
+G+ I + G+ R E LF+ + ++ I +S++ ++
Sbjct: 97 PDGQVITI-GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKD--------L 147
Query: 339 WVNTRTPEKLCCLVGWSNIC---CYKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYN 394
+ N G ++ L K E Y W+GG+I A+ ++
Sbjct: 148 YANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQ 207
Query: 395 KRAIQKDVY 403
+ I K Y
Sbjct: 208 QMWITKQEY 216
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.8 bits (178), Expect = 8e-15
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G+ R E LF+ + ++ I +S++K D++K L N +++GGT M PG+
Sbjct: 105 GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIA 164
Query: 493 YRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDA 552
R+ +E+ L S + P + Y W+GG+I A+ ++ + I K
Sbjct: 165 DRMQKEITALAPSTMKIKII---------APPERKYSVWIGGSILASLSTFQQMWITKQE 215
Query: 553 Y 553
Y
Sbjct: 216 Y 216
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Score = 74.8 bits (183), Expect = 3e-15
Identities = 50/258 (19%), Positives = 80/258 (31%), Gaps = 29/258 (11%)
Query: 857 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYI 916
TG V+D G ++PV EG + K + + G+ + I+ LL D + I
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPI-AGRDITYFIQQLLRDR-------EVGI 55
Query: 917 VTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSG 976
+ +E VC V + +K K +G K I V G
Sbjct: 56 PPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI--KQYTGINAISKKEFSIDV-G 112
Query: 977 HIRETAFEVLFELDLDMLNIATII---LDSLLSVASSDGREETQYFPFRCWVNT------ 1027
+ R E+ F + + I +D ++ D R +T
Sbjct: 113 YERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFG 172
Query: 1028 -RTPEKLCCLVG-----WSNICCYKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNK 1080
R L V + +L K Y W GG++ A+T + +
Sbjct: 173 RRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQ 232
Query: 1081 RAIQKDVYLNNNVIPDWC 1098
K Y P C
Sbjct: 233 VCHTKKDYEEIG--PSIC 248
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.9 bits (178), Expect = 1e-14
Identities = 48/267 (17%), Positives = 80/267 (29%), Gaps = 38/267 (14%)
Query: 163 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIK 222
TG V+D G ++PV EG + K + + G+ + I+ +
Sbjct: 4 TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQ-----------------Q 46
Query: 223 ALENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLK 282
L + + I + +E VC V + +K K +G K
Sbjct: 47 LLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWI--KQYTGINAISK 104
Query: 283 NGKKIPVSGHIRETAFEVLFELDLDMLNIATII---LDSLLSVASSDGREETQYFPFRCW 339
I V G+ R E+ F + + I +D ++ D R
Sbjct: 105 KEFSIDV-GYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSG 163
Query: 340 VNT-------RTPEKLCCLVG-----WSNICCYKLFIKNFKFHEFPAKE-NYVAWLGGAI 386
+T R L V + +L K Y W GG++
Sbjct: 164 GSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSM 223
Query: 387 FAATESYNKRAIQKDVYLNNNVIPDWC 413
A+T + + K Y P C
Sbjct: 224 LASTPEFYQVCHTKKDYEEIG--PSIC 248
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.1 bits (163), Expect = 1e-12
Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 17/182 (9%)
Query: 389 ATESYNKRAIQKDVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVS------GHIRETA 442
+ K ++ Y+ +++ ++ G+ K G+ R
Sbjct: 59 QSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLG 118
Query: 443 FEVLFELDLDMLNIA----TIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQE 498
E+ F + + ++ + + D+++PL +NI+L+GG+ M RL ++
Sbjct: 119 PEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRD 178
Query: 499 LRTLIESPPY------KDKLFIKNFKFHEFPAKE-NYVAWLGGAIFAATESYNKRAIQKD 551
L+ +++ +L K Y W GG++ A+T + + K
Sbjct: 179 LKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKK 238
Query: 552 AY 553
Y
Sbjct: 239 DY 240
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.2 bits (148), Expect = 2e-11
Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 8/150 (5%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVV-----LDIGSKYTKYGIFGSFQPKGFIKSQVKDPHT 77
V+D G+ YTK G G+ +P+ ++ + +K + + + D
Sbjct: 6 CVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI 65
Query: 78 NKLRNLYEYKDADDL---YGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 134
K ++ + + L+ F+ ++ FKY P+D ++ E L R A
Sbjct: 66 EKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 125
Query: 135 KVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 164
+++F+ + V L +++L +
Sbjct: 126 EIMFESFNVPGLYIAVQAVLALAASWTSRQ 155
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.9 bits (142), Expect = 1e-10
Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 30/150 (20%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL-----RNLYEYKDADDLY------ 787
V+D G+ YTK G G+ +P+ I S + + K+ R + + D D +
Sbjct: 6 CVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAI 65
Query: 788 -------------------GLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLA 828
L+ F+ ++ FKY P+D ++ E L R A
Sbjct: 66 EKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTA 125
Query: 829 KVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 858
+++F+ + V L +++L +
Sbjct: 126 EIMFESFNVPGLYIAVQAVLALAASWTSRQ 155
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.1 bits (145), Expect = 9e-11
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 436 GHIRETAFEVLFE---LDLDMLNIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLK 492
G R A E LF+ ++++ + +A ++ +++ D + ++I+L+GG+ M PGL
Sbjct: 102 GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLP 161
Query: 493 YRLLQELRTLIESPPYK-DKLFIKNFK 518
RL +EL+ L K D + FK
Sbjct: 162 SRLERELKQLYLERVLKGDVEKLSKFK 188
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.2 bits (127), Expect = 2e-08
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 20/152 (13%)
Query: 858 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIV 917
G+V+D G + PVYEG + + L + G+ + ++ LL+ A + +
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDI-AGRDITRYLIKLLLLRGYAFNHSADF-- 57
Query: 918 TVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGH 977
+ IK C+V + K Y L +G+ I V G
Sbjct: 58 ----------ETVRMIKEKLCYVGYNIEQEQ---KLALETTVLVESYTLPDGRIIKV-GG 103
Query: 978 IRETAFEVLFE---LDLDMLNIATIILDSLLS 1006
R A E LF+ ++++ + +A ++ +++ +
Sbjct: 104 ERFEAPEALFQPHLINVEGVGVAELLFNTIQA 135
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.1 bits (119), Expect = 2e-07
Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 29/161 (18%)
Query: 164 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKA 223
G+V+D G + PVYEG + + L + G+ + ++ + LL+ A
Sbjct: 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIK----------LLLLRGYA 50
Query: 224 LENPDPYIVTVEDVENLSDSIIEDIKVCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKN 283
+ + + IK C+V + K Y L +
Sbjct: 51 FNHSADF------------ETVRMIKEKLCYVGYNIEQEQ---KLALETTVLVESYTLPD 95
Query: 284 GKKIPVSGHIRETAFEVLFE---LDLDMLNIATIILDSLLS 321
G+ I V G R A E LF+ ++++ + +A ++ +++ +
Sbjct: 96 GRIIKV-GGERFEAPEALFQPHLINVEGVGVAELLFNTIQA 135
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.6 bits (141), Expect = 1e-10
Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 3/140 (2%)
Query: 23 VVLDIGSKYTKYGIFGSFQPKGVV-LDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTN-KL 80
+V D GS K G G P+ V +G + + G Q ++ + + L
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61
Query: 81 RNLYEYKDADDLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKH 140
+ E+ + + + + F+ +P++ ++ E+ L P R + +++F+
Sbjct: 62 KYPIEHGIITN-WDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 120
Query: 141 YEVLSLLYVPSHLVSLCTLG 160
+ V ++ ++SL G
Sbjct: 121 FNVPAMYVAIQAVLSLYASG 140
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.1 bits (132), Expect = 2e-09
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 23/139 (16%)
Query: 739 VVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEYKDADDLYGLL-- 790
+V D GS K G G P+ S V P + ++ Y +A G+L
Sbjct: 2 LVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 61
Query: 791 ---------------IEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHY 835
+ F+ +P++ ++ E+ L P R + +++F+ +
Sbjct: 62 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETF 121
Query: 836 EVLSLLYVPSHLVSLCTLG 854
V ++ ++SL G
Sbjct: 122 NVPAMYVAIQAVLSLYASG 140
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1107 | |||
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 100.0 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 100.0 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 100.0 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 100.0 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 99.97 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 99.92 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 99.92 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 99.91 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 99.9 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 99.89 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 98.69 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 98.2 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 97.6 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 97.06 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 96.97 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 96.46 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 95.39 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 94.71 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 94.44 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 93.86 | |
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 92.92 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 90.57 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 87.8 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 87.73 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 84.87 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 81.12 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 80.4 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 80.32 |
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-43 Score=379.93 Aligned_cols=217 Identities=27% Similarity=0.429 Sum_probs=186.7
Q ss_pred CceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCC
Q psy9135 161 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENL 240 (1107)
Q Consensus 161 ~~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~ 240 (1107)
|+||||||+|++.|+|+||+||+++.++++++++||++++++|+++ |++++.... ...
