Psyllid ID: psy9169

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
Protein Sequence
MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPVNTVNGFNF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccccccccccEcccccccccccccccccccc
Coil and Loop (DISEMBL)
MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELrkahkddqlfkrrnidqldeieeenvtvieptcmspikmtvPEMIegmkssnpkMRMIATRSARKMlskerhppidelieagVVPICVEllddenpntqfEATWAltniasgtseqTMTVINANAIPKFLQLlssphlnlAEQATWALGNIAGDGARARDLLLglgtmpqilalvqpntpttfLRNIVWAISNLcrnknpapdfekiKICLPLLNQLIHTTDVETLSDICWALSyisdghndkiqAVVDTGVVPRLVELLDSEETTILTAALRTvgniatgndhqtdcVIQAGGLQKMKKLLSSSRVNIVKEAAWTIsnitagnsrqidhVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFndsaensiengdtiefnpqpvntvngfnf
Flexible Loop (DISEMBL)
msqkvaaidrkasfknagksfdeMRRKRCEMNVelrkahkddqlfkrrnidqldeieeenvtvieptcmspikMTVPEMIEgmkssnpkMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWtisnitagnsrQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGdtiefnpqpvntvngfnf
Low Complexity Region (SEG)
MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIagdgarardlllglgTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPVNTVNGFNF
Disordered region (IsUnstruct)
***********************************************************NVTVIEPTCM*****************************************DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN****************************
Disordered Region (DISOPRED)
****************************************DDQLF****************************MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPVN****FNF
Disordered Region (DISEMBL)
MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPVNTVNGFNF
Disordered Region (DISPRO)
******************K**DEMRRKRCEMNVELRKAHKDDQLFKR*N*****************TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQP*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSQKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPVNTVNGFNF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	440	2.2.26 [Sep-21-2011]
P52170	522	Importin subunit alpha-1	N/A	N/A	0.881	0.743	0.487	1e-104
P52171	523	Importin subunit alpha-2	N/A	N/A	0.881	0.741	0.487	1e-102
P52295	522	Importin subunit alpha OS	yes	N/A	0.970	0.818	0.416	1e-101
O00505	521	Importin subunit alpha-3	yes	N/A	0.970	0.819	0.394	1e-100
O35344	521	Importin subunit alpha-3	yes	N/A	0.970	0.819	0.394	1e-100
O35343	521	Importin subunit alpha-4	no	N/A	0.961	0.811	0.400	6e-99
O00629	521	Importin subunit alpha-4	no	N/A	0.959	0.809	0.396	4e-98
P52292	529	Importin subunit alpha-2	no	N/A	0.804	0.669	0.494	1e-97
P52293	529	Importin subunit alpha-2	no	N/A	0.804	0.669	0.489	3e-96
C1JZ66	522	Importin subunit alpha-8	no	N/A	0.806	0.680	0.485	7e-93

>sp|P52170|IMA1_XENLA Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/396 (48%), Positives = 266/396 (67%), Gaps = 8/396 (2%)

Query: 7   AIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEP 66
           A +R   FKN GK   E+RR+R E++VELRKA KD+Q+ KRRN+     + EE +   E 
Sbjct: 7   ADERMRKFKNKGKDTAELRRRRVEVSVELRKAKKDEQILKRRNVC----LPEELILSPEK 62

Query: 67  TCMSPIK---MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 123
             M  ++   +++ E+++GM S +P+  +  T++ARKMLS+ER+PP++++IEAG++P  V
Sbjct: 63  NAMQSVQVPPLSLEEIVQGMNSGDPENELRCTQAARKMLSRERNPPLNDIIEAGLIPKLV 122

Query: 124 ELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
           E L   +N   QFEA WALTNIASGTS+QT +V++  AIP F+ L+SSPHL+++EQA WA
Sbjct: 123 EFLSRHDNSTLQFEAAWALTNIASGTSDQTKSVVDGGAIPAFISLISSPHLHISEQAVWA 182

Query: 183 LGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242
           LGNIAGDG   RD L+    +P +LALV P TP  +LRNI W +SNLCRNKNP P    +
Sbjct: 183 LGNIAGDGPLYRDALINCNVIPPLLALVNPQTPLGYLRNITWMLSNLCRNKNPYPPMSAV 242

Query: 243 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
              LP+L QL+H  D + LSD CWA+SY++DG ND+I  VV TG+V RL++L+ S E +I
Sbjct: 243 LQILPVLTQLMHHDDKDILSDTCWAMSYLTDGSNDRIDVVVKTGIVDRLIQLMYSPELSI 302

Query: 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
           +T +LRTVGNI TG D QT   I AG L  + +LL   + +I KEAAW ISNI AG + Q
Sbjct: 303 VTPSLRTVGNIVTGTDKQTQAAIDAGVLSVLPQLLRHQKPSIQKEAAWAISNIAAGPAPQ 362

Query: 363 IDHVIQEGELNQMALLVEESGGLEKLEALQHHENET 398
           I  +I  G L+ +  L+ +     + EA+    N T
Sbjct: 363 IQQMITCGLLSPLVDLLNKGDFKAQKEAVWAVTNYT 398

Essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope.
Xenopus laevis (taxid: 8355)

>sp|P52171|IMA2_XENLA Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/396 (48%), Positives = 265/396 (66%), Gaps = 8/396 (2%)

Query: 7   AIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEP 66
           A +R   FKN GK   E+RR+R E++VELRKA KD+Q+ KRRN+       EE +   E 
Sbjct: 7   ADERMRKFKNKGKDTAELRRRRVEVSVELRKAKKDEQILKRRNVC----FPEELILSPEK 62

Query: 67  TCMSPIK---MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 123
             M  I+   +++ E+++GM S + +  + +T++ARKMLSKER+PP++++IEAG++P  V
Sbjct: 63  NAMQSIQVPQLSLEEIVQGMNSGDNENELRSTQAARKMLSKERNPPLNDIIEAGLIPKLV 122

Query: 124 ELLDDENPNT-QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
           E L   N +T QFEA WALTNIASGTS+QT +V++  AIP F+ L+SSPHL+++EQA WA
Sbjct: 123 EFLSYHNNSTLQFEAAWALTNIASGTSDQTKSVVDGGAIPAFISLISSPHLHISEQAVWA 182

Query: 183 LGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242
           LGNIAGDG   RD L+    +P +L LV P TP  +LRNI W +SNLCRNKNP P    +
Sbjct: 183 LGNIAGDGPLYRDALISCNVIPPLLTLVNPQTPLGYLRNITWTLSNLCRNKNPYPPMSAV 242

Query: 243 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
              LP+L QL+   D + LSD CWA+SY++DG ND+I  VV TG+V RL++L+ S E +I
Sbjct: 243 LQILPVLTQLMLHEDKDILSDTCWAMSYLTDGSNDRIDVVVKTGLVERLIQLMYSPELSI 302

Query: 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
           LT +LRTVGNI TG D QT   I AG L  + +LL   + +I KEAAW +SNI AG + Q
Sbjct: 303 LTPSLRTVGNIVTGTDKQTQAAIDAGVLSVLPQLLRHQKPSIQKEAAWALSNIAAGPAPQ 362

Query: 363 IDHVIQEGELNQMALLVEESGGLEKLEALQHHENET 398
           I  +I  G L+ +  L+++     + EA+    N T
Sbjct: 363 IQQMITCGLLSPLVDLLKKGDFKAQKEAVWAVTNYT 398

It is essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope.

Xenopus laevis (taxid: 8355)

>sp|P52295|IMA_DROME Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2

 Score =  368 bits (944), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/518 (41%), Positives = 295/518 (56%), Gaps = 91/518 (17%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           R+ S+K    +  + R +R E+ +ELRK+ K+DQ+FKRRNI+     E+    + E    
Sbjct: 9   RQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNIND----EDLTSPLKELNGQ 64

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE 129
           SP++++V E++  M S + + + +  +SARKMLS+ER+PPID +I  G+VPIC+  L + 
Sbjct: 65  SPVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNT 124

Query: 130 NPNT-QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188
           N +  QFEA WALTNIASGTS+QT  VI  NA+P F+ LL S  +NLAEQA WALGNIAG
Sbjct: 125 NNSMLQFEAAWALTNIASGTSDQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWALGNIAG 184

Query: 189 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
           DGA ARD+++    +  IL L+   TP +FLRNIVW +SNLCRNKNP+P F+++K  LP+
Sbjct: 185 DGAAARDIVIHHNVIDGILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPV 244

Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           L+QL+ + D++ L+D CWALSY++D  N KIQAVVD+  VPRLV+LL  +E +I+  ALR
Sbjct: 245 LSQLLLSQDIQVLADACWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSIIVPALR 304

Query: 309 TVGNIATGNDHQTD------------------------------------------CVIQ 326
           +VGNI TG D QTD                                           VIQ
Sbjct: 305 SVGNIVTGTDQQTDVVIASGGLPRLGLLLQHNKSNIVKEAAWTVSNITAGNQKQIQAVIQ 364

Query: 327 AGGLQKMKKLLSSSRVNIVKEAAWTISN-ITAGNSRQIDHVIQE---------------- 369
           AG  Q+++ +L        KEAAW ++N  T+G   QI  +I++                
Sbjct: 365 AGIFQQLRTVLEKGDFKAQKEAAWAVTNTTTSGTPEQIVDLIEKYKILKPFIDLLDTKDP 424

Query: 370 --------------------GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM 409
                               G    + L+VEE GGL+KLE LQ HENE VY+K Y II  
Sbjct: 425 RTIKVVQTGLSNLFALAEKLGGTENLCLMVEEMGGLDKLETLQQHENEEVYKKAYAIIDT 484

Query: 410 AF---NDSAENSI---ENGDTIEFNP-QPVNTVNGFNF 440
            F   +D AE  +   E    +EFN  QP     G+ F
Sbjct: 485 YFSNGDDEAEQELAPQEVNGALEFNATQPKAPEGGYTF 522

It is required for normal cell proliferation and may serve as an adapter molecule to form complexes with other proteins. May act as a tumor suppressor in hematopoietic cells. May play a role in the nuclear import of karyophilic proteins and some of these may be required for the normal transmission and function of proliferative signals in the cells.

Drosophila melanogaster (taxid: 7227)

>sp|O00505|IMA3_HUMAN Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/515 (39%), Positives = 292/515 (56%), Gaps = 88/515 (17%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           R  SFKN G+  + MRR R E+ VELRK  +D+ L K+RN+ Q + +E+ +V        
Sbjct: 11  RIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVD----ADF 66

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
               +T+  +++   S NP +++ A ++ARK+LS +R+PPID+LI++G++PI V+ L+ D
Sbjct: 67  KAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERD 126

Query: 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188
           +NP+ QFEA WALTNIASGTS QT  V+ +NA+P FL+LL SPH N+ EQA WALGNI G
Sbjct: 127 DNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIG 186

Query: 189 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
           DG + RD ++ LG +  +L+ + P+ P TFLRN+ W I NLCRNK+P P  E ++  LP 
Sbjct: 187 DGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPA 246

Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           L  LI+ TD+  L D  WALSY++DG N++IQ V+D+GVVP LV LL  +E  + TAALR
Sbjct: 247 LCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALR 306

Query: 309 TVGNIATGNDHQTDCV------------------------------IQAGGLQKMKKLLS 338
            VGNI TG D QT  V                              I AG  Q+++ ++ 
Sbjct: 307 AVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVID 366

Query: 339 SSRVNIV------------KEAAWTISNIT-AGNSRQIDHVIQEG--------------- 370
           +  + ++            KEAAW ISN+T +G   Q+++++Q+                
Sbjct: 367 AGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQ 426

Query: 371 ------------------ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF- 411
                             E + +A ++EE GGLEK+E LQ HENE +Y+  ++II   F 
Sbjct: 427 VVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFS 486

Query: 412 -NDSAENSI-----ENGDTIEFNPQPVNTVNGFNF 440
            +D  E+         G T  F+P        FNF
Sbjct: 487 GDDIDEDPCLIPEATQGGTYNFDPTANLQTKEFNF 521

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. Recognizes NLSs of influenza A virus nucleoprotein probably through ARM repeats 7-9.

Homo sapiens (taxid: 9606)

>sp|O35344|IMA3_MOUSE Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/515 (39%), Positives = 292/515 (56%), Gaps = 88/515 (17%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           R  SFKN G+  + MRR R E+ VELRK  +D+ L K+RN+ Q + +E+ +V        
Sbjct: 11  RIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVD----ADF 66

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
               +T+  +++   S NP +++ A ++ARK+LS +R+PPID+LI++G++PI V+ L+ D
Sbjct: 67  KAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERD 126

Query: 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188
           +NP+ QFEA WALTNIASGTS QT  V+ +NA+P FL+LL SPH N+ EQA WALGNI G
Sbjct: 127 DNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIG 186

Query: 189 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
           DG + RD ++ LG +  +L+ + P+ P TFLRN+ W I NLCRNK+P P  E ++  LP 
Sbjct: 187 DGPQCRDYVISLGVVKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPA 246

Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           L  LI+ TD+  L D  WALSY++DG N++IQ V+D+GVVP LV LL  +E  + TAALR
Sbjct: 247 LCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALR 306

Query: 309 TVGNIATGNDHQTDCV------------------------------IQAGGLQKMKKLLS 338
            VGNI TG D QT  V                              I AG  Q+++ ++ 
Sbjct: 307 AVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVID 366

Query: 339 SSRVNIV------------KEAAWTISNIT-AGNSRQIDHVIQEG--------------- 370
           +  + ++            KEAAW ISN+T +G   Q+++++Q+                
Sbjct: 367 AGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLLSVKDSQ 426

Query: 371 ------------------ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF- 411
                             E + +A ++EE GGLEK+E LQ HENE +Y+  ++II   F 
Sbjct: 427 VVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFS 486

Query: 412 -NDSAEN-----SIENGDTIEFNPQPVNTVNGFNF 440
            +D  E+         G T  F+P        FNF
Sbjct: 487 GDDIDEDPSLIPEATQGGTYNFDPTANLQTKEFNF 521

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS.

Mus musculus (taxid: 10090)

>sp|O35343|IMA4_MOUSE Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1

 Score =  361 bits (927), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 208/519 (40%), Positives = 293/519 (56%), Gaps = 96/519 (18%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENV---TVIEP 66
           R  +FKN G+  + MRR+R E+ VELRK  +D+ L KRRN+ Q D  E+ ++     ++ 
Sbjct: 11  RLKNFKNKGRDLETMRRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQN 70

Query: 67  TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL 126
           T +  I       ++   S N  +++ A ++ARK+LS +R+PPID+LI++G++PI V  L
Sbjct: 71  TSLEAI-------VQNASSDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCL 123

Query: 127 D-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
           + D+NP+ QFEA WALTNIASGTSEQT  V+ +NA+P FL+LL SPH N+ EQA WALGN
Sbjct: 124 ERDDNPSLQFEAAWALTNIASGTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGN 183

Query: 186 IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
           I GDG + RD ++ LG +  +L+ + P+ P TFLRN+ W + NLCR+K+P P  E I+  
Sbjct: 184 IIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEI 243

Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L  LIH TDV  L D  WALSY++D  N++IQ V+D+G+VP LV LL  +E  + TA
Sbjct: 244 LPALCVLIHHTDVNILVDTVWALSYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTA 303

Query: 306 ALRTVGNIATGNDHQTDCV------------------------------IQAGGLQKMKK 335
           ALR VGNI TG D QT  V                              I AG  Q+++ 
Sbjct: 304 ALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQA 363

Query: 336 LLSSSRVNIV------------KEAAWTISNIT-AGNSRQIDHVIQ-------------- 368
           ++ ++ V ++            KEAAW ISN+T +G   Q+ ++IQ              
Sbjct: 364 VIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVK 423

Query: 369 -------------------EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM 409
                              E +   +A L+EE GGLEK+E LQ+HENE +Y+  Y+II  
Sbjct: 424 DAQVVQVVLDGLSNILKMAEDQAETIANLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQ 483

Query: 410 AF--NDSAEN------SIENGDTIEFNPQPVNTVNGFNF 440
            F  +D  E+      S++ G T  FN        GF F
Sbjct: 484 FFSSDDIDEDPSLVPESVQGG-TFGFNSSTNVPTEGFQF 521

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|O00629|IMA4_HUMAN Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1

 Score =  358 bits (920), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 206/520 (39%), Positives = 290/520 (55%), Gaps = 98/520 (18%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENV---TVIEP 66
           R  +FKN G+  + MRR+R E+ VELRK  +D+ L KRRN+   D  E+ ++     ++ 
Sbjct: 11  RLKNFKNKGRDLETMRRQRNEVVVELRKNKRDEHLLKRRNVPHEDICEDSDIDGDYRVQN 70

Query: 67  TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL 126
           T +  I       ++   S N  +++ A ++ARK+LS +R+PPID+LI++G++PI V  L
Sbjct: 71  TSLEAI-------VQNASSDNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCL 123

Query: 127 D-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
           + D+NP+ QFEA WALTNIASGTSEQT  V+ +NA+P FL+LL SPH N+ EQA WALGN
Sbjct: 124 ERDDNPSLQFEAAWALTNIASGTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGN 183

Query: 186 IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
           I GDG + RD ++ LG +  +L+ + P+ P TFLRN+ W + NLCR+K+P P  E I+  
Sbjct: 184 IIGDGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEI 243

Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L  LIH TDV  L D  WALSY++D  N++IQ V+D+G+VP LV LL  +E  + TA
Sbjct: 244 LPALCVLIHHTDVNILVDTVWALSYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVKVQTA 303

Query: 306 ALRTVGNIATGNDHQTDCV------------------------------IQAGGLQKMKK 335
           ALR VGNI TG D QT  V                              I AG  Q+++ 
Sbjct: 304 ALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFLSNITAGNQQQVQA 363

Query: 336 LLSSSRVNIV------------KEAAWTISNIT-AGNSRQIDHVIQ-------------- 368
           ++ ++ V ++            KEAAW ISN+T +G   Q+ ++IQ              
Sbjct: 364 VIDANLVPMIIHLLDKGDFGTQKEAAWAISNLTISGRKDQVAYLIQQNVIPPFCNLLTVK 423

Query: 369 -------------------EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM 409
                              E E   +  L+EE GGLEK+E LQ+HENE +Y+  Y+II  
Sbjct: 424 DAQVVQVVLDGLSNILKMAEDEAETIGNLIEECGGLEKIEQLQNHENEDIYKLAYEIIDQ 483

Query: 410 AFNDSAENSIEN---------GDTIEFNPQPVNTVNGFNF 440
            F  S+++  E+         G T  FN        GF F
Sbjct: 484 FF--SSDDIDEDPSLVPEAIQGGTFGFNSSANVPTEGFQF 521

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a nonclassical NLS.

Homo sapiens (taxid: 9606)

>sp|P52292|IMA2_HUMAN Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1

 Score =  357 bits (915), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/372 (49%), Positives = 249/372 (66%), Gaps = 18/372 (4%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-----DQLDEIEEENVTVI 64
           R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+     D    ++E      
Sbjct: 13  RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENR---- 68

Query: 65  EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
                  +  +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P  V 
Sbjct: 69  --NNQGTVNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 126

Query: 125 LLD--DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
            L   D +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WA
Sbjct: 127 FLGRTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 185

Query: 183 LGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPD 238
           LGNIAGDG+  RDL++  G +  +LAL+  P+  +    +LRN+ W +SNLCRNKNPAP 
Sbjct: 186 LGNIAGDGSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPP 245

Query: 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298
            + ++  LP L +L+H  D E L+D CWA+SY++DG N++I  VV TGVVP+LV+LL + 
Sbjct: 246 IDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGAS 305

Query: 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358
           E  I+T ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG
Sbjct: 306 ELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365

Query: 359 NSRQIDHVIQEG 370
              QI  V+  G
Sbjct: 366 RQDQIQQVVNHG 377

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

>sp|P52293|IMA2_MOUSE Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 182/372 (48%), Positives = 249/372 (66%), Gaps = 18/372 (4%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-----DQLDEIEEENVTVI 64
           R   FKN GK   EMRR+R E+NVELRKA KD+Q+ KRRN+     D    ++E      
Sbjct: 13  RLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENR---- 68

Query: 65  EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
                  +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V 
Sbjct: 69  --NNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 126

Query: 125 LLD--DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
            L   D +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WA
Sbjct: 127 FLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 185

Query: 183 LGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPD 238
           LGNIAGDG+  RDL++  G +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP 
Sbjct: 186 LGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 245

Query: 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298
            + ++  LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + 
Sbjct: 246 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305

Query: 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358
           E  I+T ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG
Sbjct: 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365

Query: 359 NSRQIDHVIQEG 370
              QI  V+  G
Sbjct: 366 RQDQIQQVVNHG 377

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|C1JZ66|IMA8_BOVIN Importin subunit alpha-8 OS=Bos taurus GN=KPNA7 PE=1 SV=2

 Score =  341 bits (874), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 178/367 (48%), Positives = 237/367 (64%), Gaps = 12/367 (3%)

Query: 9   DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNID--QLDEIEEENVTVIEP 66
           +R   FK  GK     R++R  +++ELRKA KD+Q  KRRNI    LD  +++   V   
Sbjct: 9   ERLRKFKYRGKDASARRQQRIAVSLELRKAKKDEQALKRRNITDVSLDPSDQQTKGV--- 65

Query: 67  TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL 126
                  +T+ E+I G+ +S+P++   AT++ARKMLS+E++PP+  +++AG++P  VELL
Sbjct: 66  ------SLTLQEIISGVNASDPELCFQATQAARKMLSREKNPPLKLIVDAGLIPRLVELL 119

Query: 127 DDE-NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
               +P  QFEA WALTNIASG SE T  V+   AI   ++LLSSPH+ + EQA WALGN
Sbjct: 120 KSSLHPRLQFEAAWALTNIASGASELTRAVVVGGAIQPLVELLSSPHMTVCEQAVWALGN 179

Query: 186 IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
           IAGDG   RD ++    +P +L LV  + P  FLRNI W +SNLCRNKNP P    +K  
Sbjct: 180 IAGDGPEFRDNVIASDAIPHLLTLVSSSIPVPFLRNIAWTLSNLCRNKNPYPSDHAVKQM 239

Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L  L+   D E LSD CWALSY++DG + +I  VVDTGV+PRLVEL+ S E  ILT 
Sbjct: 240 LPALFYLLGHPDREVLSDTCWALSYLTDGCDARIGQVVDTGVLPRLVELMSSSELNILTP 299

Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           +LRTVGNI TG DHQT   + AG L  + +LL+  R +I KEAAW +SN+ AG  + I  
Sbjct: 300 SLRTVGNIVTGTDHQTQLALDAGILGVLPQLLTHPRPSIQKEAAWALSNVAAGPRQHIQR 359

Query: 366 VIQEGEL 372
           +I  G L
Sbjct: 360 LIACGAL 366

Functions in nuclear protein import.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
322796155	425	hypothetical protein SINV_05723 [Solenop	0.904	0.936	0.507	1e-115
91077394	516	PREDICTED: similar to importin alpha 1a	0.940	0.802	0.462	1e-115
345488160	520	PREDICTED: importin subunit alpha-2-like	0.979	0.828	0.45	1e-114
380029460	520	PREDICTED: importin subunit alpha-2-like	0.843	0.713	0.568	1e-113
383858926	518	PREDICTED: importin subunit alpha-2-like	0.813	0.691	0.585	1e-112
350396236	519	PREDICTED: importin subunit alpha-2-like	0.961	0.815	0.454	1e-110
307199037	517	Importin subunit alpha-2 [Harpegnathos s	0.911	0.775	0.446	1e-110
195116553	522	GI17589 [Drosophila mojavensis] gi|19391	0.838	0.706	0.529	1e-109
340722259	519	PREDICTED: importin subunit alpha-2-like	0.961	0.815	0.448	1e-109
195398265	521	GJ17933 [Drosophila virilis] gi|19414139	0.984	0.831	0.422	1e-105

>gi|322796155|gb|EFZ18731.1| hypothetical protein SINV_05723 [Solenopsis invicta]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/418 (50%), Positives = 291/418 (69%), Gaps = 20/418 (4%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEE-ENVTVIEPTC 68
           R A+FK   +  +E R +R  ++VELRKA KDDQL KRRN++   E     +  ++  TC
Sbjct: 11  RIANFKFNNR-HEEARVRRNALSVELRKAKKDDQLSKRRNLNSEQESSSLSDKAIVSSTC 69

Query: 69  MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD- 127
           +     ++ E++  + SSN  +++ A ++ RK+LS+ER PPI+++IE G+VP+C++ LD 
Sbjct: 70  I----FSIEEIVNHLNSSNETLQLTAIQTCRKLLSRERDPPINDMIEGGIVPLCIKFLDN 125

Query: 128 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
           D+N + QFE TW LTNIASGTS QT  V+   A+PK ++LL S    +AEQA WALGNIA
Sbjct: 126 DDNISLQFEVTWVLTNIASGTSVQTQNVVKHGAVPKLVKLLQSASPMVAEQAVWALGNIA 185

Query: 188 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 247
           GDG  ARDL+LG   +P+++ L++P+TP TF RNIVW +SNLCRNKNP+P FE I+  LP
Sbjct: 186 GDGPYARDLVLGHDALPRLVDLIKPDTPMTFTRNIVWTLSNLCRNKNPSPSFELIRPLLP 245

Query: 248 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307
           + N+L+  TD + L+D CWALSY++DG NDKIQAV++TG++P+LVELL S E  ILT AL
Sbjct: 246 VFNRLLSYTDRDVLADTCWALSYLTDGTNDKIQAVLETGIIPKLVELLASREGAILTPAL 305

Query: 308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS------- 360
           R VGNI TGND QTD VI AGGL     LL   R NIVKEAAW +SNITA +        
Sbjct: 306 RAVGNIVTGNDAQTDAVISAGGLSHFGALLRYPRANIVKEAAWAVSNITAESKDWNIILV 365

Query: 361 -----RQIDHVIQE-GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412
                  I H  ++ G+++++A+++E+ GGL+K+EALQ+HENE VYQ+   II   F+
Sbjct: 366 VLDGLTNILHAAEKVGQVDKLAIMIEQVGGLDKIEALQNHENEEVYQRSMAIIDAFFS 423

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077394|ref|XP_975293.1| PREDICTED: similar to importin alpha 1a [Tribolium castaneum] gi|270001645|gb|EEZ98092.1| hypothetical protein TcasGA2_TC000505 [Tribolium castaneum]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/502 (46%), Positives = 301/502 (59%), Gaps = 88/502 (17%)

Query: 9   DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI-EPT 67
           +R  SFKN GK  +EMRR+R    +ELRKA K+DQL KRRNI     ++EE  T + E  
Sbjct: 5   NRIRSFKNKGKDCEEMRRRRAGQTIELRKAKKEDQLLKRRNIS----LQEEASTPLQENN 60

Query: 68  CMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD 127
            +S I M+  E++ GM S +  ++  AT++ RKMLS+ER+PPID +I  GVVP CVE L 
Sbjct: 61  SVSLITMSAEEILMGMMSPDENLQFKATQACRKMLSRERNPPIDHMIRLGVVPRCVEFLG 120

Query: 128 D-ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
              NP+  FEA WALTNIASGTSEQT  V+   A+PK  QLLSS  +++ EQA WA+GNI
Sbjct: 121 KTHNPSLVFEACWALTNIASGTSEQTAAVVQEGALPKLQQLLSSNRIDVVEQAIWAIGNI 180

Query: 187 AGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
           AGDG  +RDL+L  G +P ++ L++PNT  + LRN VW ISNLCRNKNP PDFE +K  L
Sbjct: 181 AGDGPESRDLVLNYGVLPSLINLIKPNTTLSLLRNTVWVISNLCRNKNPYPDFELVKPAL 240

Query: 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306
           P+L +L+   D + L+D CWALSY++DG N+KIQAV+DTG++ RLV LL SEE+T+LT A
Sbjct: 241 PVLARLLSHDDKDVLADTCWALSYLTDGSNEKIQAVLDTGLIDRLVMLLYSEESTVLTPA 300

Query: 307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI----------- 355
           LR VGNI TGNDHQTD VI AG L  M +LL  SR+NIVKEAAWT+SNI           
Sbjct: 301 LRAVGNIVTGNDHQTDMVINAGALDCMIRLLQHSRLNIVKEAAWTVSNITAGNSEQIQKV 360

Query: 356 --------------------------------TAGNSRQIDHVIQEGELNQM-------- 375
                                           + GNS Q+  +++ G L  M        
Sbjct: 361 LDAGILPYLLHVLQTGDFKSQKEAAWAVTNFTSGGNSAQLAQLVEMGALKPMCNLLNSKD 420

Query: 376 ---------------------------ALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408
                                      A+++EE GGL+ +EALQ H+NE VY++   II 
Sbjct: 421 SKTIIVVLEGLNNILSAAAKLNQAEKVAIMIEECGGLDGIEALQSHDNEKVYERALHIIE 480

Query: 409 MAFNDSAEN---SIENGDTIEF 427
             F D  E    ++ NG+ I+F
Sbjct: 481 NYFADGEEGVTVTVANGE-IQF 501

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488160|ref|XP_001605009.2| PREDICTED: importin subunit alpha-2-like [Nasonia vitripennis]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/520 (45%), Positives = 310/520 (59%), Gaps = 89/520 (17%)

Query: 5   VAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVI 64
           ++A  R + FK  GK FDE RR+R E++VELRKAHKD+QL K+RNI+    IE+E ++  
Sbjct: 6   MSANSRISKFKFQGK-FDEARRRRTEVSVELRKAHKDNQLLKKRNIN----IEDEPLSPP 60

Query: 65  EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
                    M++ E+I GM S + +  + AT++ RKMLS+ER+PPI+++IE G+VP+CVE
Sbjct: 61  SDQKSPVFNMSIDEIIAGMTSEDDQAMLQATQACRKMLSRERNPPINDMIEKGIVPLCVE 120

Query: 125 LLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWAL 183
            L    NP  QFEA WALTN+ASGTSEQT  V+   AIPK ++LL  P +N+AEQA WAL
Sbjct: 121 FLGYHHNPMLQFEACWALTNVASGTSEQTQVVVKYGAIPKLVELLKCPAINVAEQAVWAL 180

Query: 184 GNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK 243
           GNIAGDG  ARDL+L  G++  ++AL+ P T  +F+RNIVW +SNLCRNKNP P FE +K
Sbjct: 181 GNIAGDGPAARDLVLKEGSLSLLIALITPETSLSFVRNIVWTVSNLCRNKNPPPPFEIVK 240

Query: 244 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTIL 303
             LPLLN+L+   D + L D CWALSY++DG N++IQ V+D+GVVP+LVELL S E T+L
Sbjct: 241 DALPLLNRLLSYPDKDVLGDACWALSYLTDGTNERIQTVLDSGVVPKLVELLGSSEVTVL 300

Query: 304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT------------ 351
           T ALR VGNI TGND QTD +I AG L  +  LL+  RVN+VKEAAWT            
Sbjct: 301 TPALRAVGNIVTGNDLQTDTIISAGALNYLGALLTHKRVNLVKEAAWTISNITAGNDQQI 360

Query: 352 ------------------------------ISNITAGNS-RQIDHVIQ------------ 368
                                         I+N+T+G +  Q+  ++Q            
Sbjct: 361 QRIIDAGLLPLLIQVLHMGDFKSQKEAAWAITNLTSGGTVPQLALLVQLGVLTPFCNLLE 420

Query: 369 -----------------------EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 405
                                   GE++++AL++EE GGL+KLEALQ HENE VYQK   
Sbjct: 421 SKDWKCVLVVLDGLNNILNAAEKMGEVDRVALVIEEIGGLDKLEALQTHENENVYQKAVH 480

Query: 406 IISMAFNDSAEN----SIENGD-TIEFNPQPVNTVNGFNF 440
           +I   F+D   +       N D  +EF         GF F
Sbjct: 481 MIDTFFSDGEADPNLAPTTNMDGQLEFQATTTAPQGGFQF 520

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029460|ref|XP_003698390.1| PREDICTED: importin subunit alpha-2-like [Apis florea]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/378 (56%), Positives = 277/378 (73%), Gaps = 7/378 (1%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           RKA+FK   K  +E RR+R E++VELRKA KD+QL KRRN++    + +E+   +  + +
Sbjct: 11  RKANFKFNNK-HEEARRRRSEISVELRKARKDEQLLKRRNLN----VGKESQNPVSESNL 65

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
           SPI +++ E++ GMKSS+  +++ AT++ RKMLS+E++PPID +I+ G+VP CVE LD  
Sbjct: 66  SPISVSIEEIVNGMKSSDQTIQLQATQACRKMLSREKNPPIDIMIQRGIVPRCVEFLDYH 125

Query: 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188
            N   QFEA WALTN+ASGTSEQT  V+   AIPK + LL S   N+AEQA WALGNIAG
Sbjct: 126 HNAALQFEAAWALTNVASGTSEQTHVVVKHGAIPKLVALLKSASPNVAEQAVWALGNIAG 185

Query: 189 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
           DG  ARDL+LG   MP +L L++P+T  TF RNIVW +SNLCRNKNP P FE ++  LP+
Sbjct: 186 DGPAARDLVLGYDAMPLLLELIKPDTSVTFTRNIVWTLSNLCRNKNPPPPFEIVRTALPV 245

Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           LN+L+   D + L+D CWALSY++DG NDKIQAVV++GV+P+LV+LL S E T+LT ALR
Sbjct: 246 LNRLLSNNDKDILADACWALSYLTDGSNDKIQAVVESGVIPKLVQLLTSTEVTVLTPALR 305

Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
            VGNI TGND QTD +I AGGLQ +  LL   R+NIVKEAAWTISNITAGN  QI HVI 
Sbjct: 306 AVGNIVTGNDMQTDAIISAGGLQHLGLLLQHHRINIVKEAAWTISNITAGNIEQIQHVIN 365

Query: 369 EGELNQMALLVEESGGLE 386
            G L  + + V ESG  +
Sbjct: 366 AGLL-PLLIHVLESGDFK 382

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858926|ref|XP_003704950.1| PREDICTED: importin subunit alpha-2-like [Megachile rotundata]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/364 (58%), Positives = 267/364 (73%), Gaps = 6/364 (1%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           RK+SFK   K  DE RR+R E +VELRKA KD+QLFKRRN+     I +E  T  +    
Sbjct: 10  RKSSFKFNYK-HDEARRRRNEASVELRKARKDEQLFKRRNL----SIGKEQQTSTDENSH 64

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
           S +  ++ +++  MKSS+  +++ AT++ RKMLS+E++PPID +I+ G+VP CVE LD +
Sbjct: 65  SRLSTSINDIVNDMKSSDETIQLQATQACRKMLSREKNPPIDNMIKQGIVPRCVEFLDYN 124

Query: 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188
            NP  QFEA WALTN+ASGT+EQT  V+   AIPK + LL S   N+AEQA WALGNIAG
Sbjct: 125 HNPALQFEAAWALTNVASGTTEQTQFVVKHGAIPKLVALLKSASPNVAEQAVWALGNIAG 184

Query: 189 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
           DG  ARDL+LG  TMP +L L++P+T  TF RNIVW +SNLCRNKNP P FE ++  LP+
Sbjct: 185 DGPMARDLVLGHDTMPLLLELIKPDTSVTFTRNIVWTLSNLCRNKNPPPPFEIVRTALPV 244

Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           LN+L+  TD + L+D CWALSY++DG NDKIQAVVD+G++P+LVELL   E T+LT ALR
Sbjct: 245 LNRLLSNTDKDILADACWALSYLTDGSNDKIQAVVDSGIIPKLVELLALPEVTVLTPALR 304

Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
            VGNI TGND QTD +I AGGLQ +  LL   R+NIVKEAAWTISNITAGN  QI HVI 
Sbjct: 305 AVGNIVTGNDSQTDAIIAAGGLQHLGLLLQHHRINIVKEAAWTISNITAGNMEQIQHVIN 364

Query: 369 EGEL 372
            G L
Sbjct: 365 AGLL 368

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396236|ref|XP_003484488.1| PREDICTED: importin subunit alpha-2-like [Bombus impatiens]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/517 (45%), Positives = 317/517 (61%), Gaps = 94/517 (18%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           RKA+FK   K  +E RR+R E++VELRKA KD+QL KRRN++ + +  + +V+  + + +
Sbjct: 11  RKANFKFNYK-HEEARRRRNEISVELRKARKDEQLLKRRNLN-IGKESQSSVSESDHSLL 68

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
           S I     E++ GMKS +  +R+ AT++ RKMLS+E+ PPID +I+ G+VP+CVE LD  
Sbjct: 69  SSID----EIVTGMKSLDETIRLQATQTCRKMLSREKSPPIDNMIQRGIVPLCVEFLDYH 124

Query: 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188
            N   QFEA WALTN+ASGTSEQT+ V+   AIPK + LL S   N+AEQA WALGNIAG
Sbjct: 125 HNTALQFEAAWALTNVASGTSEQTLVVVKHGAIPKLVALLKSGSPNVAEQAVWALGNIAG 184

Query: 189 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
           DGA ARDL+LG   MP +L L++P+T  TF RNIVW +SNLCRNKNP P F+ ++  LP+
Sbjct: 185 DGAMARDLVLGTDAMPLLLELIKPDTSITFTRNIVWTLSNLCRNKNPPPPFDVVRTALPV 244

Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           LN+L+  +D + L+D CWALSY++DG NDKIQAVVD GV+P+LV+LL S E T+LT ALR
Sbjct: 245 LNRLLSNSDKDILADACWALSYLTDGPNDKIQAVVDCGVIPKLVQLLGSTEVTVLTPALR 304

Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA------------------- 349
           +VGNI TGND QTD +IQAGGLQ +  LL   R+NIVKEAA                   
Sbjct: 305 SVGNIVTGNDAQTDAIIQAGGLQYLGLLLQHHRLNIVKEAAWTISNITAGNMEQIQEVIN 364

Query: 350 -----------------------WTISNITAGNS-RQIDHVIQ----------------- 368
                                  W ++N+T+G S +Q+  ++Q                 
Sbjct: 365 AALLPPLIHVLECGDFKSQKEAAWAVTNLTSGGSVQQLAQLVQLGVLGPFCNLLEAKDWK 424

Query: 369 ------------------EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410
                              GE++++A+++EE GGL+KLEALQHHE E VYQK   +I   
Sbjct: 425 TIIVVLDGLSNICSAAEKMGEVDRVAIMIEEVGGLDKLEALQHHEVEQVYQKATAMIDTF 484

Query: 411 FNDS-------AENSIENGDTIEFNPQPVNTVNGFNF 440
           F++        A  +I +G  +EF        +GFNF
Sbjct: 485 FSEPEAQESTLATPTIADGQ-LEFKTTE-TAQSGFNF 519

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199037|gb|EFN79761.1| Importin subunit alpha-2 [Harpegnathos saltator]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/486 (44%), Positives = 297/486 (61%), Gaps = 85/486 (17%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           R A+FK   +  DE RR+R  +++ELRKA KD+QL KRRN++      EE V  +    +
Sbjct: 11  RMANFKFTNR-LDEARRRRNIVSIELRKAKKDEQLSKRRNLNT-----EEEVLNLSCESI 64

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
           SP   ++ +++ GM S +  +++ AT++ RK+LS+E+HPPI+ +I  G+VP CVELLD +
Sbjct: 65  SPNFSSIDDIVAGMNSPDETVQLQATQTCRKLLSREKHPPIETMINCGIVPRCVELLDCN 124

Query: 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188
            N   QFEA WALTN+ASGT+EQT  VI   A+P+ + LL SP  ++AEQA WALGNIAG
Sbjct: 125 HNVALQFEAAWALTNVASGTTEQTQVVIKYGAVPRLVMLLKSPSPSVAEQAVWALGNIAG 184

Query: 189 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
           DG   RDL+LG   MP +L L++P+T  +F+RNIVW +SNLCRNKNP P FE ++  LP 
Sbjct: 185 DGPSTRDLILGHDAMPLLLDLIKPDTSVSFMRNIVWTLSNLCRNKNPPPPFEIVQTALPA 244

Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           LN+L+ +TD + L+D CWALSY++DG NDKIQ V+D+G+V +LVELL S+E T+LT ALR
Sbjct: 245 LNRLLTSTDKDILADACWALSYLTDGSNDKIQVVLDSGIVSKLVELLSSQEGTVLTPALR 304

Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA------------------- 349
           TVGNI TG+D QTD +I AGGL  +  LL   R NIVKEAA                   
Sbjct: 305 TVGNIVTGDDAQTDSIIIAGGLTHLGNLLCHPRKNIVKEAAWAISNITAGNTEQIQHVIS 364

Query: 350 -----------------------WTISNITAGNS-RQIDHVIQEG--------------- 370
                                  W ++N+T+G S +Q+  ++Q G               
Sbjct: 365 AGILTPLVQVLKSGDFKAQKEAAWAVTNLTSGGSIQQLADLVQAGVLPPLCDLLVTKDWD 424

Query: 371 --------------------ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410
                               ++ Q+A++VEE+GGL+KLEALQHHENE +YQK   +I   
Sbjct: 425 TIIVILDGLNNILHAAEKLGQVEQIAIIVEEAGGLDKLEALQHHENERIYQKSMTMIDTF 484

Query: 411 FNDSAE 416
           F+   E
Sbjct: 485 FSGDGE 490

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195116553|ref|XP_002002818.1| GI17589 [Drosophila mojavensis] gi|193913393|gb|EDW12260.1| GI17589 [Drosophila mojavensis]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/374 (52%), Positives = 263/374 (70%), Gaps = 5/374 (1%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           R+  +K    +  + R +R E+ +ELRK+ K+DQLFKRRNI+     E+    + E    
Sbjct: 9   RQGHYKANTLNMQDSRMRRHEVTIELRKSKKEDQLFKRRNIND----EDLTSPLKELNGQ 64

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE 129
           SP+ ++V E++  M S +P+ + +  + ARKMLS+ER+PPID +I  G+VPIC+  L   
Sbjct: 65  SPVLLSVDEIVAAMNSEDPERQFVGMQQARKMLSRERNPPIDVMISHGIVPICIRFLQHN 124

Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 189
           NP  QFEA WALTNIASGTS+QT  VI  NA+P F+ LL S  LNLAEQA WALGNIAGD
Sbjct: 125 NPLLQFEAAWALTNIASGTSDQTRCVIEQNAVPHFIALLQSKSLNLAEQAVWALGNIAGD 184

Query: 190 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 249
           G  ARD+++    +  IL L+   TP +FLRNIVW +SNLCRNKNP+P F+++K  LP+L
Sbjct: 185 GPAARDIVIQHNVIDGILRLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQVKRLLPVL 244

Query: 250 NQ-LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           +Q L++  D++ L+D CWALSY++D  N+KIQAVVDT  VPRLV+LL ++E +I+  ALR
Sbjct: 245 SQLLVYQEDIQVLADACWALSYVTDDENNKIQAVVDTNAVPRLVQLLQTDEPSIIVPALR 304

Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
           +VGNI TG D QTD VI AGGL K+  LL  S+ NIVKEAAWT+SNITAGN +QI  VI 
Sbjct: 305 SVGNIVTGTDQQTDVVIAAGGLPKLGMLLQHSKGNIVKEAAWTVSNITAGNQKQIQAVID 364

Query: 369 EGELNQMALLVEES 382
            G   Q+  ++E+ 
Sbjct: 365 AGIFVQIRHVLEKG 378

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722259|ref|XP_003399525.1| PREDICTED: importin subunit alpha-2-like [Bombus terrestris]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/517 (44%), Positives = 317/517 (61%), Gaps = 94/517 (18%)

Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           RKA+FK   K  +E RR+R E++VELRKA KD+QL KRRN++ + +  + +V+  +   +
Sbjct: 11  RKANFKFNYK-HEEARRRRNEISVELRKARKDEQLLKRRNLN-IGKESQNSVSESDHLLL 68

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE 129
           S I     E++ GMKS +  +R+ AT++ RKMLS+E+ PPID +I+ G+VP+CVE LD  
Sbjct: 69  SSID----EIVNGMKSLDETIRLQATQTCRKMLSREKSPPIDNMIQRGIVPLCVEFLDYH 124

Query: 130 NPNT-QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 188
           + N  QFEA WALTN+ASGT+EQT+ VI   AIPK + LL S   N+AEQA WALGNIAG
Sbjct: 125 HNNALQFEAAWALTNVASGTTEQTLAVIKHGAIPKLVALLKSASPNVAEQAVWALGNIAG 184

Query: 189 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
           DGA ARDL+LG   MP +L L++P+T  TF RNIVW +SNLCRNKNP P F+ ++  LP+
Sbjct: 185 DGAMARDLVLGTDAMPLLLELIKPDTSITFTRNIVWTLSNLCRNKNPPPPFDVVRTALPV 244

Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           LN+L+  +D + L+D CWALSY++DG NDKIQAV+D GV+P+LV+LL S E T+LT ALR
Sbjct: 245 LNRLLSNSDKDILADACWALSYLTDGPNDKIQAVIDCGVIPKLVQLLGSTEVTVLTPALR 304

Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA------------------- 349
           +VGNI TGND QTD +IQAGGLQ +  LL   R+NIVKEAA                   
Sbjct: 305 SVGNIVTGNDAQTDVIIQAGGLQYLGLLLQHHRLNIVKEAAWTISNITAGNMEQIQEVIN 364

Query: 350 -----------------------WTISNITA-GNSRQIDHVIQ----------------- 368
                                  W ++N+T+ G+ +Q+  ++Q                 
Sbjct: 365 AALLPPLIHVLECGDFKSQKEAAWAVTNLTSSGSVQQLAQLVQLGVLGPFCNLLEAKDWK 424

Query: 369 ------------------EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410
                              GE++++A+++EE GGL+KLEALQHHE E VYQK   +I   
Sbjct: 425 TIIVVLDGLSNICSAAEKMGEVDRVAIMIEEVGGLDKLEALQHHEVEQVYQKATAMIDTF 484

Query: 411 FNDS-------AENSIENGDTIEFNPQPVNTVNGFNF 440
           F++        A  ++ +G  +EF        +GFNF
Sbjct: 485 FSEPEAQESTLATPAVADGQ-LEFKTTETAQ-SGFNF 519

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398265|ref|XP_002057743.1| GJ17933 [Drosophila virilis] gi|194141397|gb|EDW57816.1| GJ17933 [Drosophila virilis]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/523 (42%), Positives = 294/523 (56%), Gaps = 90/523 (17%)

Query: 4   KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTV 63
           K  A  R+  +K    +  + R +R E+ +ELRK+ K+DQ+FKRRNI+     E+    +
Sbjct: 3   KSDASTRQGHYKANTLNTQDSRMRRHEVTIELRKSKKEDQMFKRRNIND----EDLTSPL 58

Query: 64  IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 123
            E    SP+ ++V E++  M S + + + +  + ARKMLS+ER+PPID +I  G+VPIC+
Sbjct: 59  KELNGQSPVLLSVDEIVAAMNSEDSERQFVGMQQARKMLSRERNPPIDLMIGHGIVPICI 118

Query: 124 ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWAL 183
             L   N   QFEA WALTNIASGTSEQT  VI  NA+P F++LL S  LNLAEQA WAL
Sbjct: 119 RFLQSSNTILQFEAAWALTNIASGTSEQTRCVIEQNAVPHFIELLQSKSLNLAEQAVWAL 178

Query: 184 GNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK 243
           GNIAGDGA ARD+++    +  IL L+   TP +FLRNIVW +SNLCRNKNP+P FE++K
Sbjct: 179 GNIAGDGAAARDIVIQHNVIDGILRLINNETPLSFLRNIVWLMSNLCRNKNPSPPFEQVK 238

Query: 244 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTIL 303
             LP+L+QL+ + D++ L+D CWALSY++D  N+KIQAVVDT  VPRLV LL ++E +I+
Sbjct: 239 RLLPVLSQLLVSQDIQVLADACWALSYVTDDDNNKIQAVVDTDAVPRLVNLLQTDEPSII 298

Query: 304 TAALRTVGNIATGNDHQTD----------------------------------------- 322
             ALR+VGNI TG D QTD                                         
Sbjct: 299 VPALRSVGNIVTGTDQQTDVVIAAGGLPKLGLLLQHSKGNIVKEAAWTVSNITAGNQKQI 358

Query: 323 -CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN-ITAGNSRQIDHVIQE----------- 369
             VI AG  Q+++ +L        KEAAW ++N  T+G   QI  +I++           
Sbjct: 359 QAVIDAGIFQQIRHVLEKGDFKAQKEAAWAVTNTTTSGTPEQIVDLIEKYKILKPFIDLL 418

Query: 370 -------------------------GELNQMALLVEESGGLEKLEALQHHENETVYQKCY 404
                                    G    + L+VEE GGL+KLEALQ HENE VY+K Y
Sbjct: 419 DAKDPRTIKVVQTGLSNLFALAEKLGGTENLCLMVEELGGLDKLEALQQHENEEVYKKAY 478

Query: 405 KIISMAFN---DSAENSI---ENGDTIEFNP-QPVNTVNGFNF 440
            II   FN   D AE  +   E    +EFN  QP     G+ F
Sbjct: 479 AIIDTYFNTGDDEAEQELAPQEVNGALEFNATQPKAPEGGYTF 521

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	440
FB|FBgn0011823	522	Pen "Pendulin" [Drosophila mel	0.888	0.749	0.482	3e-94
ZFIN|ZDB-GENE-040718-22	546	kpna2 "karyopherin alpha 2 (RA	0.818	0.659	0.489	2.8e-89
UNIPROTKB|Q3SYV6	529	KPNA2 "Importin subunit alpha"	0.806	0.671	0.482	5.4e-86
UNIPROTKB|F1NJS6	528	KPNA2 "Importin subunit alpha"	0.806	0.672	0.484	6.9e-86
MGI|MGI:1100863	521	Kpna3 "karyopherin (importin)	0.875	0.738	0.454	1.1e-85
RGD|1311339	521	Kpna3 "karyopherin alpha 3" [R	0.875	0.738	0.454	1.1e-85
UNIPROTKB|O00505	521	KPNA3 "Importin subunit alpha-	0.875	0.738	0.454	1.1e-85
UNIPROTKB|P52292	529	KPNA2 "Importin subunit alpha-	0.806	0.671	0.476	4.9e-85
ZFIN|ZDB-GENE-030616-541	520	kpna3 "karyopherin (importin)	0.875	0.740	0.448	2.1e-84
UNIPROTKB|Q6P6T9	529	Kpna2 "Importin subunit alpha"	0.806	0.671	0.471	3.4e-84

FB|FBgn0011823 Pen "Pendulin" [Drosophila melanogaster (taxid:7227)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 191/396 (48%), Positives = 262/396 (66%)

Query:     4 KVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTV 63
             K  +  R+ S+K    +  + R +R E+ +ELRK+ K+DQ+FKRRNI+     E+    +
Sbjct:     3 KADSNSRQGSYKANSINTQDSRMRRHEVTIELRKSKKEDQMFKRRNIND----EDLTSPL 58

Query:    64 IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 123
              E    SP++++V E++  M S + + + +  +SARKMLS+ER+PPID +I  G+VPIC+
Sbjct:    59 KELNGQSPVQLSVDEIVAAMNSEDQERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICI 118

Query:   124 ELLDDENPNT-QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
               L + N +  QFEA WALTNIASGTS+QT  VI  NA+P F+ LL S  +NLAEQA WA
Sbjct:   119 RFLQNTNNSMLQFEAAWALTNIASGTSDQTRCVIEHNAVPHFVALLQSKSMNLAEQAVWA 178

Query:   183 LGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242
             LGNI                +  IL L+   TP +FLRNIVW +SNLCRNKNP+P F+++
Sbjct:   179 LGNIAGDGAAARDIVIHHNVIDGILPLINNETPLSFLRNIVWLMSNLCRNKNPSPPFDQV 238

Query:   243 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
             K  LP+L+QL+ + D++ L+D CWALSY++D  N KIQAVVD+  VPRLV+LL  +E +I
Sbjct:   239 KRLLPVLSQLLLSQDIQVLADACWALSYVTDDDNTKIQAVVDSDAVPRLVKLLQMDEPSI 298

Query:   303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
             +  ALR+VGNI TG D QTD VI +GGL ++  LL  ++ NIVKEAAWT+SNITAGN +Q
Sbjct:   299 IVPALRSVGNIVTGTDQQTDVVIASGGLPRLGLLLQHNKSNIVKEAAWTVSNITAGNQKQ 358

Query:   363 IDHVIQEGELNQMALLVEESGGLEKLEALQHHENET 398
             I  VIQ G   Q+  ++E+     + EA     N T
Sbjct:   359 IQAVIQAGIFQQLRTVLEKGDFKAQKEAAWAVTNTT 394

GO:0048542 "lymph gland development" evidence=IMP

GO:0005737 "cytoplasm" evidence=NAS;IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007303 "cytoplasmic transport, nurse cell to oocyte" evidence=NAS

GO:0015629 "actin cytoskeleton" evidence=NAS

GO:0016482 "cytoplasmic transport" evidence=IMP

GO:0008320 "protein transmembrane transporter activity" evidence=NAS

GO:0005643 "nuclear pore" evidence=NAS

GO:0006606 "protein import into nucleus" evidence=IEA;NAS

GO:0000059 "protein import into nucleus, docking" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=NAS

GO:0007291 "sperm individualization" evidence=IMP

GO:0007301 "female germline ring canal formation" evidence=IMP

GO:0042332 "gravitaxis" evidence=IMP

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

ZFIN|ZDB-GENE-040718-22 kpna2 "karyopherin alpha 2 (RAG cohort 1, importin alpha 1)" [Danio rerio (taxid:7955)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 179/366 (48%), Positives = 239/366 (65%)

Query:    10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
             R   FKN GK   E+RR+R E+NVELRKA KD+Q+ KRRN+    +     +      C 
Sbjct:    31 RLTQFKNKGKDATELRRRRIEVNVELRKAKKDEQILKRRNVSSFPDEATSPLQEKSQNCQ 90

Query:    70 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
             +    TV E++ G+ S+N + ++ AT++ARK+LS+ERHPPID +I AG++P  V  L   
Sbjct:    91 AQ-HWTVEEIVNGVNSNNLETQVQATQAARKLLSRERHPPIDRIISAGLIPKFVGFLSLV 149

Query:   129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXX 188
             ++P  QFEA WALTNIASGTS+QT  V+   AIP F+ L+SSPH +++EQA WALGNI  
Sbjct:   150 DSPPIQFEAAWALTNIASGTSDQTSAVVQGGAIPAFISLISSPHAHISEQAVWALGNIAG 209

Query:   189 XXXXXXXXXXXXXTMPQILALVQ-PNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKI 244
                           +P +LAL+  P+    P  +LRN+ W +SNLCRNKNPAP  E +K 
Sbjct:   210 DGSGYRDRVIKHGAIPPLLALLAVPDLSVFPAGYLRNVTWTLSNLCRNKNPAPPLEAVKQ 269

Query:   245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
              LP L  L+  +D E L+D CWA+SY++DG ND+I+ VV+ GVVPRLV+LL S E +I+T
Sbjct:   270 ILPTLICLLQHSDKEVLADTCWAISYLTDGPNDRIEVVVNAGVVPRLVQLLASGELSIVT 329

Query:   305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
              +LR++GNI TG D QT  V++AG L     LL   + NI KEA+WT+SNITAG   QI 
Sbjct:   330 PSLRSIGNIVTGTDEQTQAVLEAGALPMFPALLRHQKSNIQKEASWTLSNITAGRDYQIQ 389

Query:   365 HVIQEG 370
              VI  G
Sbjct:   390 EVINAG 395

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q3SYV6 KPNA2 "Importin subunit alpha" [Bos taurus (taxid:9913)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 175/363 (48%), Positives = 238/363 (65%)

Query:    14 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIK 73
             FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +  +           + 
Sbjct:    17 FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-DATSPLQENRNNQGTVN 75

Query:    74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENP 131
              +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D +P
Sbjct:    76 WSVDDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSP 135

Query:   132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXX 191
               QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI     
Sbjct:   136 -IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 194

Query:   192 XXXXXXXXXXTMPQILALVQ-PNTPTT---FLRNIVWAISNLCRNKNPAPDFEKIKICLP 247
                        +  +LAL+  P+  +    +LRN+ W +SNLCRNKNPAP  E I+  LP
Sbjct:   195 VFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPLEAIEQILP 254

Query:   248 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307
              L +L+H  D E L+D CWA+SY++DG N++I+ VV TGVVP+LV+LL + E  I+T AL
Sbjct:   255 TLVRLLHHDDPEVLADTCWAISYLTDGPNERIEMVVKTGVVPQLVKLLGATELPIVTPAL 314

Query:   308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 367
             R +GNI TG D QT  VI AG L     LL++S+ NI KEA WT+SNITAG   QI  V+
Sbjct:   315 RAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNSKTNIQKEATWTMSNITAGRQDQIQQVV 374

Query:   368 QEG 370
               G
Sbjct:   375 NHG 377

GO:0042826 "histone deacetylase binding" evidence=IEA

GO:0008139 "nuclear localization sequence binding" evidence=IEA

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NJS6 KPNA2 "Importin subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 176/363 (48%), Positives = 238/363 (65%)

Query:    14 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIK 73
             FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    +     +       +S   
Sbjct:    16 FKNKGKDTTEMRRRRIEVNVELRKAKKDDQMLKRRNVSTFPDDATSPLQENRSNQVSA-H 74

Query:    74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENP 131
              +V E+++G+ S+N ++++ AT++ARK+LS+E+ PPID +I+AG++P  V  L   D +P
Sbjct:    75 WSVEEIVKGVNSNNMELQLQATQAARKLLSREKQPPIDNIIQAGLIPKFVSFLSRADCSP 134

Query:   132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXX 191
               QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH++++EQA WALGNI     
Sbjct:   135 -IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHIHISEQAVWALGNIAGDGS 193

Query:   192 XXXXXXXXXXTMPQILALVQ-PNTPTT---FLRNIVWAISNLCRNKNPAPDFEKIKICLP 247
                        +  +L L+  P+  +    +LRN+ W +SNLCRNKNPAP  E I+  LP
Sbjct:   194 IYRDLVIKFGAIEPLLTLLAVPDLSSLASGYLRNVTWTLSNLCRNKNPAPPIEAIEQILP 253

Query:   248 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307
              L +L+H  D E L+D CWALSY++DG ND+I+ VV TG+VP+LV+LL   E  I+T +L
Sbjct:   254 TLVRLLHHDDHEVLADTCWALSYLTDGSNDRIEVVVKTGLVPQLVKLLGCGELPIVTPSL 313

Query:   308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 367
             R +GNI TG D QT  VI +G L     LLS  + NI KEAAWT+SNITAG   QI  V+
Sbjct:   314 RAIGNIVTGTDEQTQIVIDSGALSVFPSLLSHHKNNIQKEAAWTMSNITAGRQDQIQQVV 373

Query:   368 QEG 370
               G
Sbjct:   374 DHG 376

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=IEA

GO:0008139 "nuclear localization sequence binding" evidence=IEA

GO:0042826 "histone deacetylase binding" evidence=IEA

MGI|MGI:1100863 Kpna3 "karyopherin (importin) alpha 3" [Mus musculus (taxid:10090)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 178/392 (45%), Positives = 245/392 (62%)

Query:    10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
             R  SFKN G+  + MRR R E+ VELRK  +D+ L K+RN+ Q + +E+ +V        
Sbjct:    11 RIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDAD----F 66

Query:    70 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
                 +T+  +++   S NP +++ A ++ARK+LS +R+PPID+LI++G++PI V+ L+ D
Sbjct:    67 KAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERD 126

Query:   129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXX 188
             +NP+ QFEA WALTNIASGTS QT  V+ +NA+P FL+LL SPH N+ EQA WALGNI  
Sbjct:   127 DNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIG 186

Query:   189 XXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
                           +  +L+ + P+ P TFLRN+ W I NLCRNK+P P  E ++  LP 
Sbjct:   187 DGPQCRDYVISLGVVKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPA 246

Query:   249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
             L  LI+ TD+  L D  WALSY++DG N++IQ V+D+GVVP LV LL  +E  + TAALR
Sbjct:   247 LCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALR 306

Query:   309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
              VGNI TG D QT  V+    L     LLS  +  I KEA W +SNITAGN +Q+  VI 
Sbjct:   307 AVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVID 366

Query:   369 EGELNQMA-LLVEESGGLEKLEALQHHENETV 399
              G +  +   L +   G +K EA     N T+
Sbjct:   367 AGLIPMIIHQLAKGDFGTQK-EAAWAISNLTI 397

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

RGD|1311339 Kpna3 "karyopherin alpha 3" [Rattus norvegicus (taxid:10116)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 178/392 (45%), Positives = 245/392 (62%)

Query:    10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
             R  SFKN G+  + MRR R E+ VELRK  +D+ L K+RN+ Q + +E+ +V        
Sbjct:    11 RIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDAD----F 66

Query:    70 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
                 +T+  +++   S NP +++ A ++ARK+LS +R+PPID+LI++G++PI V+ L+ D
Sbjct:    67 KAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERD 126

Query:   129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXX 188
             +NP+ QFEA WALTNIASGTS QT  V+ +NA+P FL+LL SPH N+ EQA WALGNI  
Sbjct:   127 DNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIG 186

Query:   189 XXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
                           +  +L+ + P+ P TFLRN+ W I NLCRNK+P P  E ++  LP 
Sbjct:   187 DGPQCRDYVISLGVVKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPA 246

Query:   249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
             L  LI+ TD+  L D  WALSY++DG N++IQ V+D+GVVP LV LL  +E  + TAALR
Sbjct:   247 LCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALR 306

Query:   309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
              VGNI TG D QT  V+    L     LLS  +  I KEA W +SNITAGN +Q+  VI 
Sbjct:   307 AVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVID 366

Query:   369 EGELNQMA-LLVEESGGLEKLEALQHHENETV 399
              G +  +   L +   G +K EA     N T+
Sbjct:   367 AGLIPMIIHQLAKGDFGTQK-EAAWAISNLTI 397

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|O00505 KPNA3 "Importin subunit alpha-3" [Homo sapiens (taxid:9606)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 178/392 (45%), Positives = 245/392 (62%)

Query:    10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
             R  SFKN G+  + MRR R E+ VELRK  +D+ L K+RN+ Q + +E+ +V        
Sbjct:    11 RIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDAD----F 66

Query:    70 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
                 +T+  +++   S NP +++ A ++ARK+LS +R+PPID+LI++G++PI V+ L+ D
Sbjct:    67 KAQNVTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERD 126

Query:   129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXX 188
             +NP+ QFEA WALTNIASGTS QT  V+ +NA+P FL+LL SPH N+ EQA WALGNI  
Sbjct:   127 DNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIG 186

Query:   189 XXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
                           +  +L+ + P+ P TFLRN+ W I NLCRNK+P P  E ++  LP 
Sbjct:   187 DGPQCRDYVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPA 246

Query:   249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
             L  LI+ TD+  L D  WALSY++DG N++IQ V+D+GVVP LV LL  +E  + TAALR
Sbjct:   247 LCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKVQTAALR 306

Query:   309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
              VGNI TG D QT  V+    L     LLS  +  I KEA W +SNITAGN +Q+  VI 
Sbjct:   307 AVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVID 366

Query:   369 EGELNQMA-LLVEESGGLEKLEALQHHENETV 399
              G +  +   L +   G +K EA     N T+
Sbjct:   367 AGLIPMIIHQLAKGDFGTQK-EAAWAISNLTI 397

GO:0008565 "protein transporter activity" evidence=IEA

GO:0046718 "viral entry into host cell" evidence=IEA

GO:0075732 "viral penetration into host nucleus" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005643 "nuclear pore" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=TAS

GO:0008139 "nuclear localization sequence binding" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P52292 KPNA2 "Importin subunit alpha-2" [Homo sapiens (taxid:9606)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 173/363 (47%), Positives = 236/363 (65%)

Query:    14 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIK 73
             FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +  +           + 
Sbjct:    17 FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-DATSPLQENRNNQGTVN 75

Query:    74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENP 131
              +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D +P
Sbjct:    76 WSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSP 135

Query:   132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXX 191
               QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI     
Sbjct:   136 -IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 194

Query:   192 XXXXXXXXXXTMPQILALVQ-PNTPTT---FLRNIVWAISNLCRNKNPAPDFEKIKICLP 247
                        +  +LAL+  P+  +    +LRN+ W +SNLCRNKNPAP  + ++  LP
Sbjct:   195 VFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILP 254

Query:   248 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307
              L +L+H  D E L+D CWA+SY++DG N++I  VV TGVVP+LV+LL + E  I+T AL
Sbjct:   255 TLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPAL 314

Query:   308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 367
             R +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  V+
Sbjct:   315 RAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 374

Query:   368 QEG 370
               G
Sbjct:   375 NHG 377

GO:0008565 "protein transporter activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=IDA

GO:0008139 "nuclear localization sequence binding" evidence=IDA

GO:0000018 "regulation of DNA recombination" evidence=TAS

GO:0000085 "G2 phase of mitotic cell cycle" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0006259 "DNA metabolic process" evidence=TAS

GO:0000072 "M phase specific microtubule process" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0042826 "histone deacetylase binding" evidence=IPI

ZFIN|ZDB-GENE-030616-541 kpna3 "karyopherin (importin) alpha 3" [Danio rerio (taxid:7955)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 176/392 (44%), Positives = 244/392 (62%)

Query:    10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
             R  SFKN G+  + MRR R E+ VELRK  +D+ L K+RN+ Q + +E+ +V     +  
Sbjct:    11 RIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVD----SDF 66

Query:    70 SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-D 128
                 +T+  +++   S N  +++ A ++ARK+LS +R+PPID+LI+ G++PI V+ L+ D
Sbjct:    67 KGQNVTLDAILQNATSDNAVVQLSAVQAARKLLSSDRNPPIDDLIKCGILPILVKCLERD 126

Query:   129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXX 188
             +NP+ QFEA WALTNIASGTS QT  V+ +NA+P FL+LL SPH N+ EQA WALGNI  
Sbjct:   127 DNPSLQFEAAWALTNIASGTSAQTQAVVKSNAVPLFLRLLHSPHQNVCEQAVWALGNIIG 186

Query:   189 XXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
                           +  +L+ + P+ P TFLRN+ W I NLCRNK+P P  E ++  LP 
Sbjct:   187 DGPQCRDYVISLGVVKPLLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPA 246

Query:   249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
             L  LI+ TD+  L D  WALSY++DG N++IQ V+D+GVVP LV LL  +E  + TAALR
Sbjct:   247 LCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPYLVPLLSHQEVKVQTAALR 306

Query:   309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
              VGNI TG D QT  V+    L     LL+  +  I KEA W +SNITAGN +Q+  VI 
Sbjct:   307 AVGNIVTGTDEQTQVVLNCDVLTHFSTLLTHPKEKINKEAVWFLSNITAGNQQQVQAVID 366

Query:   369 EGELNQMA-LLVEESGGLEKLEALQHHENETV 399
              G +  +   L +   G +K EA     N T+
Sbjct:   367 AGLIPMIIHQLAKGDFGTQK-EAAWAISNLTI 397

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|Q6P6T9 Kpna2 "Importin subunit alpha" [Rattus norvegicus (taxid:10116)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 171/363 (47%), Positives = 236/363 (65%)

Query:    14 FKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIK 73
             FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+    + +  +           + 
Sbjct:    17 FKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPD-DATSPLQENRNNQGTVN 75

Query:    74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENP 131
              +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D +P
Sbjct:    76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 135

Query:   132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXX 191
               QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI     
Sbjct:   136 -IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 194

Query:   192 XXXXXXXXXXTMPQILALVQ-PNTPTT---FLRNIVWAISNLCRNKNPAPDFEKIKICLP 247
                        +  +LAL+  P+  +    +LRN+ W +SNLCRNKNPAP  + ++  LP
Sbjct:   195 VFRDLVIKHGAIDPLLALLAVPDLSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 254

Query:   248 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307
              L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T AL
Sbjct:   255 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314

Query:   308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 367
             R +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  V+
Sbjct:   315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 374

Query:   368 QEG 370
               G
Sbjct:   375 NHG 377

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52295	IMA_DROME	No assigned EC number	0.4169	0.9704	0.8180	yes	N/A
O35344	IMA3_MOUSE	No assigned EC number	0.3941	0.9704	0.8195	yes	N/A
O00505	IMA3_HUMAN	No assigned EC number	0.3941	0.9704	0.8195	yes	N/A
Q02821	IMA1_YEAST	No assigned EC number	0.45	0.8886	0.7214	yes	N/A
O94374	IMA2_SCHPO	No assigned EC number	0.4422	0.8795	0.7179	yes	N/A
Q19969	IMA3_CAEEL	No assigned EC number	0.4378	0.9	0.7704	yes	N/A
Q76P29	IMAB_DICDI	No assigned EC number	0.4432	0.7772	0.6627	yes	N/A
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.3615	0.9522	0.7846	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	440
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-121
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-30
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-29
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	3e-19
pfam01749	97	pfam01749, IBB, Importin beta binding domain	4e-17
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	2e-15
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	5e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-09
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-07
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	3e-05
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	4e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.001

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  363 bits (934), Expect = e-121
 Identities = 178/383 (46%), Positives = 242/383 (63%), Gaps = 10/383 (2%)

Query: 1   MSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEE 59
            + +     R+ +FK  G+ S DE+RR+R E  VELRK  +++ L KRRN+  + E  E 
Sbjct: 1   STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAES 60

Query: 60  NVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVV 119
           +   +E          +P++ + + S + + ++ A    RK+LSKE  PPI  +I+AGVV
Sbjct: 61  SFIPME----QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVV 116

Query: 120 PICVELLDDENPNT-QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 178
           P  VE +D+   +  QFEA WALTNIASGT++QT  V++A A+P F+QLLSS   ++ EQ
Sbjct: 117 PRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQ 176

Query: 179 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT-TFLRNIVWAISNLCRNKNPAP 237
           A WALGNIAGD    RD +L  G +  +L L+  +    + LRN  W +SNLCR KNP P
Sbjct: 177 AVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP 236

Query: 238 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 297
           D+  I   LP+L +LI++ D E L D CWA+SY+SDG N+KIQAV+D G+  RLVELL  
Sbjct: 237 DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH 296

Query: 298 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
           E   I T ALR+VGNI TG+D QT  +I  G L+  + LLSS + NI KEA WTISNITA
Sbjct: 297 ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356

Query: 358 GNSRQIDHVIQEGELNQMALLVE 380
           GN+ QI  VI   + N +  L+ 
Sbjct: 357 GNTEQIQAVI---DANLIPPLIH 376

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  111 bits (280), Expect = 8e-30
 Identities = 38/121 (31%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 111 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
           + +I+AG +P  V LL   + N Q EA WAL+N+++G ++    V+ A  +P  +QLL S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230
               + + A WAL N+A      + ++L  G +P+++ L+  +      +N   A+SNL 
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119

Query: 231 R 231
            
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  110 bits (277), Expect = 3e-29
 Identities = 46/113 (40%), Positives = 69/113 (61%)

Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
            LP L  L+ ++D     +  WALS +S G+ND IQAVV+ G +P LV+LL SE+  ++ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
           AAL  + N+A G +     V++AGG+ K+  LL SS  +I K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 39/129 (30%), Positives = 61/129 (47%), Gaps = 13/129 (10%)

Query: 280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 339
           +AV+  G +P LV LL S +  +   A   + N++ GN+     V++AGGL  + +LL S
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 340 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETV 399
               +VK A W + N+ AG                  L+V E+GG+ KL  L    NE +
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDN-------------KLIVLEAGGVPKLVNLLDSSNEDI 107

Query: 400 YQKCYKIIS 408
            +     +S
Sbjct: 108 QKNATGALS 116

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 74  MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT 133
             +P ++  + SS+  ++  A  +    LS   +  I  ++EAG +P  V+LL  E+   
Sbjct: 7   GGLPALVSLLSSSDENVQREAAWALSN-LSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
              A WAL N+A+G  +  + V+ A  +PK + LL S + ++ + AT AL N+A
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score = 76.3 bits (188), Expect = 4e-17
 Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-DQLDEIEEENVTVIEPTC 68
          R+ S+KN G+  +EMRR+R E+ VELRK  +++QL KRRN+    ++  E    +   + 
Sbjct: 9  RRKSYKNKGRDAEEMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSD 68

Query: 69 MSPIKMTVPEMIEGMKSSNP 88
             + + +P M++G+ S +P
Sbjct: 69 ADQLSLELPVMVQGVNSDDP 88

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 234 NPAPDFEKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 292
           +  P  ++    LP L Q + + D+E  L  +      +S   +  IQ V+D GVVPR V
Sbjct: 61  SFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFV 120

Query: 293 ELLDSEETTILT-AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 351
           E +D  +  +L   A   + NIA+G   QT  V+ AG +    +LLSS+  ++ ++A W 
Sbjct: 121 EFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWA 180

Query: 352 ISNITAGNSRQIDHVIQEGELNQMALLVEES 382
           + NI   +    D+V+Q G L  +  L+  S
Sbjct: 181 LGNIAGDSEGCRDYVLQCGALEPLLGLLLSS 211

Length = 526

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.0 bits (131), Expect = 5e-10
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
           + E    VI A A+P  +QLLSSP   + E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 52.5 bits (127), Expect = 2e-09
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 108 PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146
                +IEAG VP  V+LL   +   Q EA WAL+N+A+
Sbjct: 3   ENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
             E    V++A  +P  ++LL S    + ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.2 bits (116), Expect = 7e-08
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
           +      VI+AG +  + +LLSS    + +EAAW +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 106 RHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146
                  +++AG +P  VELL  E+     EA WAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 275 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
             +  QAV++ G VP LV+LL S +  +   A   + N+A 
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 357
           +D     V+ AGGL  + +LL S    +VKEAAW +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.1 bits (108), Expect = 8e-07
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 275 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
            ++  QAVVD G +P LVELL SE+  ++  A   + N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 21/91 (23%)

Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 169
           ++ L+EA        LL D +P  +  A  AL  +            +  A+P  L+LL 
Sbjct: 1   LEALLEA--------LLSDPDPEVRAAAARALGELG-----------DPEALPALLELLK 41

Query: 170 SPHLNLAEQATWALGNIAGDGARARDLLLGL 200
            P   +   A  ALG +      A   LL L
Sbjct: 42  DPDPEVRRAAAEALGKLGDP--EALPALLEL 70

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
              +  A  AL  +A G  E  +       +P  L LL      + E A WALG I
Sbjct: 1   WEVREAAALALGALAGGGPE-LLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS 146
              ++EAG VP  V LLD  N + Q  AT AL+N+AS
Sbjct: 84  KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISD 273
            +P L QL+ + D E   +  WALS ++ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	440
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166|consensus	514		100.0
KOG0166|consensus	514		100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224|consensus	550		99.95
KOG4224|consensus	550		99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.89
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.83
KOG4199|consensus	461		99.77
KOG1048|consensus	717		99.75
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.71
PRK09687	280	putative lyase; Provisional	99.68
KOG4199|consensus	461		99.68
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.67
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.65
KOG2122|consensus	2195		99.65
KOG2122|consensus	2195		99.65
KOG0168|consensus	1051		99.64
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.62
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.6
KOG1048|consensus	717		99.57
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.56
PRK09687	280	putative lyase; Provisional	99.55
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.51
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.47
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.47
KOG4500|consensus	604		99.42
KOG4500|consensus	604		99.42
KOG1222|consensus	791		99.42
KOG1293|consensus	678		99.41
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.39
PTZ00429	746	beta-adaptin; Provisional	99.25
KOG2171|consensus	1075		99.25
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.23
KOG2023|consensus	885		99.22
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.2
KOG2759|consensus	442		99.17
KOG2160|consensus	342		99.17
KOG2759|consensus	442		99.17
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.17
PTZ00429	746	beta-adaptin; Provisional	99.16
KOG1222|consensus	791		99.12
KOG2160|consensus	342		99.1
KOG2171|consensus	1075		99.08
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.06
KOG1293|consensus	678		99.05
KOG0168|consensus	1051		99.03
KOG1241|consensus	859		99.02
KOG0946|consensus	970		99.0
KOG2023|consensus	885		98.99
KOG1517|consensus	1387		98.92
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.9
KOG3678|consensus	832		98.9
KOG0946|consensus	970		98.85
KOG3678|consensus	832		98.8
KOG0213|consensus	1172		98.73
KOG1059|consensus	877		98.69
KOG1241|consensus	859		98.68
KOG2973|consensus	353		98.66
KOG0213|consensus	1172		98.64
KOG1517|consensus	1387		98.6
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.59
COG5369	743	Uncharacterized conserved protein [Function unknow	98.59
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.55
KOG4413|consensus	524		98.51
TIGR02270	410	conserved hypothetical protein. Members are found	98.5
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.45
KOG2973|consensus	353		98.43
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.42
TIGR02270	410	conserved hypothetical protein. Members are found	98.42
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.41
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.39
KOG1062|consensus	866		98.38
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.38
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.36
COG5369	743	Uncharacterized conserved protein [Function unknow	98.36
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.35
KOG1789|consensus	2235		98.34
KOG1061|consensus	734		98.28
KOG1059|consensus	877		98.28
KOG1062|consensus	866		98.27
KOG1061|consensus	734		98.26
KOG1824|consensus	1233		98.26
KOG4646|consensus	173		98.24
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.24
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.21
KOG1060|consensus	968		98.18
PF05536	543	Neurochondrin: Neurochondrin	98.15
KOG1242|consensus	569		98.12
PF05536	543	Neurochondrin: Neurochondrin	98.12
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.11
KOG1824|consensus	1233		98.09
KOG1240|consensus	1431		98.08
KOG4646|consensus	173		98.07
KOG0212|consensus	675		98.07
KOG1242|consensus	569		98.04
KOG4413|consensus	524		98.03
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.02
KOG2734|consensus	536		98.02
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.02
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.02
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.99
KOG0212|consensus	675		97.96
KOG2259|consensus	823		97.96
KOG2259|consensus	823		97.96
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.94
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.93
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.92
KOG1240|consensus	1431		97.87
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.83
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.82
KOG2062|consensus	929		97.81
KOG1077|consensus	938		97.81
KOG1060|consensus	968		97.8
KOG1077|consensus	938		97.76
KOG1789|consensus	2235		97.73
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.71
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.71
KOG2734|consensus	536		97.7
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.67
KOG0567|consensus	289		97.66
KOG0567|consensus	289		97.63
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.63
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.62
KOG1058|consensus	948		97.47
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.37
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.33
KOG0211|consensus	759		97.31
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.3
KOG1967|consensus	1030		97.29
KOG0211|consensus	759		97.29
PF05004	309	IFRD: Interferon-related developmental regulator (	97.27
KOG4151|consensus	748		97.24
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.21
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.18
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.11
KOG1248|consensus	1176		97.09
KOG2274|consensus	1005		97.08
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.07
KOG1943|consensus	1133		97.06
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.05
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.04
KOG1991|consensus	1010		97.02
KOG0915|consensus	1702		97.01
KOG0414|consensus	1251		97.01
KOG1248|consensus	1176		97.01
KOG1078|consensus	865		96.97
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.95
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.91
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.91
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.91
KOG4151|consensus	748		96.9
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.89
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.86
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.77
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.75
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.7
KOG0915|consensus	1702		96.69
KOG2274|consensus	1005		96.66
KOG1058|consensus	948		96.64
KOG4653|consensus	982		96.64
KOG1078|consensus	865		96.58
KOG4535|consensus	728		96.58
KOG1943|consensus	1133		96.54
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.51
KOG4653|consensus	982		96.49
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.47
KOG3036|consensus	293		96.46
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.42
KOG1991|consensus	1010		96.39
PF05004	309	IFRD: Interferon-related developmental regulator (	96.38
KOG0414|consensus	1251		96.36
KOG4535|consensus	728		96.29
KOG1820|consensus	815		96.28
KOG3665|consensus	699		96.27
KOG2956|consensus	516		96.26
KOG2062|consensus	929		96.25
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.24
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.21
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.17
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.07
KOG2032|consensus	533		96.05
KOG2956|consensus	516		95.95
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.92
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.79
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.72
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.68
KOG3036|consensus	293		95.66
KOG1243|consensus	690		95.66
KOG1243|consensus	690		95.63
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.56
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.55
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.52
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.51
KOG1566|consensus	342		95.49
KOG1020|consensus	1692		95.48
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.26
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.25
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.15
PRK14707	2710	hypothetical protein; Provisional	95.07
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.04
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.0
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.94
KOG1967|consensus	1030		94.8
KOG2025|consensus	892		94.58
COG5116	926	RPN2 26S proteasome regulatory complex component [	94.51
KOG2137|consensus	700		94.48
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.45
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	94.26
KOG2137|consensus	700		94.23
PRK14707	2710	hypothetical protein; Provisional	94.19
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.15
KOG2032|consensus	533		94.12
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.12
KOG2611|consensus	698		93.99
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.95
COG5098	1128	Chromosome condensation complex Condensin, subunit	93.94
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.83
KOG2025|consensus	892		93.77
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	93.68
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.68
KOG2611|consensus	698		93.67
KOG1832|consensus	1516		93.66
KOG1020|consensus	1692		93.56
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.44
KOG3665|consensus	699		93.31
KOG1820|consensus	815		93.0
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	92.84
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	92.78
KOG2999|consensus	713		92.73
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	92.68
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	92.39
KOG1566|consensus	342		92.23
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.23
KOG1949|consensus	1005		92.05
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	91.86
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	91.84
KOG2933|consensus	334		91.74
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.65
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.53
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.36
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	91.18
KOG0891|consensus	2341		91.14
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.09
PF07814	361	WAPL: Wings apart-like protein regulation of heter	91.09
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	90.99
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	90.91
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	90.79
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	90.52
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	90.46
PF07814	361	WAPL: Wings apart-like protein regulation of heter	89.47
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.4
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.27
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	89.23
KOG2999|consensus	713		88.88
KOG1949|consensus	1005		88.88
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	88.86
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	88.82
KOG2005|consensus	878		88.73
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	88.56
KOG2933|consensus	334		88.5
KOG4464|consensus	532		88.24
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	88.13
KOG1848|consensus	1610		87.61
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	86.65
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	86.4
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.36
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	86.23
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.2
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	85.86
KOG0413|consensus	1529		85.77
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	85.71
cd03561	133	VHS VHS domain family; The VHS domain is present i	85.21
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.15
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	84.9
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	84.36
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	84.35
PF11538	40	Snurportin1: Snurportin1; InterPro: IPR024721 Snur	84.17
KOG3132|consensus	325		84.07
KOG1788|consensus	2799		83.98
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	83.7
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	83.03
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.86
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	82.83
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	82.77
cd03561	133	VHS VHS domain family; The VHS domain is present i	82.27
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	81.68
KOG1822|consensus	2067		81.47
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.04
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	80.88
KOG2005|consensus	878		80.31

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.3e-84  Score=569.56  Aligned_cols=433  Identities=45%  Similarity=0.736  Sum_probs=394.1

Q ss_pred             CCcchhhHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHhhhhHHHHhhccccc-cccchhhhccccCCCCCCcccCCHHH
Q psy9169           1 MSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQ-LDEIEEENVTVIEPTCMSPIKMTVPE   78 (440)
Q Consensus         1 ~~~~~~~~~r~~~~k~~~~-~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~   78 (440)
                      |..+|.|+.|+.+||.+|+ .++|+||+|++.++||||+||+|.|.||||+.. +++......    ++.|. ...-+|.
T Consensus         1 ~~srf~p~~Rr~~fk~Kg~f~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i----~meqq-~~~elp~   75 (526)
T COG5064           1 STSRFVPEARRYNFKGKGRFSADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFI----PMEQQ-FYSELPQ   75 (526)
T ss_pred             CCcccchHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccC----chhHH-hhhhhHH
Confidence            4678999999999999997 589999999999999999999999999999832 222111100    11111 2235799


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169          79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN  157 (440)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~  157 (440)
                      |.+.|.|+|.+.|+.|+..+|+++|.+.+||++.++++|++|+|++++ .....-++++|+|+|+|+++++..++..+++
T Consensus        76 lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd  155 (526)
T COG5064          76 LTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVD  155 (526)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEe
Confidence            999999999999999999999999999999999999999999999999 7777889999999999999999999999999


Q ss_pred             cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC-cHHHHHHHHHHHHhhhhCCCCC
Q psy9169         158 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPA  236 (440)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~  236 (440)
                      +|++|.++++|.+++.+++++++|+|||++++++.+|+.+++.|++++++.++.++. +.+++++++|+|+|||++++|+
T Consensus       156 ~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~  235 (526)
T COG5064         156 AGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP  235 (526)
T ss_pred             CCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence            999999999999999999999999999999999999999999999999999998655 3699999999999999999999


Q ss_pred             CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC
Q psy9169         237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG  316 (440)
Q Consensus       237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~  316 (440)
                      +........+|.|.+++++.|+++..+|||+|+||++++.+.++.+++.|+.++|+++|.|++..++.+|++.+|||++|
T Consensus       236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG  315 (526)
T COG5064         236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG  315 (526)
T ss_pred             CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh----------------------------
Q psy9169         317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ----------------------------  368 (440)
Q Consensus       317 ~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~----------------------------  368 (440)
                      ++.+++.++++|+++.+..+|+++...+|++|||+++||++|+.+|++++++                            
T Consensus       316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisN  395 (526)
T COG5064         316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISN  395 (526)
T ss_pred             CccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999                            


Q ss_pred             ------------------------------------------------cC---------cchHHHHHHHHcCcHHHHHHH
Q psy9169         369 ------------------------------------------------EG---------ELNQMALLVEESGGLEKLEAL  391 (440)
Q Consensus       369 ------------------------------------------------~~---------~~~~~~~~l~~~g~l~~l~~L  391 (440)
                                                                      .|         ..+.|..++++.||+++|..+
T Consensus       396 atsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~  475 (526)
T COG5064         396 ATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGL  475 (526)
T ss_pred             hhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHh
Confidence                                                            11         156789999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHHhhCCCCccccc----cCCCccccCCCCCCCCCCCC
Q psy9169         392 QHHENETVYQKCYKIISMAFNDSAENSI----ENGDTIEFNPQPVNTVNGFN  439 (440)
Q Consensus       392 ~~~~~~~v~~~a~~il~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  439 (440)
                      |.+.|.+||.+|++||++||++|+.-|+    ..++.|.|+++.. ++|.||
T Consensus       476 Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~~~-~qg~f~  526 (526)
T COG5064         476 QDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVN-QQGNFN  526 (526)
T ss_pred             hhccccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCCcc-ccCCCC
Confidence            9999999999999999999987754333    5678999998764 665554

>KOG0166|consensus

Probab=100.00  E-value=1.4e-79  Score=580.57  Aligned_cols=428  Identities=49%  Similarity=0.810  Sum_probs=388.1

Q ss_pred             hhhHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccchhhhccccCCCCCCcccCCHHHHHHHhc
Q psy9169           5 VAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMK   84 (440)
Q Consensus         5 ~~~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~   84 (440)
                      .-+..|.++||++++|++|+||||++..+|+||+||+|.+.|||+....... +...     +.........+.++..+.
T Consensus         3 ~~~~~~~~~~k~~~~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~   76 (514)
T KOG0166|consen    3 GSSNNRRRRYKNKGVDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELML-DELL-----SDSQSQASNLELMLAALY   76 (514)
T ss_pred             chhHHHHHHHhhccccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhccc-cccc-----chhHHHhhhhHHHHHHHh
Confidence            3456889999999999999999999999999999999999999993211110 0000     000011233788899999


Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHH
Q psy9169          85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPK  163 (440)
Q Consensus        85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~  163 (440)
                      |+++..+..++..++++++...+|+++.++.+|++|.||++| .+.++.+|++|+|+|+|||+++++++..+++.|++|.
T Consensus        77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~  156 (514)
T KOG0166|consen   77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI  156 (514)
T ss_pred             CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence            999999999999999999999889999999999999999999 6778999999999999999999999999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHh
Q psy9169         164 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK  243 (440)
Q Consensus       164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  243 (440)
                      |+.++.+++..++++|+|+|||++++++.+|+.++..|++++|+.++.......++++++|+|+|||++++|.+.+..+.
T Consensus       157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~  236 (514)
T KOG0166|consen  157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA  236 (514)
T ss_pred             HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999988867999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHH
Q psy9169         244 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC  323 (440)
Q Consensus       244 ~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~  323 (440)
                      .++|.|..++++.|+++..++||+++||++++.+.++.+++.|++++|+.+|.+++..++.+|++++|||++|++.+++.
T Consensus       237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~  316 (514)
T KOG0166|consen  237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV  316 (514)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCChHHHHHHhh----------------------------------
Q psy9169         324 VIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQ----------------------------------  368 (440)
Q Consensus       324 l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~----------------------------------  368 (440)
                      ++++|+++.|..++. ++...++++|||+|+||++|+++|++++++                                  
T Consensus       317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~  396 (514)
T KOG0166|consen  317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT  396 (514)
T ss_pred             HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC
Confidence            999999999999999 556679999999999999999999999999                                  


Q ss_pred             ----------------------------------------cCc---c---hHHHHHHHHcCcHHHHHHHhcCCcHHHHHH
Q psy9169         369 ----------------------------------------EGE---L---NQMALLVEESGGLEKLEALQHHENETVYQK  402 (440)
Q Consensus       369 ----------------------------------------~~~---~---~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~  402 (440)
                                                              .|+   .   +.++.+|+++||+++|+.||.|.|.+||++
T Consensus       397 ~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~  476 (514)
T KOG0166|consen  397 PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKK  476 (514)
T ss_pred             HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHH
Confidence                                                    111   1   889999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCccccc--cCCCccccCCCCCCCCCCCCC
Q psy9169         403 CYKIISMAFNDSAENSI--ENGDTIEFNPQPVNTVNGFNF  440 (440)
Q Consensus       403 a~~il~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  440 (440)
                      |++||++||.+|++++.  .+.++|.|+.+ . |.++|||
T Consensus       477 A~~II~~yf~~e~~~~~~~~~~~~~~~~~~-~-~~~~f~f  514 (514)
T KOG0166|consen  477 AYKIIDTYFSEEDDEDDQQPTTSQFTFQVQ-A-PDGGFNF  514 (514)
T ss_pred             HHHHHHHhcCCCcccccccccccccccCCC-C-CCCCCCC
Confidence            99999999998866654  22337787777 5 8899999

>KOG0166|consensus

Probab=100.00  E-value=1.2e-41  Score=322.70  Aligned_cols=289  Identities=27%  Similarity=0.450  Sum_probs=265.1

Q ss_pred             cCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          73 KMTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ...+|.+|+.|. ..++.+|++|+|+|.+++++.. .....++++|++|.|+.++.+++..++.+|+|+|+|++.+++.+
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgts-e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTS-EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCch-hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence            478999999997 5569999999999999998876 55788999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         152 TMTVINANAIPKFLQLLSSPHL-NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      +..+++.|+++.|+.++..+.. .+..++.|+|+|+|.+....-.......++|.|..++.+.+ .+++..+||++++|+
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLs  265 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD-EEVLTDACWALSYLT  265 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHh
Confidence            9999999999999999998874 78899999999999765222233334568999999999888 899999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRT  309 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~  309 (440)
                      .+.++..++....+++|.|+++|.+.++.++..|+.+++|++.+++...+.+++.|++|.|..+|. ++...++.+|||+
T Consensus       266 dg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~  345 (514)
T KOG0166|consen  266 DGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWT  345 (514)
T ss_pred             cCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHH
Confidence            999888999999999999999999999999999999999999999999999999999999999998 5666799999999


Q ss_pred             HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHHH
Q psy9169         310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQI  363 (440)
Q Consensus       310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~  363 (440)
                      |+||+.|+.++++.++++|++|.|+.+|++.+.++|+||+|+++|++.+ +++|+
T Consensus       346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi  400 (514)
T KOG0166|consen  346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQI  400 (514)
T ss_pred             HHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHH
Confidence            9999999999999999999999999999999999999999999999974 55554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.9e-41  Score=296.77  Aligned_cols=284  Identities=26%  Similarity=0.373  Sum_probs=260.6

Q ss_pred             cCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          73 KMTVPEMIEGM-KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L-~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ...+|.+++++ .+.....+++|+|+|.++.|+.. .....++++|++|.|+.+|.+.+.+++.+++|+|+|+|.+++.+
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt-~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT-QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc-cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence            46789999999 56778899999999999998876 45678899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169         152 TMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL  229 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l  229 (440)
                      ++.+++.|++.+++.+|.+..  ..+...+.|+|+|+|......-+.-.-...+|.|.+++...+ ++++..|||++++|
T Consensus       192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D-~evlvDA~WAiSYl  270 (526)
T COG5064         192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRD-PEVLVDACWAISYL  270 (526)
T ss_pred             HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHh
Confidence            999999999999999998765  588899999999999653322244444567999999998877 89999999999999


Q ss_pred             hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169         230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT  309 (440)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~  309 (440)
                      +.++..........++.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|.++...++.+|||+
T Consensus       271 sDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWT  350 (526)
T COG5064         271 SDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWT  350 (526)
T ss_pred             ccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhhee
Confidence            99988888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      |+||.+|+.++++.+++++++|+|+++|.+.+..++++|||+++|.+.|
T Consensus       351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg  399 (526)
T COG5064         351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG  399 (526)
T ss_pred             ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999999999999999999999999976

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=312.77  Aligned_cols=327  Identities=19%  Similarity=0.219  Sum_probs=279.5

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-CCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ...++.++.+|.++++..|..|++++.++++... .++..+++.|++|.|+++|. .+++.+|++|+|+|+||+++++++
T Consensus       188 aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~  266 (2102)
T PLN03200        188 AGGVDILVKLLSSGNSDAQANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA  266 (2102)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence            4689999999999999999999999987876544 46889999999999999995 456799999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCCch-----------hHHHH---HhcCChHHHHh
Q psy9169         152 TMTVINANAIPKFLQLLSSPH---------LNLAEQATWALGNIAGDGAR-----------ARDLL---LGLGTMPQILA  208 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~---------~~v~~~a~~~L~nl~~~~~~-----------~r~~i---~~~g~i~~L~~  208 (440)
                      +..+++.|++|.|+.++.+++         ..++++|+|+|+|||++.+.           .|+..   ...|++++++.
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~  346 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM  346 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence            999999999999999998655         34699999999999987543           22222   35688888888


Q ss_pred             hhCCCCcHHHH---HHHHHHHHhhhhCCCCCCCHHH-------------------HhhHHHHHHHhhcCCCHHHHHHHHH
Q psy9169         209 LVQPNTPTTFL---RNIVWAISNLCRNKNPAPDFEK-------------------IKICLPLLNQLIHTTDVETLSDICW  266 (440)
Q Consensus       209 ll~~~~~~~~~---~~a~~~L~~l~~~~~~~~~~~~-------------------~~~~~~~L~~ll~~~d~~i~~~a~~  266 (440)
                      ++..+......   ..++|+|.+|++++++......                   ..++++.|+.++...+.+++.+++|
T Consensus       347 l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~  426 (2102)
T PLN03200        347 VFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR  426 (2102)
T ss_pred             hcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence            88765422212   3678999999998865542211                   1245678888999889999999999


Q ss_pred             HHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHH
Q psy9169         267 ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVK  346 (440)
Q Consensus       267 ~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~  346 (440)
                      +|.+++.++.+.++.+.+.|++|.|+++|.+++..++..|+++|+||+.++++++..++++|++|.|+++|.++++.+++
T Consensus       427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe  506 (2102)
T PLN03200        427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE  506 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         347 EAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                      +|+|+|+|++.++.+             ....+.+.|+++.|..++.++++++++.|.++|.++...
T Consensus       507 eAawAL~NLa~~~~q-------------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        507 DSATVLWNLCCHSED-------------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHHHHHhCCcHH-------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhc
Confidence            999999999986433             255667889999999999999999999999999888643

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=296.87  Aligned_cols=339  Identities=17%  Similarity=0.192  Sum_probs=292.8

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.|+.+|.+.+.+.|..++++|..++..+. ..++.+++.|++|.|+++|.++++.+|..|+|+|++++.++++++.
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~-e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~  482 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGKG-GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW  482 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            467889999999999999999999998865443 5688999999999999999888999999999999999999899999


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      .+++.|++|.|+++|.+++.+++++|+|+|+|++.+++..+..+...|++++|+++|.+++ ...+..++|+|.+|..+.
T Consensus       483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~nLi~~~  561 (2102)
T PLN03200        483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTKLVRTA  561 (2102)
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999988888888888999999999999886 899999999999997543


Q ss_pred             CCCC---------------------------------C----HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         234 NPAP---------------------------------D----FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       234 ~~~~---------------------------------~----~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                      +...                                 +    .....+++|.|++++.++++.++..|+|+|.+++.+..
T Consensus       562 d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~  641 (2102)
T PLN03200        562 DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ  641 (2102)
T ss_pred             chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh
Confidence            2110                                 0    00124689999999999999999999999999999999


Q ss_pred             hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169         277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI  355 (440)
Q Consensus       277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl  355 (440)
                      +..+.++..|++++++.+|.+.+.+++..|+|+|+|++.+. ..+...+++.|++++|+++|.+++..++..|+.+|.|+
T Consensus       642 d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanL  721 (2102)
T PLN03200        642 DLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL  721 (2102)
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence            98899999999999999999999999999999999999644 44566788999999999999988888888888888888


Q ss_pred             hcCChHHHHHHhh-------------------------------------------------------------------
Q psy9169         356 TAGNSRQIDHVIQ-------------------------------------------------------------------  368 (440)
Q Consensus       356 ~~~~~~~~~~~i~-------------------------------------------------------------------  368 (440)
                      +..... ...+..                                                                   
T Consensus       722 l~~~e~-~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~  800 (2102)
T PLN03200        722 LSDPEV-AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATS  800 (2102)
T ss_pred             HcCchH-HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHH
Confidence            865432 222221                                                                   


Q ss_pred             -----------cC-----cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         369 -----------EG-----ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       369 -----------~~-----~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                                 .+     ..+++..++|..+++++|...+.|++|.++++|.++|+++..|.+
T Consensus       801 ~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~  863 (2102)
T PLN03200        801 EALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP  863 (2102)
T ss_pred             HHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence                       00     134677789999999999888899999999999999999998765

>KOG4224|consensus

Probab=99.95  E-value=3.3e-27  Score=210.60  Aligned_cols=323  Identities=20%  Similarity=0.241  Sum_probs=285.4

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      -.++..|+..+.++..++|..++.++.+++..+.  ....+...|++.++..+-++.+..+|..+..+|.|++ ++.+++
T Consensus       125 l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~--nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnR  201 (550)
T KOG4224|consen  125 LLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS--NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENR  201 (550)
T ss_pred             ccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc--chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhh
Confidence            3678889988899999999999999999988754  5678889999999999669999999999999999998 458889


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLG--TMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g--~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      +.++..|++|.|+.++++.+..+++.|+.+|+||+-+ ...|+.+.+.+  .++.|++++.+++ +.++..+..+|.+|+
T Consensus       202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s-~kvkcqA~lALrnla  279 (550)
T KOG4224|consen  202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGS-DKVKCQAGLALRNLA  279 (550)
T ss_pred             hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCC-hHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999988 56778888877  9999999999888 899999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC-hhHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALRT  309 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~-~~v~~~al~~  309 (440)
                      ... .........+.+|.++++++++..........++.+++-++-.. ..++++|.+.+||.+|...+ .+++.+|..+
T Consensus       280 sdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvst  357 (550)
T KOG4224|consen  280 SDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVST  357 (550)
T ss_pred             ccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHH
Confidence            886 33344456899999999999988888888999999998765543 56788999999999998765 5699999999


Q ss_pred             HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHH
Q psy9169         310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLE  389 (440)
Q Consensus       310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~  389 (440)
                      |.|++.++......+.++|+++.+..++.++.-.++.+...+++.++-....              ...+-+.|.++.|.
T Consensus       358 LrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~--------------k~~lld~gi~~iLI  423 (550)
T KOG4224|consen  358 LRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND--------------KEALLDSGIIPILI  423 (550)
T ss_pred             HHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc--------------HHHHhhcCCcceee
Confidence            9999999999999999999999999999998889999998888888865432              56778899999999


Q ss_pred             HHhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169         390 ALQHHENETVYQKCYKIISMAFNDSAE  416 (440)
Q Consensus       390 ~L~~~~~~~v~~~a~~il~~~~~~~~~  416 (440)
                      .+..+.+.+|+..|..+|-+|.++.++
T Consensus       424 p~t~s~s~Ev~gNaAaAL~Nlss~v~~  450 (550)
T KOG4224|consen  424 PWTGSESEEVRGNAAAALINLSSDVEH  450 (550)
T ss_pred             cccCccchhhcccHHHHHHhhhhhhHH
Confidence            999999999999999999999876554

>KOG4224|consensus

Probab=99.95  E-value=5.6e-26  Score=202.80  Aligned_cols=288  Identities=19%  Similarity=0.267  Sum_probs=250.9

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ...+..+.++-++.|..+|..++.++.++....  .+++.++.+|++|.|+.++++.++.+|+.++.+++||+.+ ...+
T Consensus       166 sGaL~pltrLakskdirvqrnatgaLlnmThs~--EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~R  242 (550)
T KOG4224|consen  166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHSR--ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRAR  242 (550)
T ss_pred             ccchhhhHhhcccchhhHHHHHHHHHHHhhhhh--hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHH
Confidence            467888899888999999999999999985433  4678999999999999999999999999999999999976 6678


Q ss_pred             HHHHhcC--CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINAN--AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      +.+.+.+  .+|.|+.++.+++++++.+|..+|+|++.+. .+...+.+.|.+|.++++++++. ....-....|+.|++
T Consensus       243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrnis  320 (550)
T KOG4224|consen  243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPM-GPLILASVACIRNIS  320 (550)
T ss_pred             HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhhcc
Confidence            8888888  9999999999999999999999999999995 45577888999999999998777 566677778999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCC-HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT  309 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d-~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~  309 (440)
                      -++ -........|++.+|+.+|...| ++++..|..+|.+|+..+......+.++|++|.+..++.+...+++.....|
T Consensus       321 ihp-lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac  399 (550)
T KOG4224|consen  321 IHP-LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISAC  399 (550)
T ss_pred             ccc-CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHH
Confidence            886 44455567899999999998755 5699999999999998888888999999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh
Q psy9169         310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ  368 (440)
Q Consensus       310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~  368 (440)
                      ++.++..+ ..+..+.+.|+++.|+.++.+.+.+++..|+-+|.|++..- ++-..+++
T Consensus       400 ~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v-~~YarviE  456 (550)
T KOG4224|consen  400 IAQLALND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV-EHYARVIE  456 (550)
T ss_pred             HHHHHhcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh-HHHHHHHH
Confidence            99988755 46778999999999999999999999999999999998753 33344444

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.89  E-value=3.2e-20  Score=186.79  Aligned_cols=321  Identities=19%  Similarity=0.264  Sum_probs=257.6

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ...++.|++.|.+++.++...++..|.++.-..  .+...+.+.|+++.|+.++.+++.+++..++++|.|++.+ ++.+
T Consensus       289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R  365 (708)
T PF05804_consen  289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFK--ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELR  365 (708)
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHH
Confidence            467899999999999999999999999885433  4578999999999999999999999999999999999966 7789


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH-----
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS-----  227 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~-----  227 (440)
                      ..++..|++|.|+.+|.+++  .+..++.+|.+++.+ +..|..+...+++|.+++++....+..+...+++++.     
T Consensus       366 ~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~  442 (708)
T PF05804_consen  366 SQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN  442 (708)
T ss_pred             HHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence            99999999999999998764  556799999999987 5688888888999999998876544444444444444     


Q ss_pred             ---------------------------------hhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhcc
Q psy9169         228 ---------------------------------NLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISD  273 (440)
Q Consensus       228 ---------------------------------~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~  273 (440)
                                                       |++.++.+  ......+.+..|+.++.. ++++....++++|+||+.
T Consensus       443 ~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~--~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~  520 (708)
T PF05804_consen  443 KRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGP--LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTI  520 (708)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence                                             44444311  111123345555555544 467899999999999997


Q ss_pred             CChhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHH
Q psy9169         274 GHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAA  349 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~  349 (440)
                      .+.+..+.+-+.+++|.|..+|..+  .+++..+++.++|.++. ++.....+.+.|+++.|+.+|...  +.++.-..+
T Consensus       521 ~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil  599 (708)
T PF05804_consen  521 PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQIL  599 (708)
T ss_pred             CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHH
Confidence            7666656666789999999999654  45799999999998875 566788888999999999999865  568999999


Q ss_pred             HHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       350 ~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                      +++.++..+...             ...++.+.+....+.+|.++.|++|++.|..+|+-..+.++
T Consensus       600 ~~f~~ll~h~~t-------------r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  600 YVFYQLLFHEET-------------REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             HHHHHHHcChHH-------------HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence            999999987543             24566788899999999999999999999888876665544

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.83  E-value=9.6e-18  Score=169.01  Aligned_cols=310  Identities=17%  Similarity=0.231  Sum_probs=239.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhc
Q psy9169          79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINA  158 (440)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~  158 (440)
                      +-.++.. ...+...+...|.|++...  .....+.+.|+++.|+++|.+++.++...++++|.+|+.. .+++..+.+.
T Consensus       255 ~~~l~~k-QeqLlrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~  330 (708)
T PF05804_consen  255 LQTLIRK-QEQLLRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAES  330 (708)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHc
Confidence            3334443 3445557788888886433  3456788999999999999888999999999999999976 6789999999


Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC
Q psy9169         159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD  238 (440)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  238 (440)
                      |+++.|++++.+++..++..++++|.|++.+ +..|..++..|++|.|+.+|.++.   ....++.+|++++..+ ....
T Consensus       331 giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~---~~~val~iLy~LS~dd-~~r~  405 (708)
T PF05804_consen  331 GIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN---FREVALKILYNLSMDD-EARS  405 (708)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc---hHHHHHHHHHHhccCH-hhHH
Confidence            9999999999999999999999999999988 778999999999999999998644   4566889999999876 4455


Q ss_pred             HHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH-------------------------
Q psy9169         239 FEKIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV-------------------------  292 (440)
Q Consensus       239 ~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv-------------------------  292 (440)
                      .....+++|.+++++- .+++.+...+++.+.|++..... .+.+.+.|+++.|+                         
T Consensus       406 ~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~  484 (708)
T PF05804_consen  406 MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPL  484 (708)
T ss_pred             HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchH
Confidence            6666789999998764 45666777777777777765443 35555544444443                         


Q ss_pred             ------------HhccC-CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhc
Q psy9169         293 ------------ELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITA  357 (440)
Q Consensus       293 ------------~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~~  357 (440)
                                  .++.. .+.+...+++.+|+|+...+....+.+.+.+++|.|.++|..+  .+++.-+++..++.++.
T Consensus       485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~  564 (708)
T PF05804_consen  485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS  564 (708)
T ss_pred             HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence                        33333 2456888899999999987777777777889999999999865  45799999999999886


Q ss_pred             CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhCC
Q psy9169         358 GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCYKIISMAFN  412 (440)
Q Consensus       358 ~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~~~  412 (440)
                      ..              ..+.++.+.|.++.+..|+...  ++|+.-+...+...+.-
T Consensus       565 d~--------------~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~  607 (708)
T PF05804_consen  565 DP--------------ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF  607 (708)
T ss_pred             CH--------------HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc
Confidence            43              3367788889999999887755  45555555555444443

>KOG4199|consensus

Probab=99.77  E-value=5.8e-16  Score=137.79  Aligned_cols=310  Identities=13%  Similarity=0.140  Sum_probs=249.8

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCC
Q psy9169          83 MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANA  160 (440)
Q Consensus        83 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~  160 (440)
                      -.+++.....+++.+|..+....     ..+.+..++..++.+|  +.++.++....+.++..-|..++.+++.+++.++
T Consensus       116 a~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i  190 (461)
T KOG4199|consen  116 AESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI  190 (461)
T ss_pred             hhCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence            44677788888888887664322     3567788899999999  6677888888889999999899999999999999


Q ss_pred             HHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         161 IPKFLQLLSS-PHLNLAEQATWALGNIAGDGA---------RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       161 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~---------~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      ++.+...|.. +...+...++|++.-+..+..         .....+...|++..|+..+.-..++.++..++.+|..|+
T Consensus       191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA  270 (461)
T KOG4199|consen  191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA  270 (461)
T ss_pred             HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence            9999977765 446688889999999885532         234667788899999999997777889999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCC-CH---HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc--cCCChhHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTT-DV---ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL--DSEETTILT  304 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~-d~---~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL--~~~~~~v~~  304 (440)
                      -.. .........|.+..++.++.+. +.   .....+|..|..|+..++ ....+++.|+.+.++.++  .+++|.|..
T Consensus       271 Vr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~  348 (461)
T KOG4199|consen  271 VRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQ  348 (461)
T ss_pred             HHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHH
Confidence            775 3334455688999999999763 33   356778888888886555 458899999999999997  345789999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-C-ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHc
Q psy9169         305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-S-RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES  382 (440)
Q Consensus       305 ~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~-~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~  382 (440)
                      .++.+++-|+...+++...+++.|+-...++.|+. + ...+++.|||++.||+..+.++...+++              
T Consensus       349 ~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~--------------  414 (461)
T KOG4199|consen  349 EVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA--------------  414 (461)
T ss_pred             HHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh--------------
Confidence            99999999999999999999999999999998874 4 3579999999999999988776444443              


Q ss_pred             CcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         383 GGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       383 g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                      .|+++|.......++.....|..+|+.+-.+
T Consensus       415 ~GiE~Li~~A~~~h~tce~~akaALRDLGc~  445 (461)
T KOG4199|consen  415 NGIEKLIRTAKANHETCEAAAKAALRDLGCD  445 (461)
T ss_pred             ccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence            4677788777788888888888888877543

>KOG1048|consensus

Probab=99.75  E-value=1.5e-16  Score=156.85  Aligned_cols=325  Identities=21%  Similarity=0.264  Sum_probs=244.1

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcH--
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE--  150 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~--  150 (440)
                      ...+|..+.+|.+.++.+|..|+..+..+ +...+.....+.+.|+|+.|+.+|.+.+.++|.+|+|+|.||..++..  
T Consensus       232 d~~lpe~i~mL~~q~~~~qsnaaaylQHl-cfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  232 DPTLPEVISMLMSQDPSVQSNAAAYLQHL-CFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             ccccHHHHHHHhccChhhhHHHHHHHHHH-HhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcc
Confidence            35689999999999999999999999865 555545566777889999999999999999999999999999988766  


Q ss_pred             HHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC--------C-----cH
Q psy9169         151 QTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN--------T-----PT  216 (440)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~--------~-----~~  216 (440)
                      ++-.+.+.++|+.++.+|+. .+.++++.+..+|+||+.. ..++..++ ...+..|..-+-..        .     ..
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccc
Confidence            77889999999999999997 7799999999999999987 44444443 34455554443311        1     25


Q ss_pred             HHHHHHHHHHHhhhhCCCCCC-CHHHHhhHHHHHHHhhc-----------------------------------------
Q psy9169         217 TFLRNIVWAISNLCRNKNPAP-DFEKIKICLPLLNQLIH-----------------------------------------  254 (440)
Q Consensus       217 ~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll~-----------------------------------------  254 (440)
                      .+..+++.||.|++....... .+....+++..|+..++                                         
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~  468 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN  468 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence            677888888888876332211 11112233333322221                                         


Q ss_pred             -------------------------------------------------------------CCCHHHHHHHHHHHHHhcc
Q psy9169         255 -------------------------------------------------------------TTDVETLSDICWALSYISD  273 (440)
Q Consensus       255 -------------------------------------------------------------~~d~~i~~~a~~~L~~l~~  273 (440)
                                                                                   +.+..+...++.+|-|++.
T Consensus       469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence                                                                         1223455667777777775


Q ss_pred             CCh----hhHHHH-HhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC------h
Q psy9169         274 GHN----DKIQAV-VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR------V  342 (440)
Q Consensus       274 ~~~----~~~~~l-~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~------~  342 (440)
                      +..    .....+ .+..+++.|+++|..++..|...++.+|+|++.+-.  .+.++..++++.|++.|....      .
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r--nk~ligk~a~~~lv~~Lp~~~~~~~~se  626 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR--NKELIGKYAIPDLVRCLPGSGPSTSLSE  626 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch--hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence            443    112233 566789999999999999999999999999987543  344666789999999997642      4


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhCCCCc
Q psy9169         343 NIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       343 ~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~  415 (440)
                      ++...+|.+|.|+...+...             +.-+.+.+|+++|..+..+. ++.+.+.|..++..+|...+
T Consensus       627 dtv~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  627 DTVRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            78888999999999766543             66777889999999987765 67999999999999998765

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.71  E-value=1.7e-14  Score=143.80  Aligned_cols=324  Identities=17%  Similarity=0.208  Sum_probs=249.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy9169          77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI  156 (440)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~  156 (440)
                      +.++..|++.+.+....++.+|.+++.... +  ..+ ..+..+.|...|.++++.++..+++.|.+++.++......+.
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~--~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSALS-P--DSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhccC-H--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            347888898888888899999999986443 2  222 567788999999999999999999999999988888788899


Q ss_pred             hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169         157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA  236 (440)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  236 (440)
                      +.++++.++.++.+++..+...|+.+|.+++...+.. +.++..+.+..|..++..++ ..++..+..++.+++......
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999885544 66778888999999998755 678888999999999887555


Q ss_pred             CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC--h---hHHH-HHHHHH
Q psy9169         237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--T---TILT-AALRTV  310 (440)
Q Consensus       237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~---~v~~-~al~~L  310 (440)
                      .......|+++.++..+.++|.-++.+++.++..|+. .+...+.+.+.|+++.|+.++.+..  +   .+.. ..+...
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            5555667899999999999999999999999999999 5555689999999999999996542  2   2333 344788


Q ss_pred             HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169         311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA  390 (440)
Q Consensus       311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~  390 (440)
                      |+++...+....... ..++..+.+++.+.++..+..|.-+++.|+... +..+.+.. .....+..      .+..+-.
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~-~~~~~~~~------~l~~~~~  344 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQ-KQGPAMKH------VLKAIGD  344 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHh-hcchHHHH------HHHHHHH
Confidence            899886544332221 235666777888889999999999999998543 33222211 11112222      2344455


Q ss_pred             HhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169         391 LQHHENETVYQKCYKIISMAFNDSAE  416 (440)
Q Consensus       391 L~~~~~~~v~~~a~~il~~~~~~~~~  416 (440)
                      ...++..+++.++...+..+|...++
T Consensus       345 ~~~~~~~~lk~r~l~al~~il~~~~~  370 (503)
T PF10508_consen  345 AIKSGSTELKLRALHALASILTSGTD  370 (503)
T ss_pred             HhcCCchHHHHHHHHHHHHHHhcCCC
Confidence            56677788888888888888654443

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK09687 putative lyase; Provisional

Probab=99.68  E-value=1.8e-14  Score=132.28  Aligned_cols=255  Identities=15%  Similarity=0.128  Sum_probs=198.6

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.|+..|.+.+..++..|++.|..+-  .          ..+++.+..++.++++.+|..++|+|+.+......   
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRG--G----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcC--c----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence            46788999999999999999999998651  1          13577788888999999999999999999643211   


Q ss_pred             HHHhcCCHHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPKFLQL-LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                         ...+++.|..+ +.++++.|+..|+.+||+++......     ....++.+...+.+.+ ..++..++++|..+.. 
T Consensus        88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~-~~VR~~a~~aLg~~~~-  157 (280)
T PRK09687         88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKS-TNVRFAVAFALSVIND-  157 (280)
T ss_pred             ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCC-HHHHHHHHHHHhccCC-
Confidence               12457788877 67788999999999999997543211     1123455656666664 8899999999976542 


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                                ...++.|+.++.++++.++..|+.+|+.+...++         .+++.|+.+|.+.+..|+..|+++||.
T Consensus       158 ----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        158 ----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             ----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence                      2378999999999999999999999999954333         247889999999999999999999998


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHh
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ  392 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~  392 (440)
                      +-  ++         .+++.|++.+.+++  ++..|+.+|+++..  +.                      .++.|..++
T Consensus       219 ~~--~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~--~~----------------------a~p~L~~l~  261 (280)
T PRK09687        219 RK--DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD--KT----------------------LLPVLDTLL  261 (280)
T ss_pred             cC--Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC--Hh----------------------HHHHHHHHH
Confidence            52  22         46889999998765  67789999999853  22                      366777777


Q ss_pred             c-CCcHHHHHHHHHHHHh
Q psy9169         393 H-HENETVYQKCYKIISM  409 (440)
Q Consensus       393 ~-~~~~~v~~~a~~il~~  409 (440)
                      . +++..|..+|.+.|.+
T Consensus       262 ~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        262 YKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             hhCCChhHHHHHHHHHhc
Confidence            5 8899999999988864

>KOG4199|consensus

Probab=99.68  E-value=3.2e-14  Score=126.78  Aligned_cols=280  Identities=10%  Similarity=0.138  Sum_probs=226.5

Q ss_pred             CCHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCc-
Q psy9169          74 MTVPEMIEGMK--SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTS-  149 (440)
Q Consensus        74 ~~i~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~-  149 (440)
                      .++..++.+|.  +++.++-...+.++++-...+. .+++.+.+.++++.+...| ......+..++.|++.-+..++. 
T Consensus       145 ~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE-~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi  223 (461)
T KOG4199|consen  145 EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHE-VNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI  223 (461)
T ss_pred             ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH-HHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence            45667777775  5667888888888887654443 6789999999999999877 55555788899999999876542 


Q ss_pred             --------HHHHHHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcH---H
Q psy9169         150 --------EQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT---T  217 (440)
Q Consensus       150 --------~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~---~  217 (440)
                              .+.+.+...|++..|+..++.. ++.+...++.+|+.|+-. .++...+.+.|++..|++++.++...   +
T Consensus       224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~  302 (461)
T KOG4199|consen  224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRT  302 (461)
T ss_pred             eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHH
Confidence                    4667888889999999999863 478888999999999977 44558888999999999999875533   4


Q ss_pred             HHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh--cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169         218 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI--HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL  295 (440)
Q Consensus       218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll--~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL  295 (440)
                      +.+.++.+|+.|+.++ .........++.+.++.++  +.+||.+...++.+++.|+-..++....+++.|+-...++.|
T Consensus       303 l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAm  381 (461)
T KOG4199|consen  303 LAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAM  381 (461)
T ss_pred             HHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHH
Confidence            6688899999999776 5556666788899988877  457899999999999999999999999999999999999999


Q ss_pred             cCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         296 DSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       296 ~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      +..  ...++..||+.|.|++..+.++...++..| ++.|+......+++....|--+|..+..
T Consensus       382 kahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  382 KAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence            654  247999999999999999988888888765 5666666666677777777777777753

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.67  E-value=8.3e-15  Score=131.48  Aligned_cols=240  Identities=22%  Similarity=0.257  Sum_probs=187.7

Q ss_pred             HHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         155 VINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      +.+.+-++.|+.+|+. .++.+++.++.+++|.+.. +..++.+.+.|+++.+..++.+++ +.++..++++|.|++.+.
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~-~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPN-PSVREKALNALNNLSVND   85 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCC-hHHHHHHHHHHHhcCCCh
Confidence            3566788999999996 5699999999999998877 788899999999999999999887 899999999999999876


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG  311 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~  311 (440)
                      +..   ......++.+.+.+.+  -|..++..++.+|.+|+..++.  +.++ .+.++.++.+|.+++..++..++++|.
T Consensus        86 en~---~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~  159 (254)
T PF04826_consen   86 ENQ---EQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHML-ANYIPDLLSLLSSGSEKTKVQVLKVLV  159 (254)
T ss_pred             hhH---HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhH-HhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence            332   2334566666665433  4778999999999999866553  3333 346999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHh-hcCcchHHHHHHHHcC-cHHHH
Q psy9169         312 NIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVI-QEGELNQMALLVEESG-GLEKL  388 (440)
Q Consensus       312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~i-~~~~~~~~~~~l~~~g-~l~~l  388 (440)
                      ||+... ..+..++.++++..++.+++.. ..++...+.+.+.||..+-........ +-...+.+..++.+.+ ..++|
T Consensus       160 nLS~np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l  238 (254)
T PF04826_consen  160 NLSENP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL  238 (254)
T ss_pred             HhccCH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence            998755 4677799999999999999986 567899999999999865221111111 1111233445566655 67889


Q ss_pred             HHHhcCCcHHHHHHH
Q psy9169         389 EALQHHENETVYQKC  403 (440)
Q Consensus       389 ~~L~~~~~~~v~~~a  403 (440)
                      ..|..|++++|+.++
T Consensus       239 ~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  239 QALANHPDPEVKEQV  253 (254)
T ss_pred             HHHHcCCCHHHhhhc
Confidence            999999999999875

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.65  E-value=2.9e-17  Score=124.55  Aligned_cols=93  Identities=38%  Similarity=0.605  Sum_probs=62.0

Q ss_pred             cchhhHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccch-h-hhccccCCCCCCcccCCHHHHH
Q psy9169           3 QKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIE-E-ENVTVIEPTCMSPIKMTVPEMI   80 (440)
Q Consensus         3 ~~~~~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~lv   80 (440)
                      .+++++.|++.||++|+|++|+||||++..|+|||+||+|.|.|||++....... + ..... ...........++.++
T Consensus         2 ~~~~~~~R~~~yK~~g~d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~v   80 (97)
T PF01749_consen    2 SSKKPENRRKSYKNKGKDAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESD-QNSSAQQLNEELPEMV   80 (97)
T ss_dssp             -----GGGGGGSTTTT-SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT------------------TCCCCS--HHHHHHH
T ss_pred             CccCHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccc-ccccccccccccHHHH
Confidence            3678999999999999999999999999999999999999999999997522211 1 11100 0000112345678899


Q ss_pred             HHhcCCCHHHHHHHHH
Q psy9169          81 EGMKSSNPKMRMIATR   96 (440)
Q Consensus        81 ~~L~s~~~~~~~~a~~   96 (440)
                      ..+.|+|+..|+.|+.
T Consensus        81 ~~v~S~d~~~ql~Atq   96 (97)
T PF01749_consen   81 AGVNSDDPEVQLEATQ   96 (97)
T ss_dssp             HHHTSSCHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHhhC
Confidence            9999999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>KOG2122|consensus

Probab=99.65  E-value=2.3e-14  Score=147.53  Aligned_cols=328  Identities=16%  Similarity=0.181  Sum_probs=250.5

Q ss_pred             cCCHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCCCCc--HHHHHHhCCHH-------HHHHhccCC-------ChHH
Q psy9169          73 KMTVPEMIEGMKSSN---PKMRMIATRSARKMLSKERHPP--IDELIEAGVVP-------ICVELLDDE-------NPNT  133 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~---~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g~i~-------~Lv~lL~~~-------~~~i  133 (440)
                      ...++.|++.|+.+|   .+.+..|-.+|.+++...++..  ..++---.++.       .+-.+|...       ..+-
T Consensus       234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H  313 (2195)
T KOG2122|consen  234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH  313 (2195)
T ss_pred             ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence            468899999998544   5778888889999987655332  11111111122       111222111       1234


Q ss_pred             HH-HHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCC------------CHHHHHHHHHHHHHhhCCCchhHHHHH-h
Q psy9169         134 QF-EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP------------HLNLAEQATWALGNIAGDGARARDLLL-G  199 (440)
Q Consensus       134 ~~-~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~------------~~~v~~~a~~~L~nl~~~~~~~r~~i~-~  199 (440)
                      +. .|+.+|..++.+ ++++..+-+.|++..+..||.-.            +..+|..+..+|-||.......+..+. .
T Consensus       314 ~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~  392 (2195)
T KOG2122|consen  314 QLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ  392 (2195)
T ss_pred             hhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            55 677778888755 89999999999999999988521            157899999999999966555655555 6


Q ss_pred             cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH-HHHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHhccCChh
Q psy9169         200 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-EKIKICLPLLNQL-IHTTDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       200 ~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~~L~~l-l~~~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                      .|++..++..|.+.. .++....+.+|.||+...+..... ....+-+..|+.+ ++...+..+..++.+|+||+.+..+
T Consensus       393 rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  393 RGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             hhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence            799999999998776 789999999999999765433222 2224555555544 4556678899999999999988887


Q ss_pred             hHHHHHhc-CChHHHHHhccCC----ChhHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHH
Q psy9169         278 KIQAVVDT-GVVPRLVELLDSE----ETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA  349 (440)
Q Consensus       278 ~~~~l~~~-g~~~~Lv~lL~~~----~~~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~  349 (440)
                      ....+... |++..||.+|...    ...+...|-.+|.|+..   ..+.+.+.+.+++++..|+..|++..-.+..++|
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC  551 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC  551 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence            77766664 9999999999764    34678888888888754   5677899999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       350 ~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                      .+|+||.+.+++.             .++|++.|.+..|.+|++++|..|.+-+...|.+++...+
T Consensus       552 GTLWNLSAR~p~D-------------Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  552 GTLWNLSARSPED-------------QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             hhhhhhhcCCHHH-------------HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            9999999987654             6889999999999999999999999999999999987664

>KOG2122|consensus

Probab=99.65  E-value=1.1e-14  Score=149.89  Aligned_cols=265  Identities=18%  Similarity=0.177  Sum_probs=218.3

Q ss_pred             HHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC------------CChHHHHHHHHHHHHHhCCCcHHHHHH-HhcC
Q psy9169          93 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------------ENPNTQFEATWALTNIASGTSEQTMTV-INAN  159 (440)
Q Consensus        93 ~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~------------~~~~i~~~a~~~L~nla~~~~~~~~~i-~~~g  159 (440)
                      .|+..|.++ +.+. ..+..+.+-|++..+-++|.-            .+..+|.++..+|+||+.++..++..+ -..|
T Consensus       317 aA~~~lMK~-SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  317 AALCTLMKL-SFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             HHHHHHHHh-hccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            556666655 5554 557788888888888887721            123589999999999999988777755 4569


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCC
Q psy9169         160 AIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAP  237 (440)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~  237 (440)
                      ++..+|..|.+...++....+.+|.||+-. ....+..+.+.|-+..|+...-....+..++.++.+|+||+-+.. ...
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            999999999999889999999999999933 245666677889999998886655557788999999999997653 334


Q ss_pred             CHHHHhhHHHHHHHhhcCC----CHHHHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169         238 DFEKIKICLPLLNQLIHTT----DVETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV  310 (440)
Q Consensus       238 ~~~~~~~~~~~L~~ll~~~----d~~i~~~a~~~L~~l~---~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L  310 (440)
                      .+..+-+++..|+.+|...    .-.|+..+-++|.|.+   .....+.+.+.++.++..|++.|++.+..+..++|.+|
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence            5667789999999999643    3467888888887765   34455668999999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169         311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN  359 (440)
Q Consensus       311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~  359 (440)
                      +||...+++..+++++.|+++.|.+++.+.+..+..-++-+|.|+....
T Consensus       555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999864

>KOG0168|consensus

Probab=99.64  E-value=9e-14  Score=137.09  Aligned_cols=261  Identities=20%  Similarity=0.341  Sum_probs=223.6

Q ss_pred             CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          74 MTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        74 ~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ..+..|++.|+.. |+..|++|+..++.+++-.......-+--.-++|.|+.+| ...+.+++..|+++|++++.--|..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            3577888888865 9999999999999999876544444333346899999999 6778999999999999999988999


Q ss_pred             HHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         152 TMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      ...+++.++||.|+.-|.. +-.++.|+++.+|-.|+...+   ..+++.|++-..+..+.--. ..+++.|+.+..|+|
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~C  322 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFS-IHAQRVALAIAANCC  322 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            9999999999999988876 448999999999999997654   45888999999999887655 789999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhccCCC----hhHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEE----TTIL  303 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~---~~~~~~~~l~~~g~~~~Lv~lL~~~~----~~v~  303 (440)
                      ..- +...+..+.+.+|.|..+|...|...+..+|-++.++++   +.++..+.+...|++....++|.-..    ..+.
T Consensus       323 ksi-~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  323 KSI-RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             hcC-CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence            887 666777889999999999999999999999999999985   45677788899999999999986542    3567


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC
Q psy9169         304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS  339 (440)
Q Consensus       304 ~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~  339 (440)
                      ...++.+.-++.+.+.....+...++...|..+|..
T Consensus       402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            778899999999999888889999999999999865

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.62  E-value=1.6e-12  Score=129.85  Aligned_cols=322  Identities=18%  Similarity=0.185  Sum_probs=245.9

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ...++.++..+.++|..+...|+..|.++++..  +..+.++..+.++.|..++...++.+|..+..++.+++..+++..
T Consensus       118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            356888999999999999999999999997643  345678888889999999977788999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH-----HHHHHHHHHH
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT-----FLRNIVWAIS  227 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~-----~~~~a~~~L~  227 (440)
                      ..+.+.|+++.++..|.+++.-++..++.+|..++. .+.....+.+.|+++.|..++.......     +.-..+....
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            999999999999999999889999999999999999 5777789999999999999998543222     3344446667


Q ss_pred             hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHH-Hhc-CC----hHHHHHhccCCChh
Q psy9169         228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV-VDT-GV----VPRLVELLDSEETT  301 (440)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l-~~~-g~----~~~Lv~lL~~~~~~  301 (440)
                      +++... +..-......++..+..++.+.|+..+..|+.+++.++...... ..+ .+. +.    +..+-....+...+
T Consensus       275 ~la~~~-~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~-~~L~~~~~~~~~~~l~~~~~~~~~~~~~  352 (503)
T PF10508_consen  275 NLARVS-PQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK-QLLLQKQGPAMKHVLKAIGDAIKSGSTE  352 (503)
T ss_pred             HHHhcC-hHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH-HHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence            777753 33223334567777788888999999999999999999766554 444 333 33    44444445566778


Q ss_pred             HHHHHHHHHHHhhcCChH-H-------HHHHH---HcCCHH-HHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhc
Q psy9169         302 ILTAALRTVGNIATGNDH-Q-------TDCVI---QAGGLQ-KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE  369 (440)
Q Consensus       302 v~~~al~~L~nl~~~~~~-~-------~~~l~---~~g~l~-~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~  369 (440)
                      ++..++.+++++...... .       .+...   ..+-.. .++.+++.+=+++|..+...|..++.....+       
T Consensus       353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~-------  425 (503)
T PF10508_consen  353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ-------  425 (503)
T ss_pred             HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH-------
Confidence            999999999999643322 1       11111   123344 7788888877899999999999999876543       


Q ss_pred             CcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         370 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       370 ~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                            ..+....|.++.+.+=....+.+..+.=..++..+..
T Consensus       426 ------~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~  462 (503)
T PF10508_consen  426 ------REICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK  462 (503)
T ss_pred             ------HHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence                  3445566667777666666677777777777777663

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.60  E-value=1.9e-13  Score=122.78  Aligned_cols=227  Identities=18%  Similarity=0.179  Sum_probs=176.8

Q ss_pred             HHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q psy9169         113 LIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA  191 (440)
Q Consensus       113 ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  191 (440)
                      +.+.+-++.|+.+| .+.+|.++..++.++++.+.. +..+..+.+.|+++.+..+|.++++.+++.|+++|.|++.+.+
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence            35667789999999 678999999999999998765 7888999999999999999999999999999999999998744


Q ss_pred             hhHHHHHhcCChHHHHhhhCC-CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy9169         192 RARDLLLGLGTMPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY  270 (440)
Q Consensus       192 ~~r~~i~~~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~  270 (440)
                      . +..+-  ..++.+++.+.+ +.+..++..++.+|.||+...+ .  .......+|.++.+|..++..++..++++|.+
T Consensus        87 n-~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~n  160 (254)
T PF04826_consen   87 N-QEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-Y--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVN  160 (254)
T ss_pred             h-HHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-h--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            3 34443  246666665443 3457889999999999986652 2  22345689999999999999999999999999


Q ss_pred             hccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHHHHHhhcCChH--------------HHHHHHHcC-CHHHHH
Q psy9169         271 ISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDH--------------QTDCVIQAG-GLQKMK  334 (440)
Q Consensus       271 l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~--------------~~~~l~~~g-~l~~L~  334 (440)
                      |+..+.. ...++.++++..++.++... +.++...++..+.||..+-..              ..-.+-+.+ +.+.|.
T Consensus       161 LS~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~  239 (254)
T PF04826_consen  161 LSENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQ  239 (254)
T ss_pred             hccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHH
Confidence            9987664 47788889999999999775 568899999999999643111              111111222 556666


Q ss_pred             HHhcCCChhHHHH
Q psy9169         335 KLLSSSRVNIVKE  347 (440)
Q Consensus       335 ~ll~~~~~~i~~~  347 (440)
                      .+..+++++||..
T Consensus       240 ~l~~h~d~ev~~~  252 (254)
T PF04826_consen  240 ALANHPDPEVKEQ  252 (254)
T ss_pred             HHHcCCCHHHhhh
Confidence            7777777777654

>KOG1048|consensus

Probab=99.57  E-value=1.5e-13  Score=135.84  Aligned_cols=291  Identities=17%  Similarity=0.214  Sum_probs=228.2

Q ss_pred             CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hHH
Q psy9169         118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR--ARD  195 (440)
Q Consensus       118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~--~r~  195 (440)
                      -+|..+.+|.+.++.+|..|+.-+..++.++.+.+..+.+.|+|+.|+.+|.+++.+|+.+|+|+|.||......  .+-
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl  313 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL  313 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence            478888999999999999999999999999999999999999999999999999999999999999999965544  667


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC--------------CCHHHH
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--------------TDVETL  261 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--------------~d~~i~  261 (440)
                      .+.+.++++.++++++...+.++.+.++.+|+||++.+  .....+....++.|...+-.              .+..+.
T Consensus       314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D--~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND--ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            78899999999999998666899999999999999884  34555666677776654411              135788


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhccC------CChhHHHHHHHHHHHhhcCCh----------------
Q psy9169         262 SDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDS------EETTILTAALRTVGNIATGND----------------  318 (440)
Q Consensus       262 ~~a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~------~~~~v~~~al~~L~nl~~~~~----------------  318 (440)
                      ..+..+|.|++....+..+.+.+. |+|..|+..+++      .+..-.++++-++.|+...-.                
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            999999999999777777777665 899999988863      345667788888888854211                


