Psyllid ID: psy9205

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHEH
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHEEEEEEEEcccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccHEEEEEcHHHHHHHHHHHHHHHHEccHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcEHHHHHHHHHHHHHHHHHHcccHHHHHHHHHEEHccccEEEEEEEcccccHHHHHHccc
Coil and Loop (DISEMBL)
mskeqgfqITLNLPRAIWIAMPIVTLVYVCANVAYFTVLtkeemltspavAVTFGGKIYKELVWIIPILVAMstfggvngiLFTSARlfltgsqeghlpplfsYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGlislrftqpdlhrpikvhlsLPIIFLACCIFLvvvptirepmNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHEH
Flexible Loop (DISEMBL)
MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPAlllemheh
Low Complexity Region (SEG)
MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHEH
Disordered region (IsUnstruct)
******FQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLL*****
Disordered Region (DISOPRED)
MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE*
Disordered Region (DISEMBL)
MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHEH
Disordered Region (DISPRO)
*****GFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMH**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9N1Q4	535	Large neutral amino acids	yes	N/A	0.945	0.388	0.495	2e-51
Q5RAE3	535	Large neutral amino acids	yes	N/A	0.945	0.388	0.495	3e-51
Q9UHI5	535	Large neutral amino acids	no	N/A	0.945	0.388	0.495	3e-51
Q9QXW9	531	Large neutral amino acids	yes	N/A	0.909	0.376	0.509	4e-51
Q9WVR6	533	Large neutral amino acids	yes	N/A	0.945	0.390	0.490	6e-51
Q01650	507	Large neutral amino acids	no	N/A	0.931	0.404	0.483	2e-50
Q7YQK4	503	Large neutral amino acids	no	N/A	0.931	0.407	0.469	2e-49
P63116	530	Asc-type amino acid trans	no	N/A	0.940	0.390	0.456	2e-48
P63115	530	Asc-type amino acid trans	no	N/A	0.940	0.390	0.456	2e-48
Q9Z127	512	Large neutral amino acids	no	N/A	0.931	0.400	0.479	2e-47

>sp|Q9N1Q4|LAT2_RABIT Large neutral amino acids transporter small subunit 2 OS=Oryctolagus cuniculus GN=SLC7A8 PE=1 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 108/218 (49%), Positives = 147/218 (67%), Gaps = 10/218 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct: 264 NLPRAIFISIPLVTFVYVFANVAYITAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 323

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           CL ++LMLVTSD
Sbjct: 324 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSD 383

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           ++ LINY+    +L  G   AG I LR+ +PD+ RPIK++L  PII+L    FL++    
Sbjct: 384 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLIFSLW 443

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE 219
            EP+   I L I+ +GVPVY++ V W+ KP    +  E
Sbjct: 444 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKPKCFNDFIE 481

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.
Oryctolagus cuniculus (taxid: 9986)

>sp|Q5RAE3|LAT2_PONAB Large neutral amino acids transporter small subunit 2 OS=Pongo abelii GN=SLC7A8 PE=2 SV=2

 Score =  201 bits (512), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/218 (49%), Positives = 147/218 (67%), Gaps = 10/218 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct: 264 NLPRAIFISIPLVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 323

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           C+ ++LMLVTSD
Sbjct: 324 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSD 383

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           ++ LINY+    +L  G   AG I LR+ +PD+ RPIK++L  PII+L    FL+V    
Sbjct: 384 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLW 443

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE 219
            EP+   I L I+ +GVPVY++ V W+ KP    +  E
Sbjct: 444 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKPKCFSDFIE 481

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Pongo abelii (taxid: 9601)

>sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1

 Score =  201 bits (512), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 108/218 (49%), Positives = 147/218 (67%), Gaps = 10/218 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct: 264 NLPRAIFISIPLVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 323

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           C+ ++LMLVTSD
Sbjct: 324 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSD 383

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           ++ LINY+    +L  G   AG I LR+ +PD+ RPIK++L  PII+L    FL+V    
Sbjct: 384 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLW 443

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE 219
            EP+   I L I+ +GVPVY++ V W+ KP    +  E
Sbjct: 444 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKPKCFSDFIE 481

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Homo sapiens (taxid: 9606)

>sp|Q9QXW9|LAT2_MOUSE Large neutral amino acids transporter small subunit 2 OS=Mus musculus GN=Slc7a8 PE=1 SV=1

 Score =  201 bits (510), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 107/210 (50%), Positives = 144/210 (68%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAI+I++P+VT VYV AN+AY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct: 263 NLPRAIFISIPLVTFVYVFANIAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 322

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           CL ++LMLVTSD
Sbjct: 323 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSD 382

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           ++ LINY+    +L  G   AG I LR+ +PD+ RPIKV L  PII+L    FL++    
Sbjct: 383 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKVSLLFPIIYLLFWAFLLIFSLW 442

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
            EP+   I L I+ +GVPVY++ V W+ KP
Sbjct: 443 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKP 472

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Mus musculus (taxid: 10090)

>sp|Q9WVR6|LAT2_RAT Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1

 Score =  200 bits (509), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 107/218 (49%), Positives = 146/218 (66%), Gaps = 10/218 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAI+I++P+VT VYV AN+AY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct: 265 NLPRAIFISIPLVTFVYVFANIAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 324

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           CL ++LMLVTSD
Sbjct: 325 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSD 384

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           ++ LINY+    +L  G   AG I LR+ +PD+ RPIK+ L  PII+L    FL++    
Sbjct: 385 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKISLLFPIIYLLFWAFLLIFSLW 444

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE 219
            EP+   I L I+ +GVPVY++ V W+ KP    +  E
Sbjct: 445 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKPKCFNDFIE 482

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Rattus norvegicus (taxid: 10116)

>sp|Q01650|LAT1_HUMAN Large neutral amino acids transporter small subunit 1 OS=Homo sapiens GN=SLC7A5 PE=1 SV=2

 Score =  198 bits (504), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/215 (48%), Positives = 141/215 (65%), Gaps = 10/215 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLP AI I++PIVTLVYV  N+AYFT L+ E+ML+S AVAV FG      + WIIP+ V 
Sbjct: 273 NLPLAIIISLPIVTLVYVLTNLAYFTTLSTEQMLSSEAVAVDFGNYHLGVMSWIIPVFVG 332

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKI----------CLMSVLMLVTSD 121
           +S FG VNG LFTS+RLF  GS+EGHLP + S IH ++          C+M++L   + D
Sbjct: 333 LSCFGSVNGSLFTSSRLFFVGSREGHLPSILSMIHPQLLTPVPSLVFTCVMTLLYAFSKD 392

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           +F++IN+ S   WL V     G+I LR  +P+L RPIKV+L+LP+ F+  C+FL+ V   
Sbjct: 393 IFSVINFFSFFNWLCVALAIIGMIWLRHRKPELERPIKVNLALPVFFILACLFLIAVSFW 452

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLE 216
           + P+   I   II SG+PVY+  V WK+KP  LL+
Sbjct: 453 KTPVECGIGFTIILSGLPVYFFGVWWKNKPKWLLQ 487

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane in tissues such as placenta. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. May play an important role in high-grade gliomas. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Homo sapiens (taxid: 9606)

>sp|Q7YQK4|LAT1_RABIT Large neutral amino acids transporter small subunit 1 OS=Oryctolagus cuniculus GN=SLC7A5 PE=1 SV=1

 Score =  195 bits (496), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 139/215 (64%), Gaps = 10/215 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLP AI I++PI TLVYV  N+AYFT L+ E+ML S AVAV FG      + W+IP+ V 
Sbjct: 269 NLPLAIIISLPICTLVYVLTNLAYFTTLSPEQMLASEAVAVDFGNHHLGVMSWVIPVFVG 328

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKI----------CLMSVLMLVTSD 121
           +S FG VNG LFTS+RLF  GS+EGHLP + S IH ++          C M++L   + D
Sbjct: 329 LSCFGSVNGSLFTSSRLFFVGSREGHLPSVLSMIHPQLLTPVPSLVFTCAMTLLYAFSRD 388

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           +F++IN+ S   WL V     G++ LR+ +P+L RPIKV+L+LP+ F+  C+FL+ V   
Sbjct: 389 IFSVINFFSFFNWLCVALAIIGMMWLRYKKPELERPIKVNLALPVFFILACLFLIAVSFW 448

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLE 216
           + P+   I   II SG+PVY+  V WK+KP  LL+
Sbjct: 449 KTPVECGIGFTIILSGLPVYFFGVWWKNKPKWLLQ 483

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63116|AAA1_RAT Asc-type amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a10 PE=2 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 145/219 (66%), Gaps = 12/219 (5%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAI+I++P+VT VY   NVAYFT ++ +E+L+S AVAVTFG K+     W++P+ VA
Sbjct: 270 NLPRAIFISIPLVTFVYTFTNVAYFTAMSPQELLSSNAVAVTFGEKLLGYFSWVMPVSVA 329

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICL-----------MSVLMLVTS 120
           +STFGG+NG LFTS+RL  +G++EGHLP   + IH++ C             +V+MLV  
Sbjct: 330 LSTFGGINGYLFTSSRLCFSGAREGHLPSFLAMIHVRRCTPIPALLVCCGATAVIMLV-G 388

Query: 121 DVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPT 180
           D + LINY+S   +L  G    GL+ LR+ +P LHRPIKV+L +P+++L    FL+V   
Sbjct: 389 DTYTLINYVSFINYLCYGVTILGLLVLRWRRPALHRPIKVNLLVPVVYLVFWAFLLVFSF 448

Query: 181 IREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE 219
           I EPM   + + II +GVP++++ V W+SKP  +    E
Sbjct: 449 ISEPMVCGVGIIIILTGVPIFFLGVFWRSKPKCVHRFTE 487

Sodium-independent, high affinity transport of small neutral D- and L-amino acids and amino acid-related compounds. May play a role in the modulation of glutamatergic transmission through mobilization of D-serine at the glutamatergic synapse.

Rattus norvegicus (taxid: 10116)

>sp|P63115|AAA1_MOUSE Asc-type amino acid transporter 1 OS=Mus musculus GN=Slc7a10 PE=1 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 145/219 (66%), Gaps = 12/219 (5%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAI+I++P+VT VY   NVAYFT ++ +E+L+S AVAVTFG K+     W++P+ VA
Sbjct: 270 NLPRAIFISIPLVTFVYTFTNVAYFTAMSPQELLSSNAVAVTFGEKLLGYFSWVMPVSVA 329

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKICL-----------MSVLMLVTS 120
           +STFGG+NG LFTS+RL  +G++EGHLP   + IH++ C             +V+MLV  
Sbjct: 330 LSTFGGINGYLFTSSRLCFSGAREGHLPSFLAMIHVRRCTPIPALLVCCGATAVIMLV-G 388

Query: 121 DVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPT 180
           D + LINY+S   +L  G    GL+ LR+ +P LHRPIKV+L +P+++L    FL+V   
Sbjct: 389 DTYTLINYVSFINYLCYGVTILGLLVLRWRRPALHRPIKVNLLVPVVYLVFWAFLLVFSF 448

Query: 181 IREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE 219
           I EPM   + + II +GVP++++ V W+SKP  +    E
Sbjct: 449 ISEPMVCGVGIIIILTGVPIFFLGVFWRSKPKCVHRFTE 487

Sodium-independent, high affinity transport of small neutral D- and L-amino acids and amino acid-related compounds. May play a role in the modulation of glutamatergic transmission through mobilization of D-serine at the glutamatergic synapse.

Mus musculus (taxid: 10090)

>sp|Q9Z127|LAT1_MOUSE Large neutral amino acids transporter small subunit 1 OS=Mus musculus GN=Slc7a5 PE=1 SV=2

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/215 (47%), Positives = 141/215 (65%), Gaps = 10/215 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLP AI I++PIVTLVYV  N+AYFT L+  +MLTS AVAV FG      + WIIP+ V 
Sbjct: 278 NLPLAIIISLPIVTLVYVLTNLAYFTTLSTNQMLTSEAVAVDFGNYHLGVMSWIIPVFVG 337

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKI----------CLMSVLMLVTSD 121
           +S FG VNG LFTS+RLF  GS+EGHLP + S IH ++          C+M+++   + D
Sbjct: 338 LSCFGSVNGSLFTSSRLFFVGSREGHLPSVLSMIHPQLLTPVPSLVFTCIMTLMYAFSRD 397

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           +F++IN+ S   WL V     G++ LRF +P+L RPIKV+L+LP+ F+  C+FL+ V   
Sbjct: 398 IFSIINFFSFFNWLCVALAIIGMMWLRFKKPELERPIKVNLALPVFFILACLFLIAVSFW 457

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLE 216
           + PM   I   II SG+PVY+  V WK+KP  +L+
Sbjct: 458 KTPMECGIGFAIILSGLPVYFFGVWWKNKPKWILQ 492

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
91083817	486	PREDICTED: similar to cationic amino aci	0.909	0.411	0.609	5e-68
242019281	478	large neutral amino acids transporter, p	0.95	0.437	0.566	6e-66
195114550	502	GI14864 [Drosophila mojavensis] gi|19391	0.909	0.398	0.585	5e-65
195386628	502	GJ24006 [Drosophila virilis] gi|19414846	0.909	0.398	0.580	6e-65
195035393	503	GH10198 [Drosophila grimshawi] gi|193905	0.909	0.397	0.580	1e-64
195443052	506	GK21065 [Drosophila willistoni] gi|19416	0.909	0.395	0.571	2e-64
157103462	507	cationic amino acid transporter [Aedes a	0.904	0.392	0.583	3e-64
118777163	384	Anopheles gambiae str. PEST AGAP012643-P	0.904	0.518	0.569	6e-64
125986780	496	GA11552 [Drosophila pseudoobscura pseudo	0.909	0.403	0.580	1e-63
194861394	498	GG10278 [Drosophila erecta] gi|190661641	0.909	0.401	0.566	9e-63

>gi|91083817|ref|XP_973463.1| PREDICTED: similar to cationic amino acid transporter [Tribolium castaneum] gi|270006773|gb|EFA03221.1| hypothetical protein TcasGA2_TC013142 [Tribolium castaneum]

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 160/210 (76%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIA+P+VT VYV ANVAYF VL+  E+ +SPAVAV+FG K++    W++PI VA
Sbjct: 245 NLPRAIWIALPMVTGVYVLANVAYFAVLSGMEIESSPAVAVSFGLKMFGSFHWLVPIFVA 304

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNGILFTS+RLFLTGSQEGHLP LFS+IH+K           C+ S+ ML+ SD
Sbjct: 305 LSTFGGVNGILFTSSRLFLTGSQEGHLPDLFSFIHVKRMTPIPSLIFTCVTSLAMLLVSD 364

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           VF LINY    LW SV A  AG++ LR+ QPD+ RPI+V++S+PIIFL CC FLV+ P  
Sbjct: 365 VFVLINYYGQILWFSVAASIAGMLWLRYKQPDMPRPIRVNMSIPIIFLFCCAFLVIFPIP 424

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
            +P NTVI + I  SG+PVYY+CVKW++KP
Sbjct: 425 SQPWNTVIGVAITLSGIPVYYLCVKWQNKP 454

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019281|ref|XP_002430090.1| large neutral amino acids transporter, putative [Pediculus humanus corporis] gi|212515171|gb|EEB17352.1| large neutral amino acids transporter, putative [Pediculus humanus corporis]

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 160/219 (73%), Gaps = 10/219 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMPIVTLVYV AN+AYF V+   EML S AVAVTFG K++    W +PI VA
Sbjct: 240 NLPRAIWIAMPIVTLVYVAANLAYFAVIPPSEMLESSAVAVTFGNKMFGSFKWCVPIFVA 299

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNGILFTSARLF  G++E  LP +F++IH K           C +S++ML++SD
Sbjct: 300 LSTFGGVNGILFTSARLFFIGAEESQLPKVFAFIHHKRMTPVPSLLFTCALSLIMLISSD 359