T Consensus 1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~--------------L~~~~~~~~--------~~~ 58 (225)
T d2fxua2 1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKI--------------LTERGYSFV--------TTA 58 (225)
T ss_dssp CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHH--------------HHHHTCCCC--------SHH
T ss_pred CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHH--------------HhhccCCcC--------CHH
Confidence 6899999999999999999999999999999999999999999999 766654321 223
Q ss_pred CHHHHHHHHHhceeeccchhHHH-HHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhh
Q psy9135 241 SDSIIEDIKVCSCFVTTMERSAE-IAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSL 319 (1107)
Q Consensus 241 ~~~~~e~iKe~~c~v~~~~~~~~-~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~ 319 (1107)
+...++++||.+|+++.+..... ...... .....|.||||+.+.+
T Consensus 59 ~~~~~~~~ke~~~~~~~d~~~e~~~~~~~~----~~~~~~~lpdg~~i~i------------------------------ 104 (225)
T d2fxua2 59 EREIVRDIKEKLCYVALDFENEMATAASSS----SLEKSYELPDGQVITI------------------------------ 104 (225)
T ss_dssp HHHHHHHHHHHHCCCCSSHHHHHHHHHHCS----TTCEEEECTTSCEEEE------------------------------
T ss_pred HHHHHHHHHHHHhhcccchhHHHhhcccCc----ccceeEECCCCCEEEE------------------------------
Confidence 57899999999999996544322 222211 4567899999988655
Q ss_pred hhcccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhccc
Q psy9135 320 LSVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQ 399 (1107)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 399 (1107)
T Consensus 105 -------------------------------------------------------------------------------- 104 (225)
T d2fxua2 105 -------------------------------------------------------------------------------- 104 (225)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhh
Q psy9135 400 KDVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLA 476 (1107)
Q Consensus 400 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~ 476 (1107)
+.||+.+||+||+| +.+..||+++|.+||.+||.|+|+.|+
T Consensus 105 ------------------------------------~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~ 148 (225)
T d2fxua2 105 ------------------------------------GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLY 148 (225)
T ss_dssp ------------------------------------STHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------------------------chHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhh
Confidence 56788888888887 357789999999999999999999999
Q ss_pred ccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHHhhcCCcccccccccHHHHHhc
Q psy9135 477 ENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDAYLNN 556 (1107)
Q Consensus 477 ~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~ITk~eYeE~ 556 (1107)
+||+|+||+|++|||.+||++||+.+.+.. .++++..++ +|++++|+||||+|++++|+++||||+||+|+
T Consensus 149 ~nIvl~GG~s~~~G~~~RL~~El~~~~~~~--------~~~~v~~~~-~~~~~aW~Ggsilasl~~f~~~~itk~eY~E~ 219 (225)
T d2fxua2 149 ANNVMSGGTTMYPGIADRMQKEITALAPST--------MKIKIIAPP-ERKYSVWIGGSILASLSTFQQMWITKQEYDEA 219 (225)
T ss_dssp TCEEEESGGGCSTTHHHHHHHHHHHHSCTT--------CCCCEECCT-TTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHH
T ss_pred cCEEEeCCcccCCchhHHHHhHHHHhhccc--------cceEEecCC-CCCeeEEeCHhhhhcCccHhhEEEEHHHHHhh
Confidence 999999999999999999999999998863 367888776 89999999999999999999999999999999
Q ss_pred CC
Q psy9135 557 NM 558 (1107)
Q Consensus 557 G~ 558 (1107)
|+
T Consensus 220 G~ 221 (225)
T d2fxua2 220 GP 221 (225)
T ss_dssp CG
T ss_pred Cc
Confidence 98
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.7e-40 Score=358.13 Aligned_cols=230 Identities=20% Similarity=0.236 Sum_probs=177.8
Q ss_pred ceEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCC
Q psy9135 162 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLS 241 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 241 (1107)
-||||||+|++.|+|+||+||++++++++++++||+++|++|+++ |++++...+ ...+
T Consensus 3 ~TGlVVDiG~~~T~v~PV~eG~~l~~~~~~~~~GG~~lt~~L~~~--------------L~~~~~~~~--------~~~~ 60 (258)
T d1k8ka2 3 LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQL--------------LRDREVGIP--------PEQS 60 (258)
T ss_dssp CCEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHH--------------HHTTCCCCC--------GGGH
T ss_pred CEEEEEEcCCCcEEEEEEECCEEchhheEEEeCcHHHHHHHHHHH--------------HHHcCCCCC--------cHHH
Confidence 589999999999999999999999999999999999999999999 777664432 1235
Q ss_pred HHHHHHHHHhceeeccchhH-HHHHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhh
Q psy9135 242 DSIIEDIKVCSCFVTTMERS-AEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLL 320 (1107)
Q Consensus 242 ~~~~e~iKe~~c~v~~~~~~-~~~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~ 320 (1107)
.+.++.+|+++||++.+... .+....... .....|.++|+..