Q ss_pred             ---------------HHHHH----------------------HHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCCh
Q psy9169         319 ---------------HQTDC----------------------VIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNS  360 (440)
Q Consensus       319 ---------------~~~~~----------------------l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~  360 (440)
                                     .....                      ++...++..-..++. +.++.+.+.++.+|-|++++..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                           00000                      111223444344444 4467889999999999999865


Q ss_pred             HHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCcccc
Q psy9169         361 RQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS  418 (440)
Q Consensus       361 ~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~  418 (440)
                      .....+        .+..+....|++.|.+|++.+++.|...+..+|.++--+-...+
T Consensus       552 ~~~~~~--------~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~  601 (717)
T KOG1048|consen  552 TWSEYM--------RGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKE  601 (717)
T ss_pred             cchhHH--------HhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhh
Confidence            443332        13455888999999999999999999999999999977655443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.56  E-value=9.5e-14  Score=111.61  Aligned_cols=119  Identities=32%  Similarity=0.570  Sum_probs=110.9

Q ss_pred             HHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q psy9169         112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA  191 (440)
Q Consensus       112 ~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  191 (440)
                      .+++.|+++.|++++.+.++.++..++++|++++..+++....+++.|+++.++.+|.++++.++..++|+|+|++.+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            46788999999999988889999999999999999988999999999999999999999999999999999999999887


Q ss_pred             hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         192 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       192 ~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                      ..+..+...|+++.|+.++...+ ..+++.++|+|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence            88888889999999999998776 8999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.55  E-value=6.2e-13  Score=122.13  Aligned_cols=207  Identities=14%  Similarity=0.105  Sum_probs=163.9

Q ss_pred             CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169         118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL  197 (440)
Q Consensus       118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  197 (440)
                      -++.|..+|.+++..++..++++|..+..           ..+++.+..++.++++.+|..++|+|+.|......     
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence            47788999999999999999999998863           25678888999999999999999999998643211     


Q ss_pred             HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169         198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                       ....++.|..++.++.+..++..++.+|++++.... ..    ...+++.+...+.+.++.++..++++|+.+..  + 
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-cc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence             113567788776666668999999999999975542 11    23456667788888999999999999987753  1 


Q ss_pred             hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       278 ~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                              ..++.|+.+|.++++.|+..|+.+||.+..+++         .+++.|+.++.+.++.++..|+|+|+.+  
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~--  219 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR--  219 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc--
Confidence                    248999999999999999999999999944343         3567799999999999999999999997  


Q ss_pred             CChHHHHHHhh
Q psy9169         358 GNSRQIDHVIQ  368 (440)
Q Consensus       358 ~~~~~~~~~i~  368 (440)
                      +++..+..+++
T Consensus       220 ~~~~av~~Li~  230 (280)
T PRK09687        220 KDKRVLSVLIK  230 (280)
T ss_pred             CChhHHHHHHH
Confidence            34555555444

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.51  E-value=5.7e-13  Score=107.03  Aligned_cols=117  Identities=39%  Similarity=0.589  Sum_probs=109.6

Q ss_pred             HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHH
Q psy9169         241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ  320 (440)
Q Consensus       241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~  320 (440)
                      ...++++.+++++.+.++.++..++++|++++...++....+++.|+++.++++|.++++.++..|+++|+|++.+.+..
T Consensus         4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~   83 (120)
T cd00020           4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN   83 (120)
T ss_pred             HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence            34678999999999999999999999999999998888889999999999999999999999999999999999988888


Q ss_pred             HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         321 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       321 ~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ...+.+.|+++.|..++...+..+++.++|+|.|+++
T Consensus        84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            8889999999999999999999999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.47  E-value=5.1e-11  Score=113.89  Aligned_cols=320  Identities=14%  Similarity=0.112  Sum_probs=226.1

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh-----CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169          76 VPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEA-----GVVPICVELLDDENPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        76 i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-----g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~  149 (440)
                      +..++.++. ....++....+..+..++...+ .....+.+.     ....+++.+|..++.-++..|+.+|+.+.+..+
T Consensus        55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~  133 (429)
T cd00256          55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL  133 (429)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence            556777776 4557777778888888886543 234455543     577888888888889999999999999987644


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC-cHHHHHHHHHHHH
Q psy9169         150 EQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAIS  227 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~  227 (440)
                      .........-.++.|...+++++ ...+..|+.+|..+... +.+|..+.+.++++.|+.+|+... +..++-.++.|++
T Consensus       134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW  212 (429)
T cd00256         134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW  212 (429)
T ss_pred             cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            32221111123445666666543 67788889999999887 678888888889999999998654 5788999999999


Q ss_pred             hhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCC------hhhHHHHHhcCChHHHHHhccC--C
Q psy9169         228 NLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGH------NDKIQAVVDTGVVPRLVELLDS--E  298 (440)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~------~~~~~~l~~~g~~~~Lv~lL~~--~  298 (440)
                      -|+..++ ........+++|.++.+++. ..+.+..-++.++.|+...+      ......+++.|+.+.+-.+...  .
T Consensus       213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~  291 (429)
T cd00256         213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYD  291 (429)
T ss_pred             HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCC
Confidence            9887763 23333346899999999976 46789999999999999753      2344567777865544444332  2


Q ss_pred             ChhHHHHHHHHHHHh--------hc----------C----Ch---------HHHHHHHHcC--CHHHHHHHhc-CCChhH
Q psy9169         299 ETTILTAALRTVGNI--------AT----------G----ND---------HQTDCVIQAG--GLQKMKKLLS-SSRVNI  344 (440)
Q Consensus       299 ~~~v~~~al~~L~nl--------~~----------~----~~---------~~~~~l~~~g--~l~~L~~ll~-~~~~~i  344 (440)
                      ++++.. .+..|...        ++          |    +|         ++...+.+.+  ++..|+++|. +.++.+
T Consensus       292 DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         292 DEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             cHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence            444322 22222211        10          0    11         2233344433  6788999995 456788


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         345 VKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      ..-||.=|+.++...|.-             +..+++.|+-+.+..|+.|+|++|+..|..++.+++.
T Consensus       371 laVAc~Dige~vr~~P~g-------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         371 LAVACHDIGEYVRHYPRG-------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             eehhhhhHHHHHHHCccH-------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            888999999998765543             6778899999999999999999999999999998864

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.47  E-value=4e-11  Score=128.16  Aligned_cols=248  Identities=15%  Similarity=0.131  Sum_probs=150.2

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.|+..|.++++.+|..|+..|..+-   .         .++++.|+..|.++++.++..|+.+|..+....     
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~---~---------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----  683 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETT---P---------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----  683 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhc---c---------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence            46788999999999999999999998652   1         236888999999999999999999998885321     


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh-----
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN-----  228 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~-----  228 (440)
                           ...+.|...|.++++.++..++.+|+.+....            ...|+..|.+.+ ..++..++++|..     
T Consensus       684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d-~~VR~~Av~aL~~~~~~~  745 (897)
T PRK13800        684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDPD-HRVRIEAVRALVSVDDVE  745 (897)
T ss_pred             -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCC-HHHHHHHHHHHhcccCcH
Confidence                 12345566666666777777776666653221            122333343333 4455555555544     


Q ss_pred             -----------------------hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169         229 -----------------------LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT  285 (440)
Q Consensus       229 -----------------------l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~  285 (440)
                                             +....         ...++.|..++.+.|+.++..++.+|+.+.....         
T Consensus       746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~---------  807 (897)
T PRK13800        746 SVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGCPPD---------  807 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcch---------
Confidence                                   33221         0113444455555555555555555554432110         


Q ss_pred             CChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q psy9169         286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH  365 (440)
Q Consensus       286 g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  365 (440)
                       +++.++..|.++++.|+..|+.+|+.+..           ...++.|..+|.++++.||+.|+++|+.+ .+++.    
T Consensus       808 -~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~~~----  870 (897)
T PRK13800        808 -DVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW-PGDPA----  870 (897)
T ss_pred             -hHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc-CCCHH----
Confidence             12334455555555555555555554421           12346666666666666777777777665 22222    


Q ss_pred             HhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy9169         366 VIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM  409 (440)
Q Consensus       366 ~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~  409 (440)
                                        ..+.|...+.+++.+|+..|...|+.
T Consensus       871 ------------------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        871 ------------------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             ------------------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence                              24567788889999999999998864

>KOG4500|consensus

Probab=99.42  E-value=1.5e-11  Score=113.41  Aligned_cols=314  Identities=13%  Similarity=0.101  Sum_probs=220.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHH----HHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCC
Q psy9169          85 SSNPKMRMIATRSARKMLSKERHPPIDE----LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANA  160 (440)
Q Consensus        85 s~~~~~~~~a~~~l~~lls~~~~~~~~~----ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~  160 (440)
                      ..+..+...+..++......+  ..+..    -+.++.+..|.+...+++.++..++.++|+|+|.++.+.|..+.+.|+
T Consensus        53 ~~~~tv~~~qssC~A~~sk~e--v~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG  130 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNE--VERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG  130 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhH--HHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence            344556666666776654211  12222    345677777777777888999999999999999999999999999999


Q ss_pred             HHHHHHhhCC----C---CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC-CCCcHHHHHHHHHHHHhhhhC
Q psy9169         161 IPKFLQLLSS----P---HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       161 i~~L~~lL~~----~---~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      -..++.+|+.    .   +.+....+.+.|.|..-++...|..+.+.|+++.|..++. ...+....+.+.-...|+.+-
T Consensus       131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~  210 (604)
T KOG4500|consen  131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF  210 (604)
T ss_pred             ceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH
Confidence            8888888864    1   2577778899999999999999999999999999998887 333444445444444443321


Q ss_pred             CC-CCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CCh-------hH
Q psy9169         233 KN-PAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EET-------TI  302 (440)
Q Consensus       233 ~~-~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~-------~v  302 (440)
                      .. ...++.....+.-.+++++.. ..+.+..-++..+.+.+.++.-. -.+.+.|.++.++.++.. ++.       ..
T Consensus       211 ~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l  289 (604)
T KOG4500|consen  211 VCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNL  289 (604)
T ss_pred             HHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHH
Confidence            10 011222233444555555543 45667777888888888776644 556788999999999865 211       23


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcC-CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHH
Q psy9169         303 LTAALRTVGNIATGNDHQTDCVIQAG-GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEE  381 (440)
Q Consensus       303 ~~~al~~L~nl~~~~~~~~~~l~~~g-~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~  381 (440)
                      ...++..+.-+.+|++. .+.+...+ +++.+...+.+.+.+..-.+..+++|++.....              |..+-+
T Consensus       290 ~k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~--------------ci~~v~  354 (604)
T KOG4500|consen  290 FKRIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDI--------------CIQLVQ  354 (604)
T ss_pred             HHhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchH--------------HHHHHH
Confidence            34455555556667664 44555555 899999999999999999999999999986644              455556


Q ss_pred             cCcHHHHHHHhc-----CCcHHHHHHHHHHHHhhCCCCcc
Q psy9169         382 SGGLEKLEALQH-----HENETVYQKCYKIISMAFNDSAE  416 (440)
Q Consensus       382 ~g~l~~l~~L~~-----~~~~~v~~~a~~il~~~~~~~~~  416 (440)
                      .|.+.+|.+++.     .+|-+++..+..+++++.-.-.+
T Consensus       355 ~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n  394 (604)
T KOG4500|consen  355 KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN  394 (604)
T ss_pred             HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence            677777776544     35778999999999999764443

>KOG4500|consensus

Probab=99.42  E-value=7.6e-11  Score=108.79  Aligned_cols=339  Identities=14%  Similarity=0.124  Sum_probs=229.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc----CC---ChHHHHHHHHHHHHHhCC
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD----DE---NPNTQFEATWALTNIASG  147 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~----~~---~~~i~~~a~~~L~nla~~  147 (440)
                      .++.|.+...|+|.++-.+..+++.|+... ++..+..+.+.|+-..++..|+    .+   +.+....+...|.|...+
T Consensus        88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCyd-n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~  166 (604)
T KOG4500|consen   88 ALELLRQTPSSPDTEVHEQCFRALGNICYD-NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILD  166 (604)
T ss_pred             HHHHHHhCCCCCcccHHHHHHHHHhhhhcc-CchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCC
Confidence            466777778899999999999999999654 4478899999999777777772    12   236777788999999999


Q ss_pred             CcHHHHHHHhcCCHHHHHHhhCC--CCHHH--------------------------------------------HHHHHH
Q psy9169         148 TSEQTMTVINANAIPKFLQLLSS--PHLNL--------------------------------------------AEQATW  181 (440)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~lL~~--~~~~v--------------------------------------------~~~a~~  181 (440)
                      +.+.+..+++.|+++.|...+--  ++.+.                                            .+.+..
T Consensus       167 ~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe  246 (604)
T KOG4500|consen  167 SRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE  246 (604)
T ss_pred             cHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence            99999999999999988766632  22222                                            222333


Q ss_pred             HHHHhhCCCchhHHHHHhcCChHHHHhhhCCC-------CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc
Q psy9169         182 ALGNIAGDGARARDLLLGLGTMPQILALVQPN-------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH  254 (440)
Q Consensus       182 ~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~  254 (440)
                      .|...+.+ ...+-.+.+.|.+..+++++++-       +.......++....-|..+++.-........++..+...+.
T Consensus       247 ila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~  325 (604)
T KOG4500|consen  247 ILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR  325 (604)
T ss_pred             HHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence            33333222 22223344566666666666531       11233444555555555554221111222348889999999


Q ss_pred             CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-----CChhHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy9169         255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-----EETTILTAALRTVGNIATGNDHQTDCVIQAGG  329 (440)
Q Consensus       255 ~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~  329 (440)
                      ++|...+..+.-+|+|+++.++.++ .+++.|.+..|+.+|..     ++.+++.+++.+|.|++..-+ ....++.+|+
T Consensus       326 S~d~~l~t~g~LaigNfaR~D~~ci-~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aGv  403 (604)
T KOG4500|consen  326 SDDSNLITMGSLAIGNFARRDDICI-QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAGV  403 (604)
T ss_pred             CCchhHHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC-chhhccccch
Confidence            9999999999999999999988775 56789999999999854     355788899999999987655 4566899999


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhcC----------ChHHHHHHhh----------cCcch-------------HHH
Q psy9169         330 LQKMKKLLSSSRVNIVKEAAWTISNITAG----------NSRQIDHVIQ----------EGELN-------------QMA  376 (440)
Q Consensus       330 l~~L~~ll~~~~~~i~~~a~~~L~nl~~~----------~~~~~~~~i~----------~~~~~-------------~~~  376 (440)
                      .+.+...+....|.+.-.-..+++.+..+          +++-+..+++          .|+.+             ...
T Consensus       404 teaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~  483 (604)
T KOG4500|consen  404 TEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVI  483 (604)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhH
Confidence            99999999988888887777777776543          3344445554          12211             122


Q ss_pred             HHHHHcCcHHHHHHHhcCCcHHHHHHHH---HHHHhhCCCCccc
Q psy9169         377 LLVEESGGLEKLEALQHHENETVYQKCY---KIISMAFNDSAEN  417 (440)
Q Consensus       377 ~~l~~~g~l~~l~~L~~~~~~~v~~~a~---~il~~~~~~~~~~  417 (440)
                      ..+-..||++.........+-..+.-|.   -+++..+.....+
T Consensus       484 ~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~k  527 (604)
T KOG4500|consen  484 LTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGK  527 (604)
T ss_pred             hhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccch
Confidence            3344577888877776666555554443   3344444444443

>KOG1222|consensus

Probab=99.42  E-value=1.6e-10  Score=108.05  Aligned_cols=315  Identities=15%  Similarity=0.157  Sum_probs=225.4

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..+..||+.|..++.++.......+.++.-..  .+...+.+.|++..|+.++...+|+++...+..|.|++.+ ...+.
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~--eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~  380 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD--ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRP  380 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhhc--cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccH
Confidence            35678899999888888888888887774333  3567888999999999999999999999999999999976 56788


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      .++..|.+|.|+.+|.+...  ...|+..|..++.+ ...+.++.....|+.+...+-.+.+.++-...+...-|||-++
T Consensus       381 KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk  457 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK  457 (791)
T ss_pred             HHhhccchHHHHHHhCCccc--chhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc
Confidence            99999999999999988752  23477788888877 4566777777888888887766554444444444444555433


Q ss_pred             CCCC------------------------------------CHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCh
Q psy9169         234 NPAP------------------------------------DFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       234 ~~~~------------------------------------~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                      ....                                    .....-..+..|...+. .++++....+++++++|.-.+-
T Consensus       458 RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dl  537 (791)
T KOG1222|consen  458 RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDL  537 (791)
T ss_pred             ccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCC
Confidence            1110                                    00000111222333333 3456778899999999997766


Q ss_pred             hhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHH
Q psy9169         277 DKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTI  352 (440)
Q Consensus       277 ~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L  352 (440)
                      +-.+.+-+..++|-+-..|...  ..+++...+-++|.++.. ......+..+|+++.|+.+|+..  +.++.-...++.
T Consensus       538 dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF  616 (791)
T KOG1222|consen  538 DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF  616 (791)
T ss_pred             CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence            6666777779999999988654  346777777778876653 44666777889999999999864  456777777777


Q ss_pred             HHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy9169         353 SNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS  408 (440)
Q Consensus       353 ~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~  408 (440)
                      ..+..+..             ....++.+...-..+.+|.+..|.+|++-+...|.
T Consensus       617 ~Q~l~He~-------------tr~~miket~~~AylIDLMHDkN~eiRkVCDn~Ld  659 (791)
T KOG1222|consen  617 LQFLKHEL-------------TRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALD  659 (791)
T ss_pred             HHHHHHHH-------------HHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHH
Confidence            77765521             12445666667778889999999988776655443

>KOG1293|consensus

Probab=99.41  E-value=2.2e-10  Score=111.08  Aligned_cols=323  Identities=15%  Similarity=0.195  Sum_probs=214.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          78 EMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      .++..+.+.+++....|..-..+.+.+.+ ++...+++.|.++.++.++  .+..++.+.+.+-++...+.+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~~-~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGFT-DNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcCC-CccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            34555667788888889999998887765 4556899999999999999  55667788888888888998888888899


Q ss_pred             HhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHhhhC---------------------
Q psy9169         156 INANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARAR--DLLLGLGTMPQILALVQ---------------------  211 (440)
Q Consensus       156 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~i~~L~~ll~---------------------  211 (440)
                      .+.+.++.|+++|.+++ ..+++..+.++.++...++..-  .......+++.+..++.                     
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~  171 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK  171 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence            99999999999999998 8899999999999875543210  00001111111111111                     


Q ss_pred             -------------------CCCcHHHHHHHHHHHH---hhhhCCCCCCCHHH----HhhH--------------------
Q psy9169         212 -------------------PNTPTTFLRNIVWAIS---NLCRNKNPAPDFEK----IKIC--------------------  245 (440)
Q Consensus       212 -------------------~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~----~~~~--------------------  245 (440)
                                         ...+...+..+..+++   ++..+++.......    ..++                    
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence                               0001222333333333   22221100000000    0000                    


Q ss_pred             ---------------------------------------------------------------------------HHHHH
Q psy9169         246 ---------------------------------------------------------------------------LPLLN  250 (440)
Q Consensus       246 ---------------------------------------------------------------------------~~~L~  250 (440)
                                                                                                 .+.+.
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence                                                                                       01111


Q ss_pred             Hhh----------------------------------------------------cCCCHHHHHHHHHHHHHhccCChhh
Q psy9169         251 QLI----------------------------------------------------HTTDVETLSDICWALSYISDGHNDK  278 (440)
Q Consensus       251 ~ll----------------------------------------------------~~~d~~i~~~a~~~L~~l~~~~~~~  278 (440)
                      +++                                                    ...|...+.++|-++-+++..-...
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            110                                                    0112222333333333333222211


Q ss_pred             HHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         279 IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       279 ~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      ...+-...+..+|++++..++..|...++.+|.|++.........++..|+++.+..++.+.++.++..+.|+|.++.-+
T Consensus       412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~  491 (678)
T KOG1293|consen  412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFN  491 (678)
T ss_pred             HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc
Confidence            12223456899999999999999999999999999987777888899999999999999999999999999999999988


Q ss_pred             ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         359 NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       359 ~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                      +.+..+...           +.+. +...|..+.+.+++.|++++.++++++..+
T Consensus       492 ~de~~k~~~-----------~~ki-~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  492 CDEEEKFQL-----------LAKI-PANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             chHHHHHHH-----------HHHh-hHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            766433221           1111 356688899999999999999999999876

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.39  E-value=2.4e-10  Score=109.36  Aligned_cols=282  Identities=16%  Similarity=0.187  Sum_probs=203.8

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC-CChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~-~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .....++.+|+.+|..++..|+..+..+++.... ........-.+..|...|.+ .+...+.-++.+|..+... ++.|
T Consensus       101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R  178 (429)
T cd00256         101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYR  178 (429)
T ss_pred             cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHH
Confidence            3467788899999999999999999999875432 11111111134455566643 4577888889999998865 7788


Q ss_pred             HHHHhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      ..+.+.++++.|+.+|+..  ...++.+++.+++-++.+.+ ........+.|+.|+++++....+.+.|-++.+|.|+.
T Consensus       179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll  257 (429)
T cd00256         179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI  257 (429)
T ss_pred             HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            8898999999999999863  46889999999999997744 44556678999999999998888999999999999999


Q ss_pred             hCCCCC---C--CHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHH-------hccC--------------Ch-----
Q psy9169         231 RNKNPA---P--DFEKIKICLPLLNQLIHT---TDVETLSDICWALSY-------ISDG--------------HN-----  276 (440)
Q Consensus       231 ~~~~~~---~--~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~-------l~~~--------------~~-----  276 (440)
                      ......   .  ....+...++.++..|..   .|+++..+.-..-..       ++..              ++     
T Consensus       258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se  337 (429)
T cd00256         258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE  337 (429)
T ss_pred             hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc
Confidence            754211   1  111223233444444432   576665444332221       1210              01     


Q ss_pred             ----hhHHHHHhc--CChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHH
Q psy9169         277 ----DKIQAVVDT--GVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA  349 (440)
Q Consensus       277 ----~~~~~l~~~--g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~  349 (440)
                          +....+-+.  .++..|+++|. +.++.+..-||.=||.++...|.....+-+.|+=..++.+|.+++++++++|.
T Consensus       338 ~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL  417 (429)
T cd00256         338 KFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL  417 (429)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence                222333333  46788999994 55778888999999999999998888888899999999999999999999999


Q ss_pred             HHHHHHhcC
Q psy9169         350 WTISNITAG  358 (440)
Q Consensus       350 ~~L~nl~~~  358 (440)
                      .|+.-+..+
T Consensus       418 ~avQklm~~  426 (429)
T cd00256         418 LAVQKLMVH  426 (429)
T ss_pred             HHHHHHHHh
Confidence            999987643

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.25  E-value=1.6e-08  Score=104.12  Aligned_cols=265  Identities=10%  Similarity=0.073  Sum_probs=191.5

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ...++.+++.+.++|.+.+......+.+++...+  .. .+   -+++.|.+-+.+++|.+|-.|+++|++|-.  ++..
T Consensus        67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~p--el-al---LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~  138 (746)
T PTZ00429         67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQP--EK-AL---LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVL  138 (746)
T ss_pred             hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCh--HH-HH---HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHH
Confidence            3567889999999999999998888887754332  11 11   157888888999999999999999999864  3333


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      +     -+++.+.+.+.+.++.||..|+.++.++...++.   .+...+.++.|..++.+.+ +.++.+|+.+|..++..
T Consensus       139 e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        139 E-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDY  209 (746)
T ss_pred             H-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHh
Confidence            2     2456788889999999999999999999876553   3445678899999887655 89999999999999876


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                      . + ..+......+..+...+...++..+...+.+|......++...     ..++..+...|+|.++.|...|++++.+
T Consensus       210 ~-~-~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~  282 (746)
T PTZ00429        210 G-S-EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVAN  282 (746)
T ss_pred             C-c-hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            4 2 2344456667777777777788888888888866443222221     2458888899999999999999999999


Q ss_pred             hhcCC-hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHH
Q psy9169         313 IATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI  363 (440)
Q Consensus       313 l~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~  363 (440)
                      +.... +.....+.. .+-..++.++ ++++.++..+...|.-++...+...
T Consensus       283 l~~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P~lf  332 (746)
T PTZ00429        283 LASRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALLVIFPNLL  332 (746)
T ss_pred             hcCcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCHHHH
Confidence            87543 222222221 1335555554 4567788777777766666555433

>KOG2171|consensus

Probab=99.25  E-value=1.1e-08  Score=105.68  Aligned_cols=316  Identities=16%  Similarity=0.178  Sum_probs=222.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc----cCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL----DDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL----~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      +.+.+.+.+++..++..|++++...+...++.....-.-...+|.++..+    ..++.+.-..++.+|..++...+...
T Consensus       162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l  241 (1075)
T KOG2171|consen  162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL  241 (1075)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence            33445556666559999998888776544311111111134666666655    55666777888999999988777665


Q ss_pred             HHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHH--HhcCChHHHHhhhCCCCc-------------
Q psy9169         153 MTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLL--LGLGTMPQILALVQPNTP-------------  215 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i--~~~g~i~~L~~ll~~~~~-------------  215 (440)
                      ...+. .++..-+....+.+  ..+|..|+.+|..++...|...+..  +-...++.++.++....+             
T Consensus       242 ~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded  320 (1075)
T KOG2171|consen  242 RPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDED  320 (1075)
T ss_pred             HHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccc
Confidence            54442 46666667776654  7899999999999997744433222  233456666766652110             


Q ss_pred             --HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169         216 --TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE  293 (440)
Q Consensus       216 --~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~  293 (440)
                        ..--+.+..+|-.++.+-++.   .....+++.+-.++.+.+..-+.+++.+|+.++.+..+.+...+ ..+++.++.
T Consensus       321 ~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~  396 (1075)
T KOG2171|consen  321 DEETPYRAAEQALDRLALHLGGK---QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLN  396 (1075)
T ss_pred             cccCcHHHHHHHHHHHHhcCChh---hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHh
Confidence              123456677777777765322   23456778888889999999999999999999999886655433 367888889


Q ss_pred             hccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcC-ChHHHHHHhhcCc
Q psy9169         294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAG-NSRQIDHVIQEGE  371 (440)
Q Consensus       294 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~-~~~~~~~~i~~~~  371 (440)
                      .|.++++.||..||.++|.+++.-....+.-...-+++.|+..+.+. ++.++..|+-++-|.... ..+.+...++   
T Consensus       397 ~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd---  473 (1075)
T KOG2171|consen  397 GLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD---  473 (1075)
T ss_pred             hcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH---
Confidence            99999999999999999999987666666666667888999999876 579999999999999976 4444444443   


Q ss_pred             chHHHHHHHHcCcHH-HHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         372 LNQMALLVEESGGLE-KLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       372 ~~~~~~~l~~~g~l~-~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                            .+     ++ ++..|..++.+.|++.+...|....
T Consensus       474 ------~l-----m~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  474 ------GL-----MEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             ------HH-----HHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence                  22     22 6677888889999999888887653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.23  E-value=9.1e-10  Score=112.07  Aligned_cols=259  Identities=19%  Similarity=0.231  Sum_probs=199.2

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ....+.+++++.+.|...+.-+-..+..+...++    +.++-  ++..+.+-|.++++.++..|+.+|++++.  ++..
T Consensus        41 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----~~~~l--~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~  112 (526)
T PF01602_consen   41 SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP----ELLIL--IINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMA  112 (526)
T ss_dssp             GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH----HHHHH--HHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHH
T ss_pred             chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch----hHHHH--HHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchh
Confidence            4678999999999999999988888877654332    21111  57788888889999999999999999983  4443


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      +.     +++.+.+++.++++.||..|+.++..+....|..   +-.. .++.+..++.+.+ +.++..|+.++..+ ..
T Consensus       113 ~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~  181 (526)
T PF01602_consen  113 EP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KC  181 (526)
T ss_dssp             HH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HC
T ss_pred             hH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-cc
Confidence            33     5788999999999999999999999998665543   2222 5888999996666 89999999999999 22


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                      . +.........+++.|..++...++..+..++..+..++...+.....   ..+++.+..++.+.++.|...|+.++..
T Consensus       182 ~-~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~  257 (526)
T PF01602_consen  182 N-DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIK  257 (526)
T ss_dssp             T-HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            2 11101345566677777778899999999999999998776655321   3468889999998889999999999998


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS  360 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  360 (440)
                      +....+      .-..+++.|..++.++++.++..++.+|..++...+
T Consensus       258 l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~  299 (526)
T PF01602_consen  258 LSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP  299 (526)
T ss_dssp             HSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred             hhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence            765443      222478889999999899999999999999987663

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023|consensus

Probab=99.22  E-value=4e-10  Score=109.16  Aligned_cols=275  Identities=19%  Similarity=0.181  Sum_probs=186.2

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHh----cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN----ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR  192 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~----~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  192 (440)
                      .++|.|.++|.+++...++-|..+|..|+.++++.-+.-..    .-.+|.++.+.+++++.+|..|+.++..+.-..+.
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q  207 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ  207 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence            57999999999999999999999999999887654432111    13689999999999999999999999888755433


Q ss_pred             hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169         193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS  272 (440)
Q Consensus       193 ~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~  272 (440)
                      .- ...-...++.+..+- ++.++++++++|.++..|..-. +..-.....+++..+++..++.|+++...||.....++
T Consensus       208 al-~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a  284 (885)
T KOG2023|consen  208 AL-YVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA  284 (885)
T ss_pred             HH-HHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence            21 111123445555544 5556999999999999998765 33333445677777777778888888888887777666


Q ss_pred             cCChh---------------------------------------------------------------------------
Q psy9169         273 DGHND---------------------------------------------------------------------------  277 (440)
Q Consensus       273 ~~~~~---------------------------------------------------------------------------  277 (440)
                      ..+.-                                                                           
T Consensus       285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD  364 (885)
T KOG2023|consen  285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD  364 (885)
T ss_pred             cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence            42100                                                                           


Q ss_pred             ----------------hHHHHHhcCC----hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc--CCHHHHHH
Q psy9169         278 ----------------KIQAVVDTGV----VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQKMKK  335 (440)
Q Consensus       278 ----------------~~~~l~~~g~----~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~--g~l~~L~~  335 (440)
                                      ....+....+    +|.|-+.|.+....+++.++.++|.|+.|.-.   -++..  -++|.|+.
T Consensus       365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~  441 (885)
T KOG2023|consen  365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLS  441 (885)
T ss_pred             ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHH
Confidence                            0001111123    34444445666777888888888888876422   22221  26899999


Q ss_pred             HhcCCChhHHHHHHHHHHHHhcCCh-HHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         336 LLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       336 ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                      +|.+..+-+|...||+|+..+.--. +..+.        -+...      ++.|..-+-..|..|++.|+.+..++=
T Consensus       442 ~L~DKkplVRsITCWTLsRys~wv~~~~~~~--------~f~pv------L~~ll~~llD~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  442 LLDDKKPLVRSITCWTLSRYSKWVVQDSRDE--------YFKPV------LEGLLRRLLDSNKKVQEAACSAFATLE  504 (885)
T ss_pred             HhccCccceeeeeeeeHhhhhhhHhcCChHh--------hhHHH------HHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999998764200 00000        11111      233444455779999999999998883

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.20  E-value=5.9e-09  Score=111.71  Aligned_cols=229  Identities=14%  Similarity=0.160  Sum_probs=155.6

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc----
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS----  149 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~----  149 (440)
                      ..++.|+..|.++++.++..|+..|..+.....           ..+.|...|.++++.+|..|+.+|..+..+..    
T Consensus       652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~  720 (897)
T PRK13800        652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-----------PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFA  720 (897)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHH
Confidence            457889999999999999999999887632111           12334444444555555555555544421110    


Q ss_pred             --------HHHH----HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH
Q psy9169         150 --------EQTM----TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT  217 (440)
Q Consensus       150 --------~~~~----~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~  217 (440)
                              ..+.    .+...+..+.|..++.++++.||..++.+|+.+....+         ..++.|..++.+.+ ..
T Consensus       721 ~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d-~~  790 (897)
T PRK13800        721 AALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPD-PL  790 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCC-HH
Confidence                    0000    00001122345556666666666666666666643321         23678888887776 89


Q ss_pred             HHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC
Q psy9169         218 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS  297 (440)
Q Consensus       218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~  297 (440)
                      ++..++.+|..+....          .+.+.+...|.++++.++..|+++|+.+...           ..++.|+.+|.+
T Consensus       791 VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D  849 (897)
T PRK13800        791 VRAAALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAGAAAD-----------VAVPALVEALTD  849 (897)
T ss_pred             HHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc-----------chHHHHHHHhcC
Confidence            9999999998885432          1335678888999999999999999887532           236999999999


Q ss_pred             CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q psy9169         298 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN  354 (440)
Q Consensus       298 ~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~n  354 (440)
                      ++..|+..|+++|+.+ .+++         ...+.|...+++.++.|+.+|..+|..
T Consensus       850 ~~~~VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        850 PHLDVRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             CCHHHHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            9999999999999997 2232         235778899999999999999999864

>KOG2759|consensus

Probab=99.17  E-value=3.5e-09  Score=98.06  Aligned_cols=279  Identities=14%  Similarity=0.156  Sum_probs=203.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCC-HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGV-VPICVELL-DDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~-i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .+..+.+|..+|.-.+..+.+.+.++.+.... .... .+-.+ ...|-..+ ++.+++...-|++||..+... ++.|.
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~-~~~~-~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~  192 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC-KMEL-SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY  192 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc-cccc-hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence            67788899999998888899999988765542 1111 01111 22333344 447778888899999999866 77899


Q ss_pred             HHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         154 TVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                      .++..+++..++..+.+  .+..++.+.+.+++-+.-+.+.+ ..+...+.|+.|..+++++..+.+.+-++.++.|++.
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~  271 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD  271 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999953  33788999999999999874444 6667889999999999999889999999999999997


Q ss_pred             CCCCCCCHH-----HHhhHHHHHHHhhc---CCCHHHHHHHHHHHHHhcc-------C--------------Ch------
Q psy9169         232 NKNPAPDFE-----KIKICLPLLNQLIH---TTDVETLSDICWALSYISD-------G--------------HN------  276 (440)
Q Consensus       232 ~~~~~~~~~-----~~~~~~~~L~~ll~---~~d~~i~~~a~~~L~~l~~-------~--------------~~------  276 (440)
                      ..+......     ....-++..++.|.   -+|+++..+.-..-..|-.       .              ++      
T Consensus       272 k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~  351 (442)
T KOG2759|consen  272 KGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK  351 (442)
T ss_pred             cCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence            762211111     11222344444443   2566666554443333221       1              00      


Q ss_pred             ---hhHHHHHhc--CChHHHHHhccCC-ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHH
Q psy9169         277 ---DKIQAVVDT--GVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW  350 (440)
Q Consensus       277 ---~~~~~l~~~--g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~  350 (440)
                         +....+.+.  .++..|+++|..+ +|.+..-||.=||..+...|+....+.+.|+=+.+++++.+++++|+.+|..
T Consensus       352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALl  431 (442)
T KOG2759|consen  352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALL  431 (442)
T ss_pred             hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHH
Confidence               222233332  4789999999765 4788889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q psy9169         351 TISNITAG  358 (440)
Q Consensus       351 ~L~nl~~~  358 (440)
                      |+.-+..+
T Consensus       432 avQ~lm~~  439 (442)
T KOG2759|consen  432 AVQKLMVH  439 (442)
T ss_pred             HHHHHHhh
Confidence            99887654

>KOG2160|consensus

Probab=99.17  E-value=3.3e-09  Score=96.93  Aligned_cols=188  Identities=18%  Similarity=0.219  Sum_probs=156.5

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHH
Q psy9169          84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPK  163 (440)
Q Consensus        84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~  163 (440)
                      .+.+.+.+..|+..|..++..  -++...++..|++.+++.++.+.++.+|..|+|+++.++..+|.....+++.|+++.
T Consensus        93 ~s~~le~ke~ald~Le~lve~--iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~  170 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVED--IDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSK  170 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHh--hhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHH
Confidence            467788899999999877642  245688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC-CcHHHHHHHHHHHHhhhhCCCCCCCHHH
Q psy9169         164 FLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-TPTTFLRNIVWAISNLCRNKNPAPDFEK  241 (440)
Q Consensus       164 L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~  241 (440)
                      |+..|.+.+ ..++..|+.+++.+..+.+...+.+...++...|..++.+. .+..+++.++..+..+............
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            999999755 67889999999999999999999999999999999999974 4689999999999999987644444333


Q ss_pred             HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169         242 IKICLPLLNQLIHTTDVETLSDICWALSYISD  273 (440)
Q Consensus       242 ~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~  273 (440)
                      ..++...+..+....+.++...++.++..+..
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            44555556666667777777777777665553

>KOG2759|consensus

Probab=99.17  E-value=1.5e-08  Score=93.85  Aligned_cols=322  Identities=15%  Similarity=0.093  Sum_probs=224.0

Q ss_pred             CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHH-------HhCCHHHHHHhccCCChHHHHHHHHHHHHHh
Q psy9169          74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELI-------EAGVVPICVELLDDENPNTQFEATWALTNIA  145 (440)
Q Consensus        74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii-------~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla  145 (440)
                      ..+..++.+++. ..++....++..+..+++.++  ....+.       +.-.-+.++.+|...+.-+...+.|++..++
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~--sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDR--SRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCc--hHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            356778888874 346677778888888887664  222222       2245788999998888999998999999998


Q ss_pred             CCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhh-CCCCcHHHHHHHH
Q psy9169         146 SGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV-QPNTPTTFLRNIV  223 (440)
Q Consensus       146 ~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll-~~~~~~~~~~~a~  223 (440)
                      ...+.........=....|-..+++ .+......|+.+|..+... +++|..+....++..++..+ .+..+-.++-..+
T Consensus       143 ~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             HhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            6533321110001112334445555 4466777788899888887 77888888888899999988 4444578888999


Q ss_pred             HHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCh------hhHHHHHhcCChHHHHHhcc
Q psy9169         224 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHN------DKIQAVVDTGVVPRLVELLD  296 (440)
Q Consensus       224 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~------~~~~~l~~~g~~~~Lv~lL~  296 (440)
                      .|+.-|..++ +..+.....+.++.|..++++ ..+.+..-++.++.|+....+      +....++..++.+.+-.+..
T Consensus       222 fciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~  300 (442)
T KOG2759|consen  222 FCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE  300 (442)
T ss_pred             HHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence            9999888776 333334456889999999976 567899999999999998774      44456666665554444432


Q ss_pred             C--CChhHHHHHHHHHHH-------hhc----------C----C---------hHHHHHHHHcC--CHHHHHHHhcCC-C
Q psy9169         297 S--EETTILTAALRTVGN-------IAT----------G----N---------DHQTDCVIQAG--GLQKMKKLLSSS-R  341 (440)
Q Consensus       297 ~--~~~~v~~~al~~L~n-------l~~----------~----~---------~~~~~~l~~~g--~l~~L~~ll~~~-~  341 (440)
                      .  +++++....-+.-..       +++          |    +         .++...+.+.+  ++..|+.+|+.+ +
T Consensus       301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~D  380 (442)
T KOG2759|consen  301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSND  380 (442)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCC
Confidence            2  344433222221111       111          0    1         12333444433  789999999876 4


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         342 VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       342 ~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      |.+-.-||.=++......|+-             ...+++.||-+.+.+|++|+|++|+-.|..++.++..
T Consensus       381 p~iL~VAc~DIge~Vr~yP~g-------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  381 PIILCVACHDIGEYVRHYPEG-------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             CceeehhhhhHHHHHHhCchH-------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            888888999999999877654             6788999999999999999999999999999988764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.17  E-value=2.8e-09  Score=108.55  Aligned_cols=309  Identities=20%  Similarity=0.225  Sum_probs=176.7

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.+.+.|.++++..+..|++++.++..       ..+++. +++.+..++.+++|.+|..|+.++..+....++.  
T Consensus        79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-------~~~~~~-l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~--  148 (526)
T PF01602_consen   79 LIINSLQKDLNSPNPYIRGLALRTLSNIRT-------PEMAEP-LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL--  148 (526)
T ss_dssp             HHHHHHHHHHCSSSHHHHHHHHHHHHHH-S-------HHHHHH-HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC--
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHhhhhhhcc-------cchhhH-HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH--
Confidence            355666666666677777777776666531       122222 4566666666666666666666666665443332  


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh----------------------------------------hCCCchh
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNI----------------------------------------AGDGARA  193 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl----------------------------------------~~~~~~~  193 (440)
                       +... .++.+..+|.++++.++..|+.++..+                                        +...+..
T Consensus       149 -~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~  226 (526)
T PF01602_consen  149 -VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED  226 (526)
T ss_dssp             -HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred             -HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence             1122 456666666666666666666666666                                        3222211


Q ss_pred             HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169         194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD  273 (440)
Q Consensus       194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~  273 (440)
                      ...   ..+++.+..++.+.. ..++-.++.++..+....      .....+++.|..++.+.++.++..++.+|..++.
T Consensus       227 ~~~---~~~i~~l~~~l~s~~-~~V~~e~~~~i~~l~~~~------~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~  296 (526)
T PF01602_consen  227 ADK---NRIIEPLLNLLQSSS-PSVVYEAIRLIIKLSPSP------ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ  296 (526)
T ss_dssp             HHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSH------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred             hhH---HHHHHHHHHHhhccc-cHHHHHHHHHHHHhhcch------HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence            100   123334444443222 455555555555544332      2567788888888888888888888888888887


Q ss_pred             CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHh-cCCChhHHHHHHHHH
Q psy9169         274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL-SSSRVNIVKEAAWTI  352 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll-~~~~~~i~~~a~~~L  352 (440)
                      .....    +. .....+..+..+++..++..++.+|..++.  +.....     +++.|...+ ..++++++.+++.++
T Consensus       297 ~~~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I  364 (526)
T PF01602_consen  297 SNPPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAI  364 (526)
T ss_dssp             HCHHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred             ccchh----hh-hhhhhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHH
Confidence            66222    21 212223333347778888888888888874  333333     466678878 455788999999999


Q ss_pred             HHHhcCCh----HHHHHHhh---cCc-------chHHHHHHHHcC-----cHHHHHHHhc-CCcHHHHHHHHHHHHhhCC
Q psy9169         353 SNITAGNS----RQIDHVIQ---EGE-------LNQMALLVEESG-----GLEKLEALQH-HENETVYQKCYKIISMAFN  412 (440)
Q Consensus       353 ~nl~~~~~----~~~~~~i~---~~~-------~~~~~~~l~~~g-----~l~~l~~L~~-~~~~~v~~~a~~il~~~~~  412 (440)
                      +.++...+    ..++.+++   .+.       ...+...+....     .+..+..+.. -.++++...+.+++..|.+
T Consensus       365 ~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~  444 (526)
T PF01602_consen  365 GDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGE  444 (526)
T ss_dssp             HHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred             HHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence            99885322    23333333   111       223334444333     2455555444 5678899999999999876


Q ss_pred             CCcc
Q psy9169         413 DSAE  416 (440)
Q Consensus       413 ~~~~  416 (440)
                      ..++
T Consensus       445 ~~~~  448 (526)
T PF01602_consen  445 LIEN  448 (526)
T ss_dssp             HHTT
T ss_pred             cccc
Confidence            5443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=99.16  E-value=7e-08  Score=99.50  Aligned_cols=254  Identities=13%  Similarity=0.061  Sum_probs=190.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .+..|.+.|++.+...+..|++.+..+.....+.       +.+.+.++.++.+++.+++.-+...|.+++...++..- 
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv-------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-  104 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV-------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-  104 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc-------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-
Confidence            4567888889988888888887666555444311       23567777888889999999999999999876665322 


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                          -++..|.+=+.++++.+|..|+.+|++|-..  ..     ..-+++.+.+.+.+.+ +-+++.|+.++.++.+.. 
T Consensus       105 ----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i-----~e~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~-  171 (746)
T PTZ00429        105 ----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SV-----LEYTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDD-  171 (746)
T ss_pred             ----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HH-----HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhC-
Confidence                2477888899999999999999999998643  11     1124566777776655 899999999999998765 


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      +  +.....++++.|.++|.+.|+.++.+|+.+|..+....+....  ...+.+..|+..|..-++..+...+.+|....
T Consensus       172 p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~  247 (746)
T PTZ00429        172 M--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR  247 (746)
T ss_pred             c--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC
Confidence            2  2334467889999999999999999999999999876554322  33455777888887777777888888886644


Q ss_pred             cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      ..++....     .++..+...|++.++.|.-+|+.++.++...
T Consensus       248 P~~~~e~~-----~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        248 PSDKESAE-----TLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             CCCcHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence            33332222     4567788888899999999999999999854

>KOG1222|consensus

Probab=99.12  E-value=4.1e-08  Score=92.21  Aligned_cols=284  Identities=15%  Similarity=0.144  Sum_probs=197.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH
Q psy9169          87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ  166 (440)
Q Consensus        87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~  166 (440)
                      ...+...|+..+.+++..-+  .-..+...+++..|++.|..++.++.......|..++.. .+++..+.+.|++..|++
T Consensus       276 QeqLLrva~ylLlNlAed~~--~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~k  352 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAEDIS--VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLK  352 (791)
T ss_pred             HHHHHHHHHHHHHHHhhhhh--HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHH
Confidence            34555667788888864322  235677889999999999878889999999999999876 456778888999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH
Q psy9169         167 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL  246 (440)
Q Consensus       167 lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  246 (440)
                      ++...+++++...+..+.|++-+ ...|..++..|.+|.|..++.++...   .-|...++.++.++ ....+.....++
T Consensus       353 lfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD-~~K~MfayTdci  427 (791)
T KOG1222|consen  353 LFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDD-DAKAMFAYTDCI  427 (791)
T ss_pred             hcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCc-HHHHHHHHHHHH
Confidence            99999999999999999999988 45678888999999999999876632   33555666777665 445556667788


Q ss_pred             HHHHHhh-cCCCHHHHHHHHHHHHHhc--------------------------------------cCChhhHHHHHhcCC
Q psy9169         247 PLLNQLI-HTTDVETLSDICWALSYIS--------------------------------------DGHNDKIQAVVDTGV  287 (440)
Q Consensus       247 ~~L~~ll-~~~d~~i~~~a~~~L~~l~--------------------------------------~~~~~~~~~l~~~g~  287 (440)
                      +.+.+.+ ...+.++-.+.+..-.|+|                                      .+.......+++  .
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--y  505 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFID--Y  505 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHH--H
Confidence            8776554 3344444333332223333                                      222222122221  2


Q ss_pred             hHHHHHhccCC-ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhcCChHHHH
Q psy9169         288 VPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQID  364 (440)
Q Consensus       288 ~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~  364 (440)
                      +..|...++.. +.....+++.+++|+...+-...+.+-+.+++|++...|..+  ..+++-+...+++-++...     
T Consensus       506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~-----  580 (791)
T KOG1222|consen  506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDL-----  580 (791)
T ss_pred             HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhh-----
Confidence            44455555443 456778899999999987777888888899999999999865  3456666666666655321     


Q ss_pred             HHhhcCcchHHHHHHHHcCcHHHHHHHhcC
Q psy9169         365 HVIQEGELNQMALLVEESGGLEKLEALQHH  394 (440)
Q Consensus       365 ~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~  394 (440)
                               ..+.++...|.++.+..|+..
T Consensus       581 ---------~cA~Lla~a~~i~tlieLL~a  601 (791)
T KOG1222|consen  581 ---------DCARLLAPAKLIDTLIELLQA  601 (791)
T ss_pred             ---------HHHHHhCccccHHHHHHHHHh
Confidence                     224455556666666665543

>KOG2160|consensus

Probab=99.10  E-value=6.5e-09  Score=95.07  Aligned_cols=188  Identities=18%  Similarity=0.277  Sum_probs=155.9

Q ss_pred             cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHH
Q psy9169         127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI  206 (440)
Q Consensus       127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L  206 (440)
                      .+.+++-+..|+--|-.++. +-++...++..|+...++.++.+.+..+|+.|+|+|+..+.++|..+..+++.|+++.|
T Consensus        93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            45566777888888888874 36677889999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169         207 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKIQAVVD  284 (440)
Q Consensus       207 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~~~~~~l~~  284 (440)
                      +.++..+++..++..|+.+++.+.++..+.............|...+.+  .+...+..++..+.++..........+-.
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999988888999999999999999986666666566668899999987  67888999999999999777655455455


Q ss_pred             cCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         285 TGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      .+....+..+....+.++...++.++..+..
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            5666666666666677788888777665543

>KOG2171|consensus

Probab=99.08  E-value=9.3e-08  Score=98.90  Aligned_cols=317  Identities=16%  Similarity=0.091  Sum_probs=210.6

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc---HH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS---EQ  151 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~---~~  151 (440)
                      .++.|++..+|+++..|..|+..|..+...-.+.....+  ..+.+.|.+.+.+++..++..|+.+++.++...+   ..
T Consensus       119 ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~  196 (1075)
T KOG2171|consen  119 LLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE  196 (1075)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence            345556666799999999999999877543222211111  1245666677755555599999999999987653   22


Q ss_pred             HHHHHhcCCHHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC-cHHHHHHHHHHH
Q psy9169         152 TMTVINANAIPKFLQLL----SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAI  226 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L  226 (440)
                      ...+.  ..+|.++..+    ..++.+....++.+|..++...+.+-...+. .++...+.+..+.. +..++..|+.+|
T Consensus       197 ~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  197 VDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            22332  3455555544    4566777788899999998766654333221 35566666666443 678899999999


Q ss_pred             HhhhhCCCCC---CCHHHHhhHHHHHHHhhcC--CC--------------HHHHHHHHHHHHHhccCChhhHHHHHhcCC
Q psy9169         227 SNLCRNKNPA---PDFEKIKICLPLLNQLIHT--TD--------------VETLSDICWALSYISDGHNDKIQAVVDTGV  287 (440)
Q Consensus       227 ~~l~~~~~~~---~~~~~~~~~~~~L~~ll~~--~d--------------~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~  287 (440)
                      ..++... |.   ........+++.+..++..  .|              ...-..|..+|-.++.+-+..   .+-.-+
T Consensus       274 vs~~e~A-p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~  349 (1075)
T KOG2171|consen  274 VSLSEYA-PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPL  349 (1075)
T ss_pred             HHHHHhh-HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHH
Confidence            8888772 11   1112445667777766632  11              123456677777777654422   111234


Q ss_pred             hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169         288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI  367 (440)
Q Consensus       288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i  367 (440)
                      ++.+-.+|.++++.-|.+|+.+|+.++.|..+.....++ .+++.++..+.+++|.||..||.+++.++..=...++.  
T Consensus       350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk--  426 (1075)
T KOG2171|consen  350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK--  426 (1075)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH--
Confidence            667777889999999999999999999999888777665 58999999999999999999999999999763332221  


Q ss_pred             hcCcchHHHHHHHHcCcHHHHHH-HhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169         368 QEGELNQMALLVEESGGLEKLEA-LQHHENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       368 ~~~~~~~~~~~l~~~g~l~~l~~-L~~~~~~~v~~~a~~il~~~~~~~  414 (440)
                            .+...     .++.|.. +-..+++.|+..|...+-.|+++-
T Consensus       427 ------~~~e~-----l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~  463 (1075)
T KOG2171|consen  427 ------KHHER-----LPPALIALLDSTQNVRVQAHAAAALVNFSEEC  463 (1075)
T ss_pred             ------HHHHh-----ccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence                  11222     2334444 444558899999999998887643

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.06  E-value=6.9e-09  Score=97.75  Aligned_cols=232  Identities=15%  Similarity=0.162  Sum_probs=163.3

Q ss_pred             HHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh------cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         161 IPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLG------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       161 i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      ...++.+|..  .+.++....+..+..+..+.+...+.+..      .....++++++.+++ ..+...++..|..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHHc
Confidence            4455555553  56899999999999999888876666654      236788888777775 88999999999999988


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc------cC-CChh
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIH----TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL------DS-EETT  301 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~----~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL------~~-~~~~  301 (440)
                      .+. .......+.++.++..+.    +++.+.+..++.++..|..... ....+.+.|+++.+..+|      .+ ....
T Consensus       136 ~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q  213 (312)
T PF03224_consen  136 GPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQ  213 (312)
T ss_dssp             TTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred             CCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence            733 333323556666666654    3556778999999999986555 458888899999999999      22 2457


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHH
Q psy9169         302 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVE  380 (440)
Q Consensus       302 v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~  380 (440)
                      ++..++.|++-++.. ++....+...++++.|.+++... .+.+.+-+..++.|++....+.            +...+-
T Consensus       214 l~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~------------~~~~mv  280 (312)
T PF03224_consen  214 LQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS------------NIELMV  280 (312)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT------------HHHHHH
T ss_pred             HHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH------------HHHHHH
Confidence            888999999988764 45677788889999999999854 6789999999999999866532            356667


Q ss_pred             HcCcHHHHHHHhcCC--cHHHHHHHHHHHH
Q psy9169         381 ESGGLEKLEALQHHE--NETVYQKCYKIIS  408 (440)
Q Consensus       381 ~~g~l~~l~~L~~~~--~~~v~~~a~~il~  408 (440)
                      .+|++..+..|...+  ++|+++--..+-+
T Consensus       281 ~~~~l~~l~~L~~rk~~Dedl~edl~~L~e  310 (312)
T PF03224_consen  281 LCGLLKTLQNLSERKWSDEDLTEDLEFLKE  310 (312)
T ss_dssp             HH-HHHHHHHHHSS--SSHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            788899999887754  7888776655544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1293|consensus

Probab=99.05  E-value=2e-08  Score=97.74  Aligned_cols=232  Identities=14%  Similarity=0.103  Sum_probs=181.5

Q ss_pred             cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChH
Q psy9169         127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMP  204 (440)
Q Consensus       127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~  204 (440)
                      .+.+|+....+..-..|.+.+.+.....+++.|+++.|+.+++..+  .+...+.+.+++..+.......+.++..+.++
T Consensus        19 ~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll   98 (678)
T KOG1293|consen   19 LHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL   98 (678)
T ss_pred             hcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence            4567787888889999999998988889999999999999998766  66776677777777766666778888999999


Q ss_pred             HHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC--HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHH
Q psy9169         205 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV  282 (440)
Q Consensus       205 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l  282 (440)
                      .|+.++.+.++..++.....++.++.......+.  ......+++.+..++..+...+...-+....+++... +....+
T Consensus        99 ~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il  177 (678)
T KOG1293|consen   99 KLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLIL  177 (678)
T ss_pred             HHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhhee
Confidence            9999999887788999999999999977632222  2233566777666666455556666666666676655 444677


Q ss_pred             HhcCChHHHHHhccCCChhHHHHHHHHHH---HhhcCChHHHHH----HHHcCCHH--HHHHHhcCCChhHHHHHHHHHH
Q psy9169         283 VDTGVVPRLVELLDSEETTILTAALRTVG---NIATGNDHQTDC----VIQAGGLQ--KMKKLLSSSRVNIVKEAAWTIS  353 (440)
Q Consensus       283 ~~~g~~~~Lv~lL~~~~~~v~~~al~~L~---nl~~~~~~~~~~----l~~~g~l~--~L~~ll~~~~~~i~~~a~~~L~  353 (440)
                      .++|+.+.+.-++.+.+...+..|+.+++   ++..+++.....    +.+.|+.+  .+..++.+++...+-.++.++.
T Consensus       178 ~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~  257 (678)
T KOG1293|consen  178 CNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLV  257 (678)
T ss_pred             ccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHH
Confidence            88899999999999888899999999999   888887765543    34556666  5677888888888889999999


Q ss_pred             HHhcCC
Q psy9169         354 NITAGN  359 (440)
Q Consensus       354 nl~~~~  359 (440)
                      ++..++
T Consensus       258 ~~~~~s  263 (678)
T KOG1293|consen  258 PYLRKS  263 (678)
T ss_pred             HHHhcc
Confidence            888765

>KOG0168|consensus

Probab=99.03  E-value=4.9e-08  Score=97.39  Aligned_cols=293  Identities=14%  Similarity=0.157  Sum_probs=211.2

Q ss_pred             HHHHHHhc-cCCChHHHHHHHHHHHHH-hCCCcHHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHH
Q psy9169         119 VPICVELL-DDENPNTQFEATWALTNI-ASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARD  195 (440)
Q Consensus       119 i~~Lv~lL-~~~~~~i~~~a~~~L~nl-a~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~  195 (440)
                      +..|+.-| ...++..|.+|+.-|+.+ ..++.+...-+--.-.+|.|+.+|+..+ .++.-+|+.+|.+++.--|.-..
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            45555556 344888888888877765 4455555444444568999999999865 99999999999999988888778


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH  275 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~  275 (440)
                      .++.+++||.|+.-|..-.-..+.+.++.+|-.|++..   +......+.+...+..|.--...++..|+.+..|+|..-
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI  325 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88999999999988876555789999999999999876   334556788888888887767789999999999999542


Q ss_pred             -hhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHHHHhcCCC----hhHHHH
Q psy9169         276 -NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSR----VNIVKE  347 (440)
Q Consensus       276 -~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~~~~----~~i~~~  347 (440)
                       ++....++  ..+|.|..+|++.+....+.++.|+..++.   ..++..+.+...|++.-..+++.-..    ..+...
T Consensus       326 ~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  326 RSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             CCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence             23334444  459999999999999999999999999985   45667788999999999999997543    245666


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCc--HHHHHHHhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169         348 AAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGG--LEKLEALQHHENETVYQKCYKIISMAFNDSAE  416 (440)
Q Consensus       348 a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~--l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~  416 (440)
                      ...+|+-++.+++.....++.++....+...+.-.+.  -.-+..++.....++++...-+++-++..+.+
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e  474 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVE  474 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCccc
Confidence            7888999999887664444443333333222222110  11122223333456777777777766655444

>KOG1241|consensus

Probab=99.02  E-value=1.2e-08  Score=100.56  Aligned_cols=276  Identities=14%  Similarity=0.155  Sum_probs=190.5

Q ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          77 PEMIEGMK--SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        77 ~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      -.++....  .++..+++.|+.+|.+-+-..+.-.-.+.-..=++...++...+++.+++..|+.||..|.+-..+....
T Consensus       175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~  254 (859)
T KOG1241|consen  175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP  254 (859)
T ss_pred             HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444  3567788999998887764332100111111223445556668899999999999999999887777777


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----------------hHHH--HHhcCChHHHHhhhCCCC--
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR----------------ARDL--LLGLGTMPQILALVQPNT--  214 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----------------~r~~--i~~~g~i~~L~~ll~~~~--  214 (440)
                      .+....+..-+.-+++++++|.-+++...+++|...-+                ....  -.-.+++|.|+++|.+.+  
T Consensus       255 yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~  334 (859)
T KOG1241|consen  255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED  334 (859)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence            77777888888889999999999999999999843211                0000  012357888888887422  


Q ss_pred             ----cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy9169         215 ----PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR  290 (440)
Q Consensus       215 ----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~  290 (440)
                          +=..-..+..||.-+++....    .++..++|.+-+-++++|..-+..+..+++.+..+.....-.-+-.+++|.
T Consensus       335 ~d~DdWnp~kAAg~CL~l~A~~~~D----~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~  410 (859)
T KOG1241|consen  335 DDDDDWNPAKAAGVCLMLFAQCVGD----DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS  410 (859)
T ss_pred             cccccCcHHHHHHHHHHHHHHHhcc----cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence                112333444444444433211    134578888888889999999999999999999888766555555788999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhhcCChHHHH-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         291 LVELLDSEETTILTAALRTVGNIATGNDHQTD-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       291 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~-~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ++.++.+++-.++..+.|++|.++...++.+. ...-.+.++.++.-|. ..|.+...+||++.+++.
T Consensus       411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae  477 (859)
T KOG1241|consen  411 IINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE  477 (859)
T ss_pred             HHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence            99999988888999999999999976654322 1122234555555443 368899999999999993

>KOG0946|consensus

Probab=99.00  E-value=2.8e-07  Score=91.54  Aligned_cols=335  Identities=16%  Similarity=0.173  Sum_probs=239.2

Q ss_pred             ccCCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCC
Q psy9169          72 IKMTVPEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGT  148 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~  148 (440)
                      ..++|+.|++.+.+.. .+.|..|++.|..+..    . ....+-..++++|+..|  ...++++...++-++.++.+..
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr----k-YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d   94 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----K-YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD   94 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH----H-HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence            4578999999998655 7889999999986632    1 24444556689999999  5578999999999999998764


Q ss_pred             c------HH----------HHH-HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHh-cCChHHHHhh
Q psy9169         149 S------EQ----------TMT-VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLG-LGTMPQILAL  209 (440)
Q Consensus       149 ~------~~----------~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~-~g~i~~L~~l  209 (440)
                      .      +.          .+. +-..+.|..|+..+...+-.||..++..|.++.... .+.++.++. ..+|..|+.+
T Consensus        95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence            2      11          222 335678999999999999999999999999988554 457777764 4689999999


Q ss_pred             hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCC---CH-HHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169         210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT---DV-ETLSDICWALSYISDGHNDKIQAVVDT  285 (440)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~---d~-~i~~~a~~~L~~l~~~~~~~~~~l~~~  285 (440)
                      |.+.. ..++..++..|..|.++.......+....++..|..++..+   |. -|..+|+..+-+|...+....+.+.+.
T Consensus       175 L~Dsr-E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~  253 (970)
T KOG0946|consen  175 LRDSR-EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG  253 (970)
T ss_pred             Hhhhh-hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence            98777 77888999999999998744445556688999999999642   33 578889999999998888887899999


Q ss_pred             CChHHHHHhccCC---Ch--------h--HHHHHHHHHHHhhcC-Ch-----HHHHHHHHcCCHHHHHHHhcCCC--hhH
Q psy9169         286 GVVPRLVELLDSE---ET--------T--ILTAALRTVGNIATG-ND-----HQTDCVIQAGGLQKMKKLLSSSR--VNI  344 (440)
Q Consensus       286 g~~~~Lv~lL~~~---~~--------~--v~~~al~~L~nl~~~-~~-----~~~~~l~~~g~l~~L~~ll~~~~--~~i  344 (440)
                      +.+|+|.++|.-.   +.        .  -...++.++..++.. +.     .....+..++++..|..++-++.  .+|
T Consensus       254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI  333 (970)
T KOG0946|consen  254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI  333 (970)
T ss_pred             ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence            9999999888532   21        1  123466666666642 21     23346778899999999998873  489


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHhhcC---cchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhCCCCcccc
Q psy9169         345 VKEAAWTISNITAGNSRQIDHVIQEG---ELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSAENS  418 (440)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~i~~~---~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~~~~  418 (440)
                      +.++.-+++++..|+...-..+.+..   ..++...      .+-.+..+..+. ....+=.+..++..|+.+.++..
T Consensus       334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~s------ivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq  405 (970)
T KOG0946|consen  334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPS------IVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ  405 (970)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccc------hhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence            99999999999998765544443311   0110000      011122233333 44556666677777776555443

>KOG2023|consensus

Probab=98.99  E-value=9.3e-08  Score=93.15  Aligned_cols=271  Identities=18%  Similarity=0.229  Sum_probs=179.5

Q ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      .+..+|.+++..+++++..|-.|+.++-..+-... .....-+ ...+..+..+-.+.+|++|...+.+|.-+..-.++.
T Consensus       172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~-qal~~~i-D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dk  249 (885)
T KOG2023|consen  172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT-QALYVHI-DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDK  249 (885)
T ss_pred             hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc-HHHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence            45678999999999999999999999876654332 2111111 234555555558899999999999999997543332


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHhhhCCCC-cHH-----------
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LGTMPQILALVQPNT-PTT-----------  217 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~L~~ll~~~~-~~~-----------  217 (440)
                      .. ---.++++.+++.-++.+++|.-.|+.....+|.. +.+++.+..  ..++|.|++-+..++ +..           
T Consensus       250 l~-phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v  327 (885)
T KOG2023|consen  250 LV-PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV  327 (885)
T ss_pred             cc-cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence            11 11136788888888899999999999999999977 456555542  346777765554221 111           


Q ss_pred             -------------------------------------------HHH---HHHHHHHhhhhCCCCCCCHHHHhhHHHHHHH
Q psy9169         218 -------------------------------------------FLR---NIVWAISNLCRNKNPAPDFEKIKICLPLLNQ  251 (440)
Q Consensus       218 -------------------------------------------~~~---~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  251 (440)
                                                                 +++   .++..|+|+...       ....-++|.|-+
T Consensus       328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~-------elL~~l~PlLk~  400 (885)
T KOG2023|consen  328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD-------ELLPILLPLLKE  400 (885)
T ss_pred             CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH-------HHHHHHHHHHHH
Confidence                                                       111   122222332222       123445666667


Q ss_pred             hhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--CChHHHHHhccCCChhHHHHHHHHHHHhhcC--ChHHHHHHHHc
Q psy9169         252 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVELLDSEETTILTAALRTVGNIATG--NDHQTDCVIQA  327 (440)
Q Consensus       252 ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~--g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~--~~~~~~~l~~~  327 (440)
                      .|.+++..+++++..+++.++.+-.   +-++.+  .++|.|+.+|.+..+-||.-+||+|+..+..  .+...+.+.  
T Consensus       401 ~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--  475 (885)
T KOG2023|consen  401 HLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--  475 (885)
T ss_pred             HcCcchhhhhhhhHHHHHHHHHHHh---hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--
Confidence            7778888999999999999997643   333333  4689999999999999999999999987641  111112121  


Q ss_pred             CCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         328 GGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       328 g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      .++..|++.+-+++..+++.||.++.-+-..
T Consensus       476 pvL~~ll~~llD~NK~VQEAAcsAfAtleE~  506 (885)
T KOG2023|consen  476 PVLEGLLRRLLDSNKKVQEAACSAFATLEEE  506 (885)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            1334444444556788999999988887754

>KOG1517|consensus

Probab=98.92  E-value=1.7e-07  Score=95.54  Aligned_cols=272  Identities=15%  Similarity=0.144  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHh
Q psy9169          88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL  167 (440)
Q Consensus        88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~l  167 (440)
                      ...|+.|...-...-+....||-+       +|.+++.|-+  .--|..|+..|+..-.-.+=....-+.-|+.|.++++
T Consensus       450 FteQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKL  520 (1387)
T KOG1517|consen  450 FTEQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKL  520 (1387)
T ss_pred             HHHHHHHHHHHHHhccccCCChHh-------cchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence            345666666655555555555433       4555555422  2345667777776655445555566677999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC--cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169         168 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--PTTFLRNIVWAISNLCRNKNPAPDFEKIKIC  245 (440)
Q Consensus       168 L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  245 (440)
                      |+++..+++...+.+-..|-.-.+.++..+++.++-...++.+..+.  +.+-+.-++..|+.++++-.-........++
T Consensus       521 LQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~l  600 (1387)
T KOG1517|consen  521 LQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNL  600 (1387)
T ss_pred             hccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccH
Confidence            99999999998888888888776999999999999999999998632  4578888999999999886333333344678


Q ss_pred             HHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC----ChHH
Q psy9169         246 LPLLNQLIHTT-DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG----NDHQ  320 (440)
Q Consensus       246 ~~~L~~ll~~~-d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~----~~~~  320 (440)
                      +......++++ .+-++.-+|-+|+.|-...++..-.=+..++.+.|+.+|.++-++|+.+|+++||.+..+    .+++
T Consensus       601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~  680 (1387)
T KOG1517|consen  601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ  680 (1387)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence            88888888875 577888899999999987776655556778999999999999999999999999999885    3444


Q ss_pred             HHHH------------HHcCCH---HHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh
Q psy9169         321 TDCV------------IQAGGL---QKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ  368 (440)
Q Consensus       321 ~~~l------------~~~g~l---~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~  368 (440)
                      +..+            ++..+.   ..++.+++.+.+-++++.+-+|+.++.|...++..+..
T Consensus       681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~  743 (1387)
T KOG1517|consen  681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG  743 (1387)
T ss_pred             hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh
Confidence            4333            222222   36777788889999999999999999887766655544

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.90  E-value=3.9e-08  Score=92.67  Aligned_cols=231  Identities=13%  Similarity=0.221  Sum_probs=160.4

Q ss_pred             CCHHHHHHhc-cC-CChHHHHHHHHHHHHHhCCCcHHHHHHHh------cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q psy9169         117 GVVPICVELL-DD-ENPNTQFEATWALTNIASGTSEQTMTVIN------ANAIPKFLQLLSSPHLNLAEQATWALGNIAG  188 (440)
Q Consensus       117 g~i~~Lv~lL-~~-~~~~i~~~a~~~L~nla~~~~~~~~~i~~------~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  188 (440)
                      +....++.+| .. +++++...++..+..+....+...+.+..      ......+++++.+++..+...|+.+|..++.
T Consensus        55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~  134 (312)
T PF03224_consen   55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS  134 (312)
T ss_dssp             -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3456666666 34 78899999999999999888876666654      2368889999999999999999999999997


Q ss_pred             CCchhHHHHHhcCChHHHHhhhCCC---CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-----c--CCCH
Q psy9169         189 DGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-----H--TTDV  258 (440)
Q Consensus       189 ~~~~~r~~i~~~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-----~--~~d~  258 (440)
                      .++....... .+.++.+++.+.+.   ++.+++..++.+|.+|.+.+ .........+.++.+..++     .  ..+.
T Consensus       135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred             cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence            7655433321 45667777777642   23567789999999999876 3344444588899999988     2  2456


Q ss_pred             HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHH
Q psy9169         259 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKL  336 (440)
Q Consensus       259 ~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~l  336 (440)
                      +++-.++.+++-|+.... ....+.+.++++.|+++++. ...+|.+-++.++.|++..... ....++..|+++.+-.+
T Consensus       213 Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L  291 (312)
T PF03224_consen  213 QLQYQALLCLWLLSFEPE-IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL  291 (312)
T ss_dssp             HHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHH-HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence            888999999999996554 45778888999999999965 4678999999999999987664 77788888888888777


Q ss_pred             hcCC--ChhHHHHHHH
Q psy9169         337 LSSS--RVNIVKEAAW  350 (440)
Q Consensus       337 l~~~--~~~i~~~a~~  350 (440)
                      ....  |+++....-+
T Consensus       292 ~~rk~~Dedl~edl~~  307 (312)
T PF03224_consen  292 SERKWSDEDLTEDLEF  307 (312)
T ss_dssp             HSS--SSHHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHHH
Confidence            7653  6666655443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3678|consensus

Probab=98.90  E-value=4.4e-07  Score=85.15  Aligned_cols=269  Identities=18%  Similarity=0.184  Sum_probs=186.0

Q ss_pred             ccCCHHHHHHHhcCCCHHH--HHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC
Q psy9169          72 IKMTVPEMIEGMKSSNPKM--RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT  148 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~--~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~  148 (440)
                      ...++..|++++++++.+.  +.+|.+.|..+++..   +.+.++..| +..++.+- ....++.+...+.+|.++..++
T Consensus       178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS  253 (832)
T KOG3678|consen  178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS  253 (832)
T ss_pred             ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence            3467889999999988665  899999999888654   356777766 44444444 4567899999999999999999


Q ss_pred             cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169         149 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS  227 (440)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~  227 (440)
                      .+....++..|++..++...+..++.+..+|+.+|+|++-+. ...+..+++..+-+.|..+-.+. +.-++-++|.++.
T Consensus       254 eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del~R~~AClAV~  332 (832)
T KOG3678|consen  254 EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DELLRLHACLAVA  332 (832)
T ss_pred             HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999543 45566677777777777665555 4778889999999


Q ss_pred             hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169         228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL  307 (440)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al  307 (440)
                      .|+.++ .....+...+.+..+-.++.+.|+.....   --...+.+.        ....+.+|+.+|.+...+.+.-+.
T Consensus       333 vlat~K-E~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~R~EAq~i~A  400 (832)
T KOG3678|consen  333 VLATNK-EVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSNRLEAQCIGA  400 (832)
T ss_pred             hhhhhh-hhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcchhhhhhhHH
Confidence            999887 33333344555554445555555432211   001111111        113478899999876555444333


Q ss_pred             HHHHHhhc--CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         308 RTVGNIAT--GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       308 ~~L~nl~~--~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      +-+.-=++  .-....+.+-+-|+++.|..+.++++..-.+-|..+|.-|..
T Consensus       401 F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  401 FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            32222111  112234556678999999999998887666666667766654

>KOG0946|consensus

Probab=98.85  E-value=3.4e-06  Score=84.06  Aligned_cols=294  Identities=13%  Similarity=0.214  Sum_probs=220.3

Q ss_pred             CCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCC------CCc---------HHHHHH-hCCHHHHHHhccCCChHHHH
Q psy9169          74 MTVPEMIEGMKS--SNPKMRMIATRSARKMLSKER------HPP---------IDELIE-AGVVPICVELLDDENPNTQF  135 (440)
Q Consensus        74 ~~i~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~------~~~---------~~~ii~-~g~i~~Lv~lL~~~~~~i~~  135 (440)
                      .+++.++.-|+.  .|++..-.++..+..+++.+.      ++.         .+.++. .+-|..|+.++...+-.+|.
T Consensus        61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~  140 (970)
T KOG0946|consen   61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL  140 (970)
T ss_pred             cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence            578889999983  578888899999999988763      111         233443 58899999999888899999


Q ss_pred             HHHHHHHHHhCCCc-HHHHHH-HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC
Q psy9169         136 EATWALTNIASGTS-EQTMTV-INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN  213 (440)
Q Consensus       136 ~a~~~L~nla~~~~-~~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~  213 (440)
                      .++..|.++-+.-+ +.+..+ ...-+|..|+.+|.+..+-+|..++..|..+..+++..+..+.-.+++..|..++...
T Consensus       141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE  220 (970)
T KOG0946|consen  141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE  220 (970)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999966544 444444 4567999999999999999999999999999999999999888888999999999843


Q ss_pred             C---cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC---CCH----------HHHHHHHHHHHHhccCC-h
Q psy9169         214 T---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDV----------ETLSDICWALSYISDGH-N  276 (440)
Q Consensus       214 ~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~---~d~----------~i~~~a~~~L~~l~~~~-~  276 (440)
                      .   ..-+...|+..|-||..+......+....+.+|.|.++|..   .|.          .-...++.++..+..-. +
T Consensus       221 Gg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt  300 (970)
T KOG0946|consen  221 GGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNT  300 (970)
T ss_pred             CCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCc
Confidence            2   23578899999999999887777788888999999988853   231          12345566666665321 1


Q ss_pred             -----hhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcC----------CHHHHHHHhcC
Q psy9169         277 -----DKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAG----------GLQKMKKLLSS  339 (440)
Q Consensus       277 -----~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g----------~l~~L~~ll~~  339 (440)
                           .+...+.+.+++..|..++.|+  ..+|+..++.++++.+.|+......+.+..          ++-.++.+..+
T Consensus       301 ~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne  380 (970)
T KOG0946|consen  301 SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNE  380 (970)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhc
Confidence                 2224667789999999999887  357999999999999999987777666521          23334444444


Q ss_pred             C-ChhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169         340 S-RVNIVKEAAWTISNITAGNSRQIDHVI  367 (440)
Q Consensus       340 ~-~~~i~~~a~~~L~nl~~~~~~~~~~~i  367 (440)
                      . .+..|..+.+++......+.+--..++
T Consensus       381 ~q~~~lRcAv~ycf~s~l~dN~~gq~~~l  409 (970)
T KOG0946|consen  381 KQPFSLRCAVLYCFRSYLYDNDDGQRKFL  409 (970)
T ss_pred             cCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence            4 357888888888777765444333333

>KOG3678|consensus

Probab=98.80  E-value=5.3e-07  Score=84.64  Aligned_cols=274  Identities=18%  Similarity=0.200  Sum_probs=191.5

Q ss_pred             HHHHHHhCCHHHHHHhccCCCh--HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHh
Q psy9169         110 IDELIEAGVVPICVELLDDENP--NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNI  186 (440)
Q Consensus       110 ~~~ii~~g~i~~Lv~lL~~~~~--~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl  186 (440)
                      .+.+...|.+..|+.++..++-  .++.+|...|-.+..  .++++.+...| +..++.+-+.. .++.....+.+|+++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3555667899999999976665  459999999999976  57788887776 55666655543 378889999999999


Q ss_pred             hCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC-HHHHhhHHHHHHHhhcCCCHHHHHHHH
Q psy9169         187 AGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDIC  265 (440)
Q Consensus       187 ~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~ll~~~d~~i~~~a~  265 (440)
                      ..++.+....++..|+++.++--.+..+ +.++++++.+|.|++-+.....+ -.+...+...|..+-.+.|+-++..||
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~-P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWCRRTD-PALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeecccCC-HHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            9999988899999999999988887766 89999999999999876522222 223355666777777788889999999


Q ss_pred             HHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh-HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhH
Q psy9169         266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI  344 (440)
Q Consensus       266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i  344 (440)
                      -+++.|+...+ .-..+...|.+..+-.++.+.++. ....+    ..-+.|..        ..-++.|+.+|++..-+-
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FARD~----hd~aQG~~--------~d~LqRLvPlLdS~R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFARDA----HDYAQGRG--------PDDLQRLVPLLDSNRLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhhhh----hhhhccCC--------hHHHHHhhhhhhcchhhh
Confidence            99999987554 224455566555555555544442 11111    11112211        124677888888765555


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         345 VKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                      +..+++-++-=++-...|           .-...+.+.|.++.|..+..+++.--.+.|..+|.-+-
T Consensus       396 q~i~AF~l~~EAaIKs~Q-----------~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQ-----------GKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             hhhHHHHHHHHHHHHHhc-----------cchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            555555555433322111           12456778999999999999998887888888887653

>KOG0213|consensus

Probab=98.73  E-value=8.6e-07  Score=87.54  Aligned_cols=316  Identities=14%  Similarity=0.181  Sum_probs=198.0

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCC--cHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERH-PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT--SEQ  151 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~--~~~  151 (440)
                      .+..++..|++.++.++.+|+..+..++.--+. ..-..+...|++  |.+.|....|++.-..+.++..|....  ...
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence            445567778899999999998877766432111 112334444543  778888889998766666666554321  111


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA---RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      +..  -.+++|.|..+|++.+.+++++++..++.||..++++   |+.+.   +--.|+.+|.... .++++++..++..
T Consensus       878 ~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahk-K~iRRaa~nTfG~  951 (1172)
T KOG0213|consen  878 TPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHK-KEIRRAAVNTFGY  951 (1172)
T ss_pred             CCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHH-HHHHHHHHhhhhH
Confidence            111  2489999999999999999999999999999777653   44433   3344666676665 7999999999999


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHH
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR  308 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~  308 (440)
                      ++..-.|       ..++..|+.-|...+-..+....-+|+-.+.....       -.++|.|+.=-..++..|+.-.++
T Consensus       952 IakaIGP-------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p-------FtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen  952 IAKAIGP-------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP-------FTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred             HHHhcCH-------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc-------hhhhHHHHhhccCchhHHHHhHHH
Confidence            9976533       34556666656555444444333344333322111       134777777667788889999999


Q ss_pred             HHHHhhcCChHH-HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC-----hHHHHHHhh------cCc-----
Q psy9169         309 TVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN-----SRQIDHVIQ------EGE-----  371 (440)
Q Consensus       309 ~L~nl~~~~~~~-~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~-----~~~~~~~i~------~~~-----  371 (440)
                      +++.+...-.+. .+++.  -+.|.|.+.|.+.+..-|..|+-++.+++-|.     .+..-.+++      +..     
T Consensus      1018 alsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhvi 1095 (1172)
T KOG0213|consen 1018 ALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVI 1095 (1172)
T ss_pred             HHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHH
Confidence            988776432221 22222  36788888888888888888888888888542     222222332      011     


Q ss_pred             ------chHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169         372 ------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       372 ------~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~  414 (440)
                            .+.++..+...-.+..+..=+-|+...|++.-..+++.++-..
T Consensus      1096 qa~~e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1096 QAFDEAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcc
Confidence                  1122222222222333334455888888888888777766543

>KOG1059|consensus

Probab=98.69  E-value=1.3e-05  Score=79.34  Aligned_cols=220  Identities=19%  Similarity=0.209  Sum_probs=167.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      -+.++.+|++.-+-++..|+..+.+++-.-+    +.+  .-.+|.|++-|.+++|.++..|+.+++.+|..+|.+--  
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYP----eAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYP----EAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhhh----HhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--
Confidence            3667888889999999999998888876544    121  13689999999999999999999999999998886422  


Q ss_pred             HhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         156 INANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       156 ~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                         ..-|.|.++|-..+ -=+.-..+..+++|+--.|....     ..+++|.+++.+....+++-.++.++........
T Consensus       218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence               45678888886533 22444567788888866565533     4689999999987767777777777664432222


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      -+.......-+++.|-.++.++|+.+.--+|-+++.+....+..++.-     -+.++.+|.+.++.++..|+..+--++
T Consensus       290 ~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmV  364 (877)
T KOG1059|consen  290 MSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMV  364 (877)
T ss_pred             CCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence            223445567788999999999999999999999999998877554442     567889999999999999999888776


Q ss_pred             cC
Q psy9169         315 TG  316 (440)
Q Consensus       315 ~~  316 (440)
                      ..
T Consensus       365 sk  366 (877)
T KOG1059|consen  365 SK  366 (877)
T ss_pred             hh
Confidence            53

>KOG1241|consensus

Probab=98.68  E-value=5.1e-06  Score=82.60  Aligned_cols=276  Identities=18%  Similarity=0.214  Sum_probs=172.0

Q ss_pred             CCHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhC
Q psy9169          74 MTVPEMIEGMKS-------SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS  146 (440)
Q Consensus        74 ~~i~~lv~~L~s-------~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~  146 (440)
                      ..+|.|+++|..       +++..-..|-.||.-+..--.    +.++. .++|.+-+-+++++..-+..|+.+++.+-.
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~----D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~  393 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG----DDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE  393 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc----ccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence            467888888863       223444445455542221111    12222 234444445578888999999999999998


Q ss_pred             CCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH-HHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169         147 GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL-LLGLGTMPQILALVQPNTPTTFLRNIVWA  225 (440)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~-i~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (440)
                      +....+..-+..+++|.++.++.++..-+++.+.|+||.++...++.+.- ....+.++.++.-|.+  .+.+..++||+
T Consensus       394 gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWA  471 (859)
T KOG1241|consen  394 GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWA  471 (859)
T ss_pred             CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHH
Confidence            87776666677899999999999998889999999999999876654322 2223344444444432  36889999999


Q ss_pred             HHhhhhCC-----CC-C--CCHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH-
Q psy9169         226 ISNLCRNK-----NP-A--PDFEKIKICLPLLNQLIHT---TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE-  293 (440)
Q Consensus       226 L~~l~~~~-----~~-~--~~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~-  293 (440)
                      +.+|+..-     .. .  +.......++..|++.-..   ++..++..+..+|..|....+.....++. ++...+.. 
T Consensus       472 f~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~-~~~l~il~k  550 (859)
T KOG1241|consen  472 FISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEK  550 (859)
T ss_pred             HHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHH
Confidence            99999431     01 0  1111222333333333332   45679999999999999877755443332 22222222 


Q ss_pred             --------hccCCC----hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcC
Q psy9169         294 --------LLDSEE----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAG  358 (440)
Q Consensus       294 --------lL~~~~----~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~  358 (440)
                              .+...+    .+++..-|.+|+.+..........+.+ .+...|++++.++ +..+..+|..+++-++..
T Consensus       551 l~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~lflri~~s~~s~~v~e~a~laV~tl~~~  627 (859)
T KOG1241|consen  551 LDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMGLFLRIFESKRSAVVHEEAFLAVSTLAES  627 (859)
T ss_pred             HHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence                    222222    246666777777776533323332333 4677889999884 456888999999988864

>KOG2973|consensus

Probab=98.66  E-value=8.3e-06  Score=73.01  Aligned_cols=274  Identities=16%  Similarity=0.191  Sum_probs=175.9

Q ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q psy9169         119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL  198 (440)
Q Consensus       119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~  198 (440)
                      ...++++|.+.+|.++..|+.-+..++.. +-..-.--+...++.+.+++....+  .+.|+.+|.|++.+ +..|+.++
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence            34578899999999999999999998865 2111111223568889999988766  78899999999988 67777777


Q ss_pred             hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHH------hhHHHHHHHhhcCCC--HHHHHHHHHHHHH
Q psy9169         199 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI------KICLPLLNQLIHTTD--VETLSDICWALSY  270 (440)
Q Consensus       199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~~~~L~~ll~~~d--~~i~~~a~~~L~~  270 (440)
                      .. .+..++.++.+.. ...-..+|.+|+|+++.+.........      .+++.....+..++-  ..-....+..+++
T Consensus        81 ~~-~~k~l~~~~~~p~-~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQ-SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HH-HHHHHHHHhcCcc-cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            66 7888888887765 467888999999999886332211111      222333333333221  1334566677788


Q ss_pred             hccCChhhHHHHHhcCCh--HHHHHhccCCChhHHH-HHHHHHHHhhcCChHHHHHHHHc--CCHHHHH-----------
Q psy9169         271 ISDGHNDKIQAVVDTGVV--PRLVELLDSEETTILT-AALRTVGNIATGNDHQTDCVIQA--GGLQKMK-----------  334 (440)
Q Consensus       271 l~~~~~~~~~~l~~~g~~--~~Lv~lL~~~~~~v~~-~al~~L~nl~~~~~~~~~~l~~~--g~l~~L~-----------  334 (440)
                      |+.....+ ..+.+...+  ..+..+ .+.+..++. -.+.+|.|.|.....+-. +++.  .+++.|.           
T Consensus       159 ls~~~~gR-~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~sE  235 (353)
T KOG2973|consen  159 LSQFEAGR-KLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEELSE  235 (353)
T ss_pred             Hhhhhhhh-hHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccccCH
Confidence            88766554 333333322  223333 334444554 467888888776553333 3321  1222221           


Q ss_pred             ----------HHhc-----CCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhc-CCcHH
Q psy9169         335 ----------KLLS-----SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQH-HENET  398 (440)
Q Consensus       335 ----------~ll~-----~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~-~~~~~  398 (440)
                                +++.     .+++.|++.-.-+|.-+|+....              +..++.-|+-..+..+-. .++++
T Consensus       236 Edm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~G--------------Re~lR~kgvYpilRElhk~e~ded  301 (353)
T KOG2973|consen  236 EDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAG--------------REVLRSKGVYPILRELHKWEEDED  301 (353)
T ss_pred             HHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHh--------------HHHHHhcCchHHHHHHhcCCCcHH
Confidence                      3332     23678888888888888875443              677888888887777633 56889


Q ss_pred             HHHHHHHHHHhhCCCCc
Q psy9169         399 VYQKCYKIISMAFNDSA  415 (440)
Q Consensus       399 v~~~a~~il~~~~~~~~  415 (440)
                      +.+.+.++...+..+++
T Consensus       302 ~~~ace~vvq~Lv~~e~  318 (353)
T KOG2973|consen  302 IREACEQVVQMLVRLEP  318 (353)
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999888888876444

>KOG0213|consensus

Probab=98.64  E-value=2e-06  Score=85.09  Aligned_cols=318  Identities=15%  Similarity=0.136  Sum_probs=190.3

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc--CCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~--~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .+..++.-+.++.+..+...+..+.++++.-....++.-.+.-.+..++..+.  +....+......++.+--.+  ..+
T Consensus       717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~k  794 (1172)
T KOG0213|consen  717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVK  794 (1172)
T ss_pred             HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--ccc
Confidence            46667777888888888888888888776544333444444445555555552  23333444555555443322  001


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      .  .-.-++..+++.|++..+.++.+|+..++.|+.--..+.  ..+-..|.  .|...|.... ++++-.++.++..++
T Consensus       795 p--ylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeey-pEvLgsILgAikaI~  869 (1172)
T KOG0213|consen  795 P--YLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEY-PEVLGSILGAIKAIV  869 (1172)
T ss_pred             c--chHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCccc-HHHHHHHHHHHHHHH
Confidence            1  112356778899999999999999999999983211111  11112222  2445554444 778777777777666


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV  310 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L  310 (440)
                      ..-.-.....-..+++|.|..+|.+....++.+++..++.++...++.+..--=..+.--|+++|.+.+.+++.+|..++
T Consensus       870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            44311122223578999999999999999999999999999988776532211124566788889889999999999999


Q ss_pred             HHhhc--CChHHHHHHH-----------------------HcCC---HHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169         311 GNIAT--GNDHQTDCVI-----------------------QAGG---LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ  362 (440)
Q Consensus       311 ~nl~~--~~~~~~~~l~-----------------------~~g~---l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  362 (440)
                      |.|+.  |..+....++                       -+|-   +|.|++=...++..++.-...+++.+.....+.
T Consensus       950 G~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen  950 GYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred             hHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHH
Confidence            98874  2222111111                       1232   333333333345566666666666655321111


Q ss_pred             HHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         363 IDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       363 ~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                      -         ..|...     ..+.|++-+...+.--++-|.++|.++.-+
T Consensus      1030 s---------kdYiya-----v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1030 S---------KDYIYA-----VTPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             h---------hhHHHH-----hhHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence            0         001111     245566666677777777788887776443

>KOG1517|consensus

Probab=98.60  E-value=2.7e-06  Score=87.08  Aligned_cols=254  Identities=13%  Similarity=0.153  Sum_probs=191.7

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      +.+|.+++.|-|+  -=++.|+..|.+.+.-.+ ..+..-..-|+.|.++++|+++..+++---+.+.+.|-.-++.+..
T Consensus       472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~  548 (1387)
T KOG1517|consen  472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA  548 (1387)
T ss_pred             HhcchHHHHHHHH--HHHHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH
Confidence            4455555555543  234567777777765443 4566667789999999999999999999999999998777788888


Q ss_pred             HHHhcCCHHHHHHhhCC-CC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         154 TVINANAIPKFLQLLSS-PH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~-~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      .+++.++-..++..|.. +.  ++=+..|+.+|+.|..+-+-.+...++.+.+...+..+..+..+-++..+|-||+.|-
T Consensus       549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            89999999999999987 33  5888999999999998878888888899999988888887544677888999999998


Q ss_pred             hCCCCCCCHH-HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC----ChhhHHHH------------HhcCCh---HH
Q psy9169         231 RNKNPAPDFE-KIKICLPLLNQLIHTTDVETLSDICWALSYISDG----HNDKIQAV------------VDTGVV---PR  290 (440)
Q Consensus       231 ~~~~~~~~~~-~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~----~~~~~~~l------------~~~g~~---~~  290 (440)
                      .+.+. .... ....+...|+.+|.++-++++.+|..+|+.+..+    .++....+            ++.-+.   -.
T Consensus       629 ~d~~~-Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  629 EDYDE-ARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhcch-hhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            87633 2332 3356788899999999999999999999999875    23222222            222222   25


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHH
Q psy9169         291 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ  331 (440)
Q Consensus       291 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~  331 (440)
                      ++.+++..++-++.+..-+|..++.+...+...+.-....+
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~n~~~~  748 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP  748 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence            66777888889999999999999988776665554433333

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.59  E-value=4.7e-06  Score=80.90  Aligned_cols=264  Identities=15%  Similarity=0.169  Sum_probs=174.9

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKER-HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~-~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      .+.+..++..|++..+.++..|+.....+..--+ ......+...|.|  |.+.|....|++.-..+.++..|.+...-.
T Consensus       603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence            4567788899999999999999876655432111 1123445555543  777888888988877677666665421110


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA---RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~---r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      ...---.|++|.|...|++.+.++....+..++.||..+|++   |+.+.   +--.|++.|.+.. .+++++|..++..
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~n-KeiRR~A~~tfG~  756 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWN-KEIRRNATETFGC  756 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhh-HHHHHhhhhhhhh
Confidence            001112489999999999999999999999999999877764   34332   3334666666666 8999999999999


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHH
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR  308 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~  308 (440)
                      +++.-.|       ..++..|..-|...+-..+....-+|+-.+.....       -.++|.|+.=-..++..|+.-.++
T Consensus       757 Is~aiGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLk  822 (975)
T COG5181         757 ISRAIGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLK  822 (975)
T ss_pred             HHhhcCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHH
Confidence            9976533       34566666666655544444444444433322111       134677766667788889988888


Q ss_pred             HHHHhhcCChHH-HHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         309 TVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       309 ~L~nl~~~~~~~-~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +++.+...-.+. .+.+  .-+.|.|-+.|.+.++.-+..|+-.+.+|+-+
T Consensus       823 am~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         823 AMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             HHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcC
Confidence            888765422211 1222  23678888888888888888888888888754

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=4.3e-06  Score=79.96  Aligned_cols=233  Identities=12%  Similarity=0.029  Sum_probs=173.7

Q ss_pred             HHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCC
Q psy9169         177 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT  256 (440)
Q Consensus       177 ~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~  256 (440)
                      ..++.+|-.++..-...|.-+....+.++|+++|.+++ ..+.-.++..+.|+.-.-.+-.......+++..|+.++.+.
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-ceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            34445555666665667788888899999999998865 55555666677776655445555667789999999999998


Q ss_pred             CHHHHHHHHHHHHHhccCChhhH-HHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH---HHHHHHHcC----
Q psy9169         257 DVETLSDICWALSYISDGHNDKI-QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH---QTDCVIQAG----  328 (440)
Q Consensus       257 d~~i~~~a~~~L~~l~~~~~~~~-~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~---~~~~l~~~g----  328 (440)
                      |..++....|.+..+..+..+.. -.++..-.+..++.+..++...|+..++..+.|+...+..   ..+.++...    
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            99999999999999997665332 2344455589999999999999999999999999874322   223222221    


Q ss_pred             CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh----------------------------------------
Q psy9169         329 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ----------------------------------------  368 (440)
Q Consensus       329 ~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~----------------------------------------  368 (440)
                      +...|++.+...+|-...+.|+.|.++++.+.+..+.+++                                        
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            4566777777778877777899999999876554444444                                        


Q ss_pred             -------------------------------------------cC---------cchHHHHHHHHcCcHHHHHHHhcCCc
Q psy9169         369 -------------------------------------------EG---------ELNQMALLVEESGGLEKLEALQHHEN  396 (440)
Q Consensus       369 -------------------------------------------~~---------~~~~~~~~l~~~g~l~~l~~L~~~~~  396 (440)
                                                                 .+         ....-+..+.+.|.-+.+..++.+++
T Consensus       646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S  725 (743)
T COG5369         646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS  725 (743)
T ss_pred             ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence                                                       00         02245778889999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy9169         397 ETVYQKCYKIISMA  410 (440)
Q Consensus       397 ~~v~~~a~~il~~~  410 (440)
                      +.|++++-.+|..+
T Consensus       726 l~vrek~~taL~~l  739 (743)
T COG5369         726 LIVREKIGTALENL  739 (743)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.55  E-value=1.8e-07  Score=59.03  Aligned_cols=41  Identities=29%  Similarity=0.644  Sum_probs=38.1

Q ss_pred             ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       317 ~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ++++++.+++.|+++.|+++|.++++.++++|+|+|+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            35788899999999999999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4413|consensus

Probab=98.51  E-value=9e-05  Score=67.04  Aligned_cols=329  Identities=11%  Similarity=0.152  Sum_probs=213.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC-CC--cHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKER-HP--PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~-~~--~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .+.|-..|..+|..+...++..+..++.... +.  .+..+++.|+++.++.++..++.++-..|...+..|+.. +...
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paal  162 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAAL  162 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHH
Confidence            4566677778899999999999888875432 11  145667899999999999888999999999999999865 6666


Q ss_pred             HHHHhcCCHHHH--HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINANAIPKF--LQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g~i~~L--~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      ..+.++.....+  ..+-...+.-+|...+..+..|.+-++.....+..+|.+..|..-++...+.-++.+++.....|.
T Consensus       163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa  242 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA  242 (524)
T ss_pred             HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence            777776665543  333333445567777888888888888888888899999999998887666778888888888888


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChh---hHHHHHhc--CChHHHHHhccCCChhHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHND---KIQAVVDT--GVVPRLVELLDSEETTIL  303 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~~---~~~~l~~~--g~~~~Lv~lL~~~~~~v~  303 (440)
                      ... ...++....+++..+..++..  ++|--.-.++...+.+-....-   .-+.+.+.  -.++...+.+...++..+
T Consensus       243 ete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  243 ETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            765 455666677888888888864  3443333344444433321110   00111111  124444556667888999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCC--HHHHH-HHhcCCChhHHHHHHHHHHHHhcC---ChHHHHHHhhcCcchHHHH
Q psy9169         304 TAALRTVGNIATGNDHQTDCVIQAGG--LQKMK-KLLSSSRVNIVKEAAWTISNITAG---NSRQIDHVIQEGELNQMAL  377 (440)
Q Consensus       304 ~~al~~L~nl~~~~~~~~~~l~~~g~--l~~L~-~ll~~~~~~i~~~a~~~L~nl~~~---~~~~~~~~i~~~~~~~~~~  377 (440)
                      ..|+.++|-+-+.. +..+.+...|-  ...++ ...+.....-+..+..+|.+|+.-   .++++   .+-.....++.
T Consensus       322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqi---tDgkaeerlrc  397 (524)
T KOG4413|consen  322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQI---TDGKAEERLRC  397 (524)
T ss_pred             HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhc---cccHHHHHHHH
Confidence            99999999875544 46666666552  33333 333333334566788889998853   33332   11001122333


Q ss_pred             HHHHc-------CcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169         378 LVEES-------GGLEKLEALQHHENETVYQKCYKIISMA  410 (440)
Q Consensus       378 ~l~~~-------g~l~~l~~L~~~~~~~v~~~a~~il~~~  410 (440)
                      .+.+.       .-++.....++.+.++++-.+++.+...
T Consensus       398 lifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAi  437 (524)
T KOG4413|consen  398 LIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAI  437 (524)
T ss_pred             HHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence            33222       2234445677788899988887655443

>TIGR02270 conserved hypothetical protein

Probab=98.50  E-value=8.4e-05  Score=71.96  Aligned_cols=211  Identities=14%  Similarity=0.042  Sum_probs=135.7

Q ss_pred             CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          75 TVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        75 ~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .++.++..|. .++..+...++..+.   .... +        .++..|+..|.+.++.++..++.+|+.+-.       
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~~-~--------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL---AQED-A--------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG-------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh---ccCC-h--------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence            4667777774 555666665555543   2222 1        137888888888888888888888887643       


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                          ....+.|+.+|.+.++.++..++.+++..-.            ...+.+..+|++.+ ..++..++.+|..+....
T Consensus       116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d-~~Vra~A~raLG~l~~~~  178 (410)
T TIGR02270       116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAALTHED-ALVRAAALRALGELPRRL  178 (410)
T ss_pred             ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCC-HHHHHHHHHHHHhhcccc
Confidence                2567788888888888888888877776322            23456777777555 788888888888877543


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                                 .+|.|...+.+.++.++..+++++..+-.  +.         .++.+..+...+.......+..+++..
T Consensus       179 -----------a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       179 -----------SESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             -----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                       45667777888888999988888876643  21         133444433333333333333333332


Q ss_pred             hcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       314 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                        +.+         .+++.|..++..+.  ++..++++++.+.
T Consensus       237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg  266 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG  266 (410)
T ss_pred             --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC
Confidence              222         34566777776543  7777777777663

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.45  E-value=3.6e-05  Score=74.39  Aligned_cols=262  Identities=11%  Similarity=0.059  Sum_probs=171.5

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhC----CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCH
Q psy9169          86 SNPKMRMIATRSARKMLSKERHPPIDELIEAG----VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI  161 (440)
Q Consensus        86 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g----~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i  161 (440)
                      .+..+++.|+.+|.+-+-.-    ...+...+    ++...++....++.++|..|..||..|..-........++.-..
T Consensus       190 t~~avRLaaL~aL~dsl~fv----~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~  265 (858)
T COG5215         190 TTSAVRLAALKALMDSLMFV----QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA  265 (858)
T ss_pred             chHHHHHHHHHHHHHHHHHH----HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777776522110    01111111    23344455577889999999999999987767777777888888


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH----------------HhcCChHHHHhhhCCCC------cHHHH
Q psy9169         162 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL----------------LGLGTMPQILALVQPNT------PTTFL  219 (440)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i----------------~~~g~i~~L~~ll~~~~------~~~~~  219 (440)
                      ....+.+++++.++..+++...+.+|....+..-..                ....++|.|+++|....      +=..-
T Consensus       266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s  345 (858)
T COG5215         266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS  345 (858)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence            888999999999999999998888884322111000                02337899999997522      11233


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC
Q psy9169         220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE  299 (440)
Q Consensus       220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~  299 (440)
                      ..+..||--++.....    .+..+++..+-+-+.+++..-+..+..+++.+..++.+..-.-+=..++|.+...+.++.
T Consensus       346 maA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~  421 (858)
T COG5215         346 MAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC  421 (858)
T ss_pred             hhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce
Confidence            4444444444433311    234456666667778888889999999999999887754443344677889999888888


Q ss_pred             hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc---CCChhHHHHHHHHHHHHhcC
Q psy9169         300 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       300 ~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~---~~~~~i~~~a~~~L~nl~~~  358 (440)
                      ..++..+.||+|.|+..-+.   .+-..|-++..+....   ...|.+...++|+.-|++.+
T Consensus       422 l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h  480 (858)
T COG5215         422 LWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH  480 (858)
T ss_pred             eehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence            88999999999999754322   1222333333332221   12467888999999999865

>KOG2973|consensus

Probab=98.43  E-value=0.00012  Score=65.68  Aligned_cols=269  Identities=16%  Similarity=0.190  Sum_probs=169.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ...++.++++.+|.++..|+..+..+... .   .+.+.  +.-.++.+.+++....+  -..|+.+|.|++.. ...++
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~---~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-G---LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRK   77 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-c---hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHH
Confidence            46789999999999999999888877543 1   12222  23568888899866655  67899999999965 66677


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh------cCChHHHHhhhCCCCc-HHHHHHHHHHH
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG------LGTMPQILALVQPNTP-TTFLRNIVWAI  226 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~i~~L~~ll~~~~~-~~~~~~a~~~L  226 (440)
                      .+++. .+..++..+.++...+...++..|.|++.+..........      .|.+.........+.+ ..-....+..+
T Consensus        78 ~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf  156 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF  156 (353)
T ss_pred             HHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence            77766 8888999999887788889999999999886665544432      3444444444444332 23345566777


Q ss_pred             HhhhhCCCCCCCHHHHhhHH--HHHHHhhcCCCHHHH-HHHHHHHHHhccCChhhHHHHHhc--CC--------------
Q psy9169         227 SNLCRNKNPAPDFEKIKICL--PLLNQLIHTTDVETL-SDICWALSYISDGHNDKIQAVVDT--GV--------------  287 (440)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~~~--~~L~~ll~~~d~~i~-~~a~~~L~~l~~~~~~~~~~l~~~--g~--------------  287 (440)
                      .||++.. ...........+  ..+..+-. .+..++ ...+++|.|.|-..... ..+++.  .+              
T Consensus       157 ~nls~~~-~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  157 ANLSQFE-AGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHhhhh-hhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcccc
Confidence            7887765 333333222222  22333333 344443 34566666666443322 122211  11              


Q ss_pred             -------hHHHHHhcc-----CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169         288 -------VPRLVELLD-----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI  355 (440)
Q Consensus       288 -------~~~Lv~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl  355 (440)
                             +|.=+++|-     .+++.++..-+.+|--||+... .++.+.+.|+.+.+-.+=......-..++|.-+.++
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                   222224443     2467799988999988887544 677888888888887776655433344555555554


Q ss_pred             h
Q psy9169         356 T  356 (440)
Q Consensus       356 ~  356 (440)
                      .
T Consensus       313 L  313 (353)
T KOG2973|consen  313 L  313 (353)
T ss_pred             H
Confidence            4

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.42  E-value=5.3e-07  Score=56.85  Aligned_cols=41  Identities=41%  Similarity=0.791  Sum_probs=38.2

Q ss_pred             CcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q psy9169         148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG  188 (440)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  188 (440)
                      +++++..+++.|++|.|+.+|++++.++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            36788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>TIGR02270 conserved hypothetical protein

Probab=98.42  E-value=6.5e-05  Score=72.72  Aligned_cols=211  Identities=13%  Similarity=0.044  Sum_probs=153.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .+..++..|.+.++.++..++..|..+    +.        .+..+.|+.+|.+.++.++..++.++....         
T Consensus        87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----~~--------~~a~~~L~~~L~~~~p~vR~aal~al~~r~---------  145 (410)
T TIGR02270        87 DLRSVLAVLQAGPEGLCAGIQAALGWL----GG--------RQAEPWLEPLLAASEPPGRAIGLAALGAHR---------  145 (410)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcC----Cc--------hHHHHHHHHHhcCCChHHHHHHHHHHHhhc---------
Confidence            388999999999999999999998754    11        146788999999999999998887777632         


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                         ....+.+..+|+++++.++..|+.+|+.+...           ..++.|...+.+.+ +.++..+++++..+...  
T Consensus       146 ---~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~-~~VR~aA~~al~~lG~~--  208 (410)
T TIGR02270       146 ---HDPGPALEAALTHEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSD-PEVRFAALEAGLLAGSR--  208 (410)
T ss_pred             ---cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCC-HHHHHHHHHHHHHcCCH--
Confidence               23567899999999999999999999998643           34666777766665 89999999999766431  


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                               ..++.+..+...........+..++...  ..+         .+++.|..++.++.  ++..++.++|.+-
T Consensus       209 ---------~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg  266 (410)
T TIGR02270       209 ---------LAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG  266 (410)
T ss_pred             ---------hHHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC
Confidence                     2344555544444433333333333322  111         45888999998764  8999999999753


Q ss_pred             cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                        ++         ..++.|+..+...  .++..|.++++.|+.-
T Consensus       267 --~p---------~av~~L~~~l~d~--~~aR~A~eA~~~ItG~  297 (410)
T TIGR02270       267 --DV---------EAAPWCLEAMREP--PWARLAGEAFSLITGM  297 (410)
T ss_pred             --Cc---------chHHHHHHHhcCc--HHHHHHHHHHHHhhCC
Confidence              22         4678888888754  3999999999999853

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.41  E-value=0.0001  Score=70.47  Aligned_cols=241  Identities=20%  Similarity=0.274  Sum_probs=167.5

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      ..++.++.++.+.++.++..+++.++.+...           -+++.+..++.+.++.++..|+.+|+.+-..       
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-------  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGDP-------  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-------
Confidence            4688889999888999999999998877632           5789999999999999999999999887533       


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCH------------HHHHHH
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV------------ETLSDI  264 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~------------~i~~~a  264 (440)
                          ..++.|+.++..+.+..++..+.++|..+-...           .+..++..+.+...            .++..+
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                257889999886555899999999999877543           35566666665442            344444


Q ss_pred             HHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhH
Q psy9169         265 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI  344 (440)
Q Consensus       265 ~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i  344 (440)
                      ..+++.+-.           ...++.+...+.+....++..|..+|+.+....         ..+.+.+...+.+++..+
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v  229 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV  229 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence            444444432           234788999999998899999999999987655         245678889999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHhh----cCcchHHHHHHHH-----cCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         345 VKEAAWTISNITAGNSRQIDHVIQ----EGELNQMALLVEE-----SGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~i~----~~~~~~~~~~l~~-----~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      +..++.+|+.+-...  ....++.    .............     ......+...+.+.+..+...+...+..+..
T Consensus       230 r~~~~~~l~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         230 RKAALLALGEIGDEE--AVDALAKALEDEDVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             HHHHHHHhcccCcch--hHHHHHHHHhccchHHHHHHHHHhcccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence            999999999885432  2222222    0000011111111     1113334445556666666666666666644

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.39  E-value=0.00021  Score=68.30  Aligned_cols=188  Identities=23%  Similarity=0.326  Sum_probs=145.7

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.+++.+.+.+..++..+++.+..+-.            .-+++.+..++.+.++.++..|+.+|+.+-..      
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS------------EEAVPLLRELLSDEDPRVRDAAADALGELGDP------  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch------------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh------
Confidence            468899999999999999999999764421            13689999999999999999999999887532      


Q ss_pred             HHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc-----------HHHHHH
Q psy9169         154 TVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP-----------TTFLRN  221 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~-----------~~~~~~  221 (440)
                           ..++.|+.++. +++..++..+.++|+.+-...           .+.+++..+.+...           ..++..
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~  168 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAA  168 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence                 57888999999 588999999999999886442           36677777765441           123444


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh
Q psy9169         222 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT  301 (440)
Q Consensus       222 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~  301 (440)
                      +...+..+...           ..++.+..++.+.+..++..+..+++.+....         ..+.+.+...+.+++..
T Consensus       169 a~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         169 AAEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            44444443322           35778888999998899999999999998765         24468888999999999


Q ss_pred             HHHHHHHHHHHhhc
Q psy9169         302 ILTAALRTVGNIAT  315 (440)
Q Consensus       302 v~~~al~~L~nl~~  315 (440)
                      ++..++.+++.+-.
T Consensus       229 vr~~~~~~l~~~~~  242 (335)
T COG1413         229 VRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHhcccCc
Confidence            99999999998643

>KOG1062|consensus

Probab=98.38  E-value=0.0001  Score=74.14  Aligned_cols=66  Identities=14%  Similarity=0.095  Sum_probs=38.7

Q ss_pred             hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +..|-++|.+.+..++.-|+..|...+..++...+.-     =..++++|++++..+++.|.-.+..|+..
T Consensus       315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~  380 (866)
T KOG1062|consen  315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNE  380 (866)
T ss_pred             HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence            3344444444444455555555555554444333322     24477788888888888888888777753

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.38  E-value=0.00016  Score=71.41  Aligned_cols=264  Identities=15%  Similarity=0.122  Sum_probs=178.7

Q ss_pred             HHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc----------cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHH
Q psy9169          95 TRSARKMLSKERHPPIDELIEAGVVPICVELL----------DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF  164 (440)
Q Consensus        95 ~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL----------~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L  164 (440)
                      +.+++ ++++++ ...+.+.....+..|..+-          ...++.+..+|+.||+|+...++..++.+++.|..+.+
T Consensus         2 L~~LR-iLsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLR-ILSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHH-HHccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            34444 445555 3455666555666666654          34577899999999999999999999999999999999


Q ss_pred             HHhhCCC-----CHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHhhhCC---------C-------CcHHHHHHH
Q psy9169         165 LQLLSSP-----HLNLAEQATWALGNIAGDGARARDLLL-GLGTMPQILALVQP---------N-------TPTTFLRNI  222 (440)
Q Consensus       165 ~~lL~~~-----~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~i~~L~~ll~~---------~-------~~~~~~~~a  222 (440)
                      +..|+..     +.++.--....|.-++...+..+..++ +.+++..|...|..         .       .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999986     677887888888888877777776666 44777777766541         1       235667888


Q ss_pred             HHHHHhhhhCCCCCCC---HHHHhhHHHHHHHhh---cC--CCHHHHHHHHHHHHHhccCChhh-----------HHHHH
Q psy9169         223 VWAISNLCRNKNPAPD---FEKIKICLPLLNQLI---HT--TDVETLSDICWALSYISDGHNDK-----------IQAVV  283 (440)
Q Consensus       223 ~~~L~~l~~~~~~~~~---~~~~~~~~~~L~~ll---~~--~d~~i~~~a~~~L~~l~~~~~~~-----------~~~l~  283 (440)
                      +.++.|+.........   ......+++.+..++   ..  .-......+..+|.++-......           .....
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            8899999876533222   223345555555552   11  12356777777777763211110           00012


Q ss_pred             hcCChHHHHHhccC-----C---ChhHHHHHHHHHHHhhcCChHHHHHHHH----------------cCCHHHHHHHhcC
Q psy9169         284 DTGVVPRLVELLDS-----E---ETTILTAALRTVGNIATGNDHQTDCVIQ----------------AGGLQKMKKLLSS  339 (440)
Q Consensus       284 ~~g~~~~Lv~lL~~-----~---~~~v~~~al~~L~nl~~~~~~~~~~l~~----------------~g~l~~L~~ll~~  339 (440)
                      +..++..|+.+|..     .   -.+...+.+.+|.+++..+...++.+..                ..+-..|++++.+
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~  319 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS  319 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC
Confidence            23456777777642     1   1257788899999999887665555542                2477889999999


Q ss_pred             CChhHHHHHHHHHHHHhcCCh
Q psy9169         340 SRVNIVKEAAWTISNITAGNS  360 (440)
Q Consensus       340 ~~~~i~~~a~~~L~nl~~~~~  360 (440)
                      +.+.++..++-.|..+|..+.
T Consensus       320 ~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  320 PDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             CCchHHHHHHHHHHHHHhhhH
Confidence            988899999988888886554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.36  E-value=6.8e-05  Score=71.75  Aligned_cols=317  Identities=15%  Similarity=0.136  Sum_probs=193.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .+.+...+-+++.+++..|.+.+|.++...  .....+.+.++--.++.-|  ...+..=+.+|+..+..+..-... . 
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~-  102 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-P-  102 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-c-
Confidence            445554555566999999999999887644  3567788878766777777  334455678899888877654211 1 


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      ..+..|++..++.+..+++..++..|+.+|..++-.+|   +.+...|++..|++.+.++. .++...++.++..+...+
T Consensus       103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS-FSISESLLDTLLYLLDSP  178 (371)
T ss_pred             ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCc
Confidence            12355889999999999999999999999999997766   45788999999999998755 458888999999998776


Q ss_pred             CCCCCHH----HHhhHHHHHHHhh---cCCCH--HHHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhccCCChhHH
Q psy9169         234 NPAPDFE----KIKICLPLLNQLI---HTTDV--ETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSEETTIL  303 (440)
Q Consensus       234 ~~~~~~~----~~~~~~~~L~~ll---~~~d~--~i~~~a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~~~~~v~  303 (440)
                      .. ....    ....++.++.+.-   ..++.  +....+..++..+-..=+.....-.+. ..+..|+..|..++++++
T Consensus       179 ~t-R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir  257 (371)
T PF14664_consen  179 RT-RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIR  257 (371)
T ss_pred             ch-hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHH
Confidence            32 2221    1233333333331   11222  355566666666554333222211122 467888888888888888


Q ss_pred             HHHHHHHHHhhcCC-hHHHHHH------HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHH
Q psy9169         304 TAALRTVGNIATGN-DHQTDCV------IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMA  376 (440)
Q Consensus       304 ~~al~~L~nl~~~~-~~~~~~l------~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~  376 (440)
                      ...+..+..+..-. +......      ...|-..--.++....     .+....+-.-......-++..+     .-+.
T Consensus       258 ~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~-----~e~~~~~~~~~~~~~~l~~~y~-----aLll  327 (371)
T PF14664_consen  258 KAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGF-----AEAKSILPHRSSKRPNLVNHYL-----ALLL  327 (371)
T ss_pred             HHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccc-----cccccccCccccccccHHHHHH-----HHHH
Confidence            88888777765421 1111111      0111100000000000     0000000000000111111111     1235


Q ss_pred             HHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhC
Q psy9169         377 LLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAF  411 (440)
Q Consensus       377 ~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~  411 (440)
                      ..+.++|.++.|..+.... ++.+..+|.-+|..++
T Consensus       328 ~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  328 AILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            6788999999999988877 8999999999988764

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=6.4e-06  Score=78.83  Aligned_cols=243  Identities=12%  Similarity=0.161  Sum_probs=173.7

Q ss_pred             HHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q psy9169         112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA  191 (440)
Q Consensus       112 ~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~  191 (440)
                      -+.+..+...|+++|..++..+..-+...++|....-+..+..++..|++..|++++.+.+..++....|++..+..+..
T Consensus       426 gL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq  505 (743)
T COG5369         426 GLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ  505 (743)
T ss_pred             hccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence            34455788999999987777777888899999988878888999999999999999999999999999999999986544


Q ss_pred             h-hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC---CCCHHH----HhhHHHHHHHhhcCCCHHHHHH
Q psy9169         192 R-ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP---APDFEK----IKICLPLLNQLIHTTDVETLSD  263 (440)
Q Consensus       192 ~-~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~----~~~~~~~L~~ll~~~d~~i~~~  263 (440)
                      . .+-..+..-++..++.+...+. -.++..+...|.|+..+...   ..++..    ..-++..+++.+...+|-....
T Consensus       506 ~~ekf~~Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         506 KNEKFKFLAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             chhhhhhHHhcCHHHHHHHhcCcc-cccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence            3 3445667778899999987766 78999999999998864311   111111    1225666777777888877778


Q ss_pred             HHHHHHHhccCChhhHHHHHhc-CChHHHHHhcc----C-----------------------------------------
Q psy9169         264 ICWALSYISDGHNDKIQAVVDT-GVVPRLVELLD----S-----------------------------------------  297 (440)
Q Consensus       264 a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~----~-----------------------------------------  297 (440)
                      .|+.|.+++..+++..+.+... .++..+..+|.    .                                         
T Consensus       585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D  664 (743)
T COG5369         585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLD  664 (743)
T ss_pred             hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCcc
Confidence            8999999887776554444322 22222222210    0                                         


Q ss_pred             --------CChhHHHHHHHHHHHhhcC---C------hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169         298 --------EETTILTAALRTVGNIATG---N------DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI  355 (440)
Q Consensus       298 --------~~~~v~~~al~~L~nl~~~---~------~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl  355 (440)
                              ++.+.-.+..|.+.|+...   .      -+.++.+.+.|+-+++..+..+.++.+++.+--+|.|+
T Consensus       665 ~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         665 NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence                    1123445556666665431   1      14556677888888888888888888998888888876

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.35  E-value=4.9e-05  Score=68.40  Aligned_cols=228  Identities=13%  Similarity=0.100  Sum_probs=157.8

Q ss_pred             cCCChHHHHHHHHHHHHHhCCCcHHHHHH-HhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHH-hcCC
Q psy9169         127 DDENPNTQFEATWALTNIASGTSEQTMTV-INANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLLL-GLGT  202 (440)
Q Consensus       127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i-~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~  202 (440)
                      +.-++-.+.-|+.+|.++... ++.|..+ .+.-+-..++.++++.  ..+++.+.+.+++-+... +.+.+.+- -...
T Consensus       159 Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dl  236 (432)
T COG5231         159 QLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDL  236 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence            445566788899999999866 6666654 3445666788888763  367888888888888766 44432222 2346


Q ss_pred             hHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC---HHHHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHhccCC--
Q psy9169         203 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD---FEKIKICLPLLNQLIH--TTDVETLSDICWALSYISDGH--  275 (440)
Q Consensus       203 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~~L~~ll~--~~d~~i~~~a~~~L~~l~~~~--  275 (440)
                      +..|+.+++....+.+.+-++..+.|++... |..-   ......+.|..--++.  -.|++++.+.-..=+.|....  
T Consensus       237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~-pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~  315 (432)
T COG5231         237 INDLIAIVKERAKEKVLRLCCGIVANVLDKS-PKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK  315 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence            7778888887777899999999999999843 2211   1122334444433332  256666555433332222111  


Q ss_pred             -------------------h---------hhHHHHHhc--CChHHHHHhccCCChh-HHHHHHHHHHHhhcCChHHHHHH
Q psy9169         276 -------------------N---------DKIQAVVDT--GVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCV  324 (440)
Q Consensus       276 -------------------~---------~~~~~l~~~--g~~~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~l  324 (440)
                                         +         ..+..+.+.  .++..|.++++..++. ....||.-|+.++...|+....+
T Consensus       316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl  395 (432)
T COG5231         316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL  395 (432)
T ss_pred             hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence                               0         122333332  5788899999887765 56678999999999999999999


Q ss_pred             HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         325 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       325 ~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ...|+-..+++++.+++++++-+|..++.-+..
T Consensus       396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            999999999999999999999999999887653

>KOG1789|consensus

Probab=98.34  E-value=0.00032  Score=72.41  Aligned_cols=264  Identities=14%  Similarity=0.178  Sum_probs=177.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCCc---HHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHH
Q psy9169          89 KMRMIATRSARKMLSKERHPP---IDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF  164 (440)
Q Consensus        89 ~~~~~a~~~l~~lls~~~~~~---~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L  164 (440)
                      +-...++.+++|+++..++-.   -.+..--|..+.+..+| ...++.++..|+.++..+++. .++...+...|.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHH
Confidence            345668999999988665210   11122237788888888 778899999999999887754 7888899999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC--HHHH
Q psy9169         165 LQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKI  242 (440)
Q Consensus       165 ~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~  242 (440)
                      +.+|.+. +..++.++.+|..++.. +.......++|++..+..++........+..++..+..+...+-..+.  +...
T Consensus      1819 L~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred             HHHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence            9999764 67899999999999987 555566778999999999988777778888888877777654322111  1111


Q ss_pred             hhHH------------HHHHHhhcC--CCH--------------------------------------------------
Q psy9169         243 KICL------------PLLNQLIHT--TDV--------------------------------------------------  258 (440)
Q Consensus       243 ~~~~------------~~L~~ll~~--~d~--------------------------------------------------  258 (440)
                       .++            ...++++..  +++                                                  
T Consensus      1897 -kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1897 -KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             -HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence             111            111111111  111                                                  


Q ss_pred             --------------------------------------------HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh
Q psy9169         259 --------------------------------------------ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL  294 (440)
Q Consensus       259 --------------------------------------------~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l  294 (440)
                                                                  ....-...++..|....+...+.+-..|-+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                                                        111112222333333444444444456899999999


Q ss_pred             ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         295 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +.+.+..+-..|++.|-.++.+. ...+.+.....+..++..|... +....-||-+|-.+...
T Consensus      2056 m~~~n~s~P~SaiRVlH~Lsen~-~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r 2117 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQ-FCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKR 2117 (2235)
T ss_pred             HHhcCCcCcHHHHHHHHHHhhcc-HHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHH
Confidence            88777777788999999987654 3667777777777788777653 34455788888887753

>KOG1061|consensus

Probab=98.28  E-value=4.8e-05  Score=76.24  Aligned_cols=274  Identities=17%  Similarity=0.208  Sum_probs=173.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      ++.++....+.++..+..|++.+..+   .    ...++ .-+..++...+++.++.+|..++-+..++-..+   .+.+
T Consensus        88 vnt~~kD~~d~np~iR~lAlrtm~~l---~----v~~i~-ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~  156 (734)
T KOG1061|consen   88 VNTFLKDCEDPNPLIRALALRTMGCL---R----VDKIT-EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLV  156 (734)
T ss_pred             hhhhhccCCCCCHHHHHHHhhceeeE---e----ehHHH-HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhc
Confidence            34444444455555555555544321   0    11111 124677888889999999999999999987553   4567


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC
Q psy9169         156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP  235 (440)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~  235 (440)
                      .+.|.++.|..++.++++.|...|+.+|..|....+..--..+....+..++..+...+    ...-+..|-.++... +
T Consensus       157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~----EW~qi~IL~~l~~y~-p  231 (734)
T KOG1061|consen  157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT----EWGQIFILDCLAEYV-P  231 (734)
T ss_pred             cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh----hhhHHHHHHHHHhcC-C
Confidence            78899999999999999999999999999999665432122222233444444443322    333444555666554 3


Q ss_pred             CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         236 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       236 ~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      ... .....++..+...|.+.++.+...+..++.++...... ....+-..+-++|+.++.... +++..|++-+.-+..
T Consensus       232 ~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~  308 (734)
T KOG1061|consen  232 KDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQ  308 (734)
T ss_pred             CCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHH
Confidence            333 44566788888888999999999999999888865554 233444566788888888776 777777777666655


Q ss_pred             CChHHHH--------------------------HHHHcCC---HHHHHHHhcCCChhHHHHHHHHHHHHhcCC---hHHH
Q psy9169         316 GNDHQTD--------------------------CVIQAGG---LQKMKKLLSSSRVNIVKEAAWTISNITAGN---SRQI  363 (440)
Q Consensus       316 ~~~~~~~--------------------------~l~~~g~---l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~---~~~~  363 (440)
                      ..+....                          ...++++   +.-+...-..-+.+..+++.+++++++..-   ...+
T Consensus       309 ~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~cv  388 (734)
T KOG1061|consen  309 KRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDCV  388 (734)
T ss_pred             hChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhhH
Confidence            4332111                          0111222   222333333346788899999999998642   2344


Q ss_pred             HHHhh
Q psy9169         364 DHVIQ  368 (440)
Q Consensus       364 ~~~i~  368 (440)
                      ..+++
T Consensus       389 ~~lLe  393 (734)
T KOG1061|consen  389 SILLE  393 (734)
T ss_pred             HHHHH
Confidence            44444

>KOG1059|consensus

Probab=98.28  E-value=0.0002  Score=71.22  Aligned_cols=227  Identities=13%  Similarity=0.167  Sum_probs=169.9

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      ++-+-++.+|.+.-|-+|..|+.+|..+....|+..+     ..+|.|..-|.++++.|+..|+.+++.||..+|...  
T Consensus       144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny--  216 (877)
T KOG1059|consen  144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY--  216 (877)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc--
Confidence            3456678888889999999999999999876665433     568999999999999999999999999998877641  


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCH-HHHHHHHHHHH--Hhcc
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALS--YISD  273 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~-~i~~~a~~~L~--~l~~  273 (440)
                         ...-|.+..+|..+++.=++...+..+++|+.-.     ......++|.|..+++++.. .+.-.+..++.  +|+.
T Consensus       217 ---L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE-----PRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  217 ---LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE-----PRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ---ccccHHHHHHHhccCCCeehHHHHHHHhhccccC-----chhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence               2356788888887776667777777777777543     23457789999999987653 45555555442  4444


Q ss_pred             CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q psy9169         274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS  353 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~  353 (440)
                      +.++.... + .-++..|-.++.+.++.++.-++.+++.|...++..++.-     -+.++++|.+.++.||-.|.-.|.
T Consensus       289 g~~d~~as-i-qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  289 GMSDHSAS-I-QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             CCCCcHHH-H-HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHH
Confidence            43332111 1 1247888888999999999999999999998777655533     467889999999999999999988


Q ss_pred             HHhcCChHHHHHHh
Q psy9169         354 NITAGNSRQIDHVI  367 (440)
Q Consensus       354 nl~~~~~~~~~~~i  367 (440)
                      -|..  .+.+..++
T Consensus       362 gmVs--kkNl~eIV  373 (877)
T KOG1059|consen  362 GMVS--KKNLMEIV  373 (877)
T ss_pred             HHhh--hhhHHHHH
Confidence            8874  33444444

>KOG1062|consensus

Probab=98.27  E-value=0.0014  Score=66.30  Aligned_cols=300  Identities=17%  Similarity=0.160  Sum_probs=156.3

Q ss_pred             hhhHHHHHhhcc---CCCChHHHHHHHHHHHHHHHHhhhh--HHH-Hhhccccc-------cccchhhhccccCCCCCCc
Q psy9169           5 VAAIDRKASFKN---AGKSFDEMRRKRCEMNVELRKAHKD--DQL-FKRRNIDQ-------LDEIEEENVTVIEPTCMSP   71 (440)
Q Consensus         5 ~~~~~r~~~~k~---~~~~~~~~r~~R~~~~~~lRk~kr~--~~l-~krR~~~~-------~~~~~~~~~~~~~~~~~~~   71 (440)
                      |-+..|++.+=.   ..++..|-|+-=......||+.-|+  .-. ..||++.-       ..++               
T Consensus         4 ~~~~srL~dlIr~IraakT~AEEr~vI~kE~a~IRa~ire~~~d~~~r~rniaKLlYi~MLGypa---------------   68 (866)
T KOG1062|consen    4 FAPSSRLRDLIRAIRAAKTAAEERAVIQKECAAIRASIREPTNDPRKRHRNIAKLLYIHMLGYPA---------------   68 (866)
T ss_pred             CCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhCCCc---------------
Confidence            344455555532   1245556566555667788988888  433 33444421       1111               


Q ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                       ..+--.-++++.|++.....-+--...-++ .+. +..-.+    +...+..=|++++.-++-.|+.+|+++++  ++.
T Consensus        69 -hFGqieclKLias~~f~dKRiGYLaamLlL-dE~-qdvllL----ltNslknDL~s~nq~vVglAL~alg~i~s--~Em  139 (866)
T KOG1062|consen   69 -HFGQIECLKLIASDNFLDKRIGYLAAMLLL-DER-QDLLLL----LTNSLKNDLNSSNQYVVGLALCALGNICS--PEM  139 (866)
T ss_pred             -cchhhHHHHHhcCCCchHHHHHHHHHHHHh-ccc-hHHHHH----HHHHHHhhccCCCeeehHHHHHHhhccCC--HHH
Confidence             122223456667776554444443333233 222 111111    24455666678888899999999999985  444


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                      .+     ...|-+.++|++.++.++..|+.|...+....|..-..     +++....+|.+.+ ..+....+..+..+|.
T Consensus       140 ar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~  208 (866)
T KOG1062|consen  140 AR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKH-HGVLIAGLHLITELCK  208 (866)
T ss_pred             hH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcC-CceeeeHHHHHHHHHh
Confidence            33     45788889999999999999999999988776655332     2344444444333 3444444444444444


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhhc---------------CCCHHHHHHHHHHHHHhccCChhhHHHHHh------------
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLIH---------------TTDVETLSDICWALSYISDGHNDKIQAVVD------------  284 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll~---------------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~------------  284 (440)
                      ....  .......+++.++..|+               -+||-++..+++.|.-|-.++.+..+.+-+            
T Consensus       209 ~~~~--~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdss  286 (866)
T KOG1062|consen  209 ISPD--ALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSS  286 (866)
T ss_pred             cCHH--HHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhccccc
Confidence            3211  11112223333333321               124455555555555555544433222210            


Q ss_pred             --------cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHH
Q psy9169         285 --------TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE  347 (440)
Q Consensus       285 --------~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~  347 (440)
                              ..++..+..+  .++..++..|+.+||.+..+.+.+++++    ++..|..++......+++.
T Consensus       287 kN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYv----aLn~L~r~V~~d~~avqrH  351 (866)
T KOG1062|consen  287 KNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYV----ALNMLLRVVQQDPTAVQRH  351 (866)
T ss_pred             ccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeee----ehhhHHhhhcCCcHHHHHH
Confidence                    0111122221  1334566667777777766666555543    4555666665544444443

>KOG1061|consensus

Probab=98.26  E-value=0.0001  Score=73.92  Aligned_cols=253  Identities=13%  Similarity=0.096  Sum_probs=179.9

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .-++.+++.....|.+.....-..+.+.....+.   .   ..++++.++.=..+++|.+|..|++.++.+..+  ....
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~---~---a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e  120 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD---L---AILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE  120 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccCch---H---HHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH
Confidence            4578999999999988888888888888654431   1   235688888888999999999999998887643  2222


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                           -+...+...+++.++.++..++.+..++-..++   +.+...|.++.|-.++.+++ +.+..+|+.+|..+....
T Consensus       121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESH  191 (734)
T ss_pred             -----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhC
Confidence                 356789999999999999999999999886643   56778899999999998555 899999999999999776


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                      ............+..++..+...++.-+...+.++..-...++.-.+     .++.++...|.|.+..+...+...+-++
T Consensus       192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~  266 (734)
T KOG1061|consen  192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQL  266 (734)
T ss_pred             CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHH
Confidence            33333334455666666666666666666677766666654442222     3477888888888888888888888877


Q ss_pred             hcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHH
Q psy9169         314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW  350 (440)
Q Consensus       314 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~  350 (440)
                      +...+.....+. ..+-+.|+.++.+.. .++.-|..
T Consensus       267 ~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLr  301 (734)
T KOG1061|consen  267 VKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALR  301 (734)
T ss_pred             HHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHh
Confidence            654443222222 245566666666544 44444333

>KOG1824|consensus

Probab=98.26  E-value=0.00016  Score=73.90  Aligned_cols=274  Identities=14%  Similarity=0.172  Sum_probs=165.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169          78 EMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN  157 (440)
Q Consensus        78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~  157 (440)
                      .|++.+.|+|.+.|+.|+.-|.+-+.... ...+.=-+..++..++++|.+.++++|..|+.||+-+++.-++.+-.   
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le---   84 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE---   84 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhh-hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH---
Confidence            78889999999999999998877665432 22233334568899999999999999999999999999654432211   


Q ss_pred             cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc----CChHHHHhhhCCC-CcHHHHHHHHHHHHhhhhC
Q psy9169         158 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL----GTMPQILALVQPN-TPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~----g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~  232 (440)
                       ..+..|+.-+-++....+..+.-.|.....+-+.........    .+.+.+...+..+ +...++..++..+..+...
T Consensus        85 -~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   85 -TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             -HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence             234555555545545555444433332222212111111222    2444454444432 2234666666666544433


Q ss_pred             CC-CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHHH
Q psy9169         233 KN-PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTV  310 (440)
Q Consensus       233 ~~-~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~L  310 (440)
                      -. --++  .-..++..+..-+.+....++..++.+|+.++..-+..    .-.+++..|++-|..+ ++.....-+.+|
T Consensus       164 ~g~ll~~--fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l  237 (1233)
T KOG1824|consen  164 FGTLLPN--FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCL  237 (1233)
T ss_pred             hcccCcc--hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence            21 1122  23456666777778888899999999999998544322    1124567777777554 344455566777


Q ss_pred             HHhhcCChHHHHHHHHcCCHHHHHHHh---cCCChhHHHHHHHHHHHHhcCChHHH
Q psy9169         311 GNIATGNDHQTDCVIQAGGLQKMKKLL---SSSRVNIVKEAAWTISNITAGNSRQI  363 (440)
Q Consensus       311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll---~~~~~~i~~~a~~~L~nl~~~~~~~~  363 (440)
                      +.++.........-. ..++|.+.+..   +..+.++++....++.-+....+..+
T Consensus       238 ~~i~r~ag~r~~~h~-~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei  292 (1233)
T KOG1824|consen  238 AAICRQAGHRFGSHL-DKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEI  292 (1233)
T ss_pred             HHHHHHhcchhhccc-chhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhh
Confidence            777753322111111 24678888888   55567889988888887776555443

>KOG4646|consensus

Probab=98.24  E-value=1.7e-05  Score=62.30  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=98.6

Q ss_pred             CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169         117 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD  195 (440)
Q Consensus       117 g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (440)
                      +.+..|+.-. ...+.+.+.+...-|.|.|-+ |-+-..+.+..++..++..|..++..+.+.++..|+|+|.+ +....
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHH
Confidence            3455566555 677889999999999999965 77778889999999999999999999999999999999998 56668