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           VF LI+Y S  LWLSV A  AGL+ LR+ +P   RP+KV++++P+IFL CCIFL VVP I
Sbjct: 360 VFVLIDYFSQILWLSVAASIAGLLWLRYKKPQASRPVKVNVAIPVIFLLCCIFLTVVPII 419

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHEH 220
           ++P+NTVI + I  S +PVYYV V W+SKP  + + ++ 
Sbjct: 420 KKPLNTVIGMAITLSSIPVYYVTVAWQSKPKWINKFNQK 458

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114550|ref|XP_002001830.1| GI14864 [Drosophila mojavensis] gi|193912405|gb|EDW11272.1| GI14864 [Drosophila mojavensis]

 Score =  253 bits (645), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 123/210 (58%), Positives = 156/210 (74%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMP+VT +YV  N+AYF V++K EML+S AVAVTFG K++  L +++PI VA
Sbjct: 263 NLPRAIWIAMPLVTGIYVLVNLAYFAVVSKPEMLSSLAVAVTFGNKVFGPLAFMVPIFVA 322

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG+LFTSARLF TG+QEGHLP  F   H+K           CLMS+LML+T +
Sbjct: 323 LSTFGGVNGVLFTSARLFATGAQEGHLPKFFQLFHVKQQTPIPSLIFTCLMSLLMLLTEN 382

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           V+ LINY S  LWLSV A  AG++ LR  +PDL RPIKVHL+LPIIF+  C+ LV++P  
Sbjct: 383 VYELINYFSSVLWLSVVASIAGMLWLRHKKPDLPRPIKVHLALPIIFMTICVTLVLLPNF 442

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
           +EP N +I + I  +G+P YYVC+ WK KP
Sbjct: 443 KEPANLLIGIAITLAGIPFYYVCIAWKQKP 472

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386628|ref|XP_002052006.1| GJ24006 [Drosophila virilis] gi|194148463|gb|EDW64161.1| GJ24006 [Drosophila virilis]

 Score =  253 bits (645), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 156/210 (74%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMP+VT +YV  N+AYF V++K EML+S AVAVTFG K++  L +++PI VA
Sbjct: 263 NLPRAIWIAMPLVTGIYVLVNLAYFAVVSKPEMLSSLAVAVTFGNKVFGPLAFMVPIFVA 322

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG+LFTSARLF TG+QEGHLP  F   H+K           CLMS+LML+T +
Sbjct: 323 LSTFGGVNGVLFTSARLFATGAQEGHLPKFFQLFHVKQQTPIPSLIFTCLMSLLMLLTDN 382

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           V+ LINY S  LWLSV A  AG++ LR  +PDL RPIKVHL+LPI+F+  C+ LV++P  
Sbjct: 383 VYELINYFSSVLWLSVVASIAGMLWLRHKKPDLPRPIKVHLALPILFMTICVTLVLLPNF 442

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
           +EP N +I + I  +G+P YYVC+ WK KP
Sbjct: 443 KEPANLLIGIAITLAGIPFYYVCIAWKQKP 472

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035393|ref|XP_001989162.1| GH10198 [Drosophila grimshawi] gi|193905162|gb|EDW04029.1| GH10198 [Drosophila grimshawi]

 Score =  251 bits (642), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 156/210 (74%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMP+VT +YV  N+AYF V++K EML+S AVAVTFG K++  L +++PI VA
Sbjct: 264 NLPRAIWIAMPLVTGIYVLVNLAYFAVVSKPEMLSSLAVAVTFGNKVFGPLAFMVPIFVA 323

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG+LFTSARLF TG+QEGHLP  F   H+K           CLMS+LML+T +
Sbjct: 324 LSTFGGVNGVLFTSARLFATGAQEGHLPKFFQLFHVKQQTPIPSLIFACLMSLLMLLTEN 383

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           V+ LINY S  LWLSV A  AG++ LR  +P+L RPIKVHL+LPIIF+  C+ LV++P  
Sbjct: 384 VYELINYFSSVLWLSVVASIAGMLWLRHKKPNLPRPIKVHLALPIIFMTICVTLVLLPNF 443

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
           +EP N +I + I  +G+P YYVC+ WK KP
Sbjct: 444 KEPANLLIGIAITLAGIPFYYVCIAWKQKP 473

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195443052|ref|XP_002069253.1| GK21065 [Drosophila willistoni] gi|194165338|gb|EDW80239.1| GK21065 [Drosophila willistoni]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 155/210 (73%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMP+VT +YV  N+AYF V+ K EML+S AVAVTFG +++  L +++PI VA
Sbjct: 267 NLPRAIWIAMPLVTGIYVLVNLAYFAVVDKAEMLSSLAVAVTFGNRVFGPLAFMVPIFVA 326

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG+LFTSARLF TG+QEGHLP  F   H+K           CLMS+LML+T +
Sbjct: 327 LSTFGGVNGVLFTSARLFATGAQEGHLPKFFQLFHVKQQTPIPSLIFTCLMSLLMLLTDN 386

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           V++LINY S  LWLSV A  AG++ LR  +P+L RPIKVHL+LPIIF+  C  LV++P  
Sbjct: 387 VYSLINYFSSVLWLSVVASIAGMLWLRHKKPNLPRPIKVHLALPIIFMISCTTLVLLPNF 446

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
           +EP+N  I + I  +G+P YY+C+ WK KP
Sbjct: 447 KEPLNLTIGIIITLAGIPFYYICIAWKDKP 476

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103462|ref|XP_001647992.1| cationic amino acid transporter [Aedes aegypti] gi|108880523|gb|EAT44748.1| AAEL003919-PA [Aedes aegypti]

 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/209 (58%), Positives = 154/209 (73%), Gaps = 10/209 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMP+VT +YV  N+AYF V+ + +ML S AVAV FG +++  + W+IP+ VA
Sbjct: 247 NLPRAIWIAMPLVTGIYVLVNLAYFAVVPRHDMLASIAVAVNFGNRVFGPVAWLIPVFVA 306

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           MS FGGVNGILFTSARLF TG+QEGHLP  FS +H+            C+ S+LML+T +
Sbjct: 307 MSCFGGVNGILFTSARLFSTGAQEGHLPAWFSLVHVNRQTPIPALIFTCVTSILMLMTPN 366

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           V ALINY S  LWLSV AC AGL+ LR T+P++ RPI+V+L+LPIIFL CC+ LV++P+ 
Sbjct: 367 VVALINYFSQILWLSVAACIAGLLWLRVTKPNMPRPIRVNLALPIIFLTCCMVLVLLPSF 426

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSK 210
            EPMN +I + I  SGVPVYYVCV W   
Sbjct: 427 SEPMNLIIGMAITLSGVPVYYVCVVWNKN 455

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118777163|ref|XP_307630.3| Anopheles gambiae str. PEST AGAP012643-PA [Anopheles gambiae str. PEST] gi|116132995|gb|EAA03429.3| AGAP012643-PA [Anopheles gambiae str. PEST]

 Score =  249 bits (636), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 119/209 (56%), Positives = 159/209 (76%), Gaps = 10/209 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMP+VT +YV  N+AYF V++++EML S AVAV+FG +++  + W+IPI VA
Sbjct: 126 NLPRAIWIAMPMVTGIYVFVNMAYFAVVSRQEMLASIAVAVSFGNRMFGSVAWLIPIFVA 185

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNGILFTSARLF TG+QEGHLP  FS +H+            C+ S++ML++++
Sbjct: 186 LSTFGGVNGILFTSARLFSTGAQEGHLPAWFSLVHVDRQTPIPALIFTCITSIIMLLSAN 245

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           VF LINY S  LWLSV A  AGL+ LR ++P++ RPIKV+L+LPIIFL CC+ LV++P+ 
Sbjct: 246 VFVLINYFSQILWLSVAASIAGLLWLRISKPNMPRPIKVNLALPIIFLICCLGLVLLPSF 305

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSK 210
            EP N ++ L I  SGVP+YYVC+ W+S 
Sbjct: 306 TEPFNLLVGLAITLSGVPIYYVCIVWRSN 334

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125986780|ref|XP_001357153.1| GA11552 [Drosophila pseudoobscura pseudoobscura] gi|195160016|ref|XP_002020872.1| GL14136 [Drosophila persimilis] gi|54645481|gb|EAL34220.1| GA11552 [Drosophila pseudoobscura pseudoobscura] gi|194117822|gb|EDW39865.1| GL14136 [Drosophila persimilis]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 122/210 (58%), Positives = 152/210 (72%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMP+VT +YV  N+AYF V+ K EML+S AVAVTFG K++  L +++PI VA
Sbjct: 257 NLPRAIWIAMPLVTAIYVLVNLAYFVVVNKPEMLSSLAVAVTFGNKVFGPLAFMVPIFVA 316

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG+LFTSARLF TG+QEGHLP  F   H+K           CLMS+LML+T +
Sbjct: 317 LSTFGGVNGVLFTSARLFATGAQEGHLPKFFQLFHVKQQTPIPSLIFTCLMSLLMLLTDN 376

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           V+ LINY S  LWLSV A  AG++ LR  +PDL RPIKVHL LPI F+ CC+ LV++P  
Sbjct: 377 VYQLINYFSSVLWLSVVASIAGMLWLRHKKPDLPRPIKVHLVLPITFMVCCVTLVLLPNF 436

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
            EP N +I + I  +G+P YYV + WK KP
Sbjct: 437 EEPGNLLIGIAITLAGIPFYYVFIAWKQKP 466

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194861394|ref|XP_001969774.1| GG10278 [Drosophila erecta] gi|190661641|gb|EDV58833.1| GG10278 [Drosophila erecta]

 Score =  245 bits (625), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 154/210 (73%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
           NLPRAIWIAMP+VT +YV  N+AYF V+ K EML+S AVAVTFG +++  L +++PI VA
Sbjct: 259 NLPRAIWIAMPLVTGIYVLVNLAYFAVVNKPEMLSSLAVAVTFGNRVFGPLAFMVPIFVA 318

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +STFGGVNG+LFTSARLF TG+QEGHLP  F   H+K           CLMS+LML+T +
Sbjct: 319 LSTFGGVNGVLFTSARLFATGAQEGHLPKFFQLFHVKQQTPIPSLIFTCLMSLLMLLTDN 378

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           V+ LINY S  LWLSV A  AG++ LR  +PDL RPIKVH++LPIIF+  C+ LV++P +
Sbjct: 379 VYQLINYFSSVLWLSVVASIAGMLWLRHKRPDLPRPIKVHIALPIIFMVSCVTLVLLPNL 438

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
            EP N +I + I  +G+P YY  + WK+KP
Sbjct: 439 EEPQNLLIGIGITLAGIPFYYAFIAWKNKP 468

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
FB|FBgn0028425	500	JhI-21 "JhI-21" [Drosophila me	0.909	0.4	0.561	2.2e-59
UNIPROTKB|Q9TU26	505	LAT "Blood-brain barrier large	0.931	0.405	0.488	8.3e-51
ZFIN|ZDB-GENE-030616-586	531	slc7a8b "solute carrier family	0.913	0.378	0.502	2.8e-50
UNIPROTKB|F1MYX6	528	SLC7A8 "Uncharacterized protei	0.909	0.378	0.504	5.8e-50
UNIPROTKB|Q9N1Q4	535	SLC7A8 "Large neutral amino ac	0.909	0.373	0.509	5.8e-50
UNIPROTKB|B4DKT4	430	SLC7A8 "cDNA FLJ53351, highly	0.909	0.465	0.509	9.5e-50
UNIPROTKB|B4DTV6	311	SLC7A8 "Large neutral amino ac	0.909	0.643	0.509	9.5e-50
UNIPROTKB|F2Z2J4	332	SLC7A8 "Large neutral amino ac	0.909	0.602	0.509	9.5e-50
UNIPROTKB|Q9UHI5	535	SLC7A8 "Large neutral amino ac	0.909	0.373	0.509	9.5e-50
MGI|MGI:1355323	531	Slc7a8 "solute carrier family	0.909	0.376	0.509	1.2e-49

FB|FBgn0028425 JhI-21 "JhI-21" [Drosophila melanogaster (taxid:7227)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 118/210 (56%), Positives = 151/210 (71%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLPRAIWIAMP+VT +YV  N+AYF V+ K EML+S AVAVTFG +++  L +++PI VA
Sbjct:   261 NLPRAIWIAMPLVTSIYVLVNLAYFAVVNKPEMLSSLAVAVTFGNRVFGPLAFMVPIFVA 320

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
             +STFGGVNG+LFTSARLF TG+QEGHLP  F   H+K           CLMS+LML+T +
Sbjct:   321 LSTFGGVNGVLFTSARLFATGAQEGHLPKFFQLFHVKQQTPIPSLIFTCLMSLLMLLTDN 380

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             V+ LINY S  LWLSV A  AG++ LR  +PDL RPIKVHL+LPI F+  C+ LV++P +
Sbjct:   381 VYQLINYFSSVLWLSVVASIAGMLWLRHKRPDLPRPIKVHLALPITFMVSCVTLVLLPNL 440

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
              EP N +I + I  +G+P YY  +  K KP
Sbjct:   441 EEPQNLLIGIGITLAGIPFYYAFIARKKKP 470

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=NAS

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060356 "leucine import" evidence=IMP

UNIPROTKB|Q9TU26 LAT "Blood-brain barrier large neutral amino acid transporter" [Bos taurus (taxid:9913)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 105/215 (48%), Positives = 143/215 (66%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLP AI I++PIVTLVYV  N+AYFT LT E+MLTS AVAV FG      + WIIP+ V 
Sbjct:   271 NLPLAIIISLPIVTLVYVLTNLAYFTTLTPEQMLTSEAVAVDFGNYHLGVMSWIIPVFVG 330

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIKI----------CLMSVLMLVTSD 121
             +S FG VNG LFTS+RLF  G++EGHLP + S IH ++          C+M++L   + D
Sbjct:   331 LSCFGSVNGSLFTSSRLFFVGAREGHLPSILSMIHPRLLTPVPSLVFTCIMTLLYAFSKD 390

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             +F++IN+ S   WL V    AG++ LR+ +P+L RPIKVHL+LP+ F+  C+FL+ V   
Sbjct:   391 IFSVINFFSFFNWLCVALAIAGMLWLRYQKPELERPIKVHLALPVFFILACLFLIAVSFW 450

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKPALLLE 216
             + P+   I   II SG+PVY++ V W+ KP  LL+
Sbjct:   451 KTPVECGIGFTIILSGLPVYFLGVWWRDKPKWLLQ 485

GO:0015196 "L-tryptophan transmembrane transporter activity" evidence=IDA

GO:0015820 "leucine transport" evidence=IDA

GO:0015192 "L-phenylalanine transmembrane transporter activity" evidence=IDA

GO:0015190 "L-leucine transmembrane transporter activity" evidence=IDA

GO:0015823 "phenylalanine transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030616-586 slc7a8b "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8b" [Danio rerio (taxid:7955)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 106/211 (50%), Positives = 144/211 (68%)

Query:    11 LNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILV 70
             +NLPRAI+I++P+VT VYV AN+AY T ++ +E+L S AVAVTFG K+   + WI+PI V
Sbjct:   262 VNLPRAIFISIPLVTFVYVFANIAYVTAMSPQELLASNAVAVTFGEKLLGVMSWIMPISV 321

Query:    71 AMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTS 120
             A+STFGGVNG LFTS+RLF  G++EGHLP L + IH+K           C+ ++LML TS
Sbjct:   322 ALSTFGGVNGSLFTSSRLFFAGAREGHLPSLLAMIHVKRCTPIPALLFTCISTLLMLCTS 381

Query:   121 DVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPT 180
             D++ LINY+    +L  G   AG I LR  QPD+HRPIK+ L  P+I+L    FL++   
Sbjct:   382 DMYTLINYVGFINYLFYGVTVAGQIVLRIKQPDMHRPIKISLVWPVIYLLFWAFLLIFSL 441