T Consensus 61 ~~~~~~~ke~~~~v~~d~~~e~~~~~~~~~---~~~~~~~~~~~~~---------------------------------- 103 (258)
T d1k8ka2 61 LETAKAVKERYSYVCPDLVKEFNKYDTDGS---KWIKQYTGINAIS---------------------------------- 103 (258)
T ss_dssp HHHHHHHHHHHCCCCSCHHHHHHHHHHSGG---GTCEEEEEECTTT----------------------------------
T ss_pred HHHHHhHHhhhcccccchHHHHHhhccccc---ccccccccccccC----------------------------------
Confidence 78899999999999854332 221111100 1122333322221
Q ss_pred hcccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhcccc
Q psy9135 321 SVASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQK 400 (1107)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 400 (1107)
T Consensus 104 -------------------------------------------------------------------------------- 103 (258)
T d1k8ka2 104 -------------------------------------------------------------------------------- 103 (258)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCCC---C-CCCCHHHHHHHHHhccCccchhhhh
Q psy9135 401 DVYLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFELD---L-DMLNIATIILDSLLKTGRDMKKPLA 476 (1107)
Q Consensus 401 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p~---~-~~~gL~e~I~~sI~~~~~d~r~~L~ 476 (1107)
++++.+.++.|||++||+||+|. . ...+|+++|.++|++||+|+|+.|+
T Consensus 104 ---------------------------~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~ 156 (258)
T d1k8ka2 104 ---------------------------KKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLY 156 (258)
T ss_dssp ---------------------------CCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHH
T ss_pred ---------------------------CCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHH
Confidence 11222334889999999999994 2 3478999999999999999999999
Q ss_pred ccEEEEcCCCCccChHHHHHHHHHhhcCCCCc--------cccccceeEEEEcCCCCCccccchhHHhhcCCcccccccc
Q psy9135 477 ENILLTGGTAMTPGLKYRLLQELRTLIESPPY--------KDKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAI 548 (1107)
Q Consensus 477 ~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~--------~~~~~~~~v~v~~~~~~~~~~aW~Ggsilasl~~f~~~~I 548 (1107)
+||+|+||+|++|||.+||++||+.+++.... .-.....+++|++++ +|++++|+||||+|++++|+++||
T Consensus 157 ~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~-~r~~s~W~Ggsila~l~~f~~~~I 235 (258)
T d1k8ka2 157 KNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHH-MQRYAVWFGGSMLASTPEFYQVCH 235 (258)
T ss_dssp HCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCT-TCTTHHHHHHHHHTTSHHHHHHSE
T ss_pred hCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCC-CCCceehHHHHHHHcCccHHhhee
Confidence 99999999999999999999999876542100 000012357787766 899999999999999999999999
Q ss_pred cHHHHHhcCC
Q psy9135 549 QKDAYLNNNM 558 (1107)
Q Consensus 549 Tk~eYeE~G~ 558 (1107)
||+||+|+|+
T Consensus 236 tk~eY~E~G~ 245 (258)
T d1k8ka2 236 TKKDYEEIGP 245 (258)
T ss_dssp EHHHHHHHCG
T ss_pred cHHHHhhhCh
Confidence 9999999998
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.4e-39 Score=344.91 Aligned_cols=208 Identities=24% Similarity=0.372 Sum_probs=177.9
Q ss_pred CceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHH
Q psy9135 855 VNTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIK 934 (1107)
Q Consensus 855 ~~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iK 934 (1107)
||||||||+|++.|+|+||+||++++++++++++| |++|+++|+++|.+++. ..... .+.+.++++|
T Consensus 1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~G-G~~lt~~l~~~L~~~~~--------~~~~~----~~~~~~~~~k 67 (225)
T d2fxua2 1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLA-GRDLTDYLMKILTERGY--------SFVTT----AEREIVRDIK 67 (225)
T ss_dssp CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCC-HHHHHHHHHHHHHHHTC--------CCCSH----HHHHHHHHHH
T ss_pred CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECc-HHHHHHHHHHHHhhccC--------CcCCH----HHHHHHHHHH
Confidence 68999999999999999999999999999999999 99999999999998872 22111 1245899999
Q ss_pred HhceeeccchHHHHHHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCccc
Q psy9135 935 VCSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSD 1011 (1107)
Q Consensus 935 e~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d 1011 (1107)
|++|+++.+...+....... ....+.|.+|||+.+.+ +.||+.+||+||+|+ .+..||+++|.+||.+|| +|
T Consensus 68 e~~~~~~~d~~~e~~~~~~~---~~~~~~~~lpdg~~i~i-~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~-~d 142 (225)
T d2fxua2 68 EKLCYVALDFENEMATAASS---SSLEKSYELPDGQVITI-GNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCD-ID 142 (225)
T ss_dssp HHHCCCCSSHHHHHHHHHHC---STTCEEEECTTSCEEEE-STHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSC-HH
T ss_pred HHHhhcccchhHHHhhcccC---cccceeEECCCCCEEEE-chHhccccHhhcCccccCCccCChhHHHHHHhhcCC-cc
Confidence 99999998765433322211 14568899999999999 899999999999996 478899999999999999 99
Q ss_pred ccccC-------------CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhcCCCc
Q psy9135 1012 GREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESY 1078 (1107)
Q Consensus 1012 ~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlasl~~f 1078 (1107)
+|+.| ||| .+||++||.++.+ .. ..+++. .+++|++++|+||||+|++++|
T Consensus 143 ~r~~l~~nIvl~GG~s~~~G~------~~RL~~El~~~~~-~~--------~~~~v~-~~~~~~~~aW~Ggsilasl~~f 206 (225)
T d2fxua2 143 IRKDLYANNVMSGGTTMYPGI------ADRMQKEITALAP-ST--------MKIKII-APPERKYSVWIGGSILASLSTF 206 (225)
T ss_dssp HHHHHHTCEEEESGGGCSTTH------HHHHHHHHHHHSC-TT--------CCCCEE-CCTTTTSHHHHHHHHHHHCGGG
T ss_pred hhhhhhcCEEEeCCcccCCch------hHHHHhHHHHhhc-cc--------cceEEe-cCCCCCeeEEeCHhhhhcCccH
Confidence 99998 888 9999999999988 21 235664 5569999999999999999999
Q ss_pred cceeeeHHHHhhcCC-ccc
Q psy9135 1079 NKRAIQKDVYLNNNV-IPD 1096 (1107)
Q Consensus 1079 ~~~~ITk~eYeE~G~-i~d 1096 (1107)
+++||||+||+|+|+ |+|
T Consensus 207 ~~~~itk~eY~E~G~~ivh 225 (225)
T d2fxua2 207 QQMWITKQEYDEAGPSIVH 225 (225)
T ss_dssp GGGSEEHHHHHHHCGGGGC
T ss_pred hhEEEEHHHHHhhCccccC
Confidence 999999999999996 654
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-36 Score=330.69 Aligned_cols=223 Identities=20% Similarity=0.172 Sum_probs=174.7
Q ss_pred ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHH
Q psy9135 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKV 935 (1107)
Q Consensus 856 ~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe 935 (1107)
-||||||+|++.|+|+||+||++++++++++++| |+++|++|+++|++++ +..+... +.+.++.+|+
T Consensus 3 ~TGlVVDiG~~~T~v~PV~eG~~l~~~~~~~~~G-G~~lt~~L~~~L~~~~--------~~~~~~~----~~~~~~~~ke 69 (258)
T d1k8ka2 3 LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIA-GRDITYFIQQLLRDRE--------VGIPPEQ----SLETAKAVKE 69 (258)
T ss_dssp CCEEEEEESSSCEEEEEEETTEECGGGCEEESCS-HHHHHHHHHHHHHTTC--------CCCCGGG----HHHHHHHHHH
T ss_pred CEEEEEEcCCCcEEEEEEECCEEchhheEEEeCc-HHHHHHHHHHHHHHcC--------CCCCcHH----HHHHHHhHHh
Confidence 5899999999999999999999999999999999 9999999999999887 2232222 2458999999
Q ss_pred hceeeccchHHHHHHhcCCCCCCCCceEEeCC-----CCCEEEecccccccccccccCCCC----CCCcHHHHHHHHHHc
Q psy9135 936 CSCFVTTMERSAEIAAKNPDHKYPSGFMYPLK-----NGKKIPVSGHIRETAFEVLFELDL----DMLNIATIILDSLLS 1006 (1107)
Q Consensus 936 ~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lp-----dg~~i~l~~~erf~~~E~LF~P~~----~~~gL~~~I~~sI~~ 1006 (1107)
++|||+.+...+........ ....+.|.++ +++.+.+ +.|||.+||+||+|+. ...+|+++|.++|.+
T Consensus 70 ~~~~v~~d~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~-~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~ 146 (258)
T d1k8ka2 70 RYSYVCPDLVKEFNKYDTDG--SKWIKQYTGINAISKKEFSIDV-GYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQN 146 (258)
T ss_dssp HHCCCCSCHHHHHHHHHHSG--GGTCEEEEEECTTTCCEEEEEE-CTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHH
T ss_pred hhcccccchHHHHHhhcccc--cccccccccccccCCCCeEEec-CccceeccHHHhhhhhhcccccccchHHHHHHHHh
Confidence 99999977643322111000 0233455554 5678888 8999999999999963 357999999999999
Q ss_pred CCcccccccC-------------CCCCCCCCccchHHHHHhhhhCCCccc-----ccccce--eeEEEEeCCCCcceehh
Q psy9135 1007 VASSDGREET-------------QYFPFRCWVNTRTPEKLCCLVGWSNIC-----CYKLFI--KNFKFHEFPAKENYVAW 1066 (1107)
Q Consensus 1007 ~~~~d~r~~L-------------~Gf~~~~~~~eRL~~EL~~l~p~~~~~-----~~~~~~--~~~~v~~~~~~~~~~aW 1066 (1107)
|| +|+|+.| ||| .+||++||+++++....+ ...+.. -.++|. ++++|+|++|
T Consensus 147 ~~-~d~r~~L~~nIvl~GG~s~~~Gf------~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~-~~~~r~~s~W 218 (258)
T d1k8ka2 147 CP-IDVRRPLYKNIVLSGGSTMFRDF------GRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVI-THHMQRYAVW 218 (258)
T ss_dssp SC-GGGTTHHHHCEEEESGGGCSTTH------HHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEE-CCTTCTTHHH
T ss_pred cc-HHhhHHHHhCEEEecCcccCCCH------HHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEe-cCCCCCceeh
Confidence 99 9999988 888 999999999887611000 001111 124554 5668999999
Q ss_pred hhHHHhhcCCCccceeeeHHHHhhcCC-cc-ceecccc
Q psy9135 1067 LGGAIFAATESYNKRAIQKDVYLNNNV-IP-DWCNLSV 1102 (1107)
Q Consensus 1067 ~GgSIlasl~~f~~~~ITk~eYeE~G~-i~-d~~~~~~ 1102 (1107)
+||||+|++++|+++||||+||+|+|+ |+ ++||+.+
T Consensus 219 ~Ggsila~l~~f~~~~Itk~eY~E~G~~iv~~rk~f~~ 256 (258)
T d1k8ka2 219 FGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGV 256 (258)
T ss_dssp HHHHHHTTSHHHHHHSEEHHHHHHHCGGGGGCCCCCSC
T ss_pred HHHHHHHcCccHHhheecHHHHhhhChHHHhcCCCcCC
Confidence 999999999999999999999999997 77 5778765
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=5e-31 Score=274.18 Aligned_cols=171 Identities=25% Similarity=0.373 Sum_probs=145.9
Q ss_pred EEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCHH
Q psy9135 164 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDS 243 (1107)
Q Consensus 164 glVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ 243 (1107)
|||||+|++.|+|+||+||++++++++++++||++++++|+++ |++.+.... ...+..