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                      .+.+.+++|.++..+.++. ..++..++.++..|+.+..
T Consensus        94 ~I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~~~R  131 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPP-EITVHSAALFLQLLEFGER  131 (173)
T ss_pred             HHHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcCccc
Confidence            8999999999999988777 7788889999999997753

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.24  E-value=1e-05  Score=78.66  Aligned_cols=153  Identities=19%  Similarity=0.155  Sum_probs=104.7

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169         160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP  237 (440)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  237 (440)
                      ++..++++|+++.+.++.+|+...+.|+.--..+.  ..+...|.  .|..-|.... ++++-.++.++..+.....-..
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDY-PEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCccc-HHHHHHHHHHHHHHhhhhcccc
Confidence            57788999999999999999999998872211110  11222222  2333343333 7777766666666554321111


Q ss_pred             CHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         238 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       238 ~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      -..-..+++|.|..+|.+....+..+....++.++...++.+..--=..+.--|+..|.+.+.+++..|..++|-|+.
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            111257899999999999999999999999999998887653221112455678888999999999999999998874

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.21  E-value=4.4e-06  Score=62.70  Aligned_cols=87  Identities=26%  Similarity=0.451  Sum_probs=72.6

Q ss_pred             HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169         119 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL  197 (440)
Q Consensus       119 i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  197 (440)
                      ||.|++.| .++++.+|..++++|+.+..  +         .+++.|+.+++++++.++..|+++|+.+..         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIGD---------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence            68899999 99999999999999996531  1         459999999999999999999999998841         


Q ss_pred             HhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169         198 LGLGTMPQILALVQPNTPTTFLRNIVWAIS  227 (440)
Q Consensus       198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~  227 (440)
                        ...++.|..++.++.+..++..++++|+
T Consensus        61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 --PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              2478999999998776777888888874

>KOG1060|consensus

Probab=98.18  E-value=0.00089  Score=67.38  Aligned_cols=219  Identities=16%  Similarity=0.189  Sum_probs=137.2

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      -..|..+-+.|.++++.++..|++.+..+    .-+.+.-+    ++-.+-++..+..+.+|..|+.++..+-+-.++..
T Consensus       107 LLSIntfQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k  178 (968)
T KOG1060|consen  107 LLSINTFQKALKDPNQLIRASALRVLSSI----RVPMIAPI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK  178 (968)
T ss_pred             eeeHHHHHhhhcCCcHHHHHHHHHHHHhc----chhhHHHH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence            45677888888888888888777777543    11111111    12223334478889999999999999988777766


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      ..+     +..+-.+|.+.++-|.-.|+.++-.+|.+.   -+.  -++-...|+++|..-+ .=-+..++..|..-|+.
T Consensus       179 ~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldL--IHknyrklC~ll~dvd-eWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  179 DQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDL--IHKNYRKLCRLLPDVD-EWGQVVLINMLTRYARH  247 (968)
T ss_pred             HHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHH--hhHHHHHHHhhccchh-hhhHHHHHHHHHHHHHh
Confidence            644     456777888888899999999999988552   122  2334555555554322 11111222222222322


Q ss_pred             CC----------------------------CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169         233 KN----------------------------PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD  284 (440)
Q Consensus       233 ~~----------------------------~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~  284 (440)
                      .=                            |...-....-++..+..+|.+.++.++.+++.++.+++.....       
T Consensus       248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------  320 (968)
T KOG1060|consen  248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------  320 (968)
T ss_pred             cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------
Confidence            10                            1011122344566777888899999999999999999965421       


Q ss_pred             cCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Q psy9169         285 TGVVPRLVELLDSEETTILTAALRTVGNIATGND  318 (440)
Q Consensus       285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~  318 (440)
                      ..+++.|+.+|.++. .++...+..|..++...+
T Consensus       321 ~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~  353 (968)
T KOG1060|consen  321 TKIAKALVRLLRSNR-EVQYVVLQNIATISIKRP  353 (968)
T ss_pred             HHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcch
Confidence            245889999887653 567777777777765443

>PF05536 Neurochondrin: Neurochondrin

Probab=98.15  E-value=0.00025  Score=71.48  Aligned_cols=236  Identities=17%  Similarity=0.153  Sum_probs=166.1

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHhCCHHHHHHhccC-------CChHHHHHHHHHHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP--IDELIEAGVVPICVELLDD-------ENPNTQFEATWALTNI  144 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g~i~~Lv~lL~~-------~~~~i~~~a~~~L~nl  144 (440)
                      ..++..+.+|++.+.+.++.++..+.+++...+...  .+.+.++=+.+.|-++|.+       +....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            457888999999998888889999999876544211  2346777667888888854       2345677888999998


Q ss_pred             hCCCcHHHH--HHHhcCCHHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHH
Q psy9169         145 ASGTSEQTM--TVINANAIPKFLQLLSSPHL-NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN  221 (440)
Q Consensus       145 a~~~~~~~~--~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~  221 (440)
                      +.. ++...  .++  +-||.|+..+.+... .+...|+.+|..++.. +..+..+++.|.++.|.+.+.++  ......
T Consensus        85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~  158 (543)
T PF05536_consen   85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPNQ--SFQMEI  158 (543)
T ss_pred             cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHhC--cchHHH
Confidence            874 44432  333  679999999988776 9999999999999954 88889999999999999999873  456777


Q ss_pred             HHHHHHhhhhCCCCC---CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhh-HHHHHhcC----ChHHHHH
Q psy9169         222 IVWAISNLCRNKNPA---PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK-IQAVVDTG----VVPRLVE  293 (440)
Q Consensus       222 a~~~L~~l~~~~~~~---~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~-~~~l~~~g----~~~~Lv~  293 (440)
                      ++.++.+++......   ........+++.+...+..........+|..|..+-...+.. ........    +...+..
T Consensus       159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~  238 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD  238 (543)
T ss_pred             HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence            888888877654211   122233456677777777666677888899998887655311 11112223    3444555


Q ss_pred             hccCC-ChhHHHHHHHHHHHhhc
Q psy9169         294 LLDSE-ETTILTAALRTVGNIAT  315 (440)
Q Consensus       294 lL~~~-~~~v~~~al~~L~nl~~  315 (440)
                      +|.+. .+.-+.+|+...+.+..
T Consensus       239 iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  239 ILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHH
Confidence            55543 45677777777776653

>KOG1242|consensus

Probab=98.12  E-value=0.002  Score=63.47  Aligned_cols=284  Identities=14%  Similarity=0.107  Sum_probs=189.0

Q ss_pred             CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169         118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL  197 (440)
Q Consensus       118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  197 (440)
                      ++..|++-+..+.+.+|.....+|.-+......    ....-..+.+.+++......-+.-+.+.++.+..+..  -..+
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~----~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~  170 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKG----LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL  170 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc----cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence            577888888889999999988888777543111    1112356778888887777778888888888876642  2445


Q ss_pred             HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169         198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                      ...+++..|...+.+..+..-++.+..+.-..+..-. .........++|.+...+.+..+.++..+..+...+...-+.
T Consensus       171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            5678888888888766533333334444444444432 233345677888888888888889998888888777654432


Q ss_pred             hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       278 ~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ..-.    -++|.++.-+....+.....++..+|.++...+.+..... ..++|.+...|.+.++.+++.+..++-+++.
T Consensus       250 ~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~s  324 (569)
T KOG1242|consen  250 YAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGS  324 (569)
T ss_pred             chhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            2111    2355555555555677788999999999888877666444 4799999999999999999999999999986


Q ss_pred             C-ChHHHHHHhh-----cCcch-HHHHHHHHc-----------CcHHHHHHHhc----CCcHHHHHHHHHHHHhhCCC
Q psy9169         358 G-NSRQIDHVIQ-----EGELN-QMALLVEES-----------GGLEKLEALQH----HENETVYQKCYKIISMAFND  413 (440)
Q Consensus       358 ~-~~~~~~~~i~-----~~~~~-~~~~~l~~~-----------g~l~~l~~L~~----~~~~~v~~~a~~il~~~~~~  413 (440)
                      - ....|+.++.     ++... .....+...           -.+..+..+++    ..+..+.+++..|+.++..-
T Consensus       325 vidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L  402 (569)
T KOG1242|consen  325 VIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL  402 (569)
T ss_pred             hhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence            3 3333777665     11111 111111111           13444554444    44667889999998877553

>PF05536 Neurochondrin: Neurochondrin

Probab=98.12  E-value=0.00032  Score=70.78  Aligned_cols=235  Identities=12%  Similarity=0.105  Sum_probs=163.8

Q ss_pred             CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH---HHHHHhcCCHHHHHHhhCC-------CCHHHHHHHHHHHHHhh
Q psy9169         118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQ---TMTVINANAIPKFLQLLSS-------PHLNLAEQATWALGNIA  187 (440)
Q Consensus       118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~---~~~i~~~g~i~~L~~lL~~-------~~~~v~~~a~~~L~nl~  187 (440)
                      .+...+.+|+..+.+-++.++..++++...++..   ++.+.+.=+.+.|-++|++       +....+.-|+.+|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            3566777887777888999999999998776532   3357788788999999987       33678888999999999


Q ss_pred             CCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHH
Q psy9169         188 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA  267 (440)
Q Consensus       188 ~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~  267 (440)
                      .+ |+....---.+-||.|+.++..+.+.++...+..+|..++..+ .........+.++.|.+.+.+ .+.....++.+
T Consensus        86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            85 4432211223569999999998885699999999999999665 566666778999999999877 55667777777


Q ss_pred             HHHhccCChh-----hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHH-----HHHHHHcCCHHHHHHHh
Q psy9169         268 LSYISDGHND-----KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ-----TDCVIQAGGLQKMKKLL  337 (440)
Q Consensus       268 L~~l~~~~~~-----~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~l~~~g~l~~L~~ll  337 (440)
                      +.+++.....     ..+.+  ..+++.+-..+.......+-.++..|+.+....+..     ...-+-..+...|..++
T Consensus       163 L~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            7777654331     11111  144566666666666667888899999998766321     11112234566677777


Q ss_pred             cCC-ChhHHHHHHHHHHHHhc
Q psy9169         338 SSS-RVNIVKEAAWTISNITA  357 (440)
Q Consensus       338 ~~~-~~~i~~~a~~~L~nl~~  357 (440)
                      .+. .+.-|..+....+.+..
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHH
Confidence            765 35556666666666653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.11  E-value=0.00027  Score=68.59  Aligned_cols=271  Identities=15%  Similarity=0.124  Sum_probs=166.0

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHH-HhCCHH--HHHHhc-cCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          77 PEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELI-EAGVVP--ICVELL-DDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        77 ~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~i~--~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ..++.....+. .....+++..+...+-... |  +.++ .++++-  .....+ ..++..+|..++.+|.+-..   ..
T Consensus       136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~-P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv  209 (858)
T COG5215         136 EEMVRNVGDEQPVSGKCESLGICGYHCESEA-P--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FV  209 (858)
T ss_pred             HHHHHhccccCchHhHHHHHHHHHHHhhccC-H--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HH
Confidence            34444444333 4567778888887754333 3  3333 344332  233334 45667899999999988321   11


Q ss_pred             HHHHHhc----CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169         152 TMTVINA----NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS  227 (440)
Q Consensus       152 ~~~i~~~----g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~  227 (440)
                      +..+...    -.+...+..-+.++.+++..+..||..|..-.-.+-....+.-......+.+++.. .++...+...-+
T Consensus       210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWs  288 (858)
T COG5215         210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWS  288 (858)
T ss_pred             HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHH
Confidence            1122111    23445566667788999999999999887432222233334434444555666655 666666666555


Q ss_pred             hhhhCCCCC--------------CCH--HHHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169         228 NLCRNKNPA--------------PDF--EKIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKIQAVVD  284 (440)
Q Consensus       228 ~l~~~~~~~--------------~~~--~~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~~~l~~  284 (440)
                      .+|......              ..+  .....++|.|+.+|..       +|..+-..|..+|--.+....+   .+++
T Consensus       289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~  365 (858)
T COG5215         289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR  365 (858)
T ss_pred             HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH
Confidence            666432110              011  1245689999999954       2334555555555555533222   2222


Q ss_pred             cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      . ++..+-+-+.+++..-+..|.-++|.+..+..+....-+-..++|.+..++.++.-.++..++|+++.|+.+
T Consensus       366 p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         366 P-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             H-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            2 445555557788888899999999999998876555555567899999999977778999999999999854

>KOG1824|consensus

Probab=98.09  E-value=0.00044  Score=70.79  Aligned_cols=217  Identities=14%  Similarity=0.178  Sum_probs=150.9

Q ss_pred             CCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHH
Q psy9169         128 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQIL  207 (440)
Q Consensus       128 ~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~  207 (440)
                      ..+..++.-|+..|+.+..+...    .-..+.-..++..+.+++++++..|..+||+++.++-.        ..+|-++
T Consensus       830 ~s~~~ikvfa~LslGElgr~~~~----s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil  897 (1233)
T KOG1824|consen  830 KSSDSIKVFALLSLGELGRRKDL----SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFIL  897 (1233)
T ss_pred             CCchhHHHHHHhhhhhhccCCCC----CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHH
Confidence            34556778888888888654221    12235566888999999999999999999999964322        2477777


Q ss_pred             hhhCCCC-cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q psy9169         208 ALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG  286 (440)
Q Consensus       208 ~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g  286 (440)
                      ..+.++. ...++   +..|..+...............+...|.+-.....+..+.-...+|+.|+..+++.        
T Consensus       898 ~qi~sqpk~QyLL---LhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------  966 (1233)
T KOG1824|consen  898 EQIESQPKRQYLL---LHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------  966 (1233)
T ss_pred             HHHhcchHhHHHH---HHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------
Confidence            7776543 12222   22222222221111111223344444555455566778888999999999888754        


Q ss_pred             ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169         287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV  366 (440)
Q Consensus       287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~  366 (440)
                      ++|.|-..+.++.+..+..++.++.-.....+.-.+.++. ..+..++.++++++..+++.|..++...+.+.+..+.-+
T Consensus       967 LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDl 1045 (1233)
T KOG1824|consen  967 LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDL 1045 (1233)
T ss_pred             HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHH
Confidence            4899999999999989988888887777666655554444 467788899999999999999999999988888877777


Q ss_pred             hh
Q psy9169         367 IQ  368 (440)
Q Consensus       367 i~  368 (440)
                      +.
T Consensus      1046 lp 1047 (1233)
T KOG1824|consen 1046 LP 1047 (1233)
T ss_pred             HH
Confidence            65

>KOG1240|consensus

Probab=98.08  E-value=0.00018  Score=75.36  Aligned_cols=267  Identities=17%  Similarity=0.149  Sum_probs=169.5

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCC---CcHH
Q psy9169          76 VPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG---TSEQ  151 (440)
Q Consensus        76 i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~---~~~~  151 (440)
                      ++.+...+++ ...+.++.|+..+..+...-.    ++..=.-++|.++.++.++..++|..|+.+|+.+-..   -+..
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4444444443 346778888888887643322    2333346899999999999999999999999988542   1122


Q ss_pred             HHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHH---H-------------------------HHhcCC
Q psy9169         152 TMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARD---L-------------------------LLGLGT  202 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~---~-------------------------i~~~g~  202 (440)
                      -..+...=++|.|-.++.+.+ ..+|-.-+..|+.+|...-.+..   .                         -+..++
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V  579 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV  579 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence            223444457788888888733 44554444555555421000000   0                         000111


Q ss_pred             hHHHHhhhCCCCcHHHHHHHHHHHHhhhhC--CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169         203 MPQILALVQPNTPTTFLRNIVWAISNLCRN--KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ  280 (440)
Q Consensus       203 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~  280 (440)
                      =.....++..+. +-+++..+..|.-||.-  +...     .--+++.|+.+|++.|..++..-...|..++-.-.-+  
T Consensus       580 ~~~v~sLlsd~~-~~Vkr~Lle~i~~LC~FFGk~ks-----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--  651 (1431)
T KOG1240|consen  580 EQMVSSLLSDSP-PIVKRALLESIIPLCVFFGKEKS-----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--  651 (1431)
T ss_pred             HHHHHHHHcCCc-hHHHHHHHHHHHHHHHHhhhccc-----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--
Confidence            122223333333 55666666666666632  1111     1236788999999999999988888888776432211  


Q ss_pred             HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                       -++.+++|.|.+-|.++.+.|...|+.++.-|+...--....+.  .+++....+|-+++..||..++..|..++.
T Consensus       652 -s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  652 -SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             -eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence             13456799999999999999999999999999875433333333  356777888899999999999999988775

>KOG4646|consensus

Probab=98.07  E-value=3.1e-05  Score=60.83  Aligned_cols=133  Identities=9%  Similarity=0.072  Sum_probs=107.7

Q ss_pred             CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169         201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ  280 (440)
Q Consensus       201 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~  280 (440)
                      +.+..|+.-.....+.+.+..++.-|.|++.++ ..........++..++..|...|+.+...++..|+|+|..... ..
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n-~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN-AK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH-HH
Confidence            346677777777777899999999999999876 3444455578899999999999999999999999999976654 48


Q ss_pred             HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHH
Q psy9169         281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK  335 (440)
Q Consensus       281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~  335 (440)
                      .+.+++.+|.++..++++...+...|+.++..++.+.-.....+...-++..+..
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r  148 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR  148 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence            8899999999999999999889999999999999887766666665444444433

>KOG0212|consensus

Probab=98.07  E-value=0.00059  Score=66.14  Aligned_cols=236  Identities=14%  Similarity=0.144  Sum_probs=158.1

Q ss_pred             CCHHHHHHHhc----CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-hCCHHHHHHhccCCChHHHHHHHHH----HHHH
Q psy9169          74 MTVPEMIEGMK----SSNPKMRMIATRSARKMLSKERHPPIDELIE-AGVVPICVELLDDENPNTQFEATWA----LTNI  144 (440)
Q Consensus        74 ~~i~~lv~~L~----s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~i~~Lv~lL~~~~~~i~~~a~~~----L~nl  144 (440)
                      ..++.++.+|+    ..++..+..-+..+.-+-+.   |.++.+-- ..+++.|..+|.+++++++..+=.+    |..|
T Consensus       163 FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~---P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI  239 (675)
T KOG0212|consen  163 FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV---PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI  239 (675)
T ss_pred             cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC---CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            44555555554    66888998888888766432   33333321 4677888889999999999665554    4444


Q ss_pred             hCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHH---
Q psy9169         145 ASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN---  221 (440)
Q Consensus       145 a~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~---  221 (440)
                      .+. |...   --...++.++.-+.++++.++..|+.-|..+..-.+.. -...-.|++..++.++.+.....+...   
T Consensus       240 ~s~-P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~  314 (675)
T KOG0212|consen  240 RSS-PSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQM  314 (675)
T ss_pred             hcC-cccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence            433 2211   12357899999999999999998887776666432221 222356777777777775553222222   


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh
Q psy9169         222 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT  301 (440)
Q Consensus       222 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~  301 (440)
                      .-..+..++.......+ .....++..+.+.+.++..+.+..++.-+..+-...+.. -......+.+.|+.-|.+++..
T Consensus       315 ~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~  392 (675)
T KOG0212|consen  315 VNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDE  392 (675)
T ss_pred             HHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhH
Confidence            22234445544322222 455778899999999999999999988887777665544 2233457899999999999999


Q ss_pred             HHHHHHHHHHHhhcCChH
Q psy9169         302 ILTAALRTVGNIATGNDH  319 (440)
Q Consensus       302 v~~~al~~L~nl~~~~~~  319 (440)
                      |...++..++++|.....
T Consensus       393 vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  393 VVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHHHHHHhcCccc
Confidence            999999999999986543

>KOG1242|consensus

Probab=98.04  E-value=0.0035  Score=61.85  Aligned_cols=307  Identities=14%  Similarity=0.147  Sum_probs=193.6

Q ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ....++.+++.+..+++.+|.....++.-+..........     -+.+.+.+++......-+..+++.+..+..+..  
T Consensus        94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~-----~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--  166 (569)
T KOG1242|consen   94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGE-----YVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--  166 (569)
T ss_pred             hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHH-----HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--
Confidence            3445777888888899999999999988775443322222     246677778877777888889999998887643  


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHH-HHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---CCCcHHHHHHHHHHHH
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQ-ATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNTPTTFLRNIVWAIS  227 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~-a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~  227 (440)
                      ...+.+.+.+..|...+.+.+...+.. +..+.-..+..-..    ..+-.+++.+-.++.   +.. ..++..+..+..
T Consensus       167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~----~~EPyiv~~lp~il~~~~d~~-~~Vr~Aa~~a~k  241 (569)
T KOG1242|consen  167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP----PFEPYIVPILPSILTNFGDKI-NKVREAAVEAAK  241 (569)
T ss_pred             HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC----CCCchHHhhHHHHHHHhhccc-hhhhHHHHHHHH
Confidence            456667789999999998866444332 22222222211000    112233444444444   333 667777777766


Q ss_pred             hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169         228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL  307 (440)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al  307 (440)
                      .+.+.-++    ..+..++|.++.-+..........++..++.++...+..... .-..++|.+.+.|.+..++++..+.
T Consensus       242 ai~~~~~~----~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~-~lp~iiP~lsevl~DT~~evr~a~~  316 (569)
T KOG1242|consen  242 AIMRCLSA----YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL-CLPDLIPVLSEVLWDTKPEVRKAGI  316 (569)
T ss_pred             HHHHhcCc----chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH-HHhHhhHHHHHHHccCCHHHHHHHH
Confidence            66654322    234556777666665557788899999999999888766443 3468899999999999999999999


Q ss_pred             HHHHHhhcC--ChHHHHHHH------------------------------HcCCHHHHHHHhc----CCChhHHHHHHHH
Q psy9169         308 RTVGNIATG--NDHQTDCVI------------------------------QAGGLQKMKKLLS----SSRVNIVKEAAWT  351 (440)
Q Consensus       308 ~~L~nl~~~--~~~~~~~l~------------------------------~~g~l~~L~~ll~----~~~~~i~~~a~~~  351 (440)
                      .+|-+++.-  +++ ++.++                              +.-.+..++.++.    ..+..+++.++.+
T Consensus       317 ~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~I  395 (569)
T KOG1242|consen  317 ETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAII  395 (569)
T ss_pred             HHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence            999888652  111 11111                              1223344444443    3355677888888


Q ss_pred             HHHHhcC--ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169         352 ISNITAG--NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA  410 (440)
Q Consensus       352 L~nl~~~--~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  410 (440)
                      +.|+|.-  .+..+.            ..+.+  .++.+..-.....|+++.-|..+|...
T Consensus       396 idNm~~LveDp~~la------------pfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  396 IDNMCKLVEDPKDLA------------PFLPS--LLPGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             HHHHHHhhcCHHHHh------------hhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence            8888753  232222            22221  145566656666888888888877444

>KOG4413|consensus

Probab=98.03  E-value=0.0017  Score=58.95  Aligned_cols=286  Identities=12%  Similarity=0.092  Sum_probs=189.3

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHH--HHhccCCChHHHHHHHHHHHHHhCCCcH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPIC--VELLDDENPNTQFEATWALTNIASGTSE  150 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~L--v~lL~~~~~~i~~~a~~~L~nla~~~~~  150 (440)
                      ...++.++..+...|.++-..|...+..+....  .....+.++.....+  ..+-..-+.-.|......+..|.+-+++
T Consensus       127 aeilklildcIggeddeVAkAAiesikrialfp--aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  127 AEILKLILDCIGGEDDEVAKAAIESIKRIALFP--AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH--HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence            345677888888888888888888888775332  235566666554433  2222344566788888999999999999


Q ss_pred             HHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc-HHHHHHHHHHHHh
Q psy9169         151 QTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP-TTFLRNIVWAISN  228 (440)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~-~~~~~~a~~~L~~  228 (440)
                      ....+-.+|.+..|..-|+. .+.-++..++.....++.. ...|+.+-+.|.|+.+.+++...++ +--.-.++.....
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgk  283 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK  283 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence            99999999999999999987 5566778888888888854 4456778889999999999974332 2222223444444


Q ss_pred             hhhCCC---CCCCHH--HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCC--hHHHHHhccCCC-h
Q psy9169         229 LCRNKN---PAPDFE--KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGV--VPRLVELLDSEE-T  300 (440)
Q Consensus       229 l~~~~~---~~~~~~--~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~--~~~Lv~lL~~~~-~  300 (440)
                      +.....   ..++..  ...-++.-..+++..+|+..+..|..+++.|..+.... +.+.+.|-  ..+++.-..+.+ .
T Consensus       284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa-dlllkTgppaaehllarafdqnah  362 (524)
T KOG4413|consen  284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA-DLLLKTGPPAAEHLLARAFDQNAH  362 (524)
T ss_pred             HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh-HHHhccCChHHHHHHHHHhccccc
Confidence            433221   011111  11223444556778899999999999999998765543 66666652  344444333333 3


Q ss_pred             hHHHHHHHHHHHhhcCC---hH----------HHHHHHHc-------CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh
Q psy9169         301 TILTAALRTVGNIATGN---DH----------QTDCVIQA-------GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS  360 (440)
Q Consensus       301 ~v~~~al~~L~nl~~~~---~~----------~~~~l~~~-------g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  360 (440)
                      .-+..++++|.+|+...   ++          .+..+.++       .=+..+..+++.+.+.++..+..++..|++...
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPW  442 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPW  442 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcH
Confidence            45678889999887521   11          11122221       335667788888889999999999999987665


Q ss_pred             HH
Q psy9169         361 RQ  362 (440)
Q Consensus       361 ~~  362 (440)
                      .+
T Consensus       443 al  444 (524)
T KOG4413|consen  443 AL  444 (524)
T ss_pred             HH
Confidence            43

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.02  E-value=9.4e-05  Score=66.47  Aligned_cols=192  Identities=13%  Similarity=0.100  Sum_probs=120.9

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCC-CCCcHHHHHH--hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcC
Q psy9169          83 MKSSNPKMRMIATRSARKMLSKE-RHPPIDELIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINAN  159 (440)
Q Consensus        83 L~s~~~~~~~~a~~~l~~lls~~-~~~~~~~ii~--~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g  159 (440)
                      -.+.+++.+..|+..++.++... .......++.  ..+++.+...+.+....+...|+.++..++..-....... -..
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~   94 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI   94 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence            35789999999999999998766 1122333332  2566778888877788899999999999986544333333 235


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC-CCC
Q psy9169         160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP-APD  238 (440)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~  238 (440)
                      ++|.|+..+.+++..+++.|..+|..++...+.....     .++.+...+.+. ++.++..++..+..+...-+. ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence            7899999999999999999999999999775411111     134444444444 488989888888887765431 111


Q ss_pred             H---HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHH
Q psy9169         239 F---EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA  281 (440)
Q Consensus       239 ~---~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~  281 (440)
                      .   .....+++.+..++.+.+++++..|-.++..+...-++....
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~  214 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAES  214 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhcc
Confidence            1   124678999999999999999999999998887665554333

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2734|consensus

Probab=98.02  E-value=0.0021  Score=60.71  Aligned_cols=227  Identities=11%  Similarity=0.115  Sum_probs=158.8

Q ss_pred             cHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCC---------cHHHHHHHhcCCHHHHHHhhCCCCHHH----
Q psy9169         109 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT---------SEQTMTVINANAIPKFLQLLSSPHLNL----  175 (440)
Q Consensus       109 ~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~---------~~~~~~i~~~g~i~~L~~lL~~~~~~v----  175 (440)
                      -...+++.++++.|+++|.+.|.++....+..|..++..+         ......+++.++++.|++.+..-++.+    
T Consensus       117 LYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea  196 (536)
T KOG2734|consen  117 LYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEA  196 (536)
T ss_pred             HHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhh
Confidence            3568899999999999999999999999999999987532         134567889999999999997644433    


Q ss_pred             --HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC-CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHh
Q psy9169         176 --AEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL  252 (440)
Q Consensus       176 --~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  252 (440)
                        ...++..+-|+..-.+.+...+.+.|.+..|+.-+... .-..-...+...++-+..+.+........-.++..++.-
T Consensus       197 ~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~  276 (536)
T KOG2734|consen  197 DGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQ  276 (536)
T ss_pred             hhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhh
Confidence              44566778888888888888888889999988855432 223445566667776666654333222222334444433


Q ss_pred             h----cCC-----CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh--HHH
Q psy9169         253 I----HTT-----DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND--HQT  321 (440)
Q Consensus       253 l----~~~-----d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~  321 (440)
                      +    .++     ..+.......+|+.+......+ ..+++...+....-+++. ....+..|+++|-.+..|.+  ...
T Consensus       277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C  354 (536)
T KOG2734|consen  277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC  354 (536)
T ss_pred             cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence            3    121     3467788888888888766655 555666556666666665 44567889999999998877  566


Q ss_pred             HHHHHcCCHHHHHHHh
Q psy9169         322 DCVIQAGGLQKMKKLL  337 (440)
Q Consensus       322 ~~l~~~g~l~~L~~ll  337 (440)
                      ..+++.+++..+..+.
T Consensus       355 ~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  355 NKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHHHHHhHHHHHHHH
Confidence            7777777666666543

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.02  E-value=0.00024  Score=64.08  Aligned_cols=233  Identities=9%  Similarity=0.108  Sum_probs=149.8

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHH-HHhCCHHHHHHhcc--CCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDEL-IEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~i-i~~g~i~~Lv~lL~--~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      |-+++++-++.+++.|+.++.++.-...  .+..+ .+..+-.+++++++  -...++|..++.+++.++.. +++.+.+
T Consensus       154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e--~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi  230 (432)
T COG5231         154 LGKLSQLIDFLTRLFAVSCLSNLEFDVE--KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDI  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHH--HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHH
Confidence            3345556677788888898888754322  12222 24456677888883  24578999999999999854 5555333


Q ss_pred             Hh-cCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCch--hHHHHHhcCChHHHHhhhCC--CCcHHHHHHHHHH----
Q psy9169         156 IN-ANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGAR--ARDLLLGLGTMPQILALVQP--NTPTTFLRNIVWA----  225 (440)
Q Consensus       156 ~~-~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~--~r~~i~~~g~i~~L~~ll~~--~~~~~~~~~a~~~----  225 (440)
                      -. ...+.-|+++.+... ..|...++.++.|++...|.  .....+ .|-+.+-++.|..  -.+++++...-..    
T Consensus       231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l  309 (432)
T COG5231         231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRL  309 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence            21 256777777777644 78889999999999975432  222233 3334444444432  1223333222111    


Q ss_pred             -------------HHhh----hhCCCCCCC--H-----H----HHhhHHHHHHHhhcCCCHH-HHHHHHHHHHHhccCCh
Q psy9169         226 -------------ISNL----CRNKNPAPD--F-----E----KIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHN  276 (440)
Q Consensus       226 -------------L~~l----~~~~~~~~~--~-----~----~~~~~~~~L~~ll~~~d~~-i~~~a~~~L~~l~~~~~  276 (440)
                                   +..|    ..+.++...  +     .    ....++..|.++++..++. ...-||.-|..+....+
T Consensus       310 ~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P  389 (432)
T COG5231         310 VQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP  389 (432)
T ss_pred             HhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc
Confidence                         1111    111212211  0     1    1135678888888876655 66778899999999999


Q ss_pred             hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      +....+.+.|+-..++.++.|++++|+-+|+.++.-+.+
T Consensus       390 E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         390 EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            998999999999999999999999999999999876643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.02  E-value=1.1e-05  Score=54.46  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169         300 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI  355 (440)
Q Consensus       300 ~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl  355 (440)
                      +.++..|+++||+++...+...+.... .+++.|..+|.++++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999999888877776444 6899999999999999999999999986

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.99  E-value=2.8e-05  Score=58.29  Aligned_cols=86  Identities=27%  Similarity=0.421  Sum_probs=69.7

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHH
Q psy9169         246 LPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV  324 (440)
Q Consensus       246 ~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l  324 (440)
                      +|.|++.+ ++.++.++..++++|+.+-  ++         .+++.|+.++.++++.++..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57888888 8899999999999999553  11         23899999999999999999999999872          


Q ss_pred             HHcCCHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy9169         325 IQAGGLQKMKKLLSSSR-VNIVKEAAWTIS  353 (440)
Q Consensus       325 ~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~  353 (440)
                       +...++.|.+++.+++ ..++..|+++|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             2247888999888764 567999999885

>KOG0212|consensus

Probab=97.96  E-value=0.00044  Score=67.02  Aligned_cols=317  Identities=11%  Similarity=0.061  Sum_probs=184.0

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHH---HHHHHHhCCCc
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEAT---WALTNIASGTS  149 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~---~~L~nla~~~~  149 (440)
                      ...+++++..+.+.|..+++.||..+.++....+...  ...-..+...+.++..+++..++..|=   +.+..+.....
T Consensus        83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~  160 (675)
T KOG0212|consen   83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA  160 (675)
T ss_pred             HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence            4567888999999999999999999888865333111  111123444555555566665553321   22233322211


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL-GLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                         ..+-=.+.+|.|-.-+...++..|.-.+.-|..+-.. |.. +.+- -..+++.|..+|.++. .+++.-+-.++++
T Consensus       161 ---~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~-~m~~yl~~~ldGLf~~LsD~s-~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  161 ---STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDL-EMISYLPSLLDGLFNMLSDSS-DEVRTLTDTLLSE  234 (675)
T ss_pred             ---cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcH-HHHhcchHHHHHHHHHhcCCc-HHHHHHHHHHHHH
Confidence               1222235566666666667777777666555555332 332 3222 2346677778887766 7888777777777


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh-HHHHHH
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT-ILTAAL  307 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~-v~~~al  307 (440)
                      +...-...+........++.++.-+.++++.++..|+.-|..+..-.+.. -...-+|++..++.++.+..+. ++..+.
T Consensus       235 fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~  313 (675)
T KOG0212|consen  235 FLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQ  313 (675)
T ss_pred             HHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence            66543233333345678899999999999999988877777766554432 2334468888888888776653 443333


Q ss_pred             HH---HHHhhcCChHHHHHHHHcC-CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcC
Q psy9169         308 RT---VGNIATGNDHQTDCVIQAG-GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESG  383 (440)
Q Consensus       308 ~~---L~nl~~~~~~~~~~l~~~g-~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g  383 (440)
                      ..   +..++.. +...+. ++.| +++.+...+.+.....|-.+.--+..+-...+.++-...              ..
T Consensus       314 ~~n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~--------------~~  377 (675)
T KOG0212|consen  314 MVNGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN--------------DS  377 (675)
T ss_pred             HHHHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc--------------cH
Confidence            22   2222221 111111 4433 678888888888777777776666666655544422111              11


Q ss_pred             cHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169         384 GLEKLEALQHHENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       384 ~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~  414 (440)
                      ....|..-+...+++|..++..++.....++
T Consensus       378 if~tLL~tLsd~sd~vvl~~L~lla~i~~s~  408 (675)
T KOG0212|consen  378 IFLTLLKTLSDRSDEVVLLALSLLASICSSS  408 (675)
T ss_pred             HHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence            2233333344555566666666666555433

>KOG2259|consensus

Probab=97.96  E-value=0.00079  Score=66.49  Aligned_cols=193  Identities=12%  Similarity=0.154  Sum_probs=120.0

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHH---HHHHhhhhCCC--CCCC
Q psy9169         164 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV---WAISNLCRNKN--PAPD  238 (440)
Q Consensus       164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~---~~L~~l~~~~~--~~~~  238 (440)
                      |..+..+.+..|+.+|+.+|..+... -..-..     .....+..+.++. ..++..|+   |..+|.+-.+.  ...+
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhccc-ccccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            56666666666777777766666542 111111     2333455555444 56666653   44445542211  1112


Q ss_pred             HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH--------------------------------------
Q psy9169         239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ--------------------------------------  280 (440)
Q Consensus       239 ~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~--------------------------------------  280 (440)
                      ....-.++..+...+.+-+..++..|..+|+.+...+.+.++                                      
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a  355 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA  355 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence            222345566666666666667777777777665544433333                                      


Q ss_pred             ------------HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHH
Q psy9169         281 ------------AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA  348 (440)
Q Consensus       281 ------------~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a  348 (440)
                                  .++.+|+...++.-|.+.-.+|+.+|...++.|+.+.+....     ..++.|++++.+....+|..|
T Consensus       356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a  430 (823)
T KOG2259|consen  356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA  430 (823)
T ss_pred             cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence                        234445556666666665668999999999999998887665     346789999999889999999


Q ss_pred             HHHHHHHhcC---ChHHHHHHhh
Q psy9169         349 AWTISNITAG---NSRQIDHVIQ  368 (440)
Q Consensus       349 ~~~L~nl~~~---~~~~~~~~i~  368 (440)
                      ..+|..|+.+   ..+|...+++
T Consensus       431 i~aL~~Is~~l~i~eeql~~il~  453 (823)
T KOG2259|consen  431 IFALTMISVHLAIREEQLRQILE  453 (823)
T ss_pred             HHHHHHHHHHheecHHHHHHHHH
Confidence            9999999865   5555555543

>KOG2259|consensus

Probab=97.96  E-value=0.00028  Score=69.57  Aligned_cols=266  Identities=13%  Similarity=0.083  Sum_probs=166.9

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHH---HHHHHHHh--CCCcHHHH
Q psy9169          79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEA---TWALTNIA--SGTSEQTM  153 (440)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a---~~~L~nla--~~~~~~~~  153 (440)
                      ++.+..+.|+.++..|+..+..+-...+   ..    .-.....++++.+++..+|..|   +|+++|..  ....+..+
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFK---LS----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhccccc---cc----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            6666777888888888877765522111   11    1246778889999999999877   66667766  22222223


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh--hh
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL--CR  231 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l--~~  231 (440)
                      .-....++..++..+.+-+..||..|+.+||.+-.-+.++-.+-+...    ++.-++...  ...+..-...++-  ++
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKK----lms~lRRkr--~ahkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKK----LMSRLRRKR--TAHKRPKALYSSGEWSS  349 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHH----Hhhhhhhhh--hcccchHHHHhcCCccc
Confidence            223346788899999999999999999999988655444322222222    222111000  0000000111111  11


Q ss_pred             CCC---CCC--------CHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCCh
Q psy9169         232 NKN---PAP--------DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET  300 (440)
Q Consensus       232 ~~~---~~~--------~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~  300 (440)
                      ++.   ..+        .-.+..|.-..++.-|.++=.+++.+|...++.|+...+....     ..+..|+.++.+...
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIE  424 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHH
Confidence            110   111        1112245556667777766779999999999999988775533     247899999999888


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh
Q psy9169         301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ  368 (440)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~  368 (440)
                      .|+..|+.+|..|+..      ..++...++.+...|.+..+++|...--.|.+.=-.+.+.+..++.
T Consensus       425 ~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~  486 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVA  486 (823)
T ss_pred             HHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            9999999999988754      2334445777888888888888888777777765556666555543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.94  E-value=1.8e-05  Score=53.47  Aligned_cols=55  Identities=31%  Similarity=0.575  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy9169         131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI  186 (440)
Q Consensus       131 ~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  186 (440)
                      |.+|..|+|+|++++...++.... ....+++.|+.+|.++++.||..|+|+|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            578999999999998776665555 4467999999999999999999999999986

...

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.93  E-value=0.014  Score=60.21  Aligned_cols=142  Identities=18%  Similarity=0.206  Sum_probs=111.7

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .-++.+++.+.+.|.+++...-..+..+....+   -..+.   +++.+.+=+.++|+.+|..|+++++.+-.  ++.  
T Consensus        55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P---~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el--  124 (757)
T COG5096          55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKP---ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KEL--  124 (757)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH---HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHH--
Confidence            446788888889999988888777777754433   22222   58888899999999999999999998853  221  


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                         -..+++++.+++.++++.||..|+.++.++-.-++   +.+.+.|.+..+..++.+.+ +.+.++|+.+|..+...
T Consensus       125 ---~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         125 ---LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSD-PIVIANALASLAEIDPE  196 (757)
T ss_pred             ---HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCC-chHHHHHHHHHHHhchh
Confidence               22568999999999999999999999999985543   45667778888888887766 89999999999988865

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.92  E-value=0.00012  Score=65.91  Aligned_cols=186  Identities=12%  Similarity=0.040  Sum_probs=118.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCC--chhHHHHHh--cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhh
Q psy9169         169 SSPHLNLAEQATWALGNIAGDG--ARARDLLLG--LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI  244 (440)
Q Consensus       169 ~~~~~~v~~~a~~~L~nl~~~~--~~~r~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  244 (440)
                      .+.+.+.+..++.-|..++..+  ......+..  ..++..+...+.+.. ..+...++.++..++...... -......
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~-~~~~~~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSH-FEPYADI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGG-GHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHh-HHHHHHH
Confidence            5567888999999998888554  222222221  145556666665444 679999999999999775332 2234678


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh---HHH
Q psy9169         245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND---HQT  321 (440)
Q Consensus       245 ~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~---~~~  321 (440)
                      ++|.|+..+.+....+...|..+|..++...... ..+    +++.+...+.+.++.++..++..+..+....+   ...
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            9999999999999999999999999999765511 111    15677777899999999999999999987555   111


Q ss_pred             H-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169         322 D-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       322 ~-~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                      . ...-..+++.+...+.++++.+|..|-.++..+...-++
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            1 111134788899999999999999988888887654443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1240|consensus

Probab=97.87  E-value=0.00069  Score=71.15  Aligned_cols=270  Identities=11%  Similarity=0.110  Sum_probs=172.3

Q ss_pred             HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh---CCCchhH
Q psy9169         119 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA---GDGARAR  194 (440)
Q Consensus       119 i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~---~~~~~~r  194 (440)
                      ++.+...+ .-...+.+..|+..|..++.....   ...=..++|.++.++.++...||..|+.+|..+-   .+-+..-
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d  500 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD  500 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence            55555555 334567888899998888764322   1222368999999999999999999999888776   2333333


Q ss_pred             HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC-----------------CCCCC----------CHHHH-hhHH
Q psy9169         195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN-----------------KNPAP----------DFEKI-KICL  246 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-----------------~~~~~----------~~~~~-~~~~  246 (440)
                      ..++..-++|.|-.++.+.+...++...+.+|..|+..                 .++..          ..... ..+-
T Consensus       501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~  580 (1431)
T KOG1240|consen  501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE  580 (1431)
T ss_pred             chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence            44555667888888887754344444444444444320                 11111          01111 2233


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH
Q psy9169         247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ  326 (440)
Q Consensus       247 ~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~  326 (440)
                      .....++..+++-++...+..|.-||..-...   --+.=++++|+.+|.+.++.++..-...|.-++.--.   ..-++
T Consensus       581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~s  654 (1431)
T KOG1240|consen  581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVS  654 (1431)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHH
Confidence            44556777777788888888888888321100   0112368999999999988877666555554433111   01234


Q ss_pred             cCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHH
Q psy9169         327 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKI  406 (440)
Q Consensus       327 ~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~i  406 (440)
                      .+++|.|.+-|.++++.|...|..+|+-|+...--...+++          .     .++.+..++-|+|.=|+..++.+
T Consensus       655 eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~----------~-----i~~~v~PlL~hPN~WIR~~~~~i  719 (1431)
T KOG1240|consen  655 EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK----------D-----ILQDVLPLLCHPNLWIRRAVLGI  719 (1431)
T ss_pred             HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH----------H-----HHHhhhhheeCchHHHHHHHHHH
Confidence            57889999999999999999999999999864321111111          1     24456678999999999999988


Q ss_pred             HHhhCC
Q psy9169         407 ISMAFN  412 (440)
Q Consensus       407 l~~~~~  412 (440)
                      |..-..
T Consensus       720 I~~~~~  725 (1431)
T KOG1240|consen  720 IAAIAR  725 (1431)
T ss_pred             HHHHHh
Confidence            876544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.83  E-value=5.3e-05  Score=47.53  Aligned_cols=38  Identities=45%  Similarity=0.776  Sum_probs=35.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         319 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       319 ~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      +....+++.|+++.|+.++.++++.+++.|+|+|+||+
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            46778899999999999999889999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.82  E-value=0.003  Score=60.63  Aligned_cols=234  Identities=11%  Similarity=0.037  Sum_probs=162.6

Q ss_pred             hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchh
Q psy9169         116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARA  193 (440)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~  193 (440)
                      ....+.+..++-+++.+++..+.+++..+..+ ++....+.+.++--.++.-|..++  ..=|++|+..+..+.......
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            33455555455344499999999999988866 566777888887777777777644  556789999998887542111


Q ss_pred             HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169         194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD  273 (440)
Q Consensus       194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~  273 (440)
                        ..+..|++..++.+..+.+ ..++..|..+|..++-..   ++.....+++..|...+.++..++...++.++.++.+
T Consensus       103 --~~~~~~vvralvaiae~~~-D~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd  176 (371)
T PF14664_consen  103 --KEIPRGVVRALVAIAEHED-DRLRRICLETLCELALLN---PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD  176 (371)
T ss_pred             --ccCCHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence              1235678889999988866 789999999999999776   5567778999999988877766788999999999998


Q ss_pred             CChhhHHHHHhcCChHHHHHhccCC-------Ch--hHHHHHHHHHHHhhcCChHHHHHHHHc-CCHHHHHHHhcCCChh
Q psy9169         274 GHNDKIQAVVDTGVVPRLVELLDSE-------ET--TILTAALRTVGNIATGNDHQTDCVIQA-GGLQKMKKLLSSSRVN  343 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~lL~~~-------~~--~v~~~al~~L~nl~~~~~~~~~~l~~~-g~l~~L~~ll~~~~~~  343 (440)
                      .+..+ +.+...--++.++.-+.+.       +.  +....+..++..+....+...-.-.+. .++..|+..|..+.+.
T Consensus       177 ~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~  255 (371)
T PF14664_consen  177 SPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPE  255 (371)
T ss_pred             Ccchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHH
Confidence            77654 3333222244444433322       22  234455566666655544322222222 5788899999999988


Q ss_pred             HHHHHHHHHHHHhc
Q psy9169         344 IVKEAAWTISNITA  357 (440)
Q Consensus       344 i~~~a~~~L~nl~~  357 (440)
                      +++...-.+..+..
T Consensus       256 ir~~Ildll~dllr  269 (371)
T PF14664_consen  256 IRKAILDLLFDLLR  269 (371)
T ss_pred             HHHHHHHHHHHHHC
Confidence            99998888888775

>KOG2062|consensus

Probab=97.81  E-value=0.001  Score=66.55  Aligned_cols=204  Identities=20%  Similarity=0.260  Sum_probs=123.0

Q ss_pred             CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169         117 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD  195 (440)
Q Consensus       117 g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (440)
                      |+...|...| ..+++.++.-++.-|+-.+.++...       .+...|-..|..++.-.-+.|..++|-+.-.....  
T Consensus       413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~-------eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~--  483 (929)
T KOG2062|consen  413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE-------EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ--  483 (929)
T ss_pred             cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH-------HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH--
Confidence            3455666666 4455666666666666555553321       23444555555555444455555555554332111  


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHH--Hhcc
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS--YISD  273 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~--~l~~  273 (440)
                           .++.-++..-.......+.+-..--++-...+.        ..++-|.+-+++.+.|+-++.....++.  +...
T Consensus       484 -----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr--------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT  550 (929)
T KOG2062|consen  484 -----EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR--------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGT  550 (929)
T ss_pred             -----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh--------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc
Confidence                 123333333333333455555444444433332        1245567778888888888877766553  2222


Q ss_pred             CChhhHHHHHhcCChHHHHHh-ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHH
Q psy9169         274 GHNDKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWT  351 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~-~~~~~i~~~a~~~  351 (440)
                      ++         .+++..|+.. .++.+.+|+..|.-+||-++..++++         ++..+.+|. +.++.||..|+.+
T Consensus       551 gn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~A  612 (929)
T KOG2062|consen  551 GN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMA  612 (929)
T ss_pred             Cc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHH
Confidence            22         3457777777 56778899999999999999988865         344555554 5589999999999


Q ss_pred             HHHHhcCCh
Q psy9169         352 ISNITAGNS  360 (440)
Q Consensus       352 L~nl~~~~~  360 (440)
                      |+-.|+|+.
T Consensus       613 LGIaCAGtG  621 (929)
T KOG2062|consen  613 LGIACAGTG  621 (929)
T ss_pred             HhhhhcCCC
Confidence            999998753

>KOG1077|consensus

Probab=97.81  E-value=0.014  Score=58.38  Aligned_cols=267  Identities=13%  Similarity=0.161  Sum_probs=156.5

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ..+..+.+.|.|.|+..+..|+.++.++-+.+-   .+.+ .. -||   ++|  .+..+-++..|+.+|..+-..+++.
T Consensus       111 lvin~iknDL~srn~~fv~LAL~~I~niG~re~---~ea~-~~-DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl  182 (938)
T KOG1077|consen  111 LVINSIKNDLSSRNPTFVCLALHCIANIGSREM---AEAF-AD-DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL  182 (938)
T ss_pred             HHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhH---HHHh-hh-hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc
Confidence            445566667778888888888888887743221   1111 11 133   555  3344567788888888887765542


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC-CC-----------cHHHH
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP-NT-----------PTTFL  219 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~-~~-----------~~~~~  219 (440)
                         +-..+-...++.+|.+.+..+...+...+--|+...++.....+- -.+..|.++... +.           .+=+.
T Consensus       183 ---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~  258 (938)
T KOG1077|consen  183 ---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ  258 (938)
T ss_pred             ---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence               223367888999999998888888888888888666554222211 122223333221 11           13344


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC----CC---HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH
Q psy9169         220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TD---VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV  292 (440)
Q Consensus       220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----~d---~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv  292 (440)
                      ..++.+|.++-.-. .+.......+++..+....+.    .+   ......++.-..+++.+.+.--+.+.  .++..|-
T Consensus       259 vKl~rlLq~~p~~~-D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg  335 (938)
T KOG1077|consen  259 VKLLRLLQIYPTPE-DPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLG  335 (938)
T ss_pred             HHHHHHHHhCCCCC-CchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHH
Confidence            44555554441111 111122223344444333331    11   12233333333344433332223332  4588899


Q ss_pred             HhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcC
Q psy9169         293 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       293 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~  358 (440)
                      ++|.+.++.++.-|+..+..+++..+ ..+.+..+  .+.++..|+ ..+-.+++.|.-.|..+|..
T Consensus       336 ~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~  399 (938)
T KOG1077|consen  336 QFLSHRETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV  399 (938)
T ss_pred             HHhhcccccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence            99999999999999999999998754 33334443  778888888 56779999999999999864

>KOG1060|consensus

Probab=97.80  E-value=0.021  Score=58.00  Aligned_cols=204  Identities=13%  Similarity=0.143  Sum_probs=144.4

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .-..|..+|.|......+.|+.-|..+.....+       -+...|.+|+...+.+++++...---|...|...++..  
T Consensus        36 ~~~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--  106 (968)
T KOG1060|consen   36 RHDDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--  106 (968)
T ss_pred             ChHHHHHHHhccccHHHHHHHHHHHHHHhcCCc-------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--
Confidence            456799999999999999999988888766653       23468889999999999999988888888887655421  


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---CCCcHHHHHHHHHHHHhhhh
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~  231 (440)
                         .=-|.++-+-|+++|+.+|..|+.+|..|--.       +    +.|.++-.++   .+..+-+++.|+.++-.|-+
T Consensus       107 ---LLSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~----IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs  172 (968)
T KOG1060|consen  107 ---LLSINTFQKALKDPNQLIRASALRVLSSIRVP-------M----IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS  172 (968)
T ss_pred             ---eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------h----HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc
Confidence               12478888999999999999888888765322       1    2233333332   33448899999999999987


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG  311 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~  311 (440)
                      -...     ....++..+-.+|.+.++-+.-.|+.++-.+|...-+.+     ++-..+|..+|.+-+..=+...+..|.
T Consensus       173 Ld~e-----~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLI-----HknyrklC~ll~dvdeWgQvvlI~mL~  242 (968)
T KOG1060|consen  173 LDPE-----QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI-----HKNYRKLCRLLPDVDEWGQVVLINMLT  242 (968)
T ss_pred             CChh-----hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh-----hHHHHHHHhhccchhhhhHHHHHHHHH
Confidence            6522     223677778888999999999999999998886543322     233556666665443333333333333

>KOG1077|consensus

Probab=97.76  E-value=0.018  Score=57.76  Aligned_cols=304  Identities=13%  Similarity=0.110  Sum_probs=177.0

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..+..+-+++|+|+-.....-+-..+.-++..+. ...+.     ++..+..-|.+.++..+..|+.+++|+.+  -+.+
T Consensus        73 dFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~-dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~--re~~  144 (938)
T KOG1077|consen   73 DFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENS-DLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGS--REMA  144 (938)
T ss_pred             ccchHHHHHHhhcCCccHHHHhHHHHHHHHhcch-HHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHH
Confidence            4567778888887765555555555544432221 21222     34556666677889999999999999965  3444


Q ss_pred             HHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      +.+.     +-+-++|-+++  .-++..|+-+|..|-..+|+.   +-..+....++.+|.+.+ ..+...++..+..|+
T Consensus       145 ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~~lv  215 (938)
T KOG1077|consen  145 EAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQH-MGVVTAATSLIEALV  215 (938)
T ss_pred             HHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccc-cceeeehHHHHHHHH
Confidence            4443     22336666655  678889999999998776643   333456788899998776 777777888888888


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhh-------------cCCCHHHHHHHHHHHHHhccCChhh-HHHHHhcCChHHHHHhcc
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLI-------------HTTDVETLSDICWALSYISDGHNDK-IQAVVDTGVVPRLVELLD  296 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll-------------~~~d~~i~~~a~~~L~~l~~~~~~~-~~~l~~~g~~~~Lv~lL~  296 (440)
                      ...++.. .......+..|..+.             .-+.|.+...++++|.++-...+.. ...+  ..+++.++...+
T Consensus       216 k~~p~~y-k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~  292 (938)
T KOG1077|consen  216 KKNPESY-KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQ  292 (938)
T ss_pred             HcCCHHH-hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccc
Confidence            6652221 111222222222222             1135678888888888774322211 1111  123444444443


Q ss_pred             CC----C---hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhc
Q psy9169         297 SE----E---TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE  369 (440)
Q Consensus       297 ~~----~---~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~  369 (440)
                      .+    +   ...+...++-.-+++..-+..-+.+.  ..+..|.+++.+.+.++|.-|.-.++.++.....+ +     
T Consensus       293 ~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-d-----  364 (938)
T KOG1077|consen  293 EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI-D-----  364 (938)
T ss_pred             cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccchH-H-----
Confidence            21    1   12334445545555554443333333  35788899999999999999999999988753221 1     


Q ss_pred             CcchHHHHHHHHcCcHHHHHHHhc-CCcHHHHHHHHHHHHhhCCCC
Q psy9169         370 GELNQMALLVEESGGLEKLEALQH-HENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       370 ~~~~~~~~~l~~~g~l~~l~~L~~-~~~~~v~~~a~~il~~~~~~~  414 (440)
                              .+...  .+.|...+. .++-.|+++|..+|..+.+.+
T Consensus       365 --------avK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~  400 (938)
T KOG1077|consen  365 --------AVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS  400 (938)
T ss_pred             --------HHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence                    11111  233333333 556666666666666665443

>KOG1789|consensus

Probab=97.73  E-value=0.0072  Score=62.99  Aligned_cols=260  Identities=14%  Similarity=0.200  Sum_probs=162.9

Q ss_pred             CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          75 TVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        75 ~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .++-+...|. ..++.+|..|+..+..+. ... +....++..|++..|+.+|++ -|..+..++.+|..+++. ++...
T Consensus      1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~-~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~-~~i~k 1847 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLAT-ANK-ECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSN-GQIGK 1847 (2235)
T ss_pred             ccHHHHHHHHHcCCchHHHHHHHHHHHHh-ccc-HHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcC-cHHHH
Confidence            3455666665 467889999999887553 333 567889999999999999954 588899999999999865 66666


Q ss_pred             HHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhCC---CchhHHHHHh----------cCChHHHHhhhCCCC-cHHH
Q psy9169         154 TVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGD---GARARDLLLG----------LGTMPQILALVQPNT-PTTF  218 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~---~~~~r~~i~~----------~g~i~~L~~ll~~~~-~~~~  218 (440)
                      .-.+.|++..+..++... ++..+.+++..++.+..+   +|..+-.++.          ...-+..+.++.... ++++
T Consensus      1848 eA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPEL 1927 (2235)
T KOG1789|consen 1848 EALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPEL 1927 (2235)
T ss_pred             HHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccc
Confidence            777788888888777654 488999999999998754   2222111110          011133333333111 1111


Q ss_pred             H------HH-----------------------------------------------------------------------
Q psy9169         219 L------RN-----------------------------------------------------------------------  221 (440)
Q Consensus       219 ~------~~-----------------------------------------------------------------------  221 (440)
                      .      ..                                                                       
T Consensus      1928 iWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek 2007 (2235)
T KOG1789|consen 1928 IWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEK 2007 (2235)
T ss_pred             ccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHH
Confidence            0      00                                                                       


Q ss_pred             -----------------HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169         222 -----------------IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD  284 (440)
Q Consensus       222 -----------------a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~  284 (440)
                                       ...++..|.+..+.-.+..---|-+|.++..+...+..+-..|+.+|..|+.+.. +...+..
T Consensus      2008 ~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~-C~~AMA~ 2086 (2235)
T KOG1789|consen 2008 VLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQF-CCDAMAQ 2086 (2235)
T ss_pred             HHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccH-HHHHHhc
Confidence                             1111111111110000001112335555555555555556788888888886544 5577777


Q ss_pred             cCChHHHHHhccCCChhHHHHHHHHHHHhhc-CChHHHHHHHHcCCHHHHHHHhcCC
Q psy9169         285 TGVVPRLVELLDSEETTILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMKKLLSSS  340 (440)
Q Consensus       285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~-~~~~~~~~l~~~g~l~~L~~ll~~~  340 (440)
                      ...+..++..|...- ....-|+.+|..+.. ..++.....+..|+++.|+.+|+..
T Consensus      2087 l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2087 LPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             cccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            788888888886543 345578888887775 3445666788899999999999864

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.71  E-value=0.005  Score=60.85  Aligned_cols=232  Identities=12%  Similarity=0.115  Sum_probs=149.6

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCC-----ChHHHHHHHHHHHHHhCCCcHHHHHHHhc
Q psy9169          84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE-----NPNTQFEATWALTNIASGTSEQTMTVINA  158 (440)
Q Consensus        84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~-----~~~i~~~a~~~L~nla~~~~~~~~~i~~~  158 (440)
                      .+.++.+..+|+++|.|++-..+ ..++.+++.|..+.+++.|+..     ++++.+...++|.-++...+..+..+++.
T Consensus        42 ~~~~~~v~~EALKCL~N~lf~s~-~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   42 ESPDPDVSREALKCLCNALFLSP-SARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             cCCChHHHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            35788999999999999986554 4567888899999999999444     78999999999999998888888766655


Q ss_pred             -CCHHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--------
Q psy9169         159 -NAIPKFLQLLSS-----------------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP--------  212 (440)
Q Consensus       159 -g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~--------  212 (440)
                       +++..++..|..                 .+......++.++.|+..+.+.... -.....++.|+.++..        
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence             777777776631                 1245567788899999865443322 1122334444444321        


Q ss_pred             CCcHHHHHHHHHHHHhhhhCC---------------CCCCCHHHHhhHHHHHHHhhcC-C---CHHHHHHHHHHHHHhcc
Q psy9169         213 NTPTTFLRNIVWAISNLCRNK---------------NPAPDFEKIKICLPLLNQLIHT-T---DVETLSDICWALSYISD  273 (440)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~---------------~~~~~~~~~~~~~~~L~~ll~~-~---d~~i~~~a~~~L~~l~~  273 (440)
                      ........+++.+|.|+-...               ...........++..|-.-+.. .   -.+.....+.+|..++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence            122567788888888773110               0011222223333333333322 1   23678888999999988


Q ss_pred             CChhhHHHHH----------------hcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC
Q psy9169         274 GHNDKIQAVV----------------DTGVVPRLVELLDSEETTILTAALRTVGNIATGN  317 (440)
Q Consensus       274 ~~~~~~~~l~----------------~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~  317 (440)
                      .+....+.+.                ...+-.+|++++.++.+.++..+...+..||..+
T Consensus       280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d  339 (446)
T PF10165_consen  280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED  339 (446)
T ss_pred             hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence            7654433332                1245566777777777777777777777776544

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.71  E-value=0.0001  Score=46.22  Aligned_cols=39  Identities=33%  Similarity=0.674  Sum_probs=35.8

Q ss_pred             cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy9169         149 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA  187 (440)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  187 (440)
                      ++.+..+++.|+++.|+.+|.+++++++..++|+|+||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346778899999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2734|consensus

Probab=97.70  E-value=0.0081  Score=56.89  Aligned_cols=241  Identities=11%  Similarity=0.107  Sum_probs=170.6

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC----CCC----cHHHHHHhCCHHHHHHhccCCCh------HHHHHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKE----RHP----PIDELIEAGVVPICVELLDDENP------NTQFEAT  138 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~----~~~----~~~~ii~~g~i~~Lv~lL~~~~~------~i~~~a~  138 (440)
                      ..+++.++.+|.+.+.++-...+..+..+...+    ...    -++.+++.++++.|++-+..-+.      .-.+.++
T Consensus       124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L  203 (536)
T KOG2734|consen  124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL  203 (536)
T ss_pred             hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence            357888999999999999998888888775321    111    25677788999999998843232      2346678


Q ss_pred             HHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC-----
Q psy9169         139 WALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-----  211 (440)
Q Consensus       139 ~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~-----  211 (440)
                      .++-|+..-.++....+++.|.+..|+.-+..  +...-...|..+|.-+..++.+.+.......++..+++-+.     
T Consensus       204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~  283 (536)
T KOG2734|consen  204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH  283 (536)
T ss_pred             HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence            88999998888989999999988888875543  33455667888888888887777777778889999988875     


Q ss_pred             C---CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh--hhHHHHHhcC
Q psy9169         212 P---NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN--DKIQAVVDTG  286 (440)
Q Consensus       212 ~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~--~~~~~l~~~g  286 (440)
                      .   .+..++..+...+|+.+...+ .........+.++...-+++. ....+..++.+|-+...+++  +....+++.+
T Consensus       284 dP~~~~E~EmmeNLFdcLCs~lm~~-~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  284 DPATVDEEEMMENLFDCLCSLLMAP-ANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhcCh-hhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            1   223577888888888777776 334444555666665555555 55677888999999887776  5567777877


Q ss_pred             ChHHHHHhcc-CCC---------hhHHHHHHHHHHHhhc
Q psy9169         287 VVPRLVELLD-SEE---------TTILTAALRTVGNIAT  315 (440)
Q Consensus       287 ~~~~Lv~lL~-~~~---------~~v~~~al~~L~nl~~  315 (440)
                      ++..+..+.. .+.         ..+-+..+..|+.+..
T Consensus       362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            7777766653 221         2344555555555543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.67  E-value=0.0003  Score=53.42  Aligned_cols=67  Identities=15%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q psy9169         133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLG  199 (440)
Q Consensus       133 i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~  199 (440)
                      ++...+.+|+|++..++.....+.+.|++|.++....-  .+|-+++.|+|+|.|++.++++.+..+..
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            45678899999999999999999999999999998764  45999999999999999999998777654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0567|consensus

Probab=97.66  E-value=0.018  Score=51.11  Aligned_cols=252  Identities=16%  Similarity=0.210  Sum_probs=135.8

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          76 VPEMIEGMKS--SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        76 i~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      +..+.+.|..  ....-++.|+..++++....            .+..+.+...+++..++.+.+.+|+....       
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s~llkhe~ay~LgQ~~~-------   65 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDSALLKHELAYVLGQMQD-------   65 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccchhhhccchhhhhhhhcc-------
Confidence            3444444443  23345666677776654211            14444444434444555666666666543       


Q ss_pred             HHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         154 TVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                          ..+++.|+..|.+.+  +-||-.|..+|+.+. + +         ..++.+-++.++.. ..+...+..++..+-.
T Consensus        66 ----~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~---------~~~~~l~k~~~dp~-~~v~ETc~lAi~rle~  129 (289)
T KOG0567|consen   66 ----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P---------ESLEILTKYIKDPC-KEVRETCELAIKRLEW  129 (289)
T ss_pred             ----chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h---------hhHHHHHHHhcCCc-cccchHHHHHHHHHHH
Confidence                245666666666544  556666777776665 2 1         12344444442222 3344444444443332


Q ss_pred             CC--------------CCCCCHHHHhhHHHHHHHhh-cCCCHHHH-HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169         232 NK--------------NPAPDFEKIKICLPLLNQLI-HTTDVETL-SDICWALSYISDGHNDKIQAVVDTGVVPRLVELL  295 (440)
Q Consensus       232 ~~--------------~~~~~~~~~~~~~~~L~~ll-~~~d~~i~-~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL  295 (440)
                      ..              +|.+.  ....-+..+...| ..+.+-.. ..+...|.++-  .++         .+..|++-+
T Consensus       130 ~~~~~~~~~~~p~~SvdPa~p--~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g--~Ee---------aI~al~~~l  196 (289)
T KOG0567|consen  130 KDIIDKIANSSPYISVDPAPP--ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG--TEE---------AINALIDGL  196 (289)
T ss_pred             hhccccccccCccccCCCCCc--cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC--cHH---------HHHHHHHhc
Confidence            11              11111  1112233333333 32322222 23333333332  122         255677777


Q ss_pred             cCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC--CChhHHHHHHHHHHHHhcCChHHHHHHhhcCcch
Q psy9169         296 DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS--SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN  373 (440)
Q Consensus       296 ~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~--~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~  373 (440)
                      ..++.-.+..+..++|.+-+.           -.++.|.+.|..  .++-+|.+|+.+|+.|+.  ++            
T Consensus       197 ~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~------------  251 (289)
T KOG0567|consen  197 ADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED------------  251 (289)
T ss_pred             ccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH------------
Confidence            778888999999999987432           246777777764  367899999999999964  22            


Q ss_pred             HHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169         374 QMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA  410 (440)
Q Consensus       374 ~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  410 (440)
                                +++.|..+...+.+-|++-+.-.++.+
T Consensus       252 ----------~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  252 ----------CVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             ----------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence                      255567777777777777777777655

>KOG0567|consensus

Probab=97.63  E-value=0.005  Score=54.46  Aligned_cols=225  Identities=14%  Similarity=0.237  Sum_probs=144.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      +..+.+...+++....-+.+.++..+            -....+|.|+..|  .+..|-+|.+|..+|+++..  +    
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~------------~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--~----   99 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQM------------QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P----   99 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhh------------ccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--h----
Confidence            44444444444334444555555433            2235799999988  66778999999999999872  2    


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH-------HHH-----HhcCChHHHHhhhCCCCcHHH-HH
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR-------DLL-----LGLGTMPQILALVQPNTPTTF-LR  220 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r-------~~i-----~~~g~i~~L~~ll~~~~~~~~-~~  220 (440)
                           +.++.+-++.+++...|++.+..++..+-..+....       ..+     ...+-+..|-..|...+.+.+ +.
T Consensus       100 -----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry  174 (289)
T KOG0567|consen  100 -----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY  174 (289)
T ss_pred             -----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence                 567888888888888899988888877642110000       000     111223333333333221222 33


Q ss_pred             HHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--C
Q psy9169         221 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--E  298 (440)
Q Consensus       221 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~  298 (440)
                      .+.+.|.|+..           ...+..|.+-+..++.-.+..+..+++.|-...           .+|.|.+.|..  .
T Consensus       175 ~amF~LRn~g~-----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E  232 (289)
T KOG0567|consen  175 RAMFYLRNIGT-----------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETE  232 (289)
T ss_pred             hhhhHhhccCc-----------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhc
Confidence            44444444432           235667777788888889999999998886432           37788887754  4


Q ss_pred             ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      .+-|+..|+.+||.|+.  +         ..++.|...+..+.+-+++.+..+|..+-
T Consensus       233 ~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  233 HPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             chHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            57899999999998753  2         24677888888888888888888887664

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.014  Score=60.19  Aligned_cols=169  Identities=15%  Similarity=0.123  Sum_probs=130.2

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHH
Q psy9169          83 MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIP  162 (440)
Q Consensus        83 L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~  162 (440)
                      +.|++...+..|++.+....+...+  .     .-..|-+++.+.+.|.+++.-.-.-|.+++...|+..  +   -+++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~d--m-----ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l---LavN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGED--M-----SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L---LAVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCC--h-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H---HHHH
Confidence            6677888888888766555444331  1     1246777777778899999999999999998877432  2   2578


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHH
Q psy9169         163 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI  242 (440)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  242 (440)
                      .+.+=++++++.+|-.|+.+++.+-..       -+...+++++.+++.+.. ..+++.|+.|+.++.+-+   ++....
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~-ayVRk~Aalav~kly~ld---~~l~~~  164 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPH-AYVRKTAALAVAKLYRLD---KDLYHE  164 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHHHhcC---Hhhhhc
Confidence            889999999999999999999876422       222346888889988887 899999999999999765   233344


Q ss_pred             hhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169         243 KICLPLLNQLIHTTDVETLSDICWALSYISDG  274 (440)
Q Consensus       243 ~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~  274 (440)
                      .|.+..+..++.++||.+...|+.++..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            56777888888999999999999999888755

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.62  E-value=0.00043  Score=52.53  Aligned_cols=63  Identities=21%  Similarity=0.283  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhcCChHHHH
Q psy9169         302 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQID  364 (440)
Q Consensus       302 v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~  364 (440)
                      ++...+++|+|++..++...+.+.+.|+++.+++...  ..+|-+++.|.|++.|++.++++.-+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~   66 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE   66 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence            4667889999999999999999999999999998765  34689999999999999999887533

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1058|consensus

Probab=97.47  E-value=0.0096  Score=59.98  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc-H-HHHHH------hCCHHH----HHHh------------------
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP-I-DELIE------AGVVPI----CVEL------------------  125 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~-~~ii~------~g~i~~----Lv~l------------------  125 (440)
                      -..+.+.|.+++.+.+..|+..+..++.....-+ . -.+++      ..-+..    ..++                  
T Consensus        22 ~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvc  101 (948)
T KOG1058|consen   22 EDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVC  101 (948)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHH
Confidence            3467778888888888888877666655433221 1 11111      011111    1122                  


Q ss_pred             ------ccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC
Q psy9169         126 ------LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD  189 (440)
Q Consensus       126 ------L~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~  189 (440)
                            |+++|.-+|-..++.|+.+-.  ++..     ...+|.+...|.+.+..||.+|+.+++.|-..
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~  164 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKN  164 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence                  234455566666666665532  2221     25678889999999999999999999888744

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.37  E-value=0.02  Score=56.09  Aligned_cols=260  Identities=14%  Similarity=0.122  Sum_probs=137.5

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH------
Q psy9169          79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT------  152 (440)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~------  152 (440)
                      |-..|++.-..+++++++.+..+....-   ...+++ ..+..|-.+|.++....|+.|+++|..|+...|+..      
T Consensus       269 L~~wls~k~emV~lE~Ar~v~~~~~~nv---~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~e  344 (898)
T COG5240         269 LNSWLSDKFEMVFLEAARAVCALSEENV---GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKE  344 (898)
T ss_pred             HHHHhcCcchhhhHHHHHHHHHHHHhcc---CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChh
Confidence            3334455668899999999987654331   122222 257778888899999999999999999997655321      


Q ss_pred             -HHHH-hcC---CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHH-------------hcCChHHHHhhhCCC
Q psy9169         153 -MTVI-NAN---AIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLL-------------GLGTMPQILALVQPN  213 (440)
Q Consensus       153 -~~i~-~~g---~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~-------------~~g~i~~L~~ll~~~  213 (440)
                       +.++ +.+   ..-.+..+|+.++.+-....+..+-++..|- ..++..++             ....+.-|...|.+.
T Consensus       345 vEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e  424 (898)
T COG5240         345 VESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE  424 (898)
T ss_pred             HHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence             1111 111   1223444555544333333333333332111 11110000             001233333333333


Q ss_pred             CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH
Q psy9169         214 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT-DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV  292 (440)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv  292 (440)
                      ..-++.+.+..+++.+.... |.    ....++..|..++.+. -+++....+..|+.=....++-.      ..+.++.
T Consensus       425 Gg~eFK~~~Vdaisd~~~~~-p~----skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~------~yvrhIy  493 (898)
T COG5240         425 GGLEFKKYMVDAISDAMEND-PD----SKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPG------KYVRHIY  493 (898)
T ss_pred             ccchHHHHHHHHHHHHHhhC-ch----HHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcc------hHHHHHH
Confidence            33566666666666655554 21    1233455555555432 34455444444443321111100      0122222


Q ss_pred             HhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         293 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       293 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      .-+--.+.-++..|+.||+.++..-...   +....+...|.+++.+.+..+|..|.+.|.|+-
T Consensus       494 NR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         494 NRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            2222244568899999998877543211   111234567888999999999999999999985

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.33  E-value=0.11  Score=51.16  Aligned_cols=99  Identities=12%  Similarity=0.150  Sum_probs=47.0

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE  240 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  240 (440)
                      .|.|-..|++.-+.+.-.++.++..++..+-.  ...+ ...+..|-.+|.... ...+-.|+.+|..|+... |..   
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~-P~k---  337 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKY-PQK---  337 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhC-Cce---
Confidence            34555555554455666666666665533211  1111 113444444554444 566667777777777654 221   


Q ss_pred             HHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q psy9169         241 KIKICLPLLNQLIHTTDVETLSDICWAL  268 (440)
Q Consensus       241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L  268 (440)
                       +.-+-+.+-.++.+.+..+...|+.+|
T Consensus       338 -v~vcN~evEsLIsd~Nr~IstyAITtL  364 (898)
T COG5240         338 -VSVCNKEVESLISDENRTISTYAITTL  364 (898)
T ss_pred             -eeecChhHHHHhhcccccchHHHHHHH
Confidence             111223333444455544444444443

>KOG0211|consensus

Probab=97.31  E-value=0.029  Score=58.26  Aligned_cols=247  Identities=17%  Similarity=0.120  Sum_probs=137.7

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF  239 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  239 (440)
                      ++....+++....+.+..++.-...++.. +..++..+....++|.+-.++.+.. ..+....+..+..+..-.   +..
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~---~k~  432 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGLSPIL---PKE  432 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhccccccCccC---CcC
Confidence            44444555444444444443333333311 1111122223334455544444333 444444444433333221   122


Q ss_pred             HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH
Q psy9169         240 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH  319 (440)
Q Consensus       240 ~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~  319 (440)
                      .......|.+...++..++.++.+..+.+..+-...+..--..+....+|.++.+-......++.+.++.+-.++.... 
T Consensus       433 ~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-  511 (759)
T KOG0211|consen  433 RTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-  511 (759)
T ss_pred             cCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-
Confidence            2345678888888999999999999988876655444333344555678888888777778888888888887765332 


Q ss_pred             HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc--CChHHHHHHhh-----cCc---------chHHHHHHH---
Q psy9169         320 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA--GNSRQIDHVIQ-----EGE---------LNQMALLVE---  380 (440)
Q Consensus       320 ~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~--~~~~~~~~~i~-----~~~---------~~~~~~~l~---  380 (440)
                        ..+.+...-+.+...+.+....+++.|+..+.-++.  |..-+++.++.     .++         ...+..+.+   
T Consensus       512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g  589 (759)
T KOG0211|consen  512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLG  589 (759)
T ss_pred             --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhc
Confidence              123333334444444555567788888888887774  32222222222     111         111111111   


Q ss_pred             ----HcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169         381 ----ESGGLEKLEALQHHENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       381 ----~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~  414 (440)
                          ....++.+..+..++.++|+-.+.+.+.++...-
T Consensus       590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L  627 (759)
T KOG0211|consen  590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL  627 (759)
T ss_pred             cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence                1224677778888999999999999888876543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.30  E-value=0.0051  Score=57.95  Aligned_cols=202  Identities=12%  Similarity=0.136  Sum_probs=138.5

Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-----HHHHHhc--CChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-----RDLLLGL--GTMPQILALVQPNTPTTFLRNIVWA  225 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----r~~i~~~--g~i~~L~~ll~~~~~~~~~~~a~~~  225 (440)
                      ..+...+.+..|+..|..-+-+.+..+..+++++.......     .+.+...  .++..|+..-.+   +++.-.+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~---~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN---PDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS---TTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC---ccccchHHHH
Confidence            34556689999999999888889999999999988553332     3344322  344444444433   4455555555


Q ss_pred             HHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhccCCChhH
Q psy9169         226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLDSEETTI  302 (440)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~~~~~~v  302 (440)
                      |...++.. .........+.+-.+...+..++-++..+|..++..+-.........++..   ..+.....+|.+++.-+
T Consensus       147 lRec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  147 LRECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            66655553 222233334556667778888999999999999999776666555555554   45677888999999999


Q ss_pred             HHHHHHHHHHhhcCChH---HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         303 LTAALRTVGNIATGNDH---QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       303 ~~~al~~L~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +..++..||.|......   .+..+-+..-+..++.+|.+....++-+|..++--.+++
T Consensus       226 krqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             ehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            99999999999875443   234444555789999999999999999999999988875

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1967|consensus

Probab=97.29  E-value=0.0025  Score=65.36  Aligned_cols=193  Identities=18%  Similarity=0.198  Sum_probs=131.6

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-------------HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169         159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-------------RDLLLGLGTMPQILALVQPNTPTTFLRNIVWA  225 (440)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (440)
                      .+...|+.+|++++  +-..+..++.-+..|++..             |+.++ ..++|.|++.+...+ ...+.....+
T Consensus       815 ~ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~-~~~K~~yl~~  890 (1030)
T KOG1967|consen  815 EIAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAP-GSQKHNYLEA  890 (1030)
T ss_pred             hHHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCC-ccchhHHHHH
Confidence            34556777777643  3344555666665554332             22333 357889998888433 6677888888


Q ss_pred             HHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC---hhH
Q psy9169         226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE---TTI  302 (440)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~---~~v  302 (440)
                      |+++..+-+...-......++|.|++.|.-.|..++..+..++.-+..........-+ ..++|.++.+=.+++   ..|
T Consensus       891 LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~V  969 (1030)
T KOG1967|consen  891 LSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVV  969 (1030)
T ss_pred             HHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHH
Confidence            9988876422222223467889999999999999999999999888766554432222 345777777765554   579


Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       303 ~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      +..|+.+|+.|...-|...-.-....++..|...|+++..-+|++|..+=.+..
T Consensus       970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence            999999999998854433333334457888999999988889999988765543

>KOG0211|consensus

Probab=97.29  E-value=0.028  Score=58.43  Aligned_cols=268  Identities=12%  Similarity=0.067  Sum_probs=178.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      ++.....+.....+.+..++.-..++....+.+....+....++|.+-.+..+.++.++...+...+.++--.+.  .. 
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~-  433 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ER-  433 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--Cc-
Confidence            455666666666666666666555554433333345556666788888888888888888888777777543331  00 


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC
Q psy9169         156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP  235 (440)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~  235 (440)
                      .-....|.+...+++..+.++.+..|.+..+-...+...-.......+|.+..+-... .-.++..+.+.+..++.... 
T Consensus       434 ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~-  511 (759)
T KOG0211|consen  434 TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG-  511 (759)
T ss_pred             CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh-
Confidence            1124678888888899999999999988777655444444455556677777766554 36777778888877776542 


Q ss_pred             CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         236 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       236 ~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                        ........-+.+...+.+...+++..|...+..++.....  +. .....++.++....+++..++...+.++.-++.
T Consensus       512 --~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~  586 (759)
T KOG0211|consen  512 --VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EW-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE  586 (759)
T ss_pred             --hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--ch-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence              1122233445555556666778898888888887743331  11 112346777777766677778877777776653


Q ss_pred             --CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         316 --GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       316 --~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                        |.+     +....+++.+..+..++.+.||-.++..|--+...
T Consensus       587 v~g~e-----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  587 VLGQE-----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             HhccH-----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence              333     44446789999999999999999999999888754

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.27  E-value=0.025  Score=53.08  Aligned_cols=192  Identities=17%  Similarity=0.220  Sum_probs=120.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCC--CcHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLDDENPNTQFEATWALTNIASG--TSEQ  151 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~--~~~~  151 (440)
                      +...+..+.......|..++..+.+++...-  ..+.+.  ...++..+...++...++-+..|+.+++-++..  ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence            5667777788889999999999999987543  223222  234677777888666666666777777776543  2233


Q ss_pred             HHHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhh---CCCchhHHHHHhcCChHHH--HhhhC---------CCCc
Q psy9169         152 TMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIA---GDGARARDLLLGLGTMPQI--LALVQ---------PNTP  215 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~---~~~~~~r~~i~~~g~i~~L--~~ll~---------~~~~  215 (440)
                      ...+++ ...|.|...+.+..  ..+|..|+.+|+-++   +..+..-...  ...+..+  ....+         ..++
T Consensus       123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCc
Confidence            344443 57888999988755  567777777777765   2222211100  1122211  11122         1223


Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCH-HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169         216 TTFLRNIVWAISNLCRNKNPAPDF-EKIKICLPLLNQLIHTTDVETLSDICWALSYISD  273 (440)
Q Consensus       216 ~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~  273 (440)
                      ..+...|+.+-+-|...- +...+ ......+|.|..+|.++|.+++..|..+|.-|-.
T Consensus       200 ~~l~~aAL~aW~lLlt~~-~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTL-PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            467777766666665443 22112 3346789999999999999999999999877753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4151|consensus

Probab=97.24  E-value=0.0048  Score=62.61  Aligned_cols=209  Identities=10%  Similarity=0.008  Sum_probs=147.9

Q ss_pred             CCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169         147 GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA  225 (440)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (440)
                      ....-+...+..|+...|+.+.....+..+-.+..+|. .+.-.+...      ...++++.+.+.+.....-....+.+
T Consensus       492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~a  565 (748)
T KOG4151|consen  492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEA  565 (748)
T ss_pred             hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHH
Confidence            33444557788999999999999988888888888887 333221111      23566777776655433445567788


Q ss_pred             HHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhccCCChhHHH
Q psy9169         226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILT  304 (440)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~-~g~~~~Lv~lL~~~~~~v~~  304 (440)
                      +.||+...+...+.......++.+-.++..+++..+..++..+.||.-++.-....+.+ ..-++....++.........
T Consensus       566 ltnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l  645 (748)
T KOG4151|consen  566 LTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL  645 (748)
T ss_pred             hhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence            99988776544444444555666677778889999999999999999887766666666 34566666666666666777


Q ss_pred             HHHHHHHHhhcCChHHHH-HHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169         305 AALRTVGNIATGNDHQTD-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       305 ~al~~L~nl~~~~~~~~~-~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                      +++.++..|.+....... ..--......+..++.++++.++......++|+.....+
T Consensus       646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~e  703 (748)
T KOG4151|consen  646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFE  703 (748)
T ss_pred             hccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHH
Confidence            777777767665555444 333345788899999999999999999999996654443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.21  E-value=0.033  Score=52.56  Aligned_cols=205  Identities=11%  Similarity=0.105  Sum_probs=141.3

Q ss_pred             HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC---HHHHh----hHHHHHHHhhcCCCHHHHHHHHHH
Q psy9169         195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD---FEKIK----ICLPLLNQLIHTTDVETLSDICWA  267 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~---~~~~~----~~~~~L~~ll~~~d~~i~~~a~~~  267 (440)
                      ..+...+.+..|+..|..-+ -+.++.++....++.+.......   .....    .++..|+..-  +++++...+-..
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHH
Confidence            44556678888888887666 78999999999999987633322   22222    2333333333  345566666666


Q ss_pred             HHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcC---CHHHHHHHhcCCChhH
Q psy9169         268 LSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GLQKMKKLLSSSRVNI  344 (440)
Q Consensus       268 L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---~l~~L~~ll~~~~~~i  344 (440)
                      |..++.. +.....++....+..+.+.+..++-++...|..++..+.+.+.......+..+   ++..+..+|.++++-+
T Consensus       147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            6666654 44567888899999999999999999999999999999988887766666654   5678888999999999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         345 VKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       345 ~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                      ++.+...|+.|.......          +.+...+.+..-+..+..|+.++...|+--|..+..-|-..
T Consensus       226 krqslkLL~ellldr~n~----------~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  226 KRQSLKLLGELLLDRSNF----------NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHHHHHSGGGH----------HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             ehhhHHHHHHHHHchhHH----------HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            999999999998653321          22234444555566677778888888888887777666443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.18  E-value=0.014  Score=57.46  Aligned_cols=204  Identities=20%  Similarity=0.274  Sum_probs=125.1

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHH----HHHHHHHhCCCc
Q psy9169          76 VPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEA----TWALTNIASGTS  149 (440)
Q Consensus        76 i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a----~~~L~nla~~~~  149 (440)
                      +..++.... +.++..+..+++.+.-++.+-...  + .. ..++..+...+ ....+..+..+    +|+...+.....
T Consensus       191 l~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~--~-~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  191 LQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD--D-DL-DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh--h-hH-HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            344455443 556788888888888776542211  1 11 12233333333 23333344333    444444433222


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-------------HHHHHhcCChHHHHhhhCCCCcH
Q psy9169         150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-------------RDLLLGLGTMPQILALVQPNTPT  216 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-------------r~~i~~~g~i~~L~~ll~~~~~~  216 (440)
                      ..     ....+..|+.+|.+  +++...++.+++-+..+.+.+             |+.++ ..++|.|++..+..+ .
T Consensus       267 ~~-----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~-~  337 (415)
T PF12460_consen  267 PL-----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEAD-D  337 (415)
T ss_pred             ch-----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcC-h
Confidence            21     12346678888877  567788888888888773322             22332 236777777777666 4


Q ss_pred             HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169         217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE  293 (440)
Q Consensus       217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~  293 (440)
                      +.+.+...+|+++..+-+...-......++|.+++.|..+|.+++..++.++..+....++.+..-+ ..+++.|++
T Consensus       338 ~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~  413 (415)
T PF12460_consen  338 EIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLK  413 (415)
T ss_pred             hhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHh
Confidence            4788889999999987632223334578999999999999999999999999999988765543322 144555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.11  E-value=0.023  Score=48.77  Aligned_cols=93  Identities=15%  Similarity=0.194  Sum_probs=72.8

Q ss_pred             ChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh-HHHHh
Q psy9169         130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM-PQILA  208 (440)
Q Consensus       130 ~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i-~~L~~  208 (440)
                      +|.+|..++-+++-++...+...+     ..++.+...|.++++.||.+|+.+|..|...+     .+.-.|-+ ..++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~~l~   70 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED-----MIKVKGQLFSRILK   70 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHHHHH
Confidence            578999999999999876554333     45889999999999999999999999998552     22223333 67777


Q ss_pred             hhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         209 LVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       209 ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      ++.+.+ ++++..|..++..+....
T Consensus        71 ~l~D~~-~~Ir~~A~~~~~e~~~~~   94 (178)
T PF12717_consen   71 LLVDEN-PEIRSLARSFFSELLKKR   94 (178)
T ss_pred             HHcCCC-HHHHHHHHHHHHHHHHhc
Confidence            775555 899999999999999774

>KOG1248|consensus

Probab=97.09  E-value=0.14  Score=54.75  Aligned_cols=238  Identities=11%  Similarity=0.070  Sum_probs=146.6

Q ss_pred             cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhc---CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q psy9169         127 DDENPNTQFEATWALTNIASGTSEQTMTVINA---NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM  203 (440)
Q Consensus       127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~---g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i  203 (440)
                      ++.++.+|..+-.+|..++.. +.. ......   .+...|..-+++.....+...+.+|..|....+..-..++...+.
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~  741 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIP  741 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            566889999999999999876 221 111111   233444555555555667777777777764433222233333333


Q ss_pred             HHHHhhhCCCCcHHHHHHHHHHHHhhh--hC---CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhh
Q psy9169         204 PQILALVQPNTPTTFLRNIVWAISNLC--RN---KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK  278 (440)
Q Consensus       204 ~~L~~ll~~~~~~~~~~~a~~~L~~l~--~~---~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~  278 (440)
                      +.++.+ +.. +...++++..+|..++  ..   ....+....+..+++.|...+-.+........+-++..+.....+.
T Consensus       742 EvIL~~-Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~  819 (1176)
T KOG1248|consen  742 EVILSL-KEV-NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI  819 (1176)
T ss_pred             HHHHhc-ccc-cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence            444444 444 4788899988888888  21   1111234566777777777665554444444355555555433322


Q ss_pred             HHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc-
Q psy9169         279 IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA-  357 (440)
Q Consensus       279 ~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~-  357 (440)
                      ...-.=.+++..+..+|.+.+++++..|+.++..++...++..-.-...-+++.+..+++.....++..+-..|-.++. 
T Consensus       820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk  899 (1176)
T KOG1248|consen  820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK  899 (1176)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            2222223556777777889999999999999999999877643322223477888888777777888888877777775 


Q ss_pred             CChHHHHHHhh
Q psy9169         358 GNSRQIDHVIQ  368 (440)
Q Consensus       358 ~~~~~~~~~i~  368 (440)
                      ...+.++.++.
T Consensus       900 fg~~eLe~~~p  910 (1176)
T KOG1248|consen  900 FGAEELESFLP  910 (1176)
T ss_pred             hCHHHHHhhCH
Confidence            34555555554

>KOG2274|consensus

Probab=97.08  E-value=0.13  Score=53.18  Aligned_cols=237  Identities=12%  Similarity=0.028  Sum_probs=153.1

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHH
Q psy9169          84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIP  162 (440)
Q Consensus        84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~  162 (440)
                      .+..|.....+.+.+.+..+...  ....+. .-.+...+..+ .+..+-++..|+.+++..+.-  ... .-...+++.
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~--~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl-~~~~p~ild  533 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTV--INPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVL-LSLQPMILD  533 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhc--cchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eec-cccchHHHH
Confidence            35667777788888876644321  111111 11344445555 566677888888888888732  111 112347888


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC-CCCcHHHHHHHHHHHHhhhhCCCCCCCHHH
Q psy9169         163 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEK  241 (440)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  241 (440)
                      .|.++....+.++....+.+|+..+..+|+. ....+..+.|.+..+.. ..+++.+...+--++-.++......  ...
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~--g~m  610 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY--GPM  610 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh--cch
Confidence            8999988888899999999999999887776 33445667777777654 3444666666667777777643211  123


Q ss_pred             HhhHHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHHHHHHHHHHHhhcC
Q psy9169         242 IKICLPLLNQLIHTTD----VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATG  316 (440)
Q Consensus       242 ~~~~~~~L~~ll~~~d----~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~~~al~~L~nl~~~  316 (440)
                      ...++|.++..+..++    .....-++..|..+.++.+.-....+-.-++|++.++.-| ++......+..||..+...
T Consensus       611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            4678999999998765    5666667777776665544333333444568888888644 4567788888898888887


Q ss_pred             ChHHHHHHHHcCC
Q psy9169         317 NDHQTDCVIQAGG  329 (440)
Q Consensus       317 ~~~~~~~l~~~g~  329 (440)
                      +.++...--+.++
T Consensus       691 ~~eq~~t~~~e~g  703 (1005)
T KOG2274|consen  691 TLEQLLTWHDEPG  703 (1005)
T ss_pred             CHHHHHhhccCCC
Confidence            7666554444333

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.07  E-value=0.00085  Score=52.34  Aligned_cols=72  Identities=17%  Similarity=0.347  Sum_probs=61.8

Q ss_pred             CChHHHHHhc-cCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         286 GVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       286 g~~~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      .++..|+++| .+.++.+..-||.=||.++...|..+..+-+.|+-..++.+|.+++++|+++|..|+.-+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3578899999 44567788889999999999999999888889999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1943|consensus

Probab=97.06  E-value=0.58  Score=49.70  Aligned_cols=229  Identities=15%  Similarity=0.161  Sum_probs=135.7

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .++.|.+.|++.|..++-.|++.+.++.++.+.    .++ ..++...++++ ..+++..=.-++.+|+.+|...--.-.
T Consensus       342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            455666777888999999999999999876651    222 22455666666 334455666888999998853111111


Q ss_pred             HHHhcCCHHHHHHhhCCCC--------HHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHH
Q psy9169         154 TVINANAIPKFLQLLSSPH--------LNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVW  224 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~--------~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~  224 (440)
                      .+  ..++|.+++-|.-++        ..||+.|+.+++.++.. ++..-+.++. .....|+-.---+....+++.|..
T Consensus       417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevncRRAAsA  493 (1133)
T KOG1943|consen  417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNCRRAASA  493 (1133)
T ss_pred             HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhHhHHHHH
Confidence            11  145666666554322        56899999988888843 2322122211 122222222122333678888888


Q ss_pred             HHHhhh-hCCCCCCCHHH-------------------------Hh----hHHHHHHHh-hcCCCHHHHHHHHHHHHHhcc
Q psy9169         225 AISNLC-RNKNPAPDFEK-------------------------IK----ICLPLLNQL-IHTTDVETLSDICWALSYISD  273 (440)
Q Consensus       225 ~L~~l~-~~~~~~~~~~~-------------------------~~----~~~~~L~~l-l~~~d~~i~~~a~~~L~~l~~  273 (440)
                      ++-... +..+.+.-+..                         ..    .++..++.. +.|=|..++..+.++|..|+.
T Consensus       494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~  573 (1133)
T KOG1943|consen  494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL  573 (1133)
T ss_pred             HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            776444 42322110000                         01    112222222 345588999999999999997


Q ss_pred             CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      ..++.    ...+.+++++....+.+...+.-+..+.|.++.
T Consensus       574 ~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  574 TEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             hhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            66643    446788999988888887777766666666654

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.05  E-value=0.094  Score=44.96  Aligned_cols=92  Identities=20%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169         216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL  295 (440)
Q Consensus       216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL  295 (440)
                      +.++.+++-+++-||..-+     ....+.+|.+...|.++++.++..|+.+|..|...+.-.    ++..++..++.++
T Consensus         2 ~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l   72 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLL   72 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHH
Confidence            6788999999999996652     245678999999999999999999999999998765433    2223358888899


Q ss_pred             cCCChhHHHHHHHHHHHhhcC
Q psy9169         296 DSEETTILTAALRTVGNIATG  316 (440)
Q Consensus       296 ~~~~~~v~~~al~~L~nl~~~  316 (440)
                      .+++++|+..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999876

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.04  E-value=0.0012  Score=51.54  Aligned_cols=73  Identities=21%  Similarity=0.265  Sum_probs=62.7

Q ss_pred             hhHHHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         243 KICLPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       243 ~~~~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      ..++..|+.+| .+.|+.++.-||.=|+.++...+.....+-+.|+-..++.+|.|++++|+..|+.|+..+..
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            45788888888 45688899999999999999888887888788999999999999999999999999998764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1991|consensus

Probab=97.02  E-value=0.094  Score=54.82  Aligned_cols=261  Identities=15%  Similarity=0.118  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHhcC-CCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhh
Q psy9169          90 MRMIATRSARKMLSK-ERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL  168 (440)
Q Consensus        90 ~~~~a~~~l~~lls~-~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL  168 (440)
                      ...-|++.+..+.+. .+..+.....+.=+++.+...++++.--+|..|||+++.++.-+-  .....-..++....+.|
T Consensus       434 qkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t~~~l  511 (1010)
T KOG1991|consen  434 QKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDF--KDPNNLSEALELTHNCL  511 (1010)
T ss_pred             hhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHh
Confidence            333345554444331 122344455555566667777778888899999999999984321  22222235667777777


Q ss_pred             C-CCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHH-HhhhhCCCCCCCHHHHhh
Q psy9169         169 S-SPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAI-SNLCRNKNPAPDFEKIKI  244 (440)
Q Consensus       169 ~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~  244 (440)
                      . +.+..|+..|+.+|..+..+.+.....+.  -.+.++.|+.+.+.-. .+.+..++..+ ...+..- .+........
T Consensus       512 ~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E-nd~Lt~vme~iV~~fseEl-sPfA~eL~q~  589 (1010)
T KOG1991|consen  512 LNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE-NDDLTNVMEKIVCKFSEEL-SPFAVELCQN  589 (1010)
T ss_pred             ccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHhh-chhHHHHHHH
Confidence            7 66678999999999999877654433232  1244555666665444 23333333332 2222222 1122223355


Q ss_pred             HHHHHHHhhcC---C---CHHHHHHHHHHHHH---hcc---CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         245 CLPLLNQLIHT---T---DVETLSDICWALSY---ISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       245 ~~~~L~~ll~~---~---d~~i~~~a~~~L~~---l~~---~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                      +.....+++..   .   +.+=...|.++|..   |..   ..++... -++.-++|.+-..|++.-.++-..++..+.+
T Consensus       590 La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~  668 (1010)
T KOG1991|consen  590 LAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIVSS  668 (1010)
T ss_pred             HHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence            56666666653   1   11222233333322   221   1221111 1233456666666777777888888888888


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      +....++-.-.++  |+++.+.+++....-..-.+..-+|.|+..
T Consensus       669 ~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt  711 (1010)
T KOG1991|consen  669 LTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVT  711 (1010)
T ss_pred             hhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence            7765544333444  578888888888777778888889998774

>KOG0915|consensus

Probab=97.01  E-value=0.0089  Score=64.66  Aligned_cols=266  Identities=13%  Similarity=0.116  Sum_probs=156.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCC-CcHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG-TSEQTMT  154 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~-~~~~~~~  154 (440)
                      ...+...+.|+++..|..++..+..+...-...+-.......+...|.++|.+.+.-+|..|..-|+-+-.- +...+  
T Consensus       820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k--  897 (1702)
T KOG0915|consen  820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK--  897 (1702)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH--
Confidence            455667777999988887765554454332212222333345668999999888888999888888766432 22222  


Q ss_pred             HHhcCCHHHHHHhhCCCC---------HHHHH-------------HHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC
Q psy9169         155 VINANAIPKFLQLLSSPH---------LNLAE-------------QATWALGNIAGDGARARDLLLGLGTMPQILALVQP  212 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~---------~~v~~-------------~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~  212 (440)
                         .+.+..|+.-|..+.         .++.+             ....=|+|+|.+-.       +...+-.++++-++
T Consensus       898 ---~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh  967 (1702)
T KOG0915|consen  898 ---KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANH  967 (1702)
T ss_pred             ---HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhh
Confidence               244555555553221         11111             11112333332210       11123334444443


Q ss_pred             CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH
Q psy9169         213 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV  292 (440)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv  292 (440)
                      +-.=.-+.-|+.-+..++... ..........++|.|...=.+++..++.+...+-.-|...+...+.... ..++.-|+
T Consensus       968 ~A~wnSk~GaAfGf~~i~~~a-~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eLL 1045 (1702)
T KOG0915|consen  968 NATWNSKKGAAFGFGAIAKQA-GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDELL 1045 (1702)
T ss_pred             hchhhcccchhhchHHHHHHH-HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHHH
Confidence            322222344555566666543 1122334567788888888889988888877777777766555444433 36788888


Q ss_pred             HhccCCChhHHHHHHHHHHHhhcCChHH--HHHHHHcCCHHHHHHHhcCCChhHHHH---HHHHHHHHhc
Q psy9169         293 ELLDSEETTILTAALRTVGNIATGNDHQ--TDCVIQAGGLQKMKKLLSSSRVNIVKE---AAWTISNITA  357 (440)
Q Consensus       293 ~lL~~~~~~v~~~al~~L~nl~~~~~~~--~~~l~~~g~l~~L~~ll~~~~~~i~~~---a~~~L~nl~~  357 (440)
                      .-|.+....||+.+|.+|..|..|.+..  .+.+-  .+-..+.+.+++-.+.+|+.   ++.+|+.++.
T Consensus      1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred             HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8899999999999999999999987632  22222  23445556666656667765   5666776663

>KOG0414|consensus

Probab=97.01  E-value=0.012  Score=62.34  Aligned_cols=137  Identities=13%  Similarity=0.147  Sum_probs=107.9

Q ss_pred             HHHhhHHHHHHHhhc----CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhh
Q psy9169         240 EKIKICLPLLNQLIH----TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIA  314 (440)
Q Consensus       240 ~~~~~~~~~L~~ll~----~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~  314 (440)
                      .....+.|.+++..+    .+||+++.+|.-+|+.++.-+.+...     .-+|.|+..|. ++++.++.+++-++|-++
T Consensus       915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchh
Confidence            445678888888884    46899999999999999977664432     23899999996 889999999999999999


Q ss_pred             cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC
Q psy9169         315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH  394 (440)
Q Consensus       315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~  394 (440)
                      ...+...+.     .-+.|...|.+.++.+|+.|..+|+++.-                  ..++.--|-+.....++..
T Consensus       990 v~fpnlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLIL------------------ndmiKVKGql~eMA~cl~D 1046 (1251)
T KOG0414|consen  990 VRFPNLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLIL------------------NDMIKVKGQLSEMALCLED 1046 (1251)
T ss_pred             hhcccccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHH------------------hhhhHhcccHHHHHHHhcC
Confidence            877755543     34668899999999999999999999974                  2344455666667777777


Q ss_pred             CcHHHHHHHH
Q psy9169         395 ENETVYQKCY  404 (440)
Q Consensus       395 ~~~~v~~~a~  404 (440)
                      ++++|+..|-
T Consensus      1047 ~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1047 PNAEISDLAK 1056 (1251)
T ss_pred             CcHHHHHHHH
Confidence            7777777777

>KOG1248|consensus

Probab=97.01  E-value=0.076  Score=56.54  Aligned_cols=222  Identities=13%  Similarity=0.112  Sum_probs=141.3

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh---CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc-HHHHHHHhcC
Q psy9169          84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEA---GVVPICVELLDDENPNTQFEATWALTNIASGTS-EQTMTVINAN  159 (440)
Q Consensus        84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~---g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~-~~~~~i~~~g  159 (440)
                      ++.+..+|..+-..|..++..   +........   .+...|..-+++.....+...+.+|..|....+ ++...+ ...
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~  739 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKL  739 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence            356889999999999988765   233443333   334445555556666778888888888776555 333333 333


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh------cCChHHHHhhhCCC---CcHHHHHHHHHHHHhhh
Q psy9169         160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG------LGTMPQILALVQPN---TPTTFLRNIVWAISNLC  230 (440)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~------~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~  230 (440)
                      +.+.++.+ +..+...+..+..+|..|+..     .....      ...+...+.++..+   +...+....+.++..+.
T Consensus       740 I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  740 IPEVILSL-KEVNVKARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HHHHHHhc-ccccHHHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            44444444 777777887777777777620     00111      12455555555432   21222222255666666


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV  310 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L  310 (440)
                      ..............++..+.-+|.++.++++..|+..+..++...++..-.-....+++.+..+++.....++..+-..+
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Ll  893 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLL  893 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            55545556667788889999999999999999999999999987775432222234688888877777777887777777


Q ss_pred             HHhhc
Q psy9169         311 GNIAT  315 (440)
Q Consensus       311 ~nl~~  315 (440)
                      -.++.
T Consensus       894 ekLir  898 (1176)
T KOG1248|consen  894 EKLIR  898 (1176)
T ss_pred             HHHHH
Confidence            77664

>KOG1078|consensus

Probab=96.97  E-value=0.054  Score=55.10  Aligned_cols=260  Identities=16%  Similarity=0.156  Sum_probs=146.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH--
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM--  153 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~--  153 (440)
                      ++.+=..+.+....++++|++.+..+-....    ..+..  .+..|--++.++.+.+|+.|.++|..+|...|....  
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~----r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNS----RELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhccccCH----hhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            4555566778899999999999987643222    22222  677777788999999999999999999976654211  


Q ss_pred             ------HHHhcC---CHHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCc-----hhHHHH-----HhcCChHHHHhhh
Q psy9169         154 ------TVINAN---AIPKFLQLLSSPH----LNLAEQATWALGNIAGDGA-----RARDLL-----LGLGTMPQILALV  210 (440)
Q Consensus       154 ------~i~~~g---~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~-----~~r~~i-----~~~g~i~~L~~ll  210 (440)
                            .+-+.+   ....+..+|+...    ..+..+....+.+|+.+..     ..+...     ...+.++-|.++|
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~L  400 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNML  400 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence                  111111   2233444444433    3455555555566553321     111111     1233455555566


Q ss_pred             CCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy9169         211 QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR  290 (440)
Q Consensus       211 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~  290 (440)
                      ++...-+..+....++..+.... +..    ....+..|...+.+.  +....+...|.-|....+...   .-..-+..
T Consensus       401 r~eGg~e~K~aivd~Ii~iie~~-pds----Ke~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~---~Pskyir~  470 (865)
T KOG1078|consen  401 REEGGFEFKRAIVDAIIDIIEEN-PDS----KERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAP---NPSKYIRF  470 (865)
T ss_pred             HhccCchHHHHHHHHHHHHHHhC-cch----hhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCC---CcchhhHH
Confidence            55444566666666666665543 111    122344444444322  122223333333332111000   00111233


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         291 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       291 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      +...+.-.+..++..|+.+|.++..+++....     .+.-.|.+.+.+.+..+|..|.+.|.++-
T Consensus       471 iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  471 IYNRVILENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            33333334667899999999999866653333     45667888888999999999999999987

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.95  E-value=0.0093  Score=45.27  Aligned_cols=93  Identities=13%  Similarity=0.101  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHc
Q psy9169         303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES  382 (440)
Q Consensus       303 ~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~  382 (440)
                      +..++.+|+.++.+-+......++ .++++++..+.++++.+|..||.+|.|++....+.+            ...+  .
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~------------l~~f--~   67 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI------------LPYF--N   67 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH------------HHHH--H
Confidence            556777777777665555554554 488999999999999999999999999986544321            1111  2


Q ss_pred             CcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         383 GGLEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       383 g~l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                      ...+.|..+...+++.|+..| .+|.+++
T Consensus        68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   68 EIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            246778889999999988777 6666554

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.91  E-value=0.053  Score=44.79  Aligned_cols=124  Identities=13%  Similarity=0.139  Sum_probs=98.1

Q ss_pred             HHHHHhcCChHHHHhhhCCCCc-----HHHHHHHHHHHHhhhhCCCCCCCHH-HHhhHHHHHHHhhcC--CCHHHHHHHH
Q psy9169         194 RDLLLGLGTMPQILALVQPNTP-----TTFLRNIVWAISNLCRNKNPAPDFE-KIKICLPLLNQLIHT--TDVETLSDIC  265 (440)
Q Consensus       194 r~~i~~~g~i~~L~~ll~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~L~~ll~~--~d~~i~~~a~  265 (440)
                      ...++..+++..|++++.++..     .++...++.++..|-.+..  .... ....++..++..++.  .|..+...++
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~--vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI--VSWDTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc--CchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence            4667889999999999997763     4778888888888887642  2222 235677777777764  3789999999


Q ss_pred             HHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH
Q psy9169         266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH  319 (440)
Q Consensus       266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~  319 (440)
                      ..|-+++.+++...+.+-+.=-++.|+.+|..+++.++..|+..+-.+....++
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            999999999888777777777799999999999999999999888877765444

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.029  Score=54.94  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=67.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-ccCCChhHHHHHHHHHHHhhcCChHHHHHHH
Q psy9169         247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQTDCVI  325 (440)
Q Consensus       247 ~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~  325 (440)
                      ..+.+++.+.|+-++.....+++.--.+..       +.|++..|+.. .++.+.+|+.+|.-+||-+|..+.       
T Consensus       519 d~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-------  584 (926)
T COG5116         519 DYINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-------  584 (926)
T ss_pred             HHHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc-------
Confidence            356677777777776665555432222211       13667777777 567788999999999999887765       


Q ss_pred             HcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCChH
Q psy9169         326 QAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       326 ~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                        ..+...+++|. +.++.+|...+.+|+-.|+|+..
T Consensus       585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~  619 (926)
T COG5116         585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD  619 (926)
T ss_pred             --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence              33455556555 45788999999999988887544

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.91  E-value=0.025  Score=50.79  Aligned_cols=105  Identities=15%  Similarity=0.189  Sum_probs=88.2

Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHH
Q psy9169         301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV  379 (440)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l  379 (440)
                      .....|++.|.-++--++..+..+-..+.+..|++++.. ..+.++..+.-+|..+...++..             ...+
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F  172 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF  172 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence            345668888988888888888888899999999999954 46789999999999988877654             6789


Q ss_pred             HHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhCCCCcccc
Q psy9169         380 EESGGLEKLEALQHHE--NETVYQKCYKIISMAFNDSAENS  418 (440)
Q Consensus       380 ~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~~~~~~~~~  418 (440)
                      |+++|+..+..+..+.  +.+++-+..+.|.-|+.+|....
T Consensus       173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~  213 (257)
T PF08045_consen  173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSI  213 (257)
T ss_pred             HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCC
Confidence            9999999999998866  68999999999999998765443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4151|consensus

Probab=96.90  E-value=0.015  Score=59.22  Aligned_cols=214  Identities=14%  Similarity=0.051  Sum_probs=147.1

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCC-hHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .+++.|..+..-+.+...+....+|.-.++......      ..+++++...++... -.-.++++.+++|+++.+...+
T Consensus       504 ~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r  577 (748)
T KOG4151|consen  504 GGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDR  577 (748)
T ss_pred             cHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhH
Confidence            567777777777777888887777763323333221      235667777663322 2334789999999999988888


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                      +.+...-.++.+-.++...++.++..++..+.||....--+...+.+ ...++.....+.. ........++.++..+..
T Consensus       578 ~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~s  656 (748)
T KOG4151|consen  578 QKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITS  656 (748)
T ss_pred             HHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhh
Confidence            88888888888888888899999999999999999774444344444 3344444444444 335556666666664554


Q ss_pred             CCCCCCC-HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh
Q psy9169         232 NKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL  294 (440)
Q Consensus       232 ~~~~~~~-~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l  294 (440)
                      ....... ..........++.++.+.+++++.-.+..+.++.....+....++....++.+..+
T Consensus       657 v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~  720 (748)
T KOG4151|consen  657 VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGL  720 (748)
T ss_pred             cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHH
Confidence            4323222 44556677888899999999999999999999777777776676666666665544

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.89  E-value=0.12  Score=49.96  Aligned_cols=192  Identities=11%  Similarity=0.111  Sum_probs=122.7

Q ss_pred             HHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH-HhhCC---CchhHHHHHhcCChHHHHhhhC
Q psy9169         136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGD---GARARDLLLGLGTMPQILALVQ  211 (440)
Q Consensus       136 ~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~---~~~~r~~i~~~g~i~~L~~ll~  211 (440)
                      .|+.+|-.+....+.....+.+.+++..++..|..+-....+.     . +...+   .+..+.....       ...+ 
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------~~~i-   69 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----NKNEEAGSGIPPEYKESSVD-------GYSI-   69 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----ccccCCCCCCCCCccccccc-------cccc-
Confidence            4666777777676777778899999999999886442221110     0 11100   0011000000       0000 


Q ss_pred             CCCcHHHHHHHHHHHHhhhh-CCCCC--CCHHHH-hhHHHHHHHhhcCC---CHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169         212 PNTPTTFLRNIVWAISNLCR-NKNPA--PDFEKI-KICLPLLNQLIHTT---DVETLSDICWALSYISDGHNDKIQAVVD  284 (440)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~-~~~~~--~~~~~~-~~~~~~L~~ll~~~---d~~i~~~a~~~L~~l~~~~~~~~~~l~~  284 (440)
                      ......+++..+..+..+.. +....  ...... ..++..|...+.+.   -+.+...|+.++..+..+.+.....+.+
T Consensus        70 ~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e  149 (379)
T PF06025_consen   70 SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQE  149 (379)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            00113455555566666555 22111  112223 45666777777664   4689999999999999999999999999


Q ss_pred             cCChHHHHHhcc-C---CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC
Q psy9169         285 TGVVPRLVELLD-S---EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR  341 (440)
Q Consensus       285 ~g~~~~Lv~lL~-~---~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~  341 (440)
                      +|+.+.+++.+. .   ++.++....-.+++.||-++. ..+.+.+.+.++.+.+++.+++
T Consensus       150 ~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  150 AGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             cCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHH
Confidence            999999999988 3   345666666678888887655 6677888999999999998764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.86  E-value=0.27  Score=51.70  Aligned_cols=200  Identities=16%  Similarity=0.211  Sum_probs=122.0

Q ss_pred             hcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---CCC----cHHHHHHHHH
Q psy9169         157 NANAIPKFLQLLSSPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNT----PTTFLRNIVW  224 (440)
Q Consensus       157 ~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~~~----~~~~~~~a~~  224 (440)
                      +.|++..++.++.+..     ..+....+..|...+.- +.+|..+++.|+++.|+..+.   ...    ...+....+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            5689999999997632     34555566666655555 888999999999999998886   221    1455555555


Q ss_pred             HHHhhhhCCCCC-C----C---HH----HHhhHHHHHHHhhcC----CCHHHHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy9169         225 AISNLCRNKNPA-P----D---FE----KIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGVV  288 (440)
Q Consensus       225 ~L~~l~~~~~~~-~----~---~~----~~~~~~~~L~~ll~~----~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~  288 (440)
                      .+-.|....+.. .    .   ..    ....-+..+++.+.+    .++.+....+.+|.+|+.++.+..+.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            555444322110 0    0   00    022335555555544    468999999999999999999888777543  2


Q ss_pred             HHHHHhccC--CChhHHHHHHHHHHHhhcCC------hHHHHHHHHcCCHHHHHHHhcCCCh--------hHH-------
Q psy9169         289 PRLVELLDS--EETTILTAALRTVGNIATGN------DHQTDCVIQAGGLQKMKKLLSSSRV--------NIV-------  345 (440)
Q Consensus       289 ~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~------~~~~~~l~~~g~l~~L~~ll~~~~~--------~i~-------  345 (440)
                      .+.+++=.-  ....--...+.+++.++.+-      ....+.+++.|++...++++...-|        ..+       
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            222222111  11111123356666666532      3567889999999988888764322        222       


Q ss_pred             -HHHHHHHHHHhcCC
Q psy9169         346 -KEAAWTISNITAGN  359 (440)
Q Consensus       346 -~~a~~~L~nl~~~~  359 (440)
                       +.+...|.-++.|.
T Consensus       352 Lp~iL~lL~GLa~gh  366 (802)
T PF13764_consen  352 LPYILRLLRGLARGH  366 (802)
T ss_pred             HHHHHHHHHHHHhcC
Confidence             33666667777653

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.77  E-value=0.11  Score=46.53  Aligned_cols=188  Identities=18%  Similarity=0.216  Sum_probs=122.2

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHH-H-hCCHHHHHHhc-------cCC--Ch---HHHHHHHHHHHHHhCCCcHHH
Q psy9169          87 NPKMRMIATRSARKMLSKERHPPIDELI-E-AGVVPICVELL-------DDE--NP---NTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii-~-~g~i~~Lv~lL-------~~~--~~---~i~~~a~~~L~nla~~~~~~~  152 (440)
                      +++.+..|+..|.+--  +..+....+. . -|.+..|++=+       ..+  ++   .-...|+..|..+|+ +++.+
T Consensus         8 ~~~~Re~Al~eLsk~r--~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKR--ESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTC--CC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTH
T ss_pred             CcchHHHHHHHHHHhh--hcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHH
Confidence            5788999998887652  2323343333 3 37777765533       111  11   122345555556676 58889


Q ss_pred             HHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169         153 MTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIAG-DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI  226 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~-~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L  226 (440)
                      ..++++.+.-.|..+|...+     +.+|-.+++++|.+.. ++++.-..++..+++|..++.++.++ +-.+..|+..+
T Consensus        85 ~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gs-elSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGS-ELSKTVATFIL  163 (262)
T ss_dssp             HHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHH
T ss_pred             HHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhcc-HHHHHHHHHHH
Confidence            99999999888888886543     6788899999999994 55677788889999999999999876 55666677777


Q ss_pred             HhhhhCCC-------CCCCHHHHhhHHHHHHH-hhcCCCHHHHHHHHHHHHHhccCChhh
Q psy9169         227 SNLCRNKN-------PAPDFEKIKICLPLLNQ-LIHTTDVETLSDICWALSYISDGHNDK  278 (440)
Q Consensus       227 ~~l~~~~~-------~~~~~~~~~~~~~~L~~-ll~~~d~~i~~~a~~~L~~l~~~~~~~  278 (440)
                      ..+..++.       ....+..+..++..++. +....++.+...++++...|+++...+
T Consensus       164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar  223 (262)
T PF04078_consen  164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAR  223 (262)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHH
T ss_pred             HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHH
Confidence            66665431       11233344455554443 445678999999999999999877643

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.75  E-value=0.15  Score=47.70  Aligned_cols=171  Identities=13%  Similarity=0.082  Sum_probs=113.4

Q ss_pred             CCHHHHH-HhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh-CCCchhH
Q psy9169         117 GVVPICV-ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARAR  194 (440)
Q Consensus       117 g~i~~Lv-~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-~~~~~~r  194 (440)
                      +++..|+ ..+.+.++.+|..++.+|+-++.-+.+...     ..++.+...++..+..++..|+.++..+. .++...-
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4555555 455888999999999999999977554332     34677888887778999999999999887 2222211


Q ss_pred             HHH-------HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----CCCHHHHHH
Q psy9169         195 DLL-------LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----TTDVETLSD  263 (440)
Q Consensus       195 ~~i-------~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----~~d~~i~~~  263 (440)
                      +..       ....++..+...+.+.+ ++++..++..++.|.-...-..    ...++..|+-+..    .++..++..
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSEN-PELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            111       12346667777777774 8899999999999886652222    2334444433332    234566666


Q ss_pred             HHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC
Q psy9169         264 ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE  298 (440)
Q Consensus       264 a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~  298 (440)
                      ....+-..+..+... +..+....+|.+-.+...+
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            666666777666655 5666677777777776554

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.70  E-value=0.0069  Score=45.95  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC
Q psy9169         219 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE  298 (440)
Q Consensus       219 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~  298 (440)
                      ++-++++|..++.+- +.........++|+++..+.++|..++..||.+|.+++....+.+-. .=..+++.|.+++.++
T Consensus         3 R~ggli~Laa~ai~l-~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIAL-GKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHc-hHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence            455677888877665 22334456889999999999999999999999999999655432211 1146788899999999


Q ss_pred             ChhHHHHHHHHHHH
Q psy9169         299 ETTILTAALRTVGN  312 (440)
Q Consensus       299 ~~~v~~~al~~L~n  312 (440)
                      ++.|+..| ..|-+
T Consensus        81 d~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   81 DENVRSAA-ELLDR   93 (97)
T ss_pred             chhHHHHH-HHHHH
Confidence            99988766 33433

>KOG0915|consensus

Probab=96.69  E-value=0.12  Score=56.50  Aligned_cols=221  Identities=14%  Similarity=0.156  Sum_probs=130.8

Q ss_pred             CHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         118 VVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       118 ~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      .|-.|+++- ++....-+.-|+.-++.|+....+..+... .-.||.|.++=.+|+..|+..-..+...|..|+...-+.
T Consensus       957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen  957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred             HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence            445555555 444455666778888888765433222222 357899999999999999887666666677775544444


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH-HHHhhHHHHHHHhhcCCCHHHHH---HHHHHHHHhc
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-EKIKICLPLLNQLIHTTDVETLS---DICWALSYIS  272 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~~L~~ll~~~d~~i~~---~a~~~L~~l~  272 (440)
                      .+. .+++.|+.-+.+.. =.+++.+|.+|..|.++. +..++ ....++...+...+.+-.+.++.   .++.+|+.++
T Consensus      1036 y~n-eIl~eLL~~lt~ke-wRVReasclAL~dLl~g~-~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1036 YLN-EILDELLVNLTSKE-WRVREASCLALADLLQGR-PFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred             HHH-HHHHHHHHhccchh-HHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432 35666666665554 679999999999999996 32222 12233333344433333344444   4566666666


Q ss_pred             cCCh-----hhHHHHHhcCChHHHHHh-ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhH
Q psy9169         273 DGHN-----DKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI  344 (440)
Q Consensus       273 ~~~~-----~~~~~l~~~g~~~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i  344 (440)
                      ...-     ...+.++ ..++|.|+.- +.+.-++++..++.++..++-+......... ..+++.|++....-++.+
T Consensus      1113 vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~v 1188 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQV 1188 (1702)
T ss_pred             hhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHH
Confidence            2111     1111111 2334544432 1255678999999999999877665443322 246777777776655543

>KOG2274|consensus

Probab=96.66  E-value=0.7  Score=48.18  Aligned_cols=239  Identities=15%  Similarity=0.157  Sum_probs=141.7

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARAR  194 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r  194 (440)
                      +++..|+++......++-.....+|+..+..+++... -.++.+.|.++.++.  ++++.+...+-.++-.++.. ..+ 
T Consensus       530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~-  606 (1005)
T KOG2274|consen  530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AAN-  606 (1005)
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHh-
Confidence            5667777777666778887888888888887776543 345567777666664  34566666666666666531 111 


Q ss_pred             HHHHhcCChHHHHhhhCCCC---cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCCCHHHHHHHHHHHHH
Q psy9169         195 DLLLGLGTMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSY  270 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~L~~  270 (440)
                      ..-...-.||.|++.+....   +.....-++..|..+.++.+++..-.....++|++.++. +++|.++...+-.+|..
T Consensus       607 ~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra  686 (1005)
T KOG2274|consen  607 YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRA  686 (1005)
T ss_pred             hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHH
Confidence            11112346899999998443   356777788888888888867666677788899988876 55778899999999988


Q ss_pred             hccCChhhHHHHHhcC------ChHHHHHhccCCChhHHHHHHHHHHHhhc----CChHHHHHHHHcCCHH-HHHHHhcC
Q psy9169         271 ISDGHNDKIQAVVDTG------VVPRLVELLDSEETTILTAALRTVGNIAT----GNDHQTDCVIQAGGLQ-KMKKLLSS  339 (440)
Q Consensus       271 l~~~~~~~~~~l~~~g------~~~~Lv~lL~~~~~~v~~~al~~L~nl~~----~~~~~~~~l~~~g~l~-~L~~ll~~  339 (440)
                      +.....+....--..+      ++..+-++|.-   +.-..++..+|.++.    .-......-++ .++. .+.++-..
T Consensus       687 ~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp---~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~a  762 (1005)
T KOG2274|consen  687 LISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP---ETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQA  762 (1005)
T ss_pred             HHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC---ccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHh
Confidence            8876554433222222      23334444432   222233334444432    21111111111 1122 22333334


Q ss_pred             CChhHHHHHHHHHHHHhcCChHH
Q psy9169         340 SRVNIVKEAAWTISNITAGNSRQ  362 (440)
Q Consensus       340 ~~~~i~~~a~~~L~nl~~~~~~~  362 (440)
                      ....+......+++++.....++
T Consensus       763 e~lsviQsLi~VfahL~~t~~~~  785 (1005)
T KOG2274|consen  763 ETLSVIQSLIMVFAHLVHTDLDQ  785 (1005)
T ss_pred             hhHHHHHHHHHHHHHHhhCCHHH
Confidence            45566666777777776655444

>KOG1058|consensus

Probab=96.64  E-value=0.16  Score=51.57  Aligned_cols=239  Identities=13%  Similarity=0.186  Sum_probs=143.7

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH
Q psy9169          87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ  166 (440)
Q Consensus        87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~  166 (440)
                      ++.+|.-.+..+++.....  |.    .++..+..+..+|.+.++.+.++|+..|..++.. +....     -+...++.
T Consensus       219 ~~~LqlViVE~Irkv~~~~--p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk-----~Aa~~~i~  286 (948)
T KOG1058|consen  219 NDSLQLVIVELIRKVCLAN--PA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALK-----AAASTYID  286 (948)
T ss_pred             cHHHHHHHHHHHHHHHhcC--HH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHH-----HHHHHHHH
Confidence            3445555555555543311  11    1223466777888777899999999999988765 32221     12334444


Q ss_pred             hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169         167 LLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC  245 (440)
Q Consensus       167 lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  245 (440)
                      ++-. ++-.+.-..+.-|..+...   . ..+ -.|.+--++++|..++ .++++.++.....|....+       ..++
T Consensus       287 l~~kesdnnvklIvldrl~~l~~~---~-~~i-l~~l~mDvLrvLss~d-ldvr~Ktldi~ldLvssrN-------vedi  353 (948)
T KOG1058|consen  287 LLVKESDNNVKLIVLDRLSELKAL---H-EKI-LQGLIMDVLRVLSSPD-LDVRSKTLDIALDLVSSRN-------VEDI  353 (948)
T ss_pred             HHHhccCcchhhhhHHHHHHHhhh---h-HHH-HHHHHHHHHHHcCccc-ccHHHHHHHHHHhhhhhcc-------HHHH
Confidence            4432 2223333334444444311   1 111 1344555667776666 8899999888888887653       2233


Q ss_pred             HHHHHHhh-c------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Q psy9169         246 LPLLNQLI-H------TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND  318 (440)
Q Consensus       246 ~~~L~~ll-~------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~  318 (440)
                      +..|..=+ .      ..+..-+.....++...+..-++..     +.+++.|++.+.+.++......+..+.......+
T Consensus       354 v~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p  428 (948)
T KOG1058|consen  354 VQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP  428 (948)
T ss_pred             HHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence            33333222 1      1234567778888888887766543     3458999999999988877778888887776666


Q ss_pred             HHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHHhcCCh
Q psy9169         319 HQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNITAGNS  360 (440)
Q Consensus       319 ~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~L~nl~~~~~  360 (440)
                      ..+..+     +..|+.-+.. ....+.+.|.|.++..|.+..
T Consensus       429 ~Lr~~i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  429 NLRASI-----IEKLLETFPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             hHHHHH-----HHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence            544433     3444444432 345788899999999998754

>KOG4653|consensus

Probab=96.64  E-value=0.076  Score=54.65  Aligned_cols=224  Identities=9%  Similarity=0.056  Sum_probs=143.3

Q ss_pred             HHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q psy9169         121 ICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL  200 (440)
Q Consensus       121 ~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~  200 (440)
                      .-+..+.++.+.++..++..|..+...- .....+...+++...+.+|++.++-+--.|+..+..+|.-.+        .
T Consensus       731 eai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~--------e  801 (982)
T KOG4653|consen  731 EAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP--------E  801 (982)
T ss_pred             HHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc--------h
Confidence            3344446677789999999999998643 445566677999999999999998888889998888874433        3


Q ss_pred             CChHHHHhhhCCCC---cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169         201 GTMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       201 g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                      .++|.+...-.+..   ..+.+-.+-.++.++.+..++ ........++......++++|...+..++..++.+|.....
T Consensus       802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~  880 (982)
T KOG4653|consen  802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF  880 (982)
T ss_pred             hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence            46777776433211   123444455677776655422 22223345666777777777888899999999999965443


Q ss_pred             hHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHc---CCHHHHHHHhcCC-ChhHHHHHHHHH
Q psy9169         278 KIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQA---GGLQKMKKLLSSS-RVNIVKEAAWTI  352 (440)
Q Consensus       278 ~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~---g~l~~L~~ll~~~-~~~i~~~a~~~L  352 (440)
                      .....+ ..++..++.+.. +.+.-++++|+..+..+..|.....-.+...   .....+..+.... +..++..|+.++
T Consensus       881 ~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  881 QVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             hhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            222211 233455555553 4567899999999999988766443333322   2333344444433 445667777666


Q ss_pred             HHH
Q psy9169         353 SNI  355 (440)
Q Consensus       353 ~nl  355 (440)
                      --+
T Consensus       960 eei  962 (982)
T KOG4653|consen  960 EEI  962 (982)
T ss_pred             HHH
Confidence            544

>KOG1078|consensus

Probab=96.58  E-value=0.24  Score=50.66  Aligned_cols=253  Identities=16%  Similarity=0.168  Sum_probs=137.1

Q ss_pred             HhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--------H
Q psy9169         124 ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--------D  195 (440)
Q Consensus       124 ~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--------~  195 (440)
                      .+|.+....+..+|+.++.++...++....     .++..|--++.++...+|-.|+.+|..+|...|..-        .
T Consensus       252 s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~  326 (865)
T KOG1078|consen  252 SCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES  326 (865)
T ss_pred             HHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence            344677788999999999999765443221     278888888999999999999999999995544321        1


Q ss_pred             HHHhcC---ChHHHHhhhCCCCc---HHHHHHHHHHHHhhhhCCCCCCCH-----------HHHhhHHHHHHHhhcC-CC
Q psy9169         196 LLLGLG---TMPQILALVQPNTP---TTFLRNIVWAISNLCRNKNPAPDF-----------EKIKICLPLLNQLIHT-TD  257 (440)
Q Consensus       196 ~i~~~g---~i~~L~~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~~~-----------~~~~~~~~~L~~ll~~-~d  257 (440)
                      .+-..+   .-..+..+|+.+..   ..+........++++..-. ....           ......++.|..+|.. +-
T Consensus       327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFK-ivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg  405 (865)
T KOG1078|consen  327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFK-IVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGG  405 (865)
T ss_pred             hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccce-EEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccC
Confidence            111000   12223333433331   1122222222222222210 0000           0112334444455543 33


Q ss_pred             HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC-hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHH
Q psy9169         258 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL  336 (440)
Q Consensus       258 ~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~l  336 (440)
                      -+-..+...++..+....++...     .++..|..++.+.. ..+....+..||.=+...+.      ...-+..+.+.
T Consensus       406 ~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~------Pskyir~iyNR  474 (865)
T KOG1078|consen  406 FEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPN------PSKYIRFIYNR  474 (865)
T ss_pred             chHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCC------cchhhHHHhhh
Confidence            45566666666666654443322     23556666664432 22333333333322211111      11223444444


Q ss_pred             hcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         337 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       337 l~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                      +.-.+..+|..|..+|.++.++++.-...                  ..-.+..++...+.+|+++|.-.+...-
T Consensus       475 viLEn~ivRaaAv~alaKfg~~~~~l~~s------------------I~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  475 VILENAIVRAAAVSALAKFGAQDVVLLPS------------------ILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcCCCCcccc------------------HHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            44456778889999999998765432222                  2345677889999999999998888775

>KOG4535|consensus

Probab=96.58  E-value=0.071  Score=51.34  Aligned_cols=272  Identities=10%  Similarity=0.036  Sum_probs=145.3

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh-----CCCchhHHHHHhcCChHHH
Q psy9169         132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-----GDGARARDLLLGLGTMPQI  206 (440)
Q Consensus       132 ~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~-----~~~~~~r~~i~~~g~i~~L  206 (440)
                      .++.+++.+|..++..-.-.+..++  .....+...+....+.+.+.+..++..+-     .+.|+..+.-...+.+-.+
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            4778888888888765333233333  33445555566677888888888776664     2333322222222211111


Q ss_pred             ------HhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169         207 ------LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ  280 (440)
Q Consensus       207 ------~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~  280 (440)
                            -....+..........|-+++++....-....-......+..+..+-.+.+.-++..|.+++..+.-+..-...
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d  427 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD  427 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence                  11222222245667777777777643211110000011111111222233445777888888877776654444


Q ss_pred             HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc----CCh---HHHHHHHHcCCHHHHHHHhcC---CChhHHHHHHH
Q psy9169         281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT----GND---HQTDCVIQAGGLQKMKKLLSS---SRVNIVKEAAW  350 (440)
Q Consensus       281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~----~~~---~~~~~l~~~g~l~~L~~ll~~---~~~~i~~~a~~  350 (440)
                      ...-..+...+...|.+.....+..+.|++|||..    +.+   .+...+.-. .+..+......   .+..++..|..
T Consensus       428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~navr  506 (728)
T KOG4535|consen  428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSNAVR  506 (728)
T ss_pred             HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhHHHH
Confidence            44444556667777777777899999999999974    222   233333321 23333333322   24578999999


Q ss_pred             HHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         351 TISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       351 ~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                      +|.|+..    ..+.+.+.+     ...+++......+.......+-.|+=.|+.++.++|..+.
T Consensus       507 aLgnllQ----vlq~i~~~~-----~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a  562 (728)
T KOG4535|consen  507 ALGNLLQ----FLQPIEKPT-----FAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA  562 (728)
T ss_pred             HHhhHHH----HHHHhhhcc-----HHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence            9999863    223333211     1111111112222223345577899999999999998664

>KOG1943|consensus

Probab=96.54  E-value=0.28  Score=51.95  Aligned_cols=198  Identities=16%  Similarity=0.159  Sum_probs=128.4

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC
Q psy9169         159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD  238 (440)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  238 (440)
                      +++..|+..|++.+..|+-.|+..++.++...|.    .+...++...++++....+......+|-+|+.|+...-  ..
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl--Ll  414 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL--LL  414 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC--cc
Confidence            5677788888888899999999999999977662    22334566777777766667889999999999997652  22


Q ss_pred             HHHHhhHHHHHHHhhcC--------CCHHHHHHHHHHHHHhccCChhh-HHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169         239 FEKIKICLPLLNQLIHT--------TDVETLSDICWALSYISDGHNDK-IQAVVDTGVVPRLVELLDSEETTILTAALRT  309 (440)
Q Consensus       239 ~~~~~~~~~~L~~ll~~--------~d~~i~~~a~~~L~~l~~~~~~~-~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~  309 (440)
                      ......++|.+..-+.-        .-..|+.+||.+++.++...... ...+++.=.-..|...+-+++..++..|..+
T Consensus       415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA  494 (1133)
T KOG1943|consen  415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA  494 (1133)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence            33456788888877743        23468899999998888655422 2222222112233444566777888888888


Q ss_pred             HHHhhcC--Ch-HH----------------------HHHHHH-cCCHHHHHH-HhcC----CChhHHHHHHHHHHHHhcC
Q psy9169         310 VGNIATG--ND-HQ----------------------TDCVIQ-AGGLQKMKK-LLSS----SRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       310 L~nl~~~--~~-~~----------------------~~~l~~-~g~l~~L~~-ll~~----~~~~i~~~a~~~L~nl~~~  358 (440)
                      +...+..  +- ..                      ...+.+ .|....+++ ++.+    =+..++..++|+|.++...
T Consensus       495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~  574 (1133)
T KOG1943|consen  495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT  574 (1133)
T ss_pred             HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence            7765532  10 00                      001111 233344443 3333    3678999999999998866


Q ss_pred             ChHH
Q psy9169         359 NSRQ  362 (440)
Q Consensus       359 ~~~~  362 (440)
                      .++.
T Consensus       575 ~pk~  578 (1133)
T KOG1943|consen  575 EPKY  578 (1133)
T ss_pred             hHHh
Confidence            5544