Query:   181 IREPMNTVISLFIIASGVPVYYVCVKWKSKP 211
               EP+   I L I+ +GVPVY++ V W +KP
Sbjct:   442 YSEPVVCGIGLAIMLTGVPVYFLGVYWDNKP 472

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MYX6 SLC7A8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 106/210 (50%), Positives = 145/210 (69%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct:   261 NLPRAIFISIPLVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 320

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
             +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           C+ ++LMLVT D
Sbjct:   321 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTGD 380

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             ++ LINY+    +L  G   AG I LR+ +PD++RPIKV+L  PII+L    FL+V    
Sbjct:   381 IYTLINYVGFINYLFYGVTVAGQIVLRWKKPDINRPIKVNLLFPIIYLLFWAFLLVFSLW 440

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
              EP+   I L I+ +GVPVY++ + W+ KP
Sbjct:   441 SEPVVCGIGLAIMVTGVPVYFLGIYWQHKP 470

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

GO:0015101 "organic cation transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9N1Q4 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Oryctolagus cuniculus (taxid:9986)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 107/210 (50%), Positives = 145/210 (69%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct:   264 NLPRAIFISIPLVTFVYVFANVAYITAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 323

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
             +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           CL ++LMLVTSD
Sbjct:   324 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSD 383

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             ++ LINY+    +L  G   AG I LR+ +PD+ RPIK++L  PII+L    FL++    
Sbjct:   384 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLIFSLW 443

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
              EP+   I L I+ +GVPVY++ V W+ KP
Sbjct:   444 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKP 473

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0042605 "peptide antigen binding" evidence=IPI

UNIPROTKB|B4DKT4 SLC7A8 "cDNA FLJ53351, highly similar to Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 107/210 (50%), Positives = 145/210 (69%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct:   159 NLPRAIFISIPLVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 218

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
             +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           C+ ++LMLVTSD
Sbjct:   219 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSD 278

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             ++ LINY+    +L  G   AG I LR+ +PD+ RPIK++L  PII+L    FL+V    
Sbjct:   279 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLW 338

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
              EP+   I L I+ +GVPVY++ V W+ KP
Sbjct:   339 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKP 368

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|B4DTV6 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 107/210 (50%), Positives = 145/210 (69%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct:    40 NLPRAIFISIPLVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 99

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
             +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           C+ ++LMLVTSD
Sbjct:   100 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSD 159

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             ++ LINY+    +L  G   AG I LR+ +PD+ RPIK++L  PII+L    FL+V    
Sbjct:   160 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLW 219

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
              EP+   I L I+ +GVPVY++ V W+ KP
Sbjct:   220 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKP 249

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F2Z2J4 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 107/210 (50%), Positives = 145/210 (69%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct:    61 NLPRAIFISIPLVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 120

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
             +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           C+ ++LMLVTSD
Sbjct:   121 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSD 180

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             ++ LINY+    +L  G   AG I LR+ +PD+ RPIK++L  PII+L    FL+V    
Sbjct:   181 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLW 240

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
              EP+   I L I+ +GVPVY++ V W+ KP
Sbjct:   241 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKP 270

GO:0016020 "membrane" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q9UHI5 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
 Identities = 107/210 (50%), Positives = 145/210 (69%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLPRAI+I++P+VT VYV ANVAY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct:   264 NLPRAIFISIPLVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 323

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
             +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           C+ ++LMLVTSD
Sbjct:   324 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSD 383

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             ++ LINY+    +L  G   AG I LR+ +PD+ RPIK++L  PII+L    FL+V    
Sbjct:   384 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLW 443

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
              EP+   I L I+ +GVPVY++ V W+ KP
Sbjct:   444 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKP 473

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=EXP;ISS;IDA

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0042605 "peptide antigen binding" evidence=ISS

GO:0006865 "amino acid transport" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009636 "response to toxic substance" evidence=NAS

GO:0055065 "metal ion homeostasis" evidence=NAS

GO:0015101 "organic cation transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019534 "toxin transporter activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0015695 "organic cation transport" evidence=IDA

MGI|MGI:1355323 Slc7a8 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8" [Mus musculus (taxid:10090)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 107/210 (50%), Positives = 144/210 (68%)

Query:    12 NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
             NLPRAI+I++P+VT VYV AN+AY T ++ +E+L S AVAVTFG K+   + WI+PI VA
Sbjct:   263 NLPRAIFISIPLVTFVYVFANIAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVA 322

Query:    72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
             +STFGGVNG LFTS+RLF  G++EGHLP + + IH+K           CL ++LMLVTSD
Sbjct:   323 LSTFGGVNGSLFTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSD 382

Query:   122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
             ++ LINY+    +L  G   AG I LR+ +PD+ RPIKV L  PII+L    FL++    
Sbjct:   383 MYTLINYVGFINYLFYGVTVAGQIVLRWKKPDIPRPIKVSLLFPIIYLLFWAFLLIFSLW 442

Query:   182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
              EP+   I L I+ +GVPVY++ V W+ KP
Sbjct:   443 SEPVVCGIGLAIMLTGVPVYFLGVYWQHKP 472

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005275 "amine transmembrane transporter activity" evidence=ISA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO;ISA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=ISO;ISA

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISO

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IDA

GO:0015695 "organic cation transport" evidence=ISO

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=ISO

GO:0055085 "transmembrane transport" evidence=ISA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9QXW9	LAT2_MOUSE	No assigned EC number	0.5095	0.9090	0.3766	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	220
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	3e-69
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	3e-10
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	3e-09
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	2e-08
TIGR03813	474	TIGR03813, put_Glu_GABA_T, putative glutamate/gamm	0.001
TIGR00908	442	TIGR00908, 2A0305, ethanolamine permease	0.002

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  219 bits (560), Expect = 3e-69
 Identities = 97/210 (46%), Positives = 138/210 (65%), Gaps = 10/210 (4%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVA 71
            LP AI I+MPIVT +YV  N+AYFTVL+ EE+L S AVAV FG ++   + W +P LV 
Sbjct: 267 TLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVG 326

Query: 72  MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSD 121
           +S FG VNG LF+S+RLF  G +EGHLP L S IH+K          +C +++LML + D
Sbjct: 327 LSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGD 386

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           +++LIN +S A WL      AGL+ LR+ +P+++RPIKV L  P+ FL  C+FL+++   
Sbjct: 387 IYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLY 446

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSKP 211
             P+   +   I+ +GVPVY+  V W++KP
Sbjct: 447 SPPVGCGVGFIIMLTGVPVYFFGVWWQNKP 476

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 43/203 (21%), Positives = 92/203 (45%), Gaps = 21/203 (10%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELV-----WII 66
           ++P+A++I + IV ++Y+  N+ +  V+  +E+    +   +    +++ +       I+
Sbjct: 218 DVPKALFIGLLIVGVLYLLVNILFLGVVPDDEI-AKLSNLPSVAALLFEAVGGPWGAIIV 276

Query: 67  PILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH--------------IKICLM 112
            IL+A+S  G VN  +  S+R+    +++G LP  F+ ++              + + L+
Sbjct: 277 VILLALSLLGAVNTAIVASSRVLEALARDGVLPKFFAKVNKFGSPVRALILTAILSLILL 336

Query: 113 SVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACC 172
            + +L  +   AL++  +V   L       GL+ LR  +PDL R       + I+ +   
Sbjct: 337 LLFLLSGAAYNALLSLSAVGYLLVYLLLIIGLLILRKKRPDLPRIKGRWP-VAILAILFI 395

Query: 173 IFLVVVPTIREPMNTVISLFIIA 195
           +FL+V         +  S    A
Sbjct: 396 LFLLVALFFPPGGPSTGSNLNYA 418

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 23/229 (10%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP---AVAVTFGGKIYKELVWIIPI 68
            +PRAI +++ IV ++Y+   +    VL   ++  S     +A+            II I
Sbjct: 233 TIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAI 292

Query: 69  LVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH---------------IKICLMS 113
           L  +S FG +   +   +R+    +++G LP  F+ ++               I + L+ 
Sbjct: 293 LALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLL 352

Query: 114 VLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIK-----VHLSLPIIF 168
           +  L +    AL++  SVA  ++       L+ LR  +PDL RP +     +   L I+ 
Sbjct: 353 LFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVA 412

Query: 169 LACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEM 217
           +   ++ +    +   +  VI +        + Y+ +       L+ E 
Sbjct: 413 VLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGRLLSAILIAEA 461

Length = 466

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 24/209 (11%)

Query: 12  NLPRAIWIAMPIVTLVYVCAN-----VAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWII 66
           ++P+AI +++ +VTL+YV           +  L       S  V    G  I      I+
Sbjct: 227 DIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLS-LVGYDLGQGIGG---LIL 282

Query: 67  PILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLM 116
                 S    +   ++ ++R+    S++G LP   S +H K            L + L+
Sbjct: 283 TAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALL 342

Query: 117 LVTSDVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLS--LPIIFLACCIF 174
                +  L    S+   ++  A    +I LR  +PD+ R  +  L   LP++ ++ CI+
Sbjct: 343 ASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIY 402

Query: 175 LVVVPTIREPMNTVISLFIIASGVPVYYV 203
           L++      P  TV  L  +  G   Y++
Sbjct: 403 LLLNLG---PGTTVWFLVWMLLGSVFYFI 428

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 21/170 (12%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKI-YKELVWIIPILV 70
           N P AI IA     L++V   +A   ++ +E++  + ++ V F     +  L W+ PIL 
Sbjct: 226 NYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILA 285

Query: 71  AMSTFGGVNGILFTSA---RLFLTGSQEGHLPPLFSYIH-------------IKICLMSV 114
                G + G++   A      L  ++ G+LP  F   +             I + ++SV
Sbjct: 286 FALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTNKNGMPIHIMFVQGIAVSVLSV 345

Query: 115 LMLVTSDV---FALINYMSVALWLSVGACT-AGLISLRFTQPDLHRPIKV 160
           L +V   V   F +++ ++V L+L +     A  I LR++QPD  RP ++
Sbjct: 346 LFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRI 395

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. Length = 474

>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 21/219 (9%)

Query: 1   MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFT--VLTKEEMLTSPAVAVTFGGKI 58
           M+ E+      ++PR +  A+  +TL+ + A +          +E++ S          I
Sbjct: 212 MAAEETKNPKRDIPRGLIGAI--LTLLALAAGILVVGPGAADAKELMGSNNPLPEALESI 269

Query: 59  YKELVWIIPILVAMSTFGGV---NGILFTSARLFLTGSQEGHLPPLFSYIHIK------I 109
           Y    W+   +  +  FG +   +GI++  +R     S+ G+LP   S ++ K      I
Sbjct: 270 YGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVNRKKAPVLAI 329

Query: 110 CLMSV--LMLVTSDVFALINYMSV-ALWLSVGACTAGLISLRFTQPDLHRPIKVHLS--L 164
            +  V    L  +   ALI  +SV    +S     A   +LR  +PD+ RP +       
Sbjct: 330 VVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILT 389

Query: 165 PIIFLAC-CIFLVVVPTIREPMNTVISLFIIASGVPVYY 202
           P + L   C+ LV           V+    I   +  YY
Sbjct: 390 PGVALVLACVALVT--GFYVDPRVVVGAVAIFVVLIGYY 426

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
KOG1287|consensus	479		100.0
TIGR00911	501	2A0308 L-type amino acid transporter.	100.0
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.98
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.97
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.97
PRK10655	438	potE putrescine transporter; Provisional	99.97
TIGR00909	429	2A0306 amino acid transporter.	99.97
PRK11387	471	S-methylmethionine transporter; Provisional	99.96
PRK10644	445	arginine:agmatin antiporter; Provisional	99.96
PRK15049	499	L-asparagine permease; Provisional	99.96
TIGR00913	478	2A0310 amino acid permease (yeast).	99.96
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.96
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.96
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.96
PRK10746	461	putative transport protein YifK; Provisional	99.96
PRK10836	489	lysine transporter; Provisional	99.95
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.95
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.95
PRK10580	457	proY putative proline-specific permease; Provision	99.95
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.95
PRK10249	458	phenylalanine transporter; Provisional	99.95
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.95
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.95
PRK10238	456	aromatic amino acid transporter; Provisional	99.94
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.94
PRK11021	410	putative transporter; Provisional	99.94
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.94
TIGR00930	953	2a30 K-Cl cotransporter.	99.93
KOG1286|consensus	554		99.92
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.91
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.91
PRK15238	496	inner membrane transporter YjeM; Provisional	99.91
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.9
KOG1289|consensus	550		99.9
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.89
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.87
KOG2082|consensus	1075		99.74
KOG1288|consensus	945		99.52
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	99.17
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.06
KOG2083|consensus	643		98.76
PHA02764	399	hypothetical protein; Provisional	97.69
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.34
PF13906	51	AA_permease_C: C-terminus of AA_permease	97.16
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.0
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	96.53
PRK10483	414	tryptophan permease; Provisional	96.26
PRK15132	403	tyrosine transporter TyrP; Provisional	96.13
COG3949	349	Uncharacterized membrane protein [Function unknown	96.01
PRK09664	415	tryptophan permease TnaB; Provisional	95.89
KOG1304|consensus	449		95.32
PRK11375	484	allantoin permease; Provisional	95.31
PF02705	534	K_trans: K+ potassium transporter; InterPro: IPR00	95.06
PRK13629	443	threonine/serine transporter TdcC; Provisional	94.94
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	94.39
KOG1303|consensus	437		93.94
TIGR00814	397	stp serine transporter. The HAAAP family includes	93.82
PRK15433	439	branched-chain amino acid transport system 2 carri	93.04
PLN03074	473	auxin influx permease; Provisional	92.56
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	92.02
PF01566	358	Nramp: Natural resistance-associated macrophage pr	91.75
PTZ00206	467	amino acid transporter; Provisional	90.97
COG1953	497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	90.41
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	89.99
TIGR00794	688	kup potassium uptake protein. Proteins of the KUP	89.7
KOG1305|consensus	411		89.25
PRK09442	483	panF sodium/panthothenate symporter; Provisional	88.66
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	88.62
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	86.79
PRK00701	439	manganese transport protein MntH; Reviewed	86.17
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	86.08
PRK10745	622	trkD potassium transport protein Kup; Provisional	86.07
PLN00151	852	potassium transporter; Provisional	84.4
TIGR00813	407	sss transporter, SSS family. have different number	84.33
PLN00150	779	potassium ion transporter family protein; Provisio	83.91
PF14256	129	YwiC: YwiC-like protein	82.97

>KOG1287|consensus

Probab=100.00  E-value=3.7e-37  Score=255.73  Aligned_cols=219  Identities=48%  Similarity=0.851  Sum_probs=204.6

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      +.+||+|||+||+|||+..++.++++.|++++++.+.+++.||+.+++.++..+++..+|.+.+.+.+.+.++.+|+.|+
T Consensus       225 ~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~  304 (479)
T KOG1287|consen  225 YVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNS  304 (479)
T ss_pred             cchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhh
Confidence            46899999999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFT  150 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~  150 (220)
                      .++++||.++++||+|+||+.|++.|++          .++++++....+|++++++..++..++.+.+..++++++|+|
T Consensus       305 ~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k  384 (479)
T KOG1287|consen  305 VIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWK  384 (479)
T ss_pred             HHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999998          445555666677999999999999999999999999999999


Q ss_pred             CCCCCCCcccchHHHHHHHHHHHHHHHhhcccC-chHHHHHHHHHHHhhhhhhhehhhhccchhhhhhhc
Q psy9205         151 QPDLHRPIKVHLSLPIIFLACCIFLVVVPTIRE-PMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMHE  219 (220)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  219 (220)
                      +|+.+||+|.|...|++.+..+++++..++..+ +....++++.++.|+++|+...+++.||+|.++..|
T Consensus       385 ~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~  454 (479)
T KOG1287|consen  385 HPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKISE  454 (479)
T ss_pred             CCCCCCCEeeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHhhH
Confidence            999999999999999999999999999999988 566889999999999999999999999999887744