T Consensus 1 GlVVDiG~~~T~v~PV~dG~~l~~a~~~~~igG~~lt~~l~~~--------------l~~~~~~~~--------~~~~~~ 58 (190)
T d1k8kb1 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKL--------------LLLRGYAFN--------HSADFE 58 (190)
T ss_dssp CCEEEECSSCEEEECEETTEECSTTCEEESCCHHHHHHHHHHH--------------HHHTTCCCC--------TTTTHH
T ss_pred CEEEEcCCCcEEEEEeECCEEcccceEEEeccHHHHHHHHHHH--------------HHhcCCccc--------chHHHH
Confidence 7999999999999999999999999999999999999999999 777664331 234688
Q ss_pred HHHHHHHhceeeccchhHHH-HHhcCCCCCCCCCeeeecCCCcccccCccchhhhhhhhcchhhhhhhHHHHHHhhhhhc
Q psy9135 244 IIEDIKVCSCFVTTMERSAE-IAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSV 322 (1107)
Q Consensus 244 ~~e~iKe~~c~v~~~~~~~~-~~~~~~~~~~~~~~~y~Lpd~~~i~i~~~~r~~~~e~lF~~~~~~~~~~~~~~~~~~~~ 322 (1107)
.++++|+++||++....+.. ...... .....|++|||+.+.+
T Consensus 59 ~~~~i~~~~~~v~~~~~~e~~~~~~~~----~~~~~~~lpdg~~i~i--------------------------------- 101 (190)
T d1k8kb1 59 TVRMIKEKLCYVGYNIEQEQKLALETT----VLVESYTLPDGRIIKV--------------------------------- 101 (190)
T ss_dssp HHHHHHHHHCCCCSSHHHHHHHHHHCS----TTCEEEECTTSCEEEE---------------------------------
T ss_pred HHHHHHhhhhhhcccHHHHHHhhhccc----ceeeeeecCCCcEEEE---------------------------------
Confidence 99999999999996444322 222211 4567888888887554
Q ss_pred ccCCCccccccccccccccCCCcchhhhccCCcccccccchhccccccCCccchhhhhhcccccccccccchhhcccccc
Q psy9135 323 ASSDGREETQYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAATESYNKRAIQKDV 402 (1107)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 402 (1107)
T Consensus 102 -------------------------------------------------------------------------------- 101 (190)
T d1k8kb1 102 -------------------------------------------------------------------------------- 101 (190)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCcccccccCCCCCCCCCCCcccccCCcccccccccccCC---CCCCCCHHHHHHHHHhccCccchhhhhccE
Q psy9135 403 YLNNNVIPDWCNLSVLGTDLKKSVNPYLHFPVSGHIRETAFEVLFEL---DLDMLNIATIILDSLLKTGRDMKKPLAENI 479 (1107)
Q Consensus 403 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~pE~lF~p---~~~~~gL~e~I~~sI~~~~~d~r~~L~~nI 479 (1107)
+.|||.+||+||+| +.+..||+++|.+||.+||.|+|+.|++||
T Consensus 102 ---------------------------------~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~NI 148 (190)
T d1k8kb1 102 ---------------------------------GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHI 148 (190)
T ss_dssp ---------------------------------CTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTC
T ss_pred ---------------------------------ChhhccccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHcCE
Confidence 57899999999998 678899999999999999999999999999
Q ss_pred EEEcCCCCccChHHHHHHHHHhhcCCC
Q psy9135 480 LLTGGTAMTPGLKYRLLQELRTLIESP 506 (1107)
Q Consensus 480 vLtGG~S~ipGf~eRL~~EL~~~~~~~ 506 (1107)
+|+||+|++|||.+||++||+++.|..
T Consensus 149 vl~GG~Sl~pGf~~RL~~EL~~l~p~~ 175 (190)
T d1k8kb1 149 VLSGGSTMYPGLPSRLERELKQLYLER 175 (190)
T ss_dssp EEESGGGCSTTHHHHHHHHHHHHHHHH
T ss_pred EEECcccCCCCHHHHHHHHHHHhhhHh
Confidence 999999999999999999999998853
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=4.7e-26 Score=236.34 Aligned_cols=157 Identities=23% Similarity=0.282 Sum_probs=135.8
Q ss_pred EEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhc
Q psy9135 858 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 937 (1107)
Q Consensus 858 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~ 937 (1107)
|||||+|++.|+|+||+||++++++++++++| |++++++|+++|++++. .... ......++++|+++
T Consensus 1 GlVVDiG~~~T~v~PV~dG~~l~~a~~~~~ig-G~~lt~~l~~~l~~~~~--------~~~~----~~~~~~~~~i~~~~ 67 (190)
T d1k8kb1 1 GVVVDSGDGVTHICPVYEGFSLPHLTRRLDIA-GRDITRYLIKLLLLRGY--------AFNH----SADFETVRMIKEKL 67 (190)
T ss_dssp CCEEEECSSCEEEECEETTEECSTTCEEESCC-HHHHHHHHHHHHHHTTC--------CCCT----TTTHHHHHHHHHHH
T ss_pred CEEEEcCCCcEEEEEeECCEEcccceEEEecc-HHHHHHHHHHHHHhcCC--------cccc----hHHHHHHHHHHhhh
Confidence 79999999999999999999999999999999 99999999999998872 2211 12345899999999
Q ss_pred eeeccchHHHHHHhcCCCCCCCCceEEeCCCCCEEEecccccccccccccCCC---CCCCcHHHHHHHHHHcCCcccccc
Q psy9135 938 CFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKKIPVSGHIRETAFEVLFELD---LDMLNIATIILDSLLSVASSDGRE 1014 (1107)
Q Consensus 938 c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~~i~l~~~erf~~~E~LF~P~---~~~~gL~~~I~~sI~~~~~~d~r~ 1014 (1107)
||++.+...+........ .....|++|||+.+.+ +.|||.+||+||+|+ .+..+|+++|.+||.+|| +|+|+
T Consensus 68 ~~v~~~~~~e~~~~~~~~---~~~~~~~lpdg~~i~i-~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~-~d~r~ 142 (190)
T d1k8kb1 68 CYVGYNIEQEQKLALETT---VLVESYTLPDGRIIKV-GGERFEAPEALFQPHLINVEGVGVAELLFNTIQAAD-IDTRS 142 (190)
T ss_dssp CCCCSSHHHHHHHHHHCS---TTCEEEECTTSCEEEE-CTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSC-TTTHH
T ss_pred hhhcccHHHHHHhhhccc---ceeeeeecCCCcEEEE-ChhhccccccccChhhcCcccccHHHHHHHHHHhCC-HhHHH
Confidence 999987754433222111 4568899999999999 899999999999994 678999999999999999 99999
Q ss_pred cC-------------CCCCCCCCccchHHHHHhhhhC
Q psy9135 1015 ET-------------QYFPFRCWVNTRTPEKLCCLVG 1038 (1107)
Q Consensus 1015 ~L-------------~Gf~~~~~~~eRL~~EL~~l~p 1038 (1107)
.| ||| .+||++||++++|
T Consensus 143 ~L~~NIvl~GG~Sl~pGf------~~RL~~EL~~l~p 173 (190)
T d1k8kb1 143 EFYKHIVLSGGSTMYPGL------PSRLERELKQLYL 173 (190)
T ss_dssp HHHTTCEEESGGGCSTTH------HHHHHHHHHHHHH
T ss_pred HHHcCEEEECcccCCCCH------HHHHHHHHHHhhh
Confidence 99 889 9999999999998
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=4e-26 Score=229.22 Aligned_cols=123 Identities=22% Similarity=0.382 Sum_probs=109.5
Q ss_pred cceEEEecCcceEEEeccCCCCccEEEecceeccCCCCc--------------cceeecC----------------CHHh
Q psy9135 736 KTGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL--------------RNLYEYK----------------DADD 785 (1107)
Q Consensus 736 ~~~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~--------------~~~~~~~----------------~~~~ 785 (1107)
-++||||+||++||+|||||+.|+.++||++|.++.... ++.++++ +.+.