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.51  E-value=0.19  Score=45.29  Aligned_cols=100  Identities=11%  Similarity=0.010  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC
Q psy9169         133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ  211 (440)
Q Consensus       133 i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~  211 (440)
                      ....|+.+|.-++--++..+..+.....+..|+.+|.. ..+.++..++.+|..+..+++.....+-..+++..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            45667889999998899999999999999999999954 45889999999999999998988888889999999999999


Q ss_pred             CCC-cHHHHHHHHHHHHhhhhC
Q psy9169         212 PNT-PTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       212 ~~~-~~~~~~~a~~~L~~l~~~  232 (440)
                      +.. +.+++-.++..|.-....
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHcc
Confidence            543 567777777766655543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4653|consensus

Probab=96.49  E-value=0.15  Score=52.60  Aligned_cols=223  Identities=13%  Similarity=0.171  Sum_probs=138.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      +...+..++++-+.++-.|+..++.++...  .....+...+++..+++.|++.++-+-..|+..+..+|.-.+      
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r--~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------  800 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR--KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------  800 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhc--chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc------
Confidence            455566677788889999999999998643  234566678999999999999999999999998888885433      


Q ss_pred             HhcCCHHHHHH-hhCCCC---HHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         156 INANAIPKFLQ-LLSSPH---LNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       156 ~~~g~i~~L~~-lL~~~~---~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                        ..++|.|.. +.+..+   ++.+-..-.++++++.. ++-+... .. -.+...+..+++++ ...+..++..++++|
T Consensus       801 --e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~~-~Li~tfl~gvrepd-~~~RaSS~a~lg~Lc  875 (982)
T KOG4653|consen  801 --EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-KA-VLINTFLSGVREPD-HEFRASSLANLGQLC  875 (982)
T ss_pred             --hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-HH-HHHHHHHHhcCCch-HHHHHhHHHHHHHHH
Confidence              467888887 333322   23333344566665522 1111111 11 34566667777553 677888999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhcc-CCChhHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLD-SEETTILTA  305 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~-~~~~~v~~~  305 (440)
                      +-..-.. .....+++..++.+... +...++.+|...+..+-.+.....-.+...   .....+..+.. +++..++..
T Consensus       876 q~~a~~v-sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klh  954 (982)
T KOG4653|consen  876 QLLAFQV-SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLH  954 (982)
T ss_pred             HHHhhhh-hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence            7642111 12445666666666654 457788999999988887655332222211   22223333332 234445555


Q ss_pred             HHHHHHH
Q psy9169         306 ALRTVGN  312 (440)
Q Consensus       306 al~~L~n  312 (440)
                      |+.++-.
T Consensus       955 aql~lee  961 (982)
T KOG4653|consen  955 AQLCLEE  961 (982)
T ss_pred             HHHHHHH
Confidence            5555443

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.47  E-value=1.5  Score=46.32  Aligned_cols=236  Identities=16%  Similarity=0.183  Sum_probs=137.7

Q ss_pred             HhCCHHHHHHhccC-----CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC----CCC----HHHHHHHHH
Q psy9169         115 EAGVVPICVELLDD-----ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS----SPH----LNLAEQATW  181 (440)
Q Consensus       115 ~~g~i~~Lv~lL~~-----~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~----~~~----~~v~~~a~~  181 (440)
                      +.|++..|+.++.+     ....+-...+..|..++ .-+.+++.+++.|+++.|+..|.    .+.    .++.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            35788888888832     12233344455555544 55889999999999999998884    333    678888887


Q ss_pred             HHHHhhCCCchhHH----HHHhc--------CChHHHHhhhCCC---CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH
Q psy9169         182 ALGNIAGDGARARD----LLLGL--------GTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL  246 (440)
Q Consensus       182 ~L~nl~~~~~~~r~----~i~~~--------g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  246 (440)
                      ++..+..+......    .....        .-+..|++.+.+.   .+..+....+..|.+|+.+.... ....+..+-
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~-m~~Lv~~F~  272 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK-MDALVEHFK  272 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH-HHHHHHHHH
Confidence            77777643211100    00111        1266677777643   34788999999999999987321 111122222


Q ss_pred             HHHHHhhc-----CCCHHHHHHHHHHHHHhccCC------hhhHHHHHhcCChHHHHHhccCCC--------hh------
Q psy9169         247 PLLNQLIH-----TTDVETLSDICWALSYISDGH------NDKIQAVVDTGVVPRLVELLDSEE--------TT------  301 (440)
Q Consensus       247 ~~L~~ll~-----~~d~~i~~~a~~~L~~l~~~~------~~~~~~l~~~g~~~~Lv~lL~~~~--------~~------  301 (440)
                      |.+ ++=.     ..+....   +.+++.++.+-      ....+.+++.|++...+.+|...-        ++      
T Consensus       273 p~l-~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~  348 (802)
T PF13764_consen  273 PYL-DFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLS  348 (802)
T ss_pred             Hhc-ChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhc
Confidence            222 1111     1122233   44444444321      355688899999999999885421        11      


Q ss_pred             --HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhc
Q psy9169         302 --ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITA  357 (440)
Q Consensus       302 --v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~  357 (440)
                        -...++..|.-++.++.. ++.++..++++.+..+=... +..|=.-|--.|-.+..
T Consensus       349 ~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  349 RPSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             CCcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence              234577778888887664 45567777886665555433 34454445555555554

>KOG3036|consensus

Probab=96.46  E-value=0.41  Score=42.23  Aligned_cols=197  Identities=14%  Similarity=0.153  Sum_probs=123.6

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-hCCHHHHHHhc-------c----CCChHHH-HHHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIE-AGVVPICVELL-------D----DENPNTQ-FEATWA  140 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~i~~Lv~lL-------~----~~~~~i~-~~a~~~  140 (440)
                      ..+.+++-.+.+  +..+..|+..+.+.....+ .-...+.. -|....|+.-.       .    ++...-| ..|+..
T Consensus        26 dk~~~~i~~l~~--~p~rE~aL~ELskkre~~~-dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~L  102 (293)
T KOG3036|consen   26 DKAYQLILSLVS--PPTREMALLELSKKREPFP-DLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALAL  102 (293)
T ss_pred             cchhhHHHHhhC--CchHHHHHHHHHHhccCCc-cccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHH
Confidence            346666655554  3455666666665422111 11223333 24444444322       1    1122233 345555


Q ss_pred             HHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCC
Q psy9169         141 LTNIASGTSEQTMTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNT  214 (440)
Q Consensus       141 L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~  214 (440)
                      |..+++ .++.+..++++.+--.|-.+|..     +.+.+|-.++++|+.+... +.+.-..+...+++|..++.+..++
T Consensus       103 lQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS  181 (293)
T KOG3036|consen  103 LQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS  181 (293)
T ss_pred             HHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc
Confidence            555555 48889999998887777777753     3478999999999999954 4556677779999999999999888


Q ss_pred             cHHHHHHHHHHHHhhhhCCCCCC--------CHHHHhhHHHHHH-HhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         215 PTTFLRNIVWAISNLCRNKNPAP--------DFEKIKICLPLLN-QLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       215 ~~~~~~~a~~~L~~l~~~~~~~~--------~~~~~~~~~~~L~-~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                       +.-+..|+..+..+..++ ...        .+..+..++..++ ++.+.+++.+...++++..+|+++..
T Consensus       182 -elSKtvA~fIlqKIlldD-~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr  250 (293)
T KOG3036|consen  182 -ELSKTVATFILQKILLDD-VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR  250 (293)
T ss_pred             -HHHHHHHHHHHHHHhhcc-ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence             666777777777766554 221        2223333444333 44466888999999999999997654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.42  E-value=0.015  Score=50.31  Aligned_cols=111  Identities=16%  Similarity=0.180  Sum_probs=78.6

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc---------CCChHHHHHHHHHHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD---------DENPNTQFEATWALTNI  144 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~---------~~~~~i~~~a~~~L~nl  144 (440)
                      .....+++.+.+.....  ..+..|+..+...+...++.+++.|++..|+.+|.         ..+..++.+++.||..|
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            45677888888765543  44455555554443234788999999999999882         13457899999999999


Q ss_pred             hCCCcHHHHH-HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy9169         145 ASGTSEQTMT-VINANAIPKFLQLLSSPHLNLAEQATWALGNIA  187 (440)
Q Consensus       145 a~~~~~~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~  187 (440)
                      .... ..... +-..+++..|+..|.+++..++..++.+|..+|
T Consensus       144 ~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            8654 44444 445789999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1991|consensus

Probab=96.39  E-value=0.5  Score=49.66  Aligned_cols=297  Identities=13%  Similarity=0.130  Sum_probs=162.7

Q ss_pred             CCHHHHHHhcc--------CCChHHHHHHHHHHHHHhCC--CcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy9169         117 GVVPICVELLD--------DENPNTQFEATWALTNIASG--TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI  186 (440)
Q Consensus       117 g~i~~Lv~lL~--------~~~~~i~~~a~~~L~nla~~--~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  186 (440)
                      |+++.++..|.        ..++.-..-|+.+++++++-  ...--+..++.=+++.+...++++..-+|..|||+++.+
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            45666666663        12345566788888888742  011112233444566777777888899999999999999


Q ss_pred             hCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC--HHHHhhHHHHHHHhhcCCCHHHHHHH
Q psy9169         187 AGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKIKICLPLLNQLIHTTDVETLSDI  264 (440)
Q Consensus       187 ~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~~L~~ll~~~d~~i~~~a  264 (440)
                      +...  +.+...-..++....+.|.++....++..|+.+|..+..+......  ...+.++++.|..+.+..+.+....+
T Consensus       490 ~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~v  567 (1010)
T KOG1991|consen  490 SSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNV  567 (1010)
T ss_pred             Hhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHH
Confidence            9321  2223333445667777777666688999999999999887632212  11235556666666666665555555


Q ss_pred             HHHH-HHhccCChhhHHHHHhcCChHHHHHhccC---C---ChhHHHHHHHHHHHhhc------CChHHHHHHHHcCCHH
Q psy9169         265 CWAL-SYISDGHNDKIQAVVDTGVVPRLVELLDS---E---ETTILTAALRTVGNIAT------GNDHQTDCVIQAGGLQ  331 (440)
Q Consensus       265 ~~~L-~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~---~---~~~v~~~al~~L~nl~~------~~~~~~~~l~~~g~l~  331 (440)
                      +..+ +..+..-......+. ..+.....+++..   .   +.+-...|.++|..+.+      ..++..+ =++..+++
T Consensus       568 me~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~  645 (1010)
T KOG1991|consen  568 MEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLP  645 (1010)
T ss_pred             HHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHH
Confidence            5543 233322211111111 2334555566653   1   12233444444444432      2232222 22334677


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcC------cHHHHHHHhcCC------cHHH
Q psy9169         332 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESG------GLEKLEALQHHE------NETV  399 (440)
Q Consensus       332 ~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g------~l~~l~~L~~~~------~~~v  399 (440)
                      .+-.++.+.-.++-.+++-.+.+++.-.++---.+-.  -...+...+.+-|      ....|.+....+      ++.-
T Consensus       646 vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y  723 (1010)
T KOG1991|consen  646 VIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPDY  723 (1010)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccchH
Confidence            7777887777788888888888887543210000000  0011112222222      233444433333      4455


Q ss_pred             HHHHHHHHHhhCCCCccccc
Q psy9169         400 YQKCYKIISMAFNDSAENSI  419 (440)
Q Consensus       400 ~~~a~~il~~~~~~~~~~~~  419 (440)
                      .+....++.+.+..++.+|.
T Consensus       724 ~~il~~i~~~~l~~e~~~D~  743 (1010)
T KOG1991|consen  724 LQILLEIIKKVLTSENGEDS  743 (1010)
T ss_pred             HHHHHHHHHHHHcCCCCchH
Confidence            56667888888888766554

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.38  E-value=0.46  Score=44.61  Aligned_cols=189  Identities=14%  Similarity=0.157  Sum_probs=115.2

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCCCHH
Q psy9169         164 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDFE  240 (440)
Q Consensus       164 L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~  240 (440)
                      .+..+.+.....|+.++..|.++...... .+.+.  ...++..+.+.++.+.. +-...++.++.-++-.-. ......
T Consensus        48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~e  125 (309)
T PF05004_consen   48 AIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEE  125 (309)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHH
Confidence            34444555577888888888887744322 23332  23357777888887774 445566666666664421 123345


Q ss_pred             HHhhHHHHHHHhhcCCC--HHHHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHH--Hhcc----------CCChhHH
Q psy9169         241 KIKICLPLLNQLIHTTD--VETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLV--ELLD----------SEETTIL  303 (440)
Q Consensus       241 ~~~~~~~~L~~ll~~~d--~~i~~~a~~~L~~l~---~~~~~~~~~l~~~g~~~~Lv--~lL~----------~~~~~v~  303 (440)
                      ....+.|.|...+....  ..++..++.+|+-++   ....+.+...++  .+..+.  ..++          .+++.+.
T Consensus       126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            56788899998887643  455566665665544   333333331111  122111  1111          1235688


Q ss_pred             HHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         304 TAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       304 ~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ..|+.+-+-|.+.-+. .....++ ..++.|..+|.+.+..+|..|.-+|.-|..
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999888888765554 2233332 468999999999999999999999887764

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0414|consensus

Probab=96.36  E-value=0.032  Score=59.14  Aligned_cols=160  Identities=18%  Similarity=0.190  Sum_probs=122.8

Q ss_pred             CCHHHHHHhc----cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCc
Q psy9169         117 GVVPICVELL----DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGA  191 (440)
Q Consensus       117 g~i~~Lv~lL----~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~  191 (440)
                      ...|.+++..    ..++|++|..|.-+|+.+..-+.+...     ..+|.|+..|. ++++.+|.+++-++|-++---|
T Consensus       919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            3567777777    356799999999999999876555433     45788999997 7889999999999999985444


Q ss_pred             hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy9169         192 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI  271 (440)
Q Consensus       192 ~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l  271 (440)
                      ..-+     ..-+.|...|.+.+ +.+++.|..+|++|..+.     +..+.|.++.+..+|.+++++|..-|=..+..|
T Consensus       994 nlie-----~~T~~Ly~rL~D~~-~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  994 NLIE-----PWTEHLYRRLRDES-PSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             cccc-----hhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            4322     23456677776666 899999999999999775     567889999999999999999988888788778


Q ss_pred             ccCChhhHHHHHhcCChHHHHHhccCC
Q psy9169         272 SDGHNDKIQAVVDTGVVPRLVELLDSE  298 (440)
Q Consensus       272 ~~~~~~~~~~l~~~g~~~~Lv~lL~~~  298 (440)
                      +......      .+++|-++.-|.++
T Consensus      1063 s~k~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred             hhcccch------hhhchHHHHhhccC
Confidence            7655322      24567777666665

>KOG4535|consensus

Probab=96.29  E-value=0.66  Score=44.96  Aligned_cols=101  Identities=23%  Similarity=0.238  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHH
Q psy9169         257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL  336 (440)
Q Consensus       257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~l  336 (440)
                      -+......|.++++|.....+....=.+.-.+-.+...=.+.+.-++.+|+++++-.+.+..-.+....-.+....+...
T Consensus       362 ~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~s  441 (728)
T KOG4535|consen  362 HPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMS  441 (728)
T ss_pred             CCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHH
Confidence            34567888888888875433221000000111122222234445688899999998887665555545555566777777


Q ss_pred             hcCCChhHHHHHHHHHHHHhc
Q psy9169         337 LSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       337 l~~~~~~i~~~a~~~L~nl~~  357 (440)
                      +.+..-..|..++|+++||+.
T Consensus       442 l~d~~ln~r~KaawtlgnITd  462 (728)
T KOG4535|consen  442 LEDKSLNVRAKAAWSLGNITD  462 (728)
T ss_pred             hhhHhHhHHHHHHHHhhhhHH
Confidence            777777899999999999985

>KOG1820|consensus

Probab=96.28  E-value=0.2  Score=52.68  Aligned_cols=188  Identities=18%  Similarity=0.115  Sum_probs=133.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      -+.+-..+.|.++..+.+|+..+...++...  ....-...|.+-.++... .+.|-.+...++.+|..|+.........
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~  332 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK  332 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence            3455666778999999999999998886543  111112245666667766 7888889999999999998765443222


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                       ...++.|.|+..+......+++.+..++-.++...+-       ....+.++..+.+.. +.+...+...+....+..+
T Consensus       333 -~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~~~~~  403 (815)
T KOG1820|consen  333 -YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKN-PQIKGECLLLLDRKLRKLG  403 (815)
T ss_pred             -HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHhhcC
Confidence             2247889999999988888888777777666542221       234677777787777 6777776665655555543


Q ss_pred             -CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169         235 -PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG  274 (440)
Q Consensus       235 -~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~  274 (440)
                       ..........++|.++...++.+.+++..+..+++-+...
T Consensus       404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence             2334445688999999999999999999999999877643

>KOG3665|consensus

Probab=96.27  E-value=0.86  Score=47.75  Aligned_cols=196  Identities=18%  Similarity=0.201  Sum_probs=120.4

Q ss_pred             HHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH--HHHHHhhcCCC-H
Q psy9169         182 ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL--PLLNQLIHTTD-V  258 (440)
Q Consensus       182 ~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~ll~~~d-~  258 (440)
                      +|+++....+.....++..|++..+...++.-+..++...+...+.+++....... .......+  ..+-.++..-+ .
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~-~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRE-LLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcchh
Confidence            45677788888889999999999999999977778999999999999997652222 11111111  12223444433 3


Q ss_pred             HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHH-HHHHh
Q psy9169         259 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK-MKKLL  337 (440)
Q Consensus       259 ~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~-L~~ll  337 (440)
                      +.-..++..|+.+....++....    +           ....+...-..++.......    ..+.....+.. +..++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~----~-----------~r~~~~~~l~e~i~~~~~~~----~~~~~~~~f~~~~~~il  633 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTEC----V-----------FRNSVNELLVEAISRWLTSE----IRVINDRSFFPRILRIL  633 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccc----c-----------chHHHHHHHHHHhhccCccc----eeehhhhhcchhHHHHh
Confidence            66777777777776554421000    0           01122222222233222221    11222223333 55566


Q ss_pred             cCC-ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhh
Q psy9169         338 SSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMA  410 (440)
Q Consensus       338 ~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~  410 (440)
                      ..+ .+..+..|.|++.+++...++             ++..+.+.|++..+.++-.+. -.++...+..++...
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQNKE-------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcChh-------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            544 567899999999999987653             578888999999888864433 556777777776654

>KOG2956|consensus

Probab=96.26  E-value=0.22  Score=47.99  Aligned_cols=182  Identities=15%  Similarity=0.142  Sum_probs=115.7

Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          78 EMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        78 ~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      .++..+.+. ..+.+..|+..|..+++...-...+.. -..++..+++.| .+.++.++..|+++|..++...+.   .+
T Consensus       290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l  365 (516)
T KOG2956|consen  290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RL  365 (516)
T ss_pred             HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hh
Confidence            334444433 456777788888888876642212222 234677788888 448889999999999999865432   22


Q ss_pred             Hhc--CCHHHHHHhhCCCCHHHHHHHHHH-HHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         156 INA--NAIPKFLQLLSSPHLNLAEQATWA-LGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       156 ~~~--g~i~~L~~lL~~~~~~v~~~a~~~-L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      .+.  -+|..++..-.+.+.++...|... +.-++...|..        .|..+..++...+ ......++..+..++..
T Consensus       366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D-~~~~~~~iKm~Tkl~e~  436 (516)
T KOG2956|consen  366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTAD-EPRAVAVIKMLTKLFER  436 (516)
T ss_pred             hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCc-chHHHHHHHHHHHHHhh
Confidence            221  245555565566666666555544 44455555543        2333444444433 55666677778888866


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS  272 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~  272 (440)
                      -....-...+..+.|.+++...+....++..+..+|..+.
T Consensus       437 l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  437 LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            4222222345788899999999999999999999998876

>KOG2062|consensus

Probab=96.25  E-value=0.56  Score=47.81  Aligned_cols=200  Identities=15%  Similarity=0.146  Sum_probs=119.7

Q ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169         119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLL  197 (440)
Q Consensus       119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i  197 (440)
                      ...|-+.|..++.-.-+.|...++.+..++...       .++.-+..+-.. ++..+.+-..-.|+-+....       
T Consensus       451 Ye~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~-------eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------  516 (929)
T KOG2062|consen  451 YEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ-------EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------  516 (929)
T ss_pred             HHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH-------HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------
Confidence            455666665555555555666666665543221       233334444433 33455443333333322221       


Q ss_pred             HhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         198 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL-IHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       198 ~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-l~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                       +.++=+.+-+++... ++-++...+.++.-=-.+..       ..+++..|++. .++.+.+++..|.-+|+.++..++
T Consensus       517 -qe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp  587 (929)
T KOG2062|consen  517 -QEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP  587 (929)
T ss_pred             -hhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence             112223333444444 46666666655543222211       13355555555 466788999999999999998888


Q ss_pred             hhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169         277 DKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI  355 (440)
Q Consensus       277 ~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl  355 (440)
                      +.         ++..|.+|. +-++.||.-|..+||-.|+|.....       ++..|-.+..++..-||.-|+.+++-|
T Consensus       588 ~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amI  651 (929)
T KOG2062|consen  588 EQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMI  651 (929)
T ss_pred             hh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence            66         788888885 4588999999999999998775321       244555566666667999999999987


Q ss_pred             hc
Q psy9169         356 TA  357 (440)
Q Consensus       356 ~~  357 (440)
                      .-
T Consensus       652 m~  653 (929)
T KOG2062|consen  652 MI  653 (929)
T ss_pred             HH
Confidence            74

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.24  E-value=0.13  Score=42.51  Aligned_cols=120  Identities=17%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             HHhhHHHHHHHhhcCCC------HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHH
Q psy9169         241 KIKICLPLLNQLIHTTD------VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGN  312 (440)
Q Consensus       241 ~~~~~~~~L~~ll~~~d------~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~n  312 (440)
                      +..++++.|+.++.++.      .++...++.++..|.++..-.. ..++...+.+++.++..+  +..+...|+.+|-+
T Consensus         8 I~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs   86 (160)
T PF11841_consen    8 ISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAILES   86 (160)
T ss_pred             HhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence            44678888888887654      4788889999999998764332 345667788888888654  57899999999999


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                      ++.+++...+.+.+.=-++.|+..|+.+++.++..|.-.+-.+..+.++
T Consensus        87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            9999988777777766799999999999999999998888888765433

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.21  E-value=0.35  Score=48.58  Aligned_cols=168  Identities=13%  Similarity=0.106  Sum_probs=94.0

Q ss_pred             CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHh
Q psy9169         129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA  208 (440)
Q Consensus       129 ~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~  208 (440)
                      .++..+..|+..+......-|+..+     .++..++.|..+.+..||.+|+..|-.+|.+++.....     +...|++
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~Q  103 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQ  103 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHH
Confidence            4577777888888888777676544     45677888888889999999999999999987665443     4678889


Q ss_pred             hhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc---CCCHHHHHHHHHHHHH-hccCChhhHH--HH
Q psy9169         209 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH---TTDVETLSDICWALSY-ISDGHNDKIQ--AV  282 (440)
Q Consensus       209 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~---~~d~~i~~~a~~~L~~-l~~~~~~~~~--~l  282 (440)
                      +|..++ ..-...+-++|..|...+        ..+.+..+...+.   .+|+.++..++..|.. +-.-..+...  .-
T Consensus       104 lL~tdd-~~E~~~v~~sL~~ll~~d--------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E  174 (556)
T PF05918_consen  104 LLQTDD-PVELDAVKNSLMSLLKQD--------PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKE  174 (556)
T ss_dssp             HTT----HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HH
T ss_pred             HHhccc-HHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHH
Confidence            998766 555666667777777654        1334444444443   5677888888877643 2222221111  11


Q ss_pred             HhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         283 VDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       283 ~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      .+.-++..+.++|.+-...--...+.+|..+-.
T Consensus       175 ~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  175 MEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             HHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            222335555566654333223333444454443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.17  E-value=0.69  Score=46.51  Aligned_cols=266  Identities=12%  Similarity=0.149  Sum_probs=118.1

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .+..++++..++|..+|.+|++.|-.++...+ ..+..     ++..|+++|.++++.-...+-++|..+...++.    
T Consensus        60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~~v~k-----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k----  129 (556)
T PF05918_consen   60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-EHVSK-----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK----  129 (556)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHH-----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH----
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-HHHhH-----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH----
Confidence            46667777777777777777777765533222 22222     355667777666665555555555555443332    


Q ss_pred             HHhcCCHHHHHHhhC---CCCHHHHHHHHHHHHHhhC-CCchhHH--HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         155 VINANAIPKFLQLLS---SPHLNLAEQATWALGNIAG-DGARARD--LLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       155 i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~nl~~-~~~~~r~--~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                          +.+..|...+.   +.++.+|+.++..|..-.. -.++.-.  .-.+.-++..+-.+|.+-+ .+=....+.+|..
T Consensus       130 ----~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVT-aeEF~l~m~lL~~  204 (556)
T PF05918_consen  130 ----GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVT-AEEFELFMSLLKS  204 (556)
T ss_dssp             ----HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHh
Confidence                23333333333   3456677777766633221 1111000  1111123334444554333 2223334445555


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhh------cCCCHHHHHHHHHHH----HHhccCCh--hhHHHHHhcCChHHHHHhcc
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLI------HTTDVETLSDICWAL----SYISDGHN--DKIQAVVDTGVVPRLVELLD  296 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll------~~~d~~i~~~a~~~L----~~l~~~~~--~~~~~l~~~g~~~~Lv~lL~  296 (440)
                      +-... ..........+++.+.+..      ...|++.+...+.++    -.++.+..  ..... +-..++|.+-.+  
T Consensus       205 lk~~~-~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y-~~~kvlP~l~~l--  280 (556)
T PF05918_consen  205 LKIYG-GKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNY-MCEKVLPKLSDL--  280 (556)
T ss_dssp             SGG----GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHH-HHHHTCCCTT----
T ss_pred             Ccccc-ccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHH-HHHHhcCChhhC--
Confidence            44421 1122333344555555433      234555444443333    33343222  22222 223456655444  


Q ss_pred             CCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhc----CC--C----hhHHHHHHHHHHHHhcCChHHHHH
Q psy9169         297 SEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLS----SS--R----VNIVKEAAWTISNITAGNSRQIDH  365 (440)
Q Consensus       297 ~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~----~~--~----~~i~~~a~~~L~nl~~~~~~~~~~  365 (440)
                        ....+...+.+++.++..... ...     ..++.+..+|.    ..  .    ....+...+++.+|+...++....
T Consensus       281 --~e~~kl~lLk~lAE~s~~~~~~d~~-----~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~~~~  353 (556)
T PF05918_consen  281 --PEDRKLDLLKLLAELSPFCGAQDAR-----QLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNSLNF  353 (556)
T ss_dssp             -----HHHHHHHHHHHHHTT----THH-----HHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT-THHHH-
T ss_pred             --ChHHHHHHHHHHHHHcCCCCcccHH-----HHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcchhhh
Confidence              446788889999988864321 122     23344444442    11  1    256777889999999887775554


Q ss_pred             H
Q psy9169         366 V  366 (440)
Q Consensus       366 ~  366 (440)
                      +
T Consensus       354 l  354 (556)
T PF05918_consen  354 L  354 (556)
T ss_dssp             -
T ss_pred             H
Confidence            4

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.07  E-value=0.0094  Score=34.61  Aligned_cols=29  Identities=38%  Similarity=0.564  Sum_probs=25.7

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q psy9169         160 AIPKFLQLLSSPHLNLAEQATWALGNIAG  188 (440)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~  188 (440)
                      ++|.+++++.+++++||..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2032|consensus

Probab=96.05  E-value=0.58  Score=45.51  Aligned_cols=145  Identities=10%  Similarity=0.016  Sum_probs=90.3

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHH
Q psy9169         169 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL  248 (440)
Q Consensus       169 ~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  248 (440)
                      .+++..++..|+..|+|.+...|.-.. -.....+..++.-|.++.+.++.-.++.+|..+........-....-++.-.
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~-th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr  346 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVR-THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR  346 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHH-HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence            457789999999999999987443211 1123356777777777777899999999888877554222222233445556


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhccCChhhH-HHHHh--cCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         249 LNQLIHTTDVETLSDICWALSYISDGHNDKI-QAVVD--TGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       249 L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~-~~l~~--~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      +..+..+.+++.+..+...++.|+.-..... ..+.+  .+-..+++-.+.++++.+ ..||+.....+.
T Consensus       347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~  415 (533)
T KOG2032|consen  347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY  415 (533)
T ss_pred             HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence            7778889999999999888888773221111 11111  122334444456666543 456666665554

>KOG2956|consensus

Probab=95.95  E-value=0.67  Score=44.77  Aligned_cols=147  Identities=9%  Similarity=0.101  Sum_probs=99.3

Q ss_pred             ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHH-HHHHhccCChhhHH
Q psy9169         202 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICW-ALSYISDGHNDKIQ  280 (440)
Q Consensus       202 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~-~L~~l~~~~~~~~~  280 (440)
                      ++..+++.|....+.....-|+..|..+|.+. +..-+....-++..+++.-.+.++++...|.. ++.-++...+..  
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q-~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--  406 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ-PARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--  406 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-hHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh--
Confidence            56677788877666888999999999999886 44434444555666666666666555555544 344455555532  


Q ss_pred             HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                            .+..+..++...+......++.++..++..-+...-..+=..+.|.+++...+....+||.|.++|..+..
T Consensus       407 ------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  407 ------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             ------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence                  24455555555666677778888888886543222122224689999999999999999999999998874

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.92  E-value=0.047  Score=38.75  Aligned_cols=56  Identities=18%  Similarity=0.263  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCC
Q psy9169         303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGN  359 (440)
Q Consensus       303 ~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~  359 (440)
                      .+.|+|++|++.+.. .....+.+.++++.++++..+. ...+|-.|.++|+-++...
T Consensus         4 lKaaLWaighIgss~-~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~   60 (73)
T PF14668_consen    4 LKAALWAIGHIGSSP-LGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE   60 (73)
T ss_pred             HHHHHHHHHhHhcCh-HHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence            578999999997744 4666677789999999999854 5789999999999887643

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.79  E-value=0.015  Score=33.70  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=25.8

Q ss_pred             CHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         329 GLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       329 ~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ++|.+.+++.++++.+|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999975

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.72  E-value=0.46  Score=45.90  Aligned_cols=137  Identities=13%  Similarity=0.203  Sum_probs=97.7

Q ss_pred             HHHHHH-hCCHHHHHHhccC---CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-C---CCHHHHHHHHH
Q psy9169         110 IDELIE-AGVVPICVELLDD---ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-S---PHLNLAEQATW  181 (440)
Q Consensus       110 ~~~ii~-~g~i~~Lv~lL~~---~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~---~~~~v~~~a~~  181 (440)
                      ...+++ ..+...|...+.+   -.+.+-..|+.++..+....|..-..+.+.|+++.+++.+. .   ++.++....-.
T Consensus        98 lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~  177 (379)
T PF06025_consen   98 LRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPN  177 (379)
T ss_pred             cccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHH
Confidence            455666 4555666666633   34678889999999999999999999999999999999998 4   44778888888


Q ss_pred             HHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcH------HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHH
Q psy9169         182 ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPL  248 (440)
Q Consensus       182 ~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~  248 (440)
                      +|+.||-++ ...+.+.+.+.++.+.+++.+....      +.....-..+-.|.|+. |..+......++..
T Consensus       178 ~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~-p~Lk~~i~~~ii~~  248 (379)
T PF06025_consen  178 VLSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH-PSLKPDIIDAIIKI  248 (379)
T ss_pred             HHhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC-HHHHHHHHHHHHHH
Confidence            999999884 4557888899999999999865422      23344445566677776 43333333333333

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.68  E-value=0.14  Score=42.95  Aligned_cols=146  Identities=9%  Similarity=0.083  Sum_probs=90.4

Q ss_pred             CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169         117 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD  195 (440)
Q Consensus       117 g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (440)
                      .+++.|+.+| .+.++.+|.+++++|+.|..-+|...+.+...  .+.-.  -...+........... ++...+    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~~~~~~~~~l~~~-~~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENSNDESTDISLPMM-GISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccccccchhhHHhhc-cCCCch----H
Confidence            3577888888 45678999999999999987766544422211  11000  0111111222222111 111111    3


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS  272 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~  272 (440)
                      ...-..++..|+++|++..-..-...++.++.+++... ..........++|.++..++..+...+...++-|+.|.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l-~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL-GLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc-CcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            33334467889999887765566667888888888664 33346778899999999999877788887777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG3036|consensus

Probab=95.66  E-value=1.1  Score=39.65  Aligned_cols=145  Identities=11%  Similarity=0.067  Sum_probs=102.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-----cCCChHHHHHHHHHHHHHhCCC-cHHHHHHHhcCC
Q psy9169          87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-----DDENPNTQFEATWALTNIASGT-SEQTMTVINANA  160 (440)
Q Consensus        87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-----~~~~~~i~~~a~~~L~nla~~~-~~~~~~i~~~g~  160 (440)
                      .+.-...|+..+..++|..  +....+.++.+--.|-.+|     ..+...+|..++.+++.+...+ .+....+...++
T Consensus        92 qsnRVcnaL~LlQcvASHp--dTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI  169 (293)
T KOG3036|consen   92 QSNRVCNALALLQCVASHP--DTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI  169 (293)
T ss_pred             ccchHHHHHHHHHHHhcCc--chHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            3445667777777666544  3567788887766666676     2345678999999999997653 455667889999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-------hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL-------GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~-------~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      ||..++.+..+++.-+..|..++..|..+.....-...       -...+..++..+.+..+..+.++++.+..+|+.++
T Consensus       170 VPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  170 VPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999998899999999999877543311111       11233344444444445888999999999988764

>KOG1243|consensus

Probab=95.66  E-value=0.082  Score=53.35  Aligned_cols=188  Identities=14%  Similarity=0.153  Sum_probs=129.3

Q ss_pred             HHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q psy9169         114 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA  193 (440)
Q Consensus       114 i~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  193 (440)
                      .+.+++|.+++++...+..+|..-+.-+-+...   .....+++.-++|.+..-+.+.++.+|++++.++..|+.--.  
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~--  401 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS--  401 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc--
Confidence            556799999999999999999877776666653   345667888899999999999999999999999999884311  


Q ss_pred             HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH-HHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169         194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL-PLLNQLIHTTDVETLSDICWALSYIS  272 (440)
Q Consensus       194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~-~~L~~ll~~~d~~i~~~a~~~L~~l~  272 (440)
                       ...+....+..+.++-. +....++.+.+-||+.++....+..    ..+++ .....-+.++-...+..+.+++....
T Consensus       402 -~~~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  402 -KRNLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             -hhhhcHHHHHHHHhhCc-cccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence             12333334455544444 4446788888888887776542221    22222 22333445555567777777776666


Q ss_pred             cCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         273 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       273 ~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      ...+   +.-+...++|.++.+.-+++..++..|..++.....
T Consensus       476 ~~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  476 EYFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             cccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence            4433   223456789999999999988899888887765543

>KOG1243|consensus

Probab=95.63  E-value=0.57  Score=47.57  Aligned_cols=256  Identities=13%  Similarity=0.091  Sum_probs=162.6

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCC--hHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN--PNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~--~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      -.++..+...+.+.+..-...|.+.+..    .-+.++...++|.|+..+...+  ..+.. .+..++..... .+    
T Consensus       257 ~~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~lt-pl~k~~k~ld~-~e----  326 (690)
T KOG1243|consen  257 LLFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLT-PLFKLGKDLDE-EE----  326 (690)
T ss_pred             HHHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhh-HHHHhhhhccc-cc----
Confidence            3445555666777666666666554322    2267788889999998883333  22222 22223333222 11    


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                       .+.+++|.|+++++.++..+|-..+.-+-+....   .-..+++..++|.+..-+.+.+ ..++...+.++..|+.--+
T Consensus       327 -yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~  401 (690)
T KOG1243|consen  327 -YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLS  401 (690)
T ss_pred             -cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhc
Confidence             5668999999999999988887766666555533   3456777889999999888776 8899999999988886542


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      ..   ....+.+..+..+-.+++..++....-+++.++.......   .+.-.+.+...-+.++-..-+..+++++....
T Consensus       402 ~~---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  402 KR---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             hh---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence            21   2345666777666666778889888888888886643221   22222334444566666667777777766544


Q ss_pred             cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      ...+..   =+...+++.+.-+.-++++.++..|..++...-
T Consensus       476 ~~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl  514 (690)
T KOG1243|consen  476 EYFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL  514 (690)
T ss_pred             cccchh---hhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence            332211   223356777777777777777776666665443

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.56  E-value=0.63  Score=45.65  Aligned_cols=254  Identities=12%  Similarity=0.071  Sum_probs=146.8

Q ss_pred             HHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC-HH
Q psy9169          96 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LN  174 (440)
Q Consensus        96 ~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~  174 (440)
                      ..|..++......+....+....+..|+.++.++|+.-|.....+|..+.......+..+. ..+...|..++.... ..
T Consensus       112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~~  190 (409)
T PF01603_consen  112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERHN  190 (409)
T ss_dssp             HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--S
T ss_pred             HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCccccc
Confidence            3444444332222233355667788999999999999999999999998866555555443 456667777776543 55


Q ss_pred             HHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh
Q psy9169         175 LAEQATWALGNIAGDGA-RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI  253 (440)
Q Consensus       175 v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll  253 (440)
                      -...++.+++.+..+-+ ..+.... .-....|+.+.....-.........++..++..+ +.    ....++..++..=
T Consensus       191 gI~elLeil~sii~gf~~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~----l~~~~i~~llk~W  264 (409)
T PF01603_consen  191 GIAELLEILGSIINGFAVPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PS----LAEPVIKGLLKHW  264 (409)
T ss_dssp             THHHHHHHHHHHHTT--SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GG----GHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch----hHHHHHHHHHHhC
Confidence            66778888888885422 2222111 1123445555555554556677777777777654 22    1122333333333


Q ss_pred             cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcC---CH
Q psy9169         254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GL  330 (440)
Q Consensus       254 ~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---~l  330 (440)
                      -.++..=...-+.-+..+...-+...-.-+...+...+...+.+++..|.+.|+....|     +.... ++...   ++
T Consensus       265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~~~i~  338 (409)
T PF01603_consen  265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNSRVIL  338 (409)
T ss_dssp             -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhChHHHH
Confidence            34555544555555555554333221222223457778888889999999988876543     22232 33322   67


Q ss_pred             HHHHHHhcCC-----ChhHHHHHHHHHHHHhcCChHH
Q psy9169         331 QKMKKLLSSS-----RVNIVKEAAWTISNITAGNSRQ  362 (440)
Q Consensus       331 ~~L~~ll~~~-----~~~i~~~a~~~L~nl~~~~~~~  362 (440)
                      |.+...+...     +..++..|.-++.-+..-+++-
T Consensus       339 p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~l  375 (409)
T PF01603_consen  339 PIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKL  375 (409)
T ss_dssp             HHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHH
Confidence            7777766431     4689999999999998876654

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.55  E-value=0.072  Score=37.85  Aligned_cols=66  Identities=20%  Similarity=0.360  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q psy9169         134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLG  201 (440)
Q Consensus       134 ~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g  201 (440)
                      ...|+|+++++++. +.....+.+.++++.++++... +...+|-.|.++|+-++.. .+..+.+.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            45799999999874 5556666678999999999986 4589999999999999977 44445544443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.52  E-value=2.8  Score=41.31  Aligned_cols=296  Identities=14%  Similarity=0.128  Sum_probs=167.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCC----cHHHHHHhCCHHHHHHhc-cC----C--ChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          87 NPKMRMIATRSARKMLSKERHP----PIDELIEAGVVPICVELL-DD----E--NPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        87 ~~~~~~~a~~~l~~lls~~~~~----~~~~ii~~g~i~~Lv~lL-~~----~--~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      +.+.-...+.++.+++......    ......+..++|.+.+.. ..    .  ++.+...+..++..+...-+...+.-
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            5566667777777776654322    223344555888888877 21    1  24455555566666655433333322


Q ss_pred             HhcCCHHHHHHhhC----------C------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHH
Q psy9169         156 INANAIPKFLQLLS----------S------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFL  219 (440)
Q Consensus       156 ~~~g~i~~L~~lL~----------~------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~  219 (440)
                      +    +..+..++.          .      .......-...+++.+-.+....    .....+..++.+..+..+...+
T Consensus       136 ~----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~  207 (415)
T PF12460_consen  136 I----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSR  207 (415)
T ss_pred             H----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHH
Confidence            2    223333332          0      11122223334444443332211    1112567777777766667777


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCC----CHHHHHHHHHHHHHhc-cCChhhHHHHHhcCChHHHHH
Q psy9169         220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTT----DVETLSDICWALSYIS-DGHNDKIQAVVDTGVVPRLVE  293 (440)
Q Consensus       220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~----d~~i~~~a~~~L~~l~-~~~~~~~~~l~~~g~~~~Lv~  293 (440)
                      ..++.+++.+...- +.  ......++..+..-+ ...    ......-..|+..-+. ++++.. .     ..+..|+.
T Consensus       208 ~~~~~~la~LvNK~-~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-~-----~~~~~L~~  278 (415)
T PF12460_consen  208 LAALQLLASLVNKW-PD--DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA-T-----ELLDKLLE  278 (415)
T ss_pred             HHHHHHHHHHHcCC-CC--hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH-H-----HHHHHHHH
Confidence            88888888777442 11  113445555555444 222    2344455556555554 333322 2     24778899


Q ss_pred             hccCCChhHHHHHHHHHHHhhcCChH--------HHHHHHHc----CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169         294 LLDSEETTILTAALRTVGNIATGNDH--------QTDCVIQA----GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       294 lL~~~~~~v~~~al~~L~nl~~~~~~--------~~~~l~~~----g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                      +|.+  +.+...|.++++-++...+.        .++.+...    -++|.|++-....+...+..-..+|+++..+-|.
T Consensus       279 lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~  356 (415)
T PF12460_consen  279 LLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK  356 (415)
T ss_pred             HhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH
Confidence            9887  46788888888888776332        22223332    3577777777766666888889999999988665


Q ss_pred             HHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169         362 QIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       362 ~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~  414 (440)
                      ++           +...+.+  .++.+..-+..++.++...+..++..+..+.
T Consensus       357 ~v-----------l~~~l~~--LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  357 SV-----------LLPELPT--LLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HH-----------HHHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            31           1122222  3555666668888899999999998887654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.51  E-value=1.4  Score=40.24  Aligned_cols=223  Identities=13%  Similarity=0.090  Sum_probs=129.3

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          78 EMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      .|=..|.++|+..|..|+..|..++..-+.    ......-+..|+.++  +-.+......++.++..+.....-.... 
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~----~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-   77 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPP----DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-   77 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCH----hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence            345678899999999999999999876541    223333467777777  3345555555566666665332211111 


Q ss_pred             HhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         156 INANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       156 ~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                       ...++..+.+...-+  ....|..+...|..+..+.   +..+.  ..+.+..+++.+....++.-+-.+...+..+..
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~  153 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ  153 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence             112223333322222  2567788888888887542   22232  335778888888877778888888777777776


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhh----cC--CCH-H-HHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLI----HT--TDV-E-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTIL  303 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll----~~--~d~-~-i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~  303 (440)
                      .-+.   ......++..+.-..    ..  +|+ . ...+...+|.......+..     ..-++|.|++-|.++.+.++
T Consensus       154 ~~~~---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  154 EFDI---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             hccc---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence            6531   111222333222221    11  232 1 2233333333333333322     23458999999999999999


Q ss_pred             HHHHHHHHHhhcCC
Q psy9169         304 TAALRTVGNIATGN  317 (440)
Q Consensus       304 ~~al~~L~nl~~~~  317 (440)
                      ..++.+|...+...
T Consensus       226 ~D~L~tL~~c~~~y  239 (262)
T PF14500_consen  226 LDSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999876544

>KOG1566|consensus

Probab=95.49  E-value=0.85  Score=41.84  Aligned_cols=202  Identities=13%  Similarity=0.103  Sum_probs=131.8

Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHH-hcCChHHHHhhhCCCC-cHHHHHHHHHHH
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR----ARDLLL-GLGTMPQILALVQPNT-PTTFLRNIVWAI  226 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~r~~i~-~~g~i~~L~~ll~~~~-~~~~~~~a~~~L  226 (440)
                      ..+.++|.+..|+..+..-+-+-+..++.+..|+-+....    ..+++. ...++..|+.-   .. .+++.-++...+
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence            3456789999999999988877777788888877633222    223332 22233333333   22 144444444444


Q ss_pred             HhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCC----hHHHHHhccCCChhH
Q psy9169         227 SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGV----VPRLVELLDSEETTI  302 (440)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~----~~~Lv~lL~~~~~~v  302 (440)
                      ....+.. .-........-+......+..+.-++..+|..+...+.......+..++..+.    .+.--.++.+.+.-.
T Consensus       150 rEcirhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt  228 (342)
T KOG1566|consen  150 RECIRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT  228 (342)
T ss_pred             HHHHhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence            4433332 22222233444555566667777789999999998887655544455544432    333666778888889


Q ss_pred             HHHHHHHHHHhhcCCh---HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         303 LTAALRTVGNIATGND---HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       303 ~~~al~~L~nl~~~~~---~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +..++..+|.+..+.+   ..++++-+..-+..++.+|..+...+|-+|..+..-..+.
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn  287 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN  287 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence            9999999999987544   3455565556799999999999999999999988887775

>KOG1020|consensus

Probab=95.48  E-value=0.46  Score=52.17  Aligned_cols=171  Identities=11%  Similarity=0.086  Sum_probs=114.0

Q ss_pred             HHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC
Q psy9169         219 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE  298 (440)
Q Consensus       219 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~  298 (440)
                      ..++.|....++...+-   ......++..++..+..+...++..|+.+|+.+...++..   +....+-..+-.-+.+.
T Consensus       794 ~~~a~li~~~la~~r~f---~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Ds  867 (1692)
T KOG1020|consen  794 DDDAKLIVFYLAHARSF---SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDS  867 (1692)
T ss_pred             chhHHHHHHHHHhhhHH---HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccc
Confidence            34566666666655411   1123456777778888888999999999999999887733   22223334444445667


Q ss_pred             ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHH
Q psy9169         299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALL  378 (440)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~  378 (440)
                      ...|+.+|+..+|..+...++.....     ++.+..-+.+..-.||+.+...+.-||...++.-...      +..+.+
T Consensus       868 sasVREAaldLvGrfvl~~~e~~~qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~------~~cakm  936 (1692)
T KOG1020|consen  868 SASVREAALDLVGRFVLSIPELIFQY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV------DMCAKM  936 (1692)
T ss_pred             hhHHHHHHHHHHhhhhhccHHHHHHH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH------HHHHHH
Confidence            78999999999999988877655533     4456665556667899999999999998776531100      011111


Q ss_pred             HHHcCcHHHHHHHhcCCcHH-HHHHHHHHHHhhCCCCccc
Q psy9169         379 VEESGGLEKLEALQHHENET-VYQKCYKIISMAFNDSAEN  417 (440)
Q Consensus       379 l~~~g~l~~l~~L~~~~~~~-v~~~a~~il~~~~~~~~~~  417 (440)
                      |          .=. ++.++ |++.+.....++|-.+..+
T Consensus       937 l----------rRv-~DEEg~I~kLv~etf~klWF~p~~~  965 (1692)
T KOG1020|consen  937 L----------RRV-NDEEGNIKKLVRETFLKLWFTPVPE  965 (1692)
T ss_pred             H----------HHh-ccchhHHHHHHHHHHHHHhccCCCc
Confidence            1          111 33344 9999999999988766544

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.26  E-value=0.54  Score=44.03  Aligned_cols=172  Identities=13%  Similarity=0.071  Sum_probs=115.0

Q ss_pred             CCHHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169         159 NAIPKFL-QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP  237 (440)
Q Consensus       159 g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  237 (440)
                      +.+..|+ ..+++.++.+|+.++.+||-.|--+....     ...++.+...+..+ +..++..++.++..+....+...
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence            3444444 67788889999999999999995543321     22467777888555 58999999999998775432111


Q ss_pred             -C-------HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC----ChhHHHH
Q psy9169         238 -D-------FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE----ETTILTA  305 (440)
Q Consensus       238 -~-------~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~----~~~v~~~  305 (440)
                       .       ......++..+...+.+.+++++..++..++.|.-...-..    ...++..|+-+.-++    +..++.-
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence             1       11235678888899999999999999999999875433221    123455665555443    3455555


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC
Q psy9169         306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR  341 (440)
Q Consensus       306 al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~  341 (440)
                      -..++-..+..++.+.. .+...+++.+..+...+.
T Consensus       176 L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~  210 (298)
T PF12719_consen  176 LSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNAPD  210 (298)
T ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence            55666777777776654 555568888888777643

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.25  E-value=0.073  Score=44.55  Aligned_cols=146  Identities=16%  Similarity=0.170  Sum_probs=96.9

Q ss_pred             hHHHHhhhCC-CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHH
Q psy9169         203 MPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA  281 (440)
Q Consensus       203 i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~  281 (440)
                      ++.++..+.. ..+.+++..++-++..+-..    ........+-..+..++...+.+-...++.++..+-...++....
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            3444444443 44467888888888887411    111122334445555565555567788888888888888877666


Q ss_pred             HH-hcCChHHHHHhcc--CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChh-HHHHHHHHHHH
Q psy9169         282 VV-DTGVVPRLVELLD--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVN-IVKEAAWTISN  354 (440)
Q Consensus       282 l~-~~g~~~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~-i~~~a~~~L~n  354 (440)
                      ++ ..|+++.++.++.  ..+..++..++.+|..-| .+...+. .+...++++|..++.. ++.. +|..|+-+|+-
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            55 5699999999998  677888889999887644 4444444 4445689999999964 4455 78888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.15  E-value=1.2  Score=39.96  Aligned_cols=186  Identities=13%  Similarity=0.084  Sum_probs=114.5

Q ss_pred             CHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHhhh-------CCCC-cH---HHHHHHHHHHHhhhhCCCCCCCH
Q psy9169         172 HLNLAEQATWALGNIAGDGARARDLLL-GLGTMPQILALV-------QPNT-PT---TFLRNIVWAISNLCRNKNPAPDF  239 (440)
Q Consensus       172 ~~~v~~~a~~~L~nl~~~~~~~r~~i~-~~g~i~~L~~ll-------~~~~-~~---~~~~~a~~~L~~l~~~~~~~~~~  239 (440)
                      +++.|+.|+.-|+.--...+...-.+. ..|.+..|++=+       .... ..   .-+.+++..+-.++.++ .....
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshp-etr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHP-ETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-T-TTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcCh-HHHHH
Confidence            467788888777776655555544444 345555554322       2211 12   22344445555677765 33333


Q ss_pred             HHHhhHHHHHHHhhcCCC-----HHHHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         240 EKIKICLPLLNQLIHTTD-----VETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       240 ~~~~~~~~~L~~ll~~~d-----~~i~~~a~~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                      .....+.-.|..+|+..+     +.++..++++++.+... +.+.+..+++.+++|..+..+..++.--+..|..++..|
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344555555666665432     57889999999999964 457788899999999999999998888888999999988


Q ss_pred             hcCCh---------HHHHHHHHcCCHHHHH-HHhcCCChhHHHHHHHHHHHHhcCCh
Q psy9169         314 ATGND---------HQTDCVIQAGGLQKMK-KLLSSSRVNIVKEAAWTISNITAGNS  360 (440)
Q Consensus       314 ~~~~~---------~~~~~l~~~g~l~~L~-~ll~~~~~~i~~~a~~~L~nl~~~~~  360 (440)
                      ...+.         +....+.  .++..++ .+...+++.+-+.+.++-..++.+..
T Consensus       167 L~dd~GL~yiC~t~eRf~av~--~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  167 LLDDVGLNYICQTAERFFAVA--MVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HcchhHHHHHhcCHHHHHHHH--HHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            65432         2111111  1333333 45566788999999999999987653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PRK14707 hypothetical protein; Provisional

Probab=95.07  E-value=5.5  Score=45.94  Aligned_cols=266  Identities=12%  Similarity=0.041  Sum_probs=147.1

Q ss_pred             cCCCh-HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q psy9169         127 DDENP-NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ  205 (440)
Q Consensus       127 ~~~~~-~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~  205 (440)
                      +-++. .....+.++-..++ ..+..++.+-..++-..|-.+-+-++..+...|...|..=-.+.+..+..+- .-.+..
T Consensus       258 Kwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~  335 (2710)
T PRK14707        258 KWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALN-ARGLST  335 (2710)
T ss_pred             cCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHH
Confidence            43443 44444444444454 3345444444444444444444557766766666666554445566543332 233444


Q ss_pred             HHhhhCCCCcHHHHHHHHHHH-HhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169         206 ILALVQPNTPTTFLRNIVWAI-SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD  284 (440)
Q Consensus       206 L~~ll~~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~  284 (440)
                      .++.|....+..+-+.+..+| ..++.+.. ..+-....++-..|..+-+-++..+...+...|..=..++.+....+--
T Consensus       336 ~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~-l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~  414 (2710)
T PRK14707        336 ALNALSKWPDNPVCAAAVSALAERLVADPE-LRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP  414 (2710)
T ss_pred             HHHHhhcCCCchhHHHHHHHHHHHhccCHh-hhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch
Confidence            555555443334444444444 45665542 2222223344444444445567677777777666555566666555444


Q ss_pred             cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHH
Q psy9169         285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID  364 (440)
Q Consensus       285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~  364 (440)
                      .|+-..|-.+-+=++..++..+...|.--+..+.+..+.+--.++...|-.+-+-++..+...|+-.|.-=.....+.  
T Consensus       415 Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l--  492 (2710)
T PRK14707        415 QGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRL--  492 (2710)
T ss_pred             hhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHH--
Confidence            455555555556678888888888888777777766665544556666666667788888888777777655544433  


Q ss_pred             HHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy9169         365 HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS  408 (440)
Q Consensus       365 ~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~  408 (440)
                                 ++.+.-.+....|..|-..++...+..|...|.
T Consensus       493 -----------~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA  525 (2710)
T PRK14707        493 -----------RKALKPQEVVIALHSLSKWPDTPICAEAASALA  525 (2710)
T ss_pred             -----------HhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence                       333333444555666666666555555544443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.04  E-value=0.14  Score=51.62  Aligned_cols=141  Identities=13%  Similarity=0.124  Sum_probs=99.9

Q ss_pred             hHHHHHHHhhcC----CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCCh
Q psy9169         244 ICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGND  318 (440)
Q Consensus       244 ~~~~~L~~ll~~----~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~  318 (440)
                      .+-|.+.+...+    +|++++..|.-+|..+.+-+.+...     .-+|.|+..|. +++|.++..|.-.+|.++....
T Consensus       892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN  966 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN  966 (1128)
T ss_pred             hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence            344555566544    7899999999999888765543322     23899999996 8999999999999998876544


Q ss_pred             HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHH
Q psy9169         319 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENET  398 (440)
Q Consensus       319 ~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~  398 (440)
                      ..++..     -..|.+-|.+.+..+++.+..++.++.-..                  .+.--|-+..+..++..++.+
T Consensus       967 ~~~de~-----t~yLyrrL~De~~~V~rtclmti~fLilag------------------q~KVKGqlg~ma~~L~deda~ 1023 (1128)
T COG5098         967 TTADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAG------------------QLKVKGQLGKMALLLTDEDAE 1023 (1128)
T ss_pred             hhhHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHcc------------------ceeeccchhhhHhhccCCcch
Confidence            333322     356778888888999999999999986322                  122235566667777777888


Q ss_pred             HHHHHHHHHHhhCC
Q psy9169         399 VYQKCYKIISMAFN  412 (440)
Q Consensus       399 v~~~a~~il~~~~~  412 (440)
                      |..+|.-....+..
T Consensus      1024 Isdmar~fft~~a~ 1037 (1128)
T COG5098        1024 ISDMARHFFTQIAK 1037 (1128)
T ss_pred             HHHHHHHHHHHHHh
Confidence            87777666655543

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.00  E-value=1.4  Score=43.16  Aligned_cols=234  Identities=12%  Similarity=0.108  Sum_probs=134.2

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      -+..|+.++.|+|+..|......+.++...-.  .....+...+...|.+++ ....+....+.+.+++.+..|-..--.
T Consensus       134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~--~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk  211 (409)
T PF01603_consen  134 FIKKLLELFDSPDPRERDYLKTILHRIYGKFP--NLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK  211 (409)
T ss_dssp             HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-T--TTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence            46778888999999999999999988876443  356777777888899999 677778888999999999876331111


Q ss_pred             HHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      .-...-....|+.|.+.+. .....+...++..+...++..-..+     +..|++.=-..+ ..-..-.+.-+..+...
T Consensus       212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~-s~Kev~FL~el~~il~~  285 (409)
T PF01603_consen  212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTN-SQKEVLFLNELEEILEV  285 (409)
T ss_dssp             HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS--HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCC-chhHHHHHHHHHHHHHh
Confidence            1011112344455555555 3344555666666665445442222     222333222222 22223333344444443


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhcc-----CCChhHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLD-----SEETTILT  304 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~-----~~~~~v~~  304 (440)
                      -++..-......++..+..++.+.+..|...|+..+.+     + ..-.++..   .++|.+..-|.     |-+..|+.
T Consensus       286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~-~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~  359 (409)
T PF01603_consen  286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----E-YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRN  359 (409)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----H-HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----H-HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            31111112335677788888899998888888765522     1 11112211   24666666653     33678999


Q ss_pred             HHHHHHHHhhcCChHHHH
Q psy9169         305 AALRTVGNIATGNDHQTD  322 (440)
Q Consensus       305 ~al~~L~nl~~~~~~~~~  322 (440)
                      .|..++.-+...++...+
T Consensus       360 ~a~~vl~~l~~~d~~lf~  377 (409)
T PF01603_consen  360 LAQNVLKILMEMDPKLFD  377 (409)
T ss_dssp             HHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHhCHHHHH
Confidence            999999988877765433

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.94  E-value=0.093  Score=39.33  Aligned_cols=85  Identities=16%  Similarity=0.270  Sum_probs=65.7

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .+...+..|+++.+.+|-.|+..|++++....   ....-..+++..+...|+++++-+-..|+.+|..++...++    
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----
Confidence            46778889999999999999999999987654   12222356788888999999999999999999999976554    


Q ss_pred             HHhcCCHHHHHHhhCC
Q psy9169         155 VINANAIPKFLQLLSS  170 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~  170 (440)
                          .+++.|+....+
T Consensus        77 ----~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 ----EVLPILLDEYAD   88 (92)
T ss_pred             ----HHHHHHHHHHhC
Confidence                345666555443

>KOG1967|consensus

Probab=94.80  E-value=0.59  Score=48.81  Aligned_cols=186  Identities=16%  Similarity=0.156  Sum_probs=125.8

Q ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH-------------HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9169         119 VPICVELLDDENPNTQFEATWALTNIASGTSEQ-------------TMTVINANAIPKFLQLLSSPHLNLAEQATWALGN  185 (440)
Q Consensus       119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~-------------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  185 (440)
                      ...|+++|+.  |++-..++.++.-+..+++..             ++.+ =..++|.|+..........+..-+.+|.+
T Consensus       817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRf-F~~ivP~l~~~~~t~~~~~K~~yl~~Lsh  893 (1030)
T KOG1967|consen  817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRF-FCDIVPILVSKFETAPGSQKHNYLEALSH  893 (1030)
T ss_pred             HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHH-HHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence            4456666643  444445555565555554322             2222 24689999999986666677777888888


Q ss_pred             hhCCCchhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCC---HHH
Q psy9169         186 IAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD---VET  260 (440)
Q Consensus       186 l~~~~~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d---~~i  260 (440)
                      +..+-|.  ..+.  -...+|.|++.|.-.+ ..++..+..++.-+.... +.........++|.+..+=.++|   ..+
T Consensus       894 Vl~~vP~--~vllp~~~~LlPLLLq~Ls~~D-~~v~vstl~~i~~~l~~~-~tL~t~~~~Tlvp~lLsls~~~~n~~~~V  969 (1030)
T KOG1967|consen  894 VLTNVPK--QVLLPQFPMLLPLLLQALSMPD-VIVRVSTLRTIPMLLTES-ETLQTEHLSTLVPYLLSLSSDNDNNMMVV  969 (1030)
T ss_pred             HHhcCCH--HhhccchhhHHHHHHHhcCCCc-cchhhhHhhhhhHHHHhc-cccchHHHhHHHHHHHhcCCCCCcchhHH
Confidence            8876554  3333  2345677777776555 677778888887766554 44455566788898888776655   578


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169         261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG  311 (440)
Q Consensus       261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~  311 (440)
                      +..|+.++..|+..-+...-.-....++..|.+.|.++.--||..|.++=+
T Consensus       970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            999999999999844433233344567899999999998889999988643

>KOG2025|consensus

Probab=94.58  E-value=2.3  Score=43.38  Aligned_cols=128  Identities=13%  Similarity=0.121  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc
Q psy9169         217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD  296 (440)
Q Consensus       217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~  296 (440)
                      .+++-+...+..+-..+   .....+.+++..++....+.+..++-.+|..|..+.....+. ...+-.++...+..-+.
T Consensus        61 RIl~fla~fv~sl~q~d---~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~  136 (892)
T KOG2025|consen   61 RILSFLARFVESLPQLD---KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLK  136 (892)
T ss_pred             HHHHHHHHHHHhhhccC---chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHh
Confidence            34444444444443332   344466788888888888899999999999999999754433 33333566777888888


Q ss_pred             CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHH
Q psy9169         297 SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTIS  353 (440)
Q Consensus       297 ~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~L~  353 (440)
                      +..+.|+..|+.+|+.+-....+.     +..+...+..++++ +++.+|+.|...|+
T Consensus       137 Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  137 DREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence            889999999999999986321111     12356667777775 56788887644433

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.63  Score=46.05  Aligned_cols=151  Identities=17%  Similarity=0.160  Sum_probs=99.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169          79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN  157 (440)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~  157 (440)
                      +-+++.+.|+..+..++..+.--..+..        +.|++..|++.- .+.+.+++..|+.+|+-+|..++        
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------  584 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------  584 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc--------
Confidence            4455667778888887777765444444        237888888884 88899999999999999988754        


Q ss_pred             cCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169         158 ANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA  236 (440)
Q Consensus       158 ~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  236 (440)
                       ..++..+++|.. .+.-||.-.+.+||-.|...-..       -++..|-.++.+.. .-++..|+-+++-+....++.
T Consensus       585 -~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D~~-dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         585 -DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYDTN-DFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             -chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhCcH-HHHHHHHHHHHHHHHhhcCcc
Confidence             456667777765 45889988888998877543211       12444445554444 566777777777776554333


Q ss_pred             CCHHHHhhHHHHHHHhhcC
Q psy9169         237 PDFEKIKICLPLLNQLIHT  255 (440)
Q Consensus       237 ~~~~~~~~~~~~L~~ll~~  255 (440)
                      .. ..+.++...+..++..
T Consensus       656 Ln-p~v~~I~k~f~~vI~~  673 (926)
T COG5116         656 LN-PNVKRIIKKFNRVIVD  673 (926)
T ss_pred             cC-hhHHHHHHHHHHHHhh
Confidence            22 2345566666666644

>KOG2137|consensus

Probab=94.48  E-value=1.1  Score=45.63  Aligned_cols=236  Identities=11%  Similarity=0.074  Sum_probs=135.2

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHH
Q psy9169          86 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL  165 (440)
Q Consensus        86 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~  165 (440)
                      .|+..+..-...|.+++..-+    ..+....++|.|++.|.+  ...+-..+-.+..|+.+.+   ........+|.|.
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp----~rv~~~kiLP~L~~el~n--~~~vp~~LP~v~~i~~~~s---~~~~~~~~~p~l~  355 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFP----ARVLFQKILPTLVAELVN--TKMVPIVLPLVLLIAEGLS---QNEFGPKMLPALK  355 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCC----HHHHHHhhhhHHHHHhcc--ccccccccchhhhhhhccc---hhhhhhhhhHHHH
Confidence            456666666667777764332    455566788888888732  1222222222333333211   1222345667777


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169         166 QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC  245 (440)
Q Consensus       166 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  245 (440)
                      ..++.++.  .+..+.++-|+-.--......-+...++|.|..-++..+ ..++..++..+..++..-+   -......+
T Consensus       356 pi~~~~~~--~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~-~~iQ~~~L~~lptv~e~iD---~~~vk~~i  429 (700)
T KOG2137|consen  356 PIYSASDP--KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSD-VQIQELALQILPTVAESID---VPFVKQAI  429 (700)
T ss_pred             HHhccCCc--ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcc-hhhHHHHHHhhhHHHHhcc---HHHHHHHH
Confidence            77764321  111122222221000011122233456777777776666 8889999998888886642   22344667


Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHH
Q psy9169         246 LPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV  324 (440)
Q Consensus       246 ~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l  324 (440)
                      +|.|..+. .+++..++.+++.++..+...-+    ...-...+..+.+.....++.+....+++..++....... +.+
T Consensus       430 lP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD----~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev  504 (700)
T KOG2137|consen  430 LPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD----KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEV  504 (700)
T ss_pred             HHHhhcchhcccchHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eee
Confidence            88887664 46788999999999999983221    1111123445555556678888888888888877654433 345


Q ss_pred             HHcCCHHHHHHHhcCCC
Q psy9169         325 IQAGGLQKMKKLLSSSR  341 (440)
Q Consensus       325 ~~~g~l~~L~~ll~~~~  341 (440)
                      +-..++|.++.+...+.
T Consensus       505 ~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  505 MAENVLPLLIPLSVAPS  521 (700)
T ss_pred             ehhhhhhhhhhhhhccc
Confidence            55678888888887664

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.45  E-value=5.1  Score=38.81  Aligned_cols=264  Identities=14%  Similarity=0.148  Sum_probs=141.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHHhCCHHHHHHhc----cC-------CChHHHHHHHHHHHHHhCCCcH
Q psy9169          83 MKSSNPKMRMIATRSARKMLSKERHPP-IDELIEAGVVPICVELL----DD-------ENPNTQFEATWALTNIASGTSE  150 (440)
Q Consensus        83 L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~ii~~g~i~~Lv~lL----~~-------~~~~i~~~a~~~L~nla~~~~~  150 (440)
                      |.+.+...+..|-..|.+.+....+.+ ...+.+  -++.|++++    .+       .+..+..+|+.+|+.+..+ ++
T Consensus         2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~-~~   78 (372)
T PF12231_consen    2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYH-PE   78 (372)
T ss_pred             CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHcc-HH
Confidence            345667778888877877776554333 333322  245555544    12       3567888999999998854 44


Q ss_pred             HHHHHHhcC---CHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---C-CCcHHHHHH
Q psy9169         151 QTMTVINAN---AIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---P-NTPTTFLRN  221 (440)
Q Consensus       151 ~~~~i~~~g---~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~-~~~~~~~~~  221 (440)
                      ....+-+.-   .+...+..+.+++  ..+...++|+|..=--.     ..++....+..++..+.   + -.+..+...
T Consensus        79 i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~e  153 (372)
T PF12231_consen   79 IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISE  153 (372)
T ss_pred             HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHH
Confidence            333332221   3455566665544  56777888888753322     22333344444544443   2 234678888


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc--cCCh-hhH---HHHHhc----C-----
Q psy9169         222 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS--DGHN-DKI---QAVVDT----G-----  286 (440)
Q Consensus       222 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~--~~~~-~~~---~~l~~~----g-----  286 (440)
                      .+.++.+|.... |..-......-+|.++..+-+....++..|...+..+.  -+.. ...   ....+.    +     
T Consensus       154 rL~i~~~ll~q~-p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~  232 (372)
T PF12231_consen  154 RLNIYKRLLSQF-PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQL  232 (372)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHH
Confidence            888888888765 32222233446788777776666666666555444433  1111 111   111222    2     


Q ss_pred             ChHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         287 VVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      +.+.|..++.+.+.....+-+|..--+..+.+. ..-..+ ...+...-..+.++++.+|.+|..+=..++
T Consensus       233 ~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A~~aW~~li  302 (372)
T PF12231_consen  233 YCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQAFKAWRRLI  302 (372)
T ss_pred             HHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            334466666663333333334433322223321 001111 134555566777888888888755544443

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=94.26  E-value=9.6  Score=44.29  Aligned_cols=274  Identities=10%  Similarity=0.025  Sum_probs=148.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCC--CcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCH
Q psy9169          85 SSNPKMRMIATRSARKMLSKERH--PPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAI  161 (440)
Q Consensus        85 s~~~~~~~~a~~~l~~lls~~~~--~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i  161 (440)
                      +.+..+...|+..|+.+...--.  +....-.+...+.+|..++ .+.+.+++...+.++.++.....    .-+..| =
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~----~nIkSG-W 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV----NNVKSG-W 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH----hhhhcC-c
Confidence            44677888888888877543211  1111223456788888888 77788999999999999874322    222333 3


Q ss_pred             HHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCC----hHHHHhhhCCCCcHHHHHHHHHHHHhh--
Q psy9169         162 PKFLQLL----SSPHLNLAEQATWALGNIAGDGARARDLLLG--LGT----MPQILALVQPNTPTTFLRNIVWAISNL--  229 (440)
Q Consensus       162 ~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~----i~~L~~ll~~~~~~~~~~~a~~~L~~l--  229 (440)
                      +.+..++    .+.++.+.+.|..++..|+.+.-   ..+..  .+.    |..|..+.....+..+--.++..|+++  
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence            3333333    35568888888888887774411   10100  122    333333333322222222333333322  


Q ss_pred             --hhCCC------------------------C----CCCH---HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC-
Q psy9169         230 --CRNKN------------------------P----APDF---EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH-  275 (440)
Q Consensus       230 --~~~~~------------------------~----~~~~---~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~-  275 (440)
                        ..+..                        .    ....   ...-.++..|..+..+.+++|+..|+.+|..+.... 
T Consensus      1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076       1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred             HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence              11100                        0    0000   111233334445566788999999999998776332 


Q ss_pred             ----hhhHHHHHhcCChHHHHHhccCC------------------C--------hhHHHHHHHHHHHhhcCChHHHHHHH
Q psy9169         276 ----NDKIQAVVDTGVVPRLVELLDSE------------------E--------TTILTAALRTVGNIATGNDHQTDCVI  325 (440)
Q Consensus       276 ----~~~~~~l~~~g~~~~Lv~lL~~~------------------~--------~~v~~~al~~L~nl~~~~~~~~~~l~  325 (440)
                          ++....+.. +++-+++..+++.                  +        .+....|++.+.++.+..-+....++
T Consensus      1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076       1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred             ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                223333332 4566665554321                  0        12333455555555444333333343


Q ss_pred             HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-----ChHHHHHHhh
Q psy9169         326 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-----NSRQIDHVIQ  368 (440)
Q Consensus       326 ~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-----~~~~~~~~i~  368 (440)
                      + +++..|..++..++..+.+.++-+|.++...     +++++..+++
T Consensus      1459 ~-~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~ 1505 (1780)
T PLN03076       1459 K-KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVL 1505 (1780)
T ss_pred             H-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence            3 5666777777778888999999999988742     5666666654

>KOG2137|consensus

Probab=94.23  E-value=0.4  Score=48.75  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=101.0

Q ss_pred             hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169         157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA  236 (440)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  236 (440)
                      ...++|.|..-+++.+..+++.++..+..++..-+   -..+..-++|.|..+.....+..++.+++-|+..+...-   
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l---  460 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL---  460 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---
Confidence            44678888888889999999999999999884322   234455678888888767777899999999999988432   


Q ss_pred             CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCCh
Q psy9169         237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET  300 (440)
Q Consensus       237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~  300 (440)
                       +.....+.++.+....+..|+.+......+...+....... ..++...++|.++.+...+.-
T Consensus       461 -D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L  522 (700)
T KOG2137|consen  461 -DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL  522 (700)
T ss_pred             -HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence             22333455666667777889999999888888887655543 455667889999988876653

>PRK14707 hypothetical protein; Provisional

Probab=94.19  E-value=13  Score=43.09  Aligned_cols=280  Identities=14%  Similarity=0.095  Sum_probs=142.7

Q ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-c-CCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          76 VPEMIEGMK--SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-D-DENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        76 i~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~-~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      +..+++.++  .++..-+..+ ..|...++.+. .....+-..| |-.++.-+ + .+++..+..+...-..++.. +..
T Consensus       165 ~~lllNafSKw~~~~~c~~aa-~~la~~~~~~d-~~~~~~~~q~-ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l  240 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVA-PRFAALVASDD-RLRSAMDAQG-VATVLNALCKWPDTPDCGNAVSALAERLADE-SRL  240 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHH-HHHHHHhcCCh-hhhcccchHH-HHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHH
Confidence            445555554  3334444333 33333443332 2233332233 44444444 3 44555555444444444543 444


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH-hh
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS-NL  229 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~-nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~-~l  229 (440)
                      +..+-..|+-..|-.+-+=++..+..+++.+|. .++.+ +..+..+-.. .+...++-|....+..+-+.++..|. .|
T Consensus       241 ~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl  318 (2710)
T PRK14707        241 RNELKPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL  318 (2710)
T ss_pred             HHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence            444444444444444444466555555555554 44433 5554443322 23334444444443555554444444 34


Q ss_pred             hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169         230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT  309 (440)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~  309 (440)
                      .... .........++-..|..+-+-.|..+...+..+|..=...+++..+.+--.|+-..|-.+-+=++..++..|...
T Consensus       319 ~~d~-~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~  397 (2710)
T PRK14707        319 ADDP-ELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA  397 (2710)
T ss_pred             hccH-hhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence            4432 111111112222333333344565555555555544444455454544434544444444455777788888888


Q ss_pred             HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169         310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ  362 (440)
Q Consensus       310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  362 (440)
                      |..=..++++..+.+--.|+-..|-.+-+-++..+...++.+|.--.+...+.
T Consensus       398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l  450 (2710)
T PRK14707        398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTEL  450 (2710)
T ss_pred             HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHH
Confidence            87777778777776655666666666777788888888888888776665543

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.15  E-value=8.1  Score=39.94  Aligned_cols=235  Identities=14%  Similarity=0.114  Sum_probs=131.5

Q ss_pred             hCCHHHHHHhc-cC-------CChHHHHHHHHHHHHHhC--CCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9169         116 AGVVPICVELL-DD-------ENPNTQFEATWALTNIAS--GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN  185 (440)
Q Consensus       116 ~g~i~~Lv~lL-~~-------~~~~i~~~a~~~L~nla~--~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  185 (440)
                      .|+++.++..| ++       +++.-.+-|++.+.++.+  ........+++.-+++.++..++++..-++..||..++.
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            48899999998 21       122334557777777765  223334455666678888888899888899999999999


Q ss_pred             hhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHh---hHHHHHHHhhcCCCHHHHH
Q psy9169         186 IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK---ICLPLLNQLIHTTDVETLS  262 (440)
Q Consensus       186 l~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~ll~~~d~~i~~  262 (440)
                      +..+   .++..+-..+.+...+.+.+.. ..+...|+-++.-+..+..  .......   +.++.|..+-+.-+.++..
T Consensus       487 ~eeD---fkd~~ill~aye~t~ncl~nn~-lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS  560 (970)
T COG5656         487 IEED---FKDNGILLEAYENTHNCLKNNH-LPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLS  560 (970)
T ss_pred             HHHh---cccchHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHH
Confidence            9533   4455555566777778888755 7788888889888887752  2222222   3333333333444445555


Q ss_pred             HHHHHH-HHhccCChhhHHHHHh---cCChHHHHHhccCCC------hhHHHHHHHHHHHhhc------CChHHHHHHHH
Q psy9169         263 DICWAL-SYISDGHNDKIQAVVD---TGVVPRLVELLDSEE------TTILTAALRTVGNIAT------GNDHQTDCVIQ  326 (440)
Q Consensus       263 ~a~~~L-~~l~~~~~~~~~~l~~---~g~~~~Lv~lL~~~~------~~v~~~al~~L~nl~~------~~~~~~~~l~~  326 (440)
                      .+...+ .+.+..-......+..   ...+.....++..++      .+-+..|.++|..+.+      ..+...+. +.
T Consensus       561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~-le  639 (970)
T COG5656         561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY-LE  639 (970)
T ss_pred             HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH-HH
Confidence            555443 2333222111111111   011222233333321      1234445555544432      22222222 23


Q ss_pred             cCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         327 AGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       327 ~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ....|.+--++.+...+.-.+|+-.|-+.+-
T Consensus       640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf  670 (970)
T COG5656         640 VSLYPVISFILKNEISDFYQEALDILDGYTF  670 (970)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhH
Confidence            3456666666666666777777777766653

>KOG2032|consensus

Probab=94.12  E-value=6.3  Score=38.63  Aligned_cols=261  Identities=13%  Similarity=0.086  Sum_probs=135.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcH--HH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSE--QT  152 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~--~~  152 (440)
                      +..+.....+++...+-.|+..|.+.++.-+  ....-...-.+..++.-| ...+.+++.+++.+|+.+...-..  ..
T Consensus       260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P--~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~  337 (533)
T KOG2032|consen  260 LLSLANKATDPSAKSRGMACRGLGNTASGAP--DKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE  337 (533)
T ss_pred             HHHHHHhccCchhHHHHHHHHHHHHHhccCc--HHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence            3344445567778899999999999988733  111112233455555555 667789999999999988743111  11


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHH--hcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNL  229 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~--~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l  229 (440)
                      ..+  .++.-.+..+..+.+++++..+...++.++... ...++.+.  ..+...+++-.|.+.. + ....||......
T Consensus       338 ~~~--l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~-p-~va~ACr~~~~~  413 (533)
T KOG2032|consen  338 SYL--LNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPN-P-YVARACRSELRT  413 (533)
T ss_pred             hhc--hhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCC-h-HHHHHHHHHHHh
Confidence            111  134445677778888999999998888887221 11222222  1223334444444444 3 334455554444


Q ss_pred             hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHH---HHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHH
Q psy9169         230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSD---ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA  306 (440)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~---a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~a  306 (440)
                      |.-   .........+++...    ..+.. ...   .-|+ ..+....++....+     ......++++.-+.++..|
T Consensus       414 c~p---~l~rke~~~~~q~~l----d~~~~-~~q~Fyn~~c-~~L~~i~~d~l~~~-----~t~~~~~f~sswe~vr~aa  479 (533)
T KOG2032|consen  414 CYP---NLVRKELYHLFQESL----DTDMA-RFQAFYNQWC-IQLNHIHPDILMLL-----LTEDQHIFSSSWEQVREAA  479 (533)
T ss_pred             cCc---hhHHHHHHHHHhhhh----HHhHH-HHHHHHHHHH-HHHhhhCHHHHHHH-----HHhchhheecchHHHHHHH
Confidence            422   111222233333222    11110 111   1111 11222222222221     1222233344445677777


Q ss_pred             HHHHHHhhcCChHHHHHHHH-cCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         307 LRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       307 l~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      ...-++..-+-........+ ..+...+..+...+-+++++.|..++.-+.
T Consensus       480 vl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  480 VLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            77777766543333222222 234455666677778899988888876654

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.12  E-value=0.34  Score=40.51  Aligned_cols=146  Identities=15%  Similarity=0.157  Sum_probs=97.8

Q ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          76 VPEMIEGMK--SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        76 i~~lv~~L~--s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      +..++..|.  ...++++..++-++.+++...     ..-...-+-..+-..+.....+-...++.+++.+-...++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~-----~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDAA-----REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            344555555  366788888888888886211     1222222233333334555555777889999999888888777


Q ss_pred             HHH-hcCCHHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH-HHHHHHHHHHh
Q psy9169         154 TVI-NANAIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT-FLRNIVWAISN  228 (440)
Q Consensus       154 ~i~-~~g~i~~L~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~-~~~~a~~~L~~  228 (440)
                      .+. ..|.++.++.++.  ..+..+...++.+|..=|.+ ..+|..+.+ .+++.|-.+++.+.+.. ++..++-+|..
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            554 6688999999998  67788888888888877766 677666655 46899999997666455 66666666543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2611|consensus

Probab=93.99  E-value=4.3  Score=39.60  Aligned_cols=131  Identities=13%  Similarity=0.139  Sum_probs=95.4

Q ss_pred             HHHhccCCChHHHHHHHHHHHHHhCCCc---HHHHHHHhcCCHHHHHHhhCCCC-------HHHHHHHHHHHHHhhCCCc
Q psy9169         122 CVELLDDENPNTQFEATWALTNIASGTS---EQTMTVINANAIPKFLQLLSSPH-------LNLAEQATWALGNIAGDGA  191 (440)
Q Consensus       122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~---~~~~~i~~~g~i~~L~~lL~~~~-------~~v~~~a~~~L~nl~~~~~  191 (440)
                      +..++...+.+-|+.|+...+..+.+..   ..++.+.+.-+.+.+-++|.+.+       .-.+..++..|.-+|.+ |
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~-p   94 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV-P   94 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-h
Confidence            5556677778889999999999886533   45567888888999999997633       23456677788888866 3


Q ss_pred             hhH--HHHHhcCChHHHHhhhCCCCcH------HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCC
Q psy9169         192 RAR--DLLLGLGTMPQILALVQPNTPT------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT  256 (440)
Q Consensus       192 ~~r--~~i~~~g~i~~L~~ll~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~  256 (440)
                      +..  ..++  ..||.|+.++....++      .+...+..+|..++... +.....+..|.++.+.++-.-.
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~  164 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELP  164 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCC
Confidence            321  2233  4589999999855443      48889999999999885 7777777889999998776443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.95  E-value=7  Score=40.38  Aligned_cols=276  Identities=14%  Similarity=0.088  Sum_probs=150.6

Q ss_pred             cCCHHHHHHHhc-----CC---CHHHHHHHHHHHHHHhcC-CCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHH
Q psy9169          73 KMTVPEMIEGMK-----SS---NPKMRMIATRSARKMLSK-ERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTN  143 (440)
Q Consensus        73 ~~~i~~lv~~L~-----s~---~~~~~~~a~~~l~~lls~-~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~n  143 (440)
                      +..++-+...|.     ++   ++....-|++.+.++.+. ..+.+...+.+.=+++.++..++++.--++..||..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            345566666662     11   223333455666655541 222455666666678888888888888899999999999


Q ss_pred             HhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHhhhCCCCcHHHHHH
Q psy9169         144 IASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LGTMPQILALVQPNTPTTFLRN  221 (440)
Q Consensus       144 la~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~L~~ll~~~~~~~~~~~  221 (440)
                      +..   +.....+-..+.+....+|++++-.|+-+|+-+|.-+..+. .....+.+  -+.++.|+.+-+.- +.+....
T Consensus       487 ~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~f-eiD~LS~  561 (970)
T COG5656         487 IEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTF-EIDPLSM  561 (970)
T ss_pred             HHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccc-cchHHHH
Confidence            843   34444445567788888999888888888999998888664 22233222  12333333333222 2444444


Q ss_pred             HHHHHHh-hhhCCCCCCCHHHHhhHHH----HHHHhhcCC-C-----HHHHHHHHHHHHHhc---c---CChhhHHHHHh
Q psy9169         222 IVWAISN-LCRNKNPAPDFEKIKICLP----LLNQLIHTT-D-----VETLSDICWALSYIS---D---GHNDKIQAVVD  284 (440)
Q Consensus       222 a~~~L~~-l~~~~~~~~~~~~~~~~~~----~L~~ll~~~-d-----~~i~~~a~~~L~~l~---~---~~~~~~~~l~~  284 (440)
                      +...+.. .+..-.| -.......++.    ....++..+ |     .+-...|.+.|..+.   -   ..+.. -.-+.
T Consensus       562 vMe~fVe~fseELsp-fa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~v-Lk~le  639 (970)
T COG5656         562 VMESFVEYFSEELSP-FAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLV-LKYLE  639 (970)
T ss_pred             HHHHHHHHhHHhhch-hHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHH-HHHHH
Confidence            4444332 2222111 11111222222    333333222 1     122333333333322   1   11111 11123


Q ss_pred             cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCCh-hHHHHHHHHHHHHhc
Q psy9169         285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRV-NIVKEAAWTISNITA  357 (440)
Q Consensus       285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~-~i~~~a~~~L~nl~~  357 (440)
                      ....|.+--.|.+.-.++-.+|+..+-+.+....+-...  .-|+.+.+.+++.++.. ....+++-++.|+..
T Consensus       640 ~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pi--mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit  711 (970)
T COG5656         640 VSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPI--MWGIFELLLNLLIDEITAVYSEEVADALDNFIT  711 (970)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhh--hhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            344555555567776778888888887765543332222  23677777777777663 667888899999773

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=93.94  E-value=0.86  Score=46.21  Aligned_cols=173  Identities=15%  Similarity=0.099  Sum_probs=115.9

Q ss_pred             HhcCCCHHHHHHHHHHHHH--HhcCCCCCcHHHHHHhCCHHHHHHhccC----CChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          82 GMKSSNPKMRMIATRSARK--MLSKERHPPIDELIEAGVVPICVELLDD----ENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        82 ~L~s~~~~~~~~a~~~l~~--lls~~~~~~~~~ii~~g~i~~Lv~lL~~----~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      .+...+.+....|...++.  ++-++      .-+-+..-|.+.+...+    +++.+|..|..+|..+..-+.+...  
T Consensus       861 ~IggtsEddf~da~~fikE~ElLyGe------ksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~--  932 (1128)
T COG5098         861 RIGGTSEDDFVDAFFFIKEKELLYGE------KSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS--  932 (1128)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHhhch------hHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH--
Confidence            4445555555566555542  22111      11223445555555533    7899999999999988665444322  


Q ss_pred             HhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         156 INANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       156 ~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                         .-+|.|+..+. +++|.+|.+|+-.||.+.---....+     ..-..|.+-|.+.+ ..+++.|..++.+|.-.. 
T Consensus       933 ---ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLyrrL~De~-~~V~rtclmti~fLilag- 1002 (1128)
T COG5098         933 ---EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLYRRLGDED-ADVRRTCLMTIHFLILAG- 1002 (1128)
T ss_pred             ---HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHHHHhcchh-hHHHHHHHHHHHHHHHcc-
Confidence               45788999887 78899999999999887632111111     12344555555444 789999999999988654 


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                          ...+.|-++.++.+|.++|.++..-|-..+..++..+.
T Consensus      1003 ----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098        1003 ----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred             ----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence                13357788999999999999998888888888886554

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.83  E-value=4.8  Score=36.16  Aligned_cols=203  Identities=18%  Similarity=0.154  Sum_probs=120.5

Q ss_pred             HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q psy9169         119 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL  197 (440)
Q Consensus       119 i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i  197 (440)
                      +|.|+.-+ +..+++++...+.+|..++.......     .-++..|..+...+.......+...+..+...++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            45555545 78899999999999999997752211     2345667777777777766667777777765543221   


Q ss_pred             HhcCChHHHHhh---------hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCCCHHHHHHHHHH
Q psy9169         198 LGLGTMPQILAL---------VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWA  267 (440)
Q Consensus       198 ~~~g~i~~L~~l---------l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~  267 (440)
                         +.+..++..         .......+.......++..+|... |.    .-..+++.+..++ ++.++.+...++.+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~----~g~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PD----HGVDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hh----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence               334433333         111222445555567888899876 32    4466888888888 78888999999999


Q ss_pred             HHHhccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCCh
Q psy9169         268 LSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRV  342 (440)
Q Consensus       268 L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~  342 (440)
                      +..++...--...     ..-..+.+-|..+ .+.+....+..++.+..+.-+ ..-......++..+-++..+.+.
T Consensus       146 l~~Lc~~~vvd~~-----s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  146 LAPLCEAEVVDFY-----SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHHhhccHH-----HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            9999943321111     1233344444333 345555444444444333211 11122334566667776666553

>KOG2025|consensus

Probab=93.77  E-value=2.8  Score=42.84  Aligned_cols=106  Identities=19%  Similarity=0.175  Sum_probs=79.2

Q ss_pred             hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169         116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD  195 (440)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (440)
                      .|.+..++....+.+..+|+.++.+|..+.....+ ....+-.++...+..=+.+..+.||.+|+.+|+.+-++...-  
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence            35566666666788889999999999999864333 344444577777888888888999999999999998542111  


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAIS  227 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~  227 (440)
                         +..++..+..+++++.++++++.++..+.
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence               23567889999999888999998755443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=93.68  E-value=8.5  Score=38.55  Aligned_cols=249  Identities=14%  Similarity=0.121  Sum_probs=139.9

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCCh---HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHH
Q psy9169          87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENP---NTQFEATWALTNIASGTSEQTMTVINANAIP  162 (440)
Q Consensus        87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~---~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~  162 (440)
                      ..+.|..+...+..++.......  ...+    ..+...+ ....+   ..+.+|+.+|++   +..+.  ...+.++.+
T Consensus        42 p~e~R~~~~~ll~~~i~~~~~~~--~~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~---~Grdi--~~~~~~i~~  110 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQDSSS--GLMR----AEFFRDISDPSNDDDFDLRLEALIALTD---NGRDI--DFFEYEIGP  110 (464)
T ss_pred             CHHHHHHHHHHHHHHHHcccccc--HHHH----HHHHHHHhcCCCchhHHHHHHHHHHHHc---CCcCc--hhcccchHH
Confidence            46778888888887776544210  1111    1223333 33333   355666665554   32222  224567777


Q ss_pred             HHHHhhCCC---------------------------CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc
Q psy9169         163 KFLQLLSSP---------------------------HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP  215 (440)
Q Consensus       163 ~L~~lL~~~---------------------------~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~  215 (440)
                      .|...|..-                           +.......+..+.|+...+...-+.-.-.+++..++.+......
T Consensus       111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~  190 (464)
T PF11864_consen  111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSS  190 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCc
Confidence            777666311                           22334455566666665544332333334556666666555554


Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169         216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL  295 (440)
Q Consensus       216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL  295 (440)
                      ....+.++..+-.+.....  .+......++..|.......  .....+..++.+|+......       ..+..|..+|
T Consensus       191 ~~di~~~L~vldaii~y~~--iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL  259 (464)
T PF11864_consen  191 EDDIEACLSVLDAIITYGD--IPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDIL  259 (464)
T ss_pred             HHHHHHHHHHHHHHHHcCc--CChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHH
Confidence            5556666666666655432  22233444555554443322  56666777888888644322       2366777888


Q ss_pred             cC------CChhHHHHHHHHHHHhhcCChHHHHHHHHc---CCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         296 DS------EETTILTAALRTVGNIATGNDHQTDCVIQA---GGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       296 ~~------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~---g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ..      .+..+..-|+..++.+..+..+....-+..   -+++.|...++.+++.+-.+....+.++..
T Consensus       260 ~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  260 RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             cccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            32      234577789999999988773322222222   278888888988888787788888877773

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.68  E-value=0.74  Score=39.77  Aligned_cols=80  Identities=13%  Similarity=0.079  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHhccCChhhHHHHHhc--CC--hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH--cCCHH
Q psy9169         258 VETLSDICWALSYISDGHNDKIQAVVDT--GV--VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ--AGGLQ  331 (440)
Q Consensus       258 ~~i~~~a~~~L~~l~~~~~~~~~~l~~~--g~--~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~--~g~l~  331 (440)
                      ..-......++.|++.....+ +.+++.  +.  +..|+.++.+.+..-+.-++.+|.|+|...+.+...+-+  .++++
T Consensus        72 ~~~~~yla~vl~NlS~~~~gR-~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp  150 (192)
T PF04063_consen   72 KDNYDYLASVLANLSQLPEGR-QFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILP  150 (192)
T ss_pred             CcchhHHHHHHHHhcCCHHHH-HHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHH
Confidence            445677788899999877655 556554  34  788888888887666778999999999887766443332  24555


Q ss_pred             HHHHHhc
Q psy9169         332 KMKKLLS  338 (440)
Q Consensus       332 ~L~~ll~  338 (440)
                      .|+--+.
T Consensus       151 ~LLlPLa  157 (192)
T PF04063_consen  151 YLLLPLA  157 (192)
T ss_pred             HHHhhcc
Confidence            5555444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2611|consensus

Probab=93.67  E-value=7.6  Score=38.00  Aligned_cols=189  Identities=14%  Similarity=0.104  Sum_probs=114.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHhCCHHHHHHhccC-----CCh--HHHHHHHHHHHHHhC
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP--IDELIEAGVVPICVELLDD-----ENP--NTQFEATWALTNIAS  146 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g~i~~Lv~lL~~-----~~~--~i~~~a~~~L~nla~  146 (440)
                      ......++...+.+.|+.|+-...+.........  ...+.++-+.+.+-++|.+     +-|  -.+.-++.+|+..|.
T Consensus        13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            3446677778888899999999998876554222  4457777778888888832     122  244556677777776


Q ss_pred             CCcHHHH--HHHhcCCHHHHHHhhCCCC-------HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHH
Q psy9169         147 GTSEQTM--TVINANAIPKFLQLLSSPH-------LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT  217 (440)
Q Consensus       147 ~~~~~~~--~i~~~g~i~~L~~lL~~~~-------~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~  217 (440)
                      . ++...  .++  +.||.|..++....       ..+.+.+..+|..+++. +.....++..|+++.+.++-.-.+-..
T Consensus        93 ~-pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~  168 (698)
T KOG2611|consen   93 V-PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYELPDGSH  168 (698)
T ss_pred             C-hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHhCCCCch
Confidence            5 33222  333  67899999997522       23788999999999988 445577888999999997765322111


Q ss_pred             HHHHHHHHHH----hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy9169         218 FLRNIVWAIS----NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI  271 (440)
Q Consensus       218 ~~~~a~~~L~----~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l  271 (440)
                      -..-++..+.    .+-.++.   .......++..+..=+...+....-..|..|..+
T Consensus       169 d~alal~Vlll~~~~~~cw~e---~~~~flali~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  169 DMALALKVLLLLVSKLDCWSE---TIERFLALIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             hHHHHHHHHHHHHHhcccCcC---CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            1111111111    1222221   1222223344444444455666777788887743

>KOG1832|consensus

Probab=93.66  E-value=2.6  Score=44.17  Aligned_cols=102  Identities=13%  Similarity=0.106  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHhccCChhhHHHHHh----c---CChHHHHHhcc----CCChhHHHHHHHHHHHhhcCChHHH-----
Q psy9169         258 VETLSDICWALSYISDGHNDKIQAVVD----T---GVVPRLVELLD----SEETTILTAALRTVGNIATGNDHQT-----  321 (440)
Q Consensus       258 ~~i~~~a~~~L~~l~~~~~~~~~~l~~----~---g~~~~Lv~lL~----~~~~~v~~~al~~L~nl~~~~~~~~-----  321 (440)
                      .+....|+.+|+-++.-++-+.+..-.    .   .++..++..-.    -.+++++.+|+.+|-|++.+.++..     
T Consensus       623 ~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~  702 (1516)
T KOG1832|consen  623 HDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIV  702 (1516)
T ss_pred             hHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhh
Confidence            356777777777777666544322211    1   12222322211    1268999999999999987542211     


Q ss_pred             ------------------------------HHHHHcCCHHHHHHHhcCCCh-----hHHHHHHHHHHHHhcCC
Q psy9169         322 ------------------------------DCVIQAGGLQKMKKLLSSSRV-----NIVKEAAWTISNITAGN  359 (440)
Q Consensus       322 ------------------------------~~l~~~g~l~~L~~ll~~~~~-----~i~~~a~~~L~nl~~~~  359 (440)
                                                    ..+...++|..|+++|+...|     .+|+.||.+|.-++.++
T Consensus       703 ~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~  775 (1516)
T KOG1832|consen  703 AVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD  775 (1516)
T ss_pred             hccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc
Confidence                                          122346789999999986543     69999999999998753

>KOG1020|consensus

Probab=93.56  E-value=2.1  Score=47.36  Aligned_cols=141  Identities=9%  Similarity=0.046  Sum_probs=97.5

Q ss_pred             CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHH
Q psy9169         201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ  280 (440)
Q Consensus       201 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~  280 (440)
                      +.+..++..+..+. ..++..|+.||+.+...++   .......+-..+..-+.++...|+.+|+..++......++.+.
T Consensus       816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp---~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADP---SVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcCh---HhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence            35666777777555 8999999999999997762   1222234444555556677889999999999987766665544


Q ss_pred             HHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc---CCChhHHHHHHHHHHHHh
Q psy9169         281 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       281 ~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~---~~~~~i~~~a~~~L~nl~  356 (440)
                      ..     ...+..-..++...||..+++++..+|...+....      +.....+++.   +.+..|++-++-++.++=
T Consensus       892 qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  892 QY-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             HH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence            43     45666667778889999999999999988776543      2233344443   333457777777776654

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.44  E-value=2.3  Score=36.39  Aligned_cols=116  Identities=10%  Similarity=0.047  Sum_probs=81.9

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-------------------cCChHHHHhhhCCCCcHHHHHH
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG-------------------LGTMPQILALVQPNTPTTFLRN  221 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-------------------~g~i~~L~~ll~~~~~~~~~~~  221 (440)
                      .+.+.-++.++++++|..|+.+|..+-.++..+-...-+                   ......|+..|....+..+...
T Consensus        42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q  121 (182)
T PF13251_consen   42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQ  121 (182)
T ss_pred             cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            445556667888999999999999988654322111110                   1234456666776766888999


Q ss_pred             HHHHHHhhhhCCCC-CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         222 IVWAISNLCRNKNP-APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       222 a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                      ++.++..|....+- ..+......++..+..++.+.|..++..++.+++.+....+
T Consensus       122 ~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  122 LLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            99999999987621 12344557777888888899999999999999988876543

>KOG3665|consensus

Probab=93.31  E-value=2.4  Score=44.49  Aligned_cols=195  Identities=20%  Similarity=0.215  Sum_probs=118.9

Q ss_pred             HHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh--HHHHhhhCCCCcH
Q psy9169         140 ALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTM--PQILALVQPNTPT  216 (440)
Q Consensus       140 ~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i--~~L~~ll~~~~~~  216 (440)
                      +|++++..+++..+.+++.|++..+..+++. .+.++...++..++|++...+. +........+  ..+-.++...+..
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~-~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLEL-RELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHhhcchh
Confidence            7778888899999999999999999999986 4588999999999999955321 1222211112  2333344455544


Q ss_pred             HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc
Q psy9169         217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD  296 (440)
Q Consensus       217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~  296 (440)
                      +.-..++..|+.+..+.+..........+-..+.+.               +.......   +....+.-..+.+..++.
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~---------------i~~~~~~~---~~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEA---------------ISRWLTSE---IRVINDRSFFPRILRILR  634 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHH---------------hhccCccc---eeehhhhhcchhHHHHhc
Confidence            667777777777776543322222122222222222               22221111   111111112221444443


Q ss_pred             -CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy9169         297 -SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTIS  353 (440)
Q Consensus       297 -~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~  353 (440)
                       +..+..+..|++++.+++..+++....+.+.|+++.+.++-.... ..++.++.-.+-
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  693 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE  693 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence             345578899999999999998888888999999998888765443 345555544443

>KOG1820|consensus

Probab=93.00  E-value=3.2  Score=44.06  Aligned_cols=188  Identities=11%  Similarity=0.042  Sum_probs=126.5

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE  240 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  240 (440)
                      .+.|-.-+.+++..-+..|+..+.-+..... ........|.+-.++.....+.+..+...++.+|..++..-.. ....
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~-~~~~  332 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP-LFRK  332 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch-hhHH
Confidence            3444555556677778788888877775533 1111123345556666666677788999999999999977522 2344


Q ss_pred             HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-H
Q psy9169         241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-H  319 (440)
Q Consensus       241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~  319 (440)
                      ....++|.+.+.+......++..+..++-.++....-       ....+.+...+.+.++.++..+...+.......+ .
T Consensus       333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence            5578889999988887777766666655544432211       1347788889999999999998888877766444 1


Q ss_pred             HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         320 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       320 ~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ....-.-.++++.++....+.+..||+.|.-++.-+..
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            11111123578888888888889999999888887764

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=92.84  E-value=6.7  Score=35.86  Aligned_cols=219  Identities=13%  Similarity=0.094  Sum_probs=123.9

Q ss_pred             HHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q psy9169         122 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLG  199 (440)
Q Consensus       122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~  199 (440)
                      |-..|.++++.+|..|+.+|+.+...-+..   .....-+..|+.++.+  .+......++.++..+..........  .
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~   78 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--A   78 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--H
Confidence            445677889999999999999887654421   1222334444444433  33344444466666666332211111  1


Q ss_pred             cCChHHHHhhhCC-CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChh
Q psy9169         200 LGTMPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       200 ~g~i~~L~~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                      ..++..+.+-... ......+..+...+..+........ ...-..++..+++++.. .||.-..-++..+..+...-+ 
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-  156 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-  156 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-
Confidence            1123333322221 1124566677777777765531111 11224677777777765 588888888888877765433 


Q ss_pred             hHHHHHhcCChHHHHHhccC-------C---Ch-hHH-HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHH
Q psy9169         278 KIQAVVDTGVVPRLVELLDS-------E---ET-TIL-TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV  345 (440)
Q Consensus       278 ~~~~l~~~g~~~~Lv~lL~~-------~---~~-~v~-~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~  345 (440)
                           + ....+.+.+.+..       +   ++ .|. ..--..|.+..++++....     -++|.|++-|.++.+.+|
T Consensus       157 -----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  157 -----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHH
Confidence                 1 2334444444422       1   21 222 2233445555555554443     467899999999999999


Q ss_pred             HHHHHHHHHHhcC
Q psy9169         346 KEAAWTISNITAG  358 (440)
Q Consensus       346 ~~a~~~L~nl~~~  358 (440)
                      ..+..+|..++..
T Consensus       226 ~D~L~tL~~c~~~  238 (262)
T PF14500_consen  226 LDSLQTLKACIEN  238 (262)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998864

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.78  E-value=2.6  Score=40.63  Aligned_cols=148  Identities=13%  Similarity=0.123  Sum_probs=88.4

Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc------CCCHHHHHHHHHHHH
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH------TTDVETLSDICWALS  269 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~------~~d~~i~~~a~~~L~  269 (440)
                      .+.+..-.+.+-+-+..++...-++.|+..+..|+.... .   ....-+...+..++.      ..+..-...|+..++
T Consensus       205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~-~---~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~  280 (370)
T PF08506_consen  205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE-K---QVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIG  280 (370)
T ss_dssp             HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh-H---HHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence            344555556666666554546678888999999996641 1   111112223333343      356677888888888


Q ss_pred             HhccCChh------------hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHh
Q psy9169         270 YISDGHND------------KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL  337 (440)
Q Consensus       270 ~l~~~~~~------------~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll  337 (440)
                      .++.....            .+..+....++|.|. --.+..+-++..|++.+...-..-+.  +.+.  ++++.++..|
T Consensus       281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~L  355 (370)
T PF08506_consen  281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNHL  355 (370)
T ss_dssp             HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHHT
T ss_pred             HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHHh
Confidence            88865421            234445556666665 11233466888899998887654332  2232  4799999999


Q ss_pred             cCCChhHHHHHHHHH
Q psy9169         338 SSSRVNIVKEAAWTI  352 (440)
Q Consensus       338 ~~~~~~i~~~a~~~L  352 (440)
                      .+++..+...|+.++
T Consensus       356 ~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TSS-HHHHHHHHHHH
T ss_pred             CCCCcchhhhhhhhC
Confidence            999999999999875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2999|consensus

Probab=92.73  E-value=5  Score=39.85  Aligned_cols=164  Identities=11%  Similarity=0.123  Sum_probs=110.5

Q ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhH
Q psy9169         119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGNIAGDGARAR  194 (440)
Q Consensus       119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r  194 (440)
                      ...+.+.+.++++.-+..++..|..++.+ ......++...++..|..++.+..    .++...++.++..+-..+-..-
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            55677888888888888899999999866 677788899999999999999865    4677777777777665432111


Q ss_pred             HHHHhcCChHHHHhhhC-CCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169         195 DLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD  273 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~  273 (440)
                      +. +...++.....+.. ...+..+...|+..|-++..+.+.....+...--+..|+..+...+..+...|...+-.+..
T Consensus       164 ~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             ee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            11 11223333333332 12235677778888888887764344444445667888899999998888888777766654


Q ss_pred             C-ChhhHHHHHh
Q psy9169         274 G-HNDKIQAVVD  284 (440)
Q Consensus       274 ~-~~~~~~~l~~  284 (440)
                      . +++....+.+
T Consensus       243 ~a~~~~R~~~~~  254 (713)
T KOG2999|consen  243 KAPDDKRFEMAK  254 (713)
T ss_pred             hCChHHHHHHHH
Confidence            3 3334444443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=92.68  E-value=12  Score=37.49  Aligned_cols=244  Identities=14%  Similarity=0.187  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH
Q psy9169          88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ  166 (440)
Q Consensus        88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~  166 (440)
                      ...+..|+..++..+..-+-.++..     +...--.++ ....++.|..+...|..++.+...... ...    ..+..
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHH
Confidence            4567777888877765443222222     222223444 344567899898899888866433111 111    11222


Q ss_pred             hhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC--------------------------cHHHH
Q psy9169         167 LLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--------------------------PTTFL  219 (440)
Q Consensus       167 lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~--------------------------~~~~~  219 (440)
                      .+.. ..++-...-+.+|..|..++... + .++.++.+.|..-+...-                          +....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            2232 33444455666777777666554 2 246667777766553110                          12334


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhc
Q psy9169         220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELL  295 (440)
Q Consensus       220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~---~~~~~~~~l~~~g~~~~Lv~lL  295 (440)
                      ......+.|+........+.....+++..+..+.. ..++.....++..+-.+..   -+++.         ++.++..|
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s---------l~~~i~vL  222 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES---------LSPCIEVL  222 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH---------HHHHHHHH
Confidence            44555555665554444455555666666655543 2334444455444443332   12222         33333333


Q ss_pred             c--CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC------ChhHHHHHHHHHHHHhcCC
Q psy9169         296 D--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS------RVNIVKEAAWTISNITAGN  359 (440)
Q Consensus       296 ~--~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~------~~~i~~~a~~~L~nl~~~~  359 (440)
                      -  +...+....+-.++.||+...-.+       -.+..|..+|.++      +..+.+.|...+..+..+.
T Consensus       223 Csi~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~  287 (464)
T PF11864_consen  223 CSIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS  287 (464)
T ss_pred             hhHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence            2  122367778888999998654322       1345677777322      3456678888888887665

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.39  E-value=2.5  Score=42.23  Aligned_cols=120  Identities=16%  Similarity=0.185  Sum_probs=80.1

Q ss_pred             HHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHH
Q psy9169         266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV  345 (440)
Q Consensus       266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~  345 (440)
                      ..+.|....+++....+  .|.+.+++.-+.+++..|+..++.+|+.++-.-.+ ++..+-.|++..|..-+-+..+.+|
T Consensus        73 ~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-IDe~l~N~L~ekl~~R~~DRE~~VR  149 (885)
T COG5218          73 RFFEYDMPDDPEGEELV--AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-IDEVLANGLLEKLSERLFDREKAVR  149 (885)
T ss_pred             HHHHhcCCCChhhhHHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHhcchHHHH
Confidence            33334444455442222  46678888888899999999999999988754332 3334555788888887777889999


Q ss_pred             HHHHHHHHHHhcC--ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy9169         346 KEAAWTISNITAG--NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII  407 (440)
Q Consensus       346 ~~a~~~L~nl~~~--~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il  407 (440)
                      .+|..+|+.+-..  +++.           ..+..+        +.-+|+.|+.+|+..|.--|
T Consensus       150 ~eAv~~L~~~Qe~~~neen-----------~~~n~l--------~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         150 REAVKVLCYYQEMELNEEN-----------RIVNLL--------KDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             HHHHHHHHHHHhccCChHH-----------HHHHHH--------HHHHhcCcHHHHHHHHHHHe
Confidence            9999999998642  2221           111111        23357788888988886544

>KOG1566|consensus

Probab=92.23  E-value=9.5  Score=35.27  Aligned_cols=210  Identities=10%  Similarity=0.081  Sum_probs=142.4

Q ss_pred             HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC--HHHH---hhHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy9169         195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKI---KICLPLLNQLIHTTDVETLSDICWALS  269 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~---~~~~~~L~~ll~~~d~~i~~~a~~~L~  269 (440)
                      ..+...|.+..|+..+.... -+.+..++....++-+.......  ..+.   .+++..++..-.. .+++...+-..+.
T Consensus        73 qef~~~~~l~~lI~~l~~l~-fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLE-FESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhhhccc-chhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            34556788888888887666 67788888888888865422211  1111   3445555444111 3555555444444


Q ss_pred             HhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCC----HHHHHHHhcCCChhHH
Q psy9169         270 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG----LQKMKKLLSSSRVNIV  345 (440)
Q Consensus       270 ~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~----l~~L~~ll~~~~~~i~  345 (440)
                      ..... ......+....-+.....++..+.-++...|..+...+.+........++..+.    .+.--.++.+++.-++
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk  229 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK  229 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Confidence            44443 334466777778888888888898899999999999999877766666666543    4446678889999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCccc
Q psy9169         346 KEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN  417 (440)
Q Consensus       346 ~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~  417 (440)
                      +.+...|+.+.-+.+..          ..+...+.+-.-+..+..|+..+...++-.|..+-..|-......
T Consensus       230 rqs~kllg~llldr~N~----------~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~  291 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNS----------AVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKP  291 (342)
T ss_pred             HHHHHhHHHHHhCCCcH----------HHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCC
Confidence            99999999988764432          233455555556777788888888888888888777766554433

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.23  E-value=1  Score=38.96  Aligned_cols=103  Identities=15%  Similarity=0.175  Sum_probs=69.8

Q ss_pred             CChHHHHHHHHHHHHHhCCCcHHHHHHH----------------hcCCHHHHHHhhCC------CCHHHHHHHHHHHHHh
Q psy9169         129 ENPNTQFEATWALTNIASGTSEQTMTVI----------------NANAIPKFLQLLSS------PHLNLAEQATWALGNI  186 (440)
Q Consensus       129 ~~~~i~~~a~~~L~nla~~~~~~~~~i~----------------~~g~i~~L~~lL~~------~~~~v~~~a~~~L~nl  186 (440)
                      +....-..++.+|.|++...... ..++                ....+..|+.++..      ....-....+.+|.|+
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl   85 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL   85 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence            34445566777788887653332 2222                22356677777755      2245567889999999


Q ss_pred             hCCCchhHHHHHhc--CC--hHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         187 AGDGARARDLLLGL--GT--MPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       187 ~~~~~~~r~~i~~~--g~--i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                      +.. +..|..++..  +.  +..|+..+.+. +..-+.-++.+|.|+|-...
T Consensus        86 S~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~  135 (192)
T PF04063_consen   86 SQL-PEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTD  135 (192)
T ss_pred             cCC-HHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHh
Confidence            988 8888988844  34  66777777766 46677789999999998763

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1949|consensus

Probab=92.05  E-value=1.6  Score=44.39  Aligned_cols=184  Identities=13%  Similarity=0.113  Sum_probs=115.4

Q ss_pred             HHHHHhccCCChHHHHHHHHHHHHHhCC-Cc----HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q psy9169         120 PICVELLDDENPNTQFEATWALTNIASG-TS----EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR  194 (440)
Q Consensus       120 ~~Lv~lL~~~~~~i~~~a~~~L~nla~~-~~----~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (440)
                      |.|..-|+..|..+|..|+..+.+..-- ++    +..+.+++ .-...|..+|.++-+.+|..|+..++.+...   +-
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fW  252 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK---FW  252 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HH
Confidence            3444555678999999999999998532 12    22233332 3466788999999999999988877776532   11


Q ss_pred             HHHHhcC----ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy9169         195 DLLLGLG----TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY  270 (440)
Q Consensus       195 ~~i~~~g----~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~  270 (440)
                       .++-..    .+..+..-+..++..+++..+...|..+..++   ........++|.+-..+.+....++.++...|..
T Consensus       253 -e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np---~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  253 -EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP---LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             -HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc---cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence             111112    23333333445555678888888888888765   3345567788888889999999999999888887


Q ss_pred             hccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         271 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       271 l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      +-......   +.+---.+.++.-|..++..+...-+..|-+.+
T Consensus       329 ik~vra~~---f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  329 IKAVRAAK---FWKICPMDHILVRLETDSRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             HHhhhhhh---hhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence            76433211   111122344555555555555555555555544

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=91.86  E-value=2.2  Score=36.00  Aligned_cols=113  Identities=15%  Similarity=0.174  Sum_probs=76.0

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169         159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA  236 (440)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  236 (440)
                      ..+..+..+|.+.+++-+-.++..+.-++..++.  +.+..  ...+..|+.+++..++..+.+.++.++..|...-...
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4566788889998888888888888888866532  33333  2367888999998888899999999999988654333


Q ss_pred             CCHHH------HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169         237 PDFEK------IKICLPLLNQLIHTTDVETLSDICWALSYISDGH  275 (440)
Q Consensus       237 ~~~~~------~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~  275 (440)
                      +....      ...+++.++.+++.  ......++.+|..+....
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            33321      23445555555554  455666666666665433

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=91.84  E-value=7.7  Score=33.42  Aligned_cols=147  Identities=16%  Similarity=0.130  Sum_probs=88.2

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      -++.+++...+++..++..|+..+.-++...=-.|.      ..+|.|+.+..++++.++..|...+..+....+.....
T Consensus         9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen    9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH
Confidence            367788888899999999999999877754321222      36999999999999999999999999998765554443


Q ss_pred             HHhcCCHHHHHHh--hCCCC-HHH---HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC-------cHHHHHH
Q psy9169         155 VINANAIPKFLQL--LSSPH-LNL---AEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-------PTTFLRN  221 (440)
Q Consensus       155 i~~~g~i~~L~~l--L~~~~-~~v---~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~-------~~~~~~~  221 (440)
                      -...|+-..+--.  +..+. ...   ....+..+..+...+...|..+     +..|++.+....       ...-...
T Consensus        83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence            3333322221111  11111 111   3444555556665555555544     444555544321       2333445


Q ss_pred             HHHHHHhhhhC
Q psy9169         222 IVWAISNLCRN  232 (440)
Q Consensus       222 a~~~L~~l~~~  232 (440)
                      .+++..||+.-
T Consensus       158 ~~Fla~nLA~l  168 (187)
T PF12830_consen  158 LLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHhcC
Confidence            55555555543

>KOG2933|consensus

Probab=91.74  E-value=2.1  Score=39.36  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=79.6

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHH
Q psy9169         244 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC  323 (440)
Q Consensus       244 ~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~  323 (440)
                      ..+...+..|.+.|.+...+.+..|..|+....+.....+ +.++..+++-+++....|...||-+++.|.+.-...+..
T Consensus        88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~  166 (334)
T KOG2933|consen   88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ  166 (334)
T ss_pred             HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566777888999999999999999987776554444 245777788888888899999999999998866555544


Q ss_pred             HHHcCCHHHHH-HHhcCC---ChhHHHHHHHHHHHHhcC
Q psy9169         324 VIQAGGLQKMK-KLLSSS---RVNIVKEAAWTISNITAG  358 (440)
Q Consensus       324 l~~~g~l~~L~-~ll~~~---~~~i~~~a~~~L~nl~~~  358 (440)
                      .     ++.++ .++...   +.-++..|-.+|..++..
T Consensus       167 ~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~  200 (334)
T KOG2933|consen  167 E-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNH  200 (334)
T ss_pred             H-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence            3     23333 333332   345889999999999875

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.65  E-value=18  Score=37.32  Aligned_cols=134  Identities=16%  Similarity=0.170  Sum_probs=83.9

Q ss_pred             ChHHHHhhhCCC---CcHHHHHHHHHHHHhhhh----CCCCCCCHHHHhhHHHHHHHhhc----CCCHHHHHHHHHHHHH
Q psy9169         202 TMPQILALVQPN---TPTTFLRNIVWAISNLCR----NKNPAPDFEKIKICLPLLNQLIH----TTDVETLSDICWALSY  270 (440)
Q Consensus       202 ~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~~L~~ll~----~~d~~i~~~a~~~L~~  270 (440)
                      .+..+..++.++   ....+...++-+++.+..    ..+.. .......+++.+...|.    ..+.+.+...+.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            356666777643   234566666666666554    32111 12334566777666553    4566677888899988


Q ss_pred             hccCChhhHHHHHhcCChHHHHHhcc-C--CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHH
Q psy9169         271 ISDGHNDKIQAVVDTGVVPRLVELLD-S--EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIV  345 (440)
Q Consensus       271 l~~~~~~~~~~l~~~g~~~~Lv~lL~-~--~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~  345 (440)
                      +.....           ++.+..++. .  .+..++..|+++|..++...+...+        +.|+.++.+.  ++++|
T Consensus       473 ~g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvR  533 (574)
T smart00638      473 AGHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVR  533 (574)
T ss_pred             cCChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHH
Confidence            875332           455555554 2  2457999999999998865554433        5567766654  46788


Q ss_pred             HHHHHHHHHH
Q psy9169         346 KEAAWTISNI  355 (440)
Q Consensus       346 ~~a~~~L~nl  355 (440)
                      ..|+.+|...
T Consensus       534 iaA~~~lm~t  543 (574)
T smart00638      534 MAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHhc
Confidence            8888777654

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.53  E-value=14  Score=38.49  Aligned_cols=170  Identities=15%  Similarity=0.160  Sum_probs=91.1

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC---CcHHHHHHHHHHHHhhhh----C
Q psy9169         160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCR----N  232 (440)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~----~  232 (440)
                      ++..+.+++.+....-. .|.+.|..+.......-     ...+..+..++...   .+..+...++.+++.+..    .
T Consensus       396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~  469 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN  469 (618)
T ss_dssp             HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence            45666777766442211 23333433332211110     12345555565532   224555556656655543    3


Q ss_pred             C-----CCCCCHHHHhhHHHHHHHhh----cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC---Ch
Q psy9169         233 K-----NPAPDFEKIKICLPLLNQLI----HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE---ET  300 (440)
Q Consensus       233 ~-----~~~~~~~~~~~~~~~L~~ll----~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~---~~  300 (440)
                      .     ...........+++.+...+    ...|..-+..++.+|+|+...           ..++.|..++...   +.
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-H
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccch
Confidence            1     00111223344555555544    456778889999999999642           2377888888665   56


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHH
Q psy9169         301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISN  354 (440)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~n  354 (440)
                      .++..|+++|..++...+..+.        +.|..++.+.  ++++|-.|..+|..
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~  586 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR  586 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh
Confidence            8999999999998776664433        6677777654  45788888766665

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.36  E-value=1.2  Score=33.41  Aligned_cols=72  Identities=7%  Similarity=0.042  Sum_probs=58.2

Q ss_pred             hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169         288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                      +...+..+.++.+.+|..++..|+.++....  ....--.+++..+...+.++++-|--.|..+|+.++...++
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            4566777888999999999999999998766  11122246788899999999999999999999999976554

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=91.18  E-value=1.4  Score=37.97  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             ChhhHHHHHhcCChHHHHHhccC---------CChhHHHHHHHHHHHhhcCChHHHHHHHH-cCCHHHHHHHhcCCChhH
Q psy9169         275 HNDKIQAVVDTGVVPRLVELLDS---------EETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNI  344 (440)
Q Consensus       275 ~~~~~~~l~~~g~~~~Lv~lL~~---------~~~~v~~~al~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~i  344 (440)
                      +..-++.+++.|++..|+.+|..         .+......+++|+..|+.... ....+++ .+++..|...+.+++..+
T Consensus        96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s~~~~~  174 (187)
T PF06371_consen   96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDSPNIKT  174 (187)
T ss_dssp             -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--TTSHHH
T ss_pred             CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCCCCHHH
Confidence            33446777888889999988743         234678889999988876554 4444554 789999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy9169         345 VKEAAWTISNIT  356 (440)
Q Consensus       345 ~~~a~~~L~nl~  356 (440)
                      +..|+-.|+.+|
T Consensus       175 r~~~leiL~~lc  186 (187)
T PF06371_consen  175 RKLALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG0891|consensus

Probab=91.14  E-value=3  Score=49.25  Aligned_cols=267  Identities=12%  Similarity=0.112  Sum_probs=142.6

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCC----CcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169          83 MKSSNPKMRMIATRSARKMLSKERH----PPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN  157 (440)
Q Consensus        83 L~s~~~~~~~~a~~~l~~lls~~~~----~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~  157 (440)
                      +...+++.+..+...++.++.....    .+...=....++..+..+- .+.++.++......+.      ........+
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~laQ  563 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQLAQ  563 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhhcC
Confidence            4467788888887666666543221    0000101223344444444 5666676655544443      222334555


Q ss_pred             cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169         158 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP  237 (440)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  237 (440)
                      .+.+..+...+.++.-.+++.+...+++++..+|.+.-..+....+..+-.+-.+.. . +...-+...........+..
T Consensus       564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~-~-r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGM-A-RTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcch-H-HhHHHHHHHhhHHHHHHHHH
Confidence            667777777788888889999999999999877744222222222222222211111 1 11111111111110000000


Q ss_pred             CHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHHHHHHHHHHHhhcC
Q psy9169         238 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATG  316 (440)
Q Consensus       238 ~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~~~al~~L~nl~~~  316 (440)
                      -.......+..++..+...+..+...+..+++.||..........++ ..++.+.+.+.. .+..-+..++++++++...
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            11122334455666667777788889999999999766544334444 445555555543 3456778899999999875


Q ss_pred             ChHHHHHHHHc-CCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcC
Q psy9169         317 NDHQTDCVIQA-GGLQKMKKLLSSS-RVNIVKEAAWTISNITAG  358 (440)
Q Consensus       317 ~~~~~~~l~~~-g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~  358 (440)
                      .....+...+. -++..+...+... ...++.++...+.++.+.
T Consensus       721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            54322222221 2445555555544 346778888888876654

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.09  E-value=14  Score=37.30  Aligned_cols=104  Identities=15%  Similarity=0.130  Sum_probs=77.2

Q ss_pred             HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc--C
Q psy9169         239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT--G  316 (440)
Q Consensus       239 ~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~--~  316 (440)
                      ...+.+++..++..+.+.|..++..+|..|..++..-.+. ...+-.|++..|.+-+.+..+.|+..|+.+|+.+-.  +
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            4556777888888888899999999999999998766543 455667888899988888889999999999998753  2


Q ss_pred             ChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHH
Q psy9169         317 NDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAW  350 (440)
Q Consensus       317 ~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~  350 (440)
                      ++++       .+...|..++++ ++..+|+.|..
T Consensus       165 neen-------~~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         165 NEEN-------RIVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             ChHH-------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence            3322       123456666664 45577776543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=91.09  E-value=8.8  Score=36.97  Aligned_cols=238  Identities=13%  Similarity=0.164  Sum_probs=123.1

Q ss_pred             HHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCC-CHHHHHHH-HHHHHHhhCCCchhHH
Q psy9169         119 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQA-TWALGNIAGDGARARD  195 (440)
Q Consensus       119 i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a-~~~L~nl~~~~~~~r~  195 (440)
                      +..+++=+ .+....+|..++--|+.-+. ++..+..+...|.+..+++.+... +..+...+ +.++.-++.+.... .
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~-~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM-H  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch-h
Confidence            55555556 34556788888888888875 488999999999999999999553 33243333 44445555554332 3


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHH-HhhHHHHHHHhhc---------CCCHHHHHHHH
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIH---------TTDVETLSDIC  265 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~---------~~d~~i~~~a~  265 (440)
                      .+...+....++.++.-...........     ..    ....... ....+..+.+.+.         +....-+.-++
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-----~~----~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lal  171 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD-----SS----RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLAL  171 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh-----hh----hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHH
Confidence            3345555666666666110000000000     00    0000000 0111111111110         11112233333


Q ss_pred             HHHHHhc--------------cCChhhHHHHHhcCChHHHHHhcc----CC-------C-----hhHHHHHHHHHHHhhc
Q psy9169         266 WALSYIS--------------DGHNDKIQAVVDTGVVPRLVELLD----SE-------E-----TTILTAALRTVGNIAT  315 (440)
Q Consensus       266 ~~L~~l~--------------~~~~~~~~~l~~~g~~~~Lv~lL~----~~-------~-----~~v~~~al~~L~nl~~  315 (440)
                      .++-.++              ...+.....+...|++..++.++.    ..       .     ......++++|-|.+.
T Consensus       172 l~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~  251 (361)
T PF07814_consen  172 LALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTF  251 (361)
T ss_pred             HHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHh
Confidence            3333332              111223455667788999998875    11       0     1244567788888777


Q ss_pred             CChHHHHHHHHc--CCHHHH-HHHhcCC---ChhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169         316 GNDHQTDCVIQA--GGLQKM-KKLLSSS---RVNIVKEAAWTISNITAGNSRQIDHVI  367 (440)
Q Consensus       316 ~~~~~~~~l~~~--g~l~~L-~~ll~~~---~~~i~~~a~~~L~nl~~~~~~~~~~~i  367 (440)
                      .+..+...++..  +.++.+ ..++...   ...+...++..+.|++.+++..++.+-
T Consensus       252 ~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~  309 (361)
T PF07814_consen  252 LSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFA  309 (361)
T ss_pred             cCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhh
Confidence            666655555543  233333 2333322   234566789999999988876655443

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=90.99  E-value=4.2  Score=34.78  Aligned_cols=138  Identities=14%  Similarity=0.180  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHhhhhCCCCCCCHHHHhhHH------------HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169         218 FLRNIVWAISNLCRNKNPAPDFEKIKICL------------PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT  285 (440)
Q Consensus       218 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~------------~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~  285 (440)
                      ++..++.+|..+++..++..-+.....++            +.+.-++.++++.++..|+.++..|-++........-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            45566666666666632332222222222            223344567889999999999999988765443322211


Q ss_pred             -------------------CChHHHHHhccCC-ChhHHHHHHHHHHHhhcCChHHHHHHHHcC----CHHHHHHHhcCCC
Q psy9169         286 -------------------GVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAG----GLQKMKKLLSSSR  341 (440)
Q Consensus       286 -------------------g~~~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~l~~~g----~l~~L~~ll~~~~  341 (440)
                                         .+-..|+..|.++ +..+....+++++.++.+.+..+-   ..|    ++..+..++.+.|
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d  158 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD  158 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence                               1223345555444 567888999999999998875432   124    4455566777888


Q ss_pred             hhHHHHHHHHHHHHhcC
Q psy9169         342 VNIVKEAAWTISNITAG  358 (440)
Q Consensus       342 ~~i~~~a~~~L~nl~~~  358 (440)
                      ++++..+..+++-+.+.
T Consensus       159 ~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  159 PNVRVAALSCLGALLSV  175 (182)
T ss_pred             CcHHHHHHHHHHHHHcC
Confidence            89999998888888764

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=90.91  E-value=12  Score=34.06  Aligned_cols=178  Identities=18%  Similarity=0.176  Sum_probs=106.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCC-------CchhHHHHHhcCChHHHHhhhCCCC---cHHHHHHHHHHHHhhhh
Q psy9169         162 PKFLQLLSSPHLNLAEQATWALGNIAGD-------GARARDLLLGLGTMPQILALVQPNT---PTTFLRNIVWAISNLCR  231 (440)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~-------~~~~r~~i~~~g~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~  231 (440)
                      +.+.+=+.++  ...+.++..|..+...       ..+.|-.+.-.+.+|.++.-+.++.   .......++..|+.+|.
T Consensus        67 ~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~  144 (262)
T PF14225_consen   67 PLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE  144 (262)
T ss_pred             HHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence            3333334443  3445566666666622       1222444444566788888877666   23566778888999996


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG  311 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~  311 (440)
                      .. ...   ....++.....--..+..+-...++..|..-..  ++     .+..++..|+.+|.++.+.++..++.+|.
T Consensus       145 ~~-~~~---~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~  213 (262)
T PF14225_consen  145 AQ-GLP---NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PD-----HEFQILTFLLGLLENGPPWLRRKTLQILK  213 (262)
T ss_pred             hC-CCc---cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            54 221   223333333322233344555666665543221  11     12234778999999988899999999999


Q ss_pred             HhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      .+...-+....  ...+++.++.++++++   .-.+|..+|-++..
T Consensus       214 ~ll~~~d~~~~--~~~dlispllrlL~t~---~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  214 VLLPHVDMRSP--HGADLISPLLRLLQTD---LWMEALEVLDEIVT  254 (262)
T ss_pred             HHhccccCCCC--cchHHHHHHHHHhCCc---cHHHHHHHHHHHHh
Confidence            99875543322  4556899999999876   45577777776654

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=90.79  E-value=3.4  Score=43.11  Aligned_cols=148  Identities=12%  Similarity=0.102  Sum_probs=80.5

Q ss_pred             ChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC----CCHHHHHHHHHHHHHhccCChh
Q psy9169         202 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       202 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~----~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                      .+..+.+++.+.. .. -..+.+.|..+.... ..+.    ...+..+..++..    .++.+...|+.+++.+....-.
T Consensus       396 av~~i~~~I~~~~-~~-~~ea~~~l~~l~~~~-~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK-LT-DDEAAQLLASLPFHV-RRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT--S--HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-CC-HHHHHHHHHHHHhhc-CCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            4556666666543 11 122334444444433 1222    3345555555543    4566777777777777631110


Q ss_pred             h---------HHHHHhcCChHHHHHhcc----CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC---C
Q psy9169         278 K---------IQAVVDTGVVPRLVELLD----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS---R  341 (440)
Q Consensus       278 ~---------~~~l~~~g~~~~Lv~lL~----~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~---~  341 (440)
                      .         ....+...+++.+...|.    ..+...+..++++|||+-.  +         ..++.|..++...   .
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccc
Confidence            0         011122345666666654    3456778889999999843  2         3567777777665   4


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169         342 VNIVKEAAWTISNITAGNSRQIDHVI  367 (440)
Q Consensus       342 ~~i~~~a~~~L~nl~~~~~~~~~~~i  367 (440)
                      ..+|..|+|+|..++...++.+..++
T Consensus       538 ~~~R~~Ai~Alr~~~~~~~~~v~~~l  563 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHCPEKVREIL  563 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT-HHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence            67999999999999877776554443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=90.52  E-value=8.3  Score=36.65  Aligned_cols=157  Identities=15%  Similarity=0.149  Sum_probs=109.9

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHHHHh-cCC-hHHHHhhhCCC---Cc---------HHHHHHHHHH
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAG-DGARARDLLLG-LGT-MPQILALVQPN---TP---------TTFLRNIVWA  225 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~-~~~~~r~~i~~-~g~-i~~L~~ll~~~---~~---------~~~~~~a~~~  225 (440)
                      +..+-+.|.+....+...++..|..++. ++......+.. ... .+.+..++...   ..         ..++...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7888889998888888899999999998 66555555543 222 34455555311   11         1778888777


Q ss_pred             HHhhhhCCCCCCCHH--HHhhHHHHHHHhhcCCCHHHHHHHHHHHHH-hccCC---hhhHHHHHhcCChHHHHHhccCCC
Q psy9169         226 ISNLCRNKNPAPDFE--KIKICLPLLNQLIHTTDVETLSDICWALSY-ISDGH---NDKIQAVVDTGVVPRLVELLDSEE  299 (440)
Q Consensus       226 L~~l~~~~~~~~~~~--~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~-l~~~~---~~~~~~l~~~g~~~~Lv~lL~~~~  299 (440)
                      +..+....++.....  ...+.+..+.+-+..++++++...+.++.. +....   ......+.+..++..|+.+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            777776653433222  235678888888989999999999999985 33322   233455667778999999887776


Q ss_pred             h----hHHHHHHHHHHHhhcCC
Q psy9169         300 T----TILTAALRTVGNIATGN  317 (440)
Q Consensus       300 ~----~v~~~al~~L~nl~~~~  317 (440)
                      +    .+...+-..|..+|+..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p  239 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDP  239 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCC
Confidence            6    88888999999988754

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=90.46  E-value=6.1  Score=40.81  Aligned_cols=134  Identities=15%  Similarity=0.150  Sum_probs=82.1

Q ss_pred             CCHHHHHHhhCCC----CHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHhhhCC---CCcHHHHHHHHHHHH
Q psy9169         159 NAIPKFLQLLSSP----HLNLAEQATWALGNIAG----DGARARDLLLGLGTMPQILALVQP---NTPTTFLRNIVWAIS  227 (440)
Q Consensus       159 g~i~~L~~lL~~~----~~~v~~~a~~~L~nl~~----~~~~~r~~i~~~g~i~~L~~ll~~---~~~~~~~~~a~~~L~  227 (440)
                      ..+..+..++.++    +..++..|+-+++++..    +.+.+. ..+....++.+...|..   ..+..-+..++.+|+
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            3566777777764    36788888888887762    222111 11223456666666642   122444566777777


Q ss_pred             hhhhCCCCCCCHHHHhhHHHHHHHhhc---CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--CChhH
Q psy9169         228 NLCRNKNPAPDFEKIKICLPLLNQLIH---TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTI  302 (440)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~---~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~~~~v  302 (440)
                      |+....           .++.+..++.   ..+..++..|+|+|..++...+...        -+.|+.++.+  .++++
T Consensus       472 N~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHH
Confidence            776443           3445555554   2356899999999999886555432        4556666654  35688


Q ss_pred             HHHHHHHHHH
Q psy9169         303 LTAALRTVGN  312 (440)
Q Consensus       303 ~~~al~~L~n  312 (440)
                      |..|+.+|-.
T Consensus       533 RiaA~~~lm~  542 (574)
T smart00638      533 RMAAVLVLME  542 (574)
T ss_pred             HHHHHHHHHh
Confidence            8888876654

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=89.47  E-value=21  Score=34.42  Aligned_cols=93  Identities=15%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             HHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH
Q psy9169         161 IPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF  239 (440)
Q Consensus       161 i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~  239 (440)
                      +..++.=|.. ....+|..++--|+.-+.+ +.+|..+..+|.+..+.+.+....+..+...++.++..+...+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            3444444442 3367888888888888887 8889999999999999999965443435555555555555444344444


Q ss_pred             HHHhhHHHHHHHhhc
Q psy9169         240 EKIKICLPLLNQLIH  254 (440)
Q Consensus       240 ~~~~~~~~~L~~ll~  254 (440)
                      .........+..++.
T Consensus       102 ~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhchhHHHHHHHHhc
Confidence            334556666666666

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.40  E-value=2  Score=35.28  Aligned_cols=92  Identities=12%  Similarity=0.089  Sum_probs=63.9

Q ss_pred             CHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHH
Q psy9169         329 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH-ENETVYQKCYKII  407 (440)
Q Consensus       329 ~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~-~~~~v~~~a~~il  407 (440)
                      ++..|..-+.++++.++..|.-.|-.++.++...            +...+..-..++.|..+... .+++|++++..+|
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li  105 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVV  105 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            4566788888889999999988888888765432            33344455567777777776 7899999999999


Q ss_pred             HhhCCCCccccc----------cCCCccccCCCCC
Q psy9169         408 SMAFNDSAENSI----------ENGDTIEFNPQPV  432 (440)
Q Consensus       408 ~~~~~~~~~~~~----------~~~~~~~~~~~~~  432 (440)
                      ..|...-..++.          -...++.|..++.
T Consensus       106 ~~W~~~f~~~~~l~~i~~~y~~L~~~G~~f~~~~~  140 (144)
T cd03568         106 KQWADEFKNDPSLSLMSDLYKKLKNEGPDLVTPDE  140 (144)
T ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHcCCCCCCCCC
Confidence            999544433322          1234677765544

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.27  E-value=5.9  Score=36.35  Aligned_cols=160  Identities=18%  Similarity=0.128  Sum_probs=93.5

Q ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcC--CHHHHHHhhCC----CCHHHHHHHHHHHHHhhCCCch
Q psy9169         119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQLLSS----PHLNLAEQATWALGNIAGDGAR  192 (440)
Q Consensus       119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g--~i~~L~~lL~~----~~~~v~~~a~~~L~nl~~~~~~  192 (440)
                      ...+...+..-.++-++-++-.+.-++.+ +.....+...+  +...+..++..    ..+..+-.++.+++|+... +.
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~  142 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PP  142 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CC
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Cc
Confidence            34444444444445566777777666654 33333332222  24444444432    3477888899999999987 45


Q ss_pred             hHHHHHhc-C-ChHHHHhhhCCCC---cHHHHHHHHHHHHhhhhCCCCCC-CHHHHhhHHHHHHHhh-cC-CCHHHHHHH
Q psy9169         193 ARDLLLGL-G-TMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAP-DFEKIKICLPLLNQLI-HT-TDVETLSDI  264 (440)
Q Consensus       193 ~r~~i~~~-g-~i~~L~~ll~~~~---~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~ll-~~-~d~~i~~~a  264 (440)
                      .+..+... + .+...+..+....   +..++..++..+.|++....... ......+++..+.+.+ .. .|+++...+
T Consensus       143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~  222 (268)
T PF08324_consen  143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL  222 (268)
T ss_dssp             CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred             cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            55666643 2 3334444344332   57888888999999874321111 1222344566666633 33 689999999


Q ss_pred             HHHHHHhccCChhhHH
Q psy9169         265 CWALSYISDGHNDKIQ  280 (440)
Q Consensus       265 ~~~L~~l~~~~~~~~~  280 (440)
                      +-+++++...++....
T Consensus       223 LvAlGtL~~~~~~~~~  238 (268)
T PF08324_consen  223 LVALGTLLSSSDSAKQ  238 (268)
T ss_dssp             HHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHhccChhHHH
Confidence            9999999976665433

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=89.23  E-value=16  Score=32.91  Aligned_cols=135  Identities=18%  Similarity=0.242  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q psy9169         132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN--------LAEQATWALGNIAGDGARARDLLLGLGTM  203 (440)
Q Consensus       132 ~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~--------v~~~a~~~L~nl~~~~~~~r~~i~~~g~i  203 (440)
                      .....|+..|+.+-           +..+++.++++++.++.-        +.+....+|..+            ..|-+
T Consensus        57 ~~~~~a~~LLaq~r-----------e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv------------~~G~~  113 (249)
T PF06685_consen   57 NLHFYALYLLAQFR-----------EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV------------GDGDI  113 (249)
T ss_pred             HHHHHHHHHHHHHh-----------hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH------------hCCCH
Confidence            34455555555543           346899999999876531        222222233333            34567


Q ss_pred             HHHHhhhCCCC-cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CChhhHHH
Q psy9169         204 PQILALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD-GHNDKIQA  281 (440)
Q Consensus       204 ~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~-~~~~~~~~  281 (440)
                      +.|..++.++. +.-++..++.+|..+.... +...-..+.-+-..+-..+..++..+.......++.|.. ..-..+..
T Consensus       114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~-~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~  192 (249)
T PF06685_consen  114 EPLKELIEDPDADEYVRMAAISALAFLVHEG-PISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRK  192 (249)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHH
Confidence            88888888665 4567778888999999876 332222222222233333444444433333333333321 11233455


Q ss_pred             HHhcCChHH
Q psy9169         282 VVDTGVVPR  290 (440)
Q Consensus       282 l~~~g~~~~  290 (440)
                      +.+.|+++.
T Consensus       193 ~f~~~lVd~  201 (249)
T PF06685_consen  193 AFEDGLVDP  201 (249)
T ss_pred             HHHcCCCCc
Confidence            556666655

The function of this family is unknown.