>TIGR00911 2A0308 L-type amino acid transporter

Probab=100.00  E-value=1.9e-32  Score=236.49  Aligned_cols=213  Identities=46%  Similarity=0.873  Sum_probs=181.0

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGI   81 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (220)
                      .+||+|||+|++|||+..++.+++++|++.+++.....|.+++.+++++...+.+...|..+.++.+...++.+++.++.
T Consensus       257 ~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~  336 (501)
T TIGR00911       257 VTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGS  336 (501)
T ss_pred             hHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999998888998887765555556666666556788888899999999999


Q ss_pred             HhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy9205          82 LFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFTQ  151 (220)
Q Consensus        82 ~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~  151 (220)
                      +.+.||++++|||||.+|++|+|+|+|          ..+++++....++++++.++.++..++.|.+..++++++|+|+
T Consensus       337 ~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~  416 (501)
T TIGR00911       337 LFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKR  416 (501)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccC
Confidence            999999999999999999999999987          2333444445577888888889999999999999999999999


Q ss_pred             CCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccchhh
Q psy9205         152 PDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALL  214 (220)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  214 (220)
                      |+.+||||.|.+.+.++++.++++++.+.+.++.....+.+++++|.++|+...++++++++.
T Consensus       417 p~~~rp~r~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~  479 (501)
T TIGR00911       417 PEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKWF  479 (501)
T ss_pred             CCCCCCccCchHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            999999999998888888888888888777777666777888889998888655666666664

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.98  E-value=6.5e-31  Score=228.59  Aligned_cols=208  Identities=20%  Similarity=0.228  Sum_probs=173.5

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      +.+||+|||+||+|||+..++.+++++|++.+.+.....|+++++.+++....+.....++...++.++.+++.+++.++
T Consensus       252 ~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~  331 (557)
T TIGR00906       252 TTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLG  331 (557)
T ss_pred             HhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999887766555554443334445678889999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFT  150 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~  150 (220)
                      .+++.+|++++|||||.+|++|+|+|+|          .++++.++....+++.+.++.+++.++.|.+..++.+++|++
T Consensus       332 ~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~  411 (557)
T TIGR00906       332 GMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQ  411 (557)
T ss_pred             HHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999977          334444444556788899999999999999999999888843


Q ss_pred             --------------------------------------------------------------------------------
Q psy9205         151 --------------------------------------------------------------------------------  150 (220)
Q Consensus       151 --------------------------------------------------------------------------------  150 (220)
                                                                                                      
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (557)
T TIGR00906       412 PGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVL  491 (557)
T ss_pred             ccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----CCCC--CCCcccch--HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccc
Q psy9205         151 ----QPDL--HRPIKVHL--SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKP  211 (220)
Q Consensus       151 ----~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  211 (220)
                          +|+.  +|+||.|.  ++|.+++..+++++..   -+..++.....|+.+|.++|+.|.++|+++
T Consensus       492 ~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~---l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~  557 (557)
T TIGR00906       492 TIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQ---LDADTWVRFAIWMAIGFLIYFLYGIRHSLE  557 (557)
T ss_pred             HHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence                3333  57799998  8999999999999962   244566677789999999999999888763

>TIGR00908 2A0305 ethanolamine permease

Probab=99.97  E-value=2.1e-30  Score=220.80  Aligned_cols=209  Identities=17%  Similarity=0.177  Sum_probs=163.7

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc---hhHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE---LVWIIPILVAMSTFGGV   78 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~   78 (220)
                      .+||+|||+||+|||+..++..+.++|+.......+..+.+++.+++.+.....+..+|.   ...++.+...++.+++.
T Consensus       213 ~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~  292 (442)
T TIGR00908       213 AAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASF  292 (442)
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999988777777778888765544444444544442   34567777788889999


Q ss_pred             HHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9205          79 NGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRF  149 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~  149 (220)
                      ++.+.+.+|++++|||||.+|++|+|+|++         +.+++++....++.+.+.++.++..++.|.++.++++++|+
T Consensus       293 ~~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~  372 (442)
T TIGR00908       293 HGIIYGYSRQIFALSRAGYLPESLSKVNRKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRI  372 (442)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999955         33444444455566678899999999999999999999999


Q ss_pred             cCCCCCCCcccch--HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhcc
Q psy9205         150 TQPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSK  210 (220)
Q Consensus       150 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  210 (220)
                      ++|+.+||||.|.  +.++++++.+++.++..+..++........+.+++.++|+.+.|+|++
T Consensus       373 ~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  435 (442)
T TIGR00908       373 RRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLV  435 (442)
T ss_pred             cCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhhhchhh
Confidence            9999999999986  788888888888887666655544444556666666667665444443

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.97  E-value=2.4e-30  Score=220.56  Aligned_cols=208  Identities=14%  Similarity=0.217  Sum_probs=168.1

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHH--hccc-hhHHHHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGK--IYKE-LVWIIPILVAMSTFGG   77 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~-~~~~~~~~~~~~~~~~   77 (220)
                      +.+||+|||+||+|||+..++.+++++|++.+.+.....|.+++.+++.+.....+.  ..|. .+.++.+...++.+++
T Consensus       216 ~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  295 (445)
T PRK11357        216 YMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGS  295 (445)
T ss_pred             hhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999999999999999999999999887655444444443  2444 3567777888899999


Q ss_pred             HHHHHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9205          78 VNGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISL  147 (220)
Q Consensus        78 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  147 (220)
                      .++.+.+.+|++++|+|||.+|++|+|+|||          ++++++++....+++++.+..+...++.|.+...+.+++
T Consensus       296 ~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~l  375 (445)
T PRK11357        296 LSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWC  375 (445)
T ss_pred             HHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            9999999999999999999999999999976          344555555567888899999999999999988898888


Q ss_pred             hccCCCCCCCcccch--HHHHHHHHHHHHHHHhhcccCchH-HHHHHHHHHHhhhhhhhehhhhc
Q psy9205         148 RFTQPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIREPMN-TVISLFIIASGVPVYYVCVKWKS  209 (220)
Q Consensus       148 r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~  209 (220)
                      |+++ +.+||||.|.  ..++++++.+++++..+...++.. ...++.++++|.++|+.++++++
T Consensus       376 r~~~-~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~  439 (445)
T PRK11357        376 RKRD-DYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSR  439 (445)
T ss_pred             ecCC-CCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence            8765 5678999987  688888888888877665556654 34577888899998886555543

>PRK10655 potE putrescine transporter; Provisional

Probab=99.97  E-value=1.1e-29  Score=216.05  Aligned_cols=204  Identities=17%  Similarity=0.175  Sum_probs=162.8

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVN   79 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~   79 (220)
                      +.+||+|||+||+|||+..+..+++++|++...+.....|.+++.+++.+.....++.+|+ .+.++.+..+++.+++.+
T Consensus       210 ~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~  289 (438)
T PRK10655        210 ANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLL  289 (438)
T ss_pred             hhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999888888889888766554544445555555 467888888899999999


Q ss_pred             HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV-------TSDVFALINYMSVALWLSVGACTAG  143 (220)
Q Consensus        80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~  143 (220)
                      +.+.+.+|++++|+|||.+|++|+|+||+         ..+++.++..       .++++.+.++.++..++.|.+..++
T Consensus       290 ~~~~~~sR~~~~~a~dg~lP~~~~~v~~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~  369 (438)
T PRK10655        290 GWQFTIAQVFKSSADEGYFPKIFSRVTKVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAA  369 (438)
T ss_pred             HHHHHHHHHHHHHhcCCchhHHHHhhCcCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999976         2222222211       2457789999999999999999999


Q ss_pred             HHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhh
Q psy9205         144 LISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKW  207 (220)
Q Consensus       144 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  207 (220)
                      .+++|+++|+.+||||.+..++.++.+.+++.+.   ..+......+..++++|.++|...+++
T Consensus       370 ~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~~~~~  430 (438)
T PRK10655        370 LVIIQKVANVPPSKAKVANFIAFVGALYSFYALY---SSGEEAMLYGSIVTFLGWTLYGLISPR  430 (438)
T ss_pred             HHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998888889999877778888877776553   223334566788889999888654433

>TIGR00909 2A0306 amino acid transporter

Probab=99.97  E-value=3.9e-29  Score=212.23  Aligned_cols=199  Identities=23%  Similarity=0.352  Sum_probs=165.7

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+|++|||+..++.++.++|++.+.+.....|.+++.+++.+.....++..+. ...++.+..+++.+++.++
T Consensus       217 ~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  296 (429)
T TIGR00909       217 AAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLA  296 (429)
T ss_pred             hHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999988889888777655555555555554 4688999999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFT  150 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~  150 (220)
                      .+.+.||++++|+|||.+|++|+|+|+|          ...++++.....+++.+.++.+...++.|.+.+++.+++|+|
T Consensus       297 ~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~  376 (429)
T TIGR00909       297 GIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRR  376 (429)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999976          233444444456788899999999999999999999999999


Q ss_pred             CCCCCCCcccch--HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhh
Q psy9205         151 QPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYV  203 (220)
Q Consensus       151 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  203 (220)
                      +|+.+||||.|.  +.+.+.++.+.++..   ..++.......++.++|.++|..
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~  428 (429)
T TIGR00909       377 RPDIQRAFRCPLVPVLPVLVVSYCIYLLL---NLGPGTTVWFLVWMLLGSVFYFI  428 (429)
T ss_pred             cCCCCCCCCCCcchHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHHHHHc
Confidence            999999999887  556665666665553   34556677888999999998864

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.96  E-value=7.3e-29  Score=212.72  Aligned_cols=207  Identities=16%  Similarity=0.157  Sum_probs=158.7

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYK-ELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+||+|||+..++..+.++|++..++.....|.++...++.+.....++..+ +...++.++++++.+++.++
T Consensus       228 ~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~  307 (471)
T PRK11387        228 AAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANS  307 (471)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999988888988766544444444555444 45688899999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      .++++||++++|||||.+|++|+|+|++         ..+++.+...      ...+..+.++++...++.|.+..++.+
T Consensus       308 ~~~~~sR~l~a~ardg~lP~~f~~~~~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i  387 (471)
T PRK11387        308 GLYASGRMLWSLSNEGTLPACFARLTKRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHF  387 (471)
T ss_pred             HHHHhhHHHHHHHhcCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977         1111111111      123456788899999999999999999


Q ss_pred             hhhccCCC-----CCCCcccch--HHHHHHHHHHHHHHHhhcccCch--HHHHHHHHHHHhhhhhhhehhhh
Q psy9205         146 SLRFTQPD-----LHRPIKVHL--SLPIIFLACCIFLVVVPTIREPM--NTVISLFIIASGVPVYYVCVKWK  208 (220)
Q Consensus       146 ~~r~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~  208 (220)
                      ++|+++++     .+||||.|.  +.+.++++.+++++.....+++.  ..+.++++++++.+.|..++|.+
T Consensus       388 ~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (471)
T PRK11387        388 MFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLK  459 (471)
T ss_pred             HHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99887653     247899887  78888888887777654333222  24567777888888787655443

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.96  E-value=4.6e-28  Score=206.51  Aligned_cols=202  Identities=14%  Similarity=0.184  Sum_probs=157.6

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+|++|||+..++.+++++|++...+.....|++++..++.+.....+...|. .+.++.+..+++.+++.++
T Consensus       213 ~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~  292 (445)
T PRK10644        213 AAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGG  292 (445)
T ss_pred             HHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999988765554444555555554 4577888888999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVT-------SDVFALINYMSVALWLSVGACTAGL  144 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~  144 (220)
                      .+...+|++++|+|||.+|++|+|+||+         +++++.++...       +.++.+.+++++..+++|.++..+.
T Consensus       293 ~~~~~sr~~~a~ardg~lP~~~~~v~~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~  372 (445)
T PRK10644        293 WTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAAL  372 (445)
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHhhCcCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977         23333322211       2477899999999999999999999


Q ss_pred             HhhhccCCCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhh
Q psy9205         145 ISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWK  208 (220)
Q Consensus       145 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  208 (220)
                      +++|+|+++.++|+.  .+.++++++.++++++.   .++.....+..+.+.+.++|+..+++|
T Consensus       373 ~~l~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~~  431 (445)
T PRK10644        373 LLLGHGHFGKARPAY--LAVTLIAFVYCIWAVVG---SGAKEVMWSFVTLMVITAFYALNYNRL  431 (445)
T ss_pred             HHHhhcCCcccccch--hHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999988765555532  26788888888888752   334455566666777777776544433

>PRK15049 L-asparagine permease; Provisional

Probab=99.96  E-value=6.4e-28  Score=207.84  Aligned_cols=202  Identities=16%  Similarity=0.129  Sum_probs=152.6

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKI-YKELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+|++|||+..++..++++|++...+....+|.+++..+..+.....+.. .++.+.++.++++++.+++.|+
T Consensus       242 ~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns  321 (499)
T PRK15049        242 AAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNS  321 (499)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999888765444443344433 3445788999999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHH---H---hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLM---L---VTSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      .++++||++|+|||||.+|++|+|+|++         +.+++++.   .   ..+.++.+.++++++.++.|.++.++.+
T Consensus       322 ~~~~~sR~l~a~Ardg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l  401 (499)
T PRK15049        322 GLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQM  401 (499)
T ss_pred             HHHHHHHHHHHHHhcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999976         12222211   1   1245778999999999999999999999


Q ss_pred             hhhccCCC---CCCCcccch--HHHHHHHHHHHHHHHhhcccCc---hHHHHHHHHHHHhhhhhhh
Q psy9205         146 SLRFTQPD---LHRPIKVHL--SLPIIFLACCIFLVVVPTIREP---MNTVISLFIIASGVPVYYV  203 (220)
Q Consensus       146 ~~r~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~  203 (220)
                      ++||+.++   .++|||.|.  +.++++++.++++++......|   +......++.++..+.|+.
T Consensus       402 ~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (499)
T PRK15049        402 RLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGILLVIGWFG  467 (499)
T ss_pred             HHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHH
Confidence            99876433   357899987  6777777766666655444433   2233334444455545544

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.96  E-value=7e-28  Score=207.15  Aligned_cols=214  Identities=14%  Similarity=0.161  Sum_probs=153.1

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhh--hccc-------hhHHHHHHHHhc-cchhHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE--MLTS-------PAVAVTFGGKIY-KELVWIIPILVA   71 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~-g~~~~~~~~~~~   71 (220)
                      .+||+|||+||+|||+..++..++++|++..++.....|.++  +.++       ..+.....+... ++...++.++++
T Consensus       219 ~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~  298 (478)
T TIGR00913       219 TAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVIL  298 (478)
T ss_pred             HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHH
Confidence            589999999999999999999999999998888777777554  2221       122222333332 345678889999


Q ss_pred             HHHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHH
Q psy9205          72 MSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLS  136 (220)
Q Consensus        72 ~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~  136 (220)
                      ++.+++.++.++++||++++|||||.+|++|+|+||+         ..+++.+...      .+.++.+.++++...++.
T Consensus       299 ~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~  378 (478)
T TIGR00913       299 ISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVDRRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFT  378 (478)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999977         2223322211      124677999999999999


Q ss_pred             HHHHHHHHHhhhcc-----CCCCCCCcccch--HHHHHHHHHHHHHHHhhccc-------CchHHHHHHHHHHHhhhhhh
Q psy9205         137 VGACTAGLISLRFT-----QPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIR-------EPMNTVISLFIIASGVPVYY  202 (220)
Q Consensus       137 ~~~~~~~~~~~r~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~  202 (220)
                      |.+.+++.+++|++     +++.+||||.|.  +.++++++.++++++...++       +........+.+..++++|.
T Consensus       379 y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  458 (478)
T TIGR00913       379 WMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGYVAFAPVKFSAKSFFEAYLSLPIFIALYI  458 (478)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999998875     334578999987  66777777666666543321       12233344455555665666