T Consensus 3 ~PavViD~GS~~~KaG~age~~P~~i~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~ig~e~~~~~~~~~~~pi~~G~i~ 82 (158)
T d1k8ka1 3 LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVE 82 (158)
T ss_dssp SCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTTSEEECCEETTEES
T ss_pred CCcEEEECCCCeEEEEECCCCCCCEEeccceeecccccccCchhcccccCCCccceecChhhhhCCCccccccccCCeEe
Confidence 478999999999999999999999999999997754321 2334333 5667
Q ss_pred hHHHHHHHHHHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCCceE
Q psy9135 786 LYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 858 (1107)
Q Consensus 786 ~~d~le~i~~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~~tg 858 (1107)
|||.++.+|+|+|++.|+++|+++||++|||+++++..|++++|+|||+|+||+++++++++||+||+|++|+
T Consensus 83 dwd~~e~l~~~~~~~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~~ 155 (158)
T d1k8ka1 83 DWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ 155 (158)
T ss_dssp CHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTT
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999876
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.3e-25 Score=225.42 Aligned_cols=124 Identities=22% Similarity=0.380 Sum_probs=108.9
Q ss_pred CCCeEEEecCCceeEEeeecCcccccccccceeccCCccc--------------cceeccC----------------chh
Q psy9135 41 QPKGVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL--------------RNLYEYK----------------DAD 90 (1107)
Q Consensus 41 ~~~~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~--------------~~~~~~~----------------~~~ 90 (1107)
+-|+||||+||+++|+|||||+.|+.++||++|.++.... .+.++++ +.+
T Consensus 2 ~~PavViD~GS~~~KaG~age~~P~~i~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~ig~e~~~~~~~~~~~pi~~G~i 81 (158)
T d1k8ka1 2 RLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIV 81 (158)
T ss_dssp CSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTTSEEECCEETTEE
T ss_pred CCCcEEEECCCCeEEEEECCCCCCCEEeccceeecccccccCchhcccccCCCccceecChhhhhCCCccccccccCCeE
Confidence 3578999999999999999999999999999997754321 2334433 345
Q ss_pred hHHHHHHHHHHHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCCceE
Q psy9135 91 DLYGLLIEFIRKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGVNTG 164 (1107)
Q Consensus 91 ~~~~~le~i~~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~~tg 164 (1107)
.+|+.++.+|+|++++.|.+++++||||+|||+++++..|++++|+|||+|+||+++++++++||+||+|++++
T Consensus 82 ~dwd~~e~l~~~~~~~~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~~~ 155 (158)
T d1k8ka1 82 EDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQ 155 (158)
T ss_dssp SCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTT
T ss_pred ecHHHHHHHHHHHHHHhcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCCCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999875
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=2.6e-24 Score=211.88 Aligned_cols=117 Identities=20% Similarity=0.367 Sum_probs=105.7
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCCCc------cceee-----------------cCCHHhhHHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYE-----------------YKDADDLYGLLIEFI 794 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~------~~~~~-----------------~~~~~~~~d~le~i~ 794 (1107)
+||||+||++||+|||||+.|+.++||++|+++.+.. .+.+. .++.+.|||.++++|
T Consensus 1 avViD~Gs~~~k~G~age~~P~~~~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~~~~~~~~~p~~~g~v~dwd~~e~~~ 80 (140)
T d2fxua1 1 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIW 80 (140)
T ss_dssp CEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHHHHHH
T ss_pred CEEEECCCCeEEEeeCCCCCcceEeccceeeecccccccCccccceeeChhHhhccccccccCcCcCCcccCHHHHHHHH
Confidence 4899999999999999999999999999998866432 11121 236677899999999
Q ss_pred HHHHHhccccCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccC
Q psy9135 795 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 854 (1107)
Q Consensus 795 ~~~~~~~L~~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g 854 (1107)
+|+|++.|+++|+++|+|+|||+++++..|++++|+|||+|+||+++++++++||+||+|
T Consensus 81 ~~~~~~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 81 HHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHhhhhhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999987
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=1e-23 Score=207.62 Aligned_cols=117 Identities=20% Similarity=0.364 Sum_probs=104.1
Q ss_pred eEEEecCCceeEEeeecCcccccccccceeccCCccc------cceecc-----------------CchhhHHHHHHHHH
Q psy9135 44 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL------RNLYEY-----------------KDADDLYGLLIEFI 100 (1107)
Q Consensus 44 ~iViD~GS~~~K~G~age~~P~~i~ps~v~~~~~~~~------~~~~~~-----------------~~~~~~~~~le~i~ 100 (1107)
+||||+||++||+|||||+.|+.++||++|+++.... .+.+.+ ++.+.+|+.++++|
T Consensus 1 avViD~Gs~~~k~G~age~~P~~~~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~~~~~~~~~p~~~g~v~dwd~~e~~~ 80 (140)
T d2fxua1 1 ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIW 80 (140)
T ss_dssp CEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHHHHHHH
T ss_pred CEEEECCCCeEEEeeCCCCCcceEeccceeeecccccccCccccceeeChhHhhccccccccCcCcCCcccCHHHHHHHH
Confidence 5899999999999999999999999999998865432 111221 24456799999999
Q ss_pred HHHHhhccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCC
Q psy9135 101 RKIFFKYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLG 160 (1107)
Q Consensus 101 ~~~~~~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g 160 (1107)
+|+|.+.|.++++++|+|+|||+++++..|++++|+|||+|+||++++++++++|+|++|
T Consensus 81 ~~~~~~~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 81 HHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHhhhhhcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999987
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=98.69 E-value=1.3e-07 Score=96.16 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=51.8
Q ss_pred eEEEEEeCCCceEEEEeecCEecccceEEecccHHHHHHHHHHhhhhhhhhhhhhHHHHhhcCCCCCCccccccccCCCH
Q psy9135 163 TGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGQSVEAHIRRGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSD 242 (1107)
Q Consensus 163 tglVVDiG~~~T~V~PV~dG~vl~~~~~~~~iGG~~lt~~L~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 242 (1107)
..+|||+|+++|+++.+.+|.+... +.+++||+++|+.+.+. + .++.