>KOG2999|consensus

Probab=88.88  E-value=27  Score=34.97  Aligned_cols=156  Identities=13%  Similarity=0.135  Sum_probs=110.6

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc---HHHHHHHHHHHHhhhhCCCCCC
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP---TTFLRNIVWAISNLCRNKNPAP  237 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~  237 (440)
                      ...+...+.+++..-+..++.-|..++.+ +.+...++...++..|..++.++..   ..++...+.+++.+-......-
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            44566777777766666688889999888 5666778888889999999987653   4566666666666655431110


Q ss_pred             CHHHHhhHHHHHHHhh--cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         238 DFEKIKICLPLLNQLI--HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       238 ~~~~~~~~~~~L~~ll--~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      .. ....++..+..+.  +..+..+...|+..+-++..+++...+.+.+.--+..|+..+...+..++..|+..+..+..
T Consensus       164 ~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             ee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            00 0112233333333  33566788999999999999888777888888899999999999988888888877777665


Q ss_pred             CCh
Q psy9169         316 GND  318 (440)
Q Consensus       316 ~~~  318 (440)
                      ..+
T Consensus       243 ~a~  245 (713)
T KOG2999|consen  243 KAP  245 (713)
T ss_pred             hCC
Confidence            443

>KOG1949|consensus

Probab=88.88  E-value=22  Score=36.68  Aligned_cols=201  Identities=9%  Similarity=0.065  Sum_probs=115.0

Q ss_pred             HHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC--cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy9169         110 IDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT--SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI  186 (440)
Q Consensus       110 ~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~--~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl  186 (440)
                      ...-++.|++..++..- ..+.+.+-...-.+|+..+...  ....+.++--=.=|.|..-|+.+|..|+..|+..+.++
T Consensus       122 L~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~  201 (1005)
T KOG1949|consen  122 LLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEA  201 (1005)
T ss_pred             hHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHh
Confidence            45556778888777654 3333222222223333333210  11111222112335566677788999999999999998


Q ss_pred             hC-CCc----hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCCCHHH
Q psy9169         187 AG-DGA----RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVET  260 (440)
Q Consensus       187 ~~-~~~----~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~d~~i  260 (440)
                      -- .+|    +..+.+++. -...|..+|.++- +.++..++.-++.+...--.-....++..++..+..-+ ..+..++
T Consensus       202 fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~-p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~V  279 (1005)
T KOG1949|consen  202 FPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPY-PMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDV  279 (1005)
T ss_pred             ccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchhe
Confidence            72 112    223444433 3567888888776 67777666655554432211122233444555554433 3455689


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      +.+....|-++..++...  .+++. ++|++-..|.+.+..|+.++...|..|-.
T Consensus       280 R~svf~gl~~~l~np~sh--~~le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  280 RCSVFKGLPMILDNPLSH--PLLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             ehhHhcCcHHHHcCccch--hHHHH-HHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            999999999998766432  22222 25566666677788899988888877643

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=88.86  E-value=7.6  Score=30.76  Aligned_cols=101  Identities=15%  Similarity=0.109  Sum_probs=61.5

Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHHHHHHhhcCcchHHHHHHHHc
Q psy9169         304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGELNQMALLVEES  382 (440)
Q Consensus       304 ~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~~~~~i~~~~~~~~~~~l~~~  382 (440)
                      ...+.-|.+++..+......     +.+.|.+-|++.++.|+..+..+|-+++.. ++.....+-..   ......+.+.
T Consensus        19 gy~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~---~~~Ik~~~~f   90 (122)
T cd03572          19 GYLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN---SAQIRECANY   90 (122)
T ss_pred             hHHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh---HHHHHHHHHc
Confidence            34445566666665444443     456788888888899999999999999974 54443333220   0011112222


Q ss_pred             Cc-HHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169         383 GG-LEKLEALQHHENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       383 g~-l~~l~~L~~~~~~~v~~~a~~il~~~~~~~  414 (440)
                      .| .+.+.  -...+..|+..|.++++-.|+++
T Consensus        91 ~g~~Dp~~--Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          91 KGPPDPLK--GDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             CCCCCccc--CcchhHHHHHHHHHHHHHHhccC
Confidence            22 22222  12346689999999999999865

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=88.82  E-value=8.7  Score=36.65  Aligned_cols=213  Identities=15%  Similarity=0.127  Sum_probs=109.6

Q ss_pred             HHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q psy9169         114 IEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR  192 (440)
Q Consensus       114 i~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  192 (440)
                      +...++..|..++ +..++......+.+|..-...-    ..-+...++..+.+=+++..+.+|...+..++.+......
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            3445677777777 6666666666666665543221    0112234566677777777777998888888888751111


Q ss_pred             hHHHHHhcCChHHHHhhhC----CCCc----HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH--------HHHH---Hhh
Q psy9169         193 ARDLLLGLGTMPQILALVQ----PNTP----TTFLRNIVWAISNLCRNKNPAPDFEKIKICL--------PLLN---QLI  253 (440)
Q Consensus       193 ~r~~i~~~g~i~~L~~ll~----~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~--------~~L~---~ll  253 (440)
                      ....-....+++.|+..++    +...    ..+...+  ++..+.....+....  .....        |.++   +++
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~--~~l~~~~~~~~~~~~--~~~~~~~l~~~~kps~ll~~kvy  170 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAY--VLLALSSWKLDKIDS--KNISFWSLALDPKPSFLLSEKVY  170 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHH--HHHHhccccchhhhh--hhhhhhhhccCCCcchhcCHHHH
Confidence            1112223456777777775    2221    1121111  111121111010000  00000        0000   112


Q ss_pred             cC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCH
Q psy9169         254 HT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGL  330 (440)
Q Consensus       254 ~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l  330 (440)
                      .. .+++.....+.++..+..+.......-........++.++.++  ...+|..|+.++..+...++..    +...++
T Consensus       171 skl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li  246 (339)
T PF12074_consen  171 SKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLI  246 (339)
T ss_pred             hccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHH
Confidence            22 3445555566666655544332211111233467788888887  7899999999999999888864    223344


Q ss_pred             HHHHHHhc
Q psy9169         331 QKMKKLLS  338 (440)
Q Consensus       331 ~~L~~ll~  338 (440)
                      ..+-..+.
T Consensus       247 ~~l~~~l~  254 (339)
T PF12074_consen  247 SGLWKWLS  254 (339)
T ss_pred             HHHHHHHH
Confidence            55555554

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG2005|consensus

Probab=88.73  E-value=12  Score=38.22  Aligned_cols=145  Identities=10%  Similarity=0.093  Sum_probs=79.2

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..++..+-+.+.++++.+..-|+-.+.-.-++-.+. +     .-++..|...+.+++..++..++.-|+-.-+++.  +
T Consensus       414 d~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne-~-----dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq--~  485 (878)
T KOG2005|consen  414 DKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE-C-----DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ--R  485 (878)
T ss_pred             hhhHHHHHHHhhcCCchhhhccceeeeeeccccccc-c-----CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc--h
Confidence            345666666666666666555544443221111110 0     0134456667788888899888888887766533  3


Q ss_pred             HHHHhcCCHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      +.+.     ..|..++.+.+  .++..-|..+||.+...+...   -+...+++.++.--.........+-....|.-+.
T Consensus       486 e~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~---dvts~ilqtlmekse~El~d~~~RFL~LGL~llf  557 (878)
T KOG2005|consen  486 EEVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNE---DVTSSILQTLMEKSETELEDQWFRFLALGLALLF  557 (878)
T ss_pred             HHHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCCh---HHHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHH
Confidence            3332     25666666655  567777888888887443221   1122234444443332223445555556666666


Q ss_pred             hCC
Q psy9169         231 RNK  233 (440)
Q Consensus       231 ~~~  233 (440)
                      .++
T Consensus       558 lgk  560 (878)
T KOG2005|consen  558 LGK  560 (878)
T ss_pred             hcc
Confidence            555

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=88.56  E-value=11  Score=36.36  Aligned_cols=128  Identities=14%  Similarity=0.183  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCchh-----------
Q psy9169         131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS------SPHLNLAEQATWALGNIAGDGARA-----------  193 (440)
Q Consensus       131 ~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~-----------  193 (440)
                      ..-+..|+..|..++.........++    ...+-.+|.      +.+..-++.|+..++.|+......           
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v  300 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV  300 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence            34567788888888854222222222    222333332      344788899999999999544221           


Q ss_pred             -HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q psy9169         194 -RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL  268 (440)
Q Consensus       194 -r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L  268 (440)
                       -..++...++|.|.  -..+..+-++..|++.+..+-..-    ......+++|.++.+|.+++.-+...|+.++
T Consensus       301 ~v~~Ff~~~v~peL~--~~~~~~piLka~aik~~~~Fr~~l----~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  301 DVVDFFSQHVLPELQ--PDVNSHPILKADAIKFLYTFRNQL----PKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             -HHHHHHHHTCHHHH---SS-S-HHHHHHHHHHHHHHGGGS-----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             cHHHHHHHHhHHHhc--ccCCCCcchHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence             13344455566555  122334667888999888777553    3456788999999999999988888888765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2933|consensus

Probab=88.50  E-value=2.1  Score=39.35  Aligned_cols=141  Identities=12%  Similarity=0.112  Sum_probs=91.3

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE  240 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  240 (440)
                      +...+..|.+.+.+....++..|..++...++.....+. ..|..+++-+++.. ..+-+.+|.++..++...+...   
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlR-S~VsraA~~t~~difs~ln~~i---  164 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLR-SAVSRAACMTLADIFSSLNNSI---  164 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHH---
Confidence            334455566666666667777777777554443333322 24455556666655 7899999999999998763321   


Q ss_pred             HHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         241 KIKICLPLLNQLIHT---TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       241 ~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                       ....-..+..|+..   ++.-++.+|-.+|..++.+-...       -+++.|+..+.+.++.++..++.+..+.+
T Consensus       165 -~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  165 -DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             -HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence             12233333444433   34568999999999888665432       24788888899999999888887776654

>KOG4464|consensus

Probab=88.24  E-value=17  Score=35.00  Aligned_cols=154  Identities=16%  Similarity=0.139  Sum_probs=96.2

Q ss_pred             HHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----------CCCHHHHHHHHHHHHHhcc
Q psy9169         204 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----------TTDVETLSDICWALSYISD  273 (440)
Q Consensus       204 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----------~~d~~i~~~a~~~L~~l~~  273 (440)
                      ..+..+|.++.....+..++.++.-|++.+ .........+.+..|..+-.          ..|..++..++.+|+|+..
T Consensus        48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk-~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf  126 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVRILSRDK-DGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF  126 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHHHHhccc-cccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence            445555555554555666667777777776 33333333444444444331          2355899999999999999


Q ss_pred             CChhhHHHHHhcCChHHHHHhccCC-----ChhHHHHHHHHHHHhhc-CChHHHHHHHHcCCHHHHHHHhcCC---C---
Q psy9169         274 GHNDKIQAVVDTGVVPRLVELLDSE-----ETTILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMKKLLSSS---R---  341 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~lL~~~-----~~~v~~~al~~L~nl~~-~~~~~~~~l~~~g~l~~L~~ll~~~---~---  341 (440)
                      ++....+..+.......+.+.+...     ...+...=++.|--+.. ..+...+.+.+.++++.+.+.+.+.   +   
T Consensus       127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~  206 (532)
T KOG4464|consen  127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI  206 (532)
T ss_pred             ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence            9998878888887777777766321     11233333333333333 2244556777889999999998653   1   


Q ss_pred             ---------hhHHHHHHHHHHHHhcC
Q psy9169         342 ---------VNIVKEAAWTISNITAG  358 (440)
Q Consensus       342 ---------~~i~~~a~~~L~nl~~~  358 (440)
                               .+...+|..++.|++..
T Consensus       207 n~~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  207 NVPPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhheeec
Confidence                     13556788888898864

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=88.13  E-value=15  Score=38.64  Aligned_cols=138  Identities=15%  Similarity=0.160  Sum_probs=100.3

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..|..|+.+|.|.+..+...+-..+...+.....+        -++..|+++. .+.+.    .++.+|..+  ..|.. 
T Consensus         4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~l~~y~~~t~s~----~~~~il~~~--~~P~~-   68 (668)
T PF04388_consen    4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP--------WLVNGLVDYYLSTNSQ----RALEILVGV--QEPHD-   68 (668)
T ss_pred             ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--------HHHHHHHHHHhhcCcH----HHHHHHHhc--CCccH-
Confidence            45889999999999999998888888887665422        1366677766 44332    344555544  22321 


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                           ...+..|-.++..+  .-|-.++..|+.+....+..-..+.+...++.|+..|..+.+..++..|+.+|.-|.-.
T Consensus        69 -----K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~  141 (668)
T PF04388_consen   69 -----KHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH  141 (668)
T ss_pred             -----HHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence                 13455566666654  56778999999999887877788889999999999999888888888888888877754


Q ss_pred             C
Q psy9169         233 K  233 (440)
Q Consensus       233 ~  233 (440)
                      -
T Consensus       142 i  142 (668)
T PF04388_consen  142 I  142 (668)
T ss_pred             c
Confidence            3

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>KOG1848|consensus

Probab=87.61  E-value=10  Score=41.99  Aligned_cols=59  Identities=19%  Similarity=0.135  Sum_probs=33.6

Q ss_pred             HHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         348 AAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       348 a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                      .+.+|+-|+.--+++...+..+.   .+....++  .++.+..+..+.++++.-.|...+++..
T Consensus      1073 ~~ltisgIaklf~e~fk~llnln---~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1073 SCLTISGIAKLFSENFKLLLNLN---GFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcc---cHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            56666666654444433333321   11111111  2556667777888999888888877763

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=86.65  E-value=23  Score=31.71  Aligned_cols=201  Identities=14%  Similarity=0.182  Sum_probs=113.8

Q ss_pred             HHHHH-HhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          77 PEMIE-GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        77 ~~lv~-~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      +.++. .-+..++..+...+..|-.+.+.+. .....     ++..+..+...+..+.+.-+...+..+...++..-   
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            33444 3446788999999999998876552 22222     34455555566666677778888888876544322   


Q ss_pred             HhcCCHHHHHHh--------hCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169         156 INANAIPKFLQL--------LSS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA  225 (440)
Q Consensus       156 ~~~g~i~~L~~l--------L~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (440)
                         +.+..++..        ..+  ...+.......++..+|...|+.     ....++.+..++....++.....++.+
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~-----g~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH-----GVDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh-----HHHHHHHHHHHHhccccHHHHHHHHHH
Confidence               333433333        011  11344445567888888776662     223577888888433337889999999


Q ss_pred             HHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhh-HHHHHhcCChHHHHHhccCCC
Q psy9169         226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDK-IQAVVDTGVVPRLVELLDSEE  299 (440)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~-~~~l~~~g~~~~Lv~lL~~~~  299 (440)
                      +..||...     ..........+..-+.. ..+.+....|..+..+..+.-+. ........++..+-++..+.+
T Consensus       146 l~~Lc~~~-----vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  146 LAPLCEAE-----VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHHh-----hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            99999553     22234444455554443 34566665555555444332211 112233445555555555544

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=86.40  E-value=26  Score=32.01  Aligned_cols=219  Identities=17%  Similarity=0.172  Sum_probs=128.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCC--CCc-HHHHHH------h-CCHHHHHHhc--cCCChHHHHHHHHHHHHHh
Q psy9169          78 EMIEGMKSSNPKMRMIATRSARKMLSKER--HPP-IDELIE------A-GVVPICVELL--DDENPNTQFEATWALTNIA  145 (440)
Q Consensus        78 ~lv~~L~s~~~~~~~~a~~~l~~lls~~~--~~~-~~~ii~------~-g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla  145 (440)
                      .-+..|.+..+..-..|+..+.+++..-+  ++. .+.+.+      . |..+.+..++  .--++.....++.+|..++
T Consensus        11 ~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~   90 (262)
T PF14225_consen   11 TAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLT   90 (262)
T ss_pred             HHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHh
Confidence            34667778778788888888887776432  111 122211      1 4445555544  1122344455666666665


Q ss_pred             CC-------CcHHHHHHHhcCCHHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--
Q psy9169         146 SG-------TSEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP--  212 (440)
Q Consensus       146 ~~-------~~~~~~~i~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~--  212 (440)
                      ..       .++.+-.+.-.+.+|.++.-+.+++    ......++..|+.+|....        .+.+..++.....  
T Consensus        91 ~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~  162 (262)
T PF14225_consen   91 PLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGR  162 (262)
T ss_pred             cCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcC
Confidence            43       2222333333456788888888777    1344567788888874311        1223333333332  


Q ss_pred             -CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHH
Q psy9169         213 -NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL  291 (440)
Q Consensus       213 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~L  291 (440)
                       .+..+..+.++..|..-+.   |    .....++..+..+|.+.-+.++..++.+|..+...-+-...  ...+++.++
T Consensus       163 fr~~~dfl~~v~~~l~~~f~---P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispl  233 (262)
T PF14225_consen  163 FRDKDDFLSQVVSYLREAFF---P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPL  233 (262)
T ss_pred             CCCHHHHHHHHHHHHHHHhC---c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHH
Confidence             2234566666655554321   1    12355777788999888899999999999998866553322  556788999


Q ss_pred             HHhccCCChhHHHHHHHHHHHhhcC
Q psy9169         292 VELLDSEETTILTAALRTVGNIATG  316 (440)
Q Consensus       292 v~lL~~~~~~v~~~al~~L~nl~~~  316 (440)
                      .++|..+   ....|+.+|-+++..
T Consensus       234 lrlL~t~---~~~eAL~VLd~~v~~  255 (262)
T PF14225_consen  234 LRLLQTD---LWMEALEVLDEIVTR  255 (262)
T ss_pred             HHHhCCc---cHHHHHHHHHHHHhh
Confidence            9999765   466777777766543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.36  E-value=16  Score=30.74  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhc--CCHHHHHHhhCCCC-HHHHHHHHHHHHHhh---CCC
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINA--NAIPKFLQLLSSPH-LNLAEQATWALGNIA---GDG  190 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~--g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~---~~~  190 (440)
                      ..+..+..+|.+.++.-+..++..+.-.+..++  .+.+.+.  --+..++.+|+.++ ..+.+.++.+|..|.   .+.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            356677788888889999888888888775432  2333333  35778888888866 677888888888877   344


Q ss_pred             chhHHHHHh---cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         191 ARARDLLLG---LGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       191 ~~~r~~i~~---~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      ++....+..   .++++.++.++..   ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence            553333332   2344555555543   34556666666666654

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=86.23  E-value=3.1  Score=34.06  Aligned_cols=75  Identities=13%  Similarity=0.096  Sum_probs=60.4

Q ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhC
Q psy9169          72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIAS  146 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~  146 (440)
                      ....+..|.+.|+++++.+|+.|+..+-.++.....+....+...+.+..|+.++ ...++.++..++..+...+.
T Consensus        39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            3467888899999999999999999998887654534456777889999999998 56777899888888877763

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.20  E-value=13  Score=32.71  Aligned_cols=98  Identities=8%  Similarity=0.107  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-----ChhHHHHHHHHHHHhhcCCh-HHHHHHHHcCCHHHHH
Q psy9169         261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-----ETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKMK  334 (440)
Q Consensus       261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-----~~~v~~~al~~L~nl~~~~~-~~~~~l~~~g~l~~L~  334 (440)
                      ...++..|..++.++. ....++++.+--.+..+|...     -..++..++..||.++.+++ .....+....++|.+.
T Consensus       117 vcnaL~lLQclaShPe-tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASHPE-TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcCcc-hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            3445555555665554 446677776555555555322     23578899999999998655 4566778889999999


Q ss_pred             HHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169         335 KLLSSSRVNIVKEAAWTISNITAGN  359 (440)
Q Consensus       335 ~ll~~~~~~i~~~a~~~L~nl~~~~  359 (440)
                      ++++.+++--+.-|++++.-+..+.
T Consensus       196 rIme~gSElSktvaifI~qkil~dD  220 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDD  220 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccc
Confidence            9999998877888888888877543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=85.86  E-value=7.8  Score=32.45  Aligned_cols=145  Identities=10%  Similarity=0.126  Sum_probs=76.5

Q ss_pred             CCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169         159 NAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP  237 (440)
Q Consensus       159 g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  237 (440)
                      ..++.|+.+|+.+. ..+|..++.+||.|..-+|...+.+....  +   ..-.............     +..+..+..
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~---~~~~~~~~~~~~~~~l-----~~~~~~~~~   79 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--D---SKSSENSNDESTDISL-----PMMGISPSS   79 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--C---ccccccccccchhhHH-----hhccCCCch
Confidence            45678888888764 89999999999999877676544222111  1   0000000011111111     111111222


Q ss_pred             CHHHHhhHHHHHHHhhcCCC-HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         238 DFEKIKICLPLLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       238 ~~~~~~~~~~~L~~ll~~~d-~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      +......++..|...|++.. ..-...++.++.++........-..+ ..++|.++..+...+...++..+.-|+.|+
T Consensus        80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            33334556677777776543 22233455555555422211111111 346888888888776677777777777665

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG0413|consensus

Probab=85.77  E-value=3.6  Score=43.61  Aligned_cols=131  Identities=15%  Similarity=0.138  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHh
Q psy9169         173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL  252 (440)
Q Consensus       173 ~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  252 (440)
                      +.++.+++-+|+++|-.....     ....+|.|++-|..++...++.+..-++..+|...     .......+|.+...
T Consensus       945 ~~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHH
Confidence            457889999999999442222     23468999999998887888888888888888653     12346689999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC
Q psy9169         253 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN  317 (440)
Q Consensus       253 l~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~  317 (440)
                      |.++++-++..++-.|.+|....--..    +..++-+++-.|-+.+++++..|=.+++.+....
T Consensus      1015 L~Dp~~iVRrqt~ilL~rLLq~~~vKw----~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVKW----NGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhhhhhc----chhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999986543221    1123334444455567789999999999887643

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=85.71  E-value=3.4  Score=33.89  Aligned_cols=75  Identities=11%  Similarity=0.121  Sum_probs=61.7

Q ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC-CChHHHHHHHHHHHHHhC
Q psy9169          72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIAS  146 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~-~~~~i~~~a~~~L~nla~  146 (440)
                      ....+..|.+.|.+.++.+++.|+..+-.+....+.....++.....+..|+.++.. .++.++..++..+...+.
T Consensus        35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            456788889999999999999999999988766554445678888999999999944 788999998888888764

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=85.21  E-value=13  Score=29.97  Aligned_cols=94  Identities=12%  Similarity=0.072  Sum_probs=67.4

Q ss_pred             CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHH
Q psy9169         255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKM  333 (440)
Q Consensus       255 ~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L  333 (440)
                      .+|..+....|..+..-..+..         .++..|.+-|.++++.++..|+..|--++.+... ....+.+...+..|
T Consensus        15 ~~D~~~il~icd~I~~~~~~~k---------~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l   85 (133)
T cd03561          15 EPDWALNLELCDLINLKPNGPK---------EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL   85 (133)
T ss_pred             CccHHHHHHHHHHHhCCCCCHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence            3555666666666643321111         2367788889999999999999999999876654 55556665778889


Q ss_pred             HHHhcCC---ChhHHHHHHHHHHHHhc
Q psy9169         334 KKLLSSS---RVNIVKEAAWTISNITA  357 (440)
Q Consensus       334 ~~ll~~~---~~~i~~~a~~~L~nl~~  357 (440)
                      ..++...   ++.++..+.-.+.+.+.
T Consensus        86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          86 VKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9998753   56899998888888774

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.15  E-value=4.9  Score=35.19  Aligned_cols=143  Identities=10%  Similarity=0.087  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-----cCCChHHHHHHHHHHHHHhCCCc-HHHHHHHhcCCH
Q psy9169          88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-----DDENPNTQFEATWALTNIASGTS-EQTMTVINANAI  161 (440)
Q Consensus        88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-----~~~~~~i~~~a~~~L~nla~~~~-~~~~~i~~~g~i  161 (440)
                      ..-...|+..+.-++|...  ....++++.+--.+..+|     .+....+|..++.+++.+...++ .....+....++
T Consensus       114 snRvcnaL~lLQclaShPe--tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeiv  191 (315)
T COG5209         114 SNRVCNALNLLQCLASHPE--TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIV  191 (315)
T ss_pred             hhHHHHHHHHHHHHhcCcc--hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHH
Confidence            3445566666665655432  344555665444444555     23345688899999999976544 455567788999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh-------cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         162 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG-------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       162 ~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~-------~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      |..++.+..+++--+..|+.+++.+.+++....-....       ...+..++..+-+..+..+.++++.+...||..
T Consensus       192 PLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            99999999998888888999999998775433221111       112233333332333356677777776666654

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=84.90  E-value=7.3  Score=31.88  Aligned_cols=75  Identities=16%  Similarity=0.110  Sum_probs=60.7

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      .++..|.+-|.+.++.++-.|+..|-.+..+ +..+...+...+++..|..++....+..++..++..+..-+..-
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            4566777788888899999999988888876 35577888888999999999987666888888888888776543

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=84.36  E-value=3.9  Score=37.53  Aligned_cols=132  Identities=14%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             CcHHHHHHHHHHHHhhhhCCCCCCCHHHH-h--hHHHHHHHhhcCC---CHHHHHHHHHHHHHhccCChhhH-HHHHhcC
Q psy9169         214 TPTTFLRNIVWAISNLCRNKNPAPDFEKI-K--ICLPLLNQLIHTT---DVETLSDICWALSYISDGHNDKI-QAVVDTG  286 (440)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~--~~~~~L~~ll~~~---d~~i~~~a~~~L~~l~~~~~~~~-~~l~~~g  286 (440)
                      .+...+--++.+++|+..+. ........ .  .++..+..+....   +..++..++..+.|++....... ..-....
T Consensus       122 ~~~~~~ml~lR~l~NlF~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~  200 (268)
T PF08324_consen  122 SPPANQMLALRLLANLFSHP-PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE  200 (268)
T ss_dssp             SSHHHHHHHHHHHHHHTTSC-CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred             CcHHHHHHHHHHHHHhhCCC-ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            45677778999999999876 32222211 1  2333333333332   67899999999999873211100 0001112


Q ss_pred             ChHHHHHhccC--CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC-CChhHHH
Q psy9169         287 VVPRLVELLDS--EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVK  346 (440)
Q Consensus       287 ~~~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~  346 (440)
                      ++..+++.+..  .+++....++-++|+++..++...+.....|+-..+...... .++.++.
T Consensus       201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~  263 (268)
T PF08324_consen  201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKE  263 (268)
T ss_dssp             HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHH
Confidence            35666664432  578999999999999998776655544444555555544432 3444444

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=84.35  E-value=18  Score=33.49  Aligned_cols=138  Identities=15%  Similarity=0.225  Sum_probs=75.9

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH-HHHHhcCCHHHH----HHhhC--------CCCHHHHHHHHHHH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MTVINANAIPKF----LQLLS--------SPHLNLAEQATWAL  183 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~-~~i~~~g~i~~L----~~lL~--------~~~~~v~~~a~~~L  183 (440)
                      =++|.++.++.+.++.++..++.+|..+....+... ..+...|..+.+    ..+|.        .+...+...+.-+|
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            368999999988899999999999999987644433 235566655544    33333        23366777778888


Q ss_pred             HHhhC----CCchhHH----HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC
Q psy9169         184 GNIAG----DGARARD----LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT  255 (440)
Q Consensus       184 ~nl~~----~~~~~r~----~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~  255 (440)
                      ..++.    +....|.    .++..|++..+..... .....+....+..+..+...- ........+.+++.+.+.+.+
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~-~~~~~l~~~ll~~l~~~i~~l-Gi~~~~hL~rii~~l~~~l~n  276 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESS-FSYPRLRTVLLQQLPPIIDEL-GISSVKHLQRIIPVLSQILEN  276 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccc-cCchhHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcC
Confidence            77742    1111122    2222223222222211 112455555555555555432 111222345666666665554


Q ss_pred             C
Q psy9169         256 T  256 (440)
Q Consensus       256 ~  256 (440)
                      .
T Consensus       277 p  277 (282)
T PF10521_consen  277 P  277 (282)
T ss_pred             C
Confidence            3

>PF11538 Snurportin1: Snurportin1; InterPro: IPR024721 Snurportin-1 is a nuclear import receptor that contains an N-terminal importin beta binding domain which is essential for its function as an snRNP-specific nuclear import receptor []

Probab=84.17  E-value=0.67  Score=28.41  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=23.4

Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q psy9169           9 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRR   48 (440)
Q Consensus         9 ~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR   48 (440)
                      .|...||+++...++-+  |.+...++-|.+|-+.++.-|
T Consensus         2 PR~sqYK~~~~~~~Q~e--RR~~~Le~QK~kR~d~~~~aR   39 (40)
T PF11538_consen    2 PRLSQYKNKGSALDQEE--RRREFLERQKNKRLDYVNHAR   39 (40)
T ss_dssp             TTCSCTT-TTTSCSHHH--HHHHHHHHHHSHHSHHHHHHH
T ss_pred             ccHHHhhcccchHhHHH--HHHHHHHHHHHHhHHHHHhcc
Confidence            47788999865444433  334567777888876665433

Snurportin-1 interacts with m3G-cap where it enhances the m3G-cap dependent nuclear import of U snRNPs in Xenopus laevis oocytes and digitonin-permeabilized HeLa cells []. This entry represents the snurportin-1 N-terminal importin beta binding domain (IBB). The essential role of the IBB domain for snurportin-1 function suggests that snurportin-1 cooperates with importin beta in mediating nuclear import of snRNPs.; GO: 0005515 protein binding; PDB: 3LWW_D 3NC0_E 3NBZ_E 2Q5D_C 3NBY_B 3GB8_B 3GJX_B 2QNA_B 2P8Q_B.

>KOG3132|consensus

Probab=84.07  E-value=0.56  Score=40.98  Aligned_cols=47  Identities=23%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccc
Q psy9169           9 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEI   56 (440)
Q Consensus         9 ~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~   56 (440)
                      .|...||+.-.++++..|||++ .++|.|++|.+...+-|++..++-+
T Consensus        25 pR~sQykn~~s~aeQ~arrr~~-llelQks~r~D~~~~~r~lA~dd~t   71 (325)
T KOG3132|consen   25 PRQSQYKNLTSDAEQRARRRAS-LLELQKSSRPDVDPEIRSLAVDDLT   71 (325)
T ss_pred             chhhhhhhhhhHHHHHHHHHHH-HHHhhhcCCCCccHHHHhhcccccc
Confidence            6999999987666555555544 9999999999998888888765443

>KOG1788|consensus

Probab=83.98  E-value=49  Score=36.11  Aligned_cols=256  Identities=14%  Similarity=0.143  Sum_probs=143.4

Q ss_pred             HHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC--
Q psy9169          95 TRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--  172 (440)
Q Consensus        95 ~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~--  172 (440)
                      ..++..++.... .+...+.+..++..++.++  -+.+-|...+.++..+....+.+..    ..-+-.++..|++.-  
T Consensus       663 wDcLisllKnnt-eNqklFreanGvklilpfl--indehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt  735 (2799)
T KOG1788|consen  663 WDCLISLLKNNT-ENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVT  735 (2799)
T ss_pred             HHHHHHHHhccc-hhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhccee
Confidence            345555554433 5567777888888888888  2334455555555555544443211    122344566665521  


Q ss_pred             ----------HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC---------CCcHHHHHHHHHHH---Hh--
Q psy9169         173 ----------LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP---------NTPTTFLRNIVWAI---SN--  228 (440)
Q Consensus       173 ----------~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~---------~~~~~~~~~a~~~L---~~--  228 (440)
                                ..+....+.+++.+.+.+-..+..+.+.+++..|+..|..         ..+..+-......|   ..  
T Consensus       736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla  815 (2799)
T KOG1788|consen  736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA  815 (2799)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence                      2455567788888887777777778888888888777641         11111111111111   11  


Q ss_pred             hhhCCCCCCCH--HHHh----------h---------HHHHHH----HhhcCCCHHHHHHHHHHHHHhccC---------
Q psy9169         229 LCRNKNPAPDF--EKIK----------I---------CLPLLN----QLIHTTDVETLSDICWALSYISDG---------  274 (440)
Q Consensus       229 l~~~~~~~~~~--~~~~----------~---------~~~~L~----~ll~~~d~~i~~~a~~~L~~l~~~---------  274 (440)
                      +|.+......+  .+..          +         ++..+.    +.+-+++-.--..||..+..+-++         
T Consensus       816 vcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsG  895 (2799)
T KOG1788|consen  816 VCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSG  895 (2799)
T ss_pred             HhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCC
Confidence            22222111100  0000          1         111111    111222222234455554443321         


Q ss_pred             -ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC---CChhHHHHHHH
Q psy9169         275 -HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS---SRVNIVKEAAW  350 (440)
Q Consensus       275 -~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~---~~~~i~~~a~~  350 (440)
                       .....+.+..+|++..|+..+-...+.++..-++.+..++..++.....+-..|.++.|+.++..   +....-..+..
T Consensus       896 qfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalk  975 (2799)
T KOG1788|consen  896 QFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALK  975 (2799)
T ss_pred             CcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHH
Confidence             11234678899999999999888888999999999999999998888888888998888887642   23334444445


Q ss_pred             HHHHHhc
Q psy9169         351 TISNITA  357 (440)
Q Consensus       351 ~L~nl~~  357 (440)
                      ++..+++
T Consensus       976 IvemLga  982 (2799)
T KOG1788|consen  976 IVEMLGA  982 (2799)
T ss_pred             HHHHHhh
Confidence            5555543

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=83.70  E-value=25  Score=30.24  Aligned_cols=123  Identities=14%  Similarity=0.084  Sum_probs=78.6

Q ss_pred             HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHH
Q psy9169         241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ  320 (440)
Q Consensus       241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~  320 (440)
                      .....++.+.++..+.+..++..|+..+..+....=..  .   ..++|.|+.+..++++.++..|...+..+....+..
T Consensus         5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn--P---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN--P---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC--h---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            34667888888888999999999999998777432110  0   135899999999999999999999999998777655


Q ss_pred             HHHHHHcCCHHHHHHHh---cCCChhH---HHHHHHHHHHHhcCChHHHHHHhh
Q psy9169         321 TDCVIQAGGLQKMKKLL---SSSRVNI---VKEAAWTISNITAGNSRQIDHVIQ  368 (440)
Q Consensus       321 ~~~l~~~g~l~~L~~ll---~~~~~~i---~~~a~~~L~nl~~~~~~~~~~~i~  368 (440)
                      ...=...|+-....-..   .+.....   .......+..+..++..+...++.
T Consensus        80 v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~  133 (187)
T PF12830_consen   80 VESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK  133 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH
Confidence            44333334322222111   1111111   334445555666666665555543

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=83.03  E-value=42  Score=31.58  Aligned_cols=154  Identities=12%  Similarity=0.076  Sum_probs=80.8

Q ss_pred             ChHHHHHHHHHHHHHhCCCcHHHHHHHhcC-----------CHHHHHHhhC------CCCHHHHHHHHHHHHHhhCCCch
Q psy9169         130 NPNTQFEATWALTNIASGTSEQTMTVINAN-----------AIPKFLQLLS------SPHLNLAEQATWALGNIAGDGAR  192 (440)
Q Consensus       130 ~~~i~~~a~~~L~nla~~~~~~~~~i~~~g-----------~i~~L~~lL~------~~~~~v~~~a~~~L~nl~~~~~~  192 (440)
                      .-.+|..|+.|+..+..++++.+..+++.-           ....|+..|-      +.++.-.--|+.+|..+..+++.
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~  130 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE  130 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence            557899999999999999888887775321           1112333333      22232334456666666666666


Q ss_pred             hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----c-CCCHHHHHHHHHH
Q psy9169         193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----H-TTDVETLSDICWA  267 (440)
Q Consensus       193 ~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~-~~d~~i~~~a~~~  267 (440)
                      .|+....-   +    ......                 +. +      ....++.+..+|    . ..++.+...-+..
T Consensus       131 ~Ke~al~V---~----~~~~~~-----------------ge-~------~vtliq~v~~lL~~~l~~~~d~ri~igyL~L  179 (312)
T PF04869_consen  131 AKEQALRV---T----EGDESS-----------------GE-E------PVTLIQTVSELLIASLRRNSDPRIQIGYLML  179 (312)
T ss_dssp             HHHHHTT---------EE--ST-----------------TS---------EEHHHHHHHHTTT----T--HHHHHHHHHH
T ss_pred             HHHHHHcc---c----CCCCCC-----------------CC-C------cccHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence            55544321   0    000000                 00 0      111333333333    2 4567777777777


Q ss_pred             HHHhccCChhhHHHHHhc-CChHHHHHhccCC---ChhHHHHHHHHHHHhh
Q psy9169         268 LSYISDGHNDKIQAVVDT-GVVPRLVELLDSE---ETTILTAALRTVGNIA  314 (440)
Q Consensus       268 L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~~---~~~v~~~al~~L~nl~  314 (440)
                      |+....+++..+..+++. +.++.|+......   +.-|+--++..||-..
T Consensus       180 L~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy  230 (312)
T PF04869_consen  180 LIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY  230 (312)
T ss_dssp             HHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence            777777777777777766 5888888875332   3456656666666543

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.86  E-value=18  Score=27.36  Aligned_cols=70  Identities=11%  Similarity=0.131  Sum_probs=56.9

Q ss_pred             HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHH
Q psy9169         326 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYK  405 (440)
Q Consensus       326 ~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~  405 (440)
                      ..+++..|+.....+....+.++.-.|..++.....              ...+.+.|+.+.+..+...-+++.+.....
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------~~~l~~iG~~~fL~klr~~~~~~~~~~id~   93 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------AQILRDIGAVRFLSKLRPNVEPNLQAEIDE   93 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------HHHHHHccHHHHHHHHHhcCCHHHHHHHHH
Confidence            345667777777777777888899999998876644              578889999999999999899999998888


Q ss_pred             HHHh
Q psy9169         406 IISM  409 (440)
Q Consensus       406 il~~  409 (440)
                      +++.
T Consensus        94 il~~   97 (98)
T PF14726_consen   94 ILDQ   97 (98)
T ss_pred             HHhc
Confidence            8865

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=82.83  E-value=45  Score=31.78  Aligned_cols=217  Identities=14%  Similarity=0.076  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC
Q psy9169         134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP  212 (440)
Q Consensus       134 ~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~  212 (440)
                      |...+.+|..+... +      +...++..|..++.. .++......+.+|+.-+...    ..-+...++..+..-+.+
T Consensus         4 r~~~~~~L~~l~~~-~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~   72 (339)
T PF12074_consen    4 RVLHASMLSSLPSS-S------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKD   72 (339)
T ss_pred             HHHHHHHHHhCCCc-c------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcC
Confidence            33444555555441 1      233455666666654 55666666666665544211    000112234455555555


Q ss_pred             CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----CCCHHHH---HHHHHHHHHhccCChhhHHH--H-
Q psy9169         213 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----TTDVETL---SDICWALSYISDGHNDKIQA--V-  282 (440)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----~~d~~i~---~~a~~~L~~l~~~~~~~~~~--l-  282 (440)
                      .. ..+++..+.++...+..............++|.|.+.++    ++-+...   ..++.++..++....+.+..  . 
T Consensus        73 kk-~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  151 (339)
T PF12074_consen   73 KK-PPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNIS  151 (339)
T ss_pred             CC-CcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhh
Confidence            44 458888888888777622122233445678888887773    2211111   11222221122111111111  0 


Q ss_pred             ---HhcCChHHHH---HhccC-CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHH
Q psy9169         283 ---VDTGVVPRLV---ELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTIS  353 (440)
Q Consensus       283 ---~~~g~~~~Lv---~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~  353 (440)
                         +-.+-=|.++   +++.. .+.+.....++++..+..+.+.....-.....-..++.++.++  .+.+|+.|.-++.
T Consensus       152 ~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~  231 (339)
T PF12074_consen  152 FWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALK  231 (339)
T ss_pred             hhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence               0000000000   11111 2334455566666666654433221111223566788888887  7899999999999


Q ss_pred             HHhcCChHH
Q psy9169         354 NITAGNSRQ  362 (440)
Q Consensus       354 nl~~~~~~~  362 (440)
                      .+....+..
T Consensus       232 ~l~~~~~~~  240 (339)
T PF12074_consen  232 KLYASNPEL  240 (339)
T ss_pred             HHHHhChHH
Confidence            999877763

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=82.77  E-value=3.8  Score=36.35  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHh-------CCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHH-HHHhcC
Q psy9169          89 KMRMIATRSARKMLSKERHPPIDELIEA-------GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTM-TVINAN  159 (440)
Q Consensus        89 ~~~~~a~~~l~~lls~~~~~~~~~ii~~-------g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~-~i~~~g  159 (440)
                      .-|..|+.++.|+.-.+.|  .+.++..       .++..|+++| ...++-.|+-|+-.|.+++.+++.... ...+.+
T Consensus       139 SPqrlaLEaLcKLsV~e~N--VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENN--VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhheeccC--cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            4588899999998655543  3444433       3456677777 778899999999999999998777664 456778


Q ss_pred             CHHHHHHhhCCCC
Q psy9169         160 AIPKFLQLLSSPH  172 (440)
Q Consensus       160 ~i~~L~~lL~~~~  172 (440)
                      .|..|+.++.+..
T Consensus       217 ~i~~Li~FiE~a~  229 (257)
T PF12031_consen  217 CISHLIAFIEDAE  229 (257)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999997654

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=82.27  E-value=8.3  Score=31.12  Aligned_cols=75  Identities=12%  Similarity=0.131  Sum_probs=58.5

Q ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc---CCChHHHHHHHHHHHHHhC
Q psy9169          72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD---DENPNTQFEATWALTNIAS  146 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~---~~~~~i~~~a~~~L~nla~  146 (440)
                      ....+..|.+.|+++++.+|+.|+..+-.++.....+....+.....+..|+.++.   ..++.++..++..+...+.
T Consensus        35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34668888899999999999999999988876655334456666677888999984   4577899888888887764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=81.68  E-value=6.5  Score=31.77  Aligned_cols=75  Identities=13%  Similarity=0.066  Sum_probs=57.2

Q ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC-CC-hHHHHHHHHHHHHHhC
Q psy9169          72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-EN-PNTQFEATWALTNIAS  146 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~-~~-~~i~~~a~~~L~nla~  146 (440)
                      ....+..|.+.|+++++.+++.|+..+-.++.....+....+...+.+..|+.++.. .+ +.++..++..+...+.
T Consensus        35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            346678888899999999999999999888766554445677778899999998833 33 3488888887777653

Unpublished observations. Domain of unknown function.

>KOG1822|consensus

Probab=81.47  E-value=1.2e+02  Score=35.60  Aligned_cols=231  Identities=15%  Similarity=0.120  Sum_probs=124.9

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHH---HHHHHHHHHhCCCc
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQF---EATWALTNIASGTS  149 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~---~a~~~L~nla~~~~  149 (440)
                      ..+..++..|...++..+..+..++..++..-+.++.    -++....++.-| ...++-.|.   .|+.+|.....+-.
T Consensus       876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f----~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~  951 (2067)
T KOG1822|consen  876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPF----VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIG  951 (2067)
T ss_pred             HHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccch----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCC
Confidence            3455566677788888888888888888754432221    122345555556 444554443   34444444433211


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC--cHHHHHHHHHHH
Q psy9169         150 EQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--PTTFLRNIVWAI  226 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L  226 (440)
                      ...   .-..++..+..+..+++ +.|+.-++.++.-+...+.... .+.....+..+..++.+..  ..++......++
T Consensus       952 s~q---hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~-~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen  952 SGQ---HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMF-RVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred             Cch---hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCcee-hhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence            111   11245677888888776 5999999999988885544333 2222233444444444221  233333333333


Q ss_pred             H------hhhh--CC----CCC--CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHH
Q psy9169         227 S------NLCR--NK----NPA--PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV  292 (440)
Q Consensus       227 ~------~l~~--~~----~~~--~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv  292 (440)
                      .      ++..  ++    +..  ........++-...-++.++|+.+...+..++-++--..+...   --.-+++.|.
T Consensus      1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~ 1104 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLC 1104 (2067)
T ss_pred             ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHH
Confidence            2      2222  11    111  1111223344445555677788899999999988875544221   1123467777


Q ss_pred             HhccCCChhHHHHHHHHHHHhhc
Q psy9169         293 ELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       293 ~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      .+|.++..-.+..++.++..++.
T Consensus      1105 ~~l~s~~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1105 SLLSSSYLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred             HHhcchhhhhhhhHHhhhhHHhH
Confidence            77776655555656666666554

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.04  E-value=7.4  Score=31.69  Aligned_cols=74  Identities=9%  Similarity=0.028  Sum_probs=58.3

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC------CChHHHHHHHHHHHHHhC
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------ENPNTQFEATWALTNIAS  146 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~------~~~~i~~~a~~~L~nla~  146 (440)
                      ...+..+.+.|++.++.+++.|+..+-.+...-.......+...+.+.-|+.++..      .++.++..++..+...+.
T Consensus        37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            45678889999999999999999999888765554445677778889999998842      467888888887777663

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=80.88  E-value=62  Score=32.14  Aligned_cols=217  Identities=14%  Similarity=0.239  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHh
Q psy9169          88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL  167 (440)
Q Consensus        88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~l  167 (440)
                      ...+..|+.+|..+++.-..+....+.+    +.|+.+|.+....-|..++-++...+.........-.-....+.|..+
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~  176 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI  176 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence            3567888999998877644333333322    268888888888888888889998886533221110012345667777


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC-----hHHHHhhhC---CC----CcHHHHHHHH-HHHHhhhhCCC
Q psy9169         168 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT-----MPQILALVQ---PN----TPTTFLRNIV-WAISNLCRNKN  234 (440)
Q Consensus       168 L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~-----i~~L~~ll~---~~----~~~~~~~~a~-~~L~~l~~~~~  234 (440)
                      |.++....-......+..+-.+....-..+...|.     +|.|-....   ..    -..+....++ ..+..+...-.
T Consensus       177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~  256 (441)
T PF12054_consen  177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS  256 (441)
T ss_pred             HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence            77443211111222222222221222222333343     233322222   00    0122222222 23333443332


Q ss_pred             CCCCH---HHH---h-hHHH---HHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHH
Q psy9169         235 PAPDF---EKI---K-ICLP---LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTIL  303 (440)
Q Consensus       235 ~~~~~---~~~---~-~~~~---~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~  303 (440)
                      +....   ...   . .+..   .....-..-+..+...++.++..+-.-++. .     .-+|..|++-++. .+..++
T Consensus       257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K-L-----nPiIrpLMdSIK~Een~~LQ  330 (441)
T PF12054_consen  257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK-L-----NPIIRPLMDSIKREENELLQ  330 (441)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-c-----cHHHHHHHHHhhccccHHHH
Confidence            22222   111   1 1111   111111234556777777777777654432 2     2346677777754 467888


Q ss_pred             HHHHHHHHHhh
Q psy9169         304 TAALRTVGNIA  314 (440)
Q Consensus       304 ~~al~~L~nl~  314 (440)
                      ..+..+|+.|.
T Consensus       331 ~rsA~slA~Li  341 (441)
T PF12054_consen  331 QRSAESLARLI  341 (441)
T ss_pred             HHHHHHHHHHH
Confidence            88888888775

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG2005|consensus

Probab=80.31  E-value=52  Score=33.89  Aligned_cols=74  Identities=18%  Similarity=0.298  Sum_probs=47.9

Q ss_pred             hHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh-HHHHHH
Q psy9169         288 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHV  366 (440)
Q Consensus       288 ~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-~~~~~~  366 (440)
                      +..+-.+|...++.+|...=.|+|-++.++|..       ++++.|.++.+..+.++...|.++++-+.+|+. ..+..+
T Consensus       642 lR~f~h~l~yge~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNARla~m  714 (878)
T KOG2005|consen  642 LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNARLAQM  714 (878)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHHHHHH
Confidence            344445556667777777777777777777643       345667777777777777777777777777633 334444


Q ss_pred             hh
Q psy9169         367 IQ  368 (440)
Q Consensus       367 i~  368 (440)
                      +.
T Consensus       715 Lr  716 (878)
T KOG2005|consen  715 LR  716 (878)
T ss_pred             HH
Confidence            44

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	440
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		8e-91
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		5e-07
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-87
1ial_A	453	Importin Alpha, Mouse Length = 453		7e-79
1ial_A	453	Importin Alpha, Mouse Length = 453		9e-07
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		7e-79
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-06
4b8j_A	528	Rimp_alpha1a Length = 528		1e-78
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		2e-78
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		3e-06
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		4e-78
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		9e-07
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		5e-78
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-06
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		9e-78
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		9e-07
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-77
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-06
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-77
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		9e-07
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-77
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-06
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		2e-77
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-06
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		3e-77
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-06
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		3e-77
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-06
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		3e-77
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-06
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		3e-77
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-06
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		4e-77
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-06
2yns_A	490	Rimp_alpha_b54nls Length = 490		3e-76
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		3e-75
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		5e-75
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		5e-75
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		5e-75
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		5e-75
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		5e-75
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		3e-71
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		3e-71
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		6e-29
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-28
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		7e-28
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-27
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		8e-24
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-20
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-19
1qgk_B	44	Structure Of Importin Beta Bound To The Ibb Domain		2e-08
2gl7_A	550	Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX		7e-05
1i7x_A	538	Beta-CateninE-Cadherin Complex Length = 538		7e-05
1jpw_A	540	Crystal Structure Of A Human Tcf-4 BETA-Catenin Com		7e-05
3ouw_A	540	Structure Of Beta-Catenin With Lef-1 Length = 540		7e-05
2z6h_A	644	Crystal Structure Of Beta-Catenin Armadillo Repeat		7e-05
1t08_A	519	Crystal Structure Of Beta-CateninICAT HELICAL Domai		7e-05
1luj_A	514	Crystal Structure Of The Beta-CateninICAT COMPLEX L		7e-05
1g3j_A	532	Crystal Structure Of The Xtcf3-CbdBETA-Catenin Arma		8e-05
2bct_A	516	The Armadillo Repeat Region From Murine Beta-Cateni		8e-05
4djs_A	518	Structure Of Beta-Catenin In Complex With A Stapled		8e-05
1jdh_A	529	Crystal Structure Of Beta-Catenin And Htcf-4 Length		8e-05
3tx7_A	527	Crystal Structure Of Lrh-1BETA-Catenin Complex Leng		8e-05
1qz7_A	533	Beta-Catenin Binding Domain Of Axin In Complex With		8e-05
3sla_A	168	X-Ray Structure Of First Four Repeats Of Human Beta		1e-04
3sl9_A	167	X-Ray Structure Of Beta Catenin In Complex With Bcl		1e-04
2z6g_A	780	Crystal Structure Of A Full-Length Zebrafish Beta-C		2e-04
1qgr_B	27	Structure Of Importin Beta Bound To The Ibb Domain		3e-04

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  330 bits (847), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 174/372 (46%), Positives = 238/372 (63%), Gaps = 18/372 (4%)
Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI-----DQLDEIEEENVTVI 64
           R   FKN GK   EMRR+R E+NVELRKA KD+Q+ KRRN+     D    ++E      
Sbjct: 13  RLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENR---- 68
Query: 65  EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
                  +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V 
Sbjct: 69  --NNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 126
Query: 125 LLD--DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
            L   D +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WA
Sbjct: 127 FLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 185
Query: 183 LGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPD 238
           LGNI                +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP 
Sbjct: 186 LGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 245
Query: 239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298
            + ++  LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + 
Sbjct: 246 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305
Query: 299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358
           E  I+T ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG
Sbjct: 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365
Query: 359 NSRQIDHVIQEG 370
              QI  V+  G
Sbjct: 366 RQDQIQQVVNHG 377

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 112 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 171
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 172 ASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALL 213

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/420 (43%), Positives = 246/420 (58%), Gaps = 29/420 (6%)
Query: 10  RKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNI----DQLDEIEEENVTV- 63
           R+ +FKN G+ S DE+RR+R    VELRKA +D+ L KRRN     D  D  EE+  +V 
Sbjct: 17  RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 76
Query: 64  IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 123
            +    S ++  +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  V
Sbjct: 77  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 136
Query: 124 ELLDDENPNT-QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
           E + +  P   Q EA WALTNIASGTS QT  V++A+A+P F+QLL +  + + EQA WA
Sbjct: 137 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 196
Query: 183 LGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242
           LGN+                M  IL L   N P+  +R   W +SNLCR K P PD+  +
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVV 255
Query: 243 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
              LP L +LI++ D ETL D CWA+SY+SDG  + IQAV+D  +  RLVELL  E T +
Sbjct: 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 315
Query: 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
            T ALR VGNI TGND QT  VI AG L  ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 316 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ 375
Query: 363 IDHVIQEGELNQMALLVE-----------------ESGGLEKLEALQHHENETVYQKCYK 405
           I  VI    +  +  L+E                  SGGL++ + +++     V Q C K
Sbjct: 376 IQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY----LVSQGCIK 431

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 154/341 (45%), Positives = 216/341 (63%), Gaps = 18/341 (5%)
Query: 41  DDQLFKRRNI-----DQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIAT 95
           D+Q+ KRRN+     D    ++E             +  +V ++++G+ S+N + ++ AT
Sbjct: 1   DEQMLKRRNVSSFPDDATSPLQENR------NNQGTVNWSVEDIVKGINSNNLESQLQAT 54
Query: 96  RSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTM 153
           ++ARK+LS+E+ PPID +I AG++P  V  L   D +P  QFE+ WALTNIASGTSEQT 
Sbjct: 55  QAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQTK 113
Query: 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ-P 212
            V++  AIP F+ LL+SPH +++EQA WALGNI                +  +LAL+  P
Sbjct: 114 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 173
Query: 213 NTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 269
           +  T    +LRN+ W +SNLCRNKNPAP  + ++  LP L +L+H  D E L+D CWA+S
Sbjct: 174 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 233
Query: 270 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 329
           Y++DG N++I+ VV  GVVP+LV+LL + E  I+T ALR +GNI TG D QT  VI AG 
Sbjct: 234 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 293
Query: 330 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 370
           L     LL++ + NI KEA WT+SNITAG   QI  V+  G
Sbjct: 294 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 334

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 69  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 128
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 129 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 170

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  291 bits (744), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 150/332 (45%), Positives = 215/332 (64%), Gaps = 7/332 (2%)
Query: 45  FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 104
           F+R+++D  D   +++   +       +  +V ++++G+ S+N + ++ AT++ARK+LS+
Sbjct: 12  FERQHMDSPDLGTDDDDKAMADIGSGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSR 71
Query: 105 ERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTVINANAIP 162
           E+ PPID +I AG++P  V  L   D +P  QFE+ WALTNIASGTSEQT  V++  AIP
Sbjct: 72  EKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGGAIP 130
Query: 163 KFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT---TF 218
            F+ LL+SPH +++EQA WALGNI                +  +LAL+  P+  T    +
Sbjct: 131 AFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGY 190
Query: 219 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 278
           LRN+ W +SNLCRNKNPAP  + ++  LP L +L+H  D E L+D CWA+SY++DG N++
Sbjct: 191 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 250
Query: 279 IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 338
           I+ VV  GVVP+LV+LL + E  I+T ALR +GNI TG D QT  VI AG L     LL+
Sbjct: 251 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 310
Query: 339 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 370
           + + NI KEA WT+SNITAG   QI  V+  G
Sbjct: 311 NPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 342

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 77  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 136
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 137 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 178

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  290 bits (742), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/373 (44%), Positives = 229/373 (61%), Gaps = 7/373 (1%)
Query: 10  RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCM 69
           R+  +K A  + +E RR+R +  VE+RK+ +++ L K+R  + L    +  V     T +
Sbjct: 14  RRNRYKVAVDA-EEGRRRREDNMVEIRKSRREESLLKKRR-EGLQA--QAPVPASAATGV 69
Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE 129
                ++P MI G+ S +  +++ AT   RK+LS ER PPI+E+I++GVVP  V+ L  E
Sbjct: 70  DKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE 129
Query: 130 N-PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXX 188
           + P  QFEA WALTNIASGTSE T  VI+  A+P F++LL S   ++ EQA WALGN+  
Sbjct: 130 DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG 189
Query: 189 XXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
                         +  +LA +  +T  + LRN  W +SN CR K P P FE+ +  LP 
Sbjct: 190 DSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPA 248
Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           L +LIH+ D E L+D CWALSY+SDG NDKIQAV++ GV PRLVELL     ++L  ALR
Sbjct: 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308
Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVI 367
           TVGNI TG+D QT C+I    L  +  LL+ + + +I KEA WTISNITAGN  QI  VI
Sbjct: 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368
Query: 368 QEGELNQMALLVE 380
             G +  +  L++
Sbjct: 369 NAGIIGPLVNLLQ 381

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  289 bits (739), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 147/305 (48%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ SSN + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 6   VNWSVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDC 65
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 66  SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 124
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  +    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 125 GSVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQI 184
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I  VV TGVVP+LV+LL + E  I+T 
Sbjct: 185 LPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTP 244
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 245 ALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 304
Query: 366 VIQEG 370
           V+  G
Sbjct: 305 VVNHG 309

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 44  IDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 103
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 104 ASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLALL 145

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  288 bits (737), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 151/335 (45%), Positives = 219/335 (65%), Gaps = 9/335 (2%)
Query: 44  LFKRRNIDQLD-EIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 101
           LF+R ++D  D   +++++ + +  +    +  +V ++++G+ S+N + ++ AT++ARK+
Sbjct: 25  LFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84
Query: 102 LSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTVINAN 159
           LS+E+ PPID +I AG++P  V  L   D +P  QFE+ WALTNIASGTSEQT  V++  
Sbjct: 85  LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGG 143
Query: 160 AIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT-- 216
           AIP F+ LL+SPH +++EQA WALGNI                +  +LAL+  P+  T  
Sbjct: 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203
Query: 217 -TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275
             +LRN+ W +SNLCRNKNPAP  + ++  LP L +L+H  D E L+D CWA+SY++DG 
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263
Query: 276 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 335
           N++I+ VV  GVVP+LV+LL + E  I+T ALR +GNI TG D QT  VI AG L     
Sbjct: 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 323
Query: 336 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 370
           LL++ + NI KEA WT+SNITAG   QI  V+  G
Sbjct: 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  288 bits (736), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 151/335 (45%), Positives = 219/335 (65%), Gaps = 9/335 (2%)
Query: 44  LFKRRNIDQLD-EIEEENVTVIE-PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKM 101
           LF+R ++D  D   +++++ + +  +    +  +V ++++G+ S+N + ++ AT++ARK+
Sbjct: 25  LFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 84
Query: 102 LSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQTMTVINAN 159
           LS+E+ PPID +I AG++P  V  L   D +P  QFE+ WALTNIASGTSEQT  V++  
Sbjct: 85  LSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQTKAVVDGG 143
Query: 160 AIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT-- 216
           AIP F+ LL+SPH +++EQA WALGNI                +  +LAL+  P+  T  
Sbjct: 144 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLA 203
Query: 217 -TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275
             +LRN+ W +SNLCRNKNPAP  + ++  LP L +L+H  D E L+D CWA+SY++DG 
Sbjct: 204 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263
Query: 276 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 335
           N++I+ VV  GVVP+LV+LL + E  I+T ALR +GNI TG D QT  VI AG L     
Sbjct: 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS 323
Query: 336 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 370
           LL++ + NI KEA WT+SNITAG   QI  V+  G
Sbjct: 324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG 358

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  287 bits (734), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 55  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 114
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 115 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 233
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T 
Sbjct: 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 366 VIQEG 370
           V+  G
Sbjct: 354 VVNHG 358

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 93  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 194

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  286 bits (733), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 41  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 100
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 101 SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 159
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 160 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 219
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T 
Sbjct: 220 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 279
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 280 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 339
Query: 366 VIQEG 370
           V+  G
Sbjct: 340 VVNHG 344

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 79  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 138
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 139 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 180

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 5   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 64
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 65  SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 123
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 124 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 183
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T 
Sbjct: 184 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 243
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 244 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 366 VIQEG 370
           V+  G
Sbjct: 304 VVNHG 308

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 43  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 102
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 103 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 71  SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 129
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 130 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 189
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T 
Sbjct: 190 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 249
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 250 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309
Query: 366 VIQEG 370
           V+  G
Sbjct: 310 VVNHG 314

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 49  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 108
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 109 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 150

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  286 bits (731), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 4   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 63
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 64  SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 122
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 123 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 182
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T 
Sbjct: 183 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 242
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 243 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 366 VIQEG 370
           V+  G
Sbjct: 303 VVNHG 307

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 42  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 101
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 102 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 4   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 63
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 64  SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 122
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 123 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 182
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T 
Sbjct: 183 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 242
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 243 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 366 VIQEG 370
           V+  G
Sbjct: 303 VVNHG 307

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 42  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 101
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 102 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 143

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 5   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 64
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 65  SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 123
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 124 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 183
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T 
Sbjct: 184 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 243
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 244 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 366 VIQEG 370
           V+  G
Sbjct: 304 VVNHG 308

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 43  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 102
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 103 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  285 bits (730), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/305 (47%), Positives = 203/305 (66%), Gaps = 7/305 (2%)
Query: 72  IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DE 129
           +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D 
Sbjct: 5   VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 64
Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXX 189
           +P  QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI   
Sbjct: 65  SP-IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 123
Query: 190 XXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                        +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  
Sbjct: 124 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 183
Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T 
Sbjct: 184 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 243
Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  
Sbjct: 244 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 366 VIQEG 370
           V+  G
Sbjct: 304 VVNHG 308

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 43  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 102
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 103 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 144

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  285 bits (729), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/302 (48%), Positives = 202/302 (66%), Gaps = 7/302 (2%)
Query: 75  TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPN 132
           +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D +P 
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP- 61
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
            QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI      
Sbjct: 62  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 193 XXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
                     +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  LP 
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T ALR
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
            +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  V+ 
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 369 EG 370
            G
Sbjct: 302 HG 303

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 38  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 97
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 98  ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  285 bits (729), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/302 (48%), Positives = 202/302 (66%), Gaps = 7/302 (2%)
Query: 75  TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPN 132
           +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   D +P 
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP- 61
Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXX 192
            QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNI      
Sbjct: 62  IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 121
Query: 193 XXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 248
                     +  +LAL+  P+  T    +LRN+ W +SNLCRNKNPAP  + ++  LP 
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 249 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 308
           L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T ALR
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 241
Query: 309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
            +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  V+ 
Sbjct: 242 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 369 EG 370
            G
Sbjct: 302 HG 303

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 279 IQAVVDTGVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           I  ++  G++P+ V  L   + + I   +   + NIA+G   QT  V+  G +     LL
Sbjct: 38  IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 97
Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
           +S   +I ++A W + NI    S   D VI+ G ++ +  L+
Sbjct: 98  ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL 139

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  282 bits (721), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 155/338 (45%), Positives = 211/338 (62%), Gaps = 8/338 (2%)
Query: 45  FKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSK 104
           F+R+++D  D   ++     +   M+ I  ++P MI G+ S +  +++ AT   RK+LS 
Sbjct: 12  FERQHMDSPDLGTDD-----DDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSI 66
Query: 105 ERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANAIPK 163
           ER PPI+E+I++GVVP  V+ L  E+ P  QFEA WALTNIASGTSE T  VI+  A+P 
Sbjct: 67  ERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPI 126
Query: 164 FLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIV 223
           F++LL S   ++ EQA WALGN+                +  +LA +  +T  + LRN  
Sbjct: 127 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 186
Query: 224 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV 283
           W +SN CR K P P FE+ +  LP L +LIH+ D E L+D CWALSY+SDG NDKIQAV+
Sbjct: 187 WTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVI 245
Query: 284 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RV 342
           + GV PRLVELL     ++L  ALRTVGNI TG+D QT C+I    L  +  LL+ + + 
Sbjct: 246 EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKK 305
Query: 343 NIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVE 380
           +I KEA WTISNITAGN  QI  VI  G +  +  L++
Sbjct: 306 SIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 343

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  279 bits (713), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/373 (42%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  VE + +  P   Q
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
            EA WALTNIASGTS QT  V++A+A+P F+QLL +  + + EQA WALGN+        
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
                   M  IL L   N P+  +R   W +SNLCR K P PD+  +   LP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           + D ETL D CWA+SY+SDG  + IQAV+D  +  RLVELL  E T + T ALR VGNI 
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
           TGND QT  VI AG L  ++ LLSS + NI KEA WTISNITAGN+ QI  VI    +  
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 299
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYKIISMAFN----- 412
           +  L+E                  SGGL++ + +++  ++   +    ++ +A N     
Sbjct: 300 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 359
Query: 413 --DSAENSIENGD 423
             D+ EN I+ G+
Sbjct: 360 TLDALENIIKMGE 372

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  278 bits (711), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 154/348 (44%), Positives = 205/348 (58%), Gaps = 23/348 (6%)
Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  VE + +  P   Q
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
            EA WALTNIASGTS QT  V++A+A+P F+QLL +  + + EQA WALGN+        
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
                   M  IL L   N P+  +R   W +SNLCR K P PD+  +   LP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           + D ETL D CWA+SY+SDG  + IQAV+D  +  RLVELL  E T + T ALR VGNI 
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
           TGND QT  VI AG L  ++ LLSS + NI KEA WTISNITAGN+ QI  VI    +  
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 300
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYK 405
           +  L+E                  SGGL++ + +++     V Q C K
Sbjct: 301 LVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY----LVSQGCIK 344

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  278 bits (710), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 156/373 (41%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  VE + +  P   Q
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
            EA WALTNIASGTS QT  V++A+A+P F+QLL +  + + EQA WALGN+        
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
                   M  IL L   N P+  +R   W +SNLCR K P PD+  +   LP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           + D ETL D CWA+SY+SDG  + IQAV+D  +  RLVELL  E T + T ALR VGNI 
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
           TGND QT  VI AG L  ++ LLSS + NI KEA WTISNITAGN+ QI  VI    +  
Sbjct: 240 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 299
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYKIISMAFN----- 412
           +  L+E                  SGGL++ + +++  ++   +    ++ +A N     
Sbjct: 300 LVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 359
Query: 413 --DSAENSIENGD 423
             D+ EN ++ G+
Sbjct: 360 TLDALENILKMGE 372

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  278 bits (710), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 156/373 (41%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  VE + +  P   Q
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
            EA WALTNIASGTS QT  V++A+A+P F+QLL +  + + EQA WALGN+        
Sbjct: 63  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 122
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
                   M  IL L   N P+  +R   W +SNLCR K P PD+  +   LP L +LI+
Sbjct: 123 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 181
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           + D ETL D CWA+SY+SDG  + IQAV+D  +  RLVELL  E T + T ALR VGNI 
Sbjct: 182 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
           TGND QT  VI AG L  ++ LLSS + NI KEA WTISNITAGN+ QI  VI    +  
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 301
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYKIISMAFN----- 412
           +  L+E                  SGGL++ + +++  ++   +    ++ +A N     
Sbjct: 302 LVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 361
Query: 413 --DSAENSIENGD 423
             D+ EN ++ G+
Sbjct: 362 TLDALENILKMGE 374

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  278 bits (710), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 156/373 (41%), Positives = 217/373 (58%), Gaps = 26/373 (6%)
Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  VE + +  P   Q
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 62
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
            EA WALTNIASGTS QT  V++A+A+P F+QLL +  + + EQA WALGN+        
Sbjct: 63  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 122
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
                   M  IL L   N P+  +R   W +SNLCR K P PD+  +   LP L +LI+
Sbjct: 123 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 181
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           + D ETL D CWA+SY+SDG  + IQAV+D  +  RLVELL  E T + T ALR VGNI 
Sbjct: 182 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
           TGND QT  VI AG L  ++ LLSS + NI KEA WTISNITAGN+ QI  VI    +  
Sbjct: 242 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 301
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYKIISMAFN----- 412
           +  L+E                  SGGL++ + +++  ++   +    ++ +A N     
Sbjct: 302 LVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 361
Query: 413 --DSAENSIENGD 423
             D+ EN ++ G+
Sbjct: 362 TLDALENILKMGE 374

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  278 bits (710), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 154/348 (44%), Positives = 205/348 (58%), Gaps = 23/348 (6%)
Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-Q 134
           +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  VE + +  P   Q
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXX 194
            EA WALTNIASGTS QT  V++A+A+P F+QLL +  + + EQA WALGN+        
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 195 XXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
                   M  IL L   N P+  +R   W +SNLCR K P PD+  +   LP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           + D ETL D CWA+SY+SDG  + IQAV+D  +  RLVELL  E T + T ALR VGNI 
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
           TGND QT  VI AG L  ++ LLSS + NI KEA WTISNITAGN+ QI  VI    +  
Sbjct: 241 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPP 300
Query: 375 MALLVE-----------------ESGGLEKLEALQHHENETVYQKCYK 405
           +  L+E                  SGGL++ + +++     V Q C K
Sbjct: 301 LVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRY----LVSQGCIK 344

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  265 bits (678), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 165/435 (37%), Positives = 225/435 (51%), Gaps = 85/435 (19%)
Query: 69  MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD 127
           M+P  +   +MIE + S +P+ ++ AT+  RK+LSKE +PPIDE+I   GVV   VE L 
Sbjct: 15  MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 74
Query: 128 -DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
             EN   QFE+ W LTNIASG S QT  VI A A+P F++LLSS   ++ EQA WALGNI
Sbjct: 75  RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 134
Query: 187 XXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
                           +P +L L       T  RN VWA+SNLCR K+P P+F K+  CL
Sbjct: 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 194
Query: 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306
            +L+ L+  +D + L+D CWALSY+SDG NDKIQAV+D GV  RLVELL   +  +++ A
Sbjct: 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA 254
Query: 307 LRTVGNIATGNDHQT----DC--------------------------------------V 324
           LR VGNI TG+D QT    +C                                      V
Sbjct: 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 314
Query: 325 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEG------------- 370
           I A     +  +L ++     KEAAW I+N T+G S  QI ++++ G             
Sbjct: 315 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374
Query: 371 -ELNQMAL--------------------------LVEESGGLEKLEALQHHENETVYQKC 403
            ++ Q+AL                          L+EE+ GL+K+E LQ HEN+ +YQK 
Sbjct: 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKA 434
Query: 404 YKIISMAFNDSAENS 418
           + +I   F    E+S
Sbjct: 435 FDLIEHYFGTEDEDS 449

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  265 bits (678), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 165/435 (37%), Positives = 225/435 (51%), Gaps = 85/435 (19%)
Query: 69  MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD 127
           M+P  +   +MIE + S +P+ ++ AT+  RK+LSKE +PPIDE+I   GVV   VE L 
Sbjct: 12  MAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK 71
Query: 128 -DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 186
             EN   QFE+ W LTNIASG S QT  VI A A+P F++LLSS   ++ EQA WALGNI
Sbjct: 72  RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNI 131
Query: 187 XXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL 246
                           +P +L L       T  RN VWA+SNLCR K+P P+F K+  CL
Sbjct: 132 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCL 191
Query: 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306
            +L+ L+  +D + L+D CWALSY+SDG NDKIQAV+D GV  RLVELL   +  +++ A
Sbjct: 192 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPA 251
Query: 307 LRTVGNIATGNDHQT----DC--------------------------------------V 324
           LR VGNI TG+D QT    +C                                      V
Sbjct: 252 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTV 311
Query: 325 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEG------------- 370
           I A     +  +L ++     KEAAW I+N T+G S  QI ++++ G             
Sbjct: 312 IDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 371
Query: 371 -ELNQMAL--------------------------LVEESGGLEKLEALQHHENETVYQKC 403
            ++ Q+AL                          L+EE+ GL+K+E LQ HEN+ +YQK 
Sbjct: 372 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKA 431
Query: 404 YKIISMAFNDSAENS 418
           + +I   F    E+S
Sbjct: 432 FDLIEHYFGTEDEDS 446

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  125 bits (313), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 14/233 (6%)
Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +P+M + + S + + ++ ATR   ++LS + +  I  +I+AG +P  V+LL   N     
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXX 195
           EA WAL+NIASG +EQ   VI+A A+P  +QLLSSP+  + ++A WAL NI         
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 196 XXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLL 249
                  +P ++ L+  PN     L+  +WA+SN+    N     E+I+       LP L
Sbjct: 133 AVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGN-----EQIQAVIDAGALPAL 185
Query: 250 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
            QL+ + + + L +  WALS I+ G N++ QAV + G + +L +L   E   I
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/192 (37%), Positives = 101/192 (52%), Gaps = 29/192 (15%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
            LP L QL+ + + + L +  WALS I+ G N++IQAV+D G +P LV+LL S    IL 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
            AL  + NIA+G + Q   VI AG L  + +LLSS    I++EA W +SNI +G + QI 
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174
Query: 365 HVIQEGEL-----------------------------NQMALLVEESGGLEKLEALQHHE 395
            VI  G L                             N+    V+E+G LEKLE LQ HE
Sbjct: 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 234
Query: 396 NETVYQKCYKII 407
           NE + ++  + +
Sbjct: 235 NEKIQKEAQEAL 246

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  121 bits (304), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 94/163 (57%), Gaps = 13/163 (7%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
            LP L QL+ + + + L +  WALS I+ G N++IQAV+D G +P LV+LL S    IL 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
            AL  + NIA+G + Q   VI AG L  + +LLSS    I++EA W +SNI +G + Q  
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 365 HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
                         V+E+G LEKLE LQ HENE + ++  + +
Sbjct: 175 A-------------VKEAGALEKLEQLQSHENEKIQKEAQEAL 204

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/163 (40%), Positives = 94/163 (57%), Gaps = 13/163 (7%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
            LP L QL+ + + + L +  WALS I+ G N++IQAV+D G +P LV+LL S    IL 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
            AL  + NIA+G + Q   VI AG L  + +LLSS    I++EA W +SNI +G + Q  
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 365 HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
                         V+E+G LEKLE LQ HENE + ++  + +
Sbjct: 175 A-------------VKEAGALEKLEQLQSHENEKIQKEAQEAL 204

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  108 bits (269), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 13/163 (7%)
Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
            LP L QL+ + + + L +  WALS I+ G N++IQAV+D G +P LV+LL S    IL 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
            AL  + NIA+G + Q   VI AG L  + +LLSS    I++EA W +SNI +G + Q  
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 365 HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
                         V+E+G    LE LQ   NE + ++  + +
Sbjct: 175 A-------------VKEAGAEPALEQLQSSPNEKIQKEAQEAL 204

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 45/265 (16%)
Query: 97  SARKMLSKERHPP--IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT 154
           +AR +      P   I  +++AG V + V+LL   +   Q EA  AL NIASG  E    
Sbjct: 22  AARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81
Query: 155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNT 214
           +++A  +   ++LL+S    + ++A  AL NI                          + 
Sbjct: 82  IVDAGGVEVLVKLLTSTDSEVQKEAARALANI-------------------------ASG 116
Query: 215 PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 274
           P   ++ IV              D   +++ + LL     +TD E   +   AL+ I+ G
Sbjct: 117 PDEAIKAIV--------------DAGGVEVLVKLLT----STDSEVQKEAARALANIASG 158
Query: 275 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMK 334
            ++ I+A+VD G V  LV+LL S ++ +   A R + NIA+G       ++ AGG++ ++
Sbjct: 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQ 218
Query: 335 KLLSSSRVNIVKEAAWTISNITAGN 359
           KLL+S+   + KEA   + NI +G 
Sbjct: 219 KLLTSTDSEVQKEAQRALENIKSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 130/285 (45%), Gaps = 56/285 (19%)
Query: 123 VELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
           V+LL   +  TQ EA   L  IASG +     +++A  +   ++LL+S    + ++A  A
Sbjct: 8   VKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 67
Query: 183 LGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242
           L NI                          + P   ++ IV              D   +
Sbjct: 68  LANI-------------------------ASGPDEAIKAIV--------------DAGGV 88
Query: 243 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
           ++ + LL     +TD E   +   AL+ I+ G ++ I+A+VD G V  LV+LL S ++ +
Sbjct: 89  EVLVKLLT----STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 144
Query: 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
              A R + NIA+G D     ++ AGG++ + KLL+S+   + KEAA  ++NI +G +  
Sbjct: 145 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204
Query: 363 IDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
           I  ++             ++GG+E L+ L    +  V ++  + +
Sbjct: 205 IKAIV-------------DAGGVEVLQKLLTSTDSEVQKEAQRAL 236

>pdb|1QGK|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 44

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/41 (65%), Positives = 31/41 (75%)
Query: 10 RKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 50
          R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 3  RLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNV 43

>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX Length = 550

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 69  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 127
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 128 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 172

>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex Length = 538

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 72  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 130
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 131 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 175

>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex Length = 540

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 75  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 133
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 134 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 178

>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1 Length = 540

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 74  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 132
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 133 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 177

>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region And Its C-Terminal Domain Length = 644

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 68  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 126
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171

>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL DomainUNPHOSPHORYLATED APC R3 Length = 519

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 60  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 118
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 119 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 163

>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX Length = 514

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 56  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 114
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 115 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 159

>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo Repeat Complex Length = 532

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 73  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 131
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 132 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 176

>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin Length = 516

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 56  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 114
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 115 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 159

>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled Peptide Inhibitor Length = 518

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 58  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 116
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 117 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 161

>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4 Length = 529

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 71  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174

>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex Length = 527

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 69  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 127
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 128 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 172

>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta- Catenin Length = 533

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 73  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 131
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 132 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 176

>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human Beta-Catenin Length = 168

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 67  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 125
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
              +     V  AGGLQKM  LL+ + V  +
Sbjct: 126 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 156

>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9 Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV++L S   ++L  A+ T+ N+ 
Sbjct: 67  TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 125
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
              +     V  AGGLQKM  LL+ + V  +
Sbjct: 126 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 156

>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin Length = 780

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T DVET       L  +S  H + + A+  +G +P LV +L S   ++L  A+ T+ N+ 
Sbjct: 204 TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 359
              +     V  AGGLQKM  LL+ + V  +      +  +  GN
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307

>pdb|1QGR|B Chain B, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha (Ii Crystal Form, Grown At Low Ph) Length = 27

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 25 RRKRCEMNVELRKAHKDDQLFKRRNI 50
          RR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 1  RRRRIEVNVELRKAKKDDQMLKRRNV 26

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	440
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-128
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-59
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-120
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-116
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-57
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-75
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-43
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-40
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-70
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-54
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-44
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-44
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-40
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-35
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-68
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-49
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-49
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-43
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-24
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-57
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-41
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-36
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-22
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-55
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-49
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-44
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-24
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-54
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-48
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-11
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-51
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-25
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-36
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-09
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-35
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-14
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-08
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-35
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-13
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-33
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	8e-23
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-15
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-27
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-12
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	6e-09
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	4e-16
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-14
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	6e-13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-11
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	6e-09
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	3e-07
1qgr_B	27	Protein (importin alpha-2 subunit); transport rece	9e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-06
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	1e-05
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	6e-05
1qgr_A	876	Protein (importin beta subunit); transport recepto	6e-05
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	1e-04
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	4e-04

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  381 bits (980), Expect = e-128
 Identities = 181/398 (45%), Positives = 244/398 (61%), Gaps = 8/398 (2%)

Query: 1   MSQKVAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLD----- 54
            + K     R+ +FKN G+ S DE+RR+R    VELRKA +D+ L KRRN          
Sbjct: 8   STSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADS 67

Query: 55  EIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI 114
           + E+E+    +    S ++  +P+M + + S + + ++ AT   R++LS+E  PPID +I
Sbjct: 68  DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127

Query: 115 EAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL 173
           +AGVVP  VE + +++    Q EA WALTNIASGTS QT  V++A+A+P F+QLL +  +
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187

Query: 174 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 233
            + EQA WALGN+AGD    RD +L    M  IL L   N P+  +R   W +SNLCR K
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGK 246

Query: 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293
            P PD+  +   LP L +LI++ D ETL D CWA+SY+SDG  + IQAV+D  +  RLVE
Sbjct: 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306

Query: 294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 353
           LL  E T + T ALR VGNI TGND QT  VI AG L  ++ LLSS + NI KEA WTIS
Sbjct: 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366

Query: 354 NITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEAL 391
           NITAGN+ QI  VI    +  +  L+E +    K EA 
Sbjct: 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  202 bits (515), Expect = 1e-59
 Identities = 78/366 (21%), Positives = 159/366 (43%), Gaps = 14/366 (3%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           VP  I+ + + + +++  A  +    ++ +     D +++   +   + L +   P+   
Sbjct: 175 VPLFIQLLYTGSVEVKEQAIWALGN-VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIR 233

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
            ATW L+N+  G   Q    + + A+P   +L+ S        A WA+  ++     A  
Sbjct: 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ 293

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
            ++ +    +++ L+   +        + A+ N+    +           LP L  L+ +
Sbjct: 294 AVIDVRIPKRLVELLSHESTLV-QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352

Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
                  + CW +S I+ G+ ++IQAV+D  ++P LV+LL+  E      A   + N ++
Sbjct: 353 PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412

Query: 316 GNDHQTDCV---IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL 372
           G   + D +   +  G ++ +  LL  +   I++     + NI      + D   +   +
Sbjct: 413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI--LKMGEADKEARGLNI 470

Query: 373 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPV 432
           N+ A  +E++GG+EK+   Q +EN+ +Y+K YKII   F +  +   E          P 
Sbjct: 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMA-------PQ 523

Query: 433 NTVNGF 438
           N  N F
Sbjct: 524 NAGNTF 529

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  360 bits (924), Expect = e-120
 Identities = 158/403 (39%), Positives = 230/403 (57%), Gaps = 21/403 (5%)

Query: 22  DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 81
                 R     E   A  + Q     ++   D+ +         +    +  +V ++++
Sbjct: 8   SSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMA---DIGSNQGTVNWSVEDIVK 64

Query: 82  GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWA 140
           G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L   +    QFE+ WA
Sbjct: 65  GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWA 124

Query: 141 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 200
           LTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNIAGDG+  RDL++  
Sbjct: 125 LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH 184

Query: 201 GTMPQILALVQ----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT 256
           G +  +LAL+           +LRN+ W +SNLCRNKNPAP  + ++  LP L +L+H  
Sbjct: 185 GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244

Query: 257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 316
           D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+T ALR +GNI TG
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304

Query: 317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMA 376
            D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI  V+         
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV--------- 355

Query: 377 LLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSI 419
                 G +  L  +    +    ++    I+   +      I
Sbjct: 356 ----NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  346 bits (888), Expect = e-116
 Identities = 164/368 (44%), Positives = 214/368 (58%), Gaps = 20/368 (5%)

Query: 52  QLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPID 111
              E +  N+ +       P  +   +MIE + S +P+ ++ AT+  RK+LSKE +PPID
Sbjct: 4   GFHEAQINNMEMA------PGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID 57

Query: 112 ELI-EAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 169
           E+I   GVV   VE L   EN   QFE+ W LTNIASG S QT  VI A A+P F++LLS
Sbjct: 58  EVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLS 117

Query: 170 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 229
           S   ++ EQA WALGNIAGD    RD +L    +P +L L       T  RN VWA+SNL
Sbjct: 118 SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177

Query: 230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 289
           CR K+P P+F K+  CL +L+ L+  +D + L+D CWALSY+SDG NDKIQAV+D GV  
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237

Query: 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
           RLVELL   +  +++ ALR VGNI TG+D QT  ++    LQ +  LLSS + +I KEA 
Sbjct: 238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEAC 297

Query: 350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM 409
           WTISNITAGN  QI  VI       +            +  LQ  E  T  +  + I + 
Sbjct: 298 WTISNITAGNRAQIQTVIDANIFPAL------------ISILQTAEFRTRKEAAWAITNA 345

Query: 410 AFNDSAEN 417
               SAE 
Sbjct: 346 TSGGSAEQ 353

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  195 bits (496), Expect = 1e-57
 Identities = 78/345 (22%), Positives = 146/345 (42%), Gaps = 6/345 (1%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           VP  IE + S    ++  A   A   ++ +     D +++  ++P  ++L   +N  T  
Sbjct: 109 VPIFIELLSSEFEDVQEQAVW-ALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167

Query: 136 E-ATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
             A WAL+N+  G S        +  +     LL     ++   A WAL  ++       
Sbjct: 168 RNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKI 227

Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
             ++  G   +++ L+  N     +   + A+ N+    +           L  L  L+ 
Sbjct: 228 QAVIDAGVCRRLVELLMHNDYKV-VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLS 286

Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           +       + CW +S I+ G+  +IQ V+D  + P L+ +L + E      A   + N  
Sbjct: 287 SPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346

Query: 315 TGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373
           +G    Q   +++ G ++ +  LL+     IV+ A   + NI      + +       +N
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG--EQEAKRNGTGIN 404

Query: 374 QMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 418
               L+EE+ GL+K+E LQ HEN+ +YQK + +I   F    E+S
Sbjct: 405 PYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  235 bits (602), Expect = 1e-75
 Identities = 77/240 (32%), Positives = 127/240 (52%), Gaps = 2/240 (0%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +P+M + + S + + ++ ATR   + +  + +  I  +I+AG +P  V+LL   N     
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQ-ILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
           EA WAL+NIASG +EQ   VI+A A+P  +QLLSSP+  + ++A WAL NIA  G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
            ++  G +P ++ L+        L+  +WA+SN+    N           LP L QL+ +
Sbjct: 133 AVIDAGALPALVQLLSSPNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191

Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
            + + L +  WALS I+ G N++ QAV + G + +L +L   E   I   A   +  + +
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  152 bits (385), Expect = 2e-43
 Identities = 50/125 (40%), Positives = 71/125 (56%)

Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           LP + Q +++ D++         S I    N++IQAV+D G +P LV+LL S    IL  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 365
           AL  + NIA+G + Q   VI AG L  + +LLSS    I++EA W +SNI +G + QI  
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 366 VIQEG 370
           VI  G
Sbjct: 134 VIDAG 138

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  142 bits (361), Expect = 5e-40
 Identities = 83/284 (29%), Positives = 121/284 (42%), Gaps = 72/284 (25%)

Query: 154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 213
              + + +P+  Q L+S  +     AT     I  DG      ++  G +P   ALVQ  
Sbjct: 7   HHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALP---ALVQ-- 61

Query: 214 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273
                                                 L+ + + + L +  WALS I+ 
Sbjct: 62  --------------------------------------LLSSPNEQILQEALWALSNIAS 83

Query: 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 333
           G N++IQAV+D G +P LV+LL S    IL  AL  + NIA+G + Q   VI AG L  +
Sbjct: 84  GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 143

Query: 334 KKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL--------------------- 372
            +LLSS    I++EA W +SNI +G + QI  VI  G L                     
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 203

Query: 373 --------NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408
                   N+    V+E+G LEKLE LQ HENE + ++  + + 
Sbjct: 204 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  229 bits (586), Expect = 5e-70
 Identities = 64/343 (18%), Positives = 131/343 (38%), Gaps = 18/343 (5%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           V  ++  M+++N       T      LS  R   +  + ++G +P  V++L     +  F
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 119

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
            A   L N+        M V  A  + K + LL+  ++      T  L  +A     ++ 
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
           ++L  G    ++ +++  T    L      +  L    +  P   +    +  L   +  
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTD 238

Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
                + +  W L  +SD    +       G++  LV+LL S++  ++T A   + N+  
Sbjct: 239 PSQRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295

Query: 316 GNDHQTDCVIQAGGLQKMKKLL--SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373
            N      V Q GG++ + + +  +  R +I + A   + ++T+ +        QE E+ 
Sbjct: 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH--------QEAEMA 347

Query: 374 QMALLVEESGGLEKL-EALQHHENETVYQKCYKIISMAFNDSA 415
           Q A  V    GL  + + L    +  + +    +I       A
Sbjct: 348 QNA--VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  188 bits (479), Expect = 2e-54
 Identities = 62/314 (19%), Positives = 117/314 (37%), Gaps = 7/314 (2%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQ 134
           +PE+ + +   +  +   A     + LSK+       +    +V   V  + + N   T 
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
                 L N+ S   E  + +  +  IP  +++L SP  ++   A   L N+      A+
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
             +   G + +++AL+       FL      +  L      +            L  ++ 
Sbjct: 137 MAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
           T   E L      +  +    +    A+V+ G +  L   L      ++   L T+ N++
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255

Query: 315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
              D  T      G L  + +LL S  +N+V  AA  +SN+T  N +    V Q G +  
Sbjct: 256 ---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312

Query: 375 MALLVEESGGLEKL 388
           +   V  +G  E +
Sbjct: 313 LVRTVLRAGDREDI 326

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  161 bits (409), Expect = 2e-44
 Identities = 57/358 (15%), Positives = 110/358 (30%), Gaps = 43/358 (12%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
              ++  M++   +  +  T    K+LS         ++EAG +      L D +     
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
              W L N++   ++Q         +   +QLL S  +N+   A   L N+  +  + + 
Sbjct: 246 NCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 302

Query: 196 LLLGLGTMPQILALVQPNTPTTFLR-NIVWAISNLCRNKNPAPDFEKIKI---CLPLLNQ 251
           ++  +G +  ++  V        +    + A+ +L      A   +        LP++ +
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 362

Query: 252 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311
           L+H      L      L             + + G +PRLV+LL                
Sbjct: 363 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422

Query: 312 NIATG---------------------NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 350
                                     + H    +     +    +LL S   NI + AA 
Sbjct: 423 QQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482

Query: 351 TISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408
            +  +                  + A  +E  G    L  L H  NE V      ++ 
Sbjct: 483 VLCELAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  161 bits (409), Expect = 2e-44
 Identities = 45/300 (15%), Positives = 114/300 (38%), Gaps = 19/300 (6%)

Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL- 168
            D  +    +P   +LL+DE+     +A   +  ++   + +   + +   +   ++ + 
Sbjct: 10  DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69

Query: 169 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228
           ++  +  A      L N++         +   G +P ++ ++     +  L   +  + N
Sbjct: 70  NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITTLHN 127

Query: 229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 288
           L  ++  A    ++   L  +  L++ T+V+ L+     L  ++ G+ +    ++ +G  
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 289 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 348
             LV ++ +     L      V  + +        +++AGG+Q +   L+     +V+  
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 349 AWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 408
            WT+ N++   ++Q                    G L  L  L   ++  V      I+S
Sbjct: 248 LWTLRNLSDAATKQE----------------GMEGLLGTLVQLLGSDDINVVTCAAGILS 291

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  151 bits (382), Expect = 1e-40
 Identities = 37/256 (14%), Positives = 88/256 (34%), Gaps = 12/256 (4%)

Query: 140 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 199
           A+ N+ +    Q    +   AIP+  +LL+     +  +A   +  ++   A    ++  
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 200 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI----CLPLLNQLIHT 255
              +  I+  +Q        R     + NL  ++        + I     +P L +++ +
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG-----LLAIFKSGGIPALVKMLGS 112

Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
                L      L  +         AV   G + ++V LL+      L      +  +A 
Sbjct: 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172

Query: 316 GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQM 375
           GN      ++ +GG Q +  ++ +     +      +  + +  S     +++ G +  +
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 232

Query: 376 ALLVEESGGLEKLEAL 391
            L + +         L
Sbjct: 233 GLHLTDPSQRLVQNCL 248

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  146 bits (369), Expect = 7e-39
 Identities = 53/365 (14%), Positives = 129/365 (35%), Gaps = 19/365 (5%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           + +M+  +  +N K   I T   +  L+         ++ +G     V ++         
Sbjct: 145 LQKMVALLNKTNVKFLAITTDCLQI-LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 203

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
             T  +  + S  S     ++ A  +      L+ P   L +   W L N++ D A  ++
Sbjct: 204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQE 262

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP-APDFEKIKICLPLLNQLIH 254
            + GL  +  ++ L+  +     +      +SNL  N         ++     L+  ++ 
Sbjct: 263 GMEGL--LGTLVQLLGSDDINV-VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319

Query: 255 TTDVETL-SDICWALSYISDGHNDK---IQAVVDTGVVPRLVELLDSEETTILTAALRTV 310
             D E +      AL +++  H +      AV     +P +V+LL       L  A   +
Sbjct: 320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379

Query: 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE- 369
                        + + G + ++ +LL  +  +  +  +   +        +++ +++  
Sbjct: 380 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439

Query: 370 -GELNQMA------LLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAENSIEN 421
            G L+ +A      +++     +     L +   E + +    ++  +A +  A  +IE 
Sbjct: 440 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 499

Query: 422 GDTIE 426
                
Sbjct: 500 EGATA 504

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  135 bits (341), Expect = 5e-35
 Identities = 45/307 (14%), Positives = 98/307 (31%), Gaps = 32/307 (10%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +  +   +   + ++      + R  LS        +    G++   V+LL  ++ N   
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRN-LSDA---ATKQEGMEGLLGTLVQLLGSDDINVVT 284

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGDGA-- 191
            A   L+N+     +  M V     I   ++ +  +    ++ E A  AL ++       
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344

Query: 192 -RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 250
             A++ +     +P ++ L+ P +    ++  V  I NL           +    +P L 
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLV 403

Query: 251 QLIHTTDVETLSDICWALSYISDG---------------------HNDKIQAVVDTGVVP 289
           QL+     +T        +                                 +     +P
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463

Query: 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
             V+LL S    I   A   +  +A   +   + +   G    + +LL S    +   AA
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEGVATYAA 522

Query: 350 WTISNIT 356
             +  ++
Sbjct: 523 AVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  226 bits (578), Expect = 9e-68
 Identities = 65/355 (18%), Positives = 135/355 (38%), Gaps = 19/355 (5%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           V  ++  M+++N       T      LS  R   +  + ++G +P  V++L     +  F
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLF 116

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
            A   L N+        M V  A  + K + LL+  ++      T  L  +A     ++ 
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
           ++L  G    ++ +++  T    L      +  L    +  P   +    +  L   +  
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTD 235

Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
                + +  W L  +SD    +       G++  LV+LL S++  ++T A   + N+  
Sbjct: 236 PSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292

Query: 316 GNDHQTDCVIQAGGLQKMKKLL--SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373
            N      V Q GG++ + + +  +  R +I + A   + ++T+ +        QE E+ 
Sbjct: 293 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH--------QEAEMA 344

Query: 374 QMALLVEESGGLEKL-EALQHHENETVYQKCYKIIS-MAFNDSAENSIENGDTIE 426
           Q A  V    GL  + + L    +  + +    +I  +A   +    +     I 
Sbjct: 345 QNA--VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 397

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  176 bits (448), Expect = 3e-49
 Identities = 46/311 (14%), Positives = 117/311 (37%), Gaps = 20/311 (6%)

Query: 107 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 166
           +   D  +    +P   +LL+DE+     +A   +  ++   + +   + +   +   ++
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 167 LLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 225
            + +   +  A      L N++         +   G +P ++ ++     +  L   +  
Sbjct: 64  TMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITT 121

Query: 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 285
           + NL  ++  A    ++   L  +  L++ T+V+ L+     L  ++ G+ +    ++ +
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181

Query: 286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
           G    LV ++ +     L      V  + +        +++AGG+Q +   L+     +V
Sbjct: 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241

Query: 346 KEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 405
           +   WT+ N++   ++Q                    G L  L  L   ++  V      
Sbjct: 242 QNCLWTLRNLSDAATKQE----------------GMEGLLGTLVQLLGSDDINVVTCAAG 285

Query: 406 IIS-MAFNDSA 415
           I+S +  N+  
Sbjct: 286 ILSNLTCNNYK 296

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  176 bits (447), Expect = 4e-49
 Identities = 65/315 (20%), Positives = 121/315 (38%), Gaps = 9/315 (2%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQ 134
           +PE+ + +   +  +   A     + LSK+       +    +V   V  + + N   T 
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
                 L N+ S   E  + +  +  IP  +++L SP  ++   A   L N+      A+
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLI 253
             +   G + +++AL+       FL      +  L      +            L+N + 
Sbjct: 134 MAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313
             T  + L      L  +S   ++K  A+V+ G +  L   L      ++   L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELN 373
           +   D  T      G L  + +LL S  +N+V  AA  +SN+T  N +    V Q G + 
Sbjct: 252 S---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308

Query: 374 QMALLVEESGGLEKL 388
            +   V  +G  E +
Sbjct: 309 ALVRTVLRAGDREDI 323

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  160 bits (406), Expect = 2e-43
 Identities = 58/373 (15%), Positives = 115/373 (30%), Gaps = 43/373 (11%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
              ++  M++   +  +  T    K+LS         ++EAG +      L D +     
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQ 242

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
              W L N++   ++Q         +   +QLL S  +N+   A   L N+  +  + + 
Sbjct: 243 NCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299

Query: 196 LLLGLGTMPQILALVQPNTPTTFLR-NIVWAISNLCRNKNPAPDFEKIKI---CLPLLNQ 251
           ++  +G +  ++  V        +    + A+ +L      A   +        LP++ +
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359

Query: 252 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 311
           L+H      L      L             + + G +PRLV+LL                
Sbjct: 360 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 419

Query: 312 NIATG---------------------NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 350
                                     + H    +     +    +LL S   NI + AA 
Sbjct: 420 QQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 479

Query: 351 TISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410
            +  + A +    +              +E  G    L  L H  NE V      ++   
Sbjct: 480 VLCEL-AQDKEAAE-------------AIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525

Query: 411 FNDSAENSIENGD 423
             D  ++  +   
Sbjct: 526 SEDKPQDYKKRLS 538

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  104 bits (260), Expect = 3e-24
 Identities = 43/317 (13%), Positives = 91/317 (28%), Gaps = 31/317 (9%)

Query: 83  MKSSNPKMRMIATRSARKMLS--KERHPPIDELIEAGVVPICVELLDDENPNTQFEATWA 140
                  +   A  + R + S  +E     + +     +P+ V+LL   +     +AT  
Sbjct: 316 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 375

Query: 141 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 200
           L    +        +    AIP+ +QLL   H +   + +              + +   
Sbjct: 376 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI--- 432

Query: 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 260
                             +     A+  L R+ +       +   +PL  QL+++     
Sbjct: 433 ------------------VEGCTGALHILARDVHNRIVIRGLN-TIPLFVQLLYSPIENI 473

Query: 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320
                  L  ++    +  +A+   G    L ELL S    + T A   +  ++      
Sbjct: 474 QRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 532

Query: 321 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI---TAGNSRQIDHVIQEGELNQMAL 377
                +   ++    L  +  +   + A   +           RQ D   +         
Sbjct: 533 ---YKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQ 589

Query: 378 LVEESGGLEKLEALQHH 394
                  + + E   HH
Sbjct: 590 DALGMDPMMEHEMGGHH 606

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  201 bits (512), Expect = 1e-57
 Identities = 48/354 (13%), Positives = 135/354 (38%), Gaps = 10/354 (2%)

Query: 17  AGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSP---IK 73
           +GK   E      ++  E  +    +Q F +  +  +D              M P    +
Sbjct: 47  SGKGNPEDDDVDNQVLYEWEQGF--NQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDE 104

Query: 74  MTVPEMIEGMKSSNPKMRMIA--TRSARKMLSKERHPPIDELIEAGVVPICVELLDDENP 131
                  +   +    ++ +A  ++  +  +    +   D  +    +P   +LL+DE+ 
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQ 164

Query: 132 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDG 190
               +A   +  ++   + +   + +   +   ++ + + + +  A   +  L N++   
Sbjct: 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HH 223

Query: 191 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 250
                 +   G +P ++ ++     +  L + +  + NL  ++  A    ++   L  + 
Sbjct: 224 REGLLAIFKSGGIPALVNMLGSPVDSV-LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMV 282

Query: 251 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 310
            L++ T+V+ L+     L  ++ G+ +    ++ +G    LV ++ +     L      V
Sbjct: 283 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342

Query: 311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
             + +        +++AGG+Q +   L+     +V+   WT+ N++   ++Q  
Sbjct: 343 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG 396

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  154 bits (390), Expect = 5e-41
 Identities = 57/369 (15%), Positives = 131/369 (35%), Gaps = 27/369 (7%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           + +M+  +  +N K   I T   +  L+         ++ +G     V ++         
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQI-LAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
             T  +  + S  S     ++ A  +      L+ P   L +   W L N++ D A  ++
Sbjct: 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQE 395

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC-----LPLLN 250
            + GL  +  ++ L+  +     +      +SNL  N N      K+ +C       L+ 
Sbjct: 396 GMEGL--LGTLVQLLGSDDINV-VTCAAGILSNLTCN-NYK---NKMMVCQVGGIEALVR 448

Query: 251 QLIHTTDVE-TLSDICWALSYISDGHNDK---IQAVVDTGVVPRLVELLDSEETTILTAA 306
            ++   D E        AL +++  H D      AV     +P +V+LL       L  A
Sbjct: 449 TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508

Query: 307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366
              +             + + G + ++ +LL  +  +  +  +   +        +++ +
Sbjct: 509 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 568

Query: 367 IQE--GELNQMA------LLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAEN 417
           ++   G L+ +A      +++     +     L +   E + +    ++  +A +  A  
Sbjct: 569 VEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 628

Query: 418 SIENGDTIE 426
           +IE      
Sbjct: 629 AIEAEGATA 637

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  141 bits (357), Expect = 1e-36
 Identities = 46/384 (11%), Positives = 112/384 (29%), Gaps = 34/384 (8%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +  +   +   + ++      +    L         +    G++   V+LL  ++ N   
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWT----LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 417

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIA---GDG 190
            A   L+N+     +  M V     I   ++ +  +    ++ E A  AL ++     D 
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA 477

Query: 191 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 250
             A++ +     +P ++ L+ P +    ++  V  I NL           +    +P L 
Sbjct: 478 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLV 536

Query: 251 QLIHTTDVETLSDICWALSYISDG---------------------HNDKIQAVVDTGVVP 289
           QL+     +T        +                                 +     +P
Sbjct: 537 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP 596

Query: 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
             V+LL S    I   A   +  +A  +    + +   G    + +LL S    +   AA
Sbjct: 597 LFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655

Query: 350 WTISNITAGNSRQIDHVIQEGELNQM--ALLVEESGGLEKLEALQHHENETVYQKCYKII 407
             +  ++    +     +     + +     +  +   +    +        Y++     
Sbjct: 656 AVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSY 715

Query: 408 SMAFNDSAENSIENGDTIEFNPQP 431
               +          D +  +   
Sbjct: 716 RSFHSGGYGQDAMGMDPMMEHEMA 739

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 97.8 bits (243), Expect = 6e-22
 Identities = 41/318 (12%), Positives = 87/318 (27%), Gaps = 25/318 (7%)

Query: 83  MKSSNPKMRMIATRSARKMLSKERHPP--IDELIEAGVVPICVELLDDENPNTQFEATWA 140
                  +   A  + R + S+ +      + +     +P+ V+LL   +     +AT  
Sbjct: 452 RAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511

Query: 141 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 200
           L    +        +    AIP+ +QLL   H +   + +                    
Sbjct: 512 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ--------------- 556

Query: 201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 260
                    V+       +     A+  L R+ +       +   +PL  QL+++     
Sbjct: 557 ------QQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN-TIPLFVQLLYSPIENI 609

Query: 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320
                  L  ++    +  +A+   G    L ELL S    + T A   +  ++      
Sbjct: 610 QRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668

Query: 321 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVE 380
               +       + +    +            +       RQ D   +            
Sbjct: 669 YKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAM 728

Query: 381 ESGGLEKLEALQHHENET 398
               + + E   HH    
Sbjct: 729 GMDPMMEHEMAGHHPGPD 746

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  180 bits (459), Expect = 8e-55
 Identities = 69/193 (35%), Positives = 98/193 (50%), Gaps = 29/193 (15%)

Query: 245 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 304
            LP + Q +++ D + L      LS I+ G N++IQAV+D G +P LV+LL S    IL 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 364
            AL  + NIA+G + Q   VI AG L  + +LLSS    I++EA W +SNI +G + QI 
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 365 HVIQEGEL-----------------------------NQMALLVEESGGLEKLEALQHHE 395
            VI  G L                             N+    V+E+G LEKLE LQ HE
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192

Query: 396 NETVYQKCYKIIS 408
           NE + ++  + + 
Sbjct: 193 NEKIQKEAQEALE 205

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  165 bits (420), Expect = 4e-49
 Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 43/247 (17%)

Query: 111 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
                   +P  V+ L+  +      A   L+ IASG +EQ   VI+A A+P  +QLLSS
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 230
           P+  + ++A WAL NIA  G      ++  G                             
Sbjct: 66  PNEQILQEALWALSNIASGGNEQIQAVIDAG----------------------------- 96

Query: 231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 290
                          LP L QL+ + + + L +  WALS I+ G N++IQAV+D G +P 
Sbjct: 97  --------------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142

Query: 291 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 350
           LV+LL S    IL  AL  + NIA+G + Q   V +AG L+K+++L S     I KEA  
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202

Query: 351 TISNITA 357
            +  + +
Sbjct: 203 ALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  152 bits (386), Expect = 4e-44
 Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 44/240 (18%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +P+M++ + S + +    A R   + ++   +  I  +I+AG +P  V+LL   N     
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQ-IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
           EA WAL+NIASG +EQ   VI+A A+P  +QLLSSP+  + ++A WAL NIA        
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS------- 125

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
                G   QI A++                                   LP L QL+ +
Sbjct: 126 -----GGNEQIQAVIDAG-------------------------------ALPALVQLLSS 149

Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
            + + L +  WALS I+ G N++ QAV + G + +L +L   E   I   A   +  + +
Sbjct: 150 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  100 bits (251), Expect = 1e-24
 Identities = 36/103 (34%), Positives = 55/103 (53%)

Query: 280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 339
                   +P++V+ L+S +   L +ALR +  IA+G + Q   VI AG L  + +LLSS
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 340 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES 382
               I++EA W +SNI +G + QI  VI  G L  +  L+   
Sbjct: 66  PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  183 bits (466), Expect = 3e-54
 Identities = 55/308 (17%), Positives = 112/308 (36%), Gaps = 23/308 (7%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--------- 126
           + +    M +        A     K+   E H     + E G +    ELL         
Sbjct: 34  MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR--HAMNELGGLQAIAELLQVDCEMYGL 91

Query: 127 --DDENPNTQFEATWALTNIASGTSEQTMTVIN-ANAIPKFLQLLSSPHLNLAEQATWAL 183
             D  +   +  A  ALTN+  G      T+ +    +   +  L S   +L +     L
Sbjct: 92  TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151

Query: 184 GNIA-GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN--KNPAPDFE 240
            N++      ++  L  +G++  ++         + L++++ A+ NL  +  +N A    
Sbjct: 152 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 211

Query: 241 KIKICLPLLNQLIH---TTDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVEL 294
                  L+  L +   T  +  +      L  +S     + D  Q + +   +  L++ 
Sbjct: 212 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 271

Query: 295 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 354
           L S   TI++ A  T+ N++  N    + +   G +  +K L+ S    I   +A  + N
Sbjct: 272 LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 331

Query: 355 ITAGNSRQ 362
           + A    +
Sbjct: 332 LMANRPAK 339

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  168 bits (428), Expect = 1e-48
 Identities = 54/341 (15%), Positives = 106/341 (31%), Gaps = 48/341 (14%)

Query: 115 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-- 172
               +      +     +    A   L  + S   E    +     +    +LL      
Sbjct: 30  HEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEM 88

Query: 173 ---------LNLAEQATWALGNIAGDGARARDLLLGL-GTMPQILALVQPNTPTTFLRNI 222
                    + L   A  AL N+       +  L  + G M  ++A ++  +     + I
Sbjct: 89  YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI 147

Query: 223 VWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYIS-DGHN 276
              + NL    +      K  +        L+   +      TL  +  AL  +S     
Sbjct: 148 ASVLRNLSWRADVNS---KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204

Query: 277 DKIQAVVDTGVVPRLVELLDSEETTIL-------TAALRTVGNIATGNDHQTDCVIQAGG 329
           +K       G +  LV  L     T            LR V ++   N+     + +   
Sbjct: 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 264

Query: 330 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLE 389
           LQ + + L S  + IV  A  T+ N++A N +  + +                G +  L+
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM-------------GAVSMLK 311

Query: 390 ALQHHENETVYQKCYKIIS-MAFNDSAE----NSIENGDTI 425
            L H +++ +       +  +  N  A+    N +  G ++
Sbjct: 312 NLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 64.9 bits (158), Expect = 1e-11
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 25/156 (16%)

Query: 274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 333
                         + +    + +     +  A+  +  ++   +H+   + + GGLQ +
Sbjct: 20  CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAI 78

Query: 334 KKLLSSSR-----------VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES 382
            +LL               + + + A   ++N+T G+                A L    
Sbjct: 79  AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV------------ANKATLCSMK 126

Query: 383 GGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAEN 417
           G +  L A    E+E + Q    ++  +++     +
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 162

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  179 bits (455), Expect = 1e-51
 Identities = 64/375 (17%), Positives = 130/375 (34%), Gaps = 27/375 (7%)

Query: 9   DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRN--IDQLDEIEEENVTVIEP 66
           D+ +      +   E R +       +  +  DD+  +R    +  L++I     T  E 
Sbjct: 83  DKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEW 142

Query: 67  TCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL 126
                 +  + +    M +        A     K+   E H     + E G +    ELL
Sbjct: 143 --QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELL 198

Query: 127 -----------DDENPNTQFEATWALTNIASGTSEQTMTVI-NANAIPKFLQLLSSPHLN 174
                      D  +   +  A  ALTN+  G      T+      +   +  L S   +
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258

Query: 175 LAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC--- 230
           L +     L N++      ++  L  +G++  ++         + L++++ A+ NL    
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

Query: 231 -RNKNPAPDFEK-IKICLPLLNQLIHTTDVETLSDICWALSYISD---GHNDKIQAVVDT 285
             NK      +  +   +  L     T  +  +      L  +S     + D  Q + + 
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
             +  L++ L S   TI++ A  T+ N++  N    + +   G +  +K L+ S    I 
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438

Query: 346 KEAAWTISNITAGNS 360
             +A  + N+ A   
Sbjct: 439 MGSAAALRNLMANRP 453

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  106 bits (267), Expect = 2e-25
 Identities = 49/357 (13%), Positives = 115/357 (32%), Gaps = 73/357 (20%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI-EAGVVPICVELLDDENPN-- 132
           V  ++  + + +          +R +L+          + ++G +P+ ++LL   + +  
Sbjct: 34  VYSLLSMLGTHDKD------DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSV 87

Query: 133 ----------TQFEATWALTNIASGTSEQTMTVINANAIPKFLQL--------------- 167
                      +  A+ AL NI     +          +    Q+               
Sbjct: 88  LLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147

Query: 168 ---------LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF 218
                    + +P  +    A   L  ++ D    R  +  LG +  I  L+Q +     
Sbjct: 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYG 206

Query: 219 L----------RNIVWAISNLCRNKNPAPDFEKIKIC-----LPLLNQLIHTTDVETLSD 263
           L          R    A++NL           K  +C     +  L   + +   +    
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVAN----KATLCSMKGCMRALVAQLKSESEDLQQV 262

Query: 264 ICWALSYISDGHNDKIQ-AVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGND-HQ 320
           I   L  +S   +   +  + + G V  L+E   + ++ + L + L  + N++     ++
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322

Query: 321 TDCVIQAGGLQKMKKLLS----SSRVNIVKEAAWTISNIT---AGNSRQIDHVIQEG 370
            D     G L  +   L+    ++ + I++     + N++   A N      + +  
Sbjct: 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 36/218 (16%), Positives = 79/218 (36%), Gaps = 18/218 (8%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQ 134
           +  ++  +KS +  ++ +     R +  +        L E G V   +E   + +  +T 
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 135 FEATWALTNIASGTSEQTMTVINAN-AIPKFLQLLSSPH----LNLAEQATWALGNIAGD 189
                AL N+++  +E    +   + A+   +  L+       L + E     L N++  
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364

Query: 190 GAR---ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC- 245
            A     R +L     +  +L  ++ ++ T  + N    + NL    NP    ++  +  
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTI-VSNACGTLWNLSAR-NPK---DQEALWD 419

Query: 246 ---LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 280
              + +L  LIH+           AL  +      K +
Sbjct: 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  136 bits (343), Expect = 8e-36
 Identities = 34/303 (11%), Positives = 92/303 (30%), Gaps = 20/303 (6%)

Query: 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 178
           +P  V+ L  ++   Q    + + +           V     I K + LL SP+ N+ + 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 179 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238
           A  AL N+       +        + + ++L++        + +   + NL        +
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 239 FEKIKICLPLLNQLI----------------HTTDVETLSDICWALSYISDGHNDKIQAV 282
              I   LP+L   +                   D E   +    L  +S     +    
Sbjct: 124 L--IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 283 VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSR 341
             +G++  L+  + +               +   ++       +     ++++    ++ 
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 342 VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEK-LEALQHHENETVY 400
                   ++  +    N+     + +E    + +  +  S  +   L  +   + +   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 401 QKC 403
           + C
Sbjct: 302 EAC 304

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.9 bits (196), Expect = 2e-16
 Identities = 54/360 (15%), Positives = 118/360 (32%), Gaps = 50/360 (13%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQ 134
           + ++++ ++S N  ++  A   A + L         E      +   V LL    N   Q
Sbjct: 46  ICKLVDLLRSPNQNVQQAAA-GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ 104

Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ---------------- 178
            + T  L N++S    +    + A+A+P     +  P     +                 
Sbjct: 105 KQLTGLLWNLSSTDELKE--ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162

Query: 179 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF-----LRNIVWAISNLCRNK 233
           AT  L N++   A  + +    G +  ++A VQ     +      + N +  + NL    
Sbjct: 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRL 222

Query: 234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA------------ 281
           +      ++      L         E  S  C++       +N+                
Sbjct: 223 D-----AEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG 277

Query: 282 -VVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDC-----VIQAGGLQKMK 334
            +  +  +   + L+  S++   L A    + N+       +        ++  GL ++ 
Sbjct: 278 WLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIA 337

Query: 335 KLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH 394
           +LL S   ++V+  A  +SN+ + +      +  +       LL   +G     E +   
Sbjct: 338 RLLQSGNSDVVRSGASLLSNM-SRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 76.8 bits (188), Expect = 3e-15
 Identities = 47/357 (13%), Positives = 106/357 (29%), Gaps = 47/357 (13%)

Query: 76  VPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-------- 126
           + E +  ++ + N +++   T     +        + E + A  +P+  + +        
Sbjct: 88  IREAVSLLRRTGNAEIQKQLTGLLWNLS---STDELKEELIADALPVLADRVIIPFSGWC 144

Query: 127 --------DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS------SPH 172
                   +  +P   F AT  L N++S  + +      +  I   +  +          
Sbjct: 145 DGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCD 204

Query: 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFL--------RNIVW 224
               E     L N++                    A  + ++   F          N   
Sbjct: 205 DKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDC 264

Query: 225 AISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK-----I 279
            +     N   +            LN +  +    TL     AL  ++            
Sbjct: 265 PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ 324

Query: 280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 339
              +    +P++  LL S  + ++ +    + N++         V+      ++ +LL+S
Sbjct: 325 LIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTS 382

Query: 340 S------RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390
                    +I+  A +T+ N+ A   +          LN +  L   S   +  EA
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 75.3 bits (184), Expect = 8e-15
 Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 29/262 (11%)

Query: 114 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL 173
             +G++   +  + +    ++ +       +    +             +     ++ + 
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR-QLEYNARNA 240

Query: 174 NLAEQATWALGNIAGDG---------------ARARDLLLGLGTMPQILALVQPNTPTTF 218
              + +T    N +                   +    L     +   L L+  +     
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 219 LRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISD 273
           L     A+ NL  +K          I      LP + +L+ + + + +      LS +S 
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS- 359

Query: 274 GHNDKIQAVVDTGVVPRLVELLDSEETT------ILTAALRTVGNIATGNDHQTDCVIQA 327
             +  +  V+   V P +  LL S          IL++A  TV N+             +
Sbjct: 360 -RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS 418

Query: 328 GGLQKMKKLLSSSRVNIVKEAA 349
             L  +  L  SS      EAA
Sbjct: 419 SMLNNIINLCRSSASPKAAEAA 440

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 13/172 (7%)

Query: 74  MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDE-----LIEAGVVPICVELLDD 128
             +   +  M  S     + A   A + L+  +            ++   +P    LL  
Sbjct: 283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS 342

Query: 129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN------LAEQATWA 182
            N +        L+N++         V+     P+  +LL+S   N      +   A + 
Sbjct: 343 GNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYT 400

Query: 183 LGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234
           + N+     +          +  I+ L + +            +S++  +K 
Sbjct: 401 VRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  137 bits (345), Expect = 2e-35
 Identities = 56/403 (13%), Positives = 119/403 (29%), Gaps = 64/403 (15%)

Query: 73  KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
           +  + E +   +     +      S   + S  +  P         +P  + +L      
Sbjct: 4   EFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDA 63

Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGA 191
            +  A   L ++     +    V     IP  + LL  P   +   A  AL NI+ G   
Sbjct: 64  VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123

Query: 192 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 251
             +  +     +P ++ L++          I   + NL  + +   +   +   L  L  
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI--VDHALHALTD 181

Query: 252 LI------------------HTTDVETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLV 292
            +                  H      L++    L  +S   ++  + + +  G+V  L+
Sbjct: 182 EVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALI 241

Query: 293 ELLDSE-------------------------------ETTILTAALRTVGNIATGNDHQT 321
            ++ +E                                     AA     N  T      
Sbjct: 242 FIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301

Query: 322 DCVIQAGGLQKMKKLLSSSRVNIVKE-AAWTISNITAGNSRQIDHVIQEGELNQMALLVE 380
           + + Q   ++    LL  S+   + E +A  I N+ AG                +   + 
Sbjct: 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY---------GRYIRSALR 352

Query: 381 ESGGLEKLEALQHHENETVYQK-CYKIISMAFNDSAENSIENG 422
           +   L  +  L  +E+E V +     + ++A +   +  I   
Sbjct: 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKH 395

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  106 bits (266), Expect = 4e-25
 Identities = 62/423 (14%), Positives = 140/423 (33%), Gaps = 68/423 (16%)

Query: 46  KRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKE 105
           +R ++  LD + +       P   +  +  +PE+I  +      ++  A  +  + L   
Sbjct: 25  ERGSLASLDSLRKGG-----PPPPNWRQPELPEVIAMLGFRLDAVKSNAA-AYLQHLCYR 78

Query: 106 RHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MTVINANAIPKF 164
                 ++ +   +P+ V LLD         A  AL NI+ G  +   + + N + +P  
Sbjct: 79  NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 165 LQLL-SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF----- 218
           ++LL  +  ++L E  T  L N++   +  +  ++          ++ P++         
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWEREPNED 197

Query: 219 -----------LRNIVWAISNLCRNKNPA--------------------------PDFEK 241
                      L N    + N+   ++ A                           D + 
Sbjct: 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL 257

Query: 242 IKICLPLLNQLIHTTDVETLSD------ICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295
           ++ C+ LL  L +    E               +          + +    VV   + LL
Sbjct: 258 VENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLL 317

Query: 296 -DSEETTILTAALRTVGNIATGNDHQTD----CVIQAGGLQKMKKLLSSSRVNIVKEAAW 350
            +S+   IL A+   + N+  G           + Q   L  +  LL++    +VK A+ 
Sbjct: 318 KESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG 377

Query: 351 TISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 410
            + N+      +   +I +  +  +   +       +  +  +   +TV      I  + 
Sbjct: 378 ALRNLAVDARNKE--LIGKHAIPNLVKNLPGG----QQNSSWNFSEDTVISILNTINEVI 431

Query: 411 FND 413
             +
Sbjct: 432 AEN 434

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 74.2 bits (181), Expect = 2e-14
 Identities = 54/387 (13%), Positives = 116/387 (29%), Gaps = 80/387 (20%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQ 134
           +P ++  +     ++ + A  + + +           +     VP  V LL    + +  
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151

Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQA--------------- 179
              T  L N++S   +     I  +A+      +  PH     +                
Sbjct: 152 EVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 180 ---TWALGNIAGDGARARDLLLGLGTMPQIL------ALVQPNTPTTFLRNIVWAISNL- 229
                 L N++ + + AR  L     +   L       + Q ++ +  + N V  + NL 
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 230 -------------------------CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 264
                                               + ++    ++ L  +     L   
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 265 CWALSYISDGH----NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 320
             A+  +  G          A+     +  + +LL +E   ++ AA   + N+A    ++
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389

Query: 321 TDCVIQAGGLQKMKKLLSSSRVN--------IVKEAAWTISNITAGNSRQIDHVIQEGEL 372
              +I    +  + K L   + N         V     TI+ + A N             
Sbjct: 390 E--LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN------------- 434

Query: 373 NQMALLVEESGGLEKLEALQHHENETV 399
            + A  + E+ G+EKL  +    N + 
Sbjct: 435 LEAAKKLRETQGIEKLVLINKSGNRSE 461

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 55.7 bits (133), Expect = 1e-08
 Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 14/169 (8%)

Query: 85  SSNPKMRMIATRSARKMLSKERHPPID---ELIEAGVVPICVELLDDENPNTQFEATWAL 141
           S  P +   +  + + + +            L +   +    +LL +E+      A+ AL
Sbjct: 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL 379

Query: 142 TNIASGTSEQTMTVINANAIPKFLQLLSSPHLN--------LAEQATWALGNIAGDGARA 193
            N+A     +   +I  +AIP  ++ L     N                +  +  +   A
Sbjct: 380 RNLAVDARNK--ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437

Query: 194 RDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEK 241
              L     + +++ + +  N     +R     +  +   K      EK
Sbjct: 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEK 486

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  131 bits (330), Expect = 3e-35
 Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 2/226 (0%)

Query: 112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 171
            ++   + P   E     +   +  A   L ++             +       + L + 
Sbjct: 35  RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 94

Query: 172 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231
              L  +A   +G  + + A  ++ +LGLG + ++L L+  +   T     ++AIS L R
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 291
            +              +L + +     +      + L  +  GH +    +   G+V +L
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214

Query: 292 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 337
           V L+ +E +      L  + ++ T          +      +++LL
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELL 258

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 69.7 bits (170), Expect = 2e-13
 Identities = 18/125 (14%), Positives = 50/125 (40%), Gaps = 2/125 (1%)

Query: 84  KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTN 143
           + +   +R+ A   A   L +E+   + + +      + +  +  +    + ++ + L N
Sbjct: 135 RDACDTVRVKAL-FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQN 193

Query: 144 IASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-RDLLLGLGT 202
           +  G  E   T+ +   + + + L+ + H    E    AL ++  D  +  R+       
Sbjct: 194 LLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG 253

Query: 203 MPQIL 207
           + ++L
Sbjct: 254 LEELL 258

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  131 bits (331), Expect = 3e-33
 Identities = 47/351 (13%), Positives = 102/351 (29%), Gaps = 49/351 (13%)

Query: 102 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM-------- 153
           L+ +       + +   +   ++L    N +  +       N+ +   +Q M        
Sbjct: 406 LTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELA 465

Query: 154 ------------------------TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 189
                                    + N         L  +   N  E     L  + G 
Sbjct: 466 KFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525

Query: 190 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL--- 246
               R  ++  G +  +L +    T     R+   A++ +    NP   F   +      
Sbjct: 526 -KELRGKVVQEGGVKALLRMALEGTEKG-KRHATQALARIGITINPEVSFSGQRSLDVIR 583

Query: 247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 306
           PLLN L          +   AL+ ++  +    Q ++    V ++   L  +   +  AA
Sbjct: 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643

Query: 307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 366
            + + N+    D           ++ +  L            A  ++ IT+ + +  + +
Sbjct: 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI 703

Query: 367 IQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN 417
           +              +  L+ L  L  + +  V  +   II    N   E 
Sbjct: 704 L------------AIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI 742

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  120 bits (301), Expect = 3e-29
 Identities = 41/318 (12%), Positives = 103/318 (32%), Gaps = 10/318 (3%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
              +    K+ +   + +  R    +   +      ++++ G V   + +  +     + 
Sbjct: 497 TTALCALAKTESHNSQELIARVLNAVCGLKEL--RGKVVQEGGVKALLRMALEGTEKGKR 554

Query: 136 EATWALTNIASGTSEQTM--TVINANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGAR 192
            AT AL  I    + +       + + I   L LL          ++  AL N+A     
Sbjct: 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614

Query: 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252
            R  ++    + +I   +         R     + NL  +++    FE     +  L  L
Sbjct: 615 VRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL 673

Query: 253 IHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVG 311
               D ET +    AL+ I+       + ++     +  L  L+ +    +    +  + 
Sbjct: 674 CEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733

Query: 312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGE 371
           N+    +     + +   ++ +  L         K        + A    +I   I+  +
Sbjct: 734 NMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI---IERSD 790

Query: 372 LNQMALLVEESGGLEKLE 389
             ++  +  E+  + ++ 
Sbjct: 791 NAEIPDVFAENSKISEII 808

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  100 bits (250), Expect = 8e-23
 Identities = 40/323 (12%), Positives = 88/323 (27%), Gaps = 44/323 (13%)

Query: 88  PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG 147
                IA+    ++     +          +     + L   +  ++   T A+T + +G
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 148 TSEQTMTVINA-NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 206
             +    V+     +   L + ++        A   L   +    +A+ L      +  +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG--VDIL 335

Query: 207 LALVQPNTPTTFLRNIVWAISNLCRNKN------PAPDFEKIKICLPLLNQLIHTT-DVE 259
             L             +  +  L           P  D   +K+       LI    D +
Sbjct: 336 KRLYHSKNDGI-RVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 260 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 319
                   L+Y++     K + + D   +  L++L      + L   + T  N+    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 320 QT--------------------------------DCVIQAGGLQKMKKLLSSSRVNIVKE 347
           Q                                   +   G    +  L  +   N  + 
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQEL 514

Query: 348 AAWTISNITAGNSRQIDHVIQEG 370
            A  ++ +  G       V+QEG
Sbjct: 515 IARVLNAV-CGLKELRGKVVQEG 536

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 77.6 bits (190), Expect = 2e-15
 Identities = 29/224 (12%), Positives = 60/224 (26%)

Query: 70  SPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE 129
                 +  ++  ++     +    +  A   L+         +I+   V      L ++
Sbjct: 576 QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED 635

Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 189
           +      A   L N+        M   N + +     L        A     AL  I   
Sbjct: 636 HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695

Query: 190 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 249
             +  + +L + +   IL  +  N         +  I N+                + LL
Sbjct: 696 SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELL 755

Query: 250 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE 293
           + L    D         A   ++     +I    D   +P +  
Sbjct: 756 SGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  106 bits (267), Expect = 6e-27
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 21/202 (10%)

Query: 115 EAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 172
               +   V +L  D   P+    A   + +     SE    V     I K LQLL   +
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65

Query: 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232
            ++      AL N+  +    +  +  L  +P++L +++        + I   + NL  N
Sbjct: 66  EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 233 KNPAPDFEKIKICLPLLNQLI----------------HTTDVETLSDICWALSYISDGHN 276
                    I   L  L + I                   D +   ++   L  +S    
Sbjct: 126 DKLKNLM--ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGA 183

Query: 277 DKIQAVVDT-GVVPRLVELLDS 297
           D  +A+    G++  LV  +  
Sbjct: 184 DGRKAMRRCDGLIDSLVHYVRG 205

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 26/189 (13%), Positives = 63/189 (33%), Gaps = 20/189 (10%)

Query: 202 TMPQILA-LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 260
           T+ + ++ L   +   + +      I + C  K+ A         +  L QL+   + + 
Sbjct: 9   TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68

Query: 261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDH 319
              +C AL  +    ND    V +   VPRL+++L  + +          + N+++ +  
Sbjct: 69  QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128

Query: 320 QTDCVIQAGGLQ----------------KMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 363
           +   ++    L                    K       +I       + N+++  +   
Sbjct: 129 KN--LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGR 186

Query: 364 DHVIQEGEL 372
             + +   L
Sbjct: 187 KAMRRCDGL 195

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 61.9 bits (150), Expect = 4e-11
 Identities = 16/149 (10%), Positives = 54/149 (36%), Gaps = 1/149 (0%)

Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 315
                +S     + +     ++  + V     + +L++LL  +   +  A    + N+  
Sbjct: 22  MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81

Query: 316 GNDHQTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQ 374
            ++     V +  G+ ++ ++L  +R +   K+    + N+++ +  +   + +      
Sbjct: 82  EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLT 141

Query: 375 MALLVEESGGLEKLEALQHHENETVYQKC 403
             +++  SG  E      +   +      
Sbjct: 142 ENIIIPFSGWPEGDYPKANGLLDFDIFYN 170

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 55.3 bits (133), Expect = 6e-09
 Identities = 15/105 (14%), Positives = 45/105 (42%), Gaps = 2/105 (1%)

Query: 288 VPRLVELLDSEET--TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
           + R V +L+++    + ++AA   + +           V Q  G+ K+ +LL     ++ 
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 346 KEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390
           +     + N+   ++     V +   + ++  +++++  LE  + 
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQ 114

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 27/42 (64%), Positives = 31/42 (73%)

Query: 9  DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNI 50
           R   FKN GK   EMRR+R E+NVELRKA KDDQ+ KRRN+
Sbjct: 2  ARLHRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNV 43

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 69.7 bits (171), Expect = 6e-14
 Identities = 39/246 (15%), Positives = 71/246 (28%), Gaps = 57/246 (23%)

Query: 75  TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQ 134
            V   I+ ++  +  +R  A  +  K+  +              V   ++ L DE+   +
Sbjct: 20  KVEMYIKNLQDDSYYVRRAAAYALGKIGDER------------AVEPLIKALKDEDAWVR 67

Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
             A  AL  I               A+   ++ L      + + A  ALG I     RA 
Sbjct: 68  RAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--DERAV 114

Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
           + L+         AL        F+R  + A   L    +           +  L + + 
Sbjct: 115 EPLIK--------AL---KDEDWFVR--IAAAFALGEIGDER--------AVEPLIKALK 153

Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
             D         AL  I               V   + +L ++        A+  +    
Sbjct: 154 DEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 202

Query: 315 TGNDHQ 320
           + N H 
Sbjct: 203 SFNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 41/250 (16%), Positives = 74/250 (29%), Gaps = 56/250 (22%)

Query: 113 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 172
             +   V + ++ L D++   +  A +AL  I               A+   ++ L    
Sbjct: 15  RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED 63

Query: 173 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 232
             +   A  ALG I     RA + L+         AL   +    ++R    A   L + 
Sbjct: 64  AWVRRAAADALGQIG--DERAVEPLIK--------ALKDED---GWVR--QSAAVALGQI 108

Query: 233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 292
            +           +  L + +   D        +AL  I            D   V  L+
Sbjct: 109 GDER--------AVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPLI 149

Query: 293 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 352
           + L  E+  +  +A   +G I                   M+KL  +      K A   +
Sbjct: 150 KALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198

Query: 353 SNITAGNSRQ 362
               + N   
Sbjct: 199 ETHKSFNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 43/244 (17%), Positives = 79/244 (32%), Gaps = 57/244 (23%)

Query: 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT 216
           +   +  +++ L      +   A +ALG I  +  RA + L        I AL   +   
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--RAVEPL--------IKALKDEDAWV 66

Query: 217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 276
              R    A+  +    +           +  L + +   D         AL  I     
Sbjct: 67  R--RAAADALGQI---GDER--------AVEPLIKALKDEDGWVRQSAAVALGQIG---- 109

Query: 277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 336
                  D   V  L++ L  E+  +  AA   +G I  G++   + +I+A         
Sbjct: 110 -------DERAVEPLIKALKDEDWFVRIAAAFALGEI--GDERAVEPLIKA--------- 151

Query: 337 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-----EGELNQMALLVEESGGLEKLEAL 391
           L      + + AA  +  I  G  R    + +      G   ++A+       LE  ++ 
Sbjct: 152 LKDEDGWVRQSAADALGEI--GGERVRAAMEKLAETGTGFARKVAVN-----YLETHKSF 204

Query: 392 QHHE 395
            HH 
Sbjct: 205 NHHH 208

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 67.9 bits (166), Expect = 6e-13
 Identities = 37/283 (13%), Positives = 76/283 (26%), Gaps = 54/283 (19%)

Query: 86  SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA 145
           SN   +  A++    + ++ +    DEL            LDD N   +  +   L    
Sbjct: 2   SNTYQKRKASK-EYGLYNQCKKLNDDELFRL---------LDDHNSLKRISSARVLQLRG 51

Query: 146 SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ 205
                        +A+   ++  S  +    +   + LG I        ++   L     
Sbjct: 52  G-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL----N 96

Query: 206 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDIC 265
            +AL   +         + + +  C+              +                   
Sbjct: 97  NMALNDKSACV--RATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATA 149

Query: 266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 325
           +A+S I+           D   +P L+ LL      +   A   +      N    DC +
Sbjct: 150 FAISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFV 198

Query: 326 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
           +          L      +  EA   +S     + R +  +  
Sbjct: 199 EM---------LQDKNEEVRIEAIIGLSYR--KDKRVLSVLCD 230

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 64.4 bits (157), Expect = 9e-12
 Identities = 31/296 (10%), Positives = 79/296 (26%), Gaps = 58/296 (19%)

Query: 73  KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
           K+   E+   +   N   R+ + R  +    ++             V + +E   D+N  
Sbjct: 22  KLNDDELFRLLDDHNSLKRISSARVLQLRGGQD------------AVRLAIEFCSDKNYI 69

Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 192
            +    + L  I      +       N        L+     +   A  +          
Sbjct: 70  RRDIGAFILGQIKICKKCEDNVFNILNN-----MALNDKSACVRATAIESTAQRCKKNPI 124

Query: 193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 252
               ++      Q          +T +R        +    + A         +PLL  L
Sbjct: 125 YSPKIV-----EQSQITA--FDKSTNVR--RATAFAISVINDKAT--------IPLLINL 167

Query: 253 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 312
           +   + +  +   +A++              ++ +    VE+L  +   +   A+  +  
Sbjct: 168 LKDPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVRIEAIIGLSY 218

Query: 313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 368
                  +   V+       +   L  + V    +       +  G+   +  +  
Sbjct: 219 R------KDKRVLSV-----LCDELKKNTV--YDDIIEAAGEL--GDKTLLPVLDT 259

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 65.9 bits (160), Expect = 2e-12
 Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 22/203 (10%)

Query: 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL-SSPHLNLA 176
           V+   +ELLDD+       A   +  IA    +    +     + K   LL  S  + L 
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLT 87

Query: 177 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 236
           ++   A G +A +        L    +P + A  +     T   N+ +A+  + +  NP 
Sbjct: 88  QEIAKAFGQMAKEKPE-----LVKSMIPVLFANYRIGDEKT-KINVSYALEEIAKA-NP- 139

Query: 237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 296
                +   +     ++ + + E        +  + +     +        +PR++ LL 
Sbjct: 140 ---MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP-----FLPRIINLLH 191

Query: 297 SEETTILTAALRTVGNIATGNDH 319
             +  +  +A+  + ++AT ND 
Sbjct: 192 DGDEIVRASAVEALVHLATLNDK 214

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 61.6 bits (149), Expect = 6e-11
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           + ++IE +      +   A      +    +     +L E  +  +   L   E      
Sbjct: 34  LKKLIELLDDDLWTVVKNAISIIMVIA---KTRE--DLYEPMLKKLFSLLKKSEAIPLTQ 88

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
           E   A   +A    E        + IP                 ++AL  IA        
Sbjct: 89  EIAKAFGQMAKEKPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA 143

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
            ++        ++++            +  I  +  N      F+ +   LP +  L+H 
Sbjct: 144 SIV-----RDFMSMLSSKNRED-KLTALNFIEAMGEN-----SFKYVNPFLPRIINLLHD 192

Query: 256 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
            D    +    AL +++  ++   + V+      + +E L+   + +       +  + 
Sbjct: 193 GDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRLL 245

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 63.9 bits (156), Expect = 4e-12
 Identities = 37/241 (15%), Positives = 70/241 (29%), Gaps = 57/241 (23%)

Query: 75  TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQ 134
            V   I+ ++  +  +R  A  +  K+  +              V   ++ L DE+   +
Sbjct: 15  KVEMYIKNLQDDSYYVRRAAAYALGKIGDER------------AVEPLIKALKDEDAWVR 62

Query: 135 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
             A  AL  I               A+   ++ L      + + A  ALG I     RA 
Sbjct: 63  RAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--DERAV 109

Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
           + L+         AL   +    F+R  + A   L    +           +  L + + 
Sbjct: 110 EPLIK--------ALKDED---WFVR--IAAAFALGEIGDER--------AVEPLIKALK 148

Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
             D         AL  I               V   + +L ++        A+  +    
Sbjct: 149 DEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197

Query: 315 T 315
           +
Sbjct: 198 S 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 42/244 (17%), Positives = 73/244 (29%), Gaps = 56/244 (22%)

Query: 112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 171
              +   V + ++ L D++   +  A +AL  I               A+   ++ L   
Sbjct: 9   HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE 57

Query: 172 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231
              +   A  ALG I GD  RA + L+         AL        ++R    A   L +
Sbjct: 58  DAWVRRAAADALGQI-GD-ERAVEPLIK--------AL---KDEDGWVR--QSAAVALGQ 102

Query: 232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 291
             +           +  L + +   D        +AL  I            D   V  L
Sbjct: 103 IGDER--------AVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPL 143

Query: 292 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 351
           ++ L  E+  +  +A   +G I                   M+KL  +      K A   
Sbjct: 144 IKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192

Query: 352 ISNI 355
           +   
Sbjct: 193 LETH 196

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 58.8 bits (143), Expect = 6e-11
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 26/125 (20%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +      M   N  +R   + +    LS+      + L+E+         L +E+   + 
Sbjct: 14  LVPRGSHMADENKWVRRDVSTA----LSRMGDEAFEPLLES---------LSNEDWRIRG 60

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
            A W + N             +  A+   ++LL      +   A  +L  I G+  R R 
Sbjct: 61  AAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE--RVRA 107

Query: 196 LLLGL 200
            +  L
Sbjct: 108 AMEKL 112

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 57.5 bits (138), Expect = 6e-09
 Identities = 39/300 (13%), Positives = 99/300 (33%), Gaps = 23/300 (7%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +P ++  M   + +++        ++          +    GVV  C+  L D +P    
Sbjct: 413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVAT 471

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-----HLNLAEQATWALGNIAGDG 190
             +W + N+    +E T + I          L+ +        N    A  AL  +  + 
Sbjct: 472 NCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMV-EY 530

Query: 191 ARARDLLLGLGTMPQILALVQPNTPTTF-------------LRNIVWAISNLCRNKNPAP 237
           A              ++  +                     L++ +  +      K+P+ 
Sbjct: 531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS 590

Query: 238 DFEKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 296
                 + + L  +L+   D   +  D+ +A+S ++       +  ++T   P L++ L+
Sbjct: 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALN 649

Query: 297 SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA-WTISNI 355
             ++ +   A+  + +I+   +        A      + + + +    +K A      +I
Sbjct: 650 QVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDI 709

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 51.7 bits (123), Expect = 3e-07
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 7/143 (4%)

Query: 118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 177
           V+    + +  +N   +  A  A  +I  G  +   T     A+P  L L++   L + E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429

Query: 178 QATWALGNIA---GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234
              W +G IA    +    +  L G+  +   L  +Q +       N  W I NL     
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGV--VQACLIGLQDHPKVA--TNCSWTIINLVEQLA 485

Query: 235 PAPDFEKIKICLPLLNQLIHTTD 257
            A           L++ LI   +
Sbjct: 486 EATPSPIYNFYPALVDGLIGAAN 508

>1qgr_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} Length = 27

 Score = 44.3 bits (104), Expect = 9e-07
 Identities = 19/27 (70%), Positives = 23/27 (85%)

Query: 25 RRKRCEMNVELRKAHKDDQLFKRRNID 51
          RR+R E+NVELRKA KDDQ+ KRRN+ 
Sbjct: 1  RRRRIEVNVELRKAKKDDQMLKRRNVS 27

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 38/300 (12%), Positives = 85/300 (28%), Gaps = 52/300 (17%)

Query: 111 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
             ++   ++      + + +PN + +    + NI   +      +    A+   L+ L++
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLAN 509

Query: 171 P---HLNLAEQATWALGN--IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 225
                  +      AL    I  +          L  +P +  L+  +TP          
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569

Query: 226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI--QAVV 283
              L        ++E +   L L N                 L+       +++    V 
Sbjct: 570 QIKL------TDNYEAL---LALTN-----------------LASSETSDGEEVCKHIVS 603

Query: 284 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG------LQKMKKLL 337
                  +  L+  E   +  + L  + N+ +                       + KLL
Sbjct: 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL 663

Query: 338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENE 397
             S V   +  A   +NI       I  + +E        L+ +   +E    +   + +
Sbjct: 664 QLSDVESQRAVAAIFANIAT----TIPLIAKE--------LLTKKELIENAIQVFADQID 711

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 45/327 (13%), Positives = 89/327 (27%), Gaps = 57/327 (17%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
                       P +R  A     +         +   I    +P+   L  DE  + + 
Sbjct: 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI----IPMFSNLASDEQDSVRL 221

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA---GDGAR 192
            A  A  NIA    ++    + A  +P   Q        +          +    G    
Sbjct: 222 LAVEACVNIAQLLPQED---LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEIT 278

Query: 193 ARDLLLGLGTMPQ-----------------ILALVQPNTPTTFLRNIVWAISNLCRNKNP 235
             DL+     + +                    L         +  I+  I  L  + N 
Sbjct: 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQ 338

Query: 236 -------------APDFEK---IKICLPLLNQLIHTTDVETLSDICWALSYISD--GHND 277
                        +P   K   I+  LPL    +     E   +I   L  +++  G   
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ 398

Query: 278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT--GNDHQTDCVIQAGGLQKMKK 335
             Q+     ++P +VEL +  +  +  A +  +  +A   G +   + +           
Sbjct: 399 LSQS-----LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL-----CMA 448

Query: 336 LLSSSRVNIVKEAAWTISNITAGNSRQ 362
            L      I + A   +  +     ++
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE 475

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 29/282 (10%), Positives = 87/282 (30%), Gaps = 26/282 (9%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +  +I+ +++ + ++R+ +    +K+ +      ++      ++P   + + DE+     
Sbjct: 12  IAVLIDELRNEDVQLRLNS---IKKLSTIALALGVERTRSE-LLPFLTDTIYDEDE-VLL 66

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG--DGARA 193
                L    +              +P    L +     + ++A  +L  I+     +  
Sbjct: 67  ALAEQLGTFTTLVGGPE---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDL 123

Query: 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 253
               + L     +  L   +  T+  R     + ++C  +  +    ++         L 
Sbjct: 124 EAHFVPL-----VKRLAGGDWFTS--RTSACGLFSVCYPRVSSAVKAEL---RQYFRNLC 173

Query: 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313
                         L   +          V + ++P    L   E+ ++   A+    NI
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230

Query: 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355
           A          ++A  +  +++        +    A   + +
Sbjct: 231 A---QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTEL 269

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 56/336 (16%), Positives = 97/336 (28%), Gaps = 115/336 (34%)

Query: 15  KNAGKSFDEMRRKRCEMN-------VELRKAHKD--DQLFKRRNIDQLDEIEEENVTVIE 65
           K       ++ R+    N        E  +      D  +K  N D+L  I E ++ V+E
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLE 367

Query: 66  PTCM-------------SPIKMTVPEMI-EGMKSSNPKMRMIATRSARKMLSKERHPPID 111
           P                + I   +  +I   +  S+    ++  +  +  L  E+ P   
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV--MVVVNKLHKYSLV-EKQP--- 421

Query: 112 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM--TVINANAIPKFLQL-- 167
              +   + I         P+   E    L N      E  +  ++++   IPK      
Sbjct: 422 ---KESTISI---------PSIYLELKVKLEN------EYALHRSIVDHYNIPKTFDSDD 463

Query: 168 LSSP------------HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP 215
           L  P            HL   E                R + L                 
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHP--------ERMTLFRMVFLDFR-------------- 501

Query: 216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 275
             FL                     KI+      N      +  TL  + +   YI D  
Sbjct: 502 --FLEQ-------------------KIRHDSTAWNASGSILN--TLQQLKFYKPYICDND 538

Query: 276 ND---KIQAVVDTGVVPRLVE-LLDSEETTILTAAL 307
                 + A++D   +P++ E L+ S+ T +L  AL
Sbjct: 539 PKYERLVNAILD--FLPKIEENLICSKYTDLLRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 75/535 (14%), Positives = 154/535 (28%), Gaps = 195/535 (36%)

Query: 8   IDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTV---- 63
           I+++    N  + F +    R +  ++LR+A     L + R          +NV +    
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-----LLELRP--------AKNVLIDGVL 159

Query: 64  --------------IEPTCMSP-----IKM-------TVPEMIEGM-------------K 84
                          +  C        + +       TV EM++ +              
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 85  SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEA------ 137
           SSN K+R+ + ++  + L K +      L+           L + +N    + A      
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV-----------LLNVQNAKA-WNAFNLSCK 267

Query: 138 TWALT---NIASGTSEQTMTVINANAIPK----------FLQLLSSPHLNLAEQATWALG 184
               T    +    S  T T I+ +               L+ L     +L  +      
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL--TT 325

Query: 185 N---IAGDGARARDLL--------LGLGTMPQI-------------------LALVQPNT 214
           N   ++      RD L        +    +  I                   L++  P+ 
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385

Query: 215 --PTTFLRNIVWA---------ISNLCRN-----KNPAPDFEKI-----KICLPLLNQL- 252
             PT  L +++W          + N         K P      I     ++ + L N+  
Sbjct: 386 HIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 253 IHTT-----------DVETLSD------ICWALSYISDGHNDKIQAVVDTGVVPRLVELL 295
           +H +           D + L            + +    H   I+      +   +   L
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMV--FL 498

Query: 296 DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 355
           D      L   +R        +    + + Q   L+  K                 I + 
Sbjct: 499 DFR---FLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPY---------------ICDN 537

Query: 356 TAGNSRQID---HVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 407
                R ++     + + E N   L+  +   L ++ AL   E+E ++++ +K +
Sbjct: 538 DPKYERLVNAILDFLPKIEEN---LICSKYTDLLRI-ALM-AEDEAIFEEAHKQV 587

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 28/207 (13%), Positives = 64/207 (30%), Gaps = 11/207 (5%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +  ++E     +   R+ A  +  ++L +        ++E  +    +  L  EN     
Sbjct: 35  LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVF-INALSQENEKVTI 93

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 195
           +A  AL  +       + T + A      + LL SP   +  +    L  +         
Sbjct: 94  KALRALGYLVKDVPMGSKTFLKA--AKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLV 151

Query: 196 LLLGLGTMPQILALVQPNTPTTFL--------RNIVWAISNLCRNKNPAPDFEKIKICLP 247
                  +       +      FL           +  I +   +     +   +++ L 
Sbjct: 152 RTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALD 211

Query: 248 LLNQLIHTTDVETLSDICWALSYISDG 274
           +L + +    +E +      +S I DG
Sbjct: 212 VLEKALSFPLLENVKIELLKISRIVDG 238

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 9/78 (11%), Positives = 34/78 (43%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
              ++E + + NP ++        + L++ +   +++ +   +    V+ L++ +P  + 
Sbjct: 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRD 194

Query: 136 EATWALTNIASGTSEQTM 153
            +  AL  +     ++ +
Sbjct: 195 SSAEALGTLIKLMGDKAV 212

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 35/264 (13%), Positives = 83/264 (31%), Gaps = 23/264 (8%)

Query: 49  NIDQLDEIEEENVTVIEPTCMSPIKMTVPEMI---------EGMKSSNPKMR---MIATR 96
                D I + N+       +  +     + +         E +      ++   ++   
Sbjct: 325 GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 384

Query: 97  SARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI 156
           +  +   +   P + E     ++P  ++ L D+    +    W L+  A     Q     
Sbjct: 385 AIAEGCMQGMIPYLPE-----LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY 439

Query: 157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT 216
               + + L+ +   +  + E A  A   +  +     +L+  L  +   L         
Sbjct: 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEA--CTELVPYLAYILDTLVFAFSKYQH 497

Query: 217 TFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHTT--DVETLSDICWALSYISD 273
             L  +  AI  L  +     +  + I++ +P L Q  +    + + L  +   LS ++ 
Sbjct: 498 KNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557

Query: 274 GHNDKIQAVVDTGVVPRLVELLDS 297
                     +  V  R V L+  
Sbjct: 558 ALQSGFLPYCEP-VYQRCVNLVQK 580

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 44.5 bits (104), Expect = 6e-05
 Identities = 35/222 (15%), Positives = 75/222 (33%), Gaps = 11/222 (4%)

Query: 22  DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 81
           DE+  +  E    +     D  +      +Q    E  +    +      ++  VP + +
Sbjct: 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA----LQYLVPILTQ 328

Query: 82  GMKSSNPK---MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEAT 138
            +   +           ++A   L        D+++   V+P   E + + +   +  A 
Sbjct: 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAV 387

Query: 139 WALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 198
            A   I  G     +  +   A+P  ++L+  P + + + A W +G I      A    +
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447

Query: 199 GL-GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 239
            L   +  ++  +          N+ WA S+L      A D 
Sbjct: 448 YLAPLLQCLIEGLSAEPRVA--SNVCWAFSSLAEAAYEAADV 487

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 8/169 (4%)

Query: 22  DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 81
           DE+  +  E    +     D  +      +Q    E  +    +      ++  VP + +
Sbjct: 273 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA----LQYLVPILTQ 328

Query: 82  GMKSSNPKMRMI---ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEAT 138
            +   +           ++A   L        D+++   V+P   E + + +   +  A 
Sbjct: 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAV 387

Query: 139 WALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
            A   I  G     +  +   A+P  ++L+  P + + + A W +G I 
Sbjct: 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 50/343 (14%), Positives = 108/343 (31%), Gaps = 65/343 (18%)

Query: 73  KMTVPEMIE--------GMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
            + V ++ E         +K  +P +R  A     K+           + + G +    +
Sbjct: 112 CIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLH---DINA-QMVEDQGFLDSLRD 167

Query: 125 LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG 184
           L+ D NP     A  AL+ I+       +  +N   I K L  L+           W   
Sbjct: 168 LIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-------TEWGQI 220

Query: 185 NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 244
            I           L        L+   P       ++I   ++    + N A     +K+
Sbjct: 221 FI-----------LDC------LSNYNPKDDRE-AQSICERVTPRLSHANSAVVLSAVKV 262

Query: 245 CLPLLNQLIHTTDVET--LSDICWALSYISDGHNDKIQAVV----------DTGVVPRLV 292
            +  L  L   +D     L  +   L  +  G  + +Q V              ++ + +
Sbjct: 263 LMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPE-VQYVALRNINLIVQKRPEILKQEI 321

Query: 293 E---LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
           +   +  ++   +    L  +  +A  +      V     L ++K+  +   V+ V++A 
Sbjct: 322 KVFFVKYNDPIYVKLEKLDIMIRLA--SQANIAQV-----LAELKEYATEVDVDFVRKAV 374

Query: 350 WTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ 392
             I        +  +  +     + +  L++        EA+ 
Sbjct: 375 RAIGRCAIKVEQSAERCV-----STLLDLIQTKVNYVVQEAIV 412

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	440
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.98
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.98
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.96
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.96
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.96
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.71
3grl_A	651	General vesicular transport factor P115; vesicle t	99.68
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.65
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.64
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.61
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.6
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.58
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.57
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.57
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.55
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.53
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.53
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.51
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.48
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.45
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.38
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.38
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.37
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.36
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.36
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.32
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.31
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.15
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.09
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.05
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.03
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.03
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.01
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.96
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.91
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.86
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.77
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.73
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.71
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.65
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.65
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.63
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.59
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.58
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.56
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.49
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.27
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.03
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.92
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.71
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.69
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.63
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.47
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.44
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.39
2x1g_F	971	Cadmus; transport protein, developmental protein,	97.38
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.3
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.29
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.26
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.23
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.21
2x19_B	963	Importin-13; nuclear transport, protein transport;	97.2
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.14
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.13
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.09
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.05
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.92
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	96.81
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.76
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	96.75
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.69
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.54
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	96.45
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.28
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.03
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	96.01
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.84
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.82
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.77
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.77
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.58
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.57
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.54
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.43
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.37
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.34
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	95.22
2p8q_B	40	Snurportin-1; heat repeat, IBB-domain, importin, k	94.66
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.1
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.03
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	93.95
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.75
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	93.67
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.22
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.78
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	91.46
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	91.27
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	88.67
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	88.5
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	87.1
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	86.75
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	84.69
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	81.75

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.3e-71  Score=563.16  Aligned_cols=434  Identities=46%  Similarity=0.781  Sum_probs=333.1

Q ss_pred             cchhhHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccc--cccchhhhccccCCCCCCcccCCHHHHH
Q psy9169           3 QKVAAIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQ--LDEIEEENVTVIEPTCMSPIKMTVPEMI   80 (440)
Q Consensus         3 ~~~~~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~lv   80 (440)
                      .++.|++|+++|||+|+|++|+||||+++.++|||+||+|+|+|||++..  ++..++..+.   ..++......++.++
T Consensus         6 ~~~~~~~r~~~~k~~~~~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~lv   82 (529)
T 3tpo_A            6 NANLPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQEN---RNNQGTVNWSVEDIV   82 (529)
T ss_dssp             --------------------------------------CCSCSCCCCCC------------------CGGGSSCCHHHHH
T ss_pred             CCCCcHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhc---cchhhhHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999854  2222333221   112333457899999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcC
Q psy9169          81 EGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINAN  159 (440)
Q Consensus        81 ~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g  159 (440)
                      +.++|+|++.|+.|+..++++++.+.+++++.+++.|++|.|+++| .++++.+|.+|+|+|+||+.++++++..+++.|
T Consensus        83 ~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~G  162 (529)
T 3tpo_A           83 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG  162 (529)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999999999998889999999999999999999 677799999999999999999999999999999


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC----cHHHHHHHHHHHHhhhhCCCC
Q psy9169         160 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT----PTTFLRNIVWAISNLCRNKNP  235 (440)
Q Consensus       160 ~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~  235 (440)
                      ++|.|+.+|.+++..++++|+|+|+||+.+++.+|+.+...|++++|+.++...+    ...+++.++|++++++.+..+
T Consensus       163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~  242 (529)
T 3tpo_A          163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  242 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTT
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999999999999998654    246789999999999999878


Q ss_pred             CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         236 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       236 ~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      ........+++|.|+.++.+++++++.++||+|++++.+..+..+.+++.|+++.|+.+|.+++..++.+|+++|+||+.
T Consensus       243 ~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~  322 (529)
T 3tpo_A          243 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  322 (529)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHc
Confidence            88888889999999999999999999999999999999999998999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh---------------------------
Q psy9169         316 GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------------  368 (440)
Q Consensus       316 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~---------------------------  368 (440)
                      +++..+..+++.|+++.|..++.++++.++++|+|+|+||+++++.+++.+++                           
T Consensus       323 ~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~  402 (529)
T 3tpo_A          323 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAIT  402 (529)
T ss_dssp             SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998887776                           


Q ss_pred             ---------------------------------------------------cCcchHHHHHHHHcCcHHHHHHHhcCCcH
Q psy9169         369 ---------------------------------------------------EGELNQMALLVEESGGLEKLEALQHHENE  397 (440)
Q Consensus       369 ---------------------------------------------------~~~~~~~~~~l~~~g~l~~l~~L~~~~~~  397 (440)
                                                                         .+..+.++.+++++||+++|+.|++|+|.
T Consensus       403 nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~  482 (529)
T 3tpo_A          403 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE  482 (529)
T ss_dssp             HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSH
T ss_pred             HHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCH
Confidence                                                               23356778899999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCccccc-----cCCCccccCCCCCCCCCCCCC
Q psy9169         398 TVYQKCYKIISMAFNDSAENSI-----ENGDTIEFNPQPVNTVNGFNF  440 (440)
Q Consensus       398 ~v~~~a~~il~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  440 (440)
                      +||++|..||++||+++++||.     .++++|+|+.++. ++|+|||
T Consensus       483 ~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~f  529 (529)
T 3tpo_A          483 SVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDG-APGTFNF  529 (529)
T ss_dssp             HHHHHHHHHHHHHC----------------------------------
T ss_pred             HHHHHHHHHHHHHCCCccccccccCCCCCCcccccCCCCC-CCCCCCC
Confidence            9999999999999998777665     4567899998766 6799999

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=7.7e-59  Score=467.16  Aligned_cols=410  Identities=44%  Similarity=0.737  Sum_probs=323.0

Q ss_pred             HHHHHHHHHHHhhhhHHHHhhccccccccchhhhccccCCCCCCcccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Q psy9169          27 KRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKER  106 (440)
Q Consensus        27 ~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~  106 (440)
                      .|....+++|+++++.+..++++...++.......   ..+++...+..++.+|+.++|+|++.|+.|+..+|+++|.+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~   89 (510)
T 3ul1_B           13 PRGSGMLETAAALFERNHMDSPDLGTDDDDLAMAD---IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREK   89 (510)
T ss_dssp             -------------------------------------------CCSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSS
T ss_pred             cCCcccHHHHHHHHHhhccCCccccCCccccchhh---hccccchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCC
Confidence            35667788999998887777776654322211111   012244567889999999999999999999999999999999


Q ss_pred             CCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy9169         107 HPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN  185 (440)
Q Consensus       107 ~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~n  185 (440)
                      +|+++.+++.|++|.|+++| .++++.+|.+|+|+|+||++++++++..+++.|++|.|+.+|.+++.+++++|+|+|+|
T Consensus        90 ~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~n  169 (510)
T 3ul1_B           90 QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGN  169 (510)
T ss_dssp             CCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999 56779999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCchhHHHHHhcCChHHHHhhhCCCC----cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHH
Q psy9169         186 IAGDGARARDLLLGLGTMPQILALVQPNT----PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL  261 (440)
Q Consensus       186 l~~~~~~~r~~i~~~g~i~~L~~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~  261 (440)
                      |+.+++.+|+.+...|++++|+.++...+    ...+++.++|++++++++..+........+++|.|+.++.+.+++++
T Consensus       170 La~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~  249 (510)
T 3ul1_B          170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL  249 (510)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999998654    24678999999999999987888888889999999999999999999


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCC
Q psy9169         262 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR  341 (440)
Q Consensus       262 ~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~  341 (440)
                      ..++|+|++|+....+..+.+.+.|+++.|+.+|.+++..++.+|+++|+|++.+++..+..+++.|+++.|..++.+++
T Consensus       250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~  329 (510)
T 3ul1_B          250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK  329 (510)
T ss_dssp             HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS
T ss_pred             HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC
Confidence            99999999999999999899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhcCChHHHHHHhh-----------------------------------------------------
Q psy9169         342 VNIVKEAAWTISNITAGNSRQIDHVIQ-----------------------------------------------------  368 (440)
Q Consensus       342 ~~i~~~a~~~L~nl~~~~~~~~~~~i~-----------------------------------------------------  368 (440)
                      +.++++|+|+|+||++++.++++.+++                                                     
T Consensus       330 ~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~L  409 (510)
T 3ul1_B          330 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL  409 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999999988887776                                                     


Q ss_pred             -------------------------cCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCccccc----
Q psy9169         369 -------------------------EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSI----  419 (440)
Q Consensus       369 -------------------------~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~~~----  419 (440)
                                               .+..+.++.+++++||+++|+.|+.|+|++||++|.+||++||++++|||.    
T Consensus       410 L~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~  489 (510)
T 3ul1_B          410 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP  489 (510)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-----------
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCC
Confidence                                     234567888999999999999999999999999999999999998877665    


Q ss_pred             -cCCCccccCCCCCCCCCCCCC
Q psy9169         420 -ENGDTIEFNPQPVNTVNGFNF  440 (440)
Q Consensus       420 -~~~~~~~~~~~~~~~~~~~~~  440 (440)
                       .++++|+|+.++. ++++|||
T Consensus       490 ~~~~~~~~~~~~~~-~~~~~~~  510 (510)
T 3ul1_B          490 ETTSEGFAFQVQDG-APGTFNF  510 (510)
T ss_dssp             ----------------------
T ss_pred             CCCccccccCCCCC-CCCCCCC
Confidence             4557899998776 7789999

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=4.4e-56  Score=450.26  Aligned_cols=408  Identities=45%  Similarity=0.754  Sum_probs=322.8

Q ss_pred             hHHHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccchhhhccccCCCCCCcccCCHHHHHHHhcCC
Q psy9169           7 AIDRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEGMKSS   86 (440)
Q Consensus         7 ~~~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv~~L~s~   86 (440)
                      ++.|+++||+ ++|.+|+||||+++.++|||+||+|++.|||++.......++....  +. .......++.|++.|.++
T Consensus        11 ~~~~~~~~k~-~~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~--~~-~~~~~~~l~~lv~~L~s~   86 (528)
T 4b8j_A           11 VEVRRNRYKV-AVDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAA--TG-VDKKLESLPAMIGGVYSD   86 (528)
T ss_dssp             -----------------CCCCC-----------------CCCC-------------------------CHHHHHHHHTSS
T ss_pred             hHHHHHhhcc-cCChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccc--cc-hhhhHHHHHHHHHHHcCC
Confidence            4789999998 5899999999999999999999999999999985321111000000  00 112346799999999999


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCC-hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHH
Q psy9169          87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANAIPKFL  165 (440)
Q Consensus        87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~-~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~  165 (440)
                      ++..+..|++.|+++++...++++..+++.|++|.|+.+|.+++ +.++..|+|+|++++.++++.+..+++.|+++.|+
T Consensus        87 ~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~  166 (528)
T 4b8j_A           87 DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV  166 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHH
Confidence            99999999999999998776678899999999999999997665 99999999999999999899999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhH
Q psy9169         166 QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC  245 (440)
Q Consensus       166 ~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  245 (440)
                      .+|.++++.+++.|+|+|+||+.+++..+..+...|+++.|+.++..+.+..+++.++|+|++|+.+. +........++
T Consensus       167 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~  245 (528)
T 4b8j_A          167 KLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPA  245 (528)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHH
Confidence            99999999999999999999999989999999999999999999976666999999999999999987 66677778999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHH
Q psy9169         246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI  325 (440)
Q Consensus       246 ~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~  325 (440)
                      +|.|+.++.+.++.++..++|+|++++.+.++..+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+.++
T Consensus       246 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~  325 (528)
T 4b8j_A          246 LPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII  325 (528)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcCChHHHHHHhh------------------------------------
Q psy9169         326 QAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------------------  368 (440)
Q Consensus       326 ~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~~~~~~~~~i~------------------------------------  368 (440)
                      +.|+++.|+.+|.++ ++.++++|+|+|+||+.+++++++.+++                                    
T Consensus       326 ~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~  405 (528)
T 4b8j_A          326 DHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD  405 (528)
T ss_dssp             TTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH
Confidence            999999999999998 8999999999999999988888777665                                    


Q ss_pred             --------------------------------------cC---------cchHHHHHHHHcCcHHHHHHHhcCCcHHHHH
Q psy9169         369 --------------------------------------EG---------ELNQMALLVEESGGLEKLEALQHHENETVYQ  401 (440)
Q Consensus       369 --------------------------------------~~---------~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~  401 (440)
                                                            .+         ..+.++..++++||+++|+.|++|++++|++
T Consensus       406 ~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~  485 (528)
T 4b8j_A          406 QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYE  485 (528)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHH
Confidence                                                  00         1224788999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCccccc
Q psy9169         402 KCYKIISMAFNDSAENSI  419 (440)
Q Consensus       402 ~a~~il~~~~~~~~~~~~  419 (440)
                      +|..++++||..+++++.
T Consensus       486 ~a~~il~~~~~~e~~~~~  503 (528)
T 4b8j_A          486 KAVKILEAYWMDEEDDTM  503 (528)
T ss_dssp             HHHHHHHHHCC-------
T ss_pred             HHHHHHHHHCCCcccccc
Confidence            999999999998777654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=6.3e-54  Score=434.58  Aligned_cols=413  Identities=47%  Similarity=0.738  Sum_probs=348.8

Q ss_pred             CCcchhhHHHHHhhccCC-CChHHHHHHHHHHHHHHHHhhhhHHHHhhcccccc----ccchhhh----ccccCCCCCCc
Q psy9169           1 MSQKVAAIDRKASFKNAG-KSFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQL----DEIEEEN----VTVIEPTCMSP   71 (440)
Q Consensus         1 ~~~~~~~~~r~~~~k~~~-~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~----~~~~~~~----~~~~~~~~~~~   71 (440)
                      |++...++.|++.||++| +|++|+||||++++++|||+||++++.|||++...    +..++.+    ...   .....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   84 (530)
T 1wa5_B            8 STSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQ---QFYSQ   84 (530)
T ss_dssp             ----CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC-----------------------------
T ss_pred             CCCCCchHHHHHHHhccCCCChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhh---hhhhh
Confidence            566778899999999999 99999999999999999999999999999998531    1111111    000   00102


Q ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCC-ChHHHHHHHHHHHHHhCCCcH
Q psy9169          72 IKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE-NPNTQFEATWALTNIASGTSE  150 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~-~~~i~~~a~~~L~nla~~~~~  150 (440)
                      ....++.++..|+++++..+..|++.|+++++...++++..+++.|++|.|+.+|.++ ++.++..|+|+|++++.++++
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            4467999999999999999999999999998876557788999999999999999775 899999999999999999889


Q ss_pred             HHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         151 QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      .+..+++.|+++.|+.+|.++++.+++.|+|+|++|+.+++..++.+...|+++.|+.++.+.+ ..++..++|+|++|+
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~  243 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLC  243 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC-HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998899999999999999999998854 899999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV  310 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L  310 (440)
                      .+.++........+++|.|+.++.+.++.++..++|+|++|+...++..+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus       244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L  323 (530)
T 1wa5_B          244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  323 (530)
T ss_dssp             CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence            88756667777899999999999999999999999999999998888888899999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh----------------------
Q psy9169         311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ----------------------  368 (440)
Q Consensus       311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~----------------------  368 (440)
                      +|++.+++...+.+++.|+++.|+.+|.++++.+++.|+|+|+|++.+++++++.+++                      
T Consensus       324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  403 (530)
T 1wa5_B          324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  403 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988877776654                      


Q ss_pred             ---------cC------------------------------------------------------cchHHHHHHHHcCcH
Q psy9169         369 ---------EG------------------------------------------------------ELNQMALLVEESGGL  385 (440)
Q Consensus       369 ---------~~------------------------------------------------------~~~~~~~~l~~~g~l  385 (440)
                               .+                                                      ..+.++..+.++||+
T Consensus       404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~  483 (530)
T 1wa5_B          404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM  483 (530)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence                     00                                                      013466779999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhhCCCCccc
Q psy9169         386 EKLEALQHHENETVYQKCYKIISMAFNDSAEN  417 (440)
Q Consensus       386 ~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~~  417 (440)
                      ++|+.|+.|++++|+++|..+|++||.++++|
T Consensus       484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          484 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            99999999999999999999999999987665

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=4.5e-39  Score=318.76  Aligned_cols=344  Identities=50%  Similarity=0.800  Sum_probs=307.6

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh-CCHHHHHHhccCC-ChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLDDE-NPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~-g~i~~Lv~lL~~~-~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .++.+++.|+++++.++..|+..|+++++...+++...+++. |++|.|+++|.++ ++.++..|+++|++++.++++.+
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            489999999999999999999999999875555667888888 9999999999766 89999999999999999888888


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      ..+++.|++|.|+.+|.++++.+++.|+|+|++++.+++..++.+...|+++.|+.++.++.+..+++.++|+|.+++.+
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88999999999999999999999999999999999998889999999999999999999755689999999999999987


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                      ..+........+++|.|+.++.+.++.++..++|+|.+++...++....+.+.|+++.|+.+|.++++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            64444444458999999999999999999999999999999888788888999999999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh------------------------
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------  368 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~------------------------  368 (440)
                      ++.+.+...+.+++.|+++.|+.++.++++.+++.|+|+|+|++.+++++++.+++                        
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  340 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW  340 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            99999988888999999999999999999999999999999999988877766654                        


Q ss_pred             --------------------------------------------------cC---------cchHHHHHHHHcCcHHHHH
Q psy9169         369 --------------------------------------------------EG---------ELNQMALLVEESGGLEKLE  389 (440)
Q Consensus       369 --------------------------------------------------~~---------~~~~~~~~l~~~g~l~~l~  389 (440)
                                                                        .+         ..+.|+..+.+.||+++|.
T Consensus       341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~  420 (450)
T 2jdq_A          341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIE  420 (450)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHH
Confidence                                                              00         0135678899999999999


Q ss_pred             HHhcCCcHHHHHHHHHHHHhhCCCCcccc
Q psy9169         390 ALQHHENETVYQKCYKIISMAFNDSAENS  418 (440)
Q Consensus       390 ~L~~~~~~~v~~~a~~il~~~~~~~~~~~  418 (440)
                      .|++|++.+|+++|..+|++||.+++|++
T Consensus       421 ~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  449 (450)
T 2jdq_A          421 FLQSHENQEIYQKAFDLIEHYFGTEDEDS  449 (450)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence            99999999999999999999998877654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.9e-38  Score=310.64  Aligned_cols=323  Identities=17%  Similarity=0.217  Sum_probs=270.6

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..+|.++..|.++++++|..|++.|++++..++ +....+++.|++|.|+.+|.++++.++..|+|+|.||+.++++++.
T Consensus         2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            468999999999999999999999999864332 3355899999999999999999999999999999999998899999


Q ss_pred             HHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC--------CC-------CcHH
Q psy9169         154 TVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--------PN-------TPTT  217 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~--------~~-------~~~~  217 (440)
                      .+++.|++|.|+.+|. ++++++++.++|+|+||+.+ +..|..+.. |++|.|+.++.        ++       .+..
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88899999999999999998 778888888 99999999993        22       2467


Q ss_pred             HHHHHHHHHHhhhhCCCCCCCHHHHh-hHHHHHHHhhcC-----------------------------------------
Q psy9169         218 FLRNIVWAISNLCRNKNPAPDFEKIK-ICLPLLNQLIHT-----------------------------------------  255 (440)
Q Consensus       218 ~~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~ll~~-----------------------------------------  255 (440)
                      ++++++|+|+|||.++ ......... +++|.|+.++.+                                         
T Consensus       159 v~~~a~~aL~nLs~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSAD-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTSH-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccCH-HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            8889999999999762 222222222 666666655532                                         


Q ss_pred             ----------------------------------------------------------CCHHHHHHHHHHHHHhccCChh
Q psy9169         256 ----------------------------------------------------------TDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       256 ----------------------------------------------------------~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                                                                                .++.++..++|+|++|+.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                                                      2356777789999999987643


Q ss_pred             h---H-HHHH-hcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCCh------hHHH
Q psy9169         278 K---I-QAVV-DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRV------NIVK  346 (440)
Q Consensus       278 ~---~-~~l~-~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~------~i~~  346 (440)
                      .   + +.++ +.|++|.|+++|.+++..++..|+++|+|++.+.  ....++..|+++.|+++|.++++      .+..
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            2   2 3344 6899999999999999999999999999998753  34456677899999999998643      5888


Q ss_pred             HHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhCCCCc
Q psy9169         347 EAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~  415 (440)
                      .++++|.|+..+++++             +..+.++||+++|..|+.|+ ++++|++|..+|.+||.+.+
T Consensus       396 ~~l~~l~ni~~~~~~~-------------~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          396 SACYTVRNLMASQPQL-------------AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHTTCTHH-------------HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHhcCHHH-------------HHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            9999999999877654             67778899999999999999 99999999999999998665

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=9.3e-37  Score=313.84  Aligned_cols=322  Identities=14%  Similarity=0.129  Sum_probs=276.0

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH-HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc---
Q psy9169          76 VPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTS---  149 (440)
Q Consensus        76 i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii-~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~---  149 (440)
                      ++.++++|.++  |++++..|++.|..+ +... .....++ +.|++|.|+++|+++++.+++.|+|+|+||+.+++   
T Consensus       379 v~~l~~lL~~~~~d~~v~~~AveaLayL-S~~~-~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~  456 (810)
T 3now_A          379 AEACRRFLIKPGKDKDIRRWAADGLAYL-TLDA-ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE  456 (810)
T ss_dssp             HHHHHHHHHCSSCCSSHHHHHHHHHHHH-TTSH-HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHH-hCCc-HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence            66788888887  899999999999977 4443 3344555 57999999999988899999999999999998652   


Q ss_pred             --------------------------HHH---HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q psy9169         150 --------------------------EQT---MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL  200 (440)
Q Consensus       150 --------------------------~~~---~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~  200 (440)
                                                ..+   +.+++.|++|.|+.+|.++++.++++|+|+|+||+.+ +.+|..+++.
T Consensus       457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~  535 (810)
T 3now_A          457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQE  535 (810)
T ss_dssp             CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHT
T ss_pred             hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHC
Confidence                                      122   6889999999999999999999999999999999986 6699999999


Q ss_pred             CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH--HHHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHhccCChh
Q psy9169         201 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF--EKIKICLPLLNQLIHTT-DVETLSDICWALSYISDGHND  277 (440)
Q Consensus       201 g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~~L~~ll~~~-d~~i~~~a~~~L~~l~~~~~~  277 (440)
                      |++|+|+.++.+++ ...++.|+|+|.+|+.+.++...+  ....+++|.|+.+|.++ +......|+|+|.||+..+++
T Consensus       536 Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~  614 (810)
T 3now_A          536 GGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES  614 (810)
T ss_dssp             THHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             CCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence            99999999998877 788999999999999876432211  12356899999999865 344557899999999999888


Q ss_pred             hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH-cCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         278 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       278 ~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      ..+.+++.|+++.|+.+|.++++.++.+|+++|+||+.+++...+ +++ .|.++.|+.++.+++..++++|+|+|+||+
T Consensus       615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~-~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt  693 (810)
T 3now_A          615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM-FEGNNDRVKFLALLCEDEDEETATACAGALAIIT  693 (810)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH-HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH-HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            889999999999999999999999999999999999998775555 444 799999999999999999999999999999


Q ss_pred             cCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169         357 AGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       357 ~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~  414 (440)
                      ++++.+++.+++            ..|+++.|..|+.+++.++++.|.++|.++....
T Consensus       694 ~~s~~~~~~ii~------------~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s  739 (810)
T 3now_A          694 SVSVKCCEKILA------------IASWLDILHTLIANPSPAVQHRGIVIILNMINAG  739 (810)
T ss_dssp             HHCHHHHHHHHT------------STTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHH------------HcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence            988776544432            3799999999999999999999999999987643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=7.3e-36  Score=307.22  Aligned_cols=325  Identities=14%  Similarity=0.088  Sum_probs=278.6

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC----------------------------c---HHHHHHhCCHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHP----------------------------P---IDELIEAGVVPI  121 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~----------------------------~---~~~ii~~g~i~~  121 (440)
                      ...+|.|+++|.++++.+++.|+++|.|+.......                            .   ++.+++.|++|.
T Consensus       420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~  499 (810)
T 3now_A          420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTA  499 (810)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHH
Confidence            357899999999999999999999999998643211                            0   268889999999


Q ss_pred             HHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHH-HHHh
Q psy9169         122 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARD-LLLG  199 (440)
Q Consensus       122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~-~i~~  199 (440)
                      |+.+|.++++.+|.+|+|+|+||+. +++++..+++.|++|.|+.+|.++++..++.|+|+|+|++.+. +...- ....
T Consensus       500 LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          500 LCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            9999999999999999999999995 5789999999999999999999999999999999999999542 32100 0012


Q ss_pred             cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhH
Q psy9169         200 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI  279 (440)
Q Consensus       200 ~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~  279 (440)
                      .|++++|+.+|.++.+...+..++|+|.||+.+.+.........+++|.|+.++.+.++.++..|+++|+||+.+++.. 
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-  657 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-  657 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-
Confidence            4699999999986654555678999999999886333444555789999999999999999999999999999877655 


Q ss_pred             HHHHh-cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHH-cCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         280 QAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       280 ~~l~~-~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ..+++ .|+++.|+.++.+++..++..|+++|+||+.+++.+.+.+++ .|+++.|+.++.+++..+++.|+|+|+|++.
T Consensus       658 ~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          658 KMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            44454 799999999999999999999999999999988889999999 8999999999999999999999999999998


Q ss_pred             CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC---cHHHHHHHHHHHHhhCC
Q psy9169         358 GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE---NETVYQKCYKIISMAFN  412 (440)
Q Consensus       358 ~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~---~~~v~~~a~~il~~~~~  412 (440)
                      +++++             ...+.+.|+++.|..|+..+   +.++++.|.++|+....
T Consensus       738 ~s~e~-------------~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          738 AGEEI-------------AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             TCHHH-------------HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             CCHHH-------------HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            77654             67778899999999997544   79999999999988854

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=288.38  Aligned_cols=327  Identities=16%  Similarity=0.193  Sum_probs=273.8

Q ss_pred             cCCHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCH----------HHHHHhccCCC
Q psy9169          73 KMTVPEMIEGMKSS------------NPKMRMIATRSARKMLSKERHPPIDELIEAGVV----------PICVELLDDEN  130 (440)
Q Consensus        73 ~~~i~~lv~~L~s~------------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i----------~~Lv~lL~~~~  130 (440)
                      ...+|.|+++|+..            +++++.+|+|+|.++++..+ .......+.|++          +.+++++.+..
T Consensus        69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  147 (458)
T 3nmz_A           69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQP-DDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE  147 (458)
T ss_dssp             HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCc-chhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence            47899999999963            37999999999999998876 456777777888          77788884331


Q ss_pred             --hH-----HHH-------HHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-----------CCHHHHHHHHHHHHH
Q psy9169         131 --PN-----TQF-------EATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGN  185 (440)
Q Consensus       131 --~~-----i~~-------~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~n  185 (440)
                        .+     ++.       +|+|+|+|++.+ +++|..+++.|+++.|+.+|..           .++.+++.|+|+|.|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n  226 (458)
T 3nmz_A          148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN  226 (458)
T ss_dssp             SSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence              22     433       999999999765 8999999999999999999942           237799999999999


Q ss_pred             hhCCCchhHHHHHh-cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCCCHHHHhhHHHHHHHhh-cCCCHHHHH
Q psy9169         186 IAGDGARARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLI-HTTDVETLS  262 (440)
Q Consensus       186 l~~~~~~~r~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll-~~~d~~i~~  262 (440)
                      |+.+++..+..+.. .|+||.|+.+|.+++ .+++..++|+|.||+.+.+ .........+++|.|+.+| .+.++.++.
T Consensus       227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~  305 (458)
T 3nmz_A          227 LTFGDVANKATLCSMKGCMRALVAQLKSES-EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK  305 (458)
T ss_dssp             HHTTCHHHHHHHHHCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred             HhCCCcccHHHHHHcCCcHHHHHHHHhCCC-HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence            99887777766654 566999999999766 8999999999999997532 2234445579999999975 567889999


Q ss_pred             HHHHHHHHhccCChhhHHHHH-hcCChHHHHHhccCCCh----hHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHH
Q psy9169         263 DICWALSYISDGHNDKIQAVV-DTGVVPRLVELLDSEET----TILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMK  334 (440)
Q Consensus       263 ~a~~~L~~l~~~~~~~~~~l~-~~g~~~~Lv~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~  334 (440)
                      .++.+|++|+...++....+. ..|+++.|+.+|.+.+.    .++..|+++|.||+.   +++++++.+++.|+++.|+
T Consensus       306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv  385 (458)
T 3nmz_A          306 SVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL  385 (458)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHH
Confidence            999999999984444444555 78999999999987654    489999999999997   7888999999999999999


Q ss_pred             HHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCC
Q psy9169         335 KLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       335 ~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~  414 (440)
                      .+|.+++..++++|+|+|+|++.+++++             ...+.+.|+++.|..|+.++++++++.|..+|..+....
T Consensus       386 ~LL~~~~~~v~~~A~~aL~nLa~~~~~~-------------~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          386 QHLKSHSLTIVSNACGTLWNLSARNPKD-------------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHSSCSCHHHHHHHHHHHHHHHSSCHHH-------------HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHcCCChHHHHHHHHHHHHHHcCCHHH-------------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999888766             556678899999999999999999999999999998755


Q ss_pred             c
Q psy9169         415 A  415 (440)
Q Consensus       415 ~  415 (440)
                      +
T Consensus       453 p  453 (458)
T 3nmz_A          453 P  453 (458)
T ss_dssp             S
T ss_pred             H
Confidence            3

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.8e-35  Score=287.43  Aligned_cols=320  Identities=15%  Similarity=0.184  Sum_probs=253.1

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHhCCHHHHHHhccCC------------ChHHHHHHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPI-DELIEAGVVPICVELLDDE------------NPNTQFEATWA  140 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~-~~ii~~g~i~~Lv~lL~~~------------~~~i~~~a~~~  140 (440)
                      ..++.|+..+.+.|+..      .++++++...+++. ..++++|++|.|+++|+..            +++++++|+|+
T Consensus        32 ~~~~~l~~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~a  105 (458)
T 3nmz_A           32 EMVYSLLSMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA  105 (458)
T ss_dssp             -------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHH
Confidence            45788889998888773      33334443334454 8899999999999999542            37999999999


Q ss_pred             HHHHhCCCcHHHHHHHhcCCH----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchhHHH
Q psy9169         141 LTNIASGTSEQTMTVINANAI----------PKFLQLLSSPH--LN-----LAE-------QATWALGNIAGDGARARDL  196 (440)
Q Consensus       141 L~nla~~~~~~~~~i~~~g~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~nl~~~~~~~r~~  196 (440)
                      |+||+.++++.+....+.|++          +.+++++.++.  .+     +++       +|+|+|+|++.+ +.+|+.
T Consensus       106 l~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~  184 (458)
T 3nmz_A          106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA  184 (458)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH
T ss_pred             HHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH
Confidence            999999999999998888888          77788887652  22     555       999999999877 899999


Q ss_pred             HHhcCChHHHHhhhCC----------CCcHHHHHHHHHHHHhhhhCCCCCCCHHH-HhhHHHHHHHhhcCCCHHHHHHHH
Q psy9169         197 LLGLGTMPQILALVQP----------NTPTTFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHTTDVETLSDIC  265 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~~d~~i~~~a~  265 (440)
                      +.+.|++++|+.+|..          ..+..+++.++|+|.|||.+++....... ..+++|.|+.+|.+++++++..++
T Consensus       185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~  264 (458)
T 3nmz_A          185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIA  264 (458)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHH
Confidence            9999999999999942          23467899999999999988643322332 357799999999999999999999


Q ss_pred             HHHHHhccC-ChhhHHHHHhcCChHHHHHhc-cCCChhHHHHHHHHHHHhhcCChHHHHHHH-HcCCHHHHHHHhcCCCh
Q psy9169         266 WALSYISDG-HNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVI-QAGGLQKMKKLLSSSRV  342 (440)
Q Consensus       266 ~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~l~-~~g~l~~L~~ll~~~~~  342 (440)
                      |+|.+|+.. +++....+++.|+++.|+++| .+.+..++..|+.+|+||+.+.++....+. ..|+++.|+.+|.++++
T Consensus       265 ~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~  344 (458)
T 3nmz_A          265 SVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQ  344 (458)
T ss_dssp             HHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence            999999985 566778899999999999975 667889999999999999996655555565 79999999999998754


Q ss_pred             ----hHHHHHHHHHHHHhc---CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         343 ----NIVKEAAWTISNITA---GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       343 ----~i~~~a~~~L~nl~~---~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                          .+++.|+|+|+||+.   +++++             ...+.+.|+++.|..++.+++.++++.|..+|..+...
T Consensus       345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~-------------~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~  409 (458)
T 3nmz_A          345 TNTLAIIESGGGILRNVSSLIATNEDH-------------RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR  409 (458)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHTTCHHH-------------HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS
T ss_pred             cchHHHHHHHHHHHHHHHhcccCCHHH-------------HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence                489999999999996   67655             56677899999999999999999999999999998743

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=1.6e-34  Score=290.23  Aligned_cols=283  Identities=26%  Similarity=0.397  Sum_probs=255.7

Q ss_pred             CCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..+|.|+++|. ++++.+|..|+|+|.++++.+. .....+++.|++|.|+.+|.+++++++..|+|+|+||+.++++.+
T Consensus       100 G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~-e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r  178 (510)
T 3ul1_B          100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  178 (510)
T ss_dssp             THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            56899999997 5568999999999999987654 557889999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169         153 MTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS  227 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~  227 (440)
                      ..+++.|+++.|+.+|.+++     ..+...++|+|+|++.+...........+++|.|+.++.+.+ .+++..++|+|+
T Consensus       179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~  257 (510)
T 3ul1_B          179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAIS  257 (510)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence            99999999999999998765     457889999999999876555555566789999999998877 899999999999


Q ss_pred             hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169         228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL  307 (440)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al  307 (440)
                      +|+.+.+.........+++|.|+.++.+.+..++..++++|++++.+++.....+++.|+++.|+.+|.+++..++..|+
T Consensus       258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~  337 (510)
T 3ul1_B          258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  337 (510)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred             HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence            99987644334445578999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       308 ~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      |+|+||+.+++.+.+.+++.|+++.|+.++.+++..++++|+|+|+|++.+
T Consensus       338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999863

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3e-34  Score=289.81  Aligned_cols=284  Identities=25%  Similarity=0.391  Sum_probs=257.2

Q ss_pred             cCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          73 KMTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ...+|.|+++|. ++++.+|..|+++|.++++... .....+++.|++|.|+.+|.++++.++..|+|+|+||+.++++.
T Consensus       118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~-~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence            467899999997 5669999999999999987654 45678999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169         152 TMTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI  226 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L  226 (440)
                      +..+++.|+++.|+.+|..++     ..+...++|+|++++.+...........+++|.|+.++.+.+ .+++..++|+|
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL  275 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAI  275 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHH
Confidence            999999999999999998754     457889999999999876555555666789999999998877 89999999999


Q ss_pred             HhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHH
Q psy9169         227 SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA  306 (440)
Q Consensus       227 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~a  306 (440)
                      ++++.+.+.........+++|.|+.++.+.+..++..++++|++++.+++.....+++.|+++.|+.+|.++++.++..|
T Consensus       276 ~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a  355 (529)
T 3tpo_A          276 SYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  355 (529)
T ss_dssp             HHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             HHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence            99998764444445557899999999999999999999999999999999998999999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         307 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       307 l~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +|+|+||+.+++.+...+++.|+++.|+.++.+++..++++|+|+|+|++.+
T Consensus       356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999863

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=8.2e-34  Score=282.99  Aligned_cols=339  Identities=17%  Similarity=0.222  Sum_probs=270.9

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCC-CcHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG-TSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~-~~~~  151 (440)
                      ...++.||++|.++++.+|..|++.|++++.... +.+..+++.|+||.|+.+|.++++.+|..|+|+|.||+.+ ++++
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            4689999999999999999999999998875443 5678899999999999999999999999999999999986 6899


Q ss_pred             HHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC-----------------CC
Q psy9169         152 TMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-----------------PN  213 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~-----------------~~  213 (440)
                      +..+++.|+||.|+.+|.+ .+.+++++++++|+||+.. +..+..+.. ++++.|++++.                 +.
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997 5789999999999999985 677777775 57999999871                 12


Q ss_pred             CcHHHHHHHHHHHHhhhhCCCCCCCHHH----------------------------------------------------
Q psy9169         214 TPTTFLRNIVWAISNLCRNKNPAPDFEK----------------------------------------------------  241 (440)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~----------------------------------------------------  241 (440)
                      .+..++++++|+|.||+...........                                                    
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            2357777788888777754311000000                                                    


Q ss_pred             ----------------------HhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChh---hHH-HHHhcCChHHHHHh
Q psy9169         242 ----------------------IKICLPLLNQLIH-TTDVETLSDICWALSYISDGHND---KIQ-AVVDTGVVPRLVEL  294 (440)
Q Consensus       242 ----------------------~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~---~~~-~l~~~g~~~~Lv~l  294 (440)
                                            ..++++.++.+|. +.++.++..|+|+|.+|+.+...   ..+ .+.+.+++|.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                                  0123455566664 45788889999999999876521   222 44456889999999


Q ss_pred             ccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--------ChhHHHHHHHHHHHHhcCChHHHHHH
Q psy9169         295 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--------RVNIVKEAAWTISNITAGNSRQIDHV  366 (440)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--------~~~i~~~a~~~L~nl~~~~~~~~~~~  366 (440)
                      |.+++..++..|+++|+||+.+... . .++..|+++.|+.+|.++        ...+...|||+|+||+++++++    
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~~-~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~----  437 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDARN-K-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA----  437 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCSC-H-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH----
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChhH-H-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH----
Confidence            9999999999999999999987653 3 355889999999999876        3568899999999999998776    


Q ss_pred             hhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhCCCCccccc---cCCCccccCC
Q psy9169         367 IQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCYKIISMAFNDSAENSI---ENGDTIEFNP  429 (440)
Q Consensus       367 i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~~a~~il~~~~~~~~~~~~---~~~~~~~~~~  429 (440)
                               ...+.+.|++++|..|+.++  .+.+.+.|..+|..+|.+.+--..   +++..-.|..
T Consensus       438 ---------~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~~~f~~  496 (584)
T 3l6x_A          438 ---------AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQV  496 (584)
T ss_dssp             ---------HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCGGGGCC
T ss_pred             ---------HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHHHhcc
Confidence                     56677899999999999886  899999999999999986653332   3444445543

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=3.3e-34  Score=272.01  Aligned_cols=274  Identities=18%  Similarity=0.187  Sum_probs=236.7

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC-----------CChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          87 NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-----------ENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        87 ~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~-----------~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      +...+..|+++|.++. .+. ..++.+++.|+++.|+.+|..           .++.+|..|+|+|.||+.+++..+..+
T Consensus        45 ~~~~~~~A~~aL~nls-~d~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           45 VEHQICPAVCVLMKLS-FDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGTHHHHHHHHHHHH-TSH-HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHc-CCH-HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3455668999999985 443 568899999999999999932           246899999999999999887777777


Q ss_pred             Hh-cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         156 IN-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       156 ~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      .. .|+||.|+.+|.++++++++.|+|+|+||+.. ++..|..+.+.|+++.|+++|....+.++++.++++|.||+...
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            54 56699999999999999999999999999974 67788999999999999998654444889999999999999843


Q ss_pred             CC-CCCHHHHhhHHHHHHHhhcCCCH----HHHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhccCCChhHHHH
Q psy9169         234 NP-APDFEKIKICLPLLNQLIHTTDV----ETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTA  305 (440)
Q Consensus       234 ~~-~~~~~~~~~~~~~L~~ll~~~d~----~i~~~a~~~L~~l~~---~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~  305 (440)
                      +. ...+....+++|.|+.+|.+.++    +++..++|+|.+|+.   ..++..+.+++.|+++.|+.+|.+++..++..
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            22 22222257999999999987654    599999999999997   67778899999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169         306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ  362 (440)
Q Consensus       306 al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  362 (440)
                      |+++|+|++.+++++++.+++.|+++.|+.++.++++.+++.|+|+|+||+.+.+.+
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999999999999999987664

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.2e-30  Score=263.60  Aligned_cols=280  Identities=16%  Similarity=0.202  Sum_probs=248.6

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.|+++|.++++.++..|+++|.++..... .....+++.|++|.|+.+|.++++.++..++.+|.+++.++++.+.
T Consensus       101 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~  179 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  179 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            578999999999999999999999999987654 4467788899999999999888999999999999999999899999


Q ss_pred             HHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      .+.+.|+++.|+.+|++++ ...+..++.+|.+++.. +..+..+...|+++.|+.++.+.+ ..+++.++|+|.+|+..
T Consensus       180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~  257 (529)
T 1jdh_A          180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDA  257 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCC-hHHHHHHHHHHHHHhcC
Confidence            9999999999999998765 66778899999999975 677889999999999999998875 89999999999999987


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--CChhHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTILTAALRTV  310 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~~~~v~~~al~~L  310 (440)
                      .... .  ...+++|.|+.++.+.+++++..++|+|++|+..+++....+.+.|+++.|+.+|.+  .++.++..|+++|
T Consensus       258 ~~~~-~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L  334 (529)
T 1jdh_A          258 ATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             CTTC-S--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             Chhh-H--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHH
Confidence            6332 2  235899999999999999999999999999999888888999999999999999975  3478999999999


Q ss_pred             HHhhcCChH---HHHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHHHHhcCC
Q psy9169         311 GNIATGNDH---QTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGN  359 (440)
Q Consensus       311 ~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~  359 (440)
                      +|++.+++.   ....+.+.|+++.|+.++.+++ +.+++.++|+|+|++.++
T Consensus       335 ~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~  387 (529)
T 1jdh_A          335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  387 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred             HHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcCh
Confidence            999886543   3567889999999999999886 589999999999999764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=2.4e-31  Score=268.92  Aligned_cols=283  Identities=27%  Similarity=0.421  Sum_probs=255.1

Q ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          73 KMTVPEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ...++.|+++|.+++ +.++..|+++|.++.+... .....+++.|++|.|+.+|.++++.++..|+|+|++|+.+++..
T Consensus       116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence            367999999999887 9999999999999976543 45678889999999999998899999999999999999988888


Q ss_pred             HHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         152 TMTVINANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      +..+.+.|+++.|+.+| .+++..++..++|+|++++...+.. ......|+++.|+.++.+.+ ..++..++|+|.+++
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~  272 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSND-EEVLTDACWALSYLS  272 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHH
Confidence            99999999999999999 5678999999999999999875444 33445899999999998776 899999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-ChhHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRT  309 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~v~~~al~~  309 (440)
                      .+.+.........+++|.|+.+|.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus       273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~  352 (528)
T 4b8j_A          273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT  352 (528)
T ss_dssp             SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence            77533333445578999999999999999999999999999999888889999999999999999998 89999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      |+|++.+++.....+++.|+++.|+.++.++++.++++|+|+|+|++.+
T Consensus       353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            9999999998999999999999999999999999999999999999975

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=3.9e-31  Score=261.68  Aligned_cols=286  Identities=27%  Similarity=0.361  Sum_probs=253.2

Q ss_pred             CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..++.|++.|.++ ++.++..|++++.++.+... .....+++.|++|.|+.+|.++++.++..|+|+|++++..++..+
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~  142 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR  142 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence            4689999999988 89999999999999976543 345677889999999999998999999999999999999988899


Q ss_pred             HHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      ..+++.|+++.|+.++.+ ++..++..|+|+|++++.+. +..+..+ ..++++.|+.++.+.+ ..++..++|+|.+++
T Consensus       143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~  220 (450)
T 2jdq_A          143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSD-TDVLADACWALSYLS  220 (450)
T ss_dssp             HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCC-HHHHHHHHHHHHHHH
Confidence            999999999999999996 67999999999999999765 3332222 3789999999998766 899999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV  310 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L  310 (440)
                      ...++........+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|
T Consensus       221 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L  300 (450)
T 2jdq_A          221 DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI  300 (450)
T ss_dssp             SSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHH
Confidence            87533333444568999999999999999999999999999999888888889999999999999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHH
Q psy9169         311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQ  362 (440)
Q Consensus       311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~  362 (440)
                      +|++.+++...+.+++.|+++.|+.++.++++.+++.|+|+|+|++.+ ++++
T Consensus       301 ~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~  353 (450)
T 2jdq_A          301 SNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ  353 (450)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHH
Confidence            999999998999999999999999999999999999999999999875 4443

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.5e-30  Score=265.45  Aligned_cols=280  Identities=16%  Similarity=0.198  Sum_probs=247.5

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.|+++|+++++.++..|+++|.++++... .....+++.|++|.|+.+|.++++.++..++.+|.+++.++++.+.
T Consensus        98 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~  176 (644)
T 2z6h_A           98 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  176 (644)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcc-hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence            568999999999999999999999999987653 4567788899999999999888899998899999999998899999


Q ss_pred             HHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      .+.+.|+++.|+.+|.+.+ ..+++.++.+|.|++.. +..+..++..|+++.|+.++.+.+ ..+++.++|+|.+|+..
T Consensus       177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~  254 (644)
T 2z6h_A          177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDA  254 (644)
T ss_dssp             HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGG
T ss_pred             HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc
Confidence            9999999999999999866 77889999999999965 778899999999999999998875 89999999999999987


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC--hhHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTAALRTV  310 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~~v~~~al~~L  310 (440)
                      ....   ....+++|.|+.++.+.+++++..++|+|++|+..+++..+.+++.|+++.|+.+|.+.+  +.++..|+++|
T Consensus       255 ~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          255 ATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             CTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            6332   223589999999999999999999999999999988888899999999999999997632  68999999999


Q ss_pred             HHhhcCChH--H-HHHHHHcCCHHHHHHHhcCCC-hhHHHHHHHHHHHHhcCC
Q psy9169         311 GNIATGNDH--Q-TDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGN  359 (440)
Q Consensus       311 ~nl~~~~~~--~-~~~l~~~g~l~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~  359 (440)
                      +||+..+++  . ...+++.|+++.|+.+|.+++ +.++++|+|+|+||+.+.
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~  384 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP  384 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence            999975442  2 344888999999999999875 699999999999998653

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=3.5e-31  Score=251.29  Aligned_cols=271  Identities=17%  Similarity=0.190  Sum_probs=233.0

Q ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCC-----------CCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q psy9169         131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGNIAGDGARARDLLLG  199 (440)
Q Consensus       131 ~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~-----------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~  199 (440)
                      ...+..|+|+|.|++.+ ++++..+++.|+++.|+.+|..           .++.+++.|+|+|.||+.+++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35566899999999976 8999999999999999999952           23789999999999999887777777754


Q ss_pred             -cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCCCHHHHhhHHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCh
Q psy9169         200 -LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       200 -~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                       .|+||.|+.+|.+++ .+++..++|+|.||+.+.+ .........+++|.|+.+| .+.+++++..++++|++|+...+
T Consensus       125 ~~GaIp~LV~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQLKSES-EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             456999999999766 8999999999999998632 2234445679999999975 66789999999999999998665


Q ss_pred             hhHHHHH-hcCChHHHHHhccCCCh----hHHHHHHHHHHHhhc---CChHHHHHHHHcCCHHHHHHHhcCCChhHHHHH
Q psy9169         277 DKIQAVV-DTGVVPRLVELLDSEET----TILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA  348 (440)
Q Consensus       277 ~~~~~l~-~~g~~~~Lv~lL~~~~~----~v~~~al~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a  348 (440)
                      +....+. ..|+++.|+.+|.+++.    .++..|+++|.||+.   +++++++.+++.|+++.|+.+|.+++..++++|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            4445555 78999999999987654    489999999999997   788899999999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169         349 AWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAE  416 (440)
Q Consensus       349 ~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~~  416 (440)
                      +|+|+|++.+++++             ...+.+.|+++.|..|+.++++++++.|..+|..+..+.++
T Consensus       284 ~~aL~nLa~~~~~~-------------~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          284 CGTLWNLSARNPKD-------------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHTSSCHHH-------------HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHhCCCHHH-------------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999887766             55667899999999999999999999999999999886554

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.98  E-value=1.3e-31  Score=265.10  Aligned_cols=280  Identities=20%  Similarity=0.224  Sum_probs=239.1

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-CCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .++|.|+++|.++++.+|..|+++|+++...++ +....+++.|++|.|+++|. ++++++++.|+|+|+||+.+ ++.+
T Consensus        44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~-~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~  121 (457)
T 1xm9_A           44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRST-TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELK  121 (457)
T ss_dssp             THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH-HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhH
Confidence            579999999999999999999999999976433 56778889999999999996 88999999999999999988 7788


Q ss_pred             HHHHhcCCHHHHHHhhC--------CC--------CHHHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHhhhCCC--
Q psy9169         153 MTVINANAIPKFLQLLS--------SP--------HLNLAEQATWALGNIAGDGARARDLLLGL-GTMPQILALVQPN--  213 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~--------~~--------~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-g~i~~L~~ll~~~--  213 (440)
                      ..+++ |++|.|+.+|.        ++        ++.++..|+|+|+||+.+ +..++.+.+. |+++.|+.++.++  
T Consensus       122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~  199 (457)
T 1xm9_A          122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVA  199 (457)
T ss_dssp             HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence            88888 99999999993        32        356777999999999988 8889999887 9999999777530  


Q ss_pred             --------------------------------------------------------------------------------
Q psy9169         214 --------------------------------------------------------------------------------  213 (440)
Q Consensus       214 --------------------------------------------------------------------------------  213 (440)
                                                                                                      
T Consensus       200 ~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (457)
T 1xm9_A          200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL  279 (457)
T ss_dssp             HTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGG
T ss_pred             ccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHH
Confidence                                                                                            


Q ss_pred             ----------------CcHHHHHHHHHHHHhhhhCCCCCCC-H---HH-HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169         214 ----------------TPTTFLRNIVWAISNLCRNKNPAPD-F---EK-IKICLPLLNQLIHTTDVETLSDICWALSYIS  272 (440)
Q Consensus       214 ----------------~~~~~~~~a~~~L~~l~~~~~~~~~-~---~~-~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~  272 (440)
                                      .++.+++.++|+|+||+.+..+... .   .. ..+++|.|+.+|.+++.+++..|+|+|.+++
T Consensus       280 ~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls  359 (457)
T 1xm9_A          280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS  359 (457)
T ss_dssp             GSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             hCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHh
Confidence                            1245566789999999987633211 1   11 2588999999999999999999999999999


Q ss_pred             cCChhhHHHHHhcCChHHHHHhccCCCh------hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-ChhHH
Q psy9169         273 DGHNDKIQAVVDTGVVPRLVELLDSEET------TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIV  345 (440)
Q Consensus       273 ~~~~~~~~~l~~~g~~~~Lv~lL~~~~~------~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~  345 (440)
                      .+.  ....++..|+++.|+++|.++++      ++...++++|+|++.+++++...+.+.|+++.|..++.++ ++.++
T Consensus       360 ~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~  437 (457)
T 1xm9_A          360 RHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA  437 (457)
T ss_dssp             TSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHH
Confidence            854  34566777999999999987643      6888999999999999999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHhcCC
Q psy9169         346 KEAAWTISNITAGN  359 (440)
Q Consensus       346 ~~a~~~L~nl~~~~  359 (440)
                      +.|+|+|.|+..+.
T Consensus       438 ~~A~~~L~~~~~~~  451 (457)
T 1xm9_A          438 EAARLLLSDMWSSK  451 (457)
T ss_dssp             HHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHHcch
Confidence            99999999998654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.98  E-value=7.7e-31  Score=265.26  Aligned_cols=284  Identities=27%  Similarity=0.371  Sum_probs=254.0

Q ss_pred             cCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          73 KMTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ...++.|+++|.++ ++.++..|+++|.++.+... .....+++.|++|.|+.+|.++++.++..|+|+|++++..++..
T Consensus       129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS-AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence            36799999999987 89999999999999976443 34677888999999999998889999999999999999988889


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                      +..++..|+++.|+.+|.+++..++..|+|+|++++.+...........++++.|+.++.+.+ ..++..++|+|.+|+.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d-~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC-HHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999765222345556899999999998776 8999999999999997


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG  311 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~  311 (440)
                      +.+.........+++|.|+.++.+.++.++..++++|++++.+.+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            75332333344689999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      |++.+++.+.+.+++.|+++.|+.+|.++++.++..|+|+|+|++.+
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            99999988888999999999999999999999999999999999863

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=2.6e-30  Score=235.33  Aligned_cols=242  Identities=28%  Similarity=0.417  Sum_probs=225.7

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      |.+|.|+.+|.+++++++..|+++|.+++.++++.+..+++.|+++.|+.+|.++++.++..++|+|++++.+++..+..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            57999999998888999999999999999998889999999999999999999999999999999999999998999999


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                      +...|+++.|+.++.+++ ..++..++|+|.+++...+.........+++|.|+.++.++++.++..++++|++|+...+
T Consensus        82 ~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999766 8999999999999997653434444557899999999999999999999999999999888


Q ss_pred             hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      ...+.+++.|+++.|+.+|.++++.++..|+++|+|++.+++...+.+.+.|+++.|+.++.++++.+++.|+|+|+|++
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  240 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK  240 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC
Q psy9169         357 AGN  359 (440)
Q Consensus       357 ~~~  359 (440)
                      ...
T Consensus       241 ~~~  243 (252)
T 4hxt_A          241 SGG  243 (252)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            754

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=4.7e-30  Score=234.01  Aligned_cols=240  Identities=34%  Similarity=0.552  Sum_probs=221.9

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      ...+.++..|.+++++++..|+++|.++.+.+++.+..+++.|+++.|+.+|.++++.++..|+|+|++++.+++..+..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            46899999999999999999999998877766778889999999999999999999999999999999999988999999


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                      +...|+++.|+.++.+++ ..++..++|+|.+|+.+...........+++|.|+.++.++++.++..++|+|++++..++
T Consensus        92 i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  170 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence            999999999999999876 8999999999999998863222445567899999999999999999999999999999888


Q ss_pred             hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      +....+++.|+++.|+.+|.++++.++..|+++|+|++.+++.....+++.|+++.|..++.++++.+++.|+|+|+||+
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             c
Q psy9169         357 A  357 (440)
Q Consensus       357 ~  357 (440)
                      .
T Consensus       251 ~  251 (252)
T 4db8_A          251 S  251 (252)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=1.8e-29  Score=251.81  Aligned_cols=290  Identities=16%  Similarity=0.182  Sum_probs=243.4

Q ss_pred             HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Cchh
Q psy9169         115 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARA  193 (440)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~  193 (440)
                      ..+.+|.|+.+|.++++.+|..|+|+|.+++.++++.+..+++.|+||.|+.+|.+++..+++.|+|+|+||+.. ++..
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            467899999999999999999999999999998899999999999999999999999999999999999999985 6889


Q ss_pred             HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc------------------C
Q psy9169         194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH------------------T  255 (440)
Q Consensus       194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~------------------~  255 (440)
                      +..+.+.|+|++|+.+|.+..+.++++.++++|.+|+..+  .....+..+++|.|+.++.                  .
T Consensus       126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            9999999999999999997655889999999999999864  2334444678999999871                  2


Q ss_pred             CCHHHHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhccC------CChhHHHHHHHHHHHhhcCChH---------
Q psy9169         256 TDVETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDS------EETTILTAALRTVGNIATGNDH---------  319 (440)
Q Consensus       256 ~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~------~~~~v~~~al~~L~nl~~~~~~---------  319 (440)
                      .++.++..++++|.+|+..+++..+.+++. |+++.|+.+|.+      .+...+..|+++|.||+.....         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            367999999999999999888767788875 677899999864      4567899999999999875211         


Q ss_pred             ----------------HHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHc
Q psy9169         320 ----------------QTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEES  382 (440)
Q Consensus       320 ----------------~~~~l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~  382 (440)
                                      ..+.+++.++++.|+.+|. +.++.+++.|+|+|+||+++...+.         ..+...+.+.
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~---------~~~~~~v~~~  354 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG---------RYIRSALRQE  354 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHH---------HHHHHHHTSH
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcccc---------HHHHHHHHHc
Confidence                            1122334456778899996 4578999999999999998864331         1224567788


Q ss_pred             CcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         383 GGLEKLEALQHHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       383 g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                      ||++.|..|+.++++++.+.|..+|..+-.+..
T Consensus       355 ~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~  387 (584)
T 3l6x_A          355 KALSAIADLLTNEHERVVKAASGALRNLAVDAR  387 (584)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence            999999999999999999999999999876544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=8.5e-29  Score=250.08  Aligned_cols=325  Identities=17%  Similarity=0.207  Sum_probs=282.6

Q ss_pred             CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..++.|++.|.+ ++++++..|+..|+++.. .. .+...+++.|++|.|+.+|.++++.++..|+++|.+++.+++..+
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-Cc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence            358899999974 589999999999999743 33 367888899999999999988999999999999999998877888


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      ..+.+.|++|.|+.+|.+++.+++..++.+|.+++..++..+..+...|+++.|+.++.+.++......++.+|.+++..
T Consensus       137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  216 (529)
T 1jdh_A          137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence            88999999999999999999999999999999999988899999999999999999999877778888999999999976


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                      + .........++++.|+.++.+.++.++..++|+|.+++...+...   ...|+++.|+++|.++++.++..|+++|+|
T Consensus       217 ~-~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          217 S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             T-THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             c-ccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4 333344457899999999999999999999999999997764321   124789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA  390 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~  390 (440)
                      ++.++++..+.+.+.|+++.|+.++.+.  ++.++..|+++|+|++.+.++.          +..+..+.+.|+++.|..
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~----------~~~~~~i~~~~~i~~L~~  362 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------EMAQNAVRLHYGLPVVVK  362 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------HHHHHHHHHTTCHHHHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH----------HHHHHHHHHcCChhHHHH
Confidence            9998888999999999999999999763  3789999999999998764431          234567778999999999


Q ss_pred             HhcCCc-HHHHHHHHHHHHhhCCCC
Q psy9169         391 LQHHEN-ETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       391 L~~~~~-~~v~~~a~~il~~~~~~~  414 (440)
                      ++.+++ ++++..|.++|.++..+.
T Consensus       363 lL~~~~~~~v~~~a~~~l~nl~~~~  387 (529)
T 1jdh_A          363 LLHPPSHWPLIKATVGLIRNLALCP  387 (529)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred             HhccccchHHHHHHHHHHHHHhcCh
Confidence            999886 699999999999998654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.97  E-value=6e-28  Score=253.74  Aligned_cols=333  Identities=15%  Similarity=0.184  Sum_probs=283.3

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.|+++|+++++.++..|+++|.++..... .....+.+.|+++.|+.+|.++++.++..++.+|.+++.++++.+.
T Consensus       234 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~  312 (780)
T 2z6g_A          234 GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL  312 (780)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence            578999999999999999999999999987644 4456777899999999999888999999999999999998889999


Q ss_pred             HHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      .+.+.|+++.|+.+|++.+ ...++.++.+|.+++.. +..+..++..|+++.|+.++.+.+ ..+++.++|+|.+|+..
T Consensus       313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~-~~~~~~a~~~L~~L~~~  390 (780)
T 2z6g_A          313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDA  390 (780)
T ss_dssp             HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCc-hHHHHHHHHHHHHHhcc
Confidence            9999999999999999876 56778899999999975 667888999999999999998776 78999999999999987


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-C-hhHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-E-TTILTAALRTV  310 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~-~~v~~~al~~L  310 (440)
                      .....   ...+++|.|+.++.+.++.++..++|+|++|+.++++....+++.|+++.|+.+|.+. + ..++..|+++|
T Consensus       391 ~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL  467 (780)
T 2z6g_A          391 ATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  467 (780)
T ss_dssp             CTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            63321   2367999999999999999999999999999999888889999999999999999763 3 38999999999


Q ss_pred             HHhhcCChH---HHHHHHHcCCHHHHHHHhcCCCh-hHHHHHHHHHHHHhcCChHHHHHHhhcCcc--------------
Q psy9169         311 GNIATGNDH---QTDCVIQAGGLQKMKKLLSSSRV-NIVKEAAWTISNITAGNSRQIDHVIQEGEL--------------  372 (440)
Q Consensus       311 ~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~-~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~--------------  372 (440)
                      +||+..+++   ....+.+.|+++.|+.+|.+++. .++++|+|+|+||+.++..+ ..+++.|..              
T Consensus       468 ~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~  546 (780)
T 2z6g_A          468 RHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDT  546 (780)
T ss_dssp             HHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH-HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH-HHHHHCCCHHHHHHHHHhcchhH
Confidence            999876543   24568889999999999998874 99999999999999865443 444432110              


Q ss_pred             ------------------------------------hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         373 ------------------------------------NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       373 ------------------------------------~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                                                          ...+..+.+.|+++.|..++.+++++|+..|..+|..+..+
T Consensus       547 ~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          547 QRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  623 (780)
T ss_dssp             HHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence                                                01123477899999999999999999999999998887643

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.97  E-value=1.9e-29  Score=230.03  Aligned_cols=241  Identities=33%  Similarity=0.537  Sum_probs=219.0

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ...++.++..|+++|++++..|++.|+++++.. ++.+..+++.|++|.|+.+|.++++.++..|+|+|++++.++++.+
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            356899999999999999999999999988863 3567889999999999999988889999999999999999889999


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      ..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+.+.....+...|+++.|+.++.+++ ..++..++|+|.+|+.+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999886555488889999999999998775 89999999999999987


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                      .+.........+++|.|+.++.++++.++..++++|++++..+++....+++.|+++.|+.++.++++.++..|+++|+|
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            63333344557899999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             hhc
Q psy9169         313 IAT  315 (440)
Q Consensus       313 l~~  315 (440)
                      |+.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=2.2e-28  Score=222.58  Aligned_cols=242  Identities=26%  Similarity=0.370  Sum_probs=222.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .++.|++.|.+++++++..|+++|.++....+ .....+++.|+++.|+.+|.++++.++..|+|+|.+++.++++.+..
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            48899999999999999999999999976554 46788899999999999998889999999999999999988999999


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                      +.+.|+++.|+.+|.++++.++..|+|+|++++..++..+..+...|+++.|+.++.+.+ ..++..++|+|.+++.+.+
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~-~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999887889999999999999999999777 8999999999999998753


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      .........+++|.|+.++.++++.++..++++|++++..+++..+.+.+.|+++.|+.++.++++.++..|+++|+|++
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  240 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK  240 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            33344556789999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             cCCh
Q psy9169         315 TGND  318 (440)
Q Consensus       315 ~~~~  318 (440)
                      ...+
T Consensus       241 ~~~~  244 (252)
T 4hxt_A          241 SGGW  244 (252)
T ss_dssp             HTCB
T ss_pred             cCCC
Confidence            7654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.96  E-value=7.3e-28  Score=248.92  Aligned_cols=326  Identities=17%  Similarity=0.206  Sum_probs=281.0

Q ss_pred             CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKSS-NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s~-~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..++.|++.|.++ +++++..|+..|+++. ... .....+++.|+++.|+.+|.++++.++..|+++|.+++..++..+
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls-~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~  133 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  133 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHh-cCh-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence            3588999999864 8999999999999764 433 367888899999999999988899999999999999998877888


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      ..+++.|+++.|+.+|.++++.++..++.+|.+++..++..+..+...|+++.|+.++.+.....++..++.+|.+|+..
T Consensus       134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~  213 (644)
T 2z6h_A          134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  213 (644)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence            88999999999999999999999999999999999877889999999999999999999887778899999999999976


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                      . .........++++.|+.++.+.+..++..++|+|.+|+......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       214 ~-~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          214 S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             T-THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             c-ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4 33344455789999999999999999999999999999765432   1123789999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCC-C-hhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSS-R-VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA  390 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~-~-~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~  390 (440)
                      |+.+++..++.+.+.|+++.|+.++.+. + +.++..|+++|+||+.+.++.          ......+.+.|+++.|..
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~----------~~~q~~v~~~~~l~~L~~  359 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------EMAQNAVRLHYGLPVVVK  359 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------HHHHHHHHHTTHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH----------HHHHHHHHHccChHHHHH
Confidence            9999888899999999999999999863 3 799999999999999754321          122345667899999999


Q ss_pred             HhcCCc-HHHHHHHHHHHHhhCCCCc
Q psy9169         391 LQHHEN-ETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       391 L~~~~~-~~v~~~a~~il~~~~~~~~  415 (440)
                      ++.+++ +.+++.|..+|.++...++
T Consensus       360 lL~~~~~~~v~~~a~~~L~nLa~~~~  385 (644)
T 2z6h_A          360 LLHPPSHWPLIKATVGLIRNLALCPA  385 (644)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             HhCccCchHHHHHHHHHHHHHccCHH
Confidence            998875 7999999999999986543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.96  E-value=2.4e-27  Score=219.06  Aligned_cols=236  Identities=14%  Similarity=0.227  Sum_probs=197.1

Q ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhh
Q psy9169         131 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL  209 (440)
Q Consensus       131 ~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~l  209 (440)
                      .+-+..|+..|.+++.. .++...+...|++|.|+. +|.++++.+++.|+|+|+|++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            46788899999999964 567778899999999999 9999999999999999999999999999999999999999999


Q ss_pred             hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChH
Q psy9169         210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP  289 (440)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~  289 (440)
                      |.++.+..+++.++|+|++++++.                                          +...+.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~------------------------------------------~~~~~~~~~~ggi~  170 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQ------------------------------------------EAGLLQFLRLDGFS  170 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTC------------------------------------------HHHHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCC------------------------------------------cHHHHHHHHCCCHH
Confidence            986544677777777777777654                                          23345677789999


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhc
Q psy9169         290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE  369 (440)
Q Consensus       290 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~  369 (440)
                      .|+.+|.+++..++..|+|+|++++.++++.++.+++.|+++.|+.+|.++++.++..|+++|+||+.+.+..+..+-. 
T Consensus       171 ~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~-  249 (296)
T 1xqr_A          171 VLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE-  249 (296)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC-
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999885543332211 


Q ss_pred             CcchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhCCCCcc
Q psy9169         370 GELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSAE  416 (440)
Q Consensus       370 ~~~~~~~~~l~~~g~l~~l~~L~~~~-~~~v~~~a~~il~~~~~~~~~  416 (440)
                       ....+..+|++.     ++.++.+. +.++|++|..||++||.++++
T Consensus       250 -~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~f~~~~~  291 (296)
T 1xqr_A          250 -PELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTCFSSPAD  291 (296)
T ss_dssp             -GGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHHCC----
T ss_pred             -cHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHHcCCCCC
Confidence             113467777764     77788676 799999999999999976543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.96  E-value=2.8e-27  Score=248.70  Aligned_cols=325  Identities=16%  Similarity=0.210  Sum_probs=279.8

Q ss_pred             CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..++.|++.|.+ .+++++..|+.+|+++.. .. .+...+.+.|+++.|+.+|.++++.++..|+|+|.+|+..++..+
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~  269 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK  269 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            468999999985 489999999999999754 33 347788889999999999988899999999999999999888888


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                      ..+.+.|+++.|+.+|.+++..++..++.+|.+++..++..+..+...|+++.|+.+++..........++.+|.+|+..
T Consensus       270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  349 (780)
T 2z6g_A          270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  349 (780)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence            89999999999999999999999999999999999888889999999999999999999887777888899999999975


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                      . .........++++.|+.++.+.+..++..++|+|.+|+......   ....++++.|+.+|.+.++.++..|+++|++
T Consensus       350 ~-~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          350 S-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             T-THHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             h-HHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4 33334445789999999999999999999999999999766432   1224689999999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCC-C-hhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSS-R-VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA  390 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~-~-~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~  390 (440)
                      |+.+++..++.+++.|+++.|+.+|.+. + +.++..|+|+|+||+.+.++.          ......+...|+++.|..
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~----------~~~~~~v~~~~~l~~L~~  495 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDA----------EMAQNAVRLHYGLPVVVK  495 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTH----------HHHHHHHHHTTCHHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchH----------HHHHHHHHHcCCHHHHHH
Confidence            9999988999999999999999999863 3 489999999999998764331          123456678899999999


Q ss_pred             HhcCCcH-HHHHHHHHHHHhhCCCC
Q psy9169         391 LQHHENE-TVYQKCYKIISMAFNDS  414 (440)
Q Consensus       391 L~~~~~~-~v~~~a~~il~~~~~~~  414 (440)
                      ++.+++. .+++.|+.+|.++....
T Consensus       496 lL~~~~~~~v~~~A~~aL~nLa~~~  520 (780)
T 2z6g_A          496 LLHPPSHWPLIKATVGLIRNLALCP  520 (780)
T ss_dssp             TTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred             HhcCCChHHHHHHHHHHHHHHhcCH
Confidence            9988874 99999999999987543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=5.5e-25  Score=194.67  Aligned_cols=201  Identities=30%  Similarity=0.487  Sum_probs=183.3

Q ss_pred             HHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q psy9169         114 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA  193 (440)
Q Consensus       114 i~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~  193 (440)
                      ...|..+.|+.+|.++++.++..|+|+|.+++.++++.+..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+++..
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            34588999999999999999999999999999888999999999999999999999999999999999999999888889


Q ss_pred             HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169         194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD  273 (440)
Q Consensus       194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~  273 (440)
                      +..+.+.|+++.|+.+|.+++ ..++..++|+|.+++.+...........+++|.|+.++.++++.++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHcCCc-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            999999999999999999886 8999999999999998653333344567899999999999999999999999999999


Q ss_pred             CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      .+++....+.+.|+++.|+.++.++++.++..|+++|++++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            888888899999999999999999999999999999999974

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=5.4e-25  Score=194.70  Aligned_cols=200  Identities=32%  Similarity=0.523  Sum_probs=183.6

Q ss_pred             hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169         157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA  236 (440)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  236 (440)
                      ..|..+.|+.+|.++++.++..|+|+|++++..++..+..+.+.|+++.|+.+|.+++ ..++..++|+|.+++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHH
Confidence            4588999999999999999999999999999888889999999999999999999876 899999999999999765344


Q ss_pred             CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC
Q psy9169         237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG  316 (440)
Q Consensus       237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~  316 (440)
                      .......+++|.|+.+|.+.++.++..++|+|++++...++....+++.|+++.|+.+|.++++.++..|+++|+|++.+
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            44455678999999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         317 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       317 ~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      ++.....+.+.|+++.|..++.++++.+++.|+|+|.+++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            88899999999999999999999999999999999999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.5e-24  Score=217.59  Aligned_cols=324  Identities=13%  Similarity=0.111  Sum_probs=255.3

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-hCCHHHHHHhcc-CCChHHHHHHHHHHHHHhCCCcH--
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIE-AGVVPICVELLD-DENPNTQFEATWALTNIASGTSE--  150 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~i~~Lv~lL~-~~~~~i~~~a~~~L~nla~~~~~--  150 (440)
                      -.+.+++.|.+++.+.+..|+..|..+ +..+ ...+.+++ .|+++.|+++++ ..+..+.+.++.+|.|++...+.  
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYL-Sl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~  412 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYL-SLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXX  412 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHH-TTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHH-hCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccc
Confidence            346677777787777799999999865 5443 33455554 677999999996 47889999999999999874331  


Q ss_pred             ------------------------------------HHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q psy9169         151 ------------------------------------QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR  194 (440)
Q Consensus       151 ------------------------------------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (440)
                                                          .+..+.+.|++|.|+.+++++++.+++.|+|+|.||+.+ +..|
T Consensus       413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R  491 (778)
T 3opb_A          413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFI  491 (778)
T ss_dssp             CCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGH
T ss_pred             hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHH
Confidence                                                356778999999999999999999999999999999987 8899


Q ss_pred             HHHHhcCChHHHHhhhCCCCcH--HHHHHHHHHHHhhhhCCCCCCCHH--HHhhHHHHHHHhhcC-CCH-----------
Q psy9169         195 DLLLGLGTMPQILALVQPNTPT--TFLRNIVWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHT-TDV-----------  258 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~~L~~ll~~-~d~-----------  258 (440)
                      ..+++.|++++|+.++.+....  ..+..|+++|.++....+|..-+.  ...+++|.|+.+|.. +..           
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence            9999999999999999977633  278999999999997654321100  013899999999983 211           


Q ss_pred             --HHHHHHHHHHHHhccCCh----hhHHHHHhc-CChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc----
Q psy9169         259 --ETLSDICWALSYISDGHN----DKIQAVVDT-GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA----  327 (440)
Q Consensus       259 --~i~~~a~~~L~~l~~~~~----~~~~~l~~~-g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~----  327 (440)
                        --...|+.+|.||+..++    +..+.++.. |+++.|..+|.+++..++..|+++++||+...+...+.+.+.    
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              126799999999998863    334667885 999999999999999999999999999998554221234322    


Q ss_pred             --CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC--CcHHHHHHH
Q psy9169         328 --GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH--ENETVYQKC  403 (440)
Q Consensus       328 --g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~--~~~~v~~~a  403 (440)
                        +.++.|+.++.+++..+|+.|+|+|+|++.+.+...+.+            ++..+|++.+..++..  ++++++.++
T Consensus       652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l------------l~~~~gi~~Ll~lL~~~~~~~~l~~R~  719 (778)
T 3opb_A          652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL------------LTKKELIENAIQVFADQIDDIELRQRL  719 (778)
T ss_dssp             HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH------------TTCHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH------------HHccccHHHHHHHHhccCCCHHHHHHH
Confidence              238899999999999999999999999987665543333            3334788888888777  899999999


Q ss_pred             HHHHHhhCCC
Q psy9169         404 YKIISMAFND  413 (440)
Q Consensus       404 ~~il~~~~~~  413 (440)
                      ..++..+++.
T Consensus       720 ~~~l~NL~~~  729 (778)
T 3opb_A          720 LMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999999873

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=3.9e-22  Score=184.19  Aligned_cols=199  Identities=12%  Similarity=0.104  Sum_probs=173.1

Q ss_pred             HHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHH-hccCCChHHHHHHHHHHH
Q psy9169          76 VPEMIEGMKSS------------NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE-LLDDENPNTQFEATWALT  142 (440)
Q Consensus        76 i~~lv~~L~s~------------~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~-lL~~~~~~i~~~a~~~L~  142 (440)
                      ++..+..|.++            +.+.+..|+..|..++...  +....+++.|++|.|+. +|.++++.++..|+|+|+
T Consensus        30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg  107 (296)
T 1xqr_A           30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG  107 (296)
T ss_dssp             HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            45556666654            2367888999999886432  34567889999999999 999999999999999999


Q ss_pred             HHhCCCcHHHHHHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHH
Q psy9169         143 NIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN  221 (440)
Q Consensus       143 nla~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~  221 (440)
                      +++.+++..+..+++.|++|.|+.+|++ ++..+++.|+|+|+|++.+.+.....+...|+++.|+.+|.+++ ..++..
T Consensus       108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d-~~v~~~  186 (296)
T 1xqr_A          108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVK  186 (296)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC-HHHHHH
Confidence            9999999999999999999999999995 47899999999999999988887788888999999999999876 899999


Q ss_pred             HHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169         222 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       222 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                      ++|+|++++.+.+.........+++|.|+.+|.+.++.++..++++|++|+...+.
T Consensus       187 A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~  242 (296)
T 1xqr_A          187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  242 (296)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChh
Confidence            99999999988644455666789999999999999999999999999999987553

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.89  E-value=2e-22  Score=178.37  Aligned_cols=197  Identities=18%  Similarity=0.181  Sum_probs=171.3

Q ss_pred             CHHHHHHhccCCCh--HHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169         118 VVPICVELLDDENP--NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD  195 (440)
Q Consensus       118 ~i~~Lv~lL~~~~~--~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (440)
                      .+|.|+++|.++++  +++..|+++|.+++.++++.+..+++.|+||.|+.+|+++++++++.|+|+|.||+.+++..+.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999988887  8999999999999998899999999999999999999999999999999999999998899999


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc----------------CCCHH
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----------------TTDVE  259 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~----------------~~d~~  259 (440)
                      .+.+.|+||+|+.+|.+..+.++++.++.+|++|+.....  ...+..+.+|.|+.++.                ..++.
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~--k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL--KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG--HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh--HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            9999999999999998544489999999999999976522  23444678999988662                13679


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhccCC------ChhHHHHHHHHHHHhhcC
Q psy9169         260 TLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSE------ETTILTAALRTVGNIATG  316 (440)
Q Consensus       260 i~~~a~~~L~~l~~~~~~~~~~l~~~-g~~~~Lv~lL~~~------~~~v~~~al~~L~nl~~~  316 (440)
                      ++..+.++|.+|+..+++..+.+.+. |+++.|+.+++..      +...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999999887777888876 7789999999652      457899999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=3.2e-22  Score=177.01  Aligned_cols=200  Identities=14%  Similarity=0.164  Sum_probs=168.0

Q ss_pred             ccCCHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169          72 IKMTVPEMIEGMKSSNP--KMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        72 ~~~~i~~lv~~L~s~~~--~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~  149 (440)
                      ..+++|.++++|+++++  ++|..|++.++++...+. ++...+++.|+||.|+++|.++++++|..|+|+|.||+.+++
T Consensus         6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~-~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~   84 (233)
T 3tt9_A            6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKS-EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN   84 (233)
T ss_dssp             CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCc-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence            45789999999999988  899999999998865443 567889999999999999999999999999999999999889


Q ss_pred             HHHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---C------------C
Q psy9169         150 EQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---P------------N  213 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~------------~  213 (440)
                      +++..+.+.|+||.|+++|. +++.+++++|+.+|+||+.. +..+..+.. +++++|+.++.   .            .
T Consensus        85 ~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence            99999999999999999998 57899999999999999977 556666665 46999998764   0            1


Q ss_pred             CcHHHHHHHHHHHHhhhhCCCCCCCHHH-HhhHHHHHHHhhcC------CCHHHHHHHHHHHHHhccC
Q psy9169         214 TPTTFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHT------TDVETLSDICWALSYISDG  274 (440)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~ll~~------~d~~i~~~a~~~L~~l~~~  274 (440)
                      .+..++++++++|.||+........... ..++++.|+.+++.      .+...++.++.+|.||+..
T Consensus       163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            2468999999999999986422223232 25789999999864      2568999999999999864

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=7.1e-21  Score=192.53  Aligned_cols=280  Identities=12%  Similarity=0.102  Sum_probs=225.4

Q ss_pred             CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCC-------------------C------------------cHHHHHH
Q psy9169          74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERH-------------------P------------------PIDELIE  115 (440)
Q Consensus        74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~-------------------~------------------~~~~ii~  115 (440)
                      ..++.|++.+.+ ++..+.+.++..|.|+....++                   |                  ....+++
T Consensus       376 ~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~e  455 (778)
T 3opb_A          376 SFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILR  455 (778)
T ss_dssp             HHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHH
Confidence            347889999984 7888999999999999764331                   0                  1245567


Q ss_pred             hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHH---HHHHHHHHHHHhhCC-Cc
Q psy9169         116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN---LAEQATWALGNIAGD-GA  191 (440)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~---v~~~a~~~L~nl~~~-~~  191 (440)
                      .|++|.|+.++.++++.+|..|+|+|.+++.. ++++..+++.|+++.|+.+|.+....   +++.|+++|.+|+.. +|
T Consensus       456 aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np  534 (778)
T 3opb_A          456 TELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP  534 (778)
T ss_dssp             TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred             CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence            89999999999989999999999999999855 88999999999999999999987644   899999999999943 33


Q ss_pred             hhHHHHHh----cCChHHHHhhhCCCCcH-------------HHHHHHHHHHHhhhhCCCC---C-CCHHHH-hhHHHHH
Q psy9169         192 RARDLLLG----LGTMPQILALVQPNTPT-------------TFLRNIVWAISNLCRNKNP---A-PDFEKI-KICLPLL  249 (440)
Q Consensus       192 ~~r~~i~~----~g~i~~L~~ll~~~~~~-------------~~~~~a~~~L~~l~~~~~~---~-~~~~~~-~~~~~~L  249 (440)
                      ..   ++.    .|++++|+.+|..+...             --...++.+|.||+..+++   . ...... .+++|.|
T Consensus       535 ~~---~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L  611 (778)
T 3opb_A          535 GL---IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTI  611 (778)
T ss_dssp             HH---HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHH
T ss_pred             HH---HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHH
Confidence            32   221    38999999999832111             2267899999999988632   1 122333 3799999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC------ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHH
Q psy9169         250 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG------VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC  323 (440)
Q Consensus       250 ~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g------~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~  323 (440)
                      ..++.+++..++.+|++++++|+.......+.+.+.+      -++.|+.++...+..++..|+++|+|++++++...+.
T Consensus       612 ~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~  691 (778)
T 3opb_A          612 ENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKE  691 (778)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHH
Confidence            9999999999999999999999986553223443322      3788999999999999999999999999888888888


Q ss_pred             HHHc-CCHHHHHHHhcC--CChhHHHHHHHHHHHHhc
Q psy9169         324 VIQA-GGLQKMKKLLSS--SRVNIVKEAAWTISNITA  357 (440)
Q Consensus       324 l~~~-g~l~~L~~ll~~--~~~~i~~~a~~~L~nl~~  357 (440)
                      +++. ++++.++.++..  +++.++..++.++.||+.
T Consensus       692 ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            8887 799999999998  789999999999999995

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=2.4e-15  Score=148.51  Aligned_cols=331  Identities=14%  Similarity=0.130  Sum_probs=253.6

Q ss_pred             cCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCc
Q psy9169          73 KMTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        73 ~~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~  149 (440)
                      ..+++.|.+.+++ .-.+.|..|+..|+.+. ++    ...-+.+++++.|+..|  ...|.++...++.+|.++....+
T Consensus        20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s-k~----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           20 AETIQKLCDRVASSTLLDDRRNAVRALKSLS-KK----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTT-TT----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhHHHHHHHHHhhccchhHHHHHHHHHHHHH-HH----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            4678999999985 45899999999999773 22    13445567899999999  34688899999999998876543


Q ss_pred             H-----------------HHHHH-HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHH-hcCChHHHHhh
Q psy9169         150 E-----------------QTMTV-INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-ARDLLL-GLGTMPQILAL  209 (440)
Q Consensus       150 ~-----------------~~~~i-~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~r~~i~-~~g~i~~L~~l  209 (440)
                      +                 .++.+ .+.+.++.|+.+|++.+..+|..++.+|..|+...+. .++.++ ..++++.|+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence            2                 22233 4568899999999999999999999999999987777 777777 55999999999


Q ss_pred             hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCC----HHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169         210 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD----VETLSDICWALSYISDGHNDKIQAVVDT  285 (440)
Q Consensus       210 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d----~~i~~~a~~~L~~l~~~~~~~~~~l~~~  285 (440)
                      |.+.. ..++..++..|.+|+.+...-.+.....++++.|+.++..+.    ..+..+++.++.+|...+......+.+.
T Consensus       175 L~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt  253 (651)
T 3grl_A          175 LADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEG  253 (651)
T ss_dssp             GGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHc
Confidence            98776 788999999999999987444444555799999999997644    3789999999999999998787888999


Q ss_pred             CChHHHHHhccCCChh------HHH---HHHHHHHHhhcC------ChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHH
Q psy9169         286 GVVPRLVELLDSEETT------ILT---AALRTVGNIATG------NDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEA  348 (440)
Q Consensus       286 g~~~~Lv~lL~~~~~~------v~~---~al~~L~nl~~~------~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a  348 (440)
                      |+++.|..+|..+...      ...   .++.++.-++..      +..+...+.+.|+++.|++++..+  ...++.+|
T Consensus       254 ~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~A  333 (651)
T 3grl_A          254 SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTET  333 (651)
T ss_dssp             TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHH
Confidence            9999999999754321      222   366677777765      234667889999999999998876  45799999


Q ss_pred             HHHHHHHhcCChHHHHHHhhcC--c--chHHHHHHHHcCcHHHHHHHh-cCCcHHHHHHHHHHHHhhCCCCccc
Q psy9169         349 AWTISNITAGNSRQIDHVIQEG--E--LNQMALLVEESGGLEKLEALQ-HHENETVYQKCYKIISMAFNDSAEN  417 (440)
Q Consensus       349 ~~~L~nl~~~~~~~~~~~i~~~--~--~~~~~~~l~~~g~l~~l~~L~-~~~~~~v~~~a~~il~~~~~~~~~~  417 (440)
                      ..+++.+..|++..-+.+....  .  ..+.        .+..+..+. .+...+++-.|...++.|+.+.++.
T Consensus       334 l~tla~~irgN~~~Q~~fa~~~vp~~~~~p~--------li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~  399 (651)
T 3grl_A          334 INTVSEVIRGCQVNQDYFASVNAPSNPPRPA--------IVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKG  399 (651)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHCEESSSSCEEH--------HHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHhhccCCCCCCcCh--------HHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHH
Confidence            9999999999877555444321  0  0011        122233333 3456899999999999999876543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.71  E-value=3.3e-15  Score=137.76  Aligned_cols=255  Identities=13%  Similarity=0.113  Sum_probs=196.9

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.|+..|.++++.++..|++.|.++-   .         .++++.|+.+|.++++.++..|+++|+.+....... .
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~---~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~-~   89 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRG---G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-D   89 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC---C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-H
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccC---C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-h
Confidence            57899999999999999999999999773   1         236889999999999999999999999987432211 1


Q ss_pred             HHHhcCCHHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPKFL-QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~L~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                           .+++.|. .++.++++.++..++++|+++....+...     ...++.|+..+.+.+ ..++..++++|.++...
T Consensus        90 -----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~-~~vR~~a~~aL~~~~~~  158 (280)
T 1oyz_A           90 -----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKS-TNVRRATAFAISVINDK  158 (280)
T ss_dssp             -----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSC-HHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCC-HHHHHHHHHHHHhcCCH
Confidence                 1334444 34577889999999999999984333221     235788888888766 89999999999987642


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                                 ..+|.|..++.++++.++..++++|+.+....+         .+++.|+.+|.++++.++..|+++|++
T Consensus       159 -----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~  218 (280)
T 1oyz_A          159 -----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY  218 (280)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence                       378999999999999999999999999864333         247889999999999999999999999


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHh
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ  392 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~  392 (440)
                      +.           +...++.|..++.++  .++..|+++|+.+..  +.                      .++.|..++
T Consensus       219 ~~-----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~--~~----------------------~~~~L~~~l  261 (280)
T 1oyz_A          219 RK-----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD--KT----------------------LLPVLDTML  261 (280)
T ss_dssp             TT-----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC--GG----------------------GHHHHHHHH
T ss_pred             hC-----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCc--hh----------------------hhHHHHHHH
Confidence            85           235788899999764  489999999999853  22                      245555544


Q ss_pred             -cCCcHHHHHHHHHHHHh
Q psy9169         393 -HHENETVYQKCYKIISM  409 (440)
Q Consensus       393 -~~~~~~v~~~a~~il~~  409 (440)
                       .++++++...+...+++
T Consensus       262 ~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          262 YKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             TTSSCCHHHHHHHHHHTC
T ss_pred             hcCCCcHHHHHHHHHhhc
Confidence             45677888887777653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.68  E-value=5.3e-15  Score=146.07  Aligned_cols=294  Identities=11%  Similarity=0.204  Sum_probs=230.5

Q ss_pred             CCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------cHHHHHH-hCCHHHHHHhccCCChHHH
Q psy9169          74 MTVPEMIEGMKS--SNPKMRMIATRSARKMLSKERHP----------------PIDELIE-AGVVPICVELLDDENPNTQ  134 (440)
Q Consensus        74 ~~i~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~----------------~~~~ii~-~g~i~~Lv~lL~~~~~~i~  134 (440)
                      .+++.|+..|+.  .|.++...++..|.++++....+                ..+.+++ .+.++.|+.+|.+.+..++
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR  139 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVR  139 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHH
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHH
Confidence            578999999984  57888888999998888755422                1223433 5789999999999999999


Q ss_pred             HHHHHHHHHHhCCCcH-HHHHHHh-cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC
Q psy9169         135 FEATWALTNIASGTSE-QTMTVIN-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP  212 (440)
Q Consensus       135 ~~a~~~L~nla~~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~  212 (440)
                      ..++.+|..|+...++ ..+.+.. .++++.|+.+|.++.+.+|..++..|.+|+.+++..++.+.-.|+++.|..++..
T Consensus       140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~  219 (651)
T 3grl_A          140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITE  219 (651)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHh
Confidence            9999999999988877 6666774 5999999999999999999999999999999999999999999999999999985


Q ss_pred             CC---cHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCH------HHHHH---HHHHHHHhccCC-----
Q psy9169         213 NT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV------ETLSD---ICWALSYISDGH-----  275 (440)
Q Consensus       213 ~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~------~i~~~---a~~~L~~l~~~~-----  275 (440)
                      ..   ...+...|+.++.||.+............+++|.|..++...++      .....   ++.++.-++..+     
T Consensus       220 Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~  299 (651)
T 3grl_A          220 EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGA  299 (651)
T ss_dssp             HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHH
T ss_pred             cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            33   24788999999999999863345556667899999999875432      13333   555666665442     


Q ss_pred             -hhhHHHHHhcCChHHHHHhccCC--ChhHHHHHHHHHHHhhcCChHHHHHHHHcC---------CHHHHHHHhcCC-Ch
Q psy9169         276 -NDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAG---------GLQKMKKLLSSS-RV  342 (440)
Q Consensus       276 -~~~~~~l~~~g~~~~Lv~lL~~~--~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---------~l~~L~~ll~~~-~~  342 (440)
                       ......+.+.|+++.|++++..+  ...++..|+.+++.+..+++...+.+....         ++..|+.++.+. ..
T Consensus       300 t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~  379 (651)
T 3grl_A          300 TSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF  379 (651)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccH
Confidence             23456788999999999998766  467999999999999999998888776543         344455556554 46


Q ss_pred             hHHHHHHHHHHHHhcCChHHHHHHh
Q psy9169         343 NIVKEAAWTISNITAGNSRQIDHVI  367 (440)
Q Consensus       343 ~i~~~a~~~L~nl~~~~~~~~~~~i  367 (440)
                      .+|..|+.++..+..++.+.-..++
T Consensus       380 ~lR~Aa~~cl~ay~~~N~~~Q~~i~  404 (651)
T 3grl_A          380 VLRCAVLYCFQCFLYKNQKGQGEIV  404 (651)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            8999999999999988765433333

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.65  E-value=1.8e-14  Score=132.89  Aligned_cols=202  Identities=13%  Similarity=0.096  Sum_probs=162.2

Q ss_pred             HHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q psy9169         113 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR  192 (440)
Q Consensus       113 ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~  192 (440)
                      ....+.++.|+..|.++++.++..|+++|+++..           .++++.|+.+|.++++.++..|+++|+.+......
T Consensus        19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            4456789999999999999999999999999972           24689999999999999999999999999754322


Q ss_pred             hHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q psy9169         193 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS  272 (440)
Q Consensus       193 ~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~  272 (440)
                      ..      ..++.|...+.++.+..++..++++|..++....     .....+++.|..++.+.++.++..++++|+.+.
T Consensus        88 ~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 ED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             HH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             ch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            11      1234444333344458999999999999986531     113467899999999999999999999999876


Q ss_pred             cCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q psy9169         273 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI  352 (440)
Q Consensus       273 ~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L  352 (440)
                      .           .++++.|+.++.++++.++..|+++|+.+....+         .+++.|..++.++++.++..|+++|
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            4           2479999999999999999999999999854333         3567889999999999999999999


Q ss_pred             HHHh
Q psy9169         353 SNIT  356 (440)
Q Consensus       353 ~nl~  356 (440)
                      +++.
T Consensus       217 ~~~~  220 (280)
T 1oyz_A          217 SYRK  220 (280)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9986

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.64  E-value=1.9e-15  Score=161.12  Aligned_cols=316  Identities=14%  Similarity=0.108  Sum_probs=224.4

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH-H---HHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDE-L---IEAGVVPICVELLDDENPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~-i---i~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~  149 (440)
                      ..++.+++.+.++++..+..++.++..++...+ +.... .   .-..++|.|+.++.++++.+|..|+++|.++....+
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA-EILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHT-THHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhH-HHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence            457889999999999999999999998875432 11110 0   012468888888888999999999999999886644


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169         150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL  229 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l  229 (440)
                      ......+ .++++.+..++.++++.++..++++|+.++...+..-...+ .++++.++.++.+.+ ..++..+++++..+
T Consensus       207 ~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~-~~vr~~a~e~l~~l  283 (852)
T 4fdd_A          207 QALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQD-ENVALEACEFWLTL  283 (852)
T ss_dssp             HHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCc-HHHHHHHHHHHHHH
Confidence            3221111 25788899999999999999999999999976543211111 246777888877655 88999999999999


Q ss_pred             hhCCCCCCCH--HHHhhHHHHHHHhh-----------cC-----------CCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169         230 CRNKNPAPDF--EKIKICLPLLNQLI-----------HT-----------TDVETLSDICWALSYISDGHNDKIQAVVDT  285 (440)
Q Consensus       230 ~~~~~~~~~~--~~~~~~~~~L~~ll-----------~~-----------~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~  285 (440)
                      +.... ....  .....++|.+...+           .+           .+..++..+..++..++...++..   + .
T Consensus       284 ~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~---~-~  358 (852)
T 4fdd_A          284 AEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDEL---L-P  358 (852)
T ss_dssp             TTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGG---H-H
T ss_pred             hcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHH---H-H
Confidence            86541 1010  02346677777776           22           123468888899988886543221   1 2


Q ss_pred             CChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHH
Q psy9169         286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH  365 (440)
Q Consensus       286 g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~  365 (440)
                      .+++.+..++.++++.++..|+++||+++.+........+ .++++.+..++.++++.+|..|+|+|++++.....+.  
T Consensus       359 ~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--  435 (852)
T 4fdd_A          359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP--  435 (852)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC--
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch--
Confidence            3578888888999999999999999999988776544333 3588999999999999999999999999986321100  


Q ss_pred             HhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         366 VIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       366 ~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                            ...+.     .+.++.|...+.++++.|+..|..++..+..
T Consensus       436 ------~~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          436 ------PDTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             ------TTTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence                  00010     1234556666667789999999999888764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.61  E-value=3.4e-15  Score=159.15  Aligned_cols=273  Identities=16%  Similarity=0.182  Sum_probs=201.5

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .++.+++.+.++++.++..|++++..++....    ..+.  -.++++.++.++.++++.++..++++|..++...++..
T Consensus       175 il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~----~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~  250 (852)
T 4fdd_A          175 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRT----QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL  250 (852)
T ss_dssp             HHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC----HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            45667777788999999999999987764332    1111  12567888888888999999999999999997655443


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhC----------CC-------
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQ----------PN-------  213 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~----------~~-------  213 (440)
                      ...+. ++++.++.++.+.++.++..|++++..++... ..+..+.  -...++.++..+.          .+       
T Consensus       251 ~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~  328 (852)
T 4fdd_A          251 LPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG  328 (852)
T ss_dssp             GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred             HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence            32222 57888999999999999999999999998753 3333221  1234666666662          11       


Q ss_pred             ----CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChH
Q psy9169         214 ----TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP  289 (440)
Q Consensus       214 ----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~  289 (440)
                          .+-.+++.++.+|..++.....    .....++|.+..++.+.++.++..++++++.++.+..+.... .-.++++
T Consensus       329 dd~~~~~~vr~~a~~~L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~  403 (852)
T 4fdd_A          329 DDTISDWNLRKCSAAALDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIP  403 (852)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHH
Confidence                1124678888899888876421    234568888999999999999999999999999887654332 2246789


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       290 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      .++.++.++++.|+..|++++++++...........-.++++.|+..+.++++.++..|+|+|.+++.+
T Consensus       404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999863221100011125778889999888999999999999999964

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.60  E-value=1.2e-13  Score=140.62  Aligned_cols=305  Identities=12%  Similarity=0.093  Sum_probs=225.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .++.++..++++++.++..|+..+..+...-.........-..++|.+..++.++++.+|..++++|+.++..-..   .
T Consensus       282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~  358 (588)
T 1b3u_A          282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---D  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---H
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---h
Confidence            4677788888888899999998888887654322122233456788999999999999999999999999743111   1


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                      .....++|.+..++.+++++++..++.+|+.++.....   ......++|.|..++.+.+ ..++..++.++..++..-.
T Consensus       359 ~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~  434 (588)
T 1b3u_A          359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLG  434 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHcC
Confidence            12235889999999999999999999999988743221   1122346788888886655 7899999999999886431


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      +.   .....++|.+..++.+.+..++..++.+++.++......   .....++|.|..++.+++..++..++.+++.++
T Consensus       435 ~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~  508 (588)
T 1b3u_A          435 VE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             GG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence            11   112457899999999999999999999999998643321   123467899999998889999999999999997


Q ss_pred             cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC
Q psy9169         315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH  394 (440)
Q Consensus       315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~  394 (440)
                      ..-..  . ..-..+++.|..++.++++.+|..++++|+.++..-...           .    + ....++.|..+...
T Consensus       509 ~~~~~--~-~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~----~-~~~~~p~l~~l~~d  569 (588)
T 1b3u_A          509 EVCGQ--D-ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------T----L-QSEVKPILEKLTQD  569 (588)
T ss_dssp             HHHHH--H-HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------H----H-HHHHHHHHHHHTTC
T ss_pred             HhcCH--H-HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-----------h----h-HHHHHHHHHHHcCC
Confidence            53221  1 123468899999999999999999999999998642211           0    0 11235566777889


Q ss_pred             CcHHHHHHHHHHHHhhC
Q psy9169         395 ENETVYQKCYKIISMAF  411 (440)
Q Consensus       395 ~~~~v~~~a~~il~~~~  411 (440)
                      ++++|+..|..++..+-
T Consensus       570 ~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          570 QDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             SSHHHHHHHHHHHHHTT
T ss_pred             CchhHHHHHHHHHHHhh
Confidence            99999999999998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.58  E-value=1.5e-13  Score=139.86  Aligned_cols=305  Identities=11%  Similarity=0.073  Sum_probs=223.1

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH-HH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ-TM  153 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~-~~  153 (440)
                      .+|.+...+.++++.++..++.++..+....+    .......++|.++.++.++++.++..|+++|..++...+.. +.
T Consensus       243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  318 (588)
T 1b3u_A          243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVG----PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC----HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC----cccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence            45556666677777788888877777654221    12234567899999998899999999999999998653321 11


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      ...-..++|.+..++.++++.+|..++++|+.++..-.   .......++|.+..++.+.+ ..++..++.++..++...
T Consensus       319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~  394 (588)
T 1b3u_A          319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG---KDNTIEHLLPLFLAQLKDEC-PEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC---HHHHHHHTHHHHHHHHTCSC-HHHHHHHHTTCHHHHHHS
T ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHhc
Confidence            12334678999999999999999999999999983211   11122347888889888665 889999999999888654


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                      ..   ......++|.+..++.+.+..++..++.++..++..-...   .....+++.+..+|.+++..++..|+.+++.+
T Consensus       395 ~~---~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l  468 (588)
T 1b3u_A          395 GI---RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKL  468 (588)
T ss_dssp             CH---HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             CH---HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            21   1234678999999999999999999999999987432111   11224578899999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhc
Q psy9169         314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQH  393 (440)
Q Consensus       314 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~  393 (440)
                      +......   ..-..+++.|..++.++++.+|..++++++.++..-...           .+     ....++.+..++.
T Consensus       469 ~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----------~~-----~~~~~~~l~~~l~  529 (588)
T 1b3u_A          469 VEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----------IT-----TKHMLPTVLRMAG  529 (588)
T ss_dssp             HHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----------HH-----HHHTHHHHHHGGG
T ss_pred             HHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----------HH-----HHHHHHHHHhhCC
Confidence            8643221   112357888988888888999999999999997531110           01     1124667777888


Q ss_pred             CCcHHHHHHHHHHHHhhCC
Q psy9169         394 HENETVYQKCYKIISMAFN  412 (440)
Q Consensus       394 ~~~~~v~~~a~~il~~~~~  412 (440)
                      +++++|+..+.+.+..++.
T Consensus       530 d~~~~Vr~~a~~~l~~l~~  548 (588)
T 1b3u_A          530 DPVANVRFNVAKSLQKIGP  548 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHGG
T ss_pred             CCCchHHHHHHHHHHHHHH
Confidence            8899999999999888874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.57  E-value=1.5e-13  Score=121.05  Aligned_cols=188  Identities=18%  Similarity=0.182  Sum_probs=159.3

Q ss_pred             hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169         116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD  195 (440)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (440)
                      .+.++.|+.+|.++++.++..|+++|+.+..           .++++.|+.+|.++++.++..++++|+.+..       
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            3579999999999999999999999999863           2689999999999999999999999999863       


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH  275 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~  275 (440)
                          .+.++.|+.++.+.+ ..++..++++|..+..           ...++.|..++.++++.++..++++|+.+..  
T Consensus        80 ----~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             ----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                246888999997766 8899999999998853           2478999999999999999999999999853  


Q ss_pred             hhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy9169         276 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI  355 (440)
Q Consensus       276 ~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl  355 (440)
                               ...++.|..++.++++.++..|+.+|+.+..           ..+++.|..++.++++.++..|.++|.++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     2358899999999999999999999999832           23567889999999999999999999999


Q ss_pred             hcCC
Q psy9169         356 TAGN  359 (440)
Q Consensus       356 ~~~~  359 (440)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.57  E-value=9.3e-14  Score=141.67  Aligned_cols=322  Identities=14%  Similarity=0.129  Sum_probs=216.5

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.+.+.|+++++.++..|+.++.++.   . +..    ...+++.+..++.++++.+|..|++++..++..+++.. 
T Consensus        86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~-~~~----~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~-  156 (591)
T 2vgl_B           86 MAVNSFVKDCEDPNPLIRALAVRTMGCIR---V-DKI----TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV-  156 (591)
T ss_dssp             TTHHHHGGGSSSSSHHHHHHHHHHHHTCC---S-GGG----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH-
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHcCC---h-HHH----HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc-
Confidence            34566666777788888877777776542   1 111    12356778999999999999999999999988766532 


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                        .+.+.++.|..+|.++++.++..|+++|+.++.+++..+...+..+.+..|+..+...+ +-.+..++.++..++.. 
T Consensus       157 --~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~-~~~q~~il~~l~~l~~~-  232 (591)
T 2vgl_B          157 --EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT-EWGQIFILDCLSNYNPK-  232 (591)
T ss_dssp             --HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC-HHHHHHHHHHHHTSCCC-
T ss_pred             --ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC-chHHHHHHHHHHHhCCC-
Confidence              23578899999999999999999999999999876533101111234566666665554 56666777777766632 


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC---ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG---HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV  310 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~---~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L  310 (440)
                          .......+++.+..++++.++.++..|++++.++...   +++..+.+. ..+.+.|+.++. +++.++..|+.+|
T Consensus       233 ----~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l  306 (591)
T 2vgl_B          233 ----DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNI  306 (591)
T ss_dssp             ----SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHH
T ss_pred             ----ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHH
Confidence                2334577899999999999999999999999999752   333334332 345677777664 7788999999999


Q ss_pred             HHhhcCChH-----------------HH-HHHH-------Hc----CCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169         311 GNIATGNDH-----------------QT-DCVI-------QA----GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       311 ~nl~~~~~~-----------------~~-~~l~-------~~----g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                      +.++...+.                 .+ ...+       +.    .+++.|..++.+.+..++++++|+|++++...+.
T Consensus       307 ~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~  386 (591)
T 2vgl_B          307 NLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ  386 (591)
T ss_dssp             HHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh
Confidence            988752211                 10 1111       11    2456677777788899999999999999987654


Q ss_pred             HHHHHhh-------c-Cc------chHHHHHHHHcC-----cHHHHHHHhc-CCcHHHHHHHHHHHHhhCCCC
Q psy9169         362 QIDHVIQ-------E-GE------LNQMALLVEESG-----GLEKLEALQH-HENETVYQKCYKIISMAFNDS  414 (440)
Q Consensus       362 ~~~~~i~-------~-~~------~~~~~~~l~~~g-----~l~~l~~L~~-~~~~~v~~~a~~il~~~~~~~  414 (440)
                      ..+.+++       . +.      ...+..++....     ++..|...+. ...++++..+.++|..|-..-
T Consensus       387 ~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~  459 (591)
T 2vgl_B          387 SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERI  459 (591)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence            4444443       1 10      112223333322     3455544443 456788888888888885543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.55  E-value=1.6e-13  Score=119.82  Aligned_cols=184  Identities=18%  Similarity=0.204  Sum_probs=159.0

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      +..+.++++|.++++.++..|+++|+.+..           .+.++.|+.+|.++++.++..|+++|+.+...       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-------   75 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE-------   75 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence            568899999999999999999999998863           26789999999999999999999999998532       


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                          ..++.|+.++.+.+ ..++..++++|..+..           ...++.|..++.++++.++..++++|+.+..   
T Consensus        76 ----~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           76 ----RAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             ----GGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             ----HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                46888999998765 8999999999998753           2478899999999999999999999999863   


Q ss_pred             hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         277 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       277 ~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                              .+.++.|..++.++++.++..|+++|+.+.  .+         .+++.|..++.++++.++..|.++|.++.
T Consensus       137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                    245889999999999999999999999982  22         25678888999999999999999999874

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.53  E-value=3e-13  Score=133.48  Aligned_cols=278  Identities=15%  Similarity=0.189  Sum_probs=196.9

Q ss_pred             CCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCC--ChHHHHHHHHHHHHHhCCCc
Q psy9169          74 MTVPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE--NPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        74 ~~i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~--~~~i~~~a~~~L~nla~~~~  149 (440)
                      ..++.|+..+.++  ++..+..|+.++..++............ ..+++.++.++.++  ++.+|..|+++++++...-.
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4678899999988  9999999999999887533111111111 24788889999666  79999999999999865322


Q ss_pred             HHHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         150 EQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       150 ~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      .... .....-+++.+...+.++++.++..++++|..++...+..-...+..++++.++..+.+.+ ..++..+++.+..
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~a~~~l~~  285 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFWSN  285 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS-HHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHH
Confidence            2111 0111124677778888888999999999999998544321111111156777777776554 7899999999998


Q ss_pred             hhhCC------------------CCCCCHH--HHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhHHH
Q psy9169         229 LCRNK------------------NPAPDFE--KIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKIQA  281 (440)
Q Consensus       229 l~~~~------------------~~~~~~~--~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~~~  281 (440)
                      ++...                  .......  ....++|.++..+..       ++..++..++.+|..++....+.   
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---  362 (462)
T 1ibr_B          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---  362 (462)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---
T ss_pred             HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---
Confidence            88642                  1122222  236678888887753       23478999999999998654422   


Q ss_pred             HHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         282 VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       282 l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      ++ ..+++.+...+.++++.++..|+.++|.++.+.. ......+ ..+++.++.++.++++.+|..|+|+|++++..
T Consensus       363 ~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            11 2457888888999999999999999999998654 2211122 46899999999999999999999999999864

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.53  E-value=4.7e-13  Score=117.82  Aligned_cols=188  Identities=16%  Similarity=0.135  Sum_probs=157.9

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.|++.|.++++.++..|+..|..+-.            .+.++.|+.+|.++++.++..|+++|+.+..       
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            468999999999999999999999987621            2578999999988999999999999999863       


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                          .+.++.|+.+|.++++.++..++++|+.+...           ..++.|+.++.+.+ ..++..++++|..+..  
T Consensus        80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDED-WFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC--
Confidence                36789999999999999999999999998632           46888999887666 8999999999999843  


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                               ...++.|..++.+.++.++..++++|+.+..           ..+++.|..++.++++.++..|..+|+++
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     2478999999999999999999999999853           22478899999999999999999999998


Q ss_pred             hcCCh
Q psy9169         314 ATGND  318 (440)
Q Consensus       314 ~~~~~  318 (440)
                      .....
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            76544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.51  E-value=1.8e-12  Score=113.07  Aligned_cols=184  Identities=16%  Similarity=0.143  Sum_probs=158.1

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ...+.+++.|.++++.++..|+..|..+-  .          .+.++.|+.+|.++++.++..|+++|+.+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~--~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG--D----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHC--C----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcC--C----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence            45789999999999999999999998762  1          2468999999999999999999999999863       


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                          ..+++.|+.+|.++++.++..|+++|+.+...           ..++.|+.++.+.+ ..++..++++|..+..  
T Consensus        75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~--  136 (201)
T 3ltj_A           75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDED-WFVRIAAAFALGEIGD--  136 (201)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHTC--
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC--
Confidence                25789999999999999999999999998532           36888999887665 8999999999999853  


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                               ...++.|..++.+.++.++..++++|+.+..  +         .+++.|..++.++++.++..|..+|+++
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                     3478999999999999999999999999942  2         2478889999889999999999999987


Q ss_pred             h
Q psy9169         314 A  314 (440)
Q Consensus       314 ~  314 (440)
                      -
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.48  E-value=4.1e-12  Score=129.47  Aligned_cols=256  Identities=14%  Similarity=0.134  Sum_probs=196.0

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..+..+.+.|.+++...+..++.-+..+.....+.       ..+.+.+++++.+++..++..+..++.+++..+++.. 
T Consensus        13 ~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-   84 (591)
T 2vgl_B           13 GEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-   84 (591)
T ss_dssp             SHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred             ChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-
Confidence            45788999999999988888877776555433311       2357778888899999999999999999876444432 


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                          .-+++.|.+-|.++++.++..|+.+|+++.  .+....     .+++.+..++.+.+ +.+++.|++++.+++...
T Consensus        85 ----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~  152 (591)
T 2vgl_B           85 ----IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDIN  152 (591)
T ss_dssp             ----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSS
T ss_pred             ----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhC
Confidence                245788888999999999999999999996  233322     23677888887665 899999999999999864


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                       +  +.....++++.+..+|.+.|+.++..|+++|..++..+++....-+..+.+..|+..+.+.++..+...+++++.+
T Consensus       153 -p--~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l  229 (591)
T 2vgl_B          153 -A--QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY  229 (591)
T ss_dssp             -C--CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred             -h--hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence             2  2333467899999999999999999999999999976653210001123467777777778888889999999998


Q ss_pred             hcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       314 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      +..++....     .+++.+..++.+.++.++.+|+|++..+..
T Consensus       230 ~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~  268 (591)
T 2vgl_B          230 NPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLE  268 (591)
T ss_dssp             CCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred             CCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence            866554433     356778888999999999999999999874

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.45  E-value=1.8e-11  Score=130.62  Aligned_cols=317  Identities=15%  Similarity=0.160  Sum_probs=215.5

Q ss_pred             CCHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhccCC--ChHHHHHHHHHHHHHhCC
Q psy9169          74 MTVPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLDDE--NPNTQFEATWALTNIASG  147 (440)
Q Consensus        74 ~~i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~~~--~~~i~~~a~~~L~nla~~  147 (440)
                      ..++.++..+.++  ++.++..++.++..++..-. +  +.+.  -..+++.+...+.++  ++.++..|+.+|..++..
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~  204 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-P--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-H--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-H--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            4578889999988  99999999999998875321 1  1111  134677788888555  689999999999998754


Q ss_pred             CcHHHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169         148 TSEQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI  226 (440)
Q Consensus       148 ~~~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L  226 (440)
                      -..... ......+++.+...+.+++.+++..++++|..++...+..-...+...+++.++..+.+.+ ..++..+++.+
T Consensus       205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~al~~l  283 (876)
T 1qgr_A          205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFW  283 (876)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence            222111 1111236778888888888999999999999999654433223333467888888776555 78999999988


Q ss_pred             HhhhhCC------------------CCCCCHH--HHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhH
Q psy9169         227 SNLCRNK------------------NPAPDFE--KIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKI  279 (440)
Q Consensus       227 ~~l~~~~------------------~~~~~~~--~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~  279 (440)
                      ..++...                  .+.....  ....++|.++..+..       ++..++..+..++..++....+..
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~  363 (876)
T 1qgr_A          284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh
Confidence            8887541                  0112222  236778888888752       345788899999998886443221


Q ss_pred             HHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       280 ~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                         + ..+++.+...+.++++.++..|+++++.++.+.. ......+ .++++.++..+.++++.+|..|+|+|++++..
T Consensus       364 ---~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          364 ---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             ---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             ---H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence               1 2457777888888999999999999999998764 3333333 35899999999999999999999999999975


Q ss_pred             ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         359 NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       359 ~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      .+...       ....+..     ..++.|...+.++ +.|+..|..++..+..
T Consensus       439 ~~~~~-------~~~~~l~-----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          439 LPEAA-------INDVYLA-----PLLQCLIEGLSAE-PRVASNVCWAFSSLAE  479 (876)
T ss_dssp             CGGGT-------SSTTTHH-----HHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred             Cchhc-------ccHHHHH-----HHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence            33210       0000100     1133344444443 7777777777766653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.38  E-value=4.1e-12  Score=135.32  Aligned_cols=277  Identities=12%  Similarity=0.115  Sum_probs=191.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH-HH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MT  154 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~-~~  154 (440)
                      ++.+.+.+.+.++..+..|+.++..++...........+ ..+++.|+..+.++++.++..++|+|+.++..-.... ..
T Consensus       371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  449 (861)
T 2bpt_A          371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ  449 (861)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred             HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence            445556667889999999999999886432201122222 2578889999988899999999999999985321100 00