Q ss_pred             hehhhhccchhhh
Q psy9205         203 VCVKWKSKPALLL  215 (220)
Q Consensus       203 ~~~~~~~~~~~~~  215 (220)
                      .++.++|++++.+
T Consensus       459 ~~~~~~~~~~~~~  471 (478)
T TIGR00913       459 GHKVYKRDKLIIK  471 (478)
T ss_pred             HHHHhccccCcCC
Confidence            6555555444443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.96  E-value=1.2e-27  Score=203.74  Aligned_cols=215  Identities=15%  Similarity=0.161  Sum_probs=163.2

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-hhHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS-PAVAVTFGGKIYK-ELVWIIPILVAMSTFGGVN   79 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~   79 (220)
                      .+||+|||+||+|||+..++..+.++|++...+.....|.++.+.+ ........+...+ +...++.++++++.+++.|
T Consensus       203 ~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n  282 (446)
T PRK10197        203 AAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLN  282 (446)
T ss_pred             HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998888887763322 1222223333333 3468888889999999999


Q ss_pred             HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLSVGACTAGL  144 (220)
Q Consensus        80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~  144 (220)
                      +.+++.||++|+|||||.+|++|+|+|++         +..++++...      ...++.+.+..+...++.|.++..+.
T Consensus       283 ~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~  362 (446)
T PRK10197        283 SALYTASRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQ  362 (446)
T ss_pred             HHHHHHHHHHHHHHcCCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999966         2222222211      13577899999999999999999999


Q ss_pred             Hhhhcc--CCCCCCCcccch--HHHHHHHHHHHHHHHhhccc-CchHHHHHHHHHHHhhhhhh-hehhhhccchhhhh
Q psy9205         145 ISLRFT--QPDLHRPIKVHL--SLPIIFLACCIFLVVVPTIR-EPMNTVISLFIIASGVPVYY-VCVKWKSKPALLLE  216 (220)
Q Consensus       145 ~~~r~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~  216 (220)
                      +++||+  +++.++|+|.|.  +.+.++++.+.+++.....+ ++....++.++.+++..+|+ ..+|++|...|++.
T Consensus       363 i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (446)
T PRK10197        363 LRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLVLWQKT  440 (446)
T ss_pred             HHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhcccccCccc
Confidence            999985  334467888875  67777777776666554444 34445567777888888888 77777777776554

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.96  E-value=2.5e-27  Score=203.47  Aligned_cols=203  Identities=18%  Similarity=0.177  Sum_probs=150.1

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHH---HHh-ccchhHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFG---GKI-YKELVWIIPILVAMSTFGG   77 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~g~~~~~~~~~~~~~~~~~   77 (220)
                      .+||+|||+||+|||+..++.+++++|++.+++.....|+++...++++...+.   +.. .++...++.+...++.+++
T Consensus       216 ~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~  295 (474)
T TIGR03813       216 HVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAG  295 (474)
T ss_pred             HHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999988889888654433322222   221 2234567777888899999


Q ss_pred             HHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHH----HHHhh----hcHHHHHHHHHHHHHHHHHHH
Q psy9205          78 VNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSV----LMLVT----SDVFALINYMSVALWLSVGAC  140 (220)
Q Consensus        78 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~~~~  140 (220)
                      .++.+.+.||++++|+|||.+|++|+|+||+         +.+++.    +....    +.++.+.++++...++.|++.
T Consensus       296 ~~~~~~~~sR~~~a~ardg~lP~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~  375 (474)
T TIGR03813       296 VVTWVAGPSSGMLAVAKAGYLPTFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLM  375 (474)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999976         222211    11111    235678899999999999999


Q ss_pred             HHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcccCc---------hHHHHHHHHHHHhhhhhhhe
Q psy9205         141 TAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTIREP---------MNTVISLFIIASGVPVYYVC  204 (220)
Q Consensus       141 ~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~~~  204 (220)
                      .++.+++|+|+|+.+||||.|.      .++.++.+.+++.++..+.++.         +...+..+.+++..+.|+.+
T Consensus       376 ~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ny~~~~~~~~~~~~~~~~~~~  454 (474)
T TIGR03813       376 FASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTGSPTRYVGLLIGLAALFVTAPFLIY  454 (474)
T ss_pred             HHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888899999964      4667777777777766555431         23334444444455455543

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.96  E-value=2e-27  Score=203.97  Aligned_cols=204  Identities=16%  Similarity=0.229  Sum_probs=161.8

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhH-HHHHHHHhccch-hHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAV-AVTFGGKIYKEL-VWIIPILVAMSTFGGVN   79 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~   79 (220)
                      .+||+|| +||+|||+..++.+++++|++.+.+..+..|.+++.+++.+ ...+.+...|.. ..++.++.+++.+++.+
T Consensus       221 ~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~  299 (473)
T TIGR00905       221 SSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLL  299 (473)
T ss_pred             HHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            5799999 99999999999999999999999999999999988765544 555666666654 57888889999999999


Q ss_pred             HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-----hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-----VTSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      +.+.+.||++|+|||||.+|++|+|+|||         ..+++.+..     ..++++.+.++.++..++.|.+++++.+
T Consensus       300 ~~~~~~sR~~~amardg~lP~~~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~  379 (473)
T TIGR00905       300 SWTMLAAEVPFSAAKDGLFPKIFGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLL  379 (473)
T ss_pred             HHHHHHHHHHHHHHhCCChhHHHHhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988         222222111     1357888999999999999999999999


Q ss_pred             hhhccC--CCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccc
Q psy9205         146 SLRFTQ--PDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKP  211 (220)
Q Consensus       146 ~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  211 (220)
                      ++|+++  |+.  +.+.+.++++++.+.+.++..   ..++....++++++++|.++|...+|.++++
T Consensus       380 ~lr~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~  442 (473)
T TIGR00905       380 KLAKVGTYPKI--KNRKALIVGVIACVYSIWLLY---AAGLKYLLLGFILYAPGIIFYGRARKERGKH  442 (473)
T ss_pred             HHHHcCCcccc--ccchHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            998876  332  222233777888877777665   3355567778888999998888766555443

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10746 putative transport protein YifK; Provisional

Probab=99.96  E-value=2.4e-27  Score=202.60  Aligned_cols=209  Identities=13%  Similarity=0.151  Sum_probs=158.6

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVAVTFGGKIYKELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+|++|||+..++..+.++|++..++.....|.+++..++ +....+.+...+..+.++.++++++.+++.|+
T Consensus       222 ~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~  301 (461)
T PRK10746        222 TAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNS  301 (461)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999998888889998877544 44444333333345678888999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh-----hHHHHHH-------HH-h----hhcHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK-----ICLMSVL-------ML-V----TSDVFALINYMSVALWLSVGACTAG  143 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~-----~~~~~~~-------~~-~----~~~~~~l~~~~~~~~~~~~~~~~~~  143 (220)
                      .+++.||++++|||||.+|++|+|+|++     ..+++..       .. .    ...++.+.++++.+.++.|.+..++
T Consensus       302 ~~~~~sR~l~~~a~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~  381 (461)
T PRK10746        302 GMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILIS  381 (461)
T ss_pred             HHHHHHHHHHHHHhCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977     1111111       10 1    1235668899999999999999999


Q ss_pred             HHhhhccCCC--CCCCcccch--HHHHHHHHHHHHHHHhhcccCc--hHHHHHHHHHHHhhhhhhhehhhhcc
Q psy9205         144 LISLRFTQPD--LHRPIKVHL--SLPIIFLACCIFLVVVPTIREP--MNTVISLFIIASGVPVYYVCVKWKSK  210 (220)
Q Consensus       144 ~~~~r~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~  210 (220)
                      .+++||++|+  .++|||.|.  +.+.++++.++.++......+.  .....+..+++++.+.|..+++++|+
T Consensus       382 ~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~  454 (461)
T PRK10746        382 QLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHG  454 (461)
T ss_pred             HHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999998775  357899876  6666666666666544433322  45566777777777788766555543

>PRK10836 lysine transporter; Provisional

Probab=99.95  E-value=2.3e-27  Score=204.26  Aligned_cols=180  Identities=15%  Similarity=0.215  Sum_probs=140.8

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhc---c------chhHHHHHHHHhccchhHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEML---T------SPAVAVTFGGKIYKELVWIIPILVAM   72 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~g~~~~~~~~~~~~   72 (220)
                      .+||+|||+||+|||+..++..+.++|++...+....+|.++..   +      +++....+.+...+..+.++.+++++
T Consensus       227 ~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~  306 (489)
T PRK10836        227 AAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILT  306 (489)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHH
Confidence            58999999999999999999999999999998888888765422   1      12333333333333356788889999


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhh------hcHHHHHHHHHHHHHHHH
Q psy9205          73 STFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVT------SDVFALINYMSVALWLSV  137 (220)
Q Consensus        73 ~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~  137 (220)
                      +.+++.|+.+++.||++++|||||.+|++|+|+|++         +.+++.+....      ..++.+.++++...++.|
T Consensus       307 a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y  386 (489)
T PRK10836        307 AVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAW  386 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999977         22333222221      235668899999999999


Q ss_pred             HHHHHHHHhhhcc----CCCCC-CCcccch--HHHHHHHHHHHHHHHhhcc
Q psy9205         138 GACTAGLISLRFT----QPDLH-RPIKVHL--SLPIIFLACCIFLVVVPTI  181 (220)
Q Consensus       138 ~~~~~~~~~~r~~----~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~  181 (220)
                      .+..++.+++||+    +|+.+ ||||.|.  +.+.++++.+++++.....
T Consensus       387 ~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~  437 (489)
T PRK10836        387 LGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNY  437 (489)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999885    45654 7999988  7888888888888775433

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.95  E-value=3.9e-27  Score=201.90  Aligned_cols=177  Identities=18%  Similarity=0.232  Sum_probs=139.3

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIY-KELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+||+|||+..+.+.+.++|++...+.....|.+++.+++.+.....+... ++...++.+..+++.+++.++
T Consensus       233 ~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~  312 (469)
T PRK11049        233 TAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANS  312 (469)
T ss_pred             HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999988888999999999998888888887665444433334333 345688888999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHH---H-Hhh----hcHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVL---M-LVT----SDVFALINYMSVALWLSVGACTAG  143 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~---~-~~~----~~~~~l~~~~~~~~~~~~~~~~~~  143 (220)
                      .+.+.||++++|||||.+|++|+|+|||         +..++.+   . ...    +.++.+.+++++...+.|.+...+
T Consensus       313 ~~~~~sR~l~a~ardg~lP~~~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a  392 (469)
T PRK11049        313 GVFSTSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCS  392 (469)
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987         1111111   1 111    246668889999999999999999


Q ss_pred             HHhhhccCCCCC--CCcccch--HHHHHHHHHHHHHHHh
Q psy9205         144 LISLRFTQPDLH--RPIKVHL--SLPIIFLACCIFLVVV  178 (220)
Q Consensus       144 ~~~~r~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~  178 (220)
                      ++++|+++|+.+  ||||.|.  ..++++++.+++.+..
T Consensus       393 ~~~lr~~~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~~~  431 (469)
T PRK11049        393 YLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFAFVLVL  431 (469)
T ss_pred             HHHHHHhhhhcCCCCCccCcCcchHHHHHHHHHHHHHHH
Confidence            999999988765  5899886  6666666666655544

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.95  E-value=1.1e-26  Score=200.34  Aligned_cols=182  Identities=17%  Similarity=0.188  Sum_probs=141.3

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHH---HHhc---cchhHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFG---GKIY---KELVWIIPILVAMSTF   75 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~~~~~~   75 (220)
                      .+||+|||+||+|||+..+++++.++|.+..++.....|++++..++++...+.   ....   ++...++.+..+++.+
T Consensus       216 ~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l  295 (507)
T TIGR00910       216 HINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVL  295 (507)
T ss_pred             HHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999998887777788887655443333222   2222   2345677888889999


Q ss_pred             HHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH----h-----hhcHHHHHHHHHHHHHHHH
Q psy9205          76 GGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML----V-----TSDVFALINYMSVALWLSV  137 (220)
Q Consensus        76 ~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~----~-----~~~~~~l~~~~~~~~~~~~  137 (220)
                      ++.++++.++||.++++||||.+|++|+|+|++         +++++.+..    .     ...+..+.++++...++.|
T Consensus       296 ~~~~~~i~~~sR~l~~~ardg~lP~~~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y  375 (507)
T TIGR00910       296 AEIASWIVGPSRGMFAAAQKGLLPAAFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAY  375 (507)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999976         233332211    1     1124456778889999999


Q ss_pred             HHHHHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcccC
Q psy9205         138 GACTAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTIRE  183 (220)
Q Consensus       138 ~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  183 (220)
                      ++..++++++|+|+|+.+||||.|.      .+++++++.+++.++..+.++
T Consensus       376 ~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp  427 (507)
T TIGR00910       376 FLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPP  427 (507)
T ss_pred             HHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCC
Confidence            9999999999999999999999864      567777788887777666553

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.95  E-value=2.8e-26  Score=196.10  Aligned_cols=204  Identities=13%  Similarity=0.093  Sum_probs=152.1

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKI-YKELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+|++|||+..++..+.++|++.........|.+++..++.+.....+.. .++...++.+..+++.+++.++
T Consensus       221 ~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  300 (457)
T PRK10580        221 TAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINS  300 (457)
T ss_pred             HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999899999999888888888888765433333333332 2234577888888999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH------hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML------VTSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      .+++.||++++|||||.+|++|+|+||+         +.++..+..      ..+.++.+.+++++..++.|.+...+.+
T Consensus       301 ~~~~~sR~~~~~ardg~lP~~~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~  380 (457)
T PRK10580        301 DVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQI  380 (457)
T ss_pred             HHHHHHHHHHHHHhCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987         111111111      1234667899999999999999999999


Q ss_pred             hhhccCCC---CCCCcccch--HHHHHHHHHHHHHHHhh-ccc-CchHHHHHHHHHHHhhhhhhheh
Q psy9205         146 SLRFTQPD---LHRPIKVHL--SLPIIFLACCIFLVVVP-TIR-EPMNTVISLFIIASGVPVYYVCV  205 (220)
Q Consensus       146 ~~r~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~g~~~~~~~~  205 (220)
                      ++||++++   .++|||.|.  +.+.++++.+.+++... ..+ .+....++..+++++.+.|..++
T Consensus       381 ~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~  447 (457)
T PRK10580        381 AFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR  447 (457)
T ss_pred             HHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99976432   235788886  67777777777666543 122 23445677777778887777643

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.95  E-value=3.3e-26  Score=195.50  Aligned_cols=202  Identities=15%  Similarity=0.139  Sum_probs=143.5

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc-chhHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT-SPAVAVTFGGKIYK-ELVWIIPILVAMSTFGGVN   79 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~   79 (220)
                      .+||+|||+||+|||+..+....+++|++.........|.++... ++.+.....+...+ ....++.++++++.+++.+
T Consensus       223 ~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~  302 (452)
T TIGR01773       223 AAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLN  302 (452)
T ss_pred             HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999998887777777655332 22133333344333 3467888889999999999


Q ss_pred             HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLSVGACTAGL  144 (220)
Q Consensus        80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~  144 (220)
                      +.++++||++++|||||.+|++|+|+|++         ..+++++...      .+.++.+.+..+...++.|.++.++.
T Consensus       303 ~~~~~~sR~~~a~ardg~lP~~~~~v~~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~  382 (452)
T TIGR01773       303 SALYTTSRMLYSLAERGDAPRVFMKLNKKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQ  382 (452)
T ss_pred             HHHHHHHHHHHHHHhCCCcCHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999966         2222222211      23356688888888899999999999