T Consensus 8 Gv~vvDiG~~tt~i~i~~~G~l~~~--~~i~~GG~~iT~~Ia~~--------------l-----------------~i~~ 54 (191)
T d1e4ft2 8 GVVVVNLGYNFTGLIAYKNGVPIKI--SYVPVGMKHVIKDVSAV--------------L-----------------DTSF 54 (191)
T ss_dssp CEEEEEECSSCEEEEEEETTEEEEE--EEESCCHHHHHHHHHHH--------------H-----------------TCCH
T ss_pred CEEEEEeCCCcEEEEEEECCeEEEE--EEEeeChHHHHHHHHHH--------------h-----------------cccH
Confidence 3689999999999999999999866 77899999999999887 2 1467
Q ss_pred HHHHHHHHhceeec
Q psy9135 243 SIIEDIKVCSCFVT 256 (1107)
Q Consensus 243 ~~~e~iKe~~c~v~ 256 (1107)
..+|++|.++..+.
T Consensus 55 ~~AE~iK~~~g~~~ 68 (191)
T d1e4ft2 55 EESERLIITHGNAV 68 (191)
T ss_dssp HHHHHHHHHHCCSC
T ss_pred HHHHHHHhhccccc
Confidence 88999999876554
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=6.2e-06 Score=83.00 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=52.1
Q ss_pred CHHHHHHHHHhccCccchhhh-hccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchh
Q psy9135 455 NIATIILDSLLKTGRDMKKPL-AENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLG 533 (1107)
Q Consensus 455 gL~e~I~~sI~~~~~d~r~~L-~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~G 533 (1107)
-+.+.|.+++..+.....++. -+.|+||||+|.+||+.+++++.+. .++.+ .. +|..+..+|
T Consensus 116 ~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGsS~ip~v~~~l~~~fg--------------~~v~~--~~-~P~~aVA~G 178 (196)
T d1jcea2 116 AIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETG--------------ISVIR--SE-EPLTAVAKG 178 (196)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHS--------------SCEEE--CS-STTTHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccccceEEeCchhcchhHHHHHHHHHC--------------cCCcc--CC-ChHHHHHHH
Confidence 367778888888877665544 4569999999999999999998762 13333 23 789999999
Q ss_pred HHhhcC
Q psy9135 534 GAIFAA 539 (1107)
Q Consensus 534 gsilas 539 (1107)
|.++++
T Consensus 179 Aai~~~ 184 (196)
T d1jcea2 179 AGMVLD 184 (196)
T ss_dssp HHHGGG
T ss_pred HHHHHH
Confidence 998764
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=97.60 E-value=0.00021 Score=72.00 Aligned_cols=67 Identities=12% Similarity=0.188 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhH
Q psy9135 455 NIATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGG 534 (1107)
Q Consensus 455 gL~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Gg 534 (1107)
.+.++|.+++.+...+.. =...|+|+||+|.+|.+.++|++.+... +.... +|..+.=.||
T Consensus 130 ~~~~~i~~~l~~a~~~~~--~Id~v~lvGG~sr~p~l~~~i~~~f~~~----------------~~~~~-~p~~aVa~GA 190 (198)
T d1dkgd2 130 RSIELLKVALQDAGLSVS--DIDDVILVGGQTRMPMVQKKVAEFFGKE----------------PRKDV-NPDEAVAIGA 190 (198)
T ss_dssp HHHHHHHHHHHTTTCCTT--TCCEEEEESGGGGSHHHHHHHHHHHSSC----------------CBCSS-CTTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCChh--HCcEEEEEcCccCCHHHHHHHHHHHCCC----------------CCCCC-ChHHHHHHHH
Confidence 477788888877665433 2567999999999999999999887321 11122 5777888999
Q ss_pred HhhcCC
Q psy9135 535 AIFAAT 540 (1107)
Q Consensus 535 silasl 540 (1107)
++.|..
T Consensus 191 a~~aa~ 196 (198)
T d1dkgd2 191 AVQGGV 196 (198)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 999864
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.06 E-value=0.0013 Score=65.54 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=43.1
Q ss_pred HHHHHHHHHhccCccchhhhhccEEEEcCCCCccChHHHHHHHHHhhcCCCCccccccceeEEEEcCCCCCccccchhHH
Q psy9135 456 IATIILDSLLKTGRDMKKPLAENILLTGGTAMTPGLKYRLLQELRTLIESPPYKDKLFIKNFKFHEFPAKENYVAWLGGA 535 (1107)
Q Consensus 456 L~e~I~~sI~~~~~d~r~~L~~nIvLtGG~S~ipGf~eRL~~EL~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~aW~Ggs 535 (1107)
+.+.|.+++...... +.=...|+|+||+|.+|.+.+++++.+... + +.... +|..+.=.||+
T Consensus 125 ~~~~i~~~l~~~~~~--~~~i~~V~lvGG~sr~p~v~~~i~~~f~~~-------------~--i~~~~-~p~~aVa~GaA 186 (193)
T d1bupa2 125 TLDPVEKALRDAKLD--KSQIHDIVLVGGSTRIPKIQKLLQDFFNGK-------------E--LNKSI-NPDEAVAYGAA 186 (193)
T ss_dssp THHHHHHHHHHHTCC--GGGCCEEEEESGGGGCHHHHHHHHHHTTTC-------------C--CBCSS-CGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--HHHCCEEEEECCccccHHHHHHHHHHcCCC-------------C--CCCCC-ChHHHHHHHHH
Confidence 344555555543322 122467999999999999998888665311 1 12222 68888889999
Q ss_pred hhcCC
Q psy9135 536 IFAAT 540 (1107)
Q Consensus 536 ilasl 540 (1107)
++|..
T Consensus 187 ~~aa~ 191 (193)
T d1bupa2 187 VQAAI 191 (193)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98753
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.00035 Score=69.94 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=51.2
Q ss_pred EEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHHhc
Q psy9135 858 GLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKVCS 937 (1107)
Q Consensus 858 glVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe~~ 937 (1107)
.+|||+|+++|.++.+.+|.+.. .+.+++| |+++|+.+.+.+. ++.+.+|.+|.++
T Consensus 9 v~vvDiG~~tt~i~i~~~G~l~~--~~~i~~G-G~~iT~~Ia~~l~---------------------i~~~~AE~iK~~~ 64 (191)
T d1e4ft2 9 VVVVNLGYNFTGLIAYKNGVPIK--ISYVPVG-MKHVIKDVSAVLD---------------------TSFEESERLIITH 64 (191)
T ss_dssp EEEEEECSSCEEEEEEETTEEEE--EEEESCC-HHHHHHHHHHHHT---------------------CCHHHHHHHHHHH
T ss_pred EEEEEeCCCcEEEEEEECCeEEE--EEEEeeC-hHHHHHHHHHHhc---------------------ccHHHHHHHHhhc
Confidence 58999999999999999998874 4678999 9999999887762 3445799999998
Q ss_pred eeeccc
Q psy9135 938 CFVTTM 943 (1107)
Q Consensus 938 c~v~~~ 943 (1107)
..+..+
T Consensus 65 g~~~~~ 70 (191)
T d1e4ft2 65 GNAVYN 70 (191)
T ss_dssp CCSCCT
T ss_pred cccccc
Confidence 766643
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0036 Score=60.12 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=36.3
Q ss_pred ceEEEEEeCCCceEEEEeecCEeccc-ceEEecccHHHHHHHHHHh
Q psy9135 162 NTGLVLDIGYSEATLLPVYEGVPVLC-AWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V~PV~dG~vl~~-~~~~~~iGG~~lt~~L~~l 206 (1107)
.+.||+|+|+.+|.++.+-+|..... +....+.||.++++.+.+.