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhHHHHHhcCChHHHHhhhCCCC-cHHHHHHHHHHHHh
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-----ARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISN  228 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-----~~~r~~i~~~g~i~~L~~ll~~~~-~~~~~~~a~~~L~~  228 (440)
                      -.-..+++.|+..+.++ +.++..|+|+|.+++...     ......+  ..+++.|+.++.+.+ +..++..+++++..
T Consensus       450 ~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~  526 (861)
T 2bpt_A          450 QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence            01124678888888876 899999999999998431     1111111  235777888887533 36789999999999


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhhcCC---------------CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLIHTT---------------DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE  293 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~---------------d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~  293 (440)
                      ++.... .........++|.++..+...               ...++..++.+|..++........... ..+++.++.
T Consensus       527 l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~  604 (861)
T 2bpt_A          527 MVEYAT-DTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFR  604 (861)
T ss_dssp             HHHHCC-GGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHH
T ss_pred             HHHHcc-hhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHH
Confidence            998763 223334566777777776521               345778899999998865443222111 246788888


Q ss_pred             hccCCCh-hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169         294 LLDSEET-TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN  359 (440)
Q Consensus       294 lL~~~~~-~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~  359 (440)
                      .+.+.+. .++..++.+++.++..........+. .+++.|...+.+.++.++..++++++.++...
T Consensus       605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~  670 (861)
T 2bpt_A          605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence            8887766 89999999999998644332222333 37889999998888899999999999998643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.38  E-value=1.1e-11  Score=132.03  Aligned_cols=275  Identities=15%  Similarity=0.142  Sum_probs=193.3

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          76 VPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        76 i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ++.+...+.++  ++.++..|+.++..++..-............+++.|...+.++++.++..++.+|..++...+....
T Consensus       181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~  260 (861)
T 2bpt_A          181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK  260 (861)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666766  8999999999998875321100000001123577777777888999999999999999865444333


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-----------------hHHHHHhcCChHHHHhhhCCC---
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-----------------ARDLLLGLGTMPQILALVQPN---  213 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~-----------------~r~~i~~~g~i~~L~~ll~~~---  213 (440)
                      ..+...+++.+...+.+.+..++..|+.++..++.....                 .-... -..+++.++..+...   
T Consensus       261 ~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d  339 (861)
T 2bpt_A          261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNED  339 (861)
T ss_dssp             HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccc
Confidence            333336778888889999999999999999998854211                 10111 134678888887642   


Q ss_pred             ---CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hhHHHHHhcCChH
Q psy9169         214 ---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVP  289 (440)
Q Consensus       214 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~~g~~~  289 (440)
                         ++..++..+..+|..++....    ......+++.+...+.+.+..++..++++++.++.+.. ......+. .+++
T Consensus       340 ~~d~~~~~r~~a~~~L~~l~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~  414 (861)
T 2bpt_A          340 PEDDDWNVSMSAGACLQLFAQNCG----NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALP  414 (861)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHH
T ss_pred             cccccCcHHHHHHHHHHHHHHHcc----HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHH
Confidence               224688899999999886542    12245678888888888999999999999999997753 33333332 5789


Q ss_pred             HHHHhccCCChhHHHHHHHHHHHhhcCChHHH--HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         290 RLVELLDSEETTILTAALRTVGNIATGNDHQT--DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       290 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      .|+..+.++++.++..+++++++++..-....  ...+ ..+++.|+..+.+. +.++..|+|+|.+++.+
T Consensus       415 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          415 SILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH-PKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999985321100  0011 13577888888775 89999999999999864

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.37  E-value=4.8e-12  Score=124.80  Aligned_cols=310  Identities=14%  Similarity=0.037  Sum_probs=211.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCC--ChHHHHHHHHHHHHHhCCC-cHHHH
Q psy9169          77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE--NPNTQFEATWALTNIASGT-SEQTM  153 (440)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~--~~~i~~~a~~~L~nla~~~-~~~~~  153 (440)
                      ..++..|.++++.+ ..++.++..++.... +. .  .-.+++|.|+..+.++  ++.++..++.+|..++... ++...
T Consensus        93 ~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~-~~-~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~  167 (462)
T 1ibr_B           93 NYVLQTLGTETYRP-SSASQCVAGIACAEI-PV-N--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ  167 (462)
T ss_dssp             HHHHHHTTCCCSSS-CSHHHHHHHHHHHHG-GG-T--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred             HHHHHHhCCCCchh-hHHHHHHHHHHHHhc-cc-c--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence            44677777777767 777777777765321 10 0  0136889999999777  8999999999999998642 22111


Q ss_pred             HHHhcCCHHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         154 TVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARA-RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~-r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      ... ..+++.+..+|.++  +..++..|+++++++...-... .......-+++.+...+.+.+ ..++..++++|..++
T Consensus       168 ~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~vr~~~~~~l~~l~  245 (462)
T 1ibr_B          168 DKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIM  245 (462)
T ss_dssp             GGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHH
T ss_pred             hHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHH
Confidence            111 24788899999988  7999999999999976432110 000011113555555555444 899999999999998


Q ss_pred             hCCCCCCCHHHHh-hHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh---------------------hHHHHHhcCCh
Q psy9169         231 RNKNPAPDFEKIK-ICLPLLNQLIHTTDVETLSDICWALSYISDGHND---------------------KIQAVVDTGVV  288 (440)
Q Consensus       231 ~~~~~~~~~~~~~-~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~---------------------~~~~l~~~g~~  288 (440)
                      ........ .... .+++.+...+.+.++.++..+++.+..++.....                     .....+ ..++
T Consensus       246 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~  323 (462)
T 1ibr_B          246 SLYYQYME-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV  323 (462)
T ss_dssp             HHCGGGCT-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhcc
Confidence            75421111 1234 7788888888889999999999999888754210                     101001 2356


Q ss_pred             HHHHHhccC-------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh-
Q psy9169         289 PRLVELLDS-------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-  360 (440)
Q Consensus       289 ~~Lv~lL~~-------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~-  360 (440)
                      |.++..|..       .+..++..|+.+|+.++...+.   .++ ..+++.+...+.++++.+|..|+++|+.++.+.. 
T Consensus       324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~  399 (462)
T 1ibr_B          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP  399 (462)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCT
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcH
Confidence            777777743       2357899999999999875442   122 2467888889999999999999999999998643 


Q ss_pred             HHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         361 RQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       361 ~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                      +.+.            ..+  ...++.|..++.++++.|+..|.++|.++...
T Consensus       400 ~~~~------------~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          400 SQLK------------PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             TTTC------------TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH------------HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            2110            111  24577888888999999999999999998753

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.36  E-value=7e-11  Score=120.91  Aligned_cols=291  Identities=13%  Similarity=0.121  Sum_probs=210.9

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ......+++++.+++...+..+...+..++..+  +  +.++  -++..|.+-|.++++.++..|+++|+++..  ++..
T Consensus        69 ~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~--e~~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~  140 (618)
T 1w63_A           69 HFGQLECLKLIASQKFTDKRIGYLGAMLLLDER--Q--DVHL--LMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC  140 (618)
T ss_dssp             GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--H--HHHH--HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH
T ss_pred             cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--c--HHHH--HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH
Confidence            456788999999999999988888888775332  2  2111  257888888899999999999999999983  3322


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                           ..+++.+..+|.++++.+|..|+.+++++....|+..     .+.++.+..++.+.+ +.++..++++|..++..
T Consensus       141 -----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~  209 (618)
T 1w63_A          141 -----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCER  209 (618)
T ss_dssp             -----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCS
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHh
Confidence                 2568899999999999999999999999997656532     257788888887655 89999999999999865


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhc---------------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc-
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIH---------------TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-  296 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~---------------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~-  296 (440)
                      . +.. ......++|.++.+|.               ..++..+..++.+|+.++..+++..     ..+.+.|..++. 
T Consensus       210 ~-~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~  282 (618)
T 1w63_A          210 S-PDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATN  282 (618)
T ss_dssp             H-HHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHT
T ss_pred             C-hHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhc
Confidence            3 111 2234567777777664               2488899999999999998765432     233455555442 


Q ss_pred             -----CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCc
Q psy9169         297 -----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGE  371 (440)
Q Consensus       297 -----~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~  371 (440)
                           +.+..+...|++++..+.. .+..    .. .+++.|..++.++++.+|..|..+|..++...+..+        
T Consensus       283 ~~~~~~~~~aV~~ea~~~i~~l~~-~~~l----~~-~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~--------  348 (618)
T 1w63_A          283 TETSKNVGNAILYETVLTIMDIKS-ESGL----RV-LAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV--------  348 (618)
T ss_dssp             SCCSSTHHHHHHHHHHHHHHHSCC-CHHH----HH-HHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH--------
T ss_pred             cccccchHHHHHHHHHHHHHhcCC-CHHH----HH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH--------
Confidence                 3345788999999998744 2221    11 356788888999999999999999999986543321        


Q ss_pred             chHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         372 LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       372 ~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                              .  .....+..++.+++..|+.+|..++..+...
T Consensus       349 --------~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~  380 (618)
T 1w63_A          349 --------Q--RHRSTIVDCLKDLDVSIKRRAMELSFALVNG  380 (618)
T ss_dssp             --------G--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred             --------H--HHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence                    1  1234556666677777777777777777653

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.36  E-value=3.2e-11  Score=123.44  Aligned_cols=254  Identities=14%  Similarity=0.114  Sum_probs=192.6

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.+.+.|+++++.++..|++++.++..       ..++ ..+++.+..+|.+.++.+|..|+.++.++...+++...
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-------~~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~  178 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGS-------SEMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME  178 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-------HHHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH
Confidence            456778888889999999999999988741       1222 35688899999889999999999999999987665432


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--------------CCcHHHH
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP--------------NTPTTFL  219 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~--------------~~~~~~~  219 (440)
                           +.++.+..+|.+.++.++..|+++|+.++..++.....+  ...++.++.+|..              ..++-.+
T Consensus       179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q  251 (618)
T 1w63_A          179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQ  251 (618)
T ss_dssp             -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHH
T ss_pred             -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHH
Confidence                 678889999999999999999999999997765432222  2578888877653              2246777


Q ss_pred             HHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169         220 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH------TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE  293 (440)
Q Consensus       220 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~------~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~  293 (440)
                      ..++.+|..++... +    .....+.+.|..++.      +.+..+...+++++..+...+ ..    . ..+++.|..
T Consensus       252 ~~il~~L~~l~~~~-~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~-~l----~-~~a~~~L~~  320 (618)
T 1w63_A          252 VRILRLLRILGRND-D----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES-GL----R-VLAINILGR  320 (618)
T ss_dssp             HHHHHHHHHHTTTC-H----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH-HH----H-HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC-H----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH-HH----H-HHHHHHHHH
Confidence            88888888888653 1    223445555555543      235689999999999886532 11    1 135788999


Q ss_pred             hccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       294 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +|.++++.++..|+.+|+.++...+..    +. ...+.++.++.+++..+|+.|..+|..++..
T Consensus       321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~  380 (618)
T 1w63_A          321 FLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDLDVSIKRRAMELSFALVNG  380 (618)
T ss_dssp             HHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred             HHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence            999999999999999999998765432    22 3567888999999999999999999999864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.32  E-value=3.3e-11  Score=128.57  Aligned_cols=276  Identities=16%  Similarity=0.170  Sum_probs=196.7

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          76 VPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        76 i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ++.+...+.++  +..++..|+.++..++..-............+++.+...+.+.+++++..++.+|..++...+....
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~  253 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            44566667766  6899999999999886532100000111123677778878888899999999999999876555444


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch------------------hHHHH--HhcCChHHHHhhhCCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR------------------ARDLL--LGLGTMPQILALVQPN  213 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~------------------~r~~i--~~~g~i~~L~~ll~~~  213 (440)
                      ..+...+++.++..+.+.++.++..+++++..++.....                  .....  .-..+++.++..+...
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~  333 (876)
T 1qgr_A          254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  333 (876)
T ss_dssp             HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence            445457899999999888899999999999988743100                  00000  0123567777777532


Q ss_pred             ------CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hhHHHHHhcC
Q psy9169         214 ------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTG  286 (440)
Q Consensus       214 ------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~~g  286 (440)
                            ++..++..+..+|..++.....    .....++|.+...+.+.++.++..++++++.++.+.. +.....+ ..
T Consensus       334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~  408 (876)
T 1qgr_A          334 DENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQ  408 (876)
T ss_dssp             CSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HH
Confidence                  2357888999999988876421    2245788888888889999999999999999997754 3333322 45


Q ss_pred             ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHH--HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQT--DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +++.++..|.++++.++..|++++++++...+...  ...+ ..+++.|...+.++ +.++..|+|+|.+++..
T Consensus       409 ~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999987543211  0111 14677888888775 88999999999999853

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.31  E-value=2.3e-11  Score=125.79  Aligned_cols=215  Identities=12%  Similarity=0.091  Sum_probs=160.0

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHH-HHhhCCCCHHHHHHHHHHHHHhhCC-CchhH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF-LQLLSSPHLNLAEQATWALGNIAGD-GARAR  194 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L-~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r  194 (440)
                      .++| +++.|+++++..|..|+++|++|+. ++..+..+...|++..+ ..+|.+++.+|++.|+|+|+||+.+ ++..+
T Consensus        35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            4454 5677899999999999999999996 57888888888888765 5678889999999999999999954 57788


Q ss_pred             HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169         195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG  274 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~  274 (440)
                      +.+...|++++|..++...         ...+......... .. ......+.           .+...++++|.+|+.+
T Consensus       113 ~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~-~~-~~~~~~~~-----------~~~~~~l~lL~~L~e~  170 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSK-LL-KAQQRLVW-----------DITGSLLVLIGLLALA  170 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGG-SC-HHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhh---------HHHHhhhcccccc-cc-HHHHHHHH-----------HHHHHHHHHHHHHHhC
Confidence            8899999999999887532         2233333222111 11 11111111           2445677888889988


Q ss_pred             ChhhHHHHHhcCChHHHHHhccCC---ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHH---HHHHHhcCCChhHHHHH
Q psy9169         275 HNDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ---KMKKLLSSSRVNIVKEA  348 (440)
Q Consensus       275 ~~~~~~~l~~~g~~~~Lv~lL~~~---~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~---~L~~ll~~~~~~i~~~a  348 (440)
                      +++....+...+.++.|+.+|.+.   ..+++..|+.+|.+++..++...+.+.+.|...   .+..+..+ ....+..+
T Consensus       171 s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la  249 (684)
T 4gmo_A          171 RDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMA  249 (684)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHH
T ss_pred             CHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHH
Confidence            888888888899999999998442   357999999999999999999999888877543   33333333 44467889


Q ss_pred             HHHHHHHh
Q psy9169         349 AWTISNIT  356 (440)
Q Consensus       349 ~~~L~nl~  356 (440)
                      |++|.|+.
T Consensus       250 ~giL~Ni~  257 (684)
T 4gmo_A          250 CGVLHNVF  257 (684)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhHh
Confidence            99999985

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.15  E-value=2.3e-10  Score=126.68  Aligned_cols=274  Identities=14%  Similarity=0.138  Sum_probs=200.1

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .++.++..+.|+|++.+..|+..+.+.+..... ....-....+++.|++.|.+.++.+|..|+.+|+.++...++.  .
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~   83 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--Q   83 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--H
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--H
Confidence            478899999999999999999999887654321 1111122356888999998899999999999999998765441  1


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH-----HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR-----DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL  229 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r-----~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l  229 (440)
                      +  ..+++.|+..+.++++.+|..|+.+|+.++.......     ..-....++|.|...+.+..+..++..++.++..+
T Consensus        84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            1  2467888999999888999999999999984322210     11122357899999998544588999999999999


Q ss_pred             hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC-hhHHHHHHH
Q psy9169         230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALR  308 (440)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~-~~v~~~al~  308 (440)
                      +........ .....+++.+...+.+.++.++..++.+++.++...++.   + -..+++.++..|.+.+ ..++..++.
T Consensus       162 ~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          162 LSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence            964322111 134778889999999999999999999999999765532   1 2346788888875543 467788899


Q ss_pred             HHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169         309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN  359 (440)
Q Consensus       309 ~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~  359 (440)
                      +++.++...+......+ ..+++.+...+.+.++.+|..+++++..++...
T Consensus       237 ~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~  286 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRC  286 (1230)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHC
Confidence            99998865433211111 358899999999888999999999999998753

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.09  E-value=3.2e-08  Score=100.98  Aligned_cols=293  Identities=10%  Similarity=0.085  Sum_probs=199.3

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ......+++.+.|++...+..+...+..++..+  +  +.++  =++..+.+-|.++++.++..|+.+|+++..  ++..
T Consensus        73 s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~--L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~  144 (621)
T 2vgl_A           73 DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--S--ELIR--LINNAIKNDLASRNPTFMGLALHCIANVGS--REMA  144 (621)
T ss_dssp             CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHH--HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHH
T ss_pred             chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--c--HHHH--HHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHH
Confidence            467899999999999999998888887665322  2  2221  146777888889999999999999999964  4433


Q ss_pred             HHHHhcCCHHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         153 MTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      +     .+++.+.++|  .+.++.||..|+.++.++....|..   +...+.++.+..+|.+.+ +.++..++.++..++
T Consensus       145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~  215 (621)
T 2vgl_A          145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLA  215 (621)
T ss_dssp             H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHH
Confidence            2     4678889999  8899999999999999999755543   222478999999996555 899999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHH----HhhcCC-------------CHHHHHHHHHHHHHhccCC-hhhHHHHHhcCChHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLN----QLIHTT-------------DVETLSDICWALSYISDGH-NDKIQAVVDTGVVPRLV  292 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~----~ll~~~-------------d~~i~~~a~~~L~~l~~~~-~~~~~~l~~~g~~~~Lv  292 (440)
                      ... +.    .....+|.++    .++...             ++..+...+..+..++..+ ++....+.+  +++.++
T Consensus       216 ~~~-~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il  288 (621)
T 2vgl_A          216 QKN-PE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETIL  288 (621)
T ss_dssp             HHC-HH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHH
T ss_pred             HhC-hH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHH
Confidence            765 21    2233444444    443221             6889999999999988643 333333332  344444


Q ss_pred             Hhc---------cCCCh--hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169         293 ELL---------DSEET--TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       293 ~lL---------~~~~~--~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                      ..+         .+.+.  .|..+|++++..+.. +++...     .++..|..++.++++.+|..|..+|..++...+.
T Consensus       289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~  362 (621)
T 2vgl_A          289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS  362 (621)
T ss_dssp             HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT
T ss_pred             HhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc
Confidence            332         22233  788888888888752 332222     3567788999888999999999999999876431


Q ss_pred             HHHHHhhcCcchHHHHHHHHcCcHHHHHHHhc-CCcHHHHHHHHHHHHhhC
Q psy9169         362 QIDHVIQEGELNQMALLVEESGGLEKLEALQH-HENETVYQKCYKIISMAF  411 (440)
Q Consensus       362 ~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~-~~~~~v~~~a~~il~~~~  411 (440)
                      .              ..+.  .....+..++. +++..|+.+|..++..+.
T Consensus       363 ~--------------~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          363 H--------------EAVK--THIETVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             H--------------HHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             H--------------HHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence            0              0111  11233333334 556666666666665554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.06  E-value=1.5e-08  Score=105.10  Aligned_cols=272  Identities=12%  Similarity=0.117  Sum_probs=189.9

Q ss_pred             CCHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCC--------hHHHHHHHHHHH
Q psy9169          74 MTVPEMIEGMK---SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN--------PNTQFEATWALT  142 (440)
Q Consensus        74 ~~i~~lv~~L~---s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~--------~~i~~~a~~~L~  142 (440)
                      .++..|-+.|.   ++++.++.-|+..+..+-++..    .     .++..|...|.+++        +.++..|+..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            45666666676   6678888888888875533322    1     14677888884433        678999999999


Q ss_pred             HHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHH
Q psy9169         143 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNI  222 (440)
Q Consensus       143 nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a  222 (440)
                      .+..++..       ..+++.|..+|.+++..+++.|+.+||.+...+...       .++..|+..+.+..+..+++.+
T Consensus       463 la~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~a  528 (963)
T 4ady_A          463 LAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGL  528 (963)
T ss_dssp             HHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred             HHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHH
Confidence            98766532       135677888888877777889999999885332211       1345566655545557899999


Q ss_pred             HHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhcc--CChhhHHHHHhcCChHHHHHhc-cCC
Q psy9169         223 VWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISD--GHNDKIQAVVDTGVVPRLVELL-DSE  298 (440)
Q Consensus       223 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~--~~~~~~~~l~~~g~~~~Lv~lL-~~~  298 (440)
                      +.+|+.+..+..         ..++.++..|. +.++.++..++.+++.-..  ++...         +..|+..+ .+.
T Consensus       529 algLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~  590 (963)
T 4ady_A          529 AVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDS  590 (963)
T ss_dssp             HHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCS
T ss_pred             HHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCC
Confidence            999999887762         34566666654 5788888888887765443  34333         45455554 456


Q ss_pred             ChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHH-HhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHH
Q psy9169         299 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK-LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMAL  377 (440)
Q Consensus       299 ~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~-ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~  377 (440)
                      +..++..|+.+||.+..++++         .++.++. ++++.++.+|..|+++|+.+++|++..               
T Consensus       591 ~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---------------  646 (963)
T 4ady_A          591 NDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---------------  646 (963)
T ss_dssp             CHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH---------------
T ss_pred             cHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH---------------
Confidence            778999999999999888763         3455555 445778999999999999999987531               


Q ss_pred             HHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         378 LVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       378 ~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                           ..++.|..+.+.++..|++.|...|........
T Consensus       647 -----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             -----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence                 125567777888888888888877776665433

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.05  E-value=1.5e-09  Score=120.23  Aligned_cols=328  Identities=13%  Similarity=0.151  Sum_probs=208.0

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC----cHHHHHHhCCHHHHHHhcc-CCChHHHHHHHHHHHHHhCCCc
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHP----PIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~----~~~~ii~~g~i~~Lv~lL~-~~~~~i~~~a~~~L~nla~~~~  149 (440)
                      .++.++..+.++++.+|..|+.++..++..-...    ....-....++|.|+..+. ++++.++..|+.+|..++...+
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~  166 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG  166 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhH
Confidence            4567777778888888888888888877543311    0111223457899999996 5889999999999999984221


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169         150 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL  229 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l  229 (440)
                      ..... .-..+++.|+..|.+++..+|..|+.+|+.++...+.   .+ -...++.++..+....+..++..++.++..+
T Consensus       167 ~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l  241 (1230)
T 1u6g_C          167 GLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAI  241 (1230)
T ss_dssp             SSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH
T ss_pred             hHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            11100 1134678888888888999999999999999965432   12 2345788888876544345677788888888


Q ss_pred             hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC------------
Q psy9169         230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS------------  297 (440)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~------------  297 (440)
                      +..... .-......++|.+...+.+.+++++..+++++..++....+.....+ ..+++.++..+..            
T Consensus       242 ~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          242 SRQAGH-RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            875421 11112467899999999988999999999999988865443222222 2345555554431            


Q ss_pred             -------------------------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q psy9169         298 -------------------------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI  352 (440)
Q Consensus       298 -------------------------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L  352 (440)
                                               ....++..|+.+++.++...+.....++ ..+++.+...+.+.++.+|..+..++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l  398 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAY  398 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHH
Confidence                                     1235788999999999875543333344 35788888888878889999999988


Q ss_pred             HHHhcCChH---HHH---HHhh-cCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         353 SNITAGNSR---QID---HVIQ-EGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       353 ~nl~~~~~~---~~~---~~i~-~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      ..++.....   ...   ..-. .|........+.  ..++.+...+.++++.++..+..++..+..
T Consensus       399 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~  463 (1230)
T 1u6g_C          399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP--NIVKALHKQMKEKSVKTRQCCFNMLTELVN  463 (1230)
T ss_dssp             HHHHHHHCCC------------CCCHHHHHHHHTT--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccccCccccccccchHHHHHHHhh--HHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            877642000   000   0000 000000011111  123445555677788888777777766643

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.03  E-value=4.7e-10  Score=115.94  Aligned_cols=212  Identities=14%  Similarity=0.098  Sum_probs=137.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHH-hccCCChHHHHHHHHHHHHHhCC-CcHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE-LLDDENPNTQFEATWALTNIASG-TSEQT  152 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~-lL~~~~~~i~~~a~~~L~nla~~-~~~~~  152 (440)
                      .+.++++.|+|+++..|..|+++|.+++. +. .....+...|++..++. +|.+++.+++.+|+++|.||+.+ .++..
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-Cc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            45668889999999999999999999974 22 34677788888887655 56889999999999999999864 46778


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC----CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD----GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~----~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      ..++..|+++.|..++....        ..+......    ....+..+      ..            +..+++++|.+
T Consensus       113 ~~l~~~~il~~L~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~------~~------------~~~~~l~lL~~  166 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVL--------ETLTTSEPPFSKLLKAQQRLV------WD------------ITGSLLVLIGL  166 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHH--------HHHHCBTTBGGGSCHHHHHHH------HH------------HHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhH--------HHHhhhccccccccHHHHHHH------HH------------HHHHHHHHHHH
Confidence            88999999999999885321        122222111    00111111      00            12334455555


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc--cCCChhHH
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL--DSEETTIL  303 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL--~~~~~~v~  303 (440)
                      ||.+.+.........+.+|.|+.+|.+   ...++...++.+|..++..+.+.++.+.+.+....+..++  ...+...+
T Consensus       167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~  246 (684)
T 4gmo_A          167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRA  246 (684)
T ss_dssp             HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTH
T ss_pred             HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHH
Confidence            665442211222234566777666632   3457888888888888888888878777776443322222  22333456


Q ss_pred             HHHHHHHHHhh
Q psy9169         304 TAALRTVGNIA  314 (440)
Q Consensus       304 ~~al~~L~nl~  314 (440)
                      ..++.+|.|+.
T Consensus       247 ~la~giL~Ni~  257 (684)
T 4gmo_A          247 VMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhHh
Confidence            67788888874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.03  E-value=1.4e-08  Score=95.10  Aligned_cols=276  Identities=10%  Similarity=0.063  Sum_probs=165.1

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .+..++++++++|...+....-.+..+... ++.   .+   =++..|.+-+.++++-++-.|+++|++|...  +..+ 
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-  138 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-  138 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-
Confidence            356778899999999999888888776543 212   11   2678888899899999999999999999864  3222 


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                          .+.+.+.+.|.+.++.|+..|+.+...+....|+..     .++++.+.+++.+.+ +.++.+++.+|..++..+ 
T Consensus       139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d-  207 (355)
T 3tjz_B          139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDN-IMVQYHALGLLYHVRKND-  207 (355)
T ss_dssp             ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC-
T ss_pred             ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc-
Confidence                356778888999999999999999999998876542     368999999997666 788899999999998754 


Q ss_pred             CCCCHHHHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHhccCC-hhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169         235 PAPDFEKIKICLPLLNQLIHT---TDVETLSDICWALSYISDGH-NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV  310 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~---~d~~i~~~a~~~L~~l~~~~-~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L  310 (440)
                              ...+..++..+..   .++-.+...+..+..++..+ +.     ....+++.+...|++.++.|..+|+++|
T Consensus       208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I  274 (355)
T 3tjz_B          208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI  274 (355)
T ss_dssp             --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence                    1133334443333   25666666666666666554 22     2245688888999999999999999999


Q ss_pred             HHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH
Q psy9169         311 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA  390 (440)
Q Consensus       311 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~  390 (440)
                      ..+...+..    +. ..++..|..++.++++.+|..|...|..++...++.++.                  .-.-|++
T Consensus       275 ~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~------------------~n~~ie~  331 (355)
T 3tjz_B          275 VNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA------------------CNLDLEN  331 (355)
T ss_dssp             TC----------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------
T ss_pred             HhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH------------------HHHHHHH
Confidence            987552221    11 245677888888999999999999999998876654322                  1344788


Q ss_pred             HhcCCcHHHHHHHHHHH
Q psy9169         391 LQHHENETVYQKCYKII  407 (440)
Q Consensus       391 L~~~~~~~v~~~a~~il  407 (440)
                      ++.++|..|...|...|
T Consensus       332 li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          332 LVTDANRSIATLAITTL  348 (355)
T ss_dssp             -----------------
T ss_pred             HccCCcHhHHHHHHHHh
Confidence            88999988887776543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.01  E-value=5.4e-08  Score=99.28  Aligned_cols=267  Identities=13%  Similarity=0.176  Sum_probs=185.2

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ..++.+.+.|+++++..+-.|++++.++..       ..+++ .+++.+..+|  .+.+|.+|..|+.++..+...+++.
T Consensus       111 L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          111 LINNAIKNDLASRNPTFMGLALHCIANVGS-------REMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh
Confidence            346777888889999999999999998731       22333 4678889999  8999999999999999998765543


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHh----hhCCC-C-----------c
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA----LVQPN-T-----------P  215 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~----ll~~~-~-----------~  215 (440)
                      ..   ..+.++.+..+|.++++.++..|+.+|..++..++..   +  ...++.+++    ++... .           +
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence            22   2489999999999999999999999999999765431   1  123444443    33221 1           3


Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh---------cCCCH--HHHHHHHHHHHHhccCChhhHHHHHh
Q psy9169         216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI---------HTTDV--ETLSDICWALSYISDGHNDKIQAVVD  284 (440)
Q Consensus       216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll---------~~~d~--~i~~~a~~~L~~l~~~~~~~~~~l~~  284 (440)
                      +=.+..++..|..++...++ .......++++.++..+         ++.+.  .+.-.++.++..+.. .++...    
T Consensus       255 ~w~qi~il~ll~~~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~----  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV----  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH----
T ss_pred             chHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH----
Confidence            55666777777776643211 01111223344444322         22233  788899999998863 222222    


Q ss_pred             cCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc-CCChhHHHHHHHHHHHHhcCChHHH
Q psy9169         285 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQI  363 (440)
Q Consensus       285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~-~~~~~i~~~a~~~L~nl~~~~~~~~  363 (440)
                       .++..|..+|.++++.++..|+.+|..++...+. .. ++ ......++..+. +++..++..+.-+|..++.  ...+
T Consensus       329 -~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 -RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             -HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHH
T ss_pred             -HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhH
Confidence             3478899999989999999999999999987642 12 22 245778888888 8899999999999999974  4455


Q ss_pred             HHHhh
Q psy9169         364 DHVIQ  368 (440)
Q Consensus       364 ~~~i~  368 (440)
                      +.++.
T Consensus       403 ~~Iv~  407 (621)
T 2vgl_A          403 QQIVA  407 (621)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.96  E-value=5.3e-07  Score=73.92  Aligned_cols=188  Identities=15%  Similarity=0.214  Sum_probs=156.4

Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                      ..+..++..++.+|.+.-..++.+|+..+.+++...++..+..     +..|+-+++.+....+......+++.++.-. 
T Consensus        28 ~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-  101 (253)
T 2db0_A           28 KYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-  101 (253)
T ss_dssp             HHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-
T ss_pred             HhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC-
Confidence            3455678899999999989999999999999998877765543     5667777776666788888889999999776 


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                          ...+.+++|.+..-..-.|+.++....++|..++..++....     +++.-+..++.+++..-+..|+.+++-+.
T Consensus       102 ----Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alG  172 (253)
T 2db0_A          102 ----PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMG  172 (253)
T ss_dssp             ----HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred             ----HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence                246788999999888889999999999999999998886543     45788999999999888889999998876


Q ss_pred             cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169         315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ  362 (440)
Q Consensus       315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  362 (440)
                      .+......     ..+|.|..+|.+.+.-+|.-|.-+|.+++.-++..
T Consensus       173 en~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl  215 (253)
T 2db0_A          173 ENSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL  215 (253)
T ss_dssp             TTTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred             ccCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence            65554433     57899999999999999999999999999988763

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.91  E-value=1.8e-06  Score=70.80  Aligned_cols=216  Identities=18%  Similarity=0.238  Sum_probs=170.9

Q ss_pred             HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchh
Q psy9169         115 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARA  193 (440)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~  193 (440)
                      +..++..++.+|.++-..+|..|+.++..++..-++....+     +..|+.+++ +....+......++|.++...|+.
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            34678899999998889999999999999998877755543     455666655 455677777889999999777764


Q ss_pred             HHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q psy9169         194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD  273 (440)
Q Consensus       194 r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~  273 (440)
                      -+     +.+|.|..-..-++ +.++.+..++|..+.+.. |    .....++.-+..++.+.|..-+..++..++.+..
T Consensus       105 v~-----~vVp~lfanyrigd-~kikIn~~yaLeeIaran-P----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          105 VK-----SMIPVLFANYRIGD-EKTKINVSYALEEIAKAN-P----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HH-----HHHHHHHHHSCCCS-HHHHHHHHHHHHHHHHHC-H----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HH-----hhHHHHHHHHhcCC-ccceecHHHHHHHHHHhC-h----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            33     34677766666675 899999999999999886 2    4567788888999999998888888888888887


Q ss_pred             CChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q psy9169         274 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS  353 (440)
Q Consensus       274 ~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~  353 (440)
                      +.....     ...+|+|..+|.+.+.-|+..|..+|++++.-++.....+.      ..+.=+++.+..+++..--+|+
T Consensus       174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHH
T ss_pred             cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHH
Confidence            776553     34589999999999999999999999999999987655333      3455566677788888888888


Q ss_pred             HHhc
Q psy9169         354 NITA  357 (440)
Q Consensus       354 nl~~  357 (440)
                      .++.
T Consensus       243 rl~l  246 (253)
T 2db0_A          243 RLLL  246 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8774

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.86  E-value=2.5e-07  Score=79.11  Aligned_cols=224  Identities=14%  Similarity=0.055  Sum_probs=172.1

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCC
Q psy9169         159 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD  238 (440)
Q Consensus       159 g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~  238 (440)
                      +.+..|..+|.+.++.++..++.+|..+....+..-....-...++.++.++.+.+ ..+.-.|+.||..|..+.+  ..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vp--L~  109 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVP--MG  109 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCC--BC
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCC--CC
Confidence            57889999999999999999999999999664443344444568999999997776 8999999999999998852  44


Q ss_pred             HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-
Q psy9169         239 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-  317 (440)
Q Consensus       239 ~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-  317 (440)
                      ......+..++..++.+.++-.+..++..++.+.-.+..       .+++..+..++.+.+..++..+++++.|++..+ 
T Consensus       110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence            455677888999999999999999999999999433321       134778889999999999999999999999744 


Q ss_pred             -hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHh-cCC
Q psy9169         318 -DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ-HHE  395 (440)
Q Consensus       318 -~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~-~~~  395 (440)
                       ++...     +++.-+..++.+.++.+++.|.-+|-.+....-.+          +..   ..-.+.+.....|. ..+
T Consensus       183 D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~----------~~~---~~~~~~~~~v~~l~~~~~  244 (265)
T 3b2a_A          183 DSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE----------NVK---IELLKISRIVDGLVYREG  244 (265)
T ss_dssp             SCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS----------CCH---HHHHHHHHHHHHGGGCSS
T ss_pred             CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH----------hHH---HHHHHHHHHHHHHHHhcC
Confidence             23322     46777899999999999999999999998653110          000   01112344556677 678


Q ss_pred             cHHHHHHHHHHHHhh
Q psy9169         396 NETVYQKCYKIISMA  410 (440)
Q Consensus       396 ~~~v~~~a~~il~~~  410 (440)
                      .|.++.+|-.+.+.+
T Consensus       245 ~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          245 APIIRLKAKKVSDLI  259 (265)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH
Confidence            899999998876654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.84  E-value=3.8e-07  Score=94.73  Aligned_cols=240  Identities=13%  Similarity=0.114  Sum_probs=170.5

Q ss_pred             CHHHHHHHhcCCC--------HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhC
Q psy9169          75 TVPEMIEGMKSSN--------PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS  146 (440)
Q Consensus        75 ~i~~lv~~L~s~~--------~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~  146 (440)
                      .+..|...|.+++        +.++..|+..|.....+..++        .+++.|...|.+++..++..|+.+|+.+..
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e--------ev~e~L~~~L~dd~~~~~~~AalALGli~v  501 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI--------EVYEALKEVLYNDSATSGEAAALGMGLCML  501 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH--------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence            3555666666544        567777777777554443321        256778888866677778899999998855


Q ss_pred             CCcHHHHHHHhcCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169         147 GTSEQTMTVINANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA  225 (440)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (440)
                      ++...       .++..|+..+ .+.+..++..++.+|+.+....+.         .++.+++.|....++-++..++.+
T Consensus       502 GTgn~-------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~a  565 (963)
T 4ady_A          502 GTGKP-------EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFT  565 (963)
T ss_dssp             TCCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             ccCCH-------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence            53321       2344455543 345688999999999998866554         467778888766667788888888


Q ss_pred             HHhhhhCCCCCCCHHHHhhHHHHHHHhh-cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc-cCCChhHH
Q psy9169         226 ISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTIL  303 (440)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll-~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL-~~~~~~v~  303 (440)
                      ++--+-+...       ...++.|++.+ .+.+..++..|+.+|+.+..+.++         .++.++.+| .+.++.+|
T Consensus       566 lglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR  629 (963)
T 4ady_A          566 IALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVR  629 (963)
T ss_dssp             HHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHH
T ss_pred             HHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHH
Confidence            7755544421       23444444333 466788999999999998877653         367777755 56789999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChH
Q psy9169         304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR  361 (440)
Q Consensus       304 ~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~  361 (440)
                      ..|..+||.++.+++..       .+++.|..++.+++..|+..|+.+|+.+..++.+
T Consensus       630 ~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn  680 (963)
T 4ady_A          630 CGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE  680 (963)
T ss_dssp             HHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred             HHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence            99999999999988732       2466788888899999999999999999987544

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.77  E-value=1.2e-07  Score=84.93  Aligned_cols=187  Identities=13%  Similarity=0.131  Sum_probs=142.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      +.+.+.+.+.++..|..|+..|..++...+......+  ..+++.|...+ ++.++.++..|+.+|+.++..-...... 
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-
Confidence            4588889999999999999999999875221100001  23577788888 5999999999999999998532211111 


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC
Q psy9169         156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP  235 (440)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~  235 (440)
                      .-..++|.|+..+.+++..+++.|..+|..++...+ .      ..+++.|...+.+.+ ..++..++..|..+.....+
T Consensus        95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~-~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKN-PSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHcCC
Confidence            123579999999999999999999999999987533 2      125778888888765 89999999999996654322


Q ss_pred             C-CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169         236 A-PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG  274 (440)
Q Consensus       236 ~-~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~  274 (440)
                      . ........++|.+..++.+.+++++..|..+++.++..
T Consensus       167 ~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          167 TALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            2 33456678999999999999999999999999998843

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.73  E-value=1.3e-07  Score=88.52  Aligned_cols=245  Identities=10%  Similarity=0.095  Sum_probs=139.1

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.+.+.++++++.++-.|++.+.++...   .-.+     .+.+.+.+.|.+.+|.++..|+.+...+....++..+
T Consensus       104 Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~  175 (355)
T 3tjz_B          104 IVTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK  175 (355)
T ss_dssp             GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence            6789999999999999999999999988532   1222     2466777888999999999999999999988777432


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCC--cHHHHHHHHHHHHhhhh
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--PTTFLRNIVWAISNLCR  231 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~  231 (440)
                           +.++.+-.++.+.++-++.+|+.+|..+...+..         .+..|+..+..+.  ++-.+...+..+..++.
T Consensus       176 -----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~  241 (355)
T 3tjz_B          176 -----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE  241 (355)
T ss_dssp             -----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred             -----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence                 6899999999999999999999999999875422         2333444443321  23333334444444443


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG  311 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~  311 (440)
                      ..+    ......+++.+..+|++.++.|.-.|+.+|..+...+...    . ..++..|..+|.++++.++..|++.|.
T Consensus       242 ~d~----~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~----~-~~a~~~L~~fLss~d~niryvaLr~L~  312 (355)
T 3tjz_B          242 DED----GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE----L-APAVSVLQLFCSSPKAALRYAAVRTLN  312 (355)
T ss_dssp             -------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-
T ss_pred             ccc----hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH----H-HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence            321    1233567788888899999999999999999987633221    1 345778888898999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q psy9169         312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN  354 (440)
Q Consensus       312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~n  354 (440)
                      .++...|...+.     .-.-+.+++.+++..+...|.-+|-.
T Consensus       313 ~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          313 KVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTLLK  350 (355)
T ss_dssp             -------------------------------------------
T ss_pred             HHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHhhh
Confidence            999887765442     33557788888888877777666543

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.71  E-value=4.9e-08  Score=87.42  Aligned_cols=187  Identities=10%  Similarity=0.099  Sum_probs=141.6

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH
Q psy9169         161 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE  240 (440)
Q Consensus       161 i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  240 (440)
                      -+.+...+.+.+...|..++..|..++...+...... -..+++.|...+..+.+..++..++.++..|+..-.+ .-..
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~~~   94 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RFSN   94 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GGHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hHHH
Confidence            3457888899999999999999999885422210000 1234667777774234488999999999999976422 1233


Q ss_pred             HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hH
Q psy9169         241 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DH  319 (440)
Q Consensus       241 ~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~  319 (440)
                      ....++|.+...+.+.+..++..++.++..++....  ..     .+++.+...|.+.++.++..++.+|+.++... +.
T Consensus        95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence            567899999999999999999999999999987543  12     35788999999999999999999999976543 32


Q ss_pred             -HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         320 -QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       320 -~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                       .....+. .+++.|..++.+.++.+|..|..+++.++.
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence             1122233 578999999999999999999999999874

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.65  E-value=7.6e-07  Score=76.22  Aligned_cols=186  Identities=13%  Similarity=0.075  Sum_probs=148.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .+..+..+|+..|+.++..++.++.++++.-+ .......-..+++.++.++.+.|..+...|+.||.-+-.+.+-....
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~-~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRAD-SDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            57789999999999999999999999998643 22344444568999999999999999999999999998876654444


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                      +.  -++.+|..++.++++-+++.++..++.+.--++.       .+++..+.+++ .+.+..++..+..++.+++....
T Consensus       113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS-------KLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred             HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch-------HHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccC
Confidence            43  3578899999999999999999999999433222       23577888889 55559999999999999997653


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG  274 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~  274 (440)
                      ...   ....++.-+-.++++.|+.++.-|+.++-.+...
T Consensus       183 D~~---i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          183 DSG---HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             SCC---CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CHH---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            322   2356667778889999999999999999988865

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.65  E-value=2.1e-07  Score=83.57  Aligned_cols=191  Identities=12%  Similarity=0.150  Sum_probs=141.3

Q ss_pred             HHHhccCCChHHHHHHHHHHHH-HhCCCcHHHHHHHh-cCCHHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--chhH-H
Q psy9169         122 CVELLDDENPNTQFEATWALTN-IASGTSEQTMTVIN-ANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDG--ARAR-D  195 (440)
Q Consensus       122 Lv~lL~~~~~~i~~~a~~~L~n-la~~~~~~~~~i~~-~g~i~~L~~lL-~~~~~~v~~~a~~~L~nl~~~~--~~~r-~  195 (440)
                      +.+.+.+.++.-|.+|+..|.. +..+.+.......+ ..++..|...+ ++.+..++..|+.+|+.++.+-  +.+. .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4556678899999999999999 87543321100001 13577888888 7889999999999999999421  1222 2


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH  275 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~  275 (440)
                      ..  ..++|.++..+.+.. ..++..+..++..++..-++.........+++.|...+.+.++.++..++.+|..++...
T Consensus       101 y~--~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          101 YV--SLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HH--HHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             HH--HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            22  236889999998766 789999999999999865332211114568899999999999999999999999998655


Q ss_pred             h---hhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         276 N---DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       276 ~---~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      .   ......+...++|.|.+++.+.++.+|..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4   222333336789999999999999999999999999873

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.63  E-value=7.3e-07  Score=79.96  Aligned_cols=195  Identities=7%  Similarity=0.055  Sum_probs=141.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHH-hhCCCchhHHHHHh-cCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC-CCCCH
Q psy9169         163 KFLQLLSSPHLNLAEQATWALGN-IAGDGARARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDF  239 (440)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~n-l~~~~~~~r~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~  239 (440)
                      .+...+.+.+..-|..|+..|+. ++...+........ ..++..|...+..+.+..++..++.+|..|+.+-. +....
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            45667788999999999999999 87443322100000 13466777777545558899999999999997653 33222


Q ss_pred             HHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-
Q psy9169         240 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-  318 (440)
Q Consensus       240 ~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-  318 (440)
                      .....++|.++..+.+..+.++..+..++..++...+.....-.=..+++.|+..|.+.++.++..++.+|+.++.... 
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            4667899999999999889999998888888876432110000001257889999999999999999999999986544 


Q ss_pred             --HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         319 --HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       319 --~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                        ......+...+++.|..++.+.++.+|..|..++.-++.
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence              233334424689999999999999999999999999884

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.59  E-value=7.8e-09  Score=83.19  Aligned_cols=121  Identities=14%  Similarity=0.169  Sum_probs=93.5

Q ss_pred             hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q psy9169         116 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD  195 (440)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~  195 (440)
                      ...++.|+.+|.++++.+|..|+++|+.+..            ..++.|+.+|.++++.++..|+|+|+++...      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCH------
Confidence            4568889999999999999999999987753            1368999999999999999999999998631      


Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI  271 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l  271 (440)
                           ..++.|+.++.+.+ ..++..++|+|..+..           ...++.|..++.++++.++..++++|..|
T Consensus        73 -----~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 -----RAVEPLIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHHHCC-THHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 24788888887655 8899999999998862           34788999999999999999999998653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.58  E-value=2.7e-06  Score=81.44  Aligned_cols=268  Identities=16%  Similarity=0.170  Sum_probs=172.2

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHH--HHHHhccC-CChHHHHHHHHHHHHHhCCCcHHHHHHHhcC-
Q psy9169          84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVP--ICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINAN-  159 (440)
Q Consensus        84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~--~Lv~lL~~-~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g-  159 (440)
                      +++++..++.|+..+..+.+ ..... .... ...+.  -++..|.. ++...+.-++.+|..+... ++.|..+.+.+ 
T Consensus       135 ~~dd~~~ll~a~~l~~ll~~-~~~~~-~~~l-~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~  210 (480)
T 1ho8_A          135 KGDFQTVLISGFNVVSLLVQ-NGLHN-VKLV-EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEK  210 (480)
T ss_dssp             CSSHHHHHHHHHHHHHHHTS-TTTCC-HHHH-HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHH
T ss_pred             cccchHHHHHHHHHHHHHhc-cCCcc-HhHH-HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHccc
Confidence            34445555666666554432 22121 1111 11222  34455533 3456677889999988865 77788776543 


Q ss_pred             -CHHHHHHhhCC---------------C--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh--HHHHhhhCCCCcHHHH
Q psy9169         160 -AIPKFLQLLSS---------------P--HLNLAEQATWALGNIAGDGARARDLLLGLGTM--PQILALVQPNTPTTFL  219 (440)
Q Consensus       160 -~i~~L~~lL~~---------------~--~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i--~~L~~ll~~~~~~~~~  219 (440)
                       .++.++.++..               +  ...++.+++.+++-++.+. ...+.+...++.  +.|+.+++....+.+.
T Consensus       211 ~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvv  289 (480)
T 1ho8_A          211 KFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVS  289 (480)
T ss_dssp             HHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred             chhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhH
Confidence             36666544331               1  2567889999999999874 454556555543  6677778877779999


Q ss_pred             HHHHHHHHhhhhCCCCCC-C----HHHHhhHHHHHHHhhc---CCCHHHHHHHHHHHHHhcc------------------
Q psy9169         220 RNIVWAISNLCRNKNPAP-D----FEKIKICLPLLNQLIH---TTDVETLSDICWALSYISD------------------  273 (440)
Q Consensus       220 ~~a~~~L~~l~~~~~~~~-~----~~~~~~~~~~L~~ll~---~~d~~i~~~a~~~L~~l~~------------------  273 (440)
                      |-++.+|.|+........ .    +.....+++ ++..|.   -.|+++..+.-.....|..                  
T Consensus       290 Rv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG  368 (480)
T 1ho8_A          290 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSK  368 (480)
T ss_dssp             HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcC
Confidence            999999999997652111 1    112234444 444443   2677776665444333221                  


Q ss_pred             ---CChhhH---------HHHH--hcCChHHHHHhccC----------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy9169         274 ---GHNDKI---------QAVV--DTGVVPRLVELLDS----------EETTILTAALRTVGNIATGNDHQTDCVIQAGG  329 (440)
Q Consensus       274 ---~~~~~~---------~~l~--~~g~~~~Lv~lL~~----------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~  329 (440)
                         -++...         ..+.  +..++..|+++|.+          .++.+..-||.=||.++...|..+..+-+.|+
T Consensus       369 ~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~  448 (480)
T 1ho8_A          369 LLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGG  448 (480)
T ss_dssp             CCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSH
T ss_pred             CcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCc
Confidence               111110         1111  11467889999973          36778889999999999999999998889999


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         330 LQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       330 l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      =..++.+|.+++++|+++|..|+.-+..
T Consensus       449 K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          449 KADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.56  E-value=1.3e-08  Score=81.82  Aligned_cols=122  Identities=11%  Similarity=0.116  Sum_probs=93.8

Q ss_pred             hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCC
Q psy9169         157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA  236 (440)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~  236 (440)
                      ....++.|..+|.++++.++..|+++|+++...            .++.|+.++.+.+ ..++..++|+|.++..     
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~-~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNED-WRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSC-HHHHHHHHHHHGGGCS-----
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCC-HHHHHHHHHHHHhcCC-----
Confidence            346788999999999999999999999887432            2688899998655 8999999999999863     


Q ss_pred             CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                            ...++.|..++.+.++.++..++++|+.+..           ...++.|+.+|.++++.++..|+.+|++|
T Consensus        72 ------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 ------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             ------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                  3468899999999999999999999999862           12478999999999999999999998764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.49  E-value=2.9e-06  Score=81.20  Aligned_cols=233  Identities=12%  Similarity=0.092  Sum_probs=154.6

Q ss_pred             HHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHh--CCHHHHHHhcc---------------C--CChHHHHHHH
Q psy9169          79 MIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEA--GVVPICVELLD---------------D--ENPNTQFEAT  138 (440)
Q Consensus        79 lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~--g~i~~Lv~lL~---------------~--~~~~i~~~a~  138 (440)
                      ++..|.+ ++...+.-++.++..++...  ..+..+.+.  +.+|.++.++.               +  ...+++++++
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~--~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIP--EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSH--HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcch--hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            4444554 34566777888888777533  234455443  34677765441               1  1356789999


Q ss_pred             HHHHHHhCCCcHHHHHHHhcCCH--HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch-----hHHHHHhcCChHHHHhhh
Q psy9169         139 WALTNIASGTSEQTMTVINANAI--PKFLQLLSS-PHLNLAEQATWALGNIAGDGAR-----ARDLLLGLGTMPQILALV  210 (440)
Q Consensus       139 ~~L~nla~~~~~~~~~i~~~g~i--~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~-----~r~~i~~~g~i~~L~~ll  210 (440)
                      .|++.++.. ++..+.+...++.  +.|+..++. ..+++.+.++.+|.|+....+.     ..+.++..++ ++++..|
T Consensus       250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred             HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence            999999865 5566666666643  667777775 4599999999999999976531     2223333444 4455555


Q ss_pred             CC--CCcHHHHHHHHHHHHhh---------------------hhCCCCCCC--HHH---------HhhHHHHHHHhhcC-
Q psy9169         211 QP--NTPTTFLRNIVWAISNL---------------------CRNKNPAPD--FEK---------IKICLPLLNQLIHT-  255 (440)
Q Consensus       211 ~~--~~~~~~~~~a~~~L~~l---------------------~~~~~~~~~--~~~---------~~~~~~~L~~ll~~-  255 (440)
                      ..  -.++++....-+....|                     ....++...  +..         ...++..|+++|.+ 
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            42  23455544433322211                     122212211  111         13567888888863 


Q ss_pred             ---------CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         256 ---------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       256 ---------~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                               .|+.+..-||.=|+.++...+.....+-+.|+-..++++|.|++++|+.+|+.|+..+..
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                     478899999999999999999888888888999999999999999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.27  E-value=0.00017  Score=76.06  Aligned_cols=297  Identities=12%  Similarity=0.125  Sum_probs=202.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcH--HHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE--QTM  153 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~--~~~  153 (440)
                      +..+++.+...+...+..++..+..++......   ..+..+++..|.+.+.+..+.  +.|+.++..|+.....  ..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e   90 (986)
T 2iw3_A           16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVE   90 (986)
T ss_dssp             HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTH
T ss_pred             HHHHHhhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcc
Confidence            455666677555566677888888877643211   111136788888888554333  8899999999854321  223


Q ss_pred             -HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         154 -TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       154 -~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                       .++  +.+|.++..+.+....|+..|-.++..++..- +...     ..++|.|+..|.+...=.....++.++..|+.
T Consensus        91 ~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~  163 (986)
T 2iw3_A           91 PYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD  163 (986)
T ss_dssp             HHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             cchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence             333  68999999999888899998888887777432 3332     34589999999765546778889999999997


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC--hhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH--NDKIQAVVDTGVVPRLVELLDSEETTILTAALRT  309 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~--~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~  309 (440)
                      .. +..-.....+++|.+.+.+.+..+++...+..++..+|..-  .+.      ...+|.|++.+.+++.  ...++..
T Consensus       164 ~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~  234 (986)
T 2iw3_A          164 AA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHL  234 (986)
T ss_dssp             HS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred             Hh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHH
Confidence            64 32222345788999999999999999999999998888522  222      2458999999998843  4556666


Q ss_pred             HHHhhcCCh--HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc--CChHHHHHHhhcCcchHHHHHHHHcCcH
Q psy9169         310 VGNIATGND--HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA--GNSRQIDHVIQEGELNQMALLVEESGGL  385 (440)
Q Consensus       310 L~nl~~~~~--~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~--~~~~~~~~~i~~~~~~~~~~~l~~~g~l  385 (440)
                      |+....-..  .-+-.+    ++|.|.+-|......+++.++-++.|||.  .++..+...+.              ..+
T Consensus       235 l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~--------------~l~  296 (986)
T 2iw3_A          235 LGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG--------------KLL  296 (986)
T ss_dssp             HTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT--------------TTH
T ss_pred             hhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh--------------hhh
Confidence            665443222  111112    46888888888888899999999999996  45554444432              124


Q ss_pred             HHHHH-HhcCCcHHHHHHHHHHHHhhC
Q psy9169         386 EKLEA-LQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       386 ~~l~~-L~~~~~~~v~~~a~~il~~~~  411 (440)
                      +.++. .-...+||+++.|..+++.+.
T Consensus       297 p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          297 PGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            55555 345678998888888877774

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.03  E-value=0.00018  Score=65.65  Aligned_cols=157  Identities=13%  Similarity=0.101  Sum_probs=124.6

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .+..+++.|++++......++..|..+++.+. ....+++..+++..|+......+...+..++.+|.++..+. ....-
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~-~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~g  196 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDK-DLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLG  196 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCT-THHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcch-HHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccc
Confidence            46788899998899999999999999887555 67899999999999999998889999999999999998763 33333


Q ss_pred             HH-hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--------c--CChHHHHhhhC--CCCcHHHHHH
Q psy9169         155 VI-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--------L--GTMPQILALVQ--PNTPTTFLRN  221 (440)
Q Consensus       155 i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~--------~--g~i~~L~~ll~--~~~~~~~~~~  221 (440)
                      ++ ....|..+..++.+....|...|+..|..++..++.....+..        .  ..+..|+.+|.  +..+.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            33 5668899999999888999999999999998666543333321        1  23778889997  3345888888


Q ss_pred             HHHHHHhhhhCC
Q psy9169         222 IVWAISNLCRNK  233 (440)
Q Consensus       222 a~~~L~~l~~~~  233 (440)
                      ++..+-.+..+.
T Consensus       277 amtLIN~lL~~a  288 (339)
T 3dad_A          277 TVTLINKTLAAL  288 (339)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            888887777664

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.95  E-value=0.00033  Score=63.87  Aligned_cols=185  Identities=13%  Similarity=0.063  Sum_probs=130.9

Q ss_pred             hhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHH-hcC
Q psy9169         208 ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV-DTG  286 (440)
Q Consensus       208 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~-~~g  286 (440)
                      ..|.+++ ...++.++.-|..+...+.......+..+++..|+..+...+..++..++.++..+....+.. ..++ ...
T Consensus       125 ekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm-~gvvs~~~  202 (339)
T 3dad_A          125 EKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM-LGVVAHSD  202 (339)
T ss_dssp             HHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH-HHHHHCHH
T ss_pred             HHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc-cchhCCHH
Confidence            3344444 566888888888855443344555567888999999999999999999999999999875544 3344 456


Q ss_pred             ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc----------CCHHHHHHHhc---CCChhHHHHHHHHHH
Q psy9169         287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA----------GGLQKMKKLLS---SSRVNIVKEAAWTIS  353 (440)
Q Consensus       287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~----------g~l~~L~~ll~---~~~~~i~~~a~~~L~  353 (440)
                      .+..+..++.+....|...|+..|-.++..++.....+..+          .-++.|+.+|.   +.+..++-.|.-.|.
T Consensus       203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN  282 (339)
T 3dad_A          203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLIN  282 (339)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            78899999998888999999999999998776544433321          13778899997   567788888766665


Q ss_pred             HHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHH
Q psy9169         354 NITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQ  401 (440)
Q Consensus       354 nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~  401 (440)
                      -+..+.+++-       ....+...+++.|.-..+..++...  ++++.+
T Consensus       283 ~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          283 KTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             HHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             HHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            5555433221       0124567788888777777766655  555433

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.92  E-value=0.0032  Score=66.41  Aligned_cols=260  Identities=12%  Similarity=0.134  Sum_probs=177.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC-CcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERH-PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~-~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .+..+.+.+.+....  ..|+..+..++..... ++.+.. --+.+|.++..+.+....++..|..++..+...-+...-
T Consensus        55 ~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~  131 (986)
T 2iw3_A           55 FFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY-IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI  131 (986)
T ss_dssp             HHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             HHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc-hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            356666666654333  7788888877744321 233322 236899999999888889998888777777543222211


Q ss_pred             HHHhcCCHHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                          ..++|.|+..|.+. ....+..|+.+|..++...+.. -...-..+||.+...+.+.. .++...+..++..+|.-
T Consensus       132 ----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~  205 (986)
T 2iw3_A          132 ----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ-VALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATET  205 (986)
T ss_dssp             ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH-HHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhc
Confidence                34689999999765 4889999999999999765432 11122357788888877666 89999999999999964


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh---hhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN---DKIQAVVDTGVVPRLVELLDSEETTILTAALRT  309 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~---~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~  309 (440)
                      -+.    ..+.+.+|.|+..+.+++.  ...+...|+.-+-...   .....     ++|.|..-|......+...++-+
T Consensus       206 ~~n----~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~  274 (986)
T 2iw3_A          206 VDN----KDIERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVI  274 (986)
T ss_dssp             CCC----TTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             CCC----cchhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEE
Confidence            322    1256789999999988753  5555555555443222   11112     26777777888888899999999


Q ss_pred             HHHhhc--CChHHHHHHHHcCCHHHHHHHhcC-CChhHHHHHHHHHHHH
Q psy9169         310 VGNIAT--GNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNI  355 (440)
Q Consensus       310 L~nl~~--~~~~~~~~l~~~g~l~~L~~ll~~-~~~~i~~~a~~~L~nl  355 (440)
                      +.|+|.  .++.....++- .++|.+.+..+. .+|++|..|..++.-|
T Consensus       275 ~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l  322 (986)
T 2iw3_A          275 IDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTL  322 (986)
T ss_dssp             HHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred             EcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            999996  55555555554 578888877765 5788888877777766

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.0016  Score=58.99  Aligned_cols=191  Identities=13%  Similarity=0.099  Sum_probs=127.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHH--hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc---
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPI-DELIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTS---  149 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~-~~ii~--~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~---  149 (440)
                      +| +-+.|.|.++..|.+|+..+.+++........ +..+.  ....+.+-..+.+.|..++..++.+|..++....   
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            44 66899999999999999999998865432111 11111  2345566677789999999999999998875321   


Q ss_pred             --HHHHHHHhcCCHHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169         150 --EQTMTVINANAIPKFLQL-LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI  226 (440)
Q Consensus       150 --~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L  226 (440)
                        .......-..++|.|+.- |.+....++..+..++..++...... ..     +++.++..+.+.. +.++..++..|
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Kn-pkv~~~~l~~l  163 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKL-PKLIAAAANCV  163 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSC-HHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccC-HHHHHHHHHHH
Confidence              111122234567777764 78888999999998887776332111 11     2455666666655 78888887777


Q ss_pred             HhhhhCCC-CCCC-HHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169         227 SNLCRNKN-PAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG  274 (440)
Q Consensus       227 ~~l~~~~~-~~~~-~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~  274 (440)
                      ..+..... .... ......+++.+..++.+.|+.|+..|..++..+-..
T Consensus       164 ~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          164 YELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            77664321 1122 223456777888999999999999999999877644

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.69  E-value=0.0026  Score=68.41  Aligned_cols=262  Identities=8%  Similarity=0.071  Sum_probs=144.9

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHh-------ccCCC---hHHHHHHHHHHHHHhCCCcHHH---
Q psy9169          86 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVEL-------LDDEN---PNTQFEATWALTNIASGTSEQT---  152 (440)
Q Consensus        86 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~l-------L~~~~---~~i~~~a~~~L~nla~~~~~~~---  152 (440)
                      ++++.+..|+.++..++...........+. .++|.++.+       +...+   .+.....+.++..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888899999999987532111112221 123443332       23334   2666667777777664322111   


Q ss_pred             ---------HHHHhcCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------CchhHHHHH--hcCChHHHH
Q psy9169         153 ---------MTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGD---------GARARDLLL--GLGTMPQIL  207 (440)
Q Consensus       153 ---------~~i~~~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~---------~~~~r~~i~--~~g~i~~L~  207 (440)
                               ..+  ...++.++.+...     .++++...+++++..++..         .+.....+.  -..+++.++
T Consensus       335 ~~~~~~~~~~~l--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILV--HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHH--HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHH--HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     111  1345566665533     3577889999998887641         111111111  113455555


Q ss_pred             hhhCCCCc--------------HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC-----CCHHHHHHHHHHH
Q psy9169         208 ALVQPNTP--------------TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDVETLSDICWAL  268 (440)
Q Consensus       208 ~ll~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-----~d~~i~~~a~~~L  268 (440)
                      ..+..+++              ...++.+..+|..++... +   ......+++.+...+..     .+...+..+++++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~-~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l  488 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVL-N---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSF  488 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTC-T---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHH-h---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence            55532211              135566777777777543 1   22334445555555543     5778899999999


Q ss_pred             HHhccCChhhHHHHHhcCChHHHHHhc---c--CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChh
Q psy9169         269 SYISDGHNDKIQAVVDTGVVPRLVELL---D--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN  343 (440)
Q Consensus       269 ~~l~~~~~~~~~~l~~~g~~~~Lv~lL---~--~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~  343 (440)
                      +.++.+......     ..++.++.++   .  ++++.++..+++++|.++.--....+.+-  .+++.|+..++   +.
T Consensus       489 ~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l~---~~  558 (971)
T 2x1g_F          489 QSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGLN---SS  558 (971)
T ss_dssp             HHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHHH---SS
T ss_pred             HHHHhhcChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHhC---hH
Confidence            999977553321     2233333332   3  34788999999999998752111111111  35666777673   78


Q ss_pred             HHHHHHHHHHHHhcCChHHHH
Q psy9169         344 IVKEAAWTISNITAGNSRQID  364 (440)
Q Consensus       344 i~~~a~~~L~nl~~~~~~~~~  364 (440)
                      ++..|++++.+++......+.
T Consensus       559 v~~~A~~al~~l~~~~~~~l~  579 (971)
T 2x1g_F          559 MSAQATLGLKELCRDCQLQLK  579 (971)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999976555443

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.63  E-value=0.0013  Score=70.68  Aligned_cols=255  Identities=12%  Similarity=0.098  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc------CCChHHHHHHHHHHHHHhCCCcHHHHHHHhc----
Q psy9169          89 KMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD------DENPNTQFEATWALTNIASGTSEQTMTVINA----  158 (440)
Q Consensus        89 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~------~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~----  158 (440)
                      ..+..|...+..++...+    +.++ .-+++.+.+.+.      +.+...++.|+.+++.++.+...... ....    
T Consensus       376 s~R~aa~~~L~~l~~~~~----~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~  449 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE----VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNL  449 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH----HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTT
T ss_pred             CcHHHHHHHHHHHHHHcc----hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccC-Cccccccc
Confidence            345566666665543221    1221 113333334443      56678899999999999853110000 0000    


Q ss_pred             -CCHH----HHHHhhCCC---CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         159 -NAIP----KFLQLLSSP---HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       159 -g~i~----~L~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                       ...+    .++..|.++   ++-+|..|+|+|+.++..-+  .. . -..+++.++..|.+.+ ..++..|+++|.+++
T Consensus       450 ~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~-~-l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~  524 (960)
T 1wa5_C          450 LNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA-Q-LIELMPILATFLQTDE-YVVYTYAAITIEKIL  524 (960)
T ss_dssp             CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH-H-HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH-H-HHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHH
Confidence             1112    233334556   79999999999999986532  11 1 2346778888887554 889999999999999


Q ss_pred             hCCC------CC--C--CHHHHhhHHHHHHHhhcCCC---H--HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc
Q psy9169         231 RNKN------PA--P--DFEKIKICLPLLNQLIHTTD---V--ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL  295 (440)
Q Consensus       231 ~~~~------~~--~--~~~~~~~~~~~L~~ll~~~d---~--~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL  295 (440)
                      ....      +.  .  -......+++.|..++....   .  .....+..+|..++....+...... ..+++.|+..+
T Consensus       525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l  603 (960)
T 1wa5_C          525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIV  603 (960)
T ss_dssp             TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHH
T ss_pred             hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHH
Confidence            7532      01  1  11234567777777776641   1  1123444444444322111111111 12344444444


Q ss_pred             ----cC-CChhHHHHHHHHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         296 ----DS-EETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       296 ----~~-~~~~v~~~al~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                          .+ .++.....++.+|+.++.. .++....+ ...++|.+..++.........++...++.+.
T Consensus       604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence                23 3456777788899988875 33333323 3357788888887765666666766666655

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.47  E-value=0.0044  Score=66.59  Aligned_cols=266  Identities=9%  Similarity=0.081  Sum_probs=145.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH----H--hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI----E--AGVVPICVELLDDENPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii----~--~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~  149 (440)
                      ++.+++.+.  +++.+..|+.++..+++....+.....+    .  -+..+.+...+...+.+.....+.++..++...+
T Consensus       243 l~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~  320 (963)
T 2x19_B          243 IQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHS  320 (963)
T ss_dssp             HHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhH
Confidence            344444453  5677888999999998754322111111    1  1222333333333455555566666666653211


Q ss_pred             HHHHHHHh--------cCCHHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chhHHHHH--hcCChHHH
Q psy9169         150 EQTMTVIN--------ANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDG--------ARARDLLL--GLGTMPQI  206 (440)
Q Consensus       150 ~~~~~i~~--------~g~i~~L~~lL~~-----~~~~v~~~a~~~L~nl~~~~--------~~~r~~i~--~~g~i~~L  206 (440)
                         ..+..        ...++.++.+...     .+..+...++..+..++.+.        +..+..+.  -..+++.+
T Consensus       321 ---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l  397 (963)
T 2x19_B          321 ---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVL  397 (963)
T ss_dssp             ---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence               11110        1345566666554     24556666666666665411        11111111  01234444


Q ss_pred             HhhhCCCCcH--------------HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----cCCCHHHHHHHHHHH
Q psy9169         207 LALVQPNTPT--------------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----HTTDVETLSDICWAL  268 (440)
Q Consensus       207 ~~ll~~~~~~--------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~~~d~~i~~~a~~~L  268 (440)
                      +..+..+.+.              +.+..+..+|..++... +   ......+++.+...+    .+.+...+..+++++
T Consensus       398 l~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~-~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al  473 (963)
T 2x19_B          398 LHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML-G---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF  473 (963)
T ss_dssp             HHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-T---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred             HHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc-c---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            4444322211              22344555666655432 1   122334445555555    566788999999999


Q ss_pred             HHhccCChhhHHHHHhcCChHHHHHhc---cCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHH
Q psy9169         269 SYISDGHNDKIQAVVDTGVVPRLVELL---DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV  345 (440)
Q Consensus       269 ~~l~~~~~~~~~~l~~~g~~~~Lv~lL---~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~  345 (440)
                      +.++.+.....     ...++.++..+   ..+++.++..+++++|.++.--....+ .+ ..+++.|+..|.+  +.++
T Consensus       474 ~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~--~~V~  544 (963)
T 2x19_B          474 QSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN--PELS  544 (963)
T ss_dssp             HHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC--GGGH
T ss_pred             HHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC--chHH
Confidence            99997654321     12334444433   335678999999999998752111112 23 2688889988855  8899


Q ss_pred             HHHHHHHHHHhcCC
Q psy9169         346 KEAAWTISNITAGN  359 (440)
Q Consensus       346 ~~a~~~L~nl~~~~  359 (440)
                      ..||+++.+++...
T Consensus       545 ~~A~~al~~l~~~~  558 (963)
T 2x19_B          545 VSSVSTLKKICREC  558 (963)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999643

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.44  E-value=0.063  Score=57.66  Aligned_cols=296  Identities=11%  Similarity=0.142  Sum_probs=156.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHH-HhccCCChHHHHHHHHHHHHHhCCC---c--HHHHHHHh-
Q psy9169          85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV-ELLDDENPNTQFEATWALTNIASGT---S--EQTMTVIN-  157 (440)
Q Consensus        85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv-~lL~~~~~~i~~~a~~~L~nla~~~---~--~~~~~i~~-  157 (440)
                      +.++++...++.++...++-   .+...+++.++++.++ .+|.  +++++..|+.||+.+....   +  .....+.. 
T Consensus       206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l  280 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence            45567777788888877642   3467888899999999 8884  5789999999999998732   2  12211110 


Q ss_pred             -cCCHHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHhhhCCCCc
Q psy9169         158 -ANAIPKF--------------LQLLSSPHLNLAEQATWALGNIAG-------DGARARDLLLGLGTMPQILALVQPNTP  215 (440)
Q Consensus       158 -~g~i~~L--------------~~lL~~~~~~v~~~a~~~L~nl~~-------~~~~~r~~i~~~g~i~~L~~ll~~~~~  215 (440)
                       .+.++.+              ...-...+.+.....+.++..+..       ..+..+..+.  .++..|+.+-..+ +
T Consensus       281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~-d  357 (1023)
T 4hat_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIE-E  357 (1023)
T ss_dssp             HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSS-C
T ss_pred             HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCC-c
Confidence             0111111              111122335555555555544431       1122222211  1233444443333 3


Q ss_pred             HHHHHHHHHHHHhhhhC--CCCCCC---HHHHhhHHHHHHHhhcCCC-------------------H---HHHHHHHHHH
Q psy9169         216 TTFLRNIVWAISNLCRN--KNPAPD---FEKIKICLPLLNQLIHTTD-------------------V---ETLSDICWAL  268 (440)
Q Consensus       216 ~~~~~~a~~~L~~l~~~--~~~~~~---~~~~~~~~~~L~~ll~~~d-------------------~---~i~~~a~~~L  268 (440)
                      .++...++..=..+...  .++...   ......+++.++.-+.-++                   .   ..-...-.+|
T Consensus       358 ~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L  437 (1023)
T 4hat_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHH
Confidence            55555544332333321  111111   1223455555555543221                   0   0111111333


Q ss_pred             HHhccCC-hhhHHHHHhcCChHHHHHhccC--CChhHHHHHHHHHHHhhcCChHH-HHHHHHcCCHHHHHHHhcC-----
Q psy9169         269 SYISDGH-NDKIQAVVDTGVVPRLVELLDS--EETTILTAALRTVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSS-----  339 (440)
Q Consensus       269 ~~l~~~~-~~~~~~l~~~g~~~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~-~~~l~~~g~l~~L~~ll~~-----  339 (440)
                      .+++.-. ++..+.+     ++.+.+.+.+  .+...++.+++++|.|+.+-.+. -..++. .+++.|+.++.+     
T Consensus       438 ~~l~~l~~~~~~~~~-----~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          438 VYLTHLNVIDTEEIM-----ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHCHHHHHHHH-----HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHH
T ss_pred             HHHhccCHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCc
Confidence            3333211 1222221     3444444543  56789999999999999776543 222222 477888888864     


Q ss_pred             CChhHHHHHHHHHHHHhc---CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         340 SRVNIVKEAAWTISNITA---GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       340 ~~~~i~~~a~~~L~nl~~---~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      +...++..+||+|+.++.   ..++....+                  +..|..-+..+++.|...|++.+.++..
T Consensus       512 ~k~~v~~t~~~~lGry~~wl~~~~~~L~~v------------------l~~L~~~l~~~~~~v~~~A~~al~~l~~  569 (1023)
T 4hat_C          512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTV------------------ILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1023)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHCHHHHHHH------------------HHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHH------------------HHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            233566788999998774   233333322                  3334444556678899999888887753

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.0074  Score=54.61  Aligned_cols=186  Identities=13%  Similarity=0.118  Sum_probs=125.6

Q ss_pred             HHHhccCCChHHHHHHHHHHHHHhCCCcHHH--HH-HH-hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-----h
Q psy9169         122 CVELLDDENPNTQFEATWALTNIASGTSEQT--MT-VI-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-----R  192 (440)
Q Consensus       122 Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~--~~-i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-----~  192 (440)
                      |-+-|.+.+...|.+|+..|..+....+...  .. +. -....+.+...+.+.|..++..++.+|..++....     .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            5567788999999999999988765433211  11 11 12356677888999999999999999998874311     1


Q ss_pred             hHHHHHhcCChHHHHhh-hCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q psy9169         193 ARDLLLGLGTMPQILAL-VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI  271 (440)
Q Consensus       193 ~r~~i~~~g~i~~L~~l-l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l  271 (440)
                      .........+++.|+.- +.+.. ..++..+..++..++....+.      ..+++.+...+.+.++.++..++..|..+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~Knpkv~~~~l~~l~~~  166 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKKLPKLIAAAANCVYEL  166 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            11222234567777765 44444 778888888888777554221      23467777888999999999999998887


Q ss_pred             ccCC--hhh-HHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         272 SDGH--NDK-IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       272 ~~~~--~~~-~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      ....  ... ....+ ..+++.+..+|.+.++.||..|..+++.+..
T Consensus       167 l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          167 MAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            6421  110 11111 2356788889999999999999999998764

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=97.38  E-value=0.0057  Score=65.76  Aligned_cols=219  Identities=8%  Similarity=0.085  Sum_probs=122.7

Q ss_pred             CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHH
Q psy9169         129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQIL  207 (440)
Q Consensus       129 ~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~  207 (440)
                      .+...++.++++++.++.+-.......+. .+++.+..+.. ++++.++..++|+++.++..-......  -..+++.|+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~--l~~vl~~l~  552 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY--IPPAINLLV  552 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C--HHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHH
Confidence            56778999999999998764432211111 12332222222 347999999999999998321110011  113456666


Q ss_pred             hhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCh-hhHHHHHh
Q psy9169         208 ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHN-DKIQAVVD  284 (440)
Q Consensus       208 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~  284 (440)
                      ..+ +   +.+...|++++.++|.... ..-......++..+..++..  .+...+..+..+++.++...+ +.....++
T Consensus       553 ~~l-~---~~v~~~A~~al~~l~~~~~-~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~  627 (971)
T 2x1g_F          553 RGL-N---SSMSAQATLGLKELCRDCQ-LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD  627 (971)
T ss_dssp             HHH-H---SSCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             HHh-C---hHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            666 2   5689999999999997641 11112334566666677766  457888888889988876432 22222221


Q ss_pred             cCChHHHHH----hccCC--ChhHHHH---HHHHHHHhhcC--C-----------hHHHHHHHHcCCHHHHHHHhcCC--
Q psy9169         285 TGVVPRLVE----LLDSE--ETTILTA---ALRTVGNIATG--N-----------DHQTDCVIQAGGLQKMKKLLSSS--  340 (440)
Q Consensus       285 ~g~~~~Lv~----lL~~~--~~~v~~~---al~~L~nl~~~--~-----------~~~~~~l~~~g~l~~L~~ll~~~--  340 (440)
                       .++++++.    ++...  +.+.+..   ++..|+.+..+  .           +.....+. ..+++.+..++...  
T Consensus       628 -~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l~~~~~  705 (971)
T 2x1g_F          628 -IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM-QRTMPIFKRIAEMWVE  705 (971)
T ss_dssp             -HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH-HTTHHHHHHHHHHTTT
T ss_pred             -HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH-HHHHHHHHHHHHhccc
Confidence             23344443    33333  2222333   34444444321  1           00111122 35788888887643  


Q ss_pred             ChhHHHHHHHHHHHHhc
Q psy9169         341 RVNIVKEAAWTISNITA  357 (440)
Q Consensus       341 ~~~i~~~a~~~L~nl~~  357 (440)
                      ++.+.+.++++++.++.
T Consensus       706 ~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          706 EIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            56899999999999775

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.30  E-value=0.0074  Score=64.63  Aligned_cols=304  Identities=11%  Similarity=0.049  Sum_probs=159.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCc--HHHHHHHhcCCH
Q psy9169          84 KSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS--EQTMTVINANAI  161 (440)
Q Consensus        84 ~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~--~~~~~i~~~g~i  161 (440)
                      .+.++..+..++.++...++-   .+...+++.+.++.+..+|.+  ++++..|+.||+.+.....  +.+..++..=.+
T Consensus       203 ~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          203 NAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            347788889999999988752   356788888899999998854  8999999999999976543  222233322011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCc-----hhHHH--HHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169         162 PKFLQLLS--SPHLNLAEQATWALGNIA------GDGA-----RARDL--LLGLGTMPQILALVQPNTPTTFLRNIVWAI  226 (440)
Q Consensus       162 ~~L~~lL~--~~~~~v~~~a~~~L~nl~------~~~~-----~~r~~--i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L  226 (440)
                      ...+..+.  ..+.++.+..+..+..++      ...+     +.+..  -.-.+.++.++.++.+++ .++...++-.+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~-deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY-DETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS-HHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHH
Confidence            11122222  355565544443333222      1111     11111  112367888888888776 45555444444


Q ss_pred             HhhhhC----CC-CCCCH---HHHhhHHHHHHHhhcCC------C------H----HHHHHHHHHHHHhccCChh-hHHH
Q psy9169         227 SNLCRN----KN-PAPDF---EKIKICLPLLNQLIHTT------D------V----ETLSDICWALSYISDGHND-KIQA  281 (440)
Q Consensus       227 ~~l~~~----~~-~~~~~---~~~~~~~~~L~~ll~~~------d------~----~i~~~a~~~L~~l~~~~~~-~~~~  281 (440)
                      ..+...    .. .....   .....+++.++.-+.-+      +      .    +.+......+-.++.-.++ ....
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            433321    11 11111   12344445444444211      1      1    3444444222222222221 1111


Q ss_pred             HHhcCChHHHHHhcc---CCChhHHHHHHHHHHHhhcCChHHHHHHH-H----cCCHHHHHHHhc-----CCChhHHHHH
Q psy9169         282 VVDTGVVPRLVELLD---SEETTILTAALRTVGNIATGNDHQTDCVI-Q----AGGLQKMKKLLS-----SSRVNIVKEA  348 (440)
Q Consensus       282 l~~~g~~~~Lv~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~l~-~----~g~l~~L~~ll~-----~~~~~i~~~a  348 (440)
                      +. .-+.+.+.+.+.   +.+....+.|+.+|+.++.+-......+. +    ..+++.|..++.     .+++.++..+
T Consensus       437 ~~-~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~  515 (980)
T 3ibv_A          437 MY-SAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY  515 (980)
T ss_dssp             HH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred             HH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            11 011222323342   23467889999999999875432111000 0    014466666665     5678999999


Q ss_pred             HHHHHHHhcC---ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHH--HhcCCcHHHHHHHHHHHHhhCC
Q psy9169         349 AWTISNITAG---NSRQIDHVIQEGELNQMALLVEESGGLEKLEA--LQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       349 ~~~L~nl~~~---~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~--L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      +|+++..+.-   .++.+..++                  +.+..  -++++++.|+.+|..++.++..
T Consensus       516 ~~~l~rys~~~~~~~~~l~~~L------------------~~ll~~~gl~~~~~~V~~~a~~af~~f~~  566 (980)
T 3ibv_A          516 MEILVRYASFFDYESAAIPALI------------------EYFVGPRGIHNTNERVRPRAWYLFYRFVK  566 (980)
T ss_dssp             HHHHHHTGGGGGTCCTTHHHHH------------------HHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHH------------------HHHhccccccCCChhHHHHHHHHHHHHHH
Confidence            9999998752   333333332                  22233  3446777788888777777743

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.29  E-value=0.013  Score=62.84  Aligned_cols=221  Identities=7%  Similarity=0.065  Sum_probs=126.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCC--C-C--------cHHHHHHhCCHHHHHHhccCC---ChHHHHHHHHHHHHHhCCCcH
Q psy9169          85 SSNPKMRMIATRSARKMLSKER--H-P--------PIDELIEAGVVPICVELLDDE---NPNTQFEATWALTNIASGTSE  150 (440)
Q Consensus        85 s~~~~~~~~a~~~l~~lls~~~--~-~--------~~~~ii~~g~i~~Lv~lL~~~---~~~i~~~a~~~L~nla~~~~~  150 (440)
                      +.++..+..|+.++..++....  . +        ....++..-++|    .|.++   +|.+|..|+|+++.++..-. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~-  490 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT-  490 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence            5677888888898888764311  0 0        122222222233    33444   89999999999999986532 


Q ss_pred             HHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-------ch-hHHHHH--hcCChHHHHhhhCCCC----cH
Q psy9169         151 QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-------AR-ARDLLL--GLGTMPQILALVQPNT----PT  216 (440)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-------~~-~r~~i~--~~g~i~~L~~ll~~~~----~~  216 (440)
                       .+.  -..+++.++..|.+++..|+..|+++|.+++...       +. .+..+.  -..+++.|..++....    ..
T Consensus       491 -~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~  567 (960)
T 1wa5_C          491 -KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL  567 (960)
T ss_dssp             -HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             -HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence             122  2356888999999888999999999999998631       11 122121  1234555556665531    00


Q ss_pred             HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----c-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHH
Q psy9169         217 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----H-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL  291 (440)
Q Consensus       217 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~L  291 (440)
                      .....++.++..++........ .....+++.|...+    . .+++.....++.+|+.++.........-+...++|.+
T Consensus       568 ~~~e~l~~al~~vv~~~~~~~~-p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~  646 (960)
T 1wa5_C          568 AENEFLMRSIFRVLQTSEDSIQ-PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTF  646 (960)
T ss_dssp             TSCHHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            1223455555555432211111 12334555555444    2 2466777788999988886522112233344567888


Q ss_pred             HHhccCCChhHHHHHHHHHHHhh
Q psy9169         292 VELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       292 v~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      ...|.....++...++.+++.+.
T Consensus       647 ~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          647 LTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHhhhHhhHHHHHHHHHHHH
Confidence            88777665556666666655554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.26  E-value=0.005  Score=56.05  Aligned_cols=202  Identities=13%  Similarity=0.112  Sum_probs=138.8

Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHHh-cCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR----ARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAIS  227 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~----~r~~i~~-~g~i~~L~~ll~~~~~~~~~~~a~~~L~  227 (440)
                      ..+...+.+..|+..|..=+-+.+..+..++.++......    .-+.+.. ..++..|+....   ++++.-.+-..|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence            3455668899999999888888999999999998865432    2233332 223333333332   2344444444555


Q ss_pred             hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhccCCChhHHH
Q psy9169         228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLDSEETTILT  304 (440)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~~~~~~v~~  304 (440)
                      ...++. .........+.+-.+.+.+..++-++..+|..++..+..........++..   .+......+|.+++.-.+.
T Consensus       149 ecir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          149 ECIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            555443 222222334455566777888899999999999988876655554555543   3567788899999999999


Q ss_pred             HHHHHHHHhhcCCh--H-HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         305 AALRTVGNIATGND--H-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       305 ~al~~L~nl~~~~~--~-~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      .++..||.|.....  . .+..+-+..-+..++.+|.+....++-+|..+.--.+++
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            99999999987533  2 233344445789999999999999999999999888875

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.23  E-value=0.044  Score=49.86  Aligned_cols=296  Identities=13%  Similarity=0.169  Sum_probs=172.4

Q ss_pred             HHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhC-CCCHHHH
Q psy9169          98 ARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLA  176 (440)
Q Consensus        98 l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~-~~~~~v~  176 (440)
                      +.+++-.++ ..++-+++.+++..+...+.-++.++....+..|...+...+-+...+  ...+|.++..+. +++.++.
T Consensus       266 LL~LLmHdS-nAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvv  342 (619)
T 3c2g_A          266 LLGLLLHDS-DAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVI  342 (619)
T ss_dssp             HHHHHCCSH-HHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHhccc-ccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceE
Confidence            345655554 458899999999999999988999999999999998875422211111  256788888776 5778999


Q ss_pred             HHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc-------------HHHHHHHHHHHHhhhhC-C---C-CCC-
Q psy9169         177 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP-------------TTFLRNIVWAISNLCRN-K---N-PAP-  237 (440)
Q Consensus       177 ~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~-------------~~~~~~a~~~L~~l~~~-~---~-~~~-  237 (440)
                      ....+.|+|...+....++..+..|+|+.|...+.....             -++..+++.++.|+..- -   + ... 
T Consensus       343 YSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~  422 (619)
T 3c2g_A          343 YSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKT  422 (619)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCC
T ss_pred             EecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCcccc
Confidence            999999999999988999999999999999888763321             24455566666665531 1   0 000 


Q ss_pred             ----CHHHH-----hhHHHHHHHhhcCCC------HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCC-Chh
Q psy9169         238 ----DFEKI-----KICLPLLNQLIHTTD------VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETT  301 (440)
Q Consensus       238 ----~~~~~-----~~~~~~L~~ll~~~d------~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~-~~~  301 (440)
                          +...+     -+++..|..+|+.+.      -++++..+..+.-+...+.--      ..+   ++....+. ...
T Consensus       423 ~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~P------kd~---~l~VtDd~rk~N  493 (619)
T 3c2g_A          423 AGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVP------KDG---VLNVIDENRKEN  493 (619)
T ss_dssp             CCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSC------CTT---GGGCCCTTTCCC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCc------hhh---hccccchhhhhh
Confidence                11111     245666677765432      255666666655555433211      010   11111111 122


Q ss_pred             HHHHHH----HHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHH---HHhcC---ChHHHHHHhhc
Q psy9169         302 ILTAAL----RTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTIS---NITAG---NSRQIDHVIQE  369 (440)
Q Consensus       302 v~~~al----~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~---nl~~~---~~~~~~~~i~~  369 (440)
                      +....+    |+.|.=... ..+..+.+++ ..+..|+.+++.- ++.-.....+.++   |+..+   .+..+-.++. 
T Consensus       494 LvGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~nQ~KP~FI~NVL~-  571 (619)
T 3c2g_A          494 LIGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNGNQVKPTFIHNVLV-  571 (619)
T ss_dssp             HHHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSSCCCCHHHHHHHHH-
T ss_pred             hHHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcccccChHHHHHHHH-
Confidence            333333    443322111 1223444555 4677777777643 3322222222221   33333   2333322221 


Q ss_pred             CcchHHHHHHHHcCc--------HHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         370 GELNQMALLVEESGG--------LEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       370 ~~~~~~~~~l~~~g~--------l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                          ..-+.++.+-.        -..++.+.+|.|++|.+.|..++.+|=
T Consensus       572 ----VcDKILeHcP~~Ad~W~i~r~tle~l~NHsNsDIa~aasSLL~rfP  617 (619)
T 3c2g_A          572 ----VCDKILEHCPTRADIWTIDRPMLEGLTNHRNSDIAKAANSLLSRFP  617 (619)
T ss_dssp             ----HHHHHHHHCTTHHHHSCCCHHHHHHHHTCSSHHHHHHHHHHHTTSC
T ss_pred             ----HHHHHHHhCcchhccceechHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence                11233443332        356888999999999999999998873

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.21  E-value=0.17  Score=54.81  Aligned_cols=298  Identities=11%  Similarity=0.124  Sum_probs=159.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCC--cH---HHHHHHh--
Q psy9169          85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT--SE---QTMTVIN--  157 (440)
Q Consensus        85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~--~~---~~~~i~~--  157 (440)
                      +.+..++..++.++...++-   .+...+.+..+++.+.+.+. .+++++..|+.+|..+....  +.   ....+..  
T Consensus       206 ~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~  281 (1049)
T 3m1i_C          206 GSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFF  281 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Confidence            34577888888888877642   22455666777887774332 37899999999999998652  11   1111110  


Q ss_pred             cCCHHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHhhhCCCCcH
Q psy9169         158 ANAIPKFLQ-LL-------------SSPHLNLAEQATWALGNIAG-------DGARARDLLLGLGTMPQILALVQPNTPT  216 (440)
Q Consensus       158 ~g~i~~L~~-lL-------------~~~~~~v~~~a~~~L~nl~~-------~~~~~r~~i~~~g~i~~L~~ll~~~~~~  216 (440)
                      .+++..+.. ++             .+.+.+.....+..+..+..       ..+..+..+  ..+++.++.+.... +.
T Consensus       282 ~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~-d~  358 (1049)
T 3m1i_C          282 QNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIE-ER  358 (1049)
T ss_dssp             HHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSS-CH
T ss_pred             HHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCC-cH
Confidence            122222222 11             12234444444444433321       111122221  23566666666555 36


Q ss_pred             HHHHHHHHHHHhhhh----CCCCCC-CHHHHhhHHHHHHHhhcCC-------------------CH---HHHHHHHHHHH
Q psy9169         217 TFLRNIVWAISNLCR----NKNPAP-DFEKIKICLPLLNQLIHTT-------------------DV---ETLSDICWALS  269 (440)
Q Consensus       217 ~~~~~a~~~L~~l~~----~~~~~~-~~~~~~~~~~~L~~ll~~~-------------------d~---~i~~~a~~~L~  269 (440)
                      ++...++.....++.    .+.... -......+++.++..+..+                   |.   .....+..+|.
T Consensus       359 ~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~  438 (1049)
T 3m1i_C          359 ELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLV  438 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHH
Confidence            777777766666665    321111 1123456666666655221                   11   12334555565


Q ss_pred             HhccCChhhHHHHHhcCChHHHHHhcc--CCChhHHHHHHHHHHHhhcCChHHH-HHHHHcCCHHHHHHHhcC-----CC
Q psy9169         270 YISDGHNDKIQAVVDTGVVPRLVELLD--SEETTILTAALRTVGNIATGNDHQT-DCVIQAGGLQKMKKLLSS-----SR  341 (440)
Q Consensus       270 ~l~~~~~~~~~~l~~~g~~~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~-~~l~~~g~l~~L~~ll~~-----~~  341 (440)
                      .++.......-..    +.+.+-..+.  +.+...+..|++++|.++.+-.... ..++. .+++.|..+...     ++
T Consensus       439 ~l~~~~~~~~l~~----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~  513 (1049)
T 3m1i_C          439 YLTHLNVIDTEEI----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNK  513 (1049)
T ss_dssp             HHHHHCHHHHHHH----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHH
T ss_pred             HHHccCHHHHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccch
Confidence            5553322211111    1344444454  3567789999999999986543321 12121 245555554432     23


Q ss_pred             hhHHHHHHHHHHHHhcC---ChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         342 VNIVKEAAWTISNITAG---NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       342 ~~i~~~a~~~L~nl~~~---~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      +.++..+||+++.++.-   .++....+                  ++.|...++++++.|+..|+.++.++..
T Consensus       514 ~~v~~~~~~~lgry~~~~~~~~~~l~~v------------------l~~ll~~l~~~~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          514 AVVASDIMYVVGQYPRFLKAHWNFLRTV------------------ILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHHHH------------------HHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHH------------------HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            45565799999987632   22222222                  3445555677889999999999988865

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=97.20  E-value=0.019  Score=61.54  Aligned_cols=218  Identities=12%  Similarity=0.167  Sum_probs=132.1

Q ss_pred             cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCCh
Q psy9169         127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL---SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM  203 (440)
Q Consensus       127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i  203 (440)
                      .+.+...+..++++++.++.+-....     ...++.++..+   .++++.++..++|+++.++..-... .. .-..++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-~~-~l~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH-PV-MINSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-HH-HHTTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-HH-HHHHHH
Confidence            45577889999999999997643211     12333444433   3357889999999999998431111 11 234688


Q ss_pred             HHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCh-hhHH
Q psy9169         204 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHN-DKIQ  280 (440)
Q Consensus       204 ~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~-~~~~  280 (440)
                      +.|+..+.+   +.++..|++++.++|...... -......+++.+..++..  -+...+..+..+++.++...+ +...
T Consensus       532 ~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          532 PLVLHALGN---PELSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHTTC---GGGHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHhCC---chHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            888888854   678999999999999754211 112345666777777765  356888888999999886543 3333


Q ss_pred             HHHhcCChHHHHHhc----cCC-ChhHHH---HHHHHHHHhhcCC----h------------------HHHHHHHHcCCH
Q psy9169         281 AVVDTGVVPRLVELL----DSE-ETTILT---AALRTVGNIATGN----D------------------HQTDCVIQAGGL  330 (440)
Q Consensus       281 ~l~~~g~~~~Lv~lL----~~~-~~~v~~---~al~~L~nl~~~~----~------------------~~~~~l~~~g~l  330 (440)
                      ..+ ..+++.+...+    ..+ +++.+.   ..+.+|+.+..+-    +                  .....+. ..+.
T Consensus       608 ~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  685 (963)
T 2x19_B          608 KNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL-QQVF  685 (963)
T ss_dssp             HHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH-HHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH-HHHH
Confidence            322 23444444443    222 333333   4555555554311    0                  1111122 2356


Q ss_pred             HHHHHHhcC--CChhHHHHHHHHHHHHhc
Q psy9169         331 QKMKKLLSS--SRVNIVKEAAWTISNITA  357 (440)
Q Consensus       331 ~~L~~ll~~--~~~~i~~~a~~~L~nl~~  357 (440)
                      +.+..++..  .++.+.+.+|.++..++.
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~  714 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK  714 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence            666666643  356889999999998764

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.14  E-value=0.0023  Score=62.00  Aligned_cols=243  Identities=13%  Similarity=0.090  Sum_probs=155.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHHhCCHHHHHHhc---cC----CC---hHHHHHHHHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPP-IDELIEAGVVPICVELL---DD----EN---PNTQFEATWALTN  143 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~-~~~ii~~g~i~~Lv~lL---~~----~~---~~i~~~a~~~L~n  143 (440)
                      ..+.|+..|-++.+++|--|+..||.++....... +..-....+.-+|+..|   +-    ++   ..||+.|+.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            67889999999999999999999999987543100 00000114455555555   11    11   2589999999999


Q ss_pred             HhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHH
Q psy9169         144 IASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV  223 (440)
Q Consensus       144 la~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~  223 (440)
                      + ..-+..      ..++..|+..+..+..+++--++-.|.-+.   +...+   -.++++.++..|.+.+ ..++..|+
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL~D~D-DDVRAVAA  320 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLLSSPD-EDIKLLSA  320 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHTTCSS-HHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhcCCcc-cHHHHHHH
Confidence            8 554432      345555555567778999998888888771   11111   1345777777777766 79999999


Q ss_pred             HHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCC--HHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChh
Q psy9169         224 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD--VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT  301 (440)
Q Consensus       224 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d--~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~  301 (440)
                      .+|.-++ .  +    .....++..+..+|.+-|  ..-.......|+.|+..+...   -.+...+|+|..+|.|+-++
T Consensus       321 etLiPIA-~--p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITS  390 (800)
T 3oc3_A          321 ELLCHFP-I--T----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPE  390 (800)
T ss_dssp             HHHTTSC-C--S----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHH
T ss_pred             HHhhhhc-c--h----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHH
Confidence            9999988 1  1    124566777777775432  122334445555555443311   12237899999999999999


Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHH-HHhcCCChhHHHHHHHHH
Q psy9169         302 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMK-KLLSSSRVNIVKEAAWTI  352 (440)
Q Consensus       302 v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~-~ll~~~~~~i~~~a~~~L  352 (440)
                      ||..++.++..+.  ..         .++..+. ++|-.++++++..+..+-
T Consensus       391 VR~AVL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          391 VRTSILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             HHHHHHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            9999999998877  11         1222232 355556677766554443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.13  E-value=0.012  Score=52.32  Aligned_cols=179  Identities=13%  Similarity=0.099  Sum_probs=115.0

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---CCCcHHHHHHHHHHHHhhhh---CCCCC
Q psy9169         163 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNTPTTFLRNIVWAISNLCR---NKNPA  236 (440)
Q Consensus       163 ~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---~~~~~~~~~~a~~~L~~l~~---~~~~~  236 (440)
                      .+...|.+.+..-+..++..|.......+   +.++  ..++.++.-+.   .+++..+...++.+|..+..   ..+..
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            34444555555555555555555443222   1121  11222222111   12346777777777766542   22233


Q ss_pred             CCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcC
Q psy9169         237 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG  316 (440)
Q Consensus       237 ~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~  316 (440)
                      .......-++|.|+.-+.+..+.++..+-.++..++...+.       ..+++.+++-+.+.+...+..++..++.+...
T Consensus       125 ~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            34444577899999999999988988888777666642221       12477888889999999999999999998752


Q ss_pred             ChHHHHHHHHcCCH---HHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         317 NDHQTDCVIQAGGL---QKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       317 ~~~~~~~l~~~g~l---~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      ....     ....+   +.+..++.+++..+|..|.-++..+-..
T Consensus       198 ~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          198 AGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             HCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            2211     23468   9999999999999999999999877653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.09  E-value=0.02  Score=50.97  Aligned_cols=178  Identities=8%  Similarity=0.026  Sum_probs=111.1

Q ss_pred             HHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhh----CCCchhHHHHH
Q psy9169         123 VELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA----GDGARARDLLL  198 (440)
Q Consensus       123 v~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~----~~~~~~r~~i~  198 (440)
                      ...|.+.+..-+..++..|......+++.....++. +++.+.--+.+.+..+...++.+|..+.    ..+....+.-.
T Consensus        52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea  130 (266)
T 2of3_A           52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV  130 (266)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            334444455556666666665543323211111111 2232332334667778777777776664    22222212111


Q ss_pred             hcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhh
Q psy9169         199 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK  278 (440)
Q Consensus       199 ~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~  278 (440)
                       .-++|.|+.-+-+.. ..++..+-.++..++.-. +      ...+++.+...+.+.+...+..++..+.++.....-.
T Consensus       131 -~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~-~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~  201 (266)
T 2of3_A          131 -SAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVV-G------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS  201 (266)
T ss_dssp             -HHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHH-C------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred             -HHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHC-C------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence             236899998887666 677777776666665432 1      2457888888999999999999999999987432211


Q ss_pred             HHHHHhcCCh---HHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         279 IQAVVDTGVV---PRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       279 ~~~l~~~g~~---~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                           ....+   +.+..++.+++..|+..|+.++..+-.
T Consensus       202 -----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          202 -----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             -----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             -----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence                 13468   999999999999999999999986643

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.05  E-value=0.13  Score=46.96  Aligned_cols=202  Identities=11%  Similarity=0.095  Sum_probs=133.5

Q ss_pred             HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHH--HH---hhHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy9169         195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE--KI---KICLPLLNQLIHTTDVETLSDICWALS  269 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~---~~~~~~L~~ll~~~d~~i~~~a~~~L~  269 (440)
                      ..+...+.+..|+..|..=+ -+.++.++.++.++.+.........  ..   ..++..|+..-.  ++++...+-..|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHH
Confidence            33455677888888776655 7889999999999998763222111  22   233444444333  3344444444444


Q ss_pred             HhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcC---CHHHHHHHhcCCChhHHH
Q psy9169         270 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GLQKMKKLLSSSRVNIVK  346 (440)
Q Consensus       270 ~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---~l~~L~~ll~~~~~~i~~  346 (440)
                      .+.. .+.....++..+.+..+.+.+..++-++...|..++..+.+.....+...+..+   +...+..++.++++-+++
T Consensus       149 ecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          149 ECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            4444 445567788888999999999999999999999999999988776666666644   577788899999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169         347 EAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA  410 (440)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  410 (440)
                      .+...|+.|.-.....          ..+...+.+..-+..+..|+.++...|+--|..+..-|
T Consensus       228 QSlKLLgelLldr~N~----------~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvF  281 (341)
T 1upk_A          228 QSLKLLGELLLDRHNF----------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF  281 (341)
T ss_dssp             HHHHHHHHHHHSGGGH----------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchHH----------HHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeee
Confidence            9999999998653221          11222333333344555566666666655555554433

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.92  E-value=0.0064  Score=59.02  Aligned_cols=244  Identities=14%  Similarity=0.105  Sum_probs=157.7

Q ss_pred             CHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH--HHHHHhcCCHHHHHHhhC---------CCC-HHHHHHHHHHHHH
Q psy9169         118 VVPICVELLDDENPNTQFEATWALTNIASGTSEQ--TMTVINANAIPKFLQLLS---------SPH-LNLAEQATWALGN  185 (440)
Q Consensus       118 ~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~--~~~i~~~g~i~~L~~lL~---------~~~-~~v~~~a~~~L~n  185 (440)
                      +...|+.-|-++..++|.-|+.+|..+.......  +..-.+..+.-.|+.+|.         +.. ..|||.|+.+||.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            4556777778899999999999999986432211  000011122333333331         111 5799999999999


Q ss_pred             hhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHH
Q psy9169         186 IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDIC  265 (440)
Q Consensus       186 l~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~  265 (440)
                      + ..-+.-      ..++..|+..+.... =+++..++-.|.++..--   ..   ..++++.++..|.+.|.+|+..|+
T Consensus       255 L-~hLp~e------~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL~DLL---~~---Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          255 I-YPLIGP------NDIIEQLVGFLDSGD-WQVQFSGLIALGYLKEFV---ED---KDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             H-TTTSCS------CCHHHHHTTGGGCSC-HHHHHHHHHHHHHTGGGC---CC---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             H-HhCChh------HHHHHHHHhhcCCCC-eeehhhhHHHHHHHHHHH---HH---HHHHHHHHHhhcCCcccHHHHHHH
Confidence            9 554432      344555554444433 577777888888882211   11   677899999999999999999999


Q ss_pred             HHHHHhccCChhhHHHHHhcCChHHHHHhccCCC--hhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChh
Q psy9169         266 WALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN  343 (440)
Q Consensus       266 ~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~--~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~  343 (440)
                      .+|.-++  .++....     ++..+-..|.+.+  ..-....+..|+.|+.....   .-.+...+|.|...+.|+-+.
T Consensus       321 etLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITS  390 (800)
T 3oc3_A          321 ELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPE  390 (800)
T ss_dssp             HHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHH
T ss_pred             HHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHH
Confidence            9999999  2333333     2455555554432  12345566777777764431   111236899999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy9169         344 IVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS  408 (440)
Q Consensus       344 i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~  408 (440)
                      ||..+..+|..+.  ....             ...        ..++++-.++++|.+.+.++..
T Consensus       391 VR~AVL~TL~tfL--~~~~-------------LRL--------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          391 VRTSILNMVKNLS--EESI-------------DFL--------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHTTTCC--CHHH-------------HHH--------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--hhhH-------------HHH--------HHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999998876  1111             111        1355677889999999999886

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=96.81  E-value=0.081  Score=57.30  Aligned_cols=152  Identities=13%  Similarity=0.212  Sum_probs=92.8

Q ss_pred             HHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC---CcHHHHH-HHHHHHHhhhhCCC
Q psy9169         161 IPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN---TPTTFLR-NIVWAISNLCRNKN  234 (440)
Q Consensus       161 i~~L~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~---~~~~~~~-~a~~~L~~l~~~~~  234 (440)
                      .+.+-..+.+  .+...++.++++++.+++........-.-..+++.|..+....   ++..+++ .++|+++..+..-.
T Consensus       453 ~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~  532 (1049)
T 3m1i_C          453 ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK  532 (1049)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence            3445555543  5688899999999999865332211111122444555543321   1233333 68999998886531


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh----------cCChHHHHHhccCCChhHHH
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD----------TGVVPRLVELLDSEETTILT  304 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~----------~g~~~~Lv~lL~~~~~~v~~  304 (440)
                      .  .......+++.++..+.+.++.++..||+++.+++....   ..+..          ..++..+..++...+..-..
T Consensus       533 ~--~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~---~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~  607 (1049)
T 3m1i_C          533 A--HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVH  607 (1049)
T ss_dssp             H--CHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHH
T ss_pred             h--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence            1  234567888888889988899999999999999997432   22220          12334444455544444556


Q ss_pred             HHHHHHHHhhcCC
Q psy9169         305 AALRTVGNIATGN  317 (440)
Q Consensus       305 ~al~~L~nl~~~~  317 (440)
                      ....+++.++...
T Consensus       608 ~~~eai~~ii~~~  620 (1049)
T 3m1i_C          608 TFYKACGIIISEE  620 (1049)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcC
Confidence            6777888876543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.76  E-value=0.077  Score=46.26  Aligned_cols=196  Identities=15%  Similarity=0.196  Sum_probs=130.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-H-hCCHHHHHHhc-------cCCC--hH---HHHHHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELI-E-AGVVPICVELL-------DDEN--PN---TQFEATWAL  141 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii-~-~g~i~~Lv~lL-------~~~~--~~---i~~~a~~~L  141 (440)
                      +..++..|.+  ++.+..|+..|.+-  ++.-+....++ . -|.+..|++=+       ..+.  +.   -...|+..|
T Consensus         5 i~qli~~L~~--p~~Re~AL~eLsk~--Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl   80 (268)
T 2fv2_A            5 IYQWINELSS--PETRENALLELSKK--RESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL   80 (268)
T ss_dssp             HHHHHHHTSS--TTTHHHHHHHHHHH--TTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--chhHHHHHHHHHHh--hhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence            4455555553  45688888888764  33323333333 3 37777665433       1111  11   123455555


Q ss_pred             HHHhCCCcHHHHHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhh-CCCchhHHHHHhcCChHHHHhhhCCCCc
Q psy9169         142 TNIASGTSEQTMTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTP  215 (440)
Q Consensus       142 ~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~-~~~~~~r~~i~~~g~i~~L~~ll~~~~~  215 (440)
                      ..+|+ +++.+..++++++.-.|-.+|...+     +.+|-.+++++|.+. .++++.-..++..+++|..++.++.++ 
T Consensus        81 QcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~Gs-  158 (268)
T 2fv2_A           81 QCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGS-  158 (268)
T ss_dssp             HHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSC-
T ss_pred             HHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhcc-
Confidence            66675 5888999999999888888887544     678899999999998 455777788889999999999999888 


Q ss_pred             HHHHHHHHHHHHhhhhCCC-------CCCCHHHHhhHHHHHHH-hhcCCCHHHHHHHHHHHHHhccCChh
Q psy9169         216 TTFLRNIVWAISNLCRNKN-------PAPDFEKIKICLPLLNQ-LIHTTDVETLSDICWALSYISDGHND  277 (440)
Q Consensus       216 ~~~~~~a~~~L~~l~~~~~-------~~~~~~~~~~~~~~L~~-ll~~~d~~i~~~a~~~L~~l~~~~~~  277 (440)
                      +--+.-|+..+..+..++.       ....+..+..++..++. +....++.+...++++-..|+++...
T Consensus       159 elSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          159 ELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            5566677776666654431       01123334445544443 44567889999999999999987653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=96.75  E-value=0.0046  Score=66.40  Aligned_cols=143  Identities=12%  Similarity=0.191  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCC--C--CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHH
Q psy9169         171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP--N--TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL  246 (440)
Q Consensus       171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~--~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~  246 (440)
                      .+...++.++|++|.|++.-......-.-..+++.|+.++.+  +  ....++..++|+++..++.-.  ........++
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~--~~~~~L~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLK--AHWNFLRTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHH--HCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence            468999999999999996543321222223467888887753  1  113344577899999887642  1234467778


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh----------cCChHHHHHhccCCChhHHHHHHHHHHHhhcC
Q psy9169         247 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD----------TGVVPRLVELLDSEETTILTAALRTVGNIATG  316 (440)
Q Consensus       247 ~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~----------~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~  316 (440)
                      ..|+..+..+++.+...||+++.++|..-.   ..+..          ..++..+...+..-+..-...+..+++.++..
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c~---~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHH---HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            888888877889999999999999996422   23321          11233333434444566677888899999875


Q ss_pred             Ch
Q psy9169         317 ND  318 (440)
Q Consensus       317 ~~  318 (440)
                      .+
T Consensus       620 ~~  621 (1023)
T 4hat_C          620 ER  621 (1023)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.69  E-value=0.00066  Score=60.03  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=25.0

Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHH
Q psy9169         289 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT  351 (440)
Q Consensus       289 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~  351 (440)
                      +.|..++.++++.|+..+...++                  .+.|..+ .++++.|+..|...
T Consensus       197 ~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~  240 (244)
T 1lrv_A          197 DDLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGR  240 (244)
T ss_dssp             GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHH
Confidence            45555666666666666665533                  2344444 66666777666543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.54  E-value=0.33  Score=52.17  Aligned_cols=220  Identities=11%  Similarity=0.103  Sum_probs=137.8

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC----c
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT----S  149 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~----~  149 (440)
                      .++.++..+.+++.+.+.+|-..|..+ ...  +        +....+..+| .+.++.+|..|+.+|.+.....    +
T Consensus        29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~-q~s--p--------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~   97 (1073)
T 3gjx_A           29 LLDNVVNCLYHGEGAQQRMAQEVLTHL-KEH--P--------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILP   97 (1073)
T ss_dssp             HHHHHHHTTTCSSHHHHHHHHHHHHTS-SCC--S--------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHH-HcC--c--------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCC
Confidence            356677777788888888888888644 222  2        3455566666 5678999999999999986521    2


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCC-----CHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHH
Q psy9169         150 EQTMTVINANAIPKFLQLLSSP-----HLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIV  223 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~  223 (440)
                      ......+...++..+...-.++     ++.++.+.+.++..++... |..     -...++.++..+..+  .......+
T Consensus        98 ~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~~--~~~~~~~L  170 (1073)
T 3gjx_A           98 RNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRTS--ESLCQNNM  170 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCCC--HHHHHHHH
Confidence            2233344455666666654432     4667788888888887321 110     134566666666422  34555666


Q ss_pred             HHHHhhhhCCCCC----CCHH-------HH----hhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCC
Q psy9169         224 WAISNLCRNKNPA----PDFE-------KI----KICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGV  287 (440)
Q Consensus       224 ~~L~~l~~~~~~~----~~~~-------~~----~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~  287 (440)
                      ++|..|+..-...    ....       ..    ..+++.+..++. ..++++...++.++..+...-+  +..+++.++
T Consensus       171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~l  248 (1073)
T 3gjx_A          171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKL  248 (1073)
T ss_dssp             HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSH
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchH
Confidence            7777666541010    0000       11    123344444443 4678888889999998887654  467788898


Q ss_pred             hHHH-HHhccCCChhHHHHHHHHHHHhhcC
Q psy9169         288 VPRL-VELLDSEETTILTAALRTVGNIATG  316 (440)
Q Consensus       288 ~~~L-v~lL~~~~~~v~~~al~~L~nl~~~  316 (440)
                      ++.| ..+|.  ++.++..|+.||..|+..
T Consensus       249 l~~L~~~~L~--~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          249 ISTLIYKFLN--VPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             HHHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence            9988 47764  568999999999999874

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=96.45  E-value=0.44  Score=50.98  Aligned_cols=212  Identities=11%  Similarity=0.097  Sum_probs=126.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCC--ChHHHHHHHHHHHHHhCCCcHH----HHHHHhc
Q psy9169          86 SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDE--NPNTQFEATWALTNIASGTSEQ----TMTVINA  158 (440)
Q Consensus        86 ~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~--~~~i~~~a~~~L~nla~~~~~~----~~~i~~~  158 (440)
                      .|+..|.+|-..|..+ ...+          ++......+| .++  ++.+|.-|+.+|.+....-+..    ....+..
T Consensus        20 sd~~~r~~A~~~L~~~-q~sp----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~   88 (980)
T 3ibv_A           20 VGPIIKQQATDFIGSL-RSSS----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD   88 (980)
T ss_dssp             SCHHHHHHHHHHHHHH-HHST----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-HcCh----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH
Confidence            3788899888888765 3222          2456677777 332  7899999999998775421122    2233334


Q ss_pred             CCHHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC---
Q psy9169         159 NAIPKFLQLLS-SPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK---  233 (440)
Q Consensus       159 g~i~~L~~lL~-~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---  233 (440)
                      .++..+...-. .....++.+.+.+|..++... |.     .-.+.++.|+.++..+.........+.+|..++..-   
T Consensus        89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~-----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~  163 (980)
T 3ibv_A           89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS-----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADS  163 (980)
T ss_dssp             HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT-----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc-----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhc
Confidence            45555554211 233668888888888887321 11     123456777777754331123344444555333221   


Q ss_pred             CCCCCH----------HH-----HhhHHHHHHHhh----cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh
Q psy9169         234 NPAPDF----------EK-----IKICLPLLNQLI----HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL  294 (440)
Q Consensus       234 ~~~~~~----------~~-----~~~~~~~L~~ll----~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~l  294 (440)
                      ......          ..     ...+++....+|    ...++.++..++.++......-+  ...+++.++++.+..+
T Consensus       164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~  241 (980)
T 3ibv_A          164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSF  241 (980)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHH
T ss_pred             ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHH
Confidence            000110          00     011133333333    34788899999999998887544  3566777889999998


Q ss_pred             ccCCChhHHHHHHHHHHHhhcCC
Q psy9169         295 LDSEETTILTAALRTVGNIATGN  317 (440)
Q Consensus       295 L~~~~~~v~~~al~~L~nl~~~~  317 (440)
                      |..  +.++..|+.||..++...
T Consensus       242 L~~--~~~r~~A~ecL~ei~~k~  262 (980)
T 3ibv_A          242 LQI--EELRCAACETMTEIVNKK  262 (980)
T ss_dssp             TTS--HHHHHHHHHHHHHHHHSC
T ss_pred             cCC--hHHHHHHHHHHHHHHHcC
Confidence            875  689999999999998743

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.28  E-value=0.11  Score=45.32  Aligned_cols=142  Identities=14%  Similarity=0.130  Sum_probs=93.9

Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HH-HHHHHH--------
Q psy9169         257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVIQ--------  326 (440)
Q Consensus       257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~-~~~l~~--------  326 (440)
                      +......++.||..+..........+-..+.+..|+..|.++++.++..|+..|+-+|..++ .. ...+++        
T Consensus        67 ~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~  146 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  146 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHh
Confidence            45678889999999987666554444445789999999999999999999999998886443 12 222222        


Q ss_pred             --cCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHH
Q psy9169         327 --AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCY  404 (440)
Q Consensus       327 --~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~  404 (440)
                        ..-+..+++.+.+.+..--+.++..+-|..-.+++..+.=      -.++..+..+|..+.+..+....++++..+-.
T Consensus       147 ~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R------~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          147 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR------VHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHH------HHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence              2345566666664332223445666666554333322211      14577888999999999998888888765544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.03  E-value=0.008  Score=53.05  Aligned_cols=21  Identities=24%  Similarity=0.165  Sum_probs=15.3

Q ss_pred             HHHHHHHhcCCcHHHHHHHHHH
Q psy9169         385 LEKLEALQHHENETVYQKCYKI  406 (440)
Q Consensus       385 l~~l~~L~~~~~~~v~~~a~~i  406 (440)
                      .+.|..| ..+++.|+..|..-
T Consensus       220 ~~~L~~L-~D~~~~VR~aa~~~  240 (244)
T 1lrv_A          220 LEALREL-DEPDPEVRLAIAGR  240 (244)
T ss_dssp             HHHHHHC-CCCCHHHHHHHHCC
T ss_pred             HHHHHHc-cCCCHHHHHHHHHH
Confidence            4566677 88888888887643

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=96.01  E-value=2.2  Score=45.93  Aligned_cols=292  Identities=12%  Similarity=0.123  Sum_probs=151.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHH-HhccCCChHHHHHHHHHHHHHhCCCc-HHHHHHH--hcCC
Q psy9169          85 SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV-ELLDDENPNTQFEATWALTNIASGTS-EQTMTVI--NANA  160 (440)
Q Consensus        85 s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv-~lL~~~~~~i~~~a~~~L~nla~~~~-~~~~~i~--~~g~  160 (440)
                      +.++.+...++.++..+++=   .++..+++.++++.++ .+|  ++++++..|+.||+.|.+... +....+.  =.++
T Consensus       218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~  292 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLT  292 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            56777777788888877642   3467888999999884 666  467899999999999986532 2122221  1122


Q ss_pred             HHHHHHhhC-------------CCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-C-------ChHHHHhhhCCCCcHHHH
Q psy9169         161 IPKFLQLLS-------------SPHLNLAEQATWALGNIAGDGARARDLLLGL-G-------TMPQILALVQPNTPTTFL  219 (440)
Q Consensus       161 i~~L~~lL~-------------~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~-g-------~i~~L~~ll~~~~~~~~~  219 (440)
                      +..+..++.             ..+.+.....+.++..+...   ....+... +       ++..|+.+-..+ +.++.
T Consensus       293 ~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~  368 (1073)
T 3gjx_A          293 MMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIF  368 (1073)
T ss_dssp             HHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHH
T ss_pred             HHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHH
Confidence            222222221             12234444444455444311   11222211 1       233344444444 36666


Q ss_pred             HHHHHH----HHhhhhCCC----CC----------CCHH--HHhhHHHH----HHHhhcCCC------------------
Q psy9169         220 RNIVWA----ISNLCRNKN----PA----------PDFE--KIKICLPL----LNQLIHTTD------------------  257 (440)
Q Consensus       220 ~~a~~~----L~~l~~~~~----~~----------~~~~--~~~~~~~~----L~~ll~~~d------------------  257 (440)
                      +.+...    ...|....+    ..          ....  ...+++..    ++.-+..++                  
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            554433    223332210    01          0111  12233333    333332111                  


Q ss_pred             --H-----HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC--CChhHHHHHHHHHHHhhcCChHH-HHHHHHc
Q psy9169         258 --V-----ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTILTAALRTVGNIATGNDHQ-TDCVIQA  327 (440)
Q Consensus       258 --~-----~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~-~~~l~~~  327 (440)
                        .     ....+++..+.++..  .+....     +++.|-+.+..  .+......++|++|.++..-.+. -..++- 
T Consensus       449 d~~~~~ly~~mrd~L~~lt~l~~--~~~~~i-----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-  520 (1073)
T 3gjx_A          449 DTDSINLYKNMRETLVYLTHLDY--VDTEII-----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-  520 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCH--HHHHHH-----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-
T ss_pred             hcchHHHHHHHHHHHHHHhcCCH--HHHHHH-----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-
Confidence              0     123334433333321  222222     24445444443  35788999999999998543321 212222 


Q ss_pred             CCHHHHHHHhcCC-----ChhHHHHHHHHHHHHhc---CChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHH
Q psy9169         328 GGLQKMKKLLSSS-----RVNIVKEAAWTISNITA---GNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETV  399 (440)
Q Consensus       328 g~l~~L~~ll~~~-----~~~i~~~a~~~L~nl~~---~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v  399 (440)
                      .+++.|+.+..++     .+.++...||+++..+.   ..++....+                  +.+|....+..++.|
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~v------------------l~~L~~~m~~~~~~v  582 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTV------------------VNKLFEFMHETHDGV  582 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHH------------------HHHHHHHTTCCSTTH
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHH------------------HHHHHHHHhcCCHHH
Confidence            3677788777655     23466677899988664   233333322                  445555567788999


Q ss_pred             HHHHHHHHHhhC
Q psy9169         400 YQKCYKIISMAF  411 (440)
Q Consensus       400 ~~~a~~il~~~~  411 (440)
                      +.+|+..+.++-
T Consensus       583 q~aA~~af~~i~  594 (1073)
T 3gjx_A          583 QDMACDTFIKIA  594 (1073)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.84  E-value=1.8  Score=47.42  Aligned_cols=258  Identities=7%  Similarity=0.036  Sum_probs=144.7

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCC----
Q psy9169          76 VPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASG----  147 (440)
Q Consensus        76 i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~----  147 (440)
                      +..++..+.++  +...+.+|-..|..+-. .+          .....+...|  .+.++.+|..|+.+|.+....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~-~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKE-KC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-HC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHh-Cc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            44444444444  67778888888876522 11          1344444444  466789999999999987532    


Q ss_pred             -CcHHHHHHHhcCCHHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCCCcHHHHHHH
Q psy9169         148 -TSEQTMTVINANAIPKFLQLLSS---PHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNI  222 (440)
Q Consensus       148 -~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a  222 (440)
                       +++.+ ..+...++..+......   ....++.+++.++..|+... +.     .-.+.++.|+.++..+  ......+
T Consensus        82 l~~e~k-~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~-----~Wp~ll~~L~~~~~~~--~~~~e~~  153 (1204)
T 3a6p_A           82 MSRLEK-VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ-----HWPDMLIELDTLSKQG--ETQTELV  153 (1204)
T ss_dssp             SCHHHH-HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHHHHHTC--HHHHHHH
T ss_pred             CCHHHH-HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc-----cchHHHHHHHHHhcCC--HHHHHHH
Confidence             23333 33344455555544221   34788899999999888431 21     1245678888887652  4556777


Q ss_pred             HHHHHhhhhCC-C-CCCCHHHH-----------hhHHHHHHHhhcC-------------------CCHHHHHHHHHHHHH
Q psy9169         223 VWAISNLCRNK-N-PAPDFEKI-----------KICLPLLNQLIHT-------------------TDVETLSDICWALSY  270 (440)
Q Consensus       223 ~~~L~~l~~~~-~-~~~~~~~~-----------~~~~~~L~~ll~~-------------------~d~~i~~~a~~~L~~  270 (440)
                      +.+|..|+..- . ........           ..+++.+..++..                   .+..+...++.++.+
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            77888776431 0 11111111           1344444444432                   123466677777776


Q ss_pred             hccCChhhHHHHHhcC--ChHHHHHhccCCChhHHHHHHHHHHHhhcCC--hHHHHHHHHc---CCHHHHHHHhc-----
Q psy9169         271 ISDGHNDKIQAVVDTG--VVPRLVELLDSEETTILTAALRTVGNIATGN--DHQTDCVIQA---GGLQKMKKLLS-----  338 (440)
Q Consensus       271 l~~~~~~~~~~l~~~g--~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~--~~~~~~l~~~---g~l~~L~~ll~-----  338 (440)
                      ....-+  ...+.+..  +++.+..++.  ++.++..|+.||..++...  +.....++..   ..+..++..+.     
T Consensus       234 ~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~  309 (1204)
T 3a6p_A          234 YIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG  309 (1204)
T ss_dssp             TTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred             HHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence            654433  13333433  6777777766  4578999999999999754  2222222211   11233444432     


Q ss_pred             ---CCChhHHHHHHHHHHHHh
Q psy9169         339 ---SSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       339 ---~~~~~i~~~a~~~L~nl~  356 (440)
                         ..+.++.+..+..+..++
T Consensus       310 ~~~e~d~e~~k~l~~ll~~lg  330 (1204)
T 3a6p_A          310 GLVEKHYVFLKRLCQVLCALG  330 (1204)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHH
Confidence               113456777777777765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.82  E-value=0.69  Score=42.02  Aligned_cols=187  Identities=14%  Similarity=0.132  Sum_probs=108.5

Q ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCC----HHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchh
Q psy9169         119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANA----IPKFLQLLSS-PHLNLAEQATWALGNIAGDGARA  193 (440)
Q Consensus       119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~----i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~  193 (440)
                      +..+..++ .-.++.++-++-+|.-.+.+ +.....+.+.+.    +..+...+.+ ..+..+-.++.+++|+... +..
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g  181 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG  181 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence            34555555 33345556666666655543 444444433222    2233444443 3366688899999999987 556


Q ss_pred             HHHHHhc--CChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc-CCCHHHHHHHHHHHHH
Q psy9169         194 RDLLLGL--GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSY  270 (440)
Q Consensus       194 r~~i~~~--g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~  270 (440)
                      |+.+...  .+++.+...+.. .+..++..++.++.|++..............++..+..++. ..|.+....++-+|++
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~-~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt  260 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSG-SNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT  260 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSS-CCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            6666532  244445544433 34788888889999988542111233344456666666665 3688999999999999


Q ss_pred             hccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169         271 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT  309 (440)
Q Consensus       271 l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~  309 (440)
                      +...+.+..+.....|+-..+-++.....+.-...+++.
T Consensus       261 L~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~  299 (304)
T 3ebb_A          261 LISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRF  299 (304)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHH
T ss_pred             HHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHH
Confidence            998776654444444655555555554333223334443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.77  E-value=0.38  Score=41.56  Aligned_cols=144  Identities=10%  Similarity=0.031  Sum_probs=103.9

Q ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhHHH
Q psy9169         119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAG-DGARARDL  196 (440)
Q Consensus       119 i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~-~~~~~r~~  196 (440)
                      ++....+..++..++|..|+..|+.+ ...         ..+++.+.. +-.+++-.|++.+..+++.++. ..++    
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----  138 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----  138 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence            44444555888889999999999887 311         235666666 5556779999999999999984 3333    


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                          ..++.+.....+++ ..+++.++..+.--+.....   ......++|.|-.+..+++.-|+.++.|.|..++..++
T Consensus       139 ----~~l~~~~~W~~d~n-~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P  210 (240)
T 3l9t_A          139 ----KALPIIDEWLKSSN-LHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP  210 (240)
T ss_dssp             ----TTHHHHHHHHHCSS-HHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred             ----HHHHHHHHHhcCCC-HHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence                14666777766666 89999998887654433211   12234578888888888999999999999999999998


Q ss_pred             hhHHHHHh
Q psy9169         277 DKIQAVVD  284 (440)
Q Consensus       277 ~~~~~l~~  284 (440)
                      +.+..+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77655544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.77  E-value=0.59  Score=44.05  Aligned_cols=140  Identities=14%  Similarity=0.136  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HH-HHHHHH--------
Q psy9169         257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVIQ--------  326 (440)
Q Consensus       257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~-~~~l~~--------  326 (440)
                      +......++.||..+..........+-....+..|+..|.++.+.++..|+..|+.+|..+. .. ...+++        
T Consensus       133 d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~  212 (383)
T 3eg5_B          133 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  212 (383)
T ss_dssp             CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHh
Confidence            45778889999999987666554444455789999999999999999999999999987543 21 222332        


Q ss_pred             --cCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHH
Q psy9169         327 --AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQK  402 (440)
Q Consensus       327 --~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~  402 (440)
                        ..-+..++..+.+....--..++..+-|..-.+++..+.-      -.++..+..+|..+.+..+....++++..+
T Consensus       213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R------~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFR------VHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHH------HHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHH------HHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence              2346677777776432223346666666554332222211      134677888998888888887777766543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.58  E-value=0.072  Score=48.48  Aligned_cols=129  Identities=13%  Similarity=0.159  Sum_probs=98.7

Q ss_pred             HHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc-cCCChhHHH
Q psy9169         226 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILT  304 (440)
Q Consensus       226 L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL-~~~~~~v~~  304 (440)
                      |.+|..++....+-......+..+...++..+.++..+.+..|...++...-+...+  ...+|.++..+ .+++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceEE
Confidence            445555543445555667788889999999999999999999998887654221111  24578887777 577889999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC-------ChhHHHHHHHHHHHHh
Q psy9169         305 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-------RVNIVKEAAWTISNIT  356 (440)
Q Consensus       305 ~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-------~~~i~~~a~~~L~nl~  356 (440)
                      .....|+|.+++.....+..+..|+++.|...+...       +..-++.||.+++|..
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L  402 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL  402 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence            999999999999988899999999999999877543       3356778999888865

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.57  E-value=0.32  Score=42.37  Aligned_cols=97  Identities=9%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCC-----hhHHHHHHHHHHHhhc-CChHHHHHHHHcCCHHHHH
Q psy9169         261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-----TTILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMK  334 (440)
Q Consensus       261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~-----~~v~~~al~~L~nl~~-~~~~~~~~l~~~g~l~~L~  334 (440)
                      +..|+..+-.++.+++. ...++++++.-.|..+|...+     ..++..++..+|.++. .+++....+++..++|...
T Consensus        73 VcnaLaLlQcvAshpet-r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           73 VCNALALLQCVASHPET-RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHHCTTT-HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCcch-hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            34455555666765554 478899998888888886543     3588899999999985 5566788899999999999


Q ss_pred             HHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         335 KLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       335 ~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      +.|+.++.-.|.-|.+++..|..+
T Consensus       152 rime~GselSKtvAtfIlqKIL~d  175 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLD  175 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHhhccHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998754

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.54  E-value=0.99  Score=42.50  Aligned_cols=157  Identities=12%  Similarity=0.086  Sum_probs=105.4

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-----------CCChHHHHHHHHHHHH
Q psy9169          76 VPEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-----------DENPNTQFEATWALTN  143 (440)
Q Consensus        76 i~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-----------~~~~~i~~~a~~~L~n  143 (440)
                      ....+..|.++- .......+..|+..+...+...++.++ .+++..|+.+|.           ..+...+..++.||..
T Consensus        68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka  146 (383)
T 3eg5_B           68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA  146 (383)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence            455677777543 333345566777666555434467777 667888888882           1234788999999999


Q ss_pred             HhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHhhhC
Q psy9169         144 IASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQ  211 (440)
Q Consensus       144 la~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~L~~ll~  211 (440)
                      +..........+-....+..|+..|.++++.++..++..|.-+|.... .. ...++          +..-+..++..+.
T Consensus       147 lmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          147 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             HTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             HhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            985533333344556789999999999999999999999999996543 21 22222          3345777888888


Q ss_pred             CCCcHHHHHHHHHHHHhhhhCC
Q psy9169         212 PNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       212 ~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      +..+.+....++..+-.+..+.
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~  248 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPA  248 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCC
Confidence            7655677766666666666554

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.43  E-value=1.1  Score=39.08  Aligned_cols=154  Identities=12%  Similarity=0.106  Sum_probs=95.6

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc-----------CCChHHHHHHHHHHHHHhC
Q psy9169          79 MIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-----------DENPNTQFEATWALTNIAS  146 (440)
Q Consensus        79 lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~-----------~~~~~i~~~a~~~L~nla~  146 (440)
                      .++.|++.. .+.....+..|+..+...+...++.+ ..+++..|+.+|.           ..+...+..++.||..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            445555432 22223345555544544433346666 4677888888772           1135678899999999985


Q ss_pred             CCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHhhhCCCC
Q psy9169         147 GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQPNT  214 (440)
Q Consensus       147 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~L~~ll~~~~  214 (440)
                      ........+-..+++..|+..|.++++.++..++..|+-+|..+. .. ...++          +..-+..+++.+....
T Consensus        84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~  163 (233)
T 2f31_A           84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  163 (233)
T ss_dssp             SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred             ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC
Confidence            533333344456789999999999999999999999998885433 12 22222          2335666777776555


Q ss_pred             cHHHHHHHHHHHHhhhhCC
Q psy9169         215 PTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       215 ~~~~~~~a~~~L~~l~~~~  233 (440)
                      +.+....++..+-.+..+.
T Consensus       164 ~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          164 SIALKVGCLQLINALITPA  182 (233)
T ss_dssp             CHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHCCC
Confidence            5666666655555555554

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.37  E-value=0.24  Score=45.07  Aligned_cols=146  Identities=12%  Similarity=0.096  Sum_probs=90.7

Q ss_pred             HHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHH--HhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChh--hHH
Q psy9169         205 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEK--IKICLPLLNQLIHTTDVETLSDICWALSYISDGHND--KIQ  280 (440)
Q Consensus       205 ~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~--~~~  280 (440)
                      .+...+.....+..+--++.++.|+..+. .......  ...+++.+...+.+.+..++..+...+.|++.....  ...
T Consensus       151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~  229 (304)
T 3ebb_A          151 HLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIE  229 (304)
T ss_dssp             HHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred             HHHHhcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCch
Confidence            34444544444556778888999999875 2222221  235666666666677889999999999999843110  001


Q ss_pred             HHHhcCChHHHHHhcc-CCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHH
Q psy9169         281 AVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS  353 (440)
Q Consensus       281 ~l~~~g~~~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~  353 (440)
                      .  ...++..+..++. ..+.+....++-+||+++.++.+..+.....|+...+-.+...+.+.-..++|..|.
T Consensus       230 ~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~  301 (304)
T 3ebb_A          230 G--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL  301 (304)
T ss_dssp             H--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            0  0113444555553 347789999999999999987766666666677777777776644433444444443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.34  E-value=0.28  Score=42.36  Aligned_cols=138  Identities=12%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             HhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHH-hhcCCCHHHHHHHHHHHHHhcc-CChhhHHHHHh
Q psy9169         207 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ-LIHTTDVETLSDICWALSYISD-GHNDKIQAVVD  284 (440)
Q Consensus       207 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-ll~~~d~~i~~~a~~~L~~l~~-~~~~~~~~l~~  284 (440)
                      ..+..+.. .+++-.|+.+|..+ . .        ...+++.+.. +.....-.|+..++.++..++. ..++.      
T Consensus        77 ~~L~~~~~-deVR~~Av~lLg~~-~-~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~------  139 (240)
T 3l9t_A           77 FLAYQSDV-YQVRMYAVFLFGYL-S-K--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK------  139 (240)
T ss_dssp             HHHHTCSS-HHHHHHHHHHHHHT-T-T--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT------
T ss_pred             HHHHhCcc-hHHHHHHHHHHHhc-c-C--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH------
Confidence            33334444 78888999988877 2 1        2457788877 5566778999999999998885 33322      