Q ss_pred             HhhhccCCCCCCCcc--cch--HHHHHHHHHHHHHHHhhc-ccC-chHHHHHHHHHHHhhhhhhh
Q psy9205         145 ISLRFTQPDLHRPIK--VHL--SLPIIFLACCIFLVVVPT-IRE-PMNTVISLFIIASGVPVYYV  203 (220)
Q Consensus       145 ~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~  203 (220)
                      +++|+++|+.+|||+  .+.  +.+.++++.+.+.+.... .++ .+.......+.+...++|..
T Consensus       383 i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~  447 (452)
T TIGR01773       383 LRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLCSYLV  447 (452)
T ss_pred             HHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHH
Confidence            999988776556544  442  555555555554444432 333 34455555556666655554

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10249 phenylalanine transporter; Provisional

Probab=99.95  E-value=3.7e-26  Score=195.28  Aligned_cols=179  Identities=11%  Similarity=0.158  Sum_probs=139.6

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVAVTFGGKIYKELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+|++|||+..++..+.++|++...+.....|++++..++ +....+.+...+..+.++.+..+++.+++.++
T Consensus       231 ~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  310 (458)
T PRK10249        231 TAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNS  310 (458)
T ss_pred             HHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999888888888887765443 44443333333345678888889999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH------hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML------VTSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      .++++||++|+|||||.+|++|+|+|++         +..++.+..      ....++.+.++++...++.|.+...+++
T Consensus       311 ~~~~~sR~l~a~ardg~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l  390 (458)
T PRK10249        311 GVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHL  390 (458)
T ss_pred             HHHHHHHHHHHHhcCCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977         222222211      1135777999999999999999999999


Q ss_pred             hhhc--cCCCCCCCcccch--HHHHHHHHHHHHHHHhhc
Q psy9205         146 SLRF--TQPDLHRPIKVHL--SLPIIFLACCIFLVVVPT  180 (220)
Q Consensus       146 ~~r~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  180 (220)
                      ++||  ++++.++|||.|.  +.++++++.+.++++...
T Consensus       391 ~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~~~~v~~~  429 (458)
T PRK10249        391 RFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMC  429 (458)
T ss_pred             HHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHH
Confidence            9886  4455568999887  667777766666655443

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.95  E-value=6.9e-26  Score=194.23  Aligned_cols=201  Identities=15%  Similarity=0.137  Sum_probs=156.7

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHHHHHHHHhccc-hhHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVAVTFGGKIYKE-LVWIIPILVAMSTFGGVN   79 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~   79 (220)
                      .+||+|| +||+|||+..++..+.++|++.+.+..+..|.+++.+.+ +......+...|. ...++.++++++.+++.+
T Consensus       217 ~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~  295 (468)
T TIGR03810       217 LSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWL  295 (468)
T ss_pred             hHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Confidence            5799998 799999999999999999999999999999988877643 3244455555554 468899999999999999


Q ss_pred             HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-----hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-----VTSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      +++.++||++++|||||.+|++|+|+||+         +..++.+..     ..+.++.+.++++...++.|.+++++.+
T Consensus       296 ~~~~~~sR~~~a~ardg~lP~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~  375 (468)
T TIGR03810       296 SWTLLPAEIPLLMAKDKLMPKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQV  375 (468)
T ss_pred             HHHHHHHHHHHHHHhCCCccHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999977         222222211     1256788999999999999999999999


Q ss_pred             hhhccCC-CCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhh
Q psy9205         146 SLRFTQP-DLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWK  208 (220)
Q Consensus       146 ~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  208 (220)
                      ++|+|++ +..|+++  ..++.++.+.++++++   ........++.++++.|..+|+..+|+|
T Consensus       376 ~l~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~~~~~~  434 (468)
T TIGR03810       376 KLSWRGGQERGRRKQ--LLIGLVALLYAVWLIY---AAGLKYLLLSAILYAPGIYFYARARKEK  434 (468)
T ss_pred             HHHHhcCCccchhhh--HHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9987653 2223332  3667777777777775   3455667788888899998887644444

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.95  E-value=4.9e-26  Score=193.46  Aligned_cols=201  Identities=9%  Similarity=0.101  Sum_probs=146.1

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+||+|||+..++.+++++|++.+.+.....|.+++.+++.+.....+...+. ...++.++++++++++.++
T Consensus       209 ~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~  288 (435)
T PRK10435        209 STGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGS  288 (435)
T ss_pred             HHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999866554444445555554 4678888889999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH------------hhhcHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML------------VTSDVFALINYMSVALWLSVGA  139 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~~~  139 (220)
                      +++..+|..++|||||.+||+|+|+||+         +++++.++.            ..+.++.+.++++...++.|++
T Consensus       289 ~~~~~~r~~~~~ardG~lP~~f~k~nk~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~  368 (435)
T PRK10435        289 WMMLVGQAGVRAANDGNFPKVYGEVDKNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFY  368 (435)
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHhhCcCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977         121111111            1134677999999999999999


Q ss_pred             HHHHHHhhhccCCCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccch
Q psy9205         140 CTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPA  212 (220)
Q Consensus       140 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  212 (220)
                      ++++.+++|+  ++.++++  ..+.+.++.+.+++.+.      .........++.++...|+.|.++|++++
T Consensus       369 ~~~~~ir~~~--~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (435)
T PRK10435        369 SCVDLIRFEG--VNIRNFV--SLICSVLGCVFCFIALM------GASSFELAGTFIVSLIILMFYARKMHERQ  431 (435)
T ss_pred             HHHHHHHhcC--CchhHHH--HHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            9999886543  3332322  11555666666665553      12233333444455555555556655544

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.94  E-value=9.9e-26  Score=192.58  Aligned_cols=180  Identities=12%  Similarity=0.165  Sum_probs=137.6

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+|++|||+..++....+.|+..........|.+++.+++.+.....+...+. ...++.+.++++.+++.++
T Consensus       222 ~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~  301 (456)
T PRK10238        222 TAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNS  301 (456)
T ss_pred             HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999988777777788888765443333333433333 4678888899999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh------hhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV------TSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      .++++||++++|||||.+|++|+|+|++         +.+++.+..+      ...++.+.++++.+.+++|.++.++.+
T Consensus       302 ~~~~~sR~l~a~ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l  381 (456)
T PRK10238        302 CVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHM  381 (456)
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977         2222222221      245778999999999999999999999


Q ss_pred             hhhccCCCC--CCCcccch--HHHHHHHHHHHHHHHhhcc
Q psy9205         146 SLRFTQPDL--HRPIKVHL--SLPIIFLACCIFLVVVPTI  181 (220)
Q Consensus       146 ~~r~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~  181 (220)
                      ++||++++.  +++++.|.  +.+.++++++.+.++....
T Consensus       382 ~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  421 (456)
T PRK10238        382 KFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIMLM  421 (456)
T ss_pred             HHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999876543  34555544  6666666666655544333

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.94  E-value=3.8e-25  Score=190.41  Aligned_cols=207  Identities=17%  Similarity=0.159  Sum_probs=141.7

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhcc-Chhhhccc---hhHHHHHHHHhccc--hhHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVL-TKEEMLTS---PAVAVTFGGKIYKE--LVWIIPILVAMSTF   75 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~g~--~~~~~~~~~~~~~~   75 (220)
                      .+||+|||+||+|||+..++.+..+++++......... +.+++.++   ++..+.+ ....|.  ...++.+.++++.+
T Consensus       239 ~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~g~~~~~~~~~~~~~~~~~  317 (482)
T TIGR00907       239 MAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIF-YNALGNKAGAIFLLCLILVTSF  317 (482)
T ss_pred             HHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHH-HHHhCCchHHHHHHHHHHHHHH
Confidence            58999999999999999999887765554444333333 33433332   2333433 333333  34677888889999


Q ss_pred             HHHHHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHH
Q psy9205          76 GGVNGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLV-----TSDVFALINYMSVALWLSVG  138 (220)
Q Consensus        76 ~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~  138 (220)
                      ++.++.+.+.||++++|||||.+|  ++|+|+|||          +.+++.+...     .++++.+.+++++..++.|.
T Consensus       318 ~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~  397 (482)
T TIGR00907       318 FCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYV  397 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999  999999987          2222222221     24678899999999999999


Q ss_pred             HHHHHHHhhhccCCCCCCCcccch---HHHHHHHHHHHHHHHhhcccC---------chHHHHHHHHHHHhhhhhhhehh
Q psy9205         139 ACTAGLISLRFTQPDLHRPIKVHL---SLPIIFLACCIFLVVVPTIRE---------PMNTVISLFIIASGVPVYYVCVK  206 (220)
Q Consensus       139 ~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~  206 (220)
                      +...+.++.||+ ++.+||||.+.   ++..++++.+.+.++....+.         .+...+..+.++++.++|....|
T Consensus       398 ~~~~~~l~~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~~r  476 (482)
T TIGR00907       398 IPIICKLAKGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGR  476 (482)
T ss_pred             HHHHHHHHhcCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEece
Confidence            988777654443 45678999854   455566666665555433332         24455556667777777766555


Q ss_pred             hhcc
Q psy9205         207 WKSK  210 (220)
Q Consensus       207 ~~~~  210 (220)
                      ++.+
T Consensus       477 ~~~~  480 (482)
T TIGR00907       477 KEFT  480 (482)
T ss_pred             eecc
Confidence            5444

>PRK11021 putative transporter; Provisional

Probab=99.94  E-value=3.4e-25  Score=187.07  Aligned_cols=169  Identities=18%  Similarity=0.250  Sum_probs=131.1

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVN   79 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~   79 (220)
                      +.+||+|||+||+|||+..++..++++|++.+.+.....+.++..+++.+.....++.+|. ...++.+..+++.+++.+
T Consensus       198 ~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~  277 (410)
T PRK11021        198 HLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVN  277 (410)
T ss_pred             hhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence            3589999999999999999999999999999888766665544333222333334444454 346778888899999999


Q ss_pred             HHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-----hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          80 GILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-----VTSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        80 ~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      +.+.+.||++++|||||.+|++|+|+||+         +..++.+..     ...+++.+.+.++...++.|.++.++.+
T Consensus       278 ~~~~~~sR~l~a~ardg~lP~~~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~  357 (410)
T PRK11021        278 IYTQSFARLVWSQAREGRPPSYLARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAAC  357 (410)
T ss_pred             HHHHHHHHHHHHHHccCCccHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999977         222222211     2357888999999999999999999999


Q ss_pred             hhhccCCCCCCCcccchHHHHHHHHHHHHHHHh
Q psy9205         146 SLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVV  178 (220)
Q Consensus       146 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (220)
                      +++++++         ..+++++.+.|.+++..
T Consensus       358 ~l~~~~~---------~~~~~~~~~~~~~~~~~  381 (410)
T PRK11021        358 KLLKGRY---------RPLAVLGCLLCLLLLVM  381 (410)
T ss_pred             HHhccch---------HHHHHHHHHHHHHHHHH
Confidence            8876531         15788888888888753

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.94  E-value=4.6e-25  Score=184.73  Aligned_cols=180  Identities=16%  Similarity=0.243  Sum_probs=145.8

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhh--hc-------cchhHHHHHHHHhccchhHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE--ML-------TSPAVAVTFGGKIYKELVWIIPILVAM   72 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~   72 (220)
                      +|+|++||+|++|||+.-......++|++..+.+...+|+++  +.       ..+|....+.+...+.++.+++.++++
T Consensus       256 aAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~  335 (541)
T COG0833         256 AAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILT  335 (541)
T ss_pred             eecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHH
Confidence            689999999999999999999999999999999999998766  22       123444444445555578999999999


Q ss_pred             HHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhh------hcHHHHHHHHHHHHHHHH
Q psy9205          73 STFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVT------SDVFALINYMSVALWLSV  137 (220)
Q Consensus        73 ~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~  137 (220)
                      +.+++.|+.++++||++|+||+||..||.|+|+|++         +.+++++..+.      ..++++.++++++.++.+
T Consensus       336 svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W  415 (541)
T COG0833         336 SVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAW  415 (541)
T ss_pred             HHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999         22222222221      247789999999999999


Q ss_pred             HHHHHHHHhhhccC---C-C-CCCCcccch--HHHHHHHHHHHHHHHhhcc
Q psy9205         138 GACTAGLISLRFTQ---P-D-LHRPIKVHL--SLPIIFLACCIFLVVVPTI  181 (220)
Q Consensus       138 ~~~~~~~~~~r~~~---~-~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  181 (220)
                      ..++++.+++||..   . + .+-|||.|.  +.++.+++.++.+++...+
T Consensus       416 ~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y  466 (541)
T COG0833         416 GSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGY  466 (541)
T ss_pred             HHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcch
Confidence            99999999999732   1 1 235899888  8899999988888876333

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.93  E-value=1.1e-24  Score=197.98  Aligned_cols=209  Identities=11%  Similarity=0.099  Sum_probs=157.2

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHH----------------------HHH-HHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVA----------------------VTF-GGK   57 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~----------------------~~~-~~~   57 (220)
                      .|||+|||+|++|||++.++.+++++|++.++++....+.+...+.+ ...                      ..+ ...
T Consensus       302 ~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~  381 (953)
T TIGR00930       302 ISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMS  381 (953)
T ss_pred             HHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHh
Confidence            58999999999999999999999999999998777777655432211 110                      001 111


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHhhhcHHHH
Q psy9205          58 IYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLVTSDVFAL  125 (220)
Q Consensus        58 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~~~~~~~l  125 (220)
                      .....+.++.++++++.+++.++++.+++|++++|||||.+|  ++|+|+|+|          +++++.++...++++.+
T Consensus       382 ~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~i  461 (953)
T TIGR00930       382 LVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTI  461 (953)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHH
Confidence            112245789999999999999999999999999999999999  899999976          44556666666789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccC-CCCCCCcccch-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhh
Q psy9205         126 INYMSVALWLSVGACTAGLISLRFTQ-PDLHRPIKVHL-SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYV  203 (220)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  203 (220)
                      ..+.+...+++|++++++++++|.++ |+.++.||... +++.++.+.|+++++..      .+...+..++++..+|++
T Consensus       462 a~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i------~w~~ali~~~i~~~ly~~  535 (953)
T TIGR00930       462 APIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLI------SWWAALVAMVIALFLYKY  535 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988554 44433355433 88999999998888642      233444445556666777


Q ss_pred             ehhhhccchhhhh
Q psy9205         204 CVKWKSKPALLLE  216 (220)
Q Consensus       204 ~~~~~~~~~~~~~  216 (220)
                      +.+++.+.+|++.
T Consensus       536 ~~~~~~~~~wg~~  548 (953)
T TIGR00930       536 VTYKKPDVNWGSS  548 (953)
T ss_pred             hhccCCCCCcchH
Confidence            6777777777753

>KOG1286|consensus

Probab=99.92  E-value=1.1e-23  Score=181.12  Aligned_cols=151  Identities=15%  Similarity=0.245  Sum_probs=125.1

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhh--hccchhHHHHHH-HHhccc---hhHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE--MLTSPAVAVTFG-GKIYKE---LVWIIPILVAMST   74 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~g~---~~~~~~~~~~~~~   74 (220)
                      +.+||+|||+|++|+|+..++..+..+|++....+...+|+++  +.++.+....+. .....+   ...+++++++++.
T Consensus       253 ~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~  332 (554)
T KOG1286|consen  253 TTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGL  332 (554)
T ss_pred             HHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHH
Confidence            4689999999999999999999999999999999999999988  766554333333 222222   3459999999999