T Consensus 7 ~~ilViDiGggTtDi~v~~~~~~~~~~~~~~~~~G~~~i~~~i~~~ 52 (163)
T d2zgya2 7 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDA 52 (163)
T ss_dssp CEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHH
T ss_pred CCEEEEECCCCcEEEEEEcCCeEEEEEeeccccccchHHHHHHHHh
Confidence 57899999999999997766655443 3445789999999999888
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=95.39 E-value=0.024 Score=52.63 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhhccc-cCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccC
Q psy9135 93 YGLLIEFIRKIFFKYFV-TSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL 159 (1107)
Q Consensus 93 ~~~le~i~~~~~~~~L~-~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~ 159 (1107)
.+..+.++.+....... ....-..+++|.|......+|+.+.+ ..+.-|+.-+.++++|.+|+.|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~-Aa~~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 70 YTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILD-AGLEAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHH-HHHHTTCSEEEEEEHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHH-HHHHcCCCEEEEeCCHHHHHhCC
Confidence 34455555555433221 22345779999999999999998776 56888999999999999999875
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=94.71 E-value=0.029 Score=54.86 Aligned_cols=168 Identities=11% Similarity=0.094 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCceEEEEEEcCEeeccceEEEeccchHHHHHHHHHHHHhhcccCCCCCCCccchhhhhcccHHHHHHHHH
Q psy9135 856 NTGLVLDIGYSEATLLPVYEGVPVLCAWKDLSLGGGQSVESHIRSLLIDEIKALENPDPYIVTVEDVENLSDSIIEDIKV 935 (1107)
Q Consensus 856 ~tglVVDiG~~~T~v~PV~dG~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~iKe 935 (1107)
...+|+|+|.++|.|+-+..|..... ..++.| |.+++..+...+..... ...........+.
T Consensus 7 ~gvlV~DiGGGT~Dvsi~~~g~~~~~--~~~~~g-g~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 68 (196)
T d1jcea2 7 SGNMVVDIGGGTTEVAVISLGSIVTW--ESIRIA-GDEMDEAIVQYVRETYR---------------VAIGERTAERVKI 68 (196)
T ss_dssp SCEEEEEECSSCEEEEEEETTEEEEE--EEESCS-HHHHHHHHHHHHHHHHC---------------EECCHHHHHHHHH
T ss_pred CceEEEEcCCCcEEEEEEEcCCEeEE--eeecCC-Ccccccchhhhhhhhhc---------------ccccchhHHHHHH
Confidence 35699999999999998888876543 567888 99999988888765430 1112223344444
Q ss_pred hceeeccchHHHHHHhcCCCCCCCCceEEeCCCCCE--EEecccccccccccccCCCCCCCcHHHHHHHHHHcCCccccc
Q psy9135 936 CSCFVTTMERSAEIAAKNPDHKYPSGFMYPLKNGKK--IPVSGHIRETAFEVLFELDLDMLNIATIILDSLLSVASSDGR 1013 (1107)
Q Consensus 936 ~~c~v~~~~~~~~~~~~~~~~~~~~~~~y~Lpdg~~--i~l~~~erf~~~E~LF~P~~~~~gL~~~I~~sI~~~~~~d~r 1013 (1107)
............ ... .......+.++.. ..+...+.....+.++. .+.+.|.+++..+. ....
T Consensus 69 ~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~l~~~~-~~~~ 133 (196)
T d1jcea2 69 EIGNVFPSKEND--ELE------TTVSGIDLSTGLPRKLTLKGGEVREALRSVVV------AIVESVRTTLEKTP-PELV 133 (196)
T ss_dssp HHCBCSCCHHHH--HCE------EEEEEEETTTTEEEEEEEEHHHHHHHTHHHHH------HHHHHHHHHHHTSC-HHHH
T ss_pred HHhhhhhhhhcc--ccc------eeeeeeeccCCCccccccchhhHHHHHHHHHH------HHHHHHHHHHHHhh-cccc
Confidence 333333222111 110 1111222333321 11212333444444443 57778888888776 4433
Q ss_pred cc-----C---CCCCCCCCccchHHHHHhhhhCCCcccccccceeeEEEEeCCCCcceehhhhHHHhhc
Q psy9135 1014 EE-----T---QYFPFRCWVNTRTPEKLCCLVGWSNICCYKLFIKNFKFHEFPAKENYVAWLGGAIFAA 1074 (1107)
Q Consensus 1014 ~~-----L---~Gf~~~~~~~eRL~~EL~~l~p~~~~~~~~~~~~~~~v~~~~~~~~~~aW~GgSIlas 1074 (1107)
.. + .|-+..+++.+++++.+.. | +.+ ..+|..++.+||+++++
T Consensus 134 ~~~~~~~IvLvGGsS~ip~v~~~l~~~fg~--~-------------v~~---~~~P~~aVA~GAai~~~ 184 (196)
T d1jcea2 134 SDIIERGIFLTGGGSLLRGLDTLLQKETGI--S-------------VIR---SEEPLTAVAKGAGMVLD 184 (196)
T ss_dssp HHHHHHCEEEESGGGCSBTHHHHHHHHHSS--C-------------EEE---CSSTTTHHHHHHHHGGG
T ss_pred ccccccceEEeCchhcchhHHHHHHHHHCc--C-------------Ccc---CCChHHHHHHHHHHHHH
Confidence 21 1 2222223338888876632 2 112 23789999999999864
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.44 E-value=0.095 Score=51.09 Aligned_cols=65 Identities=11% Similarity=-0.008 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHh---hccccCCCCCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC
Q psy9135 94 GLLIEFIRKIFF---KYFVTSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 161 (1107)
Q Consensus 94 ~~le~i~~~~~~---~~L~~~~~~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~ 161 (1107)
+....+++++.. +.++. .-..++++.|...+..+|+.+.+ ..+.-|++-+.++++|.+|++++|.
T Consensus 115 el~a~~l~~l~~~a~~~~~~--~~~~~VitvPa~f~~~qr~~~~~-Aa~~AGl~~~~li~EP~AAAl~Ygl 182 (185)
T d1bupa1 115 EVSSMVLTKMKEIAEAYLGK--TVTNAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGL 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHHHHHHH-HHHHTTCEEEEEEEHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEEEcCHHHHHHHhcc
Confidence 334445555432 33332 34568999999999999998776 4688999999999999999999875
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=93.86 E-value=0.12 Score=47.50 Aligned_cols=114 Identities=11% Similarity=-0.008 Sum_probs=75.0
Q ss_pred eEEEecCcceEEEeccCCCCccEEEecceeccCCCCc----------------ccee----ecCCHHhhHHHHHHHHHHH
Q psy9135 738 GVVLDIGSKYTKYGIFGSFQPKGFIKSQVKDPHTNKL----------------RNLY----EYKDADDLYGLLIEFIRKI 797 (1107)
Q Consensus 738 ~vViD~Gs~~iK~G~age~~P~~i~ps~vg~~~~~~~----------------~~~~----~~~~~~~~~d~le~i~~~~ 797 (1107)
.|=||+|+.++.+...++.. -...|+..+.....+. .... ..++.....+..+.++.++
T Consensus 2 ~iGIDlGTtns~va~~~~~~-v~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 80 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKGI-VVNEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTVALVMLRYF 80 (137)
T ss_dssp EEEEEECSSEEEEEETTTEE-EEEEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHHHHHHHHHH
T ss_pred eEEEEcChhhEEEEEeCCCE-EeecCCcceEecCCCeEEEEehHHhhhhhhccccceeEEeccCCccCcHHHHHHHHHHH
Confidence 57899999999998766542 2234666654432211 0000 1112233355556666655
Q ss_pred HHhccc-cCCCCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhccc
Q psy9135 798 FFKYFV-TSPKDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTL 853 (1107)
Q Consensus 798 ~~~~L~-~~~~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~ 853 (1107)
...... .......++++.|...+..+|+.+.+.. +.-|+.-+.++++|++|+.|+
T Consensus 81 ~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa-~~AGl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 81 INKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG-LEAGASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp HHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCSEEEEEEHHHHHHHHT
T ss_pred HHHHHhhcCccccceEEEeecccCHHHHHHHHHHH-HHcCCCEEEEeCCHHHHHhCC
Confidence 533222 2335567999999999999999888755 678999999999999998875
|
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=92.92 E-value=0.052 Score=53.76 Aligned_cols=51 Identities=27% Similarity=0.332 Sum_probs=34.0
Q ss_pred CCceEEEEEcCCCceEEEEEEc------CEe-eccceEEEeccchHHHHHHHHHHHHhh
Q psy9135 854 GVNTGLVLDIGYSEATLLPVYE------GVP-VLCAWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 854 g~~tglVVDiG~~~T~v~PV~d------G~~-l~~~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
|..+=+|+|+|.+++.++-+-= +.. +........+| |+++++.|.+.+.++
T Consensus 1 g~~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lG-G~~~D~~l~~~~~~~ 58 (198)
T d1dkgd2 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLG-GEDFDSRLINYLVEE 58 (198)
T ss_dssp CEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCS-HHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCC-HHHHHHHHHHHHHHH
Confidence 3456789999999999876641 111 11111224578 999999999888653
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.57 E-value=0.45 Score=45.92 Aligned_cols=48 Identities=10% Similarity=-0.014 Sum_probs=41.5
Q ss_pred CCceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC
Q psy9135 807 KDKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 855 (1107)
Q Consensus 807 ~~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~ 855 (1107)
.-..++|+.|...+..+|+.+.+.. +.-|++-+.++++|.+|++++|.