Q ss_pred             cCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh--HHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169         285 TGVVPRLVELLDSEETTILTAALRTVGNIATGND--HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ  362 (440)
Q Consensus       285 ~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  362 (440)
                        .++.+...+.+++..++..|+..+.--+....  ....     -+++.|-.+..+++.-|++..+|.|..++...|+.
T Consensus       140 --~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~-----~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          140 --ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPN-----EAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             --THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHH-----HHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHH-----HHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHH
Confidence              47888899999999999998877543222110  1111     14667777777888899999999999999999887


Q ss_pred             HHHHhh
Q psy9169         363 IDHVIQ  368 (440)
Q Consensus       363 ~~~~i~  368 (440)
                      +...++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655544

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=95.22  E-value=1.3  Score=41.69  Aligned_cols=140  Identities=14%  Similarity=0.149  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCCh-HH-HHHHH---------
Q psy9169         257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVI---------  325 (440)
Q Consensus       257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~-~~~l~---------  325 (440)
                      +......++.||..+..........+-..+++..|+..|.++++.++..++..|+.+|..++ .. ...++         
T Consensus        71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~  150 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  150 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence            45778889999999987766654455555789999999999999999999999998887443 22 22222         


Q ss_pred             -HcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHH
Q psy9169         326 -QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQK  402 (440)
Q Consensus       326 -~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~  402 (440)
                       +..-+..|+..+......--+.++..+-|..-.+++..+.=+      .++..+..+|..+.|..+....++++..+
T Consensus       151 ~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~------~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          151 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV------HIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH------HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             CchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH------HHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence             223455677777644332234456666665543333222211      34677788888888888877777766544

>2p8q_B Snurportin-1; heat repeat, IBB-domain, importin, karyopherin, transport; 2.35A {Homo sapiens} PDB: 2q5d_C 3lww_B

Probab=94.66  E-value=0.023  Score=33.69  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHHHHHhhhhHHHHhhcc
Q psy9169           9 DRKASFKNAGKSFDEMRRKRCEMNVELRKAHKDDQLFKRRN   49 (440)
Q Consensus         9 ~r~~~~k~~~~~~~~~r~~R~~~~~~lRk~kr~~~l~krR~   49 (440)
                      .|...||++++..++..|+|+  ..++-|++|-+.++.-|+
T Consensus         2 PR~sqYK~k~~~~~q~~rRr~--~L~~QK~~R~D~~nhaR~   40 (40)
T 2p8q_B            2 PRLSQYKSKYSSLEQSERRRR--LLELQKSKRLDYVNHARR   40 (40)
T ss_dssp             CCGGGTTCCCCSCSTTHHHHH--HHHHHHHHHHHHHHTTTC
T ss_pred             ccHHhhccccchhhHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence            478899999887777776665  689999999888776653

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.10  E-value=2.9  Score=45.08  Aligned_cols=170  Identities=14%  Similarity=0.131  Sum_probs=104.7

Q ss_pred             hHHHHhhhCCC---CcHHHHHHHHHHHHhhh----hCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q psy9169         203 MPQILALVQPN---TPTTFLRNIVWAISNLC----RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH  275 (440)
Q Consensus       203 i~~L~~ll~~~---~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~  275 (440)
                      +..+..++...   .++.+...++.+++.|.    ...... ....+..+...+.+.+...+.+-+.-++.+|+|+... 
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence            45555666532   23455666666666554    333222 2223455666666777778888899999999999852 


Q ss_pred             hhhHHHHHhcCChHHHHHhccC-------CChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcC--CChhHHH
Q psy9169         276 NDKIQAVVDTGVVPRLVELLDS-------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS--SRVNIVK  346 (440)
Q Consensus       276 ~~~~~~l~~~g~~~~Lv~lL~~-------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~--~~~~i~~  346 (440)
                                ..++.|.+++..       ....++..|+++|.+++...+...+        +.+..+..+  .++++|.
T Consensus       471 ----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRi  532 (1056)
T 1lsh_A          471 ----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRI  532 (1056)
T ss_dssp             ----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHH
T ss_pred             ----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHH
Confidence                      236677777642       1346888999999999877665544        557777743  4678999


Q ss_pred             HHHHHHHHHhcCChHHHHHHhh---cCcchHHHHHHHHcCcHHHHHHHhcCCcHH
Q psy9169         347 EAAWTISNITAGNSRQIDHVIQ---EGELNQMALLVEESGGLEKLEALQHHENET  398 (440)
Q Consensus       347 ~a~~~L~nl~~~~~~~~~~~i~---~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~  398 (440)
                      .|++.|... .-+...++.+..   .........++     ...|..+..+.+|.
T Consensus       533 aA~~~Lm~t-~P~~~~l~~ia~~l~~E~~~QV~sfv-----~S~l~sla~s~~P~  581 (1056)
T 1lsh_A          533 RSCIVFFES-KPSVALVSMVAVRLRREPNLQVASFV-----YSQMRSLSRSSNPE  581 (1056)
T ss_dssp             HHHHHHHHT-CCCHHHHHHHHHHHTTCSCHHHHHHH-----HHHHHHHTTCCSGG
T ss_pred             HHHHHHHHH-CcCHHHHHHHHHHHhhCchHHHHHHH-----HHHHHHHHhcCCcc
Confidence            999888643 223344444443   11122333333     45577777777664

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.03  E-value=4  Score=38.40  Aligned_cols=156  Identities=12%  Similarity=0.088  Sum_probs=100.0

Q ss_pred             HHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc----C-------CChHHHHHHHHHHHHH
Q psy9169          77 PEMIEGMKSSNP-KMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD----D-------ENPNTQFEATWALTNI  144 (440)
Q Consensus        77 ~~lv~~L~s~~~-~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~----~-------~~~~i~~~a~~~L~nl  144 (440)
                      ...++.|.+... ......+..|+..+...+...++.+. .+++..|+.+|.    .       .+...+..++.||..|
T Consensus         7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal   85 (386)
T 2bnx_A            7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   85 (386)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            445666665432 22233455555555444333456665 566777777772    1       1356789999999999


Q ss_pred             hCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHhhhCC
Q psy9169         145 ASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQP  212 (440)
Q Consensus       145 a~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-r~~i~----------~~g~i~~L~~ll~~  212 (440)
                      ..........+-..+++..|+..|.++++.++..++..|+.+|..+. .. ...++          +..-+..++..+..
T Consensus        86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  165 (386)
T 2bnx_A           86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  165 (386)
T ss_dssp             TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence            86543333445556789999999999999999999999988885433 22 22222          33456678888876


Q ss_pred             CCcHHHHHHHHHHHHhhhhCC
Q psy9169         213 NTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       213 ~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      ..+.++...++..+-.+..+.
T Consensus       166 ~~~~e~~~a~m~lIN~lv~~~  186 (386)
T 2bnx_A          166 GTSIALKVGCLQLINALITPA  186 (386)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHHHHHCCC
Confidence            666777776666666666664

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=93.95  E-value=3.1  Score=36.65  Aligned_cols=90  Identities=13%  Similarity=0.108  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHh
Q psy9169          88 PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL  167 (440)
Q Consensus        88 ~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~l  167 (440)
                      .+.+...+...+.++.... +.   +. ..+++.++.+..+.+.++|...+..+...+...++.     -..+++.|..+
T Consensus        29 ~~~kl~~L~qa~el~~~~d-p~---ll-~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~l~~L~~L   98 (257)
T 3gs3_A           29 PSTKCELLAKVQETVLGSC-AE---LA-EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-----LPHVINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHHTTTT-GG---GH-HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHccC-Hh---HH-HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            3688999999998766543 32   11 235777888777788999999999999988544432     23567888999


Q ss_pred             hCCCCHHHHHHHHHHHHHhh
Q psy9169         168 LSSPHLNLAEQATWALGNIA  187 (440)
Q Consensus       168 L~~~~~~v~~~a~~~L~nl~  187 (440)
                      +.++++.+...++.+..++-
T Consensus        99 l~d~d~~V~K~~I~~~~~iY  118 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIY  118 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            99888999988888877764

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.75  E-value=0.36  Score=46.19  Aligned_cols=122  Identities=14%  Similarity=0.126  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHH
Q psy9169         171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN  250 (440)
Q Consensus       171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~  250 (440)
                      ++...+..|+..|.....+-|...+.     ++..+++++...+ ..++..++..|..+|.+.       ....+...|+
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~~-------~i~kiaDvL~  106 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDED-VSIRRQAIKELPQFATGE-------NLPRVADILT  106 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSS-HHHHHHHHHHGGGGCCTT-------CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhccc-HHHHHHHHHhhHHHhhhh-------hhhhHHHHHH
Confidence            35778888888888888777777554     4678888888777 889999999999999772       1677888999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         251 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       251 ~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                      ++|..+++.-...+-++|..+...++.        +.+..+...+..++..++..++..|..-
T Consensus       107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k  161 (507)
T 3u0r_A          107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK  161 (507)
T ss_dssp             HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            999999988888888888777765542        2244444444445677888888777543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=93.67  E-value=4.6  Score=37.77  Aligned_cols=89  Identities=9%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhh
Q psy9169          89 KMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL  168 (440)
Q Consensus        89 ~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL  168 (440)
                      +.++..+..++.++-... +.    .-.++++.++++-.+.+.++|...+..|...+....+..     ..+++.|..+|
T Consensus        40 ~~Kl~~L~q~~EL~l~~d-ps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL  109 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKD-PT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLL  109 (386)
T ss_dssp             THHHHHHHHHHHHHHTTC-GG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccC-HH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            468888888888755432 31    224689999999988899999999999998886443332     34678889999


Q ss_pred             CCCCHHHHHHHHHHHHHhh
Q psy9169         169 SSPHLNLAEQATWALGNIA  187 (440)
Q Consensus       169 ~~~~~~v~~~a~~~L~nl~  187 (440)
                      .+.++.+...++.+.+++-
T Consensus       110 ~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            9888999998888888764

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.22  E-value=3  Score=44.99  Aligned_cols=168  Identities=12%  Similarity=0.121  Sum_probs=108.0

Q ss_pred             HHHHHHhccC----CChHHHHHHHHHHHHHhC----CCcHHHHHHHhcCCHHHHH----HhhCCCCHHHHHHHHHHHHHh
Q psy9169         119 VPICVELLDD----ENPNTQFEATWALTNIAS----GTSEQTMTVINANAIPKFL----QLLSSPHLNLAEQATWALGNI  186 (440)
Q Consensus       119 i~~Lv~lL~~----~~~~i~~~a~~~L~nla~----~~~~~~~~i~~~g~i~~L~----~lL~~~~~~v~~~a~~~L~nl  186 (440)
                      +..+..++.+    .++.++..++.+++.+..    .++.+     ....++.+.    ..+...+.+-+..++.+|||+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence            4455566633    456777777777777753    11111     112244444    444556667778899999998


Q ss_pred             hCCCchhHHHHHhcCChHHHHhhhCC------CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh--cCCCH
Q psy9169         187 AGDGARARDLLLGLGTMPQILALVQP------NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI--HTTDV  258 (440)
Q Consensus       187 ~~~~~~~r~~i~~~g~i~~L~~ll~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll--~~~d~  258 (440)
                      ...           ..++.|..++..      +....++..|+|+|..+....        -..+-+.+.++.  ...++
T Consensus       468 g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--------p~~v~~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          468 GQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--------PRKVQEIVLPIFLNVAIKS  528 (1056)
T ss_dssp             TCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--------HHHHHHHHHHHHHCTTSCH
T ss_pred             CCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--------hHHHHHHHHHHhcCCCCCh
Confidence            743           246777777742      223568889999999998543        123455666777  45788


Q ss_pred             HHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-CChhHHHHHHHHHHHhhcCChHH
Q psy9169         259 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGNDHQ  320 (440)
Q Consensus       259 ~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~  320 (440)
                      +++..|+..|....  ++.        ..+..+...+.. ++..|.......|.+++......
T Consensus       529 EvRiaA~~~Lm~t~--P~~--------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~  581 (1056)
T 1lsh_A          529 ELRIRSCIVFFESK--PSV--------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  581 (1056)
T ss_dssp             HHHHHHHHHHHHTC--CCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHHHHHC--cCH--------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence            99999999885433  221        125667777755 57788888888898888766443

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.78  E-value=1.8  Score=38.74  Aligned_cols=137  Identities=12%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHHH-hcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc--CCHHHH
Q psy9169         257 DVETLSDICWALSYISDGHNDKIQAVV-DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQKM  333 (440)
Q Consensus       257 d~~i~~~a~~~L~~l~~~~~~~~~~l~-~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~--g~l~~L  333 (440)
                      |......++..|..++..-....+.+- +-.++..|+ +.....+.++..|.++|+....++|.....+.+.  .++..+
T Consensus        41 D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           41 DIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            445667777777777754443322222 223444444 3344566799999999999999999888877663  233333


Q ss_pred             HHHh----cCC---ChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHH
Q psy9169         334 KKLL----SSS---RVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCY  404 (440)
Q Consensus       334 ~~ll----~~~---~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~~a~  404 (440)
                      +.-|    ..+   ...++|.-..+|.-|+..+...                  ...|++.|..+..-.  +++++.++.
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F------------------~~~~m~~L~~ly~~~~~d~~~k~Kvl  181 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL------------------PIYSTVVLQNVYERNNKDKQLQIKVL  181 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--------------------CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh------------------hhccHHHHHHHHccCCCCHHHHHHHH
Confidence            3322    221   2345666666666666543211                  133556666655555  899999999


Q ss_pred             HHHHhhCC
Q psy9169         405 KIISMAFN  412 (440)
Q Consensus       405 ~il~~~~~  412 (440)
                      .++..+|.
T Consensus       182 ~li~d~f~  189 (315)
T 3qml_C          182 ELISKILK  189 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcc
Confidence            99999995

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=91.46  E-value=10  Score=36.35  Aligned_cols=254  Identities=14%  Similarity=0.141  Sum_probs=149.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      ...++...+ ++......|+..|.+.+..-++  .    ...++..++.++.+++..||.+|+..|-.+|.+  +...  
T Consensus        31 y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~--l----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~--   99 (507)
T 3u0r_A           31 YQVILDGVK-GGTKEKRLAAQFIPKFFKHFPE--L----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLP--   99 (507)
T ss_dssp             HHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGG--G----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHH--
T ss_pred             HHHHHHhcC-CCHHHHHHHHHHHHHHHhhChh--h----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhh--
Confidence            556666555 4688999999999999876542  1    223588899999999999999999999999976  3333  


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC-CC
Q psy9169         156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN-KN  234 (440)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~  234 (440)
                         .+...|+++|...++.-....-++|..+....+.        +.+..|...+.+++ +.++..++..|..-... ..
T Consensus       100 ---kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~-e~~Rer~lkFi~~kl~~l~~  167 (507)
T 3u0r_A          100 ---RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGE-DIVRERAIKFLSTKLKTLPD  167 (507)
T ss_dssp             ---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSC-HHHHHHHHHHHHHHGGGSCT
T ss_pred             ---hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccc-hHHHHHHHHHHHHHHhhcch
Confidence               4567899999998866666666666666544332        23444444444444 67777777766543322 22


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hhHHHHHhcCChHHHHHh------ccCCChhHHHHHH
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVPRLVEL------LDSEETTILTAAL  307 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~~g~~~~Lv~l------L~~~~~~v~~~al  307 (440)
                      .........-++..+.+.|.+-...-..-....|..+-.... ...+.+     ++.+...      +...+++.....+
T Consensus       168 ~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~sD~e~vdRlI  242 (507)
T 3u0r_A          168 EVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPSDPDCVDRLL  242 (507)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSSCHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCcCHHHHHHHH
Confidence            223344445566667777766555444445555555543222 222222     2333332      1223445444444


Q ss_pred             HHHHHhhc------CChHHHHHHHHcCCHHHHHHHhcCC-ChhHHHHHHHHHHHHhcC
Q psy9169         308 RTVGNIAT------GNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAG  358 (440)
Q Consensus       308 ~~L~nl~~------~~~~~~~~l~~~g~l~~L~~ll~~~-~~~i~~~a~~~L~nl~~~  358 (440)
                      .|+.....      .+......+.+ +++|.+-.+-... .+..+-+...++.-++..
T Consensus       243 ~C~~~ALP~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~  299 (507)
T 3u0r_A          243 QCTRQAVPLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSF  299 (507)
T ss_dssp             HHHHHHGGGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccC
Confidence            44443321      23334454444 3666554443322 234677888888887754

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=91.27  E-value=9.7  Score=35.72  Aligned_cols=248  Identities=12%  Similarity=0.121  Sum_probs=125.3

Q ss_pred             cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         149 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      +......++...+..|+.++.++++.=|+..-.+|.+|-+.-...|..+.. .+-..+.+.+.....-.-....+.+++.
T Consensus       119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgs  197 (403)
T 3fga_B          119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGS  197 (403)
T ss_dssp             HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence            344445566667888999999999988888888887776544444443331 1223344444332222223455666666


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHH-HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVET-LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL  307 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i-~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al  307 (440)
                      +..+-..+.......-+...|+.+-....-.. -.....++......++.....+     +..|++.=-..++.-...-+
T Consensus       198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL  272 (403)
T 3fga_B          198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL  272 (403)
T ss_dssp             HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred             HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHH
Confidence            66665333333333333444555554443222 2334444444554444432221     22232222112222222233


Q ss_pred             HHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHH
Q psy9169         308 RTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLE  386 (440)
Q Consensus       308 ~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~  386 (440)
                      .-|..+... .+...+.+.. .+...+...+.+++..|.+.|.....|      +.+-.++.-. .......+     ..
T Consensus       273 ~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnN------e~i~~li~~n-~~~IlPii-----~p  339 (403)
T 3fga_B          273 NELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNN------EYIMSLISDN-AAKILPIM-----FP  339 (403)
T ss_dssp             HHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGC------HHHHHHHHTT-HHHHHHHH-----HH
T ss_pred             HHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhcc------HHHHHHHHHh-HHHHHHHH-----HH
Confidence            445555532 2333332322 366777778888887777776654422      1111111100 00011111     33


Q ss_pred             HHHH-HhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         387 KLEA-LQHHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       387 ~l~~-L~~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                      .|.. ...|=|+.|+..|..++..+.+-++
T Consensus       340 ~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~  369 (403)
T 3fga_B          340 SLYRNSKTHWNKTIHGLIYNALKLFMEMNQ  369 (403)
T ss_dssp             HHHHTTSCCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhCH
Confidence            4444 3556699999999999999876543

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=88.67  E-value=12  Score=35.20  Aligned_cols=223  Identities=13%  Similarity=0.151  Sum_probs=114.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC-----c
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT-----S  149 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~-----~  149 (440)
                      +-.|+.++.|.|+..|...-..+.++-..-  .....++...+-..|..++ ......-..+.+.+|+.|..|-     +
T Consensus       131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf--~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLke  208 (403)
T 3fga_B          131 VLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  208 (403)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchH
Confidence            566778888888888877777777664322  1234445444556667766 4444444556777777776553     2


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         150 EQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      +++..+     ...|+.+-+.+. ...-.+...++..+...++.....+     +..|++.=-... ..-..-.+.-+..
T Consensus       209 ehk~fl-----~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tn-s~KevlFL~Ele~  277 (403)
T 3fga_B          209 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTH-SPKEVMFLNELEE  277 (403)
T ss_dssp             HHHHHH-----HHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSC-HHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCC-cHHHHHHHHHHHH
Confidence            333322     234444544444 2223455555555554444442222     222222211111 2222222333344


Q ss_pred             hhhCCCCCCCHH-HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhc-----cCCC
Q psy9169         229 LCRNKNPAPDFE-KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELL-----DSEE  299 (440)
Q Consensus       229 l~~~~~~~~~~~-~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL-----~~~~  299 (440)
                      +...- +..++. ....++..+..++.+.+-.|...|+....      .+.+-.++..   .++|.+...|     .|-+
T Consensus       278 iLe~~-~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn------Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn  350 (403)
T 3fga_B          278 ILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN------NEYIMSLISDNAAKILPIMFPSLYRNSKTHWN  350 (403)
T ss_dssp             HHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG------CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSC
T ss_pred             HHHhC-CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc------cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccC
Confidence            44433 112222 23456777778888888888887765541      1111112211   2344444333     3347


Q ss_pred             hhHHHHHHHHHHHhhcCCh
Q psy9169         300 TTILTAALRTVGNIATGND  318 (440)
Q Consensus       300 ~~v~~~al~~L~nl~~~~~  318 (440)
                      ..++..|..++.-+...++
T Consensus       351 ~~v~~l~~~vlk~l~e~d~  369 (403)
T 3fga_B          351 KTIHGLIYNALKLFMEMNQ  369 (403)
T ss_dssp             HHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHhCH
Confidence            7888888888887765543

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=88.50  E-value=18  Score=34.58  Aligned_cols=225  Identities=12%  Similarity=0.138  Sum_probs=124.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCC-----c
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT-----S  149 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~-----~  149 (440)
                      +..|+.++.|.|+..|...-..+..+-..-.  ....++...+-..+..++ ......-..+.+.+|+.|..|-     +
T Consensus       164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~--~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe  241 (449)
T 2npp_B          164 VLQLLELFDSEDPRERDFLKTTLHRIYGKFL--GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE  241 (449)
T ss_dssp             HHHHHHTTTSSTHHHHHHHHHHHHHHHHSCT--TTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence            5678888889999888888788877754432  234455555566677777 5455555668888999887763     3


Q ss_pred             HHHHHHHhcCCHHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         150 EQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       150 ~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      +++..+     ...|+.|.+... ...-.+...++..+...++..-..+     +..|++.=-... ..-..-.+.-|..
T Consensus       242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tn-s~KevlFL~elee  310 (449)
T 2npp_B          242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTH-SPKEVMFLNELEE  310 (449)
T ss_dssp             HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSC-HHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCC-chHHHHHHHHHHH
Confidence            333332     344555555544 2223345555555554444442222     222222221111 2212222333344


Q ss_pred             hhhCCCCCCCHH-HHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHh---cCChHHHHHhcc-----CCC
Q psy9169         229 LCRNKNPAPDFE-KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD---TGVVPRLVELLD-----SEE  299 (440)
Q Consensus       229 l~~~~~~~~~~~-~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~---~g~~~~Lv~lL~-----~~~  299 (440)
                      +...- +..++. ....++..+..++.+.+-.|...|+....+      +.+-.++.   ..++|.+...|.     |-+
T Consensus       311 ile~~-~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N------~~i~~li~~n~~~IlPii~p~L~~~s~~HWn  383 (449)
T 2npp_B          311 ILDVI-EPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN------EYIMSLISDNAAKILPIMFPSLYRNSKTHWN  383 (449)
T ss_dssp             HHTTC-CHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC------HHHHHHHHTTHHHHHHHHHHHHTSCTTCCSS
T ss_pred             HHHhC-CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC------HHHHHHHHhchhhhHHhhHHHHHHHHHHhcC
Confidence            44333 222222 335677778888889888888887654421      11111111   124566665542     336


Q ss_pred             hhHHHHHHHHHHHhhcCChHH
Q psy9169         300 TTILTAALRTVGNIATGNDHQ  320 (440)
Q Consensus       300 ~~v~~~al~~L~nl~~~~~~~  320 (440)
                      ..++..|..++.-+...++..
T Consensus       384 ~~V~~la~~vlk~l~e~d~~l  404 (449)
T 2npp_B          384 KTIHGLIYNALKLFMEMNQKL  404 (449)
T ss_dssp             TTHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCHHH
Confidence            789999999988877766643

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=87.10  E-value=9.7  Score=41.70  Aligned_cols=210  Identities=11%  Similarity=0.025  Sum_probs=121.9

Q ss_pred             CChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----CchhHHHHHhcC
Q psy9169         129 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGD-----GARARDLLLGLG  201 (440)
Q Consensus       129 ~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL--~~~~~~v~~~a~~~L~nl~~~-----~~~~r~~i~~~g  201 (440)
                      .++..|.+|-..|.++-..          ..+...+...|  .+.+..+|..|+..|.|....     .++.+..+ ...
T Consensus        25 ~~~~~r~~Ae~~L~~~~~~----------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r~~   93 (1204)
T 3a6p_A           25 STQRYRLEALKFCEEFKEK----------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-KNS   93 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHH----------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-HHH
T ss_pred             CChHHHHHHHHHHHHHHhC----------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-HHH
Confidence            4667788888777776432          12444444444  345688999999999887632     23333333 333


Q ss_pred             ChHHHHhhhCCC--CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC-----
Q psy9169         202 TMPQILALVQPN--TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG-----  274 (440)
Q Consensus       202 ~i~~L~~ll~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~-----  274 (440)
                      ++..+.......  .+..++..++.++..++...-+.    ....+++.|+.++.. ++.....++.+|..++..     
T Consensus        94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~  168 (1204)
T 3a6p_A           94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ  168 (1204)
T ss_dssp             HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence            444444432211  34678888899999988664221    135688888888866 455677788888877642     


Q ss_pred             --ChhhHH----HHHhc--CChHHHHHhccC-------------------CChhHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy9169         275 --HNDKIQ----AVVDT--GVVPRLVELLDS-------------------EETTILTAALRTVGNIATGNDHQTDCVIQA  327 (440)
Q Consensus       275 --~~~~~~----~l~~~--g~~~~Lv~lL~~-------------------~~~~v~~~al~~L~nl~~~~~~~~~~l~~~  327 (440)
                        ...+..    .+.+.  .+++.+..+|..                   .+..+...++.++.+...--+  ...+.+.
T Consensus       169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~  246 (1204)
T 3a6p_A          169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAE  246 (1204)
T ss_dssp             CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhc
Confidence              111111    11111  223333333322                   123466778888876654333  1233343


Q ss_pred             C--CHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         328 G--GLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       328 g--~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      .  +++.+..++.  ++.++..|+-+|..|+..
T Consensus       247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~  277 (1204)
T 3a6p_A          247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSR  277 (1204)
T ss_dssp             TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTC
T ss_pred             cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhC
Confidence            3  6777776665  467889999999999864

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=86.75  E-value=22  Score=33.86  Aligned_cols=243  Identities=12%  Similarity=0.126  Sum_probs=121.7

Q ss_pred             cHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         149 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       149 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      +......++...+..|+.++.++++.-|+..-.+|..|-+.-...|..+... +-..+.+.+.......-....+..++.
T Consensus       152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS  230 (449)
T 2npp_B          152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS  230 (449)
T ss_dssp             STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence            3334555666788899999999999888888888877765433444333321 223344444332222334456667777


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHH-HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL  307 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~-~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al  307 (440)
                      +..+-..+.......-+...|+.|.....-..- .....++..+...++.....+     +..|++.=-..+..-...-+
T Consensus       231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL  305 (449)
T 2npp_B          231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL  305 (449)
T ss_dssp             HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHH
Confidence            776653333333233334455555554432222 233344444444444332221     22232222112222222233


Q ss_pred             HHHHHhhcC-ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH-----HhcCChHHHHHHhhcCcchHHHHHHHH
Q psy9169         308 RTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN-----ITAGNSRQIDHVIQEGELNQMALLVEE  381 (440)
Q Consensus       308 ~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~n-----l~~~~~~~~~~~i~~~~~~~~~~~l~~  381 (440)
                      .-|..+... .+...+.+.. .+...+...+.+++..|.+.|+....|     +...+...+-.+            +  
T Consensus       306 ~eleeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPi------------i--  370 (449)
T 2npp_B          306 NELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPI------------M--  370 (449)
T ss_dssp             HHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHH------------H--
T ss_pred             HHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHh------------h--
Confidence            444455432 2333332322 366777778888877777776654432     222221111111            1  


Q ss_pred             cCcHHHHHH-HhcCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         382 SGGLEKLEA-LQHHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       382 ~g~l~~l~~-L~~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                         .+.|.. ...|=|+.|+..|..++..+.+-++
T Consensus       371 ---~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~  402 (449)
T 2npp_B          371 ---FPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ  402 (449)
T ss_dssp             ---HHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred             ---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCH
Confidence               122322 2445578888888888877765444

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=84.69  E-value=20  Score=31.41  Aligned_cols=138  Identities=9%  Similarity=0.072  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHh
Q psy9169         259 ETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL  337 (440)
Q Consensus       259 ~i~~~a~~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll  337 (440)
                      +.....+.-...+.-. ++...     ..+++.++.+-.+++.+++...+.+|...+...++...     .+++.|..++
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll   99 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL   99 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            4666666666665433 33322     24477778877777889999999999988865554433     3567788888


Q ss_pred             cCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcc----hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         338 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       338 ~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~----~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                      .+.++.+.+.+..+..++-.   -..+.+...+..    +.....+.+  .-+.|..+..+.|..|+-.|.+.++++-
T Consensus       100 ~d~d~~V~K~~I~~~~~iY~---~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          100 RDNSAQVIKRVIQACGSIYK---NGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TCSCHHHHHHHHHHHHHHHH---HHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHH---HHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            88888898888887777642   222233322211    122223322  2455667788899999999999999864

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=81.75  E-value=34  Score=31.92  Aligned_cols=137  Identities=9%  Similarity=0.112  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhc
Q psy9169         260 TLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS  338 (440)
Q Consensus       260 i~~~a~~~L~~l~~~-~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~  338 (440)
                      .+...+.-+..|.-+ ++.     +=..+++.++.+-.+++.+++...+.+|...+....+...     .+++.|..++.
T Consensus        41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~  110 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLR  110 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHc
Confidence            455555555554432 222     1146789999998888899999999999988875554432     35677888888


Q ss_pred             CCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcc----hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         339 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       339 ~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~----~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                      +.++.+.+.+..+..++-   +-..+.+...+..    +.....+.+.  -+.|..+..+.|..|+-.|.+.++++-
T Consensus       111 d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          111 DENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAM--AGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             CSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHH--HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHH--HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            888899888888877764   2223333332211    2233333322  355666788899999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	440
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-69
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-12
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-45
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-26
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-29
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-22
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-11
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-08
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-17
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-09
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-08
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-07
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	3e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	6e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.003
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.004

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  227 bits (578), Expect = 1e-69
 Identities = 177/380 (46%), Positives = 238/380 (62%), Gaps = 8/380 (2%)

Query: 10  RKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDE-----IEEENVTV 63
           R+ +FKN G+ S DE+RR+R    VELRKA +D+ L KRRN     +      E+E+   
Sbjct: 6   RRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVS 65

Query: 64  IEPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICV 123
            +    S ++  +P+M + + S + + ++ AT   R++LS+E  PPID +I+AGVVP  V
Sbjct: 66  ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 125

Query: 124 EL-LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 182
           E   +++    Q EA WALTNIASGTS QT  V++A+A+P F+QLL +  + + EQA WA
Sbjct: 126 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 185

Query: 183 LGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 242
           LGN+AGD    RD +L    M  IL L   N P+  +R   W +SNLCR K P PD+  +
Sbjct: 186 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVV 244

Query: 243 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 302
              LP L +LI++ D ETL D CWA+SY+SDG  + IQAV+D  +  RLVELL  E T +
Sbjct: 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 304

Query: 303 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 362
            T ALR VGNI TGND QT  VI AG L  ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 305 QTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ 364

Query: 363 IDHVIQEGELNQMALLVEES 382
           I  VI    +  +  L+E +
Sbjct: 365 IQAVIDANLIPPLVKLLEVA 384

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (160), Expect = 2e-12
 Identities = 53/259 (20%), Positives = 104/259 (40%), Gaps = 1/259 (0%)

Query: 148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI-AGDGARARDLLLGLGTMPQI 206
           +++Q         +P+  Q L+S  +     AT     I + +     D+++  G +P++
Sbjct: 65  SADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRL 124

Query: 207 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICW 266
           +  ++ N P        WA++N+    +           +PL  QL++T  VE      W
Sbjct: 125 VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIW 184

Query: 267 ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 326
           AL  ++    D    V+    +  ++ L +S + +++  A  T+ N+  G   Q D  + 
Sbjct: 185 ALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV 244

Query: 327 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLE 386
           +  L  + KL+ S     + +A W IS ++ G    I  VI      ++  L+     L 
Sbjct: 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV 304

Query: 387 KLEALQHHENETVYQKCYK 405
           +  AL+   N         
Sbjct: 305 QTPALRAVGNIVTGNDLQT 323

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 4/167 (2%)

Query: 68  CMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD 127
             + I + +P+ +  + S    +       A   +          +I AGV+P    LL 
Sbjct: 281 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 340

Query: 128 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
               N + EA W ++NI +G +EQ   VI+AN IP  ++LL        ++A WA+ N +
Sbjct: 341 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 400

Query: 188 GDGARARD---LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 231
             G +  D    L+  G +  +  L++       +   + A+ N+ +
Sbjct: 401 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI-IEVTLDALENILK 446

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  159 bits (403), Expect = 5e-45
 Identities = 152/328 (46%), Positives = 218/328 (66%), Gaps = 5/328 (1%)

Query: 69  MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-D 127
              +  +V ++++G+ S+N + ++ AT++ARK+LS+E+ PPID +I AG++P  V  L  
Sbjct: 8   QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK 67

Query: 128 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
            +    QFE+ WALTNIASGTSEQT  V++  AIP F+ LL+SPH +++EQA WALGNIA
Sbjct: 68  TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 127

Query: 188 GDGARARDLLLGLGTMPQILALVQ----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK 243
           GDG+  RDL++  G +  +LAL+           +LRN+ W +SNLCRNKNPAP  + ++
Sbjct: 128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 187

Query: 244 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTIL 303
             LP L +L+H  D E L+D CWA+SY++DG N++I+ VV  GVVP+LV+LL + E  I+
Sbjct: 188 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV 247

Query: 304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 363
           T ALR +GNI TG D QT  VI AG L     LL++ + NI KEA WT+SNITAG   QI
Sbjct: 248 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQI 307

Query: 364 DHVIQEGELNQMALLVEESGGLEKLEAL 391
             V+  G +  +  ++ ++    + EA 
Sbjct: 308 QQVVNHGLVPFLVGVLSKADFKTQKEAA 335

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (268), Expect = 3e-26
 Identities = 79/354 (22%), Positives = 147/354 (41%), Gaps = 15/354 (4%)

Query: 65  EPTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVE 124
           E T        +P  I  + S +  +   A   A   ++ +     D +I+ G +   + 
Sbjct: 90  EQTKAVVDGGAIPAFISLLASPHAHISEQAVW-ALGNIAGDGSAFRDLVIKHGAIDPLLA 148

Query: 125 LLDDENPNT-----QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQA 179
           LL   + +T         TW L+N+    +           +P  ++LL      +   +
Sbjct: 149 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 208

Query: 180 TWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 239
            WA+  +        ++++  G +PQ++  +   T    +   + AI N+    +     
Sbjct: 209 CWAISYLTDGPNERIEMVVKKGVVPQLVK-LLGATELPIVTPALRAIGNIVTGTDEQTQK 267

Query: 240 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE 299
                 L +   L+         +  W +S I+ G  D+IQ VV+ G+VP LV +L   +
Sbjct: 268 VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 327

Query: 300 TTILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 358
                 A   + N  + G   Q   ++  G ++ +  LLS+    I++     ISNI   
Sbjct: 328 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI--- 384

Query: 359 NSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 412
                    + GE  ++++++EE GGL+K+EALQ HENE+VY+    +I   F+
Sbjct: 385 ----FQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 434

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 4e-29
 Identities = 39/327 (11%), Positives = 84/327 (25%), Gaps = 28/327 (8%)

Query: 119 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 178
           +P  V+ L  ++   Q    + + +           V     I K + LL SP+ N+ + 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 179 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 238
           A  AL N+       +        + + ++L++        + +   + NL        +
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 239 F--------------EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 284
                               C    N      D E   +    L  +S     +      
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 285 TGVVPRLVELLDSEETTIL--------------TAALRTVGNIATGNDHQTDCVIQAGGL 330
           +G++  L+  + +                      + R    + T           A   
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 331 QKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEA 390
           +      S+    ++             N +    +     +     L+ +S     LEA
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303

Query: 391 LQHHENETVYQKCYKIISMAFNDSAEN 417
                      K      M+     + 
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKE 330

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.7 bits (236), Expect = 5e-22
 Identities = 47/378 (12%), Positives = 109/378 (28%), Gaps = 37/378 (9%)

Query: 74  MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT 133
           +T+P+ ++ + S + K + I      +    +      ++ + G +   V+LL   N N 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAY-YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60

Query: 134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGAR 192
           Q  A  AL N+   ++   +     N I + + LL    +  + +Q T  L N++     
Sbjct: 61  QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 193 ARDLLLG-------------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 239
             +L+                G       + +         N    + NL          
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180

Query: 240 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK--------------IQAVVDT 285
                 +  L   +      +  D     + +   HN                     + 
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240

Query: 286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 345
                      ++   ++             N   +  +  +  ++    L+  S+ +  
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300

Query: 346 KEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 405
            EA          +   +   +         L+  +  GL ++  L    N  V +    
Sbjct: 301 LEACAGALQNLTASKGLMSSGMS-------QLIGLKEKGLPQIARLLQSGNSDVVRSGAS 353

Query: 406 IIS-MAFNDSAENSIENG 422
           ++S M+ +      + N 
Sbjct: 354 LLSNMSRHPLLHRVMGNQ 371

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 1e-11
 Identities = 41/276 (14%), Positives = 80/276 (28%), Gaps = 20/276 (7%)

Query: 85  SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNI 144
            +  +     +     +++  ++       +   V  C+ +L + +     E        
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY--- 230

Query: 145 ASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMP 204
                +      NA          S+    +                +    L     + 
Sbjct: 231 ----RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIR 286

Query: 205 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTDVE 259
             L L+  +     L     A+ NL  +K          I      LP + +L+ + + +
Sbjct: 287 TYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSD 346

Query: 260 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET------TILTAALRTVGNI 313
            +      LS +S   +  +  V+   V P +  LL S          IL++A  TV N+
Sbjct: 347 VVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404

Query: 314 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
                        +  L  +  L  SS      EAA
Sbjct: 405 MASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 1e-10
 Identities = 47/356 (13%), Positives = 103/356 (28%), Gaps = 45/356 (12%)

Query: 85  SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNI 144
           SS  +++      A  +L+     P     +           +  +P   F AT  L N+
Sbjct: 115 SSTDELKEELIADALPVLADRVIIPFSGWCDG----NSNMSREVVDPEVFFNATGCLRNL 170

Query: 145 ASGTSEQTMTVINANAIPKFLQLLSS------PHLNLAEQATWALGNIAGDGARARDLLL 198
           +S  + +      +  I   +  + +            E     L N++           
Sbjct: 171 SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230

Query: 199 GLGTMPQILALVQPNTPTTF--------LRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 250
                    A  + ++   F          N    +     N   +            LN
Sbjct: 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290

Query: 251 QLIHTTDVETLSDICWALSYISDGHNDKIQA-----VVDTGVVPRLVELLDSEETTILTA 305
            +  +    TL     AL  ++               +    +P++  LL S  + ++ +
Sbjct: 291 LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS 350

Query: 306 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN------IVKEAAWTISNITAGN 359
               + N++         V+      ++ +LL+S   N      I+  A +T+ N+ A  
Sbjct: 351 GASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408

Query: 360 SRQIDHVIQEGELNQMALLVEESGGLEKLEAL-QHHENETVYQKCYKIISMAFNDS 414
                         Q+A     S  L  +  L +   +    +    ++S  ++  
Sbjct: 409 P-------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 3e-08
 Identities = 23/171 (13%), Positives = 53/171 (30%), Gaps = 13/171 (7%)

Query: 75  TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDE-----LIEAGVVPICVELLDDE 129
            +   +  M  S     + A   A + L+  +            ++   +P    LL   
Sbjct: 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG 343

Query: 130 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN------LAEQATWAL 183
           N +        L+N++         V+     P+  +LL+S   N      +   A + +
Sbjct: 344 NSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401

Query: 184 GNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 234
            N+     +          +  I+ L + +            +S++  +K 
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 5e-17
 Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 7/237 (2%)

Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL-QLL 168
              ++   + P   E     +   +  A   L ++     +        + +   + + L
Sbjct: 10  CLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYL 68

Query: 169 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 228
            +    L  +A   +G  + + A  ++ +LGLG + ++L L+  +   T     ++AIS 
Sbjct: 69  EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 128

Query: 229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 288
           L R +              +L + +     +      + L  +  GH +    +   G+V
Sbjct: 129 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 188

Query: 289 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG-----GLQKMKKLLSSS 340
            +LV L+ +E +      L  + ++ T          +        L+   +LL   
Sbjct: 189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 16/125 (12%), Positives = 46/125 (36%), Gaps = 1/125 (0%)

Query: 83  MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALT 142
            + +   +R+ A  +    L +E+   + + +      + +  +  +    + ++ + L 
Sbjct: 111 DRDACDTVRVKALFA-ISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQ 169

Query: 143 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT 202
           N+  G  E   T+ +   + + + L+ + H    E    AL ++  D  +          
Sbjct: 170 NLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL 229

Query: 203 MPQIL 207
             + L
Sbjct: 230 GLEEL 234

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (169), Expect = 2e-13
 Identities = 38/273 (13%), Positives = 91/273 (33%), Gaps = 4/273 (1%)

Query: 140 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 199
           A+ N+    + Q    +   AIP+  +LL+     +  +A   +  ++   A    ++  
Sbjct: 1   AVVNL---INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 200 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 259
              +  I+  +Q        R     + NL  ++       K    +P L +++ +    
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG-IPALVKMLGSPVDS 116

Query: 260 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 319
            L      L  +         AV   G + ++V LL+      L      +  +A GN  
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176

Query: 320 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLV 379
               ++ +GG Q +  ++ +     +      +  + +  S     +++ G +  + L +
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 380 EESGGLEKLEALQHHENETVYQKCYKIISMAFN 412
            +         L    N +      + +     
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLG 269

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 2e-13
 Identities = 38/256 (14%), Positives = 103/256 (40%), Gaps = 3/256 (1%)

Query: 111 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 170
           D  +    +P   +LL+DE+     +A   +  ++   + +   + +   +   ++ + +
Sbjct: 11  DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 171 P-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 229
              +  A      L N++         +   G +P ++ ++     +  L   +  + NL
Sbjct: 71  TNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITTLHNL 128

Query: 230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 289
             ++  A    ++   L  +  L++ T+V+ L+     L  ++ G+ +    ++ +G   
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188

Query: 290 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 349
            LV ++ +     L      V  + +        +++AGG+Q +   L+     +V+   
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248

Query: 350 WTISNITAGNSRQIDH 365
           WT+ N++   ++Q   
Sbjct: 249 WTLRNLSDAATKQEGM 264

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 5e-13
 Identities = 36/249 (14%), Positives = 75/249 (30%), Gaps = 23/249 (9%)

Query: 66  PTCMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVEL 125
              +  I+  V  ++      +     I          +E     + +     +P+ V+L
Sbjct: 304 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 363

Query: 126 LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGN 185
           L   +     +AT  L    +        +    AIP+ +QLL   H +   + +     
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 186 IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC 245
                                   V+       +     A+  L R+ +       +   
Sbjct: 424 ---------------------QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN-T 461

Query: 246 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 305
           +PL  QL+++            L  ++    +  +A+   G    L ELL S    + T 
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATY 520

Query: 306 ALRTVGNIA 314
           A   +  ++
Sbjct: 521 AAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (164), Expect = 7e-13
 Identities = 58/357 (16%), Positives = 131/357 (36%), Gaps = 12/357 (3%)

Query: 23  EMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEG 82
           E+  +      +L     +DQ+   +    + ++ ++  +         +   V  ++  
Sbjct: 13  ELATRAIPELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM---VSAIVRT 67

Query: 83  MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALT 142
           M+++N       T      LS  R   +  + ++G +P  V++L     +  F A   L 
Sbjct: 68  MQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126

Query: 143 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT 202
           N+        M V  A  + K + LL+  ++      T  L  +A     ++ ++L  G 
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186

Query: 203 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLS 262
              ++ +++  T    L      +  L    +  P   +      L   L   +      
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV-Q 245

Query: 263 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 322
           +  W L  +SD    +       G++  LV+LL S++  ++T A   + N+   N     
Sbjct: 246 NCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 302

Query: 323 CVIQAGGLQKMKKLL--SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMAL 377
            V Q GG++ + + +  +  R +I + A   + ++T+ +               + +
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (138), Expect = 1e-09
 Identities = 53/367 (14%), Positives = 115/367 (31%), Gaps = 44/367 (11%)

Query: 68  CMSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD 127
            +  +    P+ +  +  +    +++ T S    +          ++EAG +      L 
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 128 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
           D +        W L N++   ++Q         +   +QLL S  +N+   A   L N+ 
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 188 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC-- 245
            +  + + ++  +G +  ++  V        +            +++   +  +  +   
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354

Query: 246 --LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS------ 297
             LP++ +L+H      L      L             + + G +PRLV+LL        
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 414

Query: 298 ----------------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR 341
                               I+      +  +A    ++   +     +    +LL S  
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPI 473

Query: 342 VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQ 401
            NI + AA  +  +                  + A  +E  G    L  L H  NE V  
Sbjct: 474 ENIQRVAAGVLCELAQD--------------KEAAEAIEAEGATAPLTELLHSRNEGVAT 519

Query: 402 KCYKIIS 408
               ++ 
Sbjct: 520 YAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 5e-09
 Identities = 43/361 (11%), Positives = 103/361 (28%), Gaps = 35/361 (9%)

Query: 21  FDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMI 80
              +          +                ++ ++     +       +     +   +
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236

Query: 81  EGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWA 140
                   +  +   R+     +K+           G++   V+LL  ++ N    A   
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEG-------MEGLLGTLVQLLGSDDINVVTCAAGI 289

Query: 141 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN-----LAEQATWALGNIAGDGARARD 195
           L+N+     +  M V     I   ++ +            A  A   L +   +   A++
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349

Query: 196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 255
            +     +P ++ L+ P +    ++  V  I NL           +      L+  L+  
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA 409

Query: 256 TD---------------------VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 294
                                   E +     AL  ++   +++   +     +P  V+L
Sbjct: 410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQL 468

Query: 295 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 354
           L S    I   A   +  +A   +   + +   G    + +LL S    +   AA  +  
Sbjct: 469 LYSPIENIQRVAAGVLCELAQDKEAA-EAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527

Query: 355 I 355
           +
Sbjct: 528 M 528

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (142), Expect = 6e-10
 Identities = 42/310 (13%), Positives = 101/310 (32%), Gaps = 48/310 (15%)

Query: 74  MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT 133
             +  ++E M SS+   R +AT      L K+    +D+  E  VV + ++LL+D+N   
Sbjct: 3   YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDKNGEV 61

Query: 134 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 193
           Q  A   L  + S   E  +  I    +      + S    L + ++  L  +       
Sbjct: 62  QNLAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTV------- 110

Query: 194 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 253
                       I  L   ++ +    N+   I+                    L + + 
Sbjct: 111 ------------IGELPPASSGSALAANVCKKITGR------------------LTSAIA 140

Query: 254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 313
              DV    +    ++ +       +     + ++  L+  L S    +    +  +G++
Sbjct: 141 KQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHL 199

Query: 314 ATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGEL 372
                +     +I+      + +L  +  ++  +     I+ I+     +I   +++   
Sbjct: 200 VMSCGNIVFVDLIE----HLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 255

Query: 373 NQMALLVEES 382
             +     + 
Sbjct: 256 LVVKFCNVDD 265

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 43/316 (13%), Positives = 91/316 (28%), Gaps = 31/316 (9%)

Query: 23   EMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIEG 82
             + +    +  EL    +   L        LD  +   VT         +   +   +  
Sbjct: 723  SLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS 782

Query: 83   MKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALT 142
               S       +  S  K ++        E        I          + +  A  +L 
Sbjct: 783  --QSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLG 840

Query: 143  NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-------------GD 189
             +                    L+  SSP   +   A++ALG+I+               
Sbjct: 841  EVGH----HIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEI 896

Query: 190  GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP------APDFEKI- 242
             ++ +   L L ++ +I++         ++ NI   +   C           A    K+ 
Sbjct: 897  TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT 956

Query: 243  ----KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 298
                +  LP L   + +      S +  A+ +    H   I  ++    +   ++ L+  
Sbjct: 957  LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL-KNCIGDFLKTLEDP 1015

Query: 299  ETTILTAALRTVGNIA 314
            +  +   AL T  + A
Sbjct: 1016 DLNVRRVALVTFNSAA 1031

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 6/168 (3%)

Query: 22  DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPT--CMSPIKMTVPEM 79
           DE+  +  E    +     D  +      +Q    E  +    +     + PI       
Sbjct: 272 DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 331

Query: 80  IEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATW 139
            +     +      A      +L+      I   +    +P   E + + +   +  A  
Sbjct: 332 QDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHV----LPFIKEHIKNPDWRYRDAAVM 387

Query: 140 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
           A   I  G     +  +   A+P  ++L+  P + + + A W +G I 
Sbjct: 388 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 435

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 4e-08
 Identities = 40/318 (12%), Positives = 88/318 (27%), Gaps = 24/318 (7%)

Query: 22  DEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEIEEENVTVIEPTCMSPIKMTVPEMIE 81
           +    +  E+  +L     +    +      L+ I      +            +  +I+
Sbjct: 119 EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQ 178

Query: 82  GMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATW 139
           GM+    +  +++ AT +    L   +     E     ++ +  E     +   +  A  
Sbjct: 179 GMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 238

Query: 140 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 199
            L  I S   +   T +        ++ + S    +A Q      N+  +          
Sbjct: 239 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 298

Query: 200 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-------------------- 239
                +             L+ +V  ++     ++   D                     
Sbjct: 299 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 358

Query: 240 --EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 297
             + +   LP + + I   D         A   I +G        +    +P L+EL+  
Sbjct: 359 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 418

Query: 298 EETTILTAALRTVGNIAT 315
               +   A  TVG I  
Sbjct: 419 PSVVVRDTAAWTVGRICE 436

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 18/248 (7%), Positives = 50/248 (20%), Gaps = 24/248 (9%)

Query: 73  KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPN 132
           K+   E+   +   N   R+ + R  +    ++             V + +E   D+N  
Sbjct: 18  KLNDDELFRLLDDHNSLKRISSARVLQLRGGQD------------AVRLAIEFCSDKNYI 65

Query: 133 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 192
            +    + L  I      +                L+     +   A  +          
Sbjct: 66  RRDIGAFILGQIKICKKCEDNVF-----NILNNMALNDKSACVRATAIESTAQRCKKNPI 120

Query: 193 ARD-----LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 247
                     +        +        +         +                   + 
Sbjct: 121 YSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAIN 180

Query: 248 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 307
           +            +  +      +       +    D  V+  L + L      +    +
Sbjct: 181 INKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDII 238

Query: 308 RTVGNIAT 315
              G +  
Sbjct: 239 EAAGELGD 246

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 6e-05
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 7/112 (6%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +P+++      N   RM        +          ++    ++P  + +  D   N +F
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCG----QDITTKHMLPTVLRMAGDPVANVRF 537

Query: 136 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 187
               +L  I       T   + +   P   +L     +++   A  AL  ++
Sbjct: 538 NVAKSLQKIGPILDNST---LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 32/246 (13%), Positives = 80/246 (32%), Gaps = 27/246 (10%)

Query: 79  MIEGMKSSNPKMRMIATRSARKM---LSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +I+ +++ + ++R+ + +    +   L  ER     EL+     P   + + DE+     
Sbjct: 15  LIDELRNEDVQLRLNSIKKLSTIALALGVERT--RSELL-----PFLTDTIYDEDE-VLL 66

Query: 136 EATWALTNIAS-GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 194
                L    +     + +  +    +P    L +     + ++A  +L  I+ +     
Sbjct: 67  ALAEQLGTFTTLVGGPEYVHCL----LPPLESLATVEETVVRDKAVESLRAISHE-HSPS 121

Query: 195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 254
           DL      +P +  L   +  T+        + ++C  +  +    ++         L  
Sbjct: 122 DLEAHF--VPLVKRLAGGDWFTSRT--SACGLFSVCYPRVSSAVKAEL---RQYFRNLCS 174

Query: 255 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 314
                        L   +          V + ++P    L   E+ ++   A+    NIA
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231

Query: 315 TGNDHQ 320
                +
Sbjct: 232 QLLPQE 237

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 76  VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQF 135
           +P ++         +R    +S +K+     +  +   ++    PI  +L  D++ + ++
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVK----PILEKLTQDQDVDVKY 576

Query: 136 EATWALTNIASG 147
            A  ALT ++  
Sbjct: 577 FAQEALTVLSLA 588

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 21/166 (12%)

Query: 110 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 169
              +  + ++ +  + + D+ P  +  +   L ++     +     I  + +P     L+
Sbjct: 658 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLN 716

Query: 170 SPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAIS 227
              +++   ATWA+G I+   G   +  +  +  + Q++ ++  PNTP T L N    I 
Sbjct: 717 PEFISVCNNATWAIGEISIQMGIEMQPYIPMV--LHQLVEIINRPNTPKTLLENTAITIG 774

Query: 228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 273
            L     P           P+L Q I           C +L  I D
Sbjct: 775 RLGY-VCPQ-------EVAPMLQQFIRP--------WCTSLRNIRD 804

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	440
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.96
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.49
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.42
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.36
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.36
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.36
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.17
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.13
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.04
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.95
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.93
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.91
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.9
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.72
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.7
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.65
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.55
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.49
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.47
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.39
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.5
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.69
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.05
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.3
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.27
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.89
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	94.84
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.83
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	94.24
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	83.65

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-57  Score=456.57  Aligned_cols=411  Identities=46%  Similarity=0.730  Sum_probs=354.1

Q ss_pred             hhhHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHhhhhHHHHhhccccccccc--hhhhcccc---CCCCCCcccCCHHH
Q psy9169           5 VAAIDRKASFKNAGK-SFDEMRRKRCEMNVELRKAHKDDQLFKRRNIDQLDEI--EEENVTVI---EPTCMSPIKMTVPE   78 (440)
Q Consensus         5 ~~~~~r~~~~k~~~~-~~~~~r~~R~~~~~~lRk~kr~~~l~krR~~~~~~~~--~~~~~~~~---~~~~~~~~~~~i~~   78 (440)
                      |+|++|++.||++|+ |++|+||||+++.+||||+||+++|+|||+.......  ++......   ...........++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   80 (503)
T d1wa5b_           1 FVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ   80 (503)
T ss_dssp             CCCGGGCC-----------CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHH
T ss_pred             CCchHHhHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHH
Confidence            789999999999998 9999999999999999999999999999987542111  11111000   00112234578999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHh
Q psy9169          79 MIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN  157 (440)
Q Consensus        79 lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~  157 (440)
                      ++..+.|++...++.|+..++++++...+++++.+++.|++|.|+.+| .+.++.++..|+|+|+|++.+++..+..+.+
T Consensus        81 ~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~  160 (503)
T d1wa5b_          81 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD  160 (503)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999888878899999999999999999 4667889999999999999999999999999


Q ss_pred             cCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC
Q psy9169         158 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP  237 (440)
Q Consensus       158 ~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~  237 (440)
                      .|+++.++.+|.+++.++++.|+|+|+||+.+++..|+.+...|++++|+.++.+.. ..+++.++|+|.+++.+..+..
T Consensus       161 ~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~-~~~~~~~~~~l~nl~~~~~~~~  239 (503)
T d1wa5b_         161 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQP  239 (503)
T ss_dssp             TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCC-HHHHHHHHHHHHHHhcCCccch
Confidence            999999999999999999999999999999999999999999999999999998777 7899999999999999887778


Q ss_pred             CHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC
Q psy9169         238 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN  317 (440)
Q Consensus       238 ~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~  317 (440)
                      ......+++|.++.++.+.|++++..++|+|.+++...++....+++.|+++.++.++.+++..++.+|+.+++|++.++
T Consensus       240 ~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh-----------------------------
Q psy9169         318 DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-----------------------------  368 (440)
Q Consensus       318 ~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~-----------------------------  368 (440)
                      +..+..+++.|+++.|..++.++++.++++++|+|+|++++++.++..+++                             
T Consensus       320 ~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         320 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988888776                             


Q ss_pred             -----------------------------------------------c---------CcchHHHHHHHHcCcHHHHHHHh
Q psy9169         369 -----------------------------------------------E---------GELNQMALLVEESGGLEKLEALQ  392 (440)
Q Consensus       369 -----------------------------------------------~---------~~~~~~~~~l~~~g~l~~l~~L~  392 (440)
                                                                     .         ...+.+...++++||+++|+.|+
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq  479 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ  479 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGG
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHH
Confidence                                                           0         01245667899999999999999


Q ss_pred             cCCcHHHHHHHHHHHHhhCCCCcc
Q psy9169         393 HHENETVYQKCYKIISMAFNDSAE  416 (440)
Q Consensus       393 ~~~~~~v~~~a~~il~~~~~~~~~  416 (440)
                      .|++++|+++|.+||++||++|+|
T Consensus       480 ~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         480 QNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             GCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             cCCCHHHHHHHHHHHHHHcCCcCC
Confidence            999999999999999999987654

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-40  Score=321.79  Aligned_cols=344  Identities=49%  Similarity=0.861  Sum_probs=315.9

Q ss_pred             CCcccCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCC
Q psy9169          69 MSPIKMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASG  147 (440)
Q Consensus        69 ~~~~~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~  147 (440)
                      +.....+++.+++.|+|++++.|..|+..++++++...+++++.+++.|++|.|+++| +++++++|..|+|+|++++.+
T Consensus         8 ~~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~   87 (434)
T d1q1sc_           8 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG   87 (434)
T ss_dssp             TSSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTS
T ss_pred             cchhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence            4456789999999999999999999999999999888777889999999999999999 556789999999999999999


Q ss_pred             CcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCc----HHHHHHHH
Q psy9169         148 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP----TTFLRNIV  223 (440)
Q Consensus       148 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~----~~~~~~a~  223 (440)
                      +++.+..+++.|+++.|+.+|.+++.++++.|+|+|+|++.+++..+..+...|+++.|+.++.....    ....+.++
T Consensus        88 ~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  167 (434)
T d1q1sc_          88 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT  167 (434)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHH
T ss_pred             ChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999986542    45678899


Q ss_pred             HHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHH
Q psy9169         224 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTIL  303 (440)
Q Consensus       224 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~  303 (440)
                      |++.+++.+...........+++|.+..++.+++++++..++|++.+++..+++....+.+.|+++.|++++.+++..++
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~  247 (434)
T d1q1sc_         168 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIV  247 (434)
T ss_dssp             HHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHH
T ss_pred             HHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhh
Confidence            99999999886777777788999999999999999999999999999999988888888999999999999999999999


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh---------------
Q psy9169         304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------  368 (440)
Q Consensus       304 ~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~---------------  368 (440)
                      ..|+++|++++.+++.....+++.|+++.|..++.++++.++..|+|+|+|++.+..+....+.+               
T Consensus       248 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~  327 (434)
T d1q1sc_         248 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  327 (434)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC
T ss_pred             hchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999988777766665               


Q ss_pred             ---------------------------------------------------------------cCcchHHHHHHHHcCcH
Q psy9169         369 ---------------------------------------------------------------EGELNQMALLVEESGGL  385 (440)
Q Consensus       369 ---------------------------------------------------------------~~~~~~~~~~l~~~g~l  385 (440)
                                                                                     .+..+.++..+++.||+
T Consensus       328 ~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~  407 (434)
T d1q1sc_         328 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL  407 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCH
Confidence                                                                           12345678889999999


Q ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhhCC
Q psy9169         386 EKLEALQHHENETVYQKCYKIISMAFN  412 (440)
Q Consensus       386 ~~l~~L~~~~~~~v~~~a~~il~~~~~  412 (440)
                      +.|+.|+.|+|++|++.|.++|++||.
T Consensus       408 ~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         408 DKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7e-30  Score=254.12  Aligned_cols=284  Identities=27%  Similarity=0.370  Sum_probs=256.0

Q ss_pred             cCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHH
Q psy9169          73 KMTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ  151 (440)
Q Consensus        73 ~~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~  151 (440)
                      ...+|.|+..+++ .++.++..|+++|.++.+... .....+++.|+++.|+.+|.+++++++..|+|+|+||+..+++.
T Consensus       118 ~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~-~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         118 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS-AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHH
Confidence            4678999999984 568899999999999976544 44677888999999999998899999999999999999998999


Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                      +..+++.|+++.|+.++.+.+..++..++|+|.|++.............++++.|+.++.+.+ .+++..++|+|.+++.
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d-~~~~~~~~~~l~~l~~  275 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSD  275 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999765555455566789999999998877 8899999999999998


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG  311 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~  311 (440)
                      +...........++++.++.++.+++..+...++.++++++.+.+.....+++.|+++.|..++.++++.++..++|+|+
T Consensus       276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~  355 (503)
T d1wa5b_         276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  355 (503)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            76333344555789999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             HhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         312 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       312 nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      |++.+++.....+++.|+++.++.++.+++..++++|+|+|+|++.+
T Consensus       356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~  402 (503)
T d1wa5b_         356 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  402 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999863

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=9.4e-28  Score=233.49  Aligned_cols=287  Identities=26%  Similarity=0.393  Sum_probs=252.4

Q ss_pred             CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          74 MTVPEMIEGMKS-SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        74 ~~i~~lv~~L~s-~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      ..+|.|+++|++ +++++|..|+++|.++++..+ .....+++.|++|.|+.+|.+++++++..|+|+|+|++.+++..+
T Consensus        56 g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~-~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~  134 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR  134 (434)
T ss_dssp             TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCh-hhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence            579999999974 568899999999999975543 456788999999999999999999999999999999999888989


Q ss_pred             HHHHhcCCHHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHH
Q psy9169         153 MTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS  227 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~-----~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~  227 (440)
                      ..+.+.|+++.|+.++..++     ......++|++.+++.............++++.|..++.+.+ .+++..++|++.
T Consensus       135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~~~~~a~~~l~  213 (434)
T d1q1sc_         135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAIS  213 (434)
T ss_dssp             HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred             HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccc-cchhhhHHhhhc
Confidence            99999999999999998754     356678899999999876655555566778999999998776 899999999999


Q ss_pred             hhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHH
Q psy9169         228 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL  307 (440)
Q Consensus       228 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al  307 (440)
                      +++.............+++|.++.++.++++.++..++++|.+++.+++.....+++.|+++.++.+|.+++++++..|+
T Consensus       214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~  293 (434)
T d1q1sc_         214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  293 (434)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred             ccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHH
Confidence            99977533333334468999999999999999999999999999998888888999999999999999999999999999


Q ss_pred             HHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHH
Q psy9169         308 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQ  362 (440)
Q Consensus       308 ~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~  362 (440)
                      ++|+|++.+.......+.+.|+++.++.++.++++.++..|+|+|+|++.+ +.++
T Consensus       294 ~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~  349 (434)
T d1q1sc_         294 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ  349 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHH
Confidence            999999999998999999999999999999999999999999999999864 4443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-27  Score=235.22  Aligned_cols=325  Identities=17%  Similarity=0.213  Sum_probs=281.0

Q ss_pred             CHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          75 TVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        75 ~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      .++.++..|. +++++++..|+.+|.++. .+. +....+++.|++|.|+.+|.++++.++..|+++|.+++.+++..+.
T Consensus        60 ~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~  137 (529)
T d1jdha_          60 MVSAIVRTMQNTNDVETARCTAGTLHNLS-HHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCc-hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh
Confidence            4788999997 567899999999999884 333 5578899999999999999999999999999999999999888888


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      .+.+.|+++.|+.+|++++++++..++++|++++..++..+..+...|+++.|+.++...+...++..+++++.+++...
T Consensus       138 ~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~  217 (529)
T d1jdha_         138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS  217 (529)
T ss_dssp             HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST
T ss_pred             HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc
Confidence            99999999999999999999999999999999998888888999999999999999987777889999999999999765


Q ss_pred             CCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHh
Q psy9169         234 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI  313 (440)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl  313 (440)
                       .........++++.|..++.+.+..+...+++++.+++......   ....|+++.|++++.+++..++..|+++|+|+
T Consensus       218 -~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l  293 (529)
T d1jdha_         218 -SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNL  293 (529)
T ss_dssp             -THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             -cccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhh
Confidence             33444556789999999999999999999999999998655432   22357899999999999999999999999999


Q ss_pred             hcCChHHHHHHHHcCCHHHHHHHhc--CCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHH
Q psy9169         314 ATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEAL  391 (440)
Q Consensus       314 ~~~~~~~~~~l~~~g~l~~L~~ll~--~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L  391 (440)
                      +.+++.....+.+.|+++.|+.++.  ++.+.++..|+++|.|++.+....          +.....+...|+++.+..+
T Consensus       294 ~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~----------~~~~~~i~~~~~l~~L~~l  363 (529)
T d1jdha_         294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------EMAQNAVRLHYGLPVVVKL  363 (529)
T ss_dssp             TTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------HHHHHHHHHTTCHHHHHHT
T ss_pred             ccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcc----------hhhhhhHHhcccchhHHHH
Confidence            9999999999999999999999885  455789999999999999765432          2446778889999999998


Q ss_pred             hcCCc-HHHHHHHHHHHHhhCCCCc
Q psy9169         392 QHHEN-ETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       392 ~~~~~-~~v~~~a~~il~~~~~~~~  415 (440)
                      +.+++ ..+...+..++..+...++
T Consensus       364 l~~~~~~~~~~~~~~~l~~l~~~~~  388 (529)
T d1jdha_         364 LHPPSHWPLIKATVGLIRNLALCPA  388 (529)
T ss_dssp             TSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             HhccchHHHHHHHHHHHhhcchhhh
Confidence            87664 5788888889988866543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-27  Score=235.85  Aligned_cols=322  Identities=19%  Similarity=0.210  Sum_probs=273.0

Q ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH-hCCHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcH
Q psy9169          73 KMTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIE-AGVVPICVELL-DDENPNTQFEATWALTNIASGTSE  150 (440)
Q Consensus        73 ~~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~-~g~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~  150 (440)
                      ...+|.|+++|+++|..++..|+..+.++...+  .....++. .|+++.|+.+| ...+++++..|+++|.+++. +++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~--~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~   92 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HRE   92 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cch
Confidence            356999999999999999999999999986432  33445554 57899999999 66789999999999999985 578


Q ss_pred             HHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhh
Q psy9169         151 QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC  230 (440)
Q Consensus       151 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~  230 (440)
                      .+..+++.|++|.|+.+|++++++++..|+++|+|++.+++..+..+...|+++.|+.++.+++ ..++..++++|.+++
T Consensus        93 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~  171 (529)
T d1jdha_          93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILA  171 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHh
Confidence            8889999999999999999999999999999999999988888899999999999999998776 899999999999999


Q ss_pred             hCCCCCCCHHHHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHH
Q psy9169         231 RNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT  309 (440)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~ll~~-~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~  309 (440)
                      .............++++.++.++.+ ++..++..+++++.+++.... ....+++.|+++.|+.++.+++..++..++++
T Consensus       172 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~-~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~  250 (529)
T d1jdha_         172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT  250 (529)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc-ccchhhhhhhhhhHHHHhcccchhhhhhhhhH
Confidence            7764444445567889999999965 557899999999999987544 45788999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHH
Q psy9169         310 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLE  389 (440)
Q Consensus       310 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~  389 (440)
                      +.+++......   ....|+++.|+.++.++++.++..|+++|+|++.++++.             +..+.+.|+++.+.
T Consensus       251 l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~i~~~~~i~~Li  314 (529)
T d1jdha_         251 LRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-------------KMMVCQVGGIEALV  314 (529)
T ss_dssp             HHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH-------------HHHHHHTTHHHHHH
T ss_pred             HHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHH-------------HHHHHHhhhHHHHH
Confidence            99997644321   223478999999999999999999999999999877654             56677888998888


Q ss_pred             HHh--cCCcHHHHHHHHHHHHhhCCCCc
Q psy9169         390 ALQ--HHENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       390 ~L~--~~~~~~v~~~a~~il~~~~~~~~  415 (440)
                      .++  .++++++...|..++..+....+
T Consensus       315 ~~l~~~~~~~~~~~~a~~aL~~l~~~~~  342 (529)
T d1jdha_         315 RTVLRAGDREDITEPAICALRHLTSRHQ  342 (529)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred             HHHHhhhcchhHHHHHHHHhhcccchhh
Confidence            755  46678999999999988876543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.9e-25  Score=211.94  Aligned_cols=325  Identities=16%  Similarity=0.186  Sum_probs=246.8

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..+|.|+++|+++++++|..|+++|.+++..++ .....+++.|++|.|+++|.++++++|..|+++|.+++.++++.+.
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            368999999999999999999999999964433 6689999999999999999999999999999999999999899999


Q ss_pred             HHHhcCCHHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhC---------------CCCcHH
Q psy9169         154 TVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---------------PNTPTT  217 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~---------------~~~~~~  217 (440)
                      .+.+.|+++.|+.++.+ .+++++..|+++|.+++.+.. .+......|+ +.++..+.               ...+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-LKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-THHHHHHHHH-HHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-hHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            99999999999999976 558999999999999998743 3344444333 33333221               223466


Q ss_pred             HHHHHHHHHHhhhhCCCCCCCHHH--------------------------------------------------------
Q psy9169         218 FLRNIVWAISNLCRNKNPAPDFEK--------------------------------------------------------  241 (440)
Q Consensus       218 ~~~~a~~~L~~l~~~~~~~~~~~~--------------------------------------------------------  241 (440)
                      ++..+++++.+++...........                                                        
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            777777777666543210000000                                                        


Q ss_pred             ------------------------------------------HhhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCChh-
Q psy9169         242 ------------------------------------------IKICLPLLNQLIH-TTDVETLSDICWALSYISDGHND-  277 (440)
Q Consensus       242 ------------------------------------------~~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~~-  277 (440)
                                                                ..++++.++.++. ..++.+...+++++..++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                                      0112333444443 34566777888888888865442 


Q ss_pred             ----hHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC------ChhHHHH
Q psy9169         278 ----KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS------RVNIVKE  347 (440)
Q Consensus       278 ----~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~------~~~i~~~  347 (440)
                          ....+.+.|+++.|+.+|.++++.++..++++++|++.... ....+. .++++.++.++...      ++.++..
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHH
Confidence                22445567999999999999999999999999999987544 444444 46889999988643      2468999


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHHHhhCCCCcc
Q psy9169         348 AAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH-ENETVYQKCYKIISMAFNDSAE  416 (440)
Q Consensus       348 a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~-~~~~v~~~a~~il~~~~~~~~~  416 (440)
                      |+++|.|++.++++.             +..+.+.||++.|..+..+ +++.+++.|..+|.++|.+.+-
T Consensus       397 a~~~L~~l~~~~~~~-------------~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         397 ACYTVRNLMASQPQL-------------AKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHHHHTTCTHH-------------HHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHHHHhcCCHHH-------------HHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            999999999877654             5667788999999998765 5789999999999999987654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.2e-21  Score=186.16  Aligned_cols=282  Identities=16%  Similarity=0.209  Sum_probs=215.6

Q ss_pred             CCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         117 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       117 g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      +.||.|+++|.+++|++|..|+++|+|+|.++++.+..+.+.|+||.|+++|++++++++..|+++|+||+.+++..+..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----------------cCCCHHH
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----------------HTTDVET  260 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----------------~~~d~~i  260 (440)
                      +.+.|+++.|+.++.+..+..++..++++|.+++.... . ........++.+...+                ...+..+
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-L-KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-T-HHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhh-h-HHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            99999999999999887778999999999999998752 2 2233334444444332                3457788


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhcc--------------------------------------------
Q psy9169         261 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD--------------------------------------------  296 (440)
Q Consensus       261 ~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~--------------------------------------------  296 (440)
                      +..+++++.+++..++.....+...|+++.++.++.                                            
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            899999998888765554444344455555544432                                            


Q ss_pred             -------------------------------------------------------CCChhHHHHHHHHHHHhhcCChH--
Q psy9169         297 -------------------------------------------------------SEETTILTAALRTVGNIATGNDH--  319 (440)
Q Consensus       297 -------------------------------------------------------~~~~~v~~~al~~L~nl~~~~~~--  319 (440)
                                                                             ..++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                                                   12233455666677777654432  


Q ss_pred             ---HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhc---
Q psy9169         320 ---QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQH---  393 (440)
Q Consensus       320 ---~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~---  393 (440)
                         ....+.+.|+++.|+.++.++++.++..++++|+|++.....              ...+.+ ++++.+..++.   
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~--------------~~~i~~-~~i~~li~~L~~~~  384 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--------------HRVMGN-QVFPEVTRLLTSHT  384 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--------------HHHHHH-HTHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhH--------------HHHHHH-hhHHHHHHHHhccc
Confidence               233455679999999999999999999999999999875432              233443 45666666553   


Q ss_pred             ---CCcHHHHHHHHHHHHhhCCCCc
Q psy9169         394 ---HENETVYQKCYKIISMAFNDSA  415 (440)
Q Consensus       394 ---~~~~~v~~~a~~il~~~~~~~~  415 (440)
                         ..++++...|..+|.++....+
T Consensus       385 ~~~~~~~~v~~~a~~~L~~l~~~~~  409 (457)
T d1xm9a1         385 GNTSNSEDILSSACYTVRNLMASQP  409 (457)
T ss_dssp             SCSTTHHHHHHHHHHHHHHHHTTCT
T ss_pred             cCcCCcHHHHHHHHHHHHHHhcCCH
Confidence               2356899999999988875443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-20  Score=170.33  Aligned_cols=199  Identities=16%  Similarity=0.190  Sum_probs=178.6

Q ss_pred             CCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHH
Q psy9169         128 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI  206 (440)
Q Consensus       128 ~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L  206 (440)
                      ..+.+.+..|+.+|.+++. +.+....+...|+++.++. ++.+++++++..|+++|++++.+++..+..+...|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            3456788999999999995 4777888999999999885 7788999999999999999999999999999999999999


Q ss_pred             HhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q psy9169         207 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG  286 (440)
Q Consensus       207 ~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g  286 (440)
                      +.++.+..+..++..++|+|++++++.++........++++.|+.++.+.+..++..++++|.+++..+++....+.+.|
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  186 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence            99998776689999999999999988755555556789999999999999999999999999999988888889999999


Q ss_pred             ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHc
Q psy9169         287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA  327 (440)
Q Consensus       287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~  327 (440)
                      +++.|+.+|.++++.++..|+++|++|+..++.....+...
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            99999999999999999999999999999888877766543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.1e-20  Score=166.54  Aligned_cols=233  Identities=10%  Similarity=0.090  Sum_probs=187.8

Q ss_pred             CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHH
Q psy9169         171 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN  250 (440)
Q Consensus       171 ~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~  250 (440)
                      .+.+.+..|+.+|.+++.+ ...+..+...|++++++..+.++.+.+++..++++|++++.+.+.........+++|.|+
T Consensus        29 ~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            3467889999999999966 556677888999999987555455599999999999999987633333445579999999


Q ss_pred             Hhhc-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCC
Q psy9169         251 QLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG  329 (440)
Q Consensus       251 ~ll~-~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~  329 (440)
                      .++. ..++.++..+++++++++.+.+.....+...|+++.|+.+|.+++..++..++++|++++.+++.....+.+.|+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            9996 567899999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHHHHH
Q psy9169         330 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCYKII  407 (440)
Q Consensus       330 l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~--~~~v~~~a~~il  407 (440)
                      ++.|+.++.++++.++..|+|+|.+|+.+++..+..+...+.  .+...      +..+..+....  ..+..+.+..++
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l--~~~~~------L~~~~~~~~~~~~~~e~~~~~~~ll  259 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEEL------LRHRCQLLQQHEEYQEELEFCEKLL  259 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGG--CHHHH------HHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhh--hHHHH------HHHHHHhccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988776555432100  01111      12222222222  356678888888


Q ss_pred             HhhCC
Q psy9169         408 SMAFN  412 (440)
Q Consensus       408 ~~~~~  412 (440)
                      +..|.
T Consensus       260 ~~~~~  264 (264)
T d1xqra1         260 QTCFS  264 (264)
T ss_dssp             HHHCC
T ss_pred             HHhcC
Confidence            88874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.8e-12  Score=129.62  Aligned_cols=304  Identities=12%  Similarity=0.076  Sum_probs=222.9

Q ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          75 TVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        75 ~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      .++.+...+.+.+++++..|+..+..++..-.........-..++|.+...+.+.++.++..++.++..++..   ....
T Consensus       282 l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~---~~~~  358 (588)
T d1b3ua_         282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI---LGKD  358 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH---HCHH
T ss_pred             hhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc---cchh
Confidence            4677778888888999999988888776543323334444467888899999889999999998888877632   1111


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN  234 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~  234 (440)
                      ......+|.+..++.+++++++..++.+++.+...-..  . -.....++.+..++.+.. ..++..++.++..++....
T Consensus       359 ~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~-~~~r~~~~~~l~~l~~~~~  434 (588)
T d1b3ua_         359 NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLG  434 (588)
T ss_dssp             HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHcC
Confidence            22235789999999999999999999888877632111  1 112345778888887665 7899999999998876431


Q ss_pred             CCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         235 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       235 ~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      ..   .....+.|.+..++.++...++..|+++++.++.....   ......+++.+..++.+++..+|..++.+++.+.
T Consensus       435 ~~---~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~---~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~  508 (588)
T d1b3ua_         435 VE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS  508 (588)
T ss_dssp             GG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             hH---hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            11   11245677888899999999999999999999853221   1123457899999999999999999999999887


Q ss_pred             cCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcC
Q psy9169         315 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHH  394 (440)
Q Consensus       315 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~  394 (440)
                      ...+.   ......++|.|..++.++.+.||..++++|..+...-...           .+...     ..+.++.|+..
T Consensus       509 ~~~~~---~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~-----------~~~~~-----i~~~l~~L~~D  569 (588)
T d1b3ua_         509 EVCGQ---DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------TLQSE-----VKPILEKLTQD  569 (588)
T ss_dssp             HHHHH---HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------HHHHH-----HHHHHHHHTTC
T ss_pred             HHcCh---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH-----------hHHHH-----HHHHHHHHcCC
Confidence            53221   1233458999999999999999999999999997543221           11111     24667788999


Q ss_pred             CcHHHHHHHHHHHHhh
Q psy9169         395 ENETVYQKCYKIISMA  410 (440)
Q Consensus       395 ~~~~v~~~a~~il~~~  410 (440)
                      ++.+|+..|.++++.+
T Consensus       570 ~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         570 QDVDVKYFAQEALTVL  585 (588)
T ss_dssp             SSHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999999876

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.1e-12  Score=126.25  Aligned_cols=318  Identities=14%  Similarity=0.120  Sum_probs=205.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy9169          77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI  156 (440)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~  156 (440)
                      +.+..+++++++.++..|+.++..++..-+    .......++|.+..++.+.++.+|..++.+|++++..   ......
T Consensus       206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~----~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~---~~~~~~  278 (588)
T d1b3ua_         206 PMFSNLASDEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA---VGPEIT  278 (588)
T ss_dssp             HHHHHHHTCSCHHHHTTHHHHHHHHHHHSC----HHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH---HCHHHH
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHH---hhhhhh
Confidence            334444445555555555555554433221    1112233566666666677777777777777777532   111233


Q ss_pred             hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCC
Q psy9169         157 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP  235 (440)
Q Consensus       157 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~  235 (440)
                      ...+++.+..++.+++.+++..++.+++.++.. ....+.......+++.+...+.+.. ..++..++.++..++..-. 
T Consensus       279 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~-~~vr~~~~~~l~~~~~~~~-  356 (588)
T d1b3ua_         279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-QHVKSALASVIMGLSPILG-  356 (588)
T ss_dssp             HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSC-HHHHHHHHTTGGGGHHHHC-
T ss_pred             hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCC-hHHHHHHHHHHhhhhhccc-
Confidence            346788889999998899999999999888743 2223333344567788888877665 7888888888887764321 


Q ss_pred             CCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         236 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       236 ~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                        .......++|.+..++.+++++++..++.++..+...-..  . -+...++|.+..++.+.++.++..++.+++.++.
T Consensus       357 --~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         357 --KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             --HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence              1234466889999999999999999998888777643221  1 1123457889999999999999999999998874


Q ss_pred             C--ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC-ChHH-HHHHh----hcCcch----------HHHH
Q psy9169         316 G--NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQ-IDHVI----QEGELN----------QMAL  377 (440)
Q Consensus       316 ~--~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~-~~~~-~~~~i----~~~~~~----------~~~~  377 (440)
                      .  .+.     ....+.+.+..++.++...+|..|+++|+.++.. .++. ...++    +.....          .+..
T Consensus       432 ~~~~~~-----~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~  506 (588)
T d1b3ua_         432 QLGVEF-----FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV  506 (588)
T ss_dssp             HHCGGG-----CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHH
T ss_pred             HcChHh-----HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            2  221     1123456778888888899999999999998753 2221 22222    211110          0011


Q ss_pred             HH-------HHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhCCC
Q psy9169         378 LV-------EESGGLEKLEALQHHENETVYQKCYKIISMAFND  413 (440)
Q Consensus       378 ~l-------~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~~~  413 (440)
                      ..       .....++.+..+..++.+.|+..|.+++..++..
T Consensus       507 l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            11       1123577788888999999999999998887653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.5e-10  Score=103.43  Aligned_cols=255  Identities=13%  Similarity=0.101  Sum_probs=188.6

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ...+.|+++|.++++.++..|+..|..+-   .         ..+++.|+.++.++++.++..|+++|+.+.........
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~---~---------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~   86 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRG---G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN   86 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC---C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhC---C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc
Confidence            45788999999999999999999998651   1         13589999999999999999999999998654222111


Q ss_pred             HHHhcCCHHH-HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhC
Q psy9169         154 TVINANAIPK-FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN  232 (440)
Q Consensus       154 ~i~~~g~i~~-L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  232 (440)
                            .++. +..++.++++.++..++.+|++++...+....     ..++.+...+.+.. ..++..+++++..+...
T Consensus        87 ------~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~-~~vr~~a~~~l~~~~~~  154 (276)
T d1oyza_          87 ------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKS-TNVRRATAFAISVINDK  154 (276)
T ss_dssp             ------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSC-HHHHHHHHHHHHTC---
T ss_pred             ------hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcc-hHHHHHHHHHHhhcchH
Confidence                  1223 34456778899999999999999865443322     24566666666655 78888888887765432


Q ss_pred             CCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHH
Q psy9169         233 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN  312 (440)
Q Consensus       233 ~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~n  312 (440)
                                 ..++.+..++...+..+...+..++..+.......         ++.++..+.+.+..++..+..+++.
T Consensus       155 -----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         155 -----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI---------RDCFVEMLQDKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH---------HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHhcccccchhhhhHHHHHHhhhcccccc---------chhhhhhhhhhhhhhhhhhccccch
Confidence                       35677888888999999999999888877665432         5567788888999999999999887


Q ss_pred             hhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHh
Q psy9169         313 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQ  392 (440)
Q Consensus       313 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~  392 (440)
                      +-  .         ..+++.|++.+.+  +.++..++++|+.+.  ++.                      .++.|..++
T Consensus       215 ~~--~---------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig--~~~----------------------~~~~L~~~l  257 (276)
T d1oyza_         215 RK--D---------KRVLSVLCDELKK--NTVYDDIIEAAGELG--DKT----------------------LLPVLDTML  257 (276)
T ss_dssp             TT--C---------GGGHHHHHHHHTS--SSCCHHHHHHHHHHC--CGG----------------------GHHHHHHHH
T ss_pred             hh--h---------hhhHHHHHHHhCC--hHHHHHHHHHHHHcC--CHH----------------------HHHHHHHHH
Confidence            63  2         2467888888864  468999999999984  332                      355566544


Q ss_pred             c-CCcHHHHHHHHHHHHh
Q psy9169         393 H-HENETVYQKCYKIISM  409 (440)
Q Consensus       393 ~-~~~~~v~~~a~~il~~  409 (440)
                      . .++.+|+..|.+.|.+
T Consensus       258 ~~~~d~~vr~~A~~~L~k  275 (276)
T d1oyza_         258 YKFDDNEIITSAIDKLKR  275 (276)
T ss_dssp             TTSSCCHHHHHHHHHHTC
T ss_pred             ccCCCHHHHHHHHHHHcc
Confidence            4 4578999999988764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.2e-10  Score=122.37  Aligned_cols=273  Identities=14%  Similarity=0.137  Sum_probs=194.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHH
Q psy9169          76 VPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV  155 (440)
Q Consensus        76 i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i  155 (440)
                      +..|++.+.+.|++.|+.|+..|.+.+.... ...+.-....+++.|+.+|.++++++|..|+.+|+.++..-++..  +
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~-~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--~   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--V   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--H
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcc-cccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--H
Confidence            6788999999999999999999998876443 112222233478999999999999999999999999987654422  1


Q ss_pred             HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc------hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhh
Q psy9169         156 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA------RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL  229 (440)
Q Consensus       156 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~------~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l  229 (440)
                        ..+++.|+..+.+++...+..+..+|..+...-+      .. .......+++.+...+....+..++..++.++..+
T Consensus        82 --~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          82 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL-AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCT-HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchh-HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence              2467888888888888888888877776652211      11 11222335666777777777788899999999988


Q ss_pred             hhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhc-cCCChhHHHHHHH
Q psy9169         230 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALR  308 (440)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL-~~~~~~v~~~al~  308 (440)
                      ....... -......+++.+...+.+.+..++..|+.+|+.++...+..    .-..+++.++..+ .+.+..++..++.
T Consensus       159 ~~~~g~~-l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         159 LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHTCSS-CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhhHh-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            7654222 12234568888889999999999999999999998655432    1123466677665 3455567777888


Q ss_pred             HHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCCh
Q psy9169         309 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS  360 (440)
Q Consensus       309 ~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~  360 (440)
                      +++.++...+......+ ..+++.+...+...++.++..++.++..++...+
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence            88888765443221111 3578999999999999999999999999886543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=2.1e-09  Score=95.69  Aligned_cols=200  Identities=14%  Similarity=0.105  Sum_probs=155.7

Q ss_pred             HhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q psy9169         115 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR  194 (440)
Q Consensus       115 ~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r  194 (440)
                      +....+.|+++|.+++|.+|..|+.+|+.+..           ..+++.|+.+++++++.++..|+++|+.+....... 
T Consensus        17 ~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~-   84 (276)
T d1oyza_          17 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-   84 (276)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred             ccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence            34567889999999999999999999998853           146899999999999999999999999987543221 


Q ss_pred             HHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q psy9169         195 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG  274 (440)
Q Consensus       195 ~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~  274 (440)
                      +.     .++.+...+.++.+..++..++.+|..++....     .....+++.+...+.+.++.++..++.+++.+.. 
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc-----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence            11     244555555555558999999999999987652     1234577888888899999999999888876542 


Q ss_pred             ChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHH
Q psy9169         275 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN  354 (440)
Q Consensus       275 ~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~n  354 (440)
                                ...++.+..++.+.+..++..+..+++.+......         ..+.+...+.+.+..++..+.+++..
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccch
Confidence                      34578888999999999999999999888766543         34557777888889999999999988


Q ss_pred             Hh
Q psy9169         355 IT  356 (440)
Q Consensus       355 l~  356 (440)
                      +.
T Consensus       215 ~~  216 (276)
T d1oyza_         215 RK  216 (276)
T ss_dssp             TT
T ss_pred             hh
Confidence            74

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.9e-09  Score=102.93  Aligned_cols=277  Identities=15%  Similarity=0.170  Sum_probs=178.5

Q ss_pred             CCHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc--CCChHHHHHHHHHHHHHhCCCc
Q psy9169          74 MTVPEMIEGMKS--SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        74 ~~i~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~--~~~~~i~~~a~~~L~nla~~~~  149 (440)
                      ..++.++..+.+  .+...+..++.++..+..... +....-.-..+++.++..+.  +.+..++..|+.++.++.....
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            457788888875  445666677777776654322 11111112235777888774  3567899999999999986544


Q ss_pred             HHHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         150 EQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       150 ~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      .... ........+.+..++.+++++++..++.+|..++...+..-...+.....+.+...+.+.. ..++..++..+..
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~  284 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFWSN  284 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS-HHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence            3222 2233346778888889999999999999999998544332111111222233334444444 7788888888877


Q ss_pred             hhhCC------------------CCCCC--HHHHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhHHH
Q psy9169         229 LCRNK------------------NPAPD--FEKIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKIQA  281 (440)
Q Consensus       229 l~~~~------------------~~~~~--~~~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~~~  281 (440)
                      ++...                  .....  ......+.|.+...+..       .+..++..+..++..++....+..- 
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-  363 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-  363 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhh-
Confidence            76321                  00001  11234556666665532       2335788888888888754332211 


Q ss_pred             HHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         282 VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       282 l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                         ..+++.+.+.+.++++.++..|+.+|+.++.+. +......+ ..+++.++..+.++++.+|..|+|+|+.++.
T Consensus       364 ---~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         364 ---PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             ---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             ---hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence               124677888889999999999999999998653 22222222 3578999999999999999999999999975

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-09  Score=112.93  Aligned_cols=282  Identities=12%  Similarity=0.123  Sum_probs=176.5

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHH
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM  153 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~  153 (440)
                      ..++.++..+.++++.++..|++++.++...-....... .-..+++.++..+.++++.++..|+++|.+++........
T Consensus       436 ~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~  514 (888)
T d1qbkb_         436 ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELV  514 (888)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSG
T ss_pred             hhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            346778888899999999999999988754221111122 2346788899888888999999999999999743111111


Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHhhhCCC-CcHHHHHHHHHHHHhhhh
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPN-TPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~r~~i~~~g~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~  231 (440)
                      ... ..+++.|+..+.......+..+..+++.++... +.....-.....++.+....... ++......+..+++.++.
T Consensus       515 p~~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~  593 (888)
T d1qbkb_         515 PYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT  593 (888)
T ss_dssp             GGH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHH
T ss_pred             hHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            111 245677888888877777767777777766211 11101111112345555544421 112234455666776665


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhh-----------------cCCCHHHHHHHHHHHHHhccCChhhHHHHH-hcCChHHHHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLI-----------------HTTDVETLSDICWALSYISDGHNDKIQAVV-DTGVVPRLVE  293 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll-----------------~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~-~~g~~~~Lv~  293 (440)
                      ..... -......+.+.+..++                 ...+......++.++..++.........++ ...+++.+..
T Consensus       594 ~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~  672 (888)
T d1qbkb_         594 ALQSG-FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ  672 (888)
T ss_dssp             HSTTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHH
T ss_pred             HhHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHH
Confidence            43221 1122222222222221                 123556777777777777754443334443 4567888999


Q ss_pred             hccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCC
Q psy9169         294 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN  359 (440)
Q Consensus       294 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~  359 (440)
                      .+.+.++.++..|+.++|.++..........++ .+++.+...+.++.+.++..|+|+++.|+...
T Consensus       673 ~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         673 CMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998765544433333 36777888888888899999999999998643

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=9.8e-08  Score=89.00  Aligned_cols=277  Identities=16%  Similarity=0.166  Sum_probs=184.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH--hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~--~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      +.+...+.+++.-....+...+..+++... .... ..+  ......+-.+....+...+.-++.+|..+... ++.|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~-~~~~-~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGL-HNVK-LVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTT-CCHH-HHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccc-cccc-hHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHH
Confidence            344555666777777777777777765443 2222 111  11223333333777888898899999988865 677776


Q ss_pred             HH--hcCCHHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhc--CChHHHHhhhCCC
Q psy9169         155 VI--NANAIPKFLQLLSS-----------------PHLNLAEQATWALGNIAGDGARARDLLLGL--GTMPQILALVQPN  213 (440)
Q Consensus       155 i~--~~g~i~~L~~lL~~-----------------~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~--g~i~~L~~ll~~~  213 (440)
                      +.  +...++.|+..|..                 ....++.+++.+++-++.+ +.....+...  +.++.|+++++..
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            64  33456666666632                 1257889999999999976 5555555554  4588999999877


Q ss_pred             CcHHHHHHHHHHHHhhhhCCCCCC-----CHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhcc-------------
Q psy9169         214 TPTTFLRNIVWAISNLCRNKNPAP-----DFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISD-------------  273 (440)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~-------------  273 (440)
                      ..+.+.|-++.++.|++.......     ......++++.+-.+...  .|+++..+.-..-..|-.             
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~  360 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA  360 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            779999999999999997642221     112234455554444332  577766554333222111             


Q ss_pred             --------CChhhH-HHHH----------hcCChHHHHHhcc----------CCChhHHHHHHHHHHHhhcCChHHHHHH
Q psy9169         274 --------GHNDKI-QAVV----------DTGVVPRLVELLD----------SEETTILTAALRTVGNIATGNDHQTDCV  324 (440)
Q Consensus       274 --------~~~~~~-~~l~----------~~g~~~~Lv~lL~----------~~~~~v~~~al~~L~nl~~~~~~~~~~l  324 (440)
                              -++... ..+-          +..++..|+++|.          +.++.+..-||.=||.++...|..+..+
T Consensus       361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il  440 (477)
T d1ho8a_         361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL  440 (477)
T ss_dssp             HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence                    111111 1111          1146888999995          2356788889999999999999999989


Q ss_pred             HHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         325 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       325 ~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      -+.|+=..++.+|.+++++|+.+|..|+.-+..
T Consensus       441 ~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         441 DKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999988764

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9.3e-09  Score=107.37  Aligned_cols=278  Identities=13%  Similarity=0.109  Sum_probs=166.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHH--hCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHHHH
Q psy9169          77 PEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMT  154 (440)
Q Consensus        77 ~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~--~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~~~  154 (440)
                      +.+.+.+.++++..+..|+.++..++.+..    +.+..  ..++|.|+..+.++++.+|..++|+|+.++.........
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~----~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGCM----QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTSH----HHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhHH----HHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            444456678899999999999987753221    11111  246788888889999999999999999987421111111


Q ss_pred             HHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCC
Q psy9169         155 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       155 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~  233 (440)
                      -.-..+++.++..+.++++.+++.|+++|.+++.... .....  -..+++.|+..+.... ......+..++..++..-
T Consensus       474 ~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~--~~~il~~l~~~l~~~~-~~~~~~~~~al~~l~~~~  550 (888)
T d1qbkb_         474 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDTLVFAFSKYQ-HKNLLILYDAIGTLADSV  550 (888)
T ss_dssp             HHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG--HHHHHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHhh
Confidence            1234688899999999999999999999999983211 11111  1234566777776655 455555566666655421


Q ss_pred             CC-CCCHHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCh----hhHHHHHhcCChHHHHH--------hc---
Q psy9169         234 NP-APDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHN----DKIQAVVDTGVVPRLVE--------LL---  295 (440)
Q Consensus       234 ~~-~~~~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~----~~~~~l~~~g~~~~Lv~--------lL---  295 (440)
                      .+ .........++|.+......  .+......++.+++.++....    .....+.+. ++..+..        ..   
T Consensus       551 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         551 GHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR-CVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             GGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHCTT
T ss_pred             hccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHhcccc
Confidence            11 11234455667777665542  222233344555555543221    111111110 1111111        11   


Q ss_pred             --cCCChhHHHHHHHHHHHhhcCChHHH-HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHH
Q psy9169         296 --DSEETTILTAALRTVGNIATGNDHQT-DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ  362 (440)
Q Consensus       296 --~~~~~~v~~~al~~L~nl~~~~~~~~-~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~  362 (440)
                        ...+..+...++.+++.++.+-.... ..+....+++.+...+.+.++.++..|..+++.++......
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~  699 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH  699 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHH
Confidence              12345677777888888775333333 33344568889999999999999999999999988654443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.6e-08  Score=94.78  Aligned_cols=236  Identities=15%  Similarity=0.141  Sum_probs=159.3

Q ss_pred             CHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          75 TVPEMIEGMKS--SNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        75 ~i~~lv~~L~s--~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .++.++..+.+  .+..++..|+.++..++.................+.+..++.+++++++..++.+|..++...+...
T Consensus       172 il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            35666777765  3578899999999887643221111122233456777777888999999999999999986655433


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--------------------HHHHhcCChHHHHhhhCC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--------------------DLLLGLGTMPQILALVQP  212 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--------------------~~i~~~g~i~~L~~ll~~  212 (440)
                      ...+.....+.+...+.+.+.+++..++.++..++.......                    ........++.+...+..
T Consensus       252 ~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  331 (458)
T d1ibrb_         252 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  331 (458)
T ss_dssp             TTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhc
Confidence            323333445556677778889999999999988863211000                    001111234444454432


Q ss_pred             ------CCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh-hhHHHHHhc
Q psy9169         213 ------NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDT  285 (440)
Q Consensus       213 ------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~-~~~~~l~~~  285 (440)
                            ..+..++..+..++..++.....  .  ....+++.+...+.++++.++..++.+|+.++.+.. ..... .-.
T Consensus       332 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~--~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~  406 (458)
T d1ibrb_         332 QDENDDDDDWNPCKAAGVCLMLLATCCED--D--IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVI  406 (458)
T ss_dssp             CCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T--HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTT
T ss_pred             chhhhccccccHHHHHHHHHHHHHHhccH--h--hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHH
Confidence                  12235778888888888876521  1  245678888899999999999999999999996542 22121 124


Q ss_pred             CChHHHHHhccCCChhHHHHHHHHHHHhhc
Q psy9169         286 GVVPRLVELLDSEETTILTAALRTVGNIAT  315 (440)
Q Consensus       286 g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~  315 (440)
                      .+++.++..+.++++.||..|+++||.++.
T Consensus       407 ~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         407 QAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999974

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=2.4e-06  Score=87.36  Aligned_cols=263  Identities=13%  Similarity=0.079  Sum_probs=167.7

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCcHHHHHH---
Q psy9169          81 EGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTV---  155 (440)
Q Consensus        81 ~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~~~~~~i---  155 (440)
                      ..+.|+|+.+|..|-..|..+...+.         .+.+..|...+  .+.++.+|..|+-.|.|............   
T Consensus        12 ~~~~s~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~   82 (861)
T d2bpta1          12 NSILSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ   82 (861)
T ss_dssp             HHHHCSSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence            44678999999999999987643221         14567788888  34456888899988988765432211100   


Q ss_pred             ---------HhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHH
Q psy9169         156 ---------INANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA  225 (440)
Q Consensus       156 ---------~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~  225 (440)
                               ....+-..++..+.++++.++..++.+++.++.. -+..+    -...++.|+..+.+.++..++..++.+
T Consensus        83 ~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~~~al~~  158 (861)
T d2bpta1          83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLA  158 (861)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred             hhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                     0112345677788888999999999999998742 11100    012567788888777767788889999


Q ss_pred             HHhhhhCCCCCCC--HHHHhhHHHHHHHhhcC--CCHHHHHHHHHHHHHhccCChhhH-HHHHhcCChHHHHHhccCCCh
Q psy9169         226 ISNLCRNKNPAPD--FEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKI-QAVVDTGVVPRLVELLDSEET  300 (440)
Q Consensus       226 L~~l~~~~~~~~~--~~~~~~~~~~L~~ll~~--~d~~i~~~a~~~L~~l~~~~~~~~-~~l~~~g~~~~Lv~lL~~~~~  300 (440)
                      |..++....+...  ......+++.+...+..  .+..++..++.++.++...-.... .......+++.+...+.++++
T Consensus       159 l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  238 (861)
T d2bpta1         159 LGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDI  238 (861)
T ss_dssp             HHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCH
Confidence            9999976533222  22234555666655543  457899999999998876543221 111223457778888899999


Q ss_pred             hHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         301 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       301 ~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      .++..++.++..++...+......+..-+...+.....+.++.++..++-.+..++
T Consensus       239 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~  294 (861)
T d2bpta1         239 EVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC  294 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            99999999999998654433222222222223334444556666666665555543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.6e-06  Score=80.66  Aligned_cols=321  Identities=12%  Similarity=0.061  Sum_probs=205.3

Q ss_pred             CCHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHHhC--CHHHHHHhccCCChHHHHHHHHHHHHHhCCC
Q psy9169          74 MTVPEMIEGMK-SSNPKMRMIATRSARKMLSKERHPP--IDELIEAG--VVPICVELLDDENPNTQFEATWALTNIASGT  148 (440)
Q Consensus        74 ~~i~~lv~~L~-s~~~~~~~~a~~~l~~lls~~~~~~--~~~ii~~g--~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~  148 (440)
                      ..+..++.+|. ...+++....+..+..++..++...  ...+.+..  .-+.+..++..++.-+...+..++..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            45778888887 4567777778888888887543111  11222212  2345555666666777778888888887654


Q ss_pred             cHHHHHHH-hcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHhhhCC-------------
Q psy9169         149 SEQTMTVI-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQP-------------  212 (440)
Q Consensus       149 ~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~--~~g~i~~L~~ll~~-------------  212 (440)
                      .......- .......+-.+....+......++.++..+... +.+|..+.  ....+++|+++|..             
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            33222111 112334444454667788888899999988877 67777764  33456666666642             


Q ss_pred             ---CCcHHHHHHHHHHHHhhhhCCCCCCCHHHH--hhHHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCh-----hhHHH
Q psy9169         213 ---NTPTTFLRNIVWAISNLCRNKNPAPDFEKI--KICLPLLNQLIH-TTDVETLSDICWALSYISDGHN-----DKIQA  281 (440)
Q Consensus       213 ---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~~~L~~ll~-~~d~~i~~~a~~~L~~l~~~~~-----~~~~~  281 (440)
                         .....++-.++.|++-|+.... .......  .+.++.++.++. +..+.+..-++.++.|++....     .....
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~  311 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQL  311 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence               1234678888888888886531 1111111  245778888885 4678899999999999986533     22345


Q ss_pred             HHhcCChHHHHHhccC---CChhHHHHHHHHHHHhhc----------------------CChHHH-HHHHH---------
Q psy9169         282 VVDTGVVPRLVELLDS---EETTILTAALRTVGNIAT----------------------GNDHQT-DCVIQ---------  326 (440)
Q Consensus       282 l~~~g~~~~Lv~lL~~---~~~~v~~~al~~L~nl~~----------------------~~~~~~-~~l~~---------  326 (440)
                      ++..++++. +..|..   .++++. ..+..|..+..                      -+|.++ +.+..         
T Consensus       312 ~v~~~~l~~-l~~L~~r~~~Dedl~-edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~  389 (477)
T d1ho8a_         312 LLLGNALPT-VQSLSERKYSDEELR-QDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  389 (477)
T ss_dssp             HHHHCHHHH-HHHHHSSCCSSHHHH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHcchhHH-HHHHhcCCCCCHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhccc
Confidence            566666655 455533   244433 23333332211                      122222 22322         


Q ss_pred             -cCCHHHHHHHhc----------CCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCC
Q psy9169         327 -AGGLQKMKKLLS----------SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHE  395 (440)
Q Consensus       327 -~g~l~~L~~ll~----------~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~  395 (440)
                       ..++..|+.+|.          +.++.+..-||.=|+.++..-|.-             +..+++.|+-+.+..|+.|+
T Consensus       390 ~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g-------------r~il~~lg~K~~vM~Lm~h~  456 (477)
T d1ho8a_         390 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-------------IDVLDKTGGKADIMELLNHS  456 (477)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHHSHHHHHHHHTSCS
T ss_pred             chHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch-------------hHHHHHcCcHHHHHHHhcCC
Confidence             236888999986          235678888999999999866543             67788999999999999999


Q ss_pred             cHHHHHHHHHHHHhhC
Q psy9169         396 NETVYQKCYKIISMAF  411 (440)
Q Consensus       396 ~~~v~~~a~~il~~~~  411 (440)
                      |++|+..|..++.+++
T Consensus       457 d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         457 DSRVKYEALKATQAII  472 (477)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999998875

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.7e-06  Score=88.86  Aligned_cols=276  Identities=16%  Similarity=0.208  Sum_probs=176.5

Q ss_pred             CCHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHH--HhCCHHHHHHhcc--CCChHHHHHHHHHHHHHhCC
Q psy9169          74 MTVPEMIEGMKSSN--PKMRMIATRSARKMLSKERHPPIDELI--EAGVVPICVELLD--DENPNTQFEATWALTNIASG  147 (440)
Q Consensus        74 ~~i~~lv~~L~s~~--~~~~~~a~~~l~~lls~~~~~~~~~ii--~~g~i~~Lv~lL~--~~~~~i~~~a~~~L~nla~~  147 (440)
                      .-++.+++.+.+++  ...+..++.++..++..-. +  ..+.  -..+++.++..+.  +.+..++..++.++.++...
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~-~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~  204 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-P--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-H--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCC-H--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHH
Confidence            35788888887654  5677778888887754222 1  1111  1346788888883  34568999999999888754


Q ss_pred             CcHHHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHH
Q psy9169         148 TSEQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI  226 (440)
Q Consensus       148 ~~~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L  226 (440)
                      ...... .....-+++.+...+.+++++++..++.+|..++...+..-...+...+.+.+...+.+.. ..+...++..+
T Consensus       205 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~  283 (876)
T d1qgra_         205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFW  283 (876)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHH
Confidence            332211 1122235677888888999999999999999998654443333333344455555555554 66666666666


Q ss_pred             HhhhhCC---------------CC---CCCH--HHHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhH
Q psy9169         227 SNLCRNK---------------NP---APDF--EKIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKI  279 (440)
Q Consensus       227 ~~l~~~~---------------~~---~~~~--~~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~  279 (440)
                      ..++...               .+   ....  .....++|.+...+..       ++..++..+..++..++.......
T Consensus       284 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~  363 (876)
T d1qgra_         284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh
Confidence            5555310               00   0111  1224455666655532       223477777778777774433221


Q ss_pred             HHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChH-HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         280 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       280 ~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      -.    .+++.+...+.+++...+..++.+++.++.+... .....+ ..+++.+...+.++++.++..|+|+++.++..
T Consensus       364 ~~----~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         364 VP----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             HH----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hh----hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence            11    2356666777888889999999999999876543 333222 35788999999999999999999999999864

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.3e-07  Score=101.50  Aligned_cols=287  Identities=11%  Similarity=0.131  Sum_probs=179.6

Q ss_pred             CHHHHHHhc-cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         118 VVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       118 ~i~~Lv~lL-~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      +++.+...+ ...++.++..++.+|..+....+...... ...+++.|+..+.+++..+|..|+.+|+.++...+..   
T Consensus       131 l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---  206 (1207)
T d1u6gc_         131 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---  206 (1207)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---
Confidence            455555555 56778899999999998864322111000 1235778888889999999999999999998654321   


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCCh
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN  276 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~  276 (440)
                       .-...++.++..+..+.+...++.++.++..+++.. +..-......++|.+...+..++++++..++.++..++...+
T Consensus       207 -~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         207 -VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA-GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS-SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc-chhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence             112456777776665544566777888888888764 221112246789999999999999999999999888875443


Q ss_pred             hhHHHHHhcCChHHHHHh-------------------------------------ccCCChhHHHHHHHHHHHhhcCChH
Q psy9169         277 DKIQAVVDTGVVPRLVEL-------------------------------------LDSEETTILTAALRTVGNIATGNDH  319 (440)
Q Consensus       277 ~~~~~l~~~g~~~~Lv~l-------------------------------------L~~~~~~v~~~al~~L~nl~~~~~~  319 (440)
                      ....... ..+++.+...                                     ..+.+..++..|+.+|+.++...++
T Consensus       285 ~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~  363 (1207)
T d1u6gc_         285 KEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE  363 (1207)
T ss_dssp             CCCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT
T ss_pred             hhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHH
Confidence            2211111 0111111111                                     1223457899999999999887766


Q ss_pred             HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhh---cCcchHHHHHHHH--cCcHHHHHHHhcC
Q psy9169         320 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ---EGELNQMALLVEE--SGGLEKLEALQHH  394 (440)
Q Consensus       320 ~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~---~~~~~~~~~~l~~--~g~l~~l~~L~~~  394 (440)
                      ....... .+++.|+..+.+.++.++..+..++..+.............   ..........+.+  -..++.+.....+
T Consensus       364 ~l~~~~~-~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~  442 (1207)
T d1u6gc_         364 MLPEFYK-TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE  442 (1207)
T ss_dssp             THHHHHT-TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC
T ss_pred             HHHHHHH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcC
Confidence            5554443 58899999998888999999999988876421111000000   0000001111111  1235666777788


Q ss_pred             CcHHHHHHHHHHHHhhCC
Q psy9169         395 ENETVYQKCYKIISMAFN  412 (440)
Q Consensus       395 ~~~~v~~~a~~il~~~~~  412 (440)
                      .+..++..+..++..+..
T Consensus       443 ~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         443 KSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             SCHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHH
Confidence            888998888888777643

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.55  E-value=8.6e-09  Score=78.43  Aligned_cols=110  Identities=20%  Similarity=0.200  Sum_probs=88.1

Q ss_pred             cCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcCCHHHH
Q psy9169         254 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM  333 (440)
Q Consensus       254 ~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g~l~~L  333 (440)
                      .++|+.++..|+++|+.+.            ...++.|+..|.++++.++..|+++|+++..  +         +.++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~L   58 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPL   58 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHHH
Confidence            4566677777777776543            1347889999999999999999999998642  1         356889


Q ss_pred             HHHhcCCChhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy9169         334 KKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA  410 (440)
Q Consensus       334 ~~ll~~~~~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~  410 (440)
                      ..++.++++.+|..|+++|+.+.  ++.                      .++.|..++.++++.|+..|...|++|
T Consensus        59 ~~~l~d~~~~VR~~a~~aL~~i~--~~~----------------------~~~~L~~ll~d~~~~vr~~A~~aL~th  111 (111)
T d1te4a_          59 IKLLEDDSGFVRSGAARSLEQIG--GER----------------------VRAAMEKLAETGTGFARKVAVNYLETH  111 (111)
T ss_dssp             HHHHHHCCTHHHHHHHHHHHHHC--SHH----------------------HHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HhhhccchhHHHHHHHHHHHHhC--ccc----------------------hHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence            99999999999999999999983  322                      356678889999999999999999875

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.9e-06  Score=87.13  Aligned_cols=277  Identities=16%  Similarity=0.137  Sum_probs=178.7

Q ss_pred             CHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccCCChHHHHHHHHHHHHHhCCCcHHH
Q psy9169          75 TVPEMIEGMKSS--NPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT  152 (440)
Q Consensus        75 ~i~~lv~~L~s~--~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~~~~~i~~~a~~~L~nla~~~~~~~  152 (440)
                      .++.++..+.+.  +..++..|+.++...+..............-+++.+...+.+++++++..++.+|..++...++..
T Consensus       173 il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            355666666643  467888888888877643321101111222356667777788999999999999999987666655


Q ss_pred             HHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--------------------HHHHhcCChHHHHhhhCC
Q psy9169         153 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--------------------DLLLGLGTMPQILALVQP  212 (440)
Q Consensus       153 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r--------------------~~i~~~g~i~~L~~ll~~  212 (440)
                      ...+...+.+.+...+.+.+.+++..++..+..++.......                    .......+++.+...+..
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  332 (876)
T d1qgra_         253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence            555555667777888888888999888888887763211110                    001111233444444432


Q ss_pred             C------CcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q psy9169         213 N------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG  286 (440)
Q Consensus       213 ~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g  286 (440)
                      .      +...+...+..++..++.....    .....+++.+...+.+.+...+..++.+++.++.+.......-.-..
T Consensus       333 ~~~~~~~~~~~~~~~a~~~l~~l~~~~~~----~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~  408 (876)
T d1qgra_         333 QDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ  408 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHH
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhhh----hhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            1      1234666777777777654311    12345667777888889999999999999999876543222222245


Q ss_pred             ChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHH--HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         287 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQT--DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       287 ~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~--~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                      +++.++..+.++++.++..|+++++.++...+...  ...+ ..+++.+...+. .++.++..++|++.+++.
T Consensus       409 ~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLS-AEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHh-hhHHHHHHHHhc-CCHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999986432211  0000 123455555554 367899999999999874

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=9.1e-06  Score=82.96  Aligned_cols=276  Identities=12%  Similarity=0.124  Sum_probs=170.7

Q ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHH--hCCHHHHHHhc--cCCChHHHHHHHHHHHHHhCCCc
Q psy9169          75 TVPEMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIE--AGVVPICVELL--DDENPNTQFEATWALTNIASGTS  149 (440)
Q Consensus        75 ~i~~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~--~g~i~~Lv~lL--~~~~~~i~~~a~~~L~nla~~~~  149 (440)
                      -++.|++.+.+++ ...+..|+.++..++...... ...+..  ..+++.++..+  ...+..++..++.++.++.....
T Consensus       135 li~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~-~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~  213 (861)
T d2bpta1         135 LMKIMVDNTGAEQPENVKRASLLALGYMCESADPQ-SQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK  213 (861)
T ss_dssp             HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTT-SSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHh
Confidence            3566777777654 556777788887775332211 111111  12344445544  45567899999999999876543


Q ss_pred             HHHH-HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         150 EQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       150 ~~~~-~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      .... .......++.+...+.+++++++..++.++..++...+..-...+. ..+..+......+.++.++..++..+..
T Consensus       214 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~v~~~~~~~l~~  292 (861)
T d2bpta1         214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWST  292 (861)
T ss_dssp             HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            3221 1222346778889999999999999999999998543322121111 1233443333344447788777777666


Q ss_pred             hhhCC--------------CCCCC--HHHHhhHHHHHHHhhcC-------CCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q psy9169         229 LCRNK--------------NPAPD--FEKIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKIQAVVDT  285 (440)
Q Consensus       229 l~~~~--------------~~~~~--~~~~~~~~~~L~~ll~~-------~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~  285 (440)
                      ++...              .....  ......++|.+...+..       .+......+..++..++...++..-..   
T Consensus       293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---  369 (861)
T d2bpta1         293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP---  369 (861)
T ss_dssp             HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH---
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh---
Confidence            55321              01111  12234566777766643       233567777777777765433322111   


Q ss_pred             CChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHH-HHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhc
Q psy9169         286 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT-DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA  357 (440)
Q Consensus       286 g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~-~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~  357 (440)
                       +.+.+...+.+.+...+..|+.+++.++.+..... ...+ ..+++.+...+.++++.++..++|+++.++.
T Consensus       370 -~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         370 -VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             -HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             -hcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence             24455566678888999999999999987654432 2233 3478899999999999999999999999874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.39  E-value=2.3e-08  Score=75.93  Aligned_cols=109  Identities=16%  Similarity=0.235  Sum_probs=89.7

Q ss_pred             ccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q psy9169         126 LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ  205 (440)
Q Consensus       126 L~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~  205 (440)
                      |.++++.+|..|+++|+.+..            ..++.|+..|.++++.++..|+++|+++...           +.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHHH
Confidence            456788889989998887532            4678899999999999999999999987532           24788


Q ss_pred             HHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy9169         206 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS  269 (440)
Q Consensus       206 L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~  269 (440)
                      |..++.+.+ ..++..++++|..+..           ...++.|..++.++++.++..|+.+|.
T Consensus        58 L~~~l~d~~-~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCC-THHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccch-hHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999998666 8999999999998742           357888999999999999999988763

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.0011  Score=57.62  Aligned_cols=201  Identities=14%  Similarity=0.127  Sum_probs=142.9

Q ss_pred             HHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH----HHHHhc-CChHHHHhhhCCCCcHHHHHHHHHHHHh
Q psy9169         154 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR----DLLLGL-GTMPQILALVQPNTPTTFLRNIVWAISN  228 (440)
Q Consensus       154 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r----~~i~~~-g~i~~L~~ll~~~~~~~~~~~a~~~L~~  228 (440)
                      .+...+.+..|+..|..-+-+.+..+..+++++.......|    +.+... .++..|+....   ++++--.+...|..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHHH
Confidence            44556889999999998888899999999999985543332    444432 23333433333   34455555555555


Q ss_pred             hhhCCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhc---CChHHHHHhccCCChhHHHH
Q psy9169         229 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT---GVVPRLVELLDSEETTILTA  305 (440)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~---g~~~~Lv~lL~~~~~~v~~~  305 (440)
                      ..+.. .-.......+.+-.+.+.+..++-++..+|..++..+..........++..   ..+..+..+|.+++.-++..
T Consensus       141 cik~e-~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         141 CIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHhhH-HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            55553 222333445556667778888999999999999998887666555555554   35677788999999999999


Q ss_pred             HHHHHHHhhcCChH---HHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHHHHHhcC
Q psy9169         306 ALRTVGNIATGNDH---QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG  358 (440)
Q Consensus       306 al~~L~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L~nl~~~  358 (440)
                      ++..||.+......   .+..+-+..-+..++.+|++....++-+|..+.--.++.
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN  275 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  275 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence            99999999864432   223333445689999999999999999999999888875

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.026  Score=48.77  Aligned_cols=202  Identities=11%  Similarity=0.088  Sum_probs=136.9

Q ss_pred             HHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCCCH--HHH---hhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q psy9169         196 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF--EKI---KICLPLLNQLIHTTDVETLSDICWALSY  270 (440)
Q Consensus       196 ~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~---~~~~~~L~~ll~~~d~~i~~~a~~~L~~  270 (440)
                      .+...+.+..|+..|..-+ -+.++.++.+++++.+........  ...   .+++..|+....  ++++...+-..|..
T Consensus        64 e~~~~d~l~~Li~~L~~L~-fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCC-CchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHH
Confidence            3445567777887776655 788999999999999876332222  111   234444444433  44455555555555


Q ss_pred             hccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCChHHHHHHHHcC---CHHHHHHHhcCCChhHHHH
Q psy9169         271 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GLQKMKKLLSSSRVNIVKE  347 (440)
Q Consensus       271 l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~l~~~g---~l~~L~~ll~~~~~~i~~~  347 (440)
                      +... +.....++....+..+.+++..++-++...|..++..+.+.++.....++..+   ++..+..+|.++++-+|+.
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRq  219 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  219 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHH
Confidence            5544 44557778888899999999999999999999999999998877666666655   5677788999999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhC
Q psy9169         348 AAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF  411 (440)
Q Consensus       348 a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~a~~il~~~~  411 (440)
                      +...|+.+.......          ..+...+.+..-+..+..|+.++...|+--|..+..-|-
T Consensus       220 SlKLLgelLldr~N~----------~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFV  273 (330)
T d1upka_         220 SLKLLGELLLDRHNF----------TIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV  273 (330)
T ss_dssp             HHHHHHHHHHSGGGH----------HHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHH----------HHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhh
Confidence            999999998643221          111223333333455556666666666666665555443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.69  E-value=0.14  Score=45.30  Aligned_cols=167  Identities=14%  Similarity=0.089  Sum_probs=100.5

Q ss_pred             CHHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC---CcHHHHHHHHHHHHhhhh---
Q psy9169         160 AIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCR---  231 (440)
Q Consensus       160 ~i~~L~~lL~~~~--~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~---~~~~~~~~a~~~L~~l~~---  231 (440)
                      ++..+.+++.+..  ..-....++.+.....  |..       ..+..+..++...   .++.+...+..+++++..   
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt~-------~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--ATR-------ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CCH-------HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CCH-------HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4556667776554  3333344445544332  221       1245555666532   235666666666665553   


Q ss_pred             -CCCCCCCHHHHhhHHHHHHHhhcCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccC-------CChhHH
Q psy9169         232 -NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-------EETTIL  303 (440)
Q Consensus       232 -~~~~~~~~~~~~~~~~~L~~ll~~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~-------~~~~v~  303 (440)
                       .. +.........+...+.+.....+.+-+.-++.+|+|+..  +         +.++.|..++..       .+..++
T Consensus       160 ~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR  227 (336)
T d1lsha1         160 ANT-VSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQ  227 (336)
T ss_dssp             TTC-SSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHH
T ss_pred             cCC-CCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHH
Confidence             33 222222234445555556667788888888999999863  2         236777777743       245799


Q ss_pred             HHHHHHHHHhhcCChHHHHHHHHcCCHHHHHHHhcCC--ChhHHHHHHHHHHHH
Q psy9169         304 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNI  355 (440)
Q Consensus       304 ~~al~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~--~~~i~~~a~~~L~nl  355 (440)
                      ..|++++.+++...+...+        +.+..++.+.  ++++|..|+.+|...
T Consensus       228 ~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRiaA~~~lm~t  273 (336)
T d1lsha1         228 AEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIRSCIVFFES  273 (336)
T ss_dssp             HHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            9999999999887765433        4455665544  568888888888663

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.05  E-value=0.0051  Score=51.77  Aligned_cols=41  Identities=12%  Similarity=0.100  Sum_probs=28.1

Q ss_pred             hccCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHH
Q psy9169         125 LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWAL  183 (440)
Q Consensus       125 lL~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L  183 (440)
                      +|.+++.+++..|+.                  .-.+..|..+++++++.|+..++..|
T Consensus        50 ~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          50 YLADPFWERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             GTTCSSHHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             HhcCCcHHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHc
Confidence            456777778765543                  12356677888888888888887654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.30  E-value=0.4  Score=42.14  Aligned_cols=203  Identities=13%  Similarity=0.142  Sum_probs=123.0

Q ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhccC----CChHHHHHHHHHHHHHhCC--
Q psy9169          74 MTVPEMIEGMKSSNPKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD----ENPNTQFEATWALTNIASG--  147 (440)
Q Consensus        74 ~~i~~lv~~L~s~~~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~~----~~~~i~~~a~~~L~nla~~--  147 (440)
                      ..+..+.+.+.++..... .|...+..+..... |+.+      .+..+.+++.+    .++.++..+..+++++...  
T Consensus        88 ~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~-Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          88 EALLFLKRTLASEQLTSA-EATQIVASTLSNQQ-ATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCC-CCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCC-CCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            346667777776654333 33344444433322 4333      34555666643    5678888888888877631  


Q ss_pred             --CcHHHHHHHhcCCHHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCC------Cc
Q psy9169         148 --TSEQTMTVINANAIPKFLQLL----SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN------TP  215 (440)
Q Consensus       148 --~~~~~~~i~~~g~i~~L~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~------~~  215 (440)
                        ++.+     ....++.+...+    ...+.+-+..++.+|||+..  +         +.++.|..++...      .+
T Consensus       160 ~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~  223 (336)
T d1lsha1         160 ANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYS  223 (336)
T ss_dssp             TTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSC
T ss_pred             cCCCCC-----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhccccccccccc
Confidence              1111     122344444444    45666666778999999853  2         3477788877532      24


Q ss_pred             HHHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH
Q psy9169         216 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH--TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE  293 (440)
Q Consensus       216 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~--~~d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~  293 (440)
                      ..++..|+|+|.++.... +       ..+.+.+..++.  ..+.+++..|+.+|...  .++.        ..+..+..
T Consensus       224 ~~vR~aAi~Alr~~~~~~-p-------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~~--------~~l~~i~~  285 (336)
T d1lsha1         224 TRVQAEAIMALRNIAKRD-P-------RKVQEIVLPIFLNVAIKSELRIRSCIVFFES--KPSV--------ALVSMVAV  285 (336)
T ss_dssp             HHHHHHHHHTTTTGGGTC-H-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT--CCCH--------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcC-c-------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhc--CCCH--------HHHHHHHH
Confidence            679999999999987654 1       223444555543  46789999998887553  2221        12566666


Q ss_pred             hcc-CCChhHHHHHHHHHHHhhcCCh
Q psy9169         294 LLD-SEETTILTAALRTVGNIATGND  318 (440)
Q Consensus       294 lL~-~~~~~v~~~al~~L~nl~~~~~  318 (440)
                      .+. .++..|.......|.+++....
T Consensus       286 ~l~~E~~~QV~sfv~S~l~~la~s~~  311 (336)
T d1lsha1         286 RLRREPNLQVASFVYSQMRSLSRSSN  311 (336)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHhCCC
Confidence            664 4567888888888888887543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.27  E-value=0.016  Score=48.57  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=20.7

Q ss_pred             hCCHHHHHHhccCCChHHHHHHHHHH
Q psy9169         116 AGVVPICVELLDDENPNTQFEATWAL  141 (440)
Q Consensus       116 ~g~i~~Lv~lL~~~~~~i~~~a~~~L  141 (440)
                      .-.+..|..+++++++.|+..++..|
T Consensus        65 ~a~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          65 YSPVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             TSCGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHc
Confidence            34566788888999999999998654

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.89  E-value=1.1  Score=39.24  Aligned_cols=139  Identities=14%  Similarity=0.117  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhhcCC--hHHHHHHH---------
Q psy9169         257 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN--DHQTDCVI---------  325 (440)
Q Consensus       257 d~~i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~~~~--~~~~~~l~---------  325 (440)
                      +......++.||..+..........+-..+++..++..|.++.+.++..|+..|+.+|.-.  +.....++         
T Consensus        69 d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~  148 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM  148 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            3567888999999999877766566666789999999999999999999999999998532  12222222         


Q ss_pred             -HcCCHHHHHHHhcCCC-hhHHHHHHHHHHHHhcCChHHHHHHhhcCcchHHHHHHHHcCcHHHHHHHhcCCcHHHHHH
Q psy9169         326 -QAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGELNQMALLVEESGGLEKLEALQHHENETVYQK  402 (440)
Q Consensus       326 -~~g~l~~L~~ll~~~~-~~i~~~a~~~L~nl~~~~~~~~~~~i~~~~~~~~~~~l~~~g~l~~l~~L~~~~~~~v~~~  402 (440)
                       +.+-+..+++.+.++. .+.+..+...+..++.+.++.-.++       .++..+..+|..+.|..+....++++..+
T Consensus       149 ~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~-------~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         149 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV-------HIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             HTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH-------HHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             cCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHH-------HHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence             3356777777777654 3454444444444555544322222       34677888888888888888777765443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.42  Score=48.12  Aligned_cols=183  Identities=6%  Similarity=0.067  Sum_probs=100.0

Q ss_pred             cCCChHHHHHHHHHHHHHhCCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--------HHHHH
Q psy9169         127 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA--------RDLLL  198 (440)
Q Consensus       127 ~~~~~~i~~~a~~~L~nla~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--------r~~i~  198 (440)
                      ....+.++..++|+++..+.....  ...  ..+++.++.+|.+++..++..|++++..++......        .+.+.
T Consensus       468 ~~~~~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~  543 (959)
T d1wa5c_         468 NIPHIILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS  543 (959)
T ss_dssp             SCSCHHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT
T ss_pred             CCchHHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHH
Confidence            344577999999999998865332  112  357899999999999999999999999998532110        00000


Q ss_pred             --hcCChHHHHhhhCCCCc-H---HHHHHHHHHHHhhhhCCCCCCCHHHHhhHHHHHHHhh----cC-CCHHHHHHHHHH
Q psy9169         199 --GLGTMPQILALVQPNTP-T---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----HT-TDVETLSDICWA  267 (440)
Q Consensus       199 --~~g~i~~L~~ll~~~~~-~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll----~~-~d~~i~~~a~~~  267 (440)
                        -...+..|+..+..... .   .....++.++..+........ ......+++.+...+    .+ .++.....+..+
T Consensus       544 p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~  622 (959)
T d1wa5c_         544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-QPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFES  622 (959)
T ss_dssp             TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-GGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence              01123334444432221 1   111235555555443221111 112233444444333    22 356677777778


Q ss_pred             HHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHHHHhh
Q psy9169         268 LSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA  314 (440)
Q Consensus       268 L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L~nl~  314 (440)
                      ++.+..........-+...++|.+...+..........++..++.+.
T Consensus       623 l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~  669 (959)
T d1wa5c_         623 IGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (959)
T ss_dssp             HHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            87776433211122233455777777776665555666666555544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.83  E-value=1.2  Score=39.13  Aligned_cols=155  Identities=12%  Similarity=0.083  Sum_probs=103.6

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHHhCCHHHHHHhcc----C-------CChHHHHHHHHHHHHHh
Q psy9169          78 EMIEGMKSSN-PKMRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD----D-------ENPNTQFEATWALTNIA  145 (440)
Q Consensus        78 ~lv~~L~s~~-~~~~~~a~~~l~~lls~~~~~~~~~ii~~g~i~~Lv~lL~----~-------~~~~i~~~a~~~L~nla  145 (440)
                      ..|..|++.- .+.....+..|+--+...+...++.+ ..+++..|+.+|.    .       .++..+.+++.||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            4555665433 34444555565544544442335666 4556777777761    1       12468899999999998


Q ss_pred             CCCcHHHHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--chhHHHH----------HhcCChHHHHhhhCCC
Q psy9169         146 SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG--ARARDLL----------LGLGTMPQILALVQPN  213 (440)
Q Consensus       146 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~--~~~r~~i----------~~~g~i~~L~~ll~~~  213 (440)
                      .........+-..+++..++..|.+++..++..|+..|..+|...  +.....+          -+.+-+.+++..+...
T Consensus        85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence            765445556667789999999999999999999999999998432  2222222          2345678888888877


Q ss_pred             CcHHHHHHHHHHHHhhhhCC
Q psy9169         214 TPTTFLRNIVWAISNLCRNK  233 (440)
Q Consensus       214 ~~~~~~~~a~~~L~~l~~~~  233 (440)
                      .+.+....++..+-.+..+.
T Consensus       165 ~~~ey~~a~m~lIN~li~~~  184 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPA  184 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHHHcCc
Confidence            76777777777777777664

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=1.8  Score=43.25  Aligned_cols=218  Identities=12%  Similarity=0.115  Sum_probs=114.3

Q ss_pred             CCChHHHHHHHHHHHHHhCCCcHHHHHHH----hcCCH----HHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHH
Q psy9169         128 DENPNTQFEATWALTNIASGTSEQTMTVI----NANAI----PKFLQLL---SSPHLNLAEQATWALGNIAGDGARARDL  196 (440)
Q Consensus       128 ~~~~~i~~~a~~~L~nla~~~~~~~~~i~----~~g~i----~~L~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~r~~  196 (440)
                      +.+...+..++.+++.++...........    .....    +.+...+   ..+...++..++|+++..+.....  ..
T Consensus       416 ~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~--~~  493 (959)
T d1wa5c_         416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--AQ  493 (959)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--HH
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccH--HH
Confidence            45667778888888887643211000000    00112    2222233   334578999999999999865332  11


Q ss_pred             HHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhhCCCCCC------CH----HHHhhHHHHHHHhhcCCCH--H---HH
Q psy9169         197 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP------DF----EKIKICLPLLNQLIHTTDV--E---TL  261 (440)
Q Consensus       197 i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~------~~----~~~~~~~~~L~~ll~~~d~--~---i~  261 (440)
                      .  ..+++.++..|.+.+ ..++..|++++..++.......      ..    .....++..+...+.....  .   ..
T Consensus       494 ~--~~~~~~l~~~L~~~~-~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~  570 (959)
T d1wa5c_         494 L--IELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAEN  570 (959)
T ss_dssp             H--HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSC
T ss_pred             H--HHHHHHHHHHhCCCc-hhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHH
Confidence            1  246888899888665 8899999999999986532211      00    1223445555555533221  1   11


Q ss_pred             HHHHHHHHHhcc----CChhhHHHHHhcCChHHHHHhc----cCC-ChhHHHHHHHHHHHhhcCC-hHHHHHHHHcCCHH
Q psy9169         262 SDICWALSYISD----GHNDKIQAVVDTGVVPRLVELL----DSE-ETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQ  331 (440)
Q Consensus       262 ~~a~~~L~~l~~----~~~~~~~~l~~~g~~~~Lv~lL----~~~-~~~v~~~al~~L~nl~~~~-~~~~~~l~~~g~l~  331 (440)
                      ..++.++..+..    .-......     +++.|+.++    .++ ++.....+..+|+.+.... ++.... +...++|
T Consensus       571 ~~ll~~l~~ii~~~~~~~~~~~~~-----i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-l~~~l~p  644 (959)
T d1wa5c_         571 EFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMP  644 (959)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHH-HHHHHHH
Confidence            224444444332    21222222     234444433    222 3456667777888776532 333332 3345678


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHHh
Q psy9169         332 KMKKLLSSSRVNIVKEAAWTISNIT  356 (440)
Q Consensus       332 ~L~~ll~~~~~~i~~~a~~~L~nl~  356 (440)
                      .+..++..........+.-.++.+.
T Consensus       645 ~i~~~~~~~~~~~~~~~~~l~~~~~  669 (959)
T d1wa5c_         645 TFLTVFSEDIQEFIPYVFQIIAFVV  669 (959)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHH
Confidence            8888777665555555555555444

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.65  E-value=9.8  Score=32.75  Aligned_cols=194  Identities=11%  Similarity=0.091  Sum_probs=105.7

Q ss_pred             HHHHHhcCCHHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHhhhCCCCcHHHHHHHHHHHHhhhh
Q psy9169         152 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR  231 (440)
Q Consensus       152 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~nl~~~~~~~r~~i~~~g~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  231 (440)
                      ....++...+..|+.++.++++.=|+....+|.++-+.-...|..+.. .+-..+.+.+.......-...+++.++.+..
T Consensus       126 ~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~i~~if~~fi~e~~~~~gI~elLeil~sii~  204 (343)
T d2jaka1         126 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN  204 (343)
T ss_dssp             HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence            334455566888999999999999999999998887666667665543 3455666766654444456677778888887


Q ss_pred             CCCCCCCHHHHhhHHHHHHHhhcCCCHH-HHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhccCCChhHHHHHHHHH
Q psy9169         232 NKNPAPDFEKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV  310 (440)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~ll~~~d~~-i~~~a~~~L~~l~~~~~~~~~~l~~~g~~~~Lv~lL~~~~~~v~~~al~~L  310 (440)
                      +-..+.......-+...++.|.....-. .-..-..++......++.....+     +..|++.==..++.-...-+.-|
T Consensus       205 gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~-----i~~llk~WP~t~~~Kev~FL~el  279 (343)
T d2jaka1         205 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL  279 (343)
T ss_dssp             TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHH
T ss_pred             hccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHH
Confidence            7544444444444445555555543322 22333334444444343332221     22222221112222233334445


Q ss_pred             HHhhcC-ChHHHHHHHHcCCHHHHHHHhcCCChhHHHHHHHHH
Q psy9169         311 GNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI  352 (440)
Q Consensus       311 ~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~i~~~a~~~L  352 (440)
                      ..+... .+...+.+.. -+...+...+.+++..|.+.|....
T Consensus       280 ~~il~~~~~~~f~~~~~-~lf~~la~ci~S~h~qVAErAl~~w  321 (343)
T d2jaka1         280 EEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW  321 (343)
T ss_dssp             HHHHHTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred             HHHHHhCCHHHHHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            554432 2223222222 3566667777777777766655444