Q ss_pred             HHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHH
Q psy9205          75 FGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLVT------SDVFALINYMSVALWLSVGA  139 (220)
Q Consensus        75 ~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~  139 (220)
                      ++++|+.+++++|.+++||+||++||+|+++|++         ..+++.+....      ..++++.++.+++.++.|.+
T Consensus       333 ~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~  412 (554)
T KOG1286|consen  333 LSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTL  412 (554)
T ss_pred             HHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHH
Confidence            9999999999999999999999999999999999         22233333322      23689999999999999999


Q ss_pred             HHHHHHhhhccC
Q psy9205         140 CTAGLISLRFTQ  151 (220)
Q Consensus       140 ~~~~~~~~r~~~  151 (220)
                      ++++++++|+..
T Consensus       413 i~~~~i~~R~a~  424 (554)
T KOG1286|consen  413 VALSHLRFRYAM  424 (554)
T ss_pred             HHHHHeeeeecc
Confidence            999999998853

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.91  E-value=6.2e-23  Score=175.74  Aligned_cols=161  Identities=27%  Similarity=0.376  Sum_probs=132.7

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-h-hHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS-P-AVAVTFGGKIYK-ELVWIIPILVAMSTFGGV   78 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~   78 (220)
                      .+||+|||+|++|||++.+++.++++|++.+.+.....|.+++..+ + .+.........| +...++.+...++.+++.
T Consensus       223 ~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~  302 (466)
T COG0531         223 LAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSL  302 (466)
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999998665543 1 233334444444 567899999999999999


Q ss_pred             HHHHhhhhHHHHHhhccCCCchhhhhhchh----------hHHHHH-HHHhh----hcHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          79 NGILFTSARLFLTGSQEGHLPPLFSYIHIK----------ICLMSV-LMLVT----SDVFALINYMSVALWLSVGACTAG  143 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~----------~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~  143 (220)
                      ++...+.+|.+++|+|||.+|++|+|+|+|          ..+++. .....    ..++.+.++.+...++.|.+...+
T Consensus       303 ~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~  382 (466)
T COG0531         303 LAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALA  382 (466)
T ss_pred             HHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988          333333 22221    246789999999999999999999


Q ss_pred             HHhhhccCCCCCCCcccch
Q psy9205         144 LISLRFTQPDLHRPIKVHL  162 (220)
Q Consensus       144 ~~~~r~~~~~~~~~~~~~~  162 (220)
                      .+++|+++++.+|+++.+.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~  401 (466)
T COG0531         383 LLVLRRKKPDLKRPFRLPL  401 (466)
T ss_pred             HHHHhhcCCCCCCcccccc
Confidence            9999998887778877765

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.91  E-value=3.2e-24  Score=176.40  Aligned_cols=205  Identities=14%  Similarity=0.147  Sum_probs=156.3

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-hHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-AVAVTFGGKIYKELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      .|+|+|||+|++|||+-.......++|+..........|+++..++. |....+.....+..+.++++.++.+.+++.|+
T Consensus       225 tA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NS  304 (462)
T COG1113         225 TAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNS  304 (462)
T ss_pred             HHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccc
Confidence            58999999999999999999999999999999999999999877755 55666655667777899999999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh-----hHHHHHH-------HH---hhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK-----ICLMSVL-------ML---VTSDVFALINYMSVALWLSVGACTAGLI  145 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~-----~~~~~~~-------~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~  145 (220)
                      .+++.+|++|++|+||..||.|+|.|++     ..+++..       +.   ....|+.+.+.++...+..|.++.++.+
T Consensus       305 glystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l  384 (462)
T COG1113         305 GLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQL  384 (462)
T ss_pred             cccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999     1111111       11   1244667889999999999999999999


Q ss_pred             hhhccCCCC--CCCcccch--HHHHHHHHHHHHHHHhhcccCc--hHHHHHHHHHHHhhhhhhhehh
Q psy9205         146 SLRFTQPDL--HRPIKVHL--SLPIIFLACCIFLVVVPTIREP--MNTVISLFIIASGVPVYYVCVK  206 (220)
Q Consensus       146 ~~r~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~  206 (220)
                      ++||++++.  +.+||+|.  +...+.+++.+++++.....+.  .....+..++++-.+.|+..++
T Consensus       385 ~~rk~~~~~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~  451 (462)
T COG1113         385 KLRKAKPAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRK  451 (462)
T ss_pred             HHHhcchhcccCcccccccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhh
Confidence            999965443  34588886  4555555544444433333332  3455566665555555554433

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.91  E-value=1.1e-22  Score=175.59  Aligned_cols=179  Identities=15%  Similarity=0.204  Sum_probs=128.1

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch--h----HHH---HHH-------------HHhc
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP--A----VAV---TFG-------------GKIY   59 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~--~----~~~---~~~-------------~~~~   59 (220)
                      .+||+|||+|++|||+..+...++++|++.........|.++..+++  +    +..   ...             ....
T Consensus       233 ~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~  312 (496)
T PRK15238        233 LVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAASLTL  312 (496)
T ss_pred             HHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhhhhh
Confidence            58999999999999999999999999999888777777766644321  1    000   000             0011


Q ss_pred             cc-hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-h--hh------
Q psy9205          60 KE-LVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-V--TS------  120 (220)
Q Consensus        60 g~-~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-~--~~------  120 (220)
                      +. ...++.+..+++.+++.++..++.+|.+++++|||.+|++|+|+||+         +.+++.+.. .  .+      
T Consensus       313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~  392 (496)
T PRK15238        313 GVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKNGMPANAMWLQCIIVSVFILLVSFGGDAASA  392 (496)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHhCchhHHH
Confidence            11 23466777888999999999999999999999999999999999976         222222221 1  11      


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcc
Q psy9205         121 DVFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTI  181 (220)
Q Consensus       121 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  181 (220)
                      .++.+.++++...++.|.+..++++++|| +|+.+||++.+.      +..+++++.+++.......
T Consensus       393 ~f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (496)
T PRK15238        393 FFNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVFKTKKSTLIATIVVVLVVGFANVFTII  458 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceecCCcceehhHHHHHHHHHHHHHHHhee
Confidence            15679999999999999999999999877 567778776631      4555555555554444433

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.90  E-value=9.2e-22  Score=169.09  Aligned_cols=180  Identities=16%  Similarity=0.182  Sum_probs=123.3

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccCh-hh-hccchhHHHHHHHHhcc-chhHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTK-EE-MLTSPAVAVTFGGKIYK-ELVWIIPILVAMSTFGGV   78 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~   78 (220)
                      .+||+|||+||+|||+..++.+.+++|.+..+......+. ++ ..+++.....+ .+..+ ..+..+.+..+++.+++.
T Consensus       235 ~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~g~~~~~~~~~~~~i~~~~~~  313 (475)
T TIGR03428       235 LSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVL-SAVLDSPWGTVLLVDVAIAILVCT  313 (475)
T ss_pred             HHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHH-HHHhCcHhHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999988777766666554443 11 11222222222 23333 344555566778999999


Q ss_pred             HHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHh-----hhcHHHHHHHHHHHHHHHHHHHH
Q psy9205          79 NGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLV-----TSDVFALINYMSVALWLSVGACT  141 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~  141 (220)
                      ++.+.+.||++|+|||||.+|  ++|+|+|||          ..+++.++..     ...++.+.++++...+++|.+..
T Consensus       314 ~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~  393 (475)
T TIGR03428       314 LAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVT  393 (475)
T ss_pred             HHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999  489999976          2233332222     24577899999999999999987


Q ss_pred             HHHHhhhccC------CCCCCCcccch---HHHHHHHHHHHHHHHhhccc
Q psy9205         142 AGLISLRFTQ------PDLHRPIKVHL---SLPIIFLACCIFLVVVPTIR  182 (220)
Q Consensus       142 ~~~~~~r~~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  182 (220)
                      +..+..|+++      +..++||+++.   .++++++++.++..+....+
T Consensus       394 ~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~P  443 (475)
T TIGR03428       394 VPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNLSWP  443 (475)
T ss_pred             HHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHCC
Confidence            7766554332      12467898885   45555555555444443333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>KOG1289|consensus

Probab=99.90  E-value=5.9e-23  Score=171.86  Aligned_cols=209  Identities=15%  Similarity=0.161  Sum_probs=151.8

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccCh--hhhccch--hHHHHHHHHhccc-hhHHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTK--EEMLTSP--AVAVTFGGKIYKE-LVWIIPILVAMSTF   75 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~   75 (220)
                      +.+||+|||+|+.||||+.++.+.+++.++..+.+....++  +.+.+++  .+...+..+..|. ....+..+.+++.+
T Consensus       273 H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f  352 (550)
T KOG1289|consen  273 HMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALF  352 (550)
T ss_pred             HHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHH
Confidence            35899999999999999999999999999888888777763  2333322  3344444455554 45777888888999


Q ss_pred             HHHHHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHH-----hhhcHHHHHHHHHHHHHHHHH
Q psy9205          76 GGVNGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLML-----VTSDVFALINYMSVALWLSVG  138 (220)
Q Consensus        76 ~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~~  138 (220)
                      -++.+.+.++||+.|+.+|||.+|  ++++++||+          ..+++.++.     ...+++++++.+.++.+++|.
T Consensus       353 ~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~  432 (550)
T KOG1289|consen  353 FMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYA  432 (550)
T ss_pred             HhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999  999999999          222222222     235788999999999999999


Q ss_pred             HHHHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcccCc------hHHHHHHHHHHHhhhhhhhehh
Q psy9205         139 ACTAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTIREP------MNTVISLFIIASGVPVYYVCVK  206 (220)
Q Consensus       139 ~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~  206 (220)
                      ...++.+.++|+ .-.++||+.++      ++.+.+.++++..+.+|...++      ++..+..+.++..+++|+...|
T Consensus       433 iP~~~rlf~~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~  511 (550)
T KOG1289|consen  433 IPIFCRLFFGRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSAR  511 (550)
T ss_pred             HhHHhheeeccc-ccCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecc
Confidence            887776666665 34456766654      5566667777777776665544      3445555666777767766544


Q ss_pred             hhcc
Q psy9205         207 WKSK  210 (220)
Q Consensus       207 ~~~~  210 (220)
                      +..+
T Consensus       512 k~f~  515 (550)
T KOG1289|consen  512 KWFK  515 (550)
T ss_pred             eeec
Confidence            4333

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.89  E-value=1.1e-23  Score=181.19  Aligned_cols=151  Identities=19%  Similarity=0.240  Sum_probs=117.6

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch-----hHHHHHHHHhc-cchhHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP-----AVAVTFGGKIY-KELVWIIPILVAMST   74 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-g~~~~~~~~~~~~~~   74 (220)
                      +.+||+|||||++|||+..+++.++++|++..++.....|.++....+     ++.....+... ++...++.++.+++.
T Consensus       221 ~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~  300 (478)
T PF00324_consen  221 ILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISA  300 (478)
T ss_pred             cccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhh
Confidence            468999999999999999999999999999999999888887754322     23344444433 445789999999999


Q ss_pred             HHHHHHHHhhhhHHHHHhhccCCCchhh-hhhchh---------hHHHHHHHHhh------hcHHHHHHHHHHHHHHHHH
Q psy9205          75 FGGVNGILFTSARLFLTGSQEGHLPPLF-SYIHIK---------ICLMSVLMLVT------SDVFALINYMSVALWLSVG  138 (220)
Q Consensus        75 ~~~~~~~~~~~sR~l~~~a~dg~lP~~f-~~~~~~---------~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~  138 (220)
                      +++.++.+++.||++++|+|||.+|+++ ++.+|+         +.+++++....      ..++.+.+..++..++.|.
T Consensus       301 ~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  380 (478)
T PF00324_consen  301 FSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYI  380 (478)
T ss_pred             hhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHH
Confidence            9999999999999999999999999544 444444         33333332221      2345677888999999999


Q ss_pred             HHHHHHHhhhccC
Q psy9205         139 ACTAGLISLRFTQ  151 (220)
Q Consensus       139 ~~~~~~~~~r~~~  151 (220)
                      +.+++.+++|++.
T Consensus       381 ~~~~s~~~~r~~~  393 (478)
T PF00324_consen  381 LINISYIRFRKKF  393 (478)
T ss_pred             hhhhhhhhhhhhh
Confidence            9999999888763

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.87  E-value=8.7e-21  Score=160.96  Aligned_cols=177  Identities=25%  Similarity=0.429  Sum_probs=140.0

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchh---HHHHHHHHhc-cchhHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPA---VAVTFGGKIY-KELVWIIPILVAMSTFGG   77 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-g~~~~~~~~~~~~~~~~~   77 (220)
                      .+||.||  ||+|||+..+.+.+.++|.+.+++.....|+++...+++   +...+.+... ++...++.++.+++.+++
T Consensus       210 ~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  287 (426)
T PF13520_consen  210 LAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGS  287 (426)
T ss_dssp             GGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred             ccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccc
Confidence            5899776  899999999999999999999999999999988766432   3555555555 445789999999999999


Q ss_pred             HHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHH-h-----hhcHHHHHHHHHHHHHHHHHHHHH
Q psy9205          78 VNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLML-V-----TSDVFALINYMSVALWLSVGACTA  142 (220)
Q Consensus        78 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~~~~~~  142 (220)
                      .++.+.+.+|++++|+|||.+|++|+|+||+         ..+++.+.. .     .++++.+.+..++...+.|.+..+
T Consensus       288 ~~~~~~~~sR~l~~~a~d~~lP~~~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  367 (426)
T PF13520_consen  288 INAFIFGASRLLYAMARDGVLPKWFAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVIL  367 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSGGGGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cchhhcchhhcccccccccchhhhhhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999955         333342222 1     136788999999999999999999


Q ss_pred             HHHhhhccCCCCCC-CcccchHHHHHHHHHHHHHHHhhccc
Q psy9205         143 GLISLRFTQPDLHR-PIKVHLSLPIIFLACCIFLVVVPTIR  182 (220)
Q Consensus       143 ~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (220)
                      +.+++|+|+++.+| +++.  ..++++.+.+++.......+
T Consensus       368 ~~~~~~~~~~~~~r~~~~~--~~~i~~~~~~~~~~~~~~~~  406 (426)
T PF13520_consen  368 AVLFLRRKRPDLKRIPYRP--PVGIIGIIIILFVIIASFFP  406 (426)
T ss_dssp             HHHHTHHHSCSSGH-HHHH--HHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHhhhcCCcCCCCcch--HHHHHHHHHHHHHHHHHHHh
Confidence            99999999888766 4332  45555556666665554443

...