T Consensus 135 ~~~~~VitvPa~f~~~qr~~~~~Aa-~~AGl~~~~li~EP~AAAl~Ygl 182 (185)
T d1bupa1 135 TVTNAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGL 182 (185)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTT
T ss_pred CcCcEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHhcc
Confidence 3456899999999999999888765 77899999999999999999874
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.80 E-value=0.14 Score=50.19 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=31.7
Q ss_pred ceEEEEEcCCCceEEEEE--EcCEeeccceE-EEeccchHHHHHHHHHHHHh
Q psy9135 856 NTGLVLDIGYSEATLLPV--YEGVPVLCAWK-DLSLGGGQSVESHIRSLLID 904 (1107)
Q Consensus 856 ~tglVVDiG~~~T~v~PV--~dG~~l~~~~~-~~~~G~G~~lt~~L~~lL~~ 904 (1107)
.+=+|+|+|+++|.++-+ .++..--.+.. ...+| |+++++.+.+.+.+
T Consensus 5 ~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lG-G~~~D~~l~~~~~~ 55 (193)
T d1bupa2 5 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG-GEDFDNRMVNHFIA 55 (193)
T ss_dssp EEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCS-HHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcc-hhHHHHHHHHHHHH
Confidence 467999999999997743 22221111222 23578 99999988888754
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=87.73 E-value=0.54 Score=45.26 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=40.6
Q ss_pred CceEEEEeccCCchHHHHHHHHHHhcccCcceeeecccchhhhcccCC
Q psy9135 808 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 855 (1107)
Q Consensus 808 ~~~vll~e~~~~~~~~re~l~eiLFE~~~vpsv~~~~~~~lalya~g~ 855 (1107)
-..++|+.|...+..+|+.+.+.. +.-|++-+.++++|.+|++++|.
T Consensus 133 ~~~~VitVPa~f~~~~r~~l~~Aa-~~AG~~~~~li~EP~AAAl~Ygl 179 (183)
T d1dkgd1 133 VTEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAYGL 179 (183)
T ss_dssp CCEEEECBCTTCCHHHHHHHHHHH-HHTTCEESCCCBHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCHHHHHHHhcc
Confidence 456899999999999999888865 45799999999999999988874
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=84.87 E-value=1.1 Score=42.89 Aligned_cols=47 Identities=6% Similarity=-0.050 Sum_probs=40.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHhhcCcceEEEecchhhhhccCCC
Q psy9135 114 DKRIVVVESVLTPTVWRNTLAKVLFKHYEVLSLLYVPSHLVSLCTLGV 161 (1107)
Q Consensus 114 ~~~vllte~~~~~~~~re~l~eilFE~~~vpsv~~~~~~lls~y~~g~ 161 (1107)
-..++++.|...+...|+.|.+ ..+.-|++-+.++++|.+|++++|.
T Consensus 133 ~~~~VitVPa~f~~~~r~~l~~-Aa~~AG~~~~~li~EP~AAAl~Ygl 179 (183)
T d1dkgd1 133 VTEAVITVPAYFNDAQRQATKD-AGRIAGLEVKRIINEPTAAALAYGL 179 (183)
T ss_dssp CCEEEECBCTTCCHHHHHHHHH-HHHHTTCEESCCCBHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCHHHHHHHHH-HHHHcCCCEEEEecCHHHHHHHhcc
Confidence 4569999999999999998776 5557799999999999999988875
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=81.12 E-value=1.3 Score=41.26 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=36.6
Q ss_pred ceEEEEEeCCCceEEEEeecC--EecccceEEecccHHHHHHHHHHh
Q psy9135 162 NTGLVLDIGYSEATLLPVYEG--VPVLCAWKDLSLGGQSVEAHIRRG 206 (1107)
Q Consensus 162 ~tglVVDiG~~~T~V~PV~dG--~vl~~~~~~~~iGG~~lt~~L~~l 206 (1107)
.+.+|||+|+.+|.++-+.+| ..........+.|+.++.+.+.+.
T Consensus 6 g~~lviDIG~gTtDi~v~~~~~~~~~~~~~~~~~~g~~~i~~~i~~~ 52 (161)
T d2fsja1 6 GYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRK 52 (161)
T ss_dssp SEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHH
T ss_pred CcEEEEEcCcCeEEEEEEECCCeEEEEEEeccHhHHHHHHHHHHHHH
Confidence 467999999999999988765 444544567889999999999888
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=80.40 E-value=1.4 Score=40.98 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCceEEEEEEcC--EeeccceEEEeccchHHHHHHHHHHHHhhc
Q psy9135 856 NTGLVLDIGYSEATLLPVYEG--VPVLCAWKDLSLGGGQSVESHIRSLLIDEI 906 (1107)
Q Consensus 856 ~tglVVDiG~~~T~v~PV~dG--~~l~~~~~~~~~G~G~~lt~~L~~lL~~~~ 906 (1107)
.+.+|||+|+.+|.++-+.+| .+........+.| +.++.+.+.+.++.+.
T Consensus 6 g~~lviDIG~gTtDi~v~~~~~~~~~~~~~~~~~~g-~~~i~~~i~~~i~~~~ 57 (161)
T d2fsja1 6 GYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIG-VGDAISALSRKIAKET 57 (161)
T ss_dssp SEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCC-HHHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCcCeEEEEEEECCCeEEEEEEeccHhHH-HHHHHHHHHHHHHHHH
Confidence 357999999999999988765 4455455667888 9999999998887653
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=80.32 E-value=0.68 Score=43.19 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCceEEEEEEcCEeecc-ceEEEeccchHHHHHHHHHHHHhh
Q psy9135 856 NTGLVLDIGYSEATLLPVYEGVPVLC-AWKDLSLGGGQSVESHIRSLLIDE 905 (1107)
Q Consensus 856 ~tglVVDiG~~~T~v~PV~dG~~l~~-~~~~~~~G~G~~lt~~L~~lL~~~ 905 (1107)
.+-+|+|+|+.+|.++.+-.|..... +....+.| |.++++.+.+.|...
T Consensus 7 ~~ilViDiGggTtDi~v~~~~~~~~~~~~~~~~~G-~~~i~~~i~~~l~~~ 56 (163)
T d2zgya2 7 DSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLG-VSLVTSAVKDALSLA 56 (163)
T ss_dssp CEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCC-THHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCcEEEEEEcCCeEEEEEeecccccc-chHHHHHHHHhhHHh
Confidence 46799999999999997766655433 33455788 999999999888654
|