>KOG2082|consensus

Probab=99.74  E-value=3.4e-17  Score=140.59  Aligned_cols=211  Identities=12%  Similarity=0.096  Sum_probs=157.4

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc--chhHHHHHHHHhccc-hhHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT--SPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGV   78 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~   78 (220)
                      -|++.|||+|.+|.+.+.+.+.+..+|+...+.+.+......+.+  ++.+...+......| ..|++.++.++|.+|+.
T Consensus       432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GAg  511 (1075)
T KOG2082|consen  432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAG  511 (1075)
T ss_pred             CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHHH
Confidence            478999999999999999999999999988877766655222211  000110000011122 35899999999999999


Q ss_pred             HHHHhhhhHHHHHhhccCCCc--hhhhhhchh---------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9205          79 NGILFTSARLFLTGSQEGHLP--PLFSYIHIK---------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISL  147 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  147 (220)
                      +.++.+++|+|++.|||+.+|  +.|+|.+++         +.+++-...+.++.+.+..+.+..+++.|.++++++.+.
T Consensus       512 LQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavq  591 (1075)
T KOG2082|consen  512 LQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQ  591 (1075)
T ss_pred             HhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999999999999  999887777         445555566778999999999999999999999887664


Q ss_pred             h-ccCCCCCCCcccch-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccchhhhhhh
Q psy9205         148 R-FTQPDLHRPIKVHL-SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLEMH  218 (220)
Q Consensus       148 r-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  218 (220)
                      . -|.|++++.||... .++.+|..+|+++++.+      .+.++++.+.+..++|-+..++-.+++|+|.++
T Consensus       592 tLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~------SWyyAlvAm~~a~~IYKYiEykGAeKEWGDGiR  658 (1075)
T KOG2082|consen  592 TLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFIS------SWYYALVAMLIAGVIYKYIEYKGAEKEWGDGIR  658 (1075)
T ss_pred             HHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhccccchhccchh
Confidence            3 45577655566544 68899999999988753      334455555666667776667777788887653

>KOG1288|consensus

Probab=99.52  E-value=6.8e-13  Score=113.73  Aligned_cols=171  Identities=13%  Similarity=0.119  Sum_probs=130.6

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGI   81 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (220)
                      .++|.|+|.|.+||+.+.++..+.+.|+++.+.+....|...+.++..+...     .....+++.+++.-+.+.+.+..
T Consensus       316 MSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~-----isl~p~fi~iGi~sttlfss~s~  390 (945)
T KOG1288|consen  316 MSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMH-----ISLHPPFILIGILSTTLFSSMSG  390 (945)
T ss_pred             cCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheee-----ccccchHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998888887666554332221     12245677788888888888999


Q ss_pred             HhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9205          82 LFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRF  149 (220)
Q Consensus        82 ~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~  149 (220)
                      +.++||++.++|||+.+|  -.|+|...+          ++.+.-+.++.++++.+.++.+..++++|..++++++.++.
T Consensus       391 liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~Lei  470 (945)
T KOG1288|consen  391 LIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEI  470 (945)
T ss_pred             HhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999  555665333          44555556677899999999999999999999999999886


Q ss_pred             c-CCCCCCCcccch-HHHHHHHHHHHHHHH
Q psy9205         150 T-QPDLHRPIKVHL-SLPIIFLACCIFLVV  177 (220)
Q Consensus       150 ~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~  177 (220)
                      . .|+.++.||.-- --..+|.+.+..++.
T Consensus       471 ssAPNFRPtFkyF~w~TclvG~l~s~~mMf  500 (945)
T KOG1288|consen  471 SSAPNFRPTFKYFNWHTCLVGVLLSLGMMF  500 (945)
T ss_pred             ccCCCCCchhhhhhHHHHHHHHHHHHhhhh
Confidence            4 355444455432 345556666665553

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=99.17  E-value=2.4e-09  Score=89.06  Aligned_cols=153  Identities=9%  Similarity=0.149  Sum_probs=113.3

Q ss_pred             ccccccccChhHHHHHHH-HHHHHHHHHHHHHHHhccChhhhcc---chhHHHHHHHHhccchh-HHHHHHHHHHHHHHH
Q psy9205           4 EQGFQITLNLPRAIWIAM-PIVTLVYVCANVAYFTVLTKEEMLT---SPAVAVTFGGKIYKELV-WIIPILVAMSTFGGV   78 (220)
Q Consensus         4 ~E~k~p~~~~p~ai~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~   78 (220)
                      .|.|||+|+.|+.+..++ ....+.|+....++.+..+.+++.+   +..+.....+..+|..+ .++.+.++++++++.
T Consensus       206 ~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~  285 (378)
T TIGR00796       206 RGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTA  285 (378)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence            499999999999999999 6666778888888888887665543   45677778888999875 899999999999999


Q ss_pred             HHHHhhhhHHHHHhhccCCCchhhhhhchh----hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCC
Q psy9205          79 NGILFTSARLFLTGSQEGHLPPLFSYIHIK----ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLIS--LRFTQP  152 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~  152 (220)
                      ++...+.++.....-     ||    ++-+    ...+.........++.+.+++.-...+.|=+.....+.  +||+.|
T Consensus       286 iGli~~~a~~f~~~~-----~k----~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~  356 (378)
T TIGR00796       286 VGLTTACSEYFHKLV-----PK----LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWD  356 (378)
T ss_pred             HHHHHHHHHHHHHhc-----CC----CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999777544431     11    1112    22222233344578999999888888888877666555  788778


Q ss_pred             CCCCCcccchHHH
Q psy9205         153 DLHRPIKVHLSLP  165 (220)
Q Consensus       153 ~~~~~~~~~~~~~  165 (220)
                      +.+|+||.+....
T Consensus       357 ~~~~~y~~~~~~~  369 (378)
T TIGR00796       357 SKRAVYQITLIVA  369 (378)
T ss_pred             CCCCeeehHHHHH
Confidence            8789999876433

transmembrane helical spanners.

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.06  E-value=6.2e-09  Score=87.37  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=67.3

Q ss_pred             cccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch------hHHHHHHHHhcc-c-hhHHHHHHHHHHH
Q psy9205           3 KEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP------AVAVTFGGKIYK-E-LVWIIPILVAMST   74 (220)
Q Consensus         3 a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g-~-~~~~~~~~~~~~~   74 (220)
                      .+|.++++|++||++..+..++.++|++...+..+..|.+++.+..      .......+...+ + ...++.+...++.
T Consensus       201 ~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al  280 (381)
T TIGR00837       201 YKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFAL  280 (381)
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            5778777999999999999999999999999999999999876311      111222223222 2 4678888899999


Q ss_pred             HHHHHHHHhhhhHHHH
Q psy9205          75 FGGVNGILFTSARLFL   90 (220)
Q Consensus        75 ~~~~~~~~~~~sR~l~   90 (220)
                      .++.++...+.++.+.
T Consensus       281 ~tS~~g~~l~~~d~l~  296 (381)
T TIGR00837       281 ASSFLGVTLGLFDYLA  296 (381)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998888886554

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>KOG2083|consensus

Probab=98.76  E-value=8.9e-08  Score=81.85  Aligned_cols=210  Identities=10%  Similarity=0.082  Sum_probs=136.0

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccch---------hHHHHHH-HHhccchhHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSP---------AVAVTFG-GKIYKELVWIIPILV   70 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~g~~~~~~~~~~   70 (220)
                      +.+++.|+|++++|++-..+......+|.....-.....-.+.+.+..         ....... -+.....+..+..+.
T Consensus       244 nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi  323 (643)
T KOG2083|consen  244 NISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGI  323 (643)
T ss_pred             cccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHH
Confidence            357889999999999999999999999987655443332222222110         1111111 011222345677788


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhccCCCc--hhhhhhchh----------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q psy9205          71 AMSTFGGVNGILFTSARLFLTGSQEGHLP--PLFSYIHIK----------ICLMSVLMLVTSDVFALINYMSVALWLSVG  138 (220)
Q Consensus        71 ~~~~~~~~~~~~~~~sR~l~~~a~dg~lP--~~f~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  138 (220)
                      ..+.+++..+.+.++.++++++++|+.-|  .+|.|..++          +...+......+..+.+..+.+.....+|.
T Consensus       324 ~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syA  403 (643)
T KOG2083|consen  324 LAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYA  403 (643)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhh
Confidence            88889989999999999999999999999  566655544          222333333446677788888899999999


Q ss_pred             HHHHHHHhhhccCCCCCCC-cccch-HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccchhhhh
Q psy9205         139 ACTAGLISLRFTQPDLHRP-IKVHL-SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPALLLE  216 (220)
Q Consensus       139 ~~~~~~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  216 (220)
                      ....+++..+...++..|| ++... |++.++.+.++..+..      ..++..+.-......+|++..+++..-.|+.+
T Consensus       404 linf~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFl------i~w~aaLi~~~~~~~Ly~yv~~~~pdvnwGsS  477 (643)
T KOG2083|consen  404 LINFSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFL------ISWWAALITFSVLSALYLYVGRRKPDVNWGSS  477 (643)
T ss_pred             ccchhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhcCCCCCcCch
Confidence            9988988777655544443 44443 8888888888877752      12333333333333356655555555455443

>PHA02764 hypothetical protein; Provisional

Probab=97.69  E-value=0.00027  Score=56.80  Aligned_cols=39  Identities=26%  Similarity=0.155  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh
Q psy9205          70 VAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK  108 (220)
Q Consensus        70 ~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~  108 (220)
                      +....++-+....-.+||+.++|+-|+.+|++|+|.||+
T Consensus       244 ~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~n  282 (399)
T PHA02764        244 MPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINPN  282 (399)
T ss_pred             HHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccCCC
Confidence            344455666666678999999999999999999999999

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.34  E-value=0.0079  Score=50.13  Aligned_cols=87  Identities=10%  Similarity=0.031  Sum_probs=62.5

Q ss_pred             cccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHH-Hhccc----hhHHHHHHHHHHHHHH
Q psy9205           3 KEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGG-KIYKE----LVWIIPILVAMSTFGG   77 (220)
Q Consensus         3 a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~----~~~~~~~~~~~~~~~~   77 (220)
                      .+|.|||| +.||++..+...++++|.+...+..+..|+++..+...|.....+ ...+.    ...++...-+.+.+..
T Consensus       202 ~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~  280 (359)
T TIGR00912       202 FPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVK  280 (359)
T ss_pred             HHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            57888865 689999999999999999999999999999998776544444444 22332    2234444455666777


Q ss_pred             HHHHHhhhhHHHH
Q psy9205          78 VNGILFTSARLFL   90 (220)
Q Consensus        78 ~~~~~~~~sR~l~   90 (220)
                      ....++..++.+.
T Consensus       281 ~~~~~~~~~~~~~  293 (359)
T TIGR00912       281 IAFYLYIAVKGLS  293 (359)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777643

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PF13906 AA_permease_C: C-terminus of AA_permease

Probab=97.16  E-value=0.0013  Score=38.37  Aligned_cols=49  Identities=22%  Similarity=0.266  Sum_probs=38.9

Q ss_pred             cccch--HHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhc
Q psy9205         158 IKVHL--SLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKS  209 (220)
Q Consensus       158 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  209 (220)
                      ||.|.  ++|.+++..+++++.   .-+..+.....+|+++|.++|+.|.++|+
T Consensus         1 F~vP~vP~~P~~si~~ni~Lm~---~L~~~twirf~iWl~iGl~iYf~YG~~hS   51 (51)
T PF13906_consen    1 FKVPLVPFLPALSILINIYLMA---QLSALTWIRFGIWLAIGLVIYFGYGIRHS   51 (51)
T ss_pred             CCCCcccHHHHHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence            46666  899999999999996   23445666777889999999999887763

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.00  E-value=0.088  Score=44.61  Aligned_cols=149  Identities=12%  Similarity=0.112  Sum_probs=80.8

Q ss_pred             ccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----c---hhHHHHHHHHhccc-hhHHHHHHHHHHHHHH
Q psy9205           6 GFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----S---PAVAVTFGGKIYKE-LVWIIPILVAMSTFGG   77 (220)
Q Consensus         6 ~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~   77 (220)
                      .++-+|++.|++..+..+..++|++-..+..+.+|.++..+    +   ++......+...++ ...+..+...++..++
T Consensus       210 ~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TS  289 (394)
T PF03222_consen  210 LGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATS  289 (394)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            34446788999999999999999998888888888876533    1   12222222222223 3455666666666666


Q ss_pred             HHHHHhhhhHHHHHhhccCCCchhhhhhchh--hHHHHHHHH------hhhcHHHHHHHHHHHHHHHHHHHH-HHHHhhh
Q psy9205          78 VNGILFTSARLFLTGSQEGHLPPLFSYIHIK--ICLMSVLML------VTSDVFALINYMSVALWLSVGACT-AGLISLR  148 (220)
Q Consensus        78 ~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~--~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~r  148 (220)
                      ..+...+....+...=+.   +   .+.++|  ...++.+..      ..+.+....+.++....+-+.+.+ ....+.|
T Consensus       290 FlGv~lgl~d~l~d~~k~---~---~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r  363 (394)
T PF03222_consen  290 FLGVYLGLFDFLADLFKL---K---NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKAR  363 (394)
T ss_pred             HHHHHHHHHHHHHHHHcC---C---ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Confidence            666666655544322111   0   111122  222222211      123455566666655544444444 3344555


Q ss_pred             ccCCCCCCCcccch
Q psy9205         149 FTQPDLHRPIKVHL  162 (220)
Q Consensus       149 ~~~~~~~~~~~~~~  162 (220)
                      +++++  ++|+.+.
T Consensus       364 ~~~~~--~~~~~~g  375 (394)
T PF03222_consen  364 KRKPK--QPYRVPG  375 (394)
T ss_pred             cccCC--CCeEEeC
Confidence            54433  4577765

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=96.53  E-value=0.22  Score=42.56  Aligned_cols=121  Identities=12%  Similarity=0.119  Sum_probs=70.5

Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHHHHHhccCh-hhhccchhHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhhH
Q psy9205          10 TLNLPRAIWIAMPIVTLVYVCANVAYFTVLTK-EEMLTSPAVAVTFGGKIYKELV-WIIPILVAMSTFGGVNGILFTSAR   87 (220)
Q Consensus        10 ~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~sR   87 (220)
                      .|..-++-.++.....++|....+.-....+. ++..+.........++.+|..+ .++.+.+.++|+++..+...+++.
T Consensus       221 ~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~  300 (427)
T PF05525_consen  221 KKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAE  300 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555566666655433222221 2223334566667788899876 888999999999999999999998


Q ss_pred             HHHHhhccCCCchhhhhhchh--hHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHH
Q psy9205          88 LFLTGSQEGHLPPLFSYIHIK--ICLMSVLMLVT--SDVFALINYMSVALWLSVGA  139 (220)
Q Consensus        88 ~l~~~a~dg~lP~~f~~~~~~--~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~  139 (220)
                      ...+...         |++-|  ..+.++.....  -.++.+++++.=...+.|=.
T Consensus       301 yf~~~~~---------kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~PiL~~iYP~  347 (427)
T PF05525_consen  301 YFSELFP---------KISYKVWVIIFTIFSFIIANLGLDQIIKISVPILMFIYPV  347 (427)
T ss_pred             HHHHHhc---------ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhHH
Confidence            7665442         12222  22222222221  24677777666555555543

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>PRK10483 tryptophan permease; Provisional

Probab=96.26  E-value=0.63  Score=39.71  Aligned_cols=84  Identities=7%  Similarity=0.120  Sum_probs=52.9

Q ss_pred             ccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----chhH---HHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Q psy9205           8 QITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----SPAV---AVTFGGKIYK-ELVWIIPILVAMSTFGGVN   79 (220)
Q Consensus         8 ~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~   79 (220)
                      |+ |.+.|++..+..+..++|++-..+..+.+|++++.+    ++..   ...+.+.... ....+..+...++..++-.
T Consensus       221 d~-~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl  299 (414)
T PRK10483        221 DP-KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL  299 (414)
T ss_pred             CH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            44 488999999999999999999999999999877532    2222   1222222222 2345555665666666666


Q ss_pred             HHHhhhhHHHHHh
Q psy9205          80 GILFTSARLFLTG   92 (220)
Q Consensus        80 ~~~~~~sR~l~~~   92 (220)
                      +...+...-+..+
T Consensus       300 Gv~LGL~d~l~D~  312 (414)
T PRK10483        300 GVTLGLFDYLADL  312 (414)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555544443

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=96.13  E-value=0.73  Score=39.22  Aligned_cols=87  Identities=7%  Similarity=0.044  Sum_probs=57.9

Q ss_pred             cccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----ch---hHHHHHHHHhc-cchhHHHHHHHHHHHHHHH
Q psy9205           7 FQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----SP---AVAVTFGGKIY-KELVWIIPILVAMSTFGGV   78 (220)
Q Consensus         7 k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~   78 (220)
                      ++-+|.+.|++..+..+..+.|++-..+..+..|.+++.+    ..   +..+.+.+... ++...+..+...++..++-
T Consensus       208 ~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSF  287 (403)
T PRK15132        208 GGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSF  287 (403)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence            4445788999999999999999999999999999887532    11   23333333222 2334566666666666666


Q ss_pred             HHHHhhhhHHHHHhh
Q psy9205          79 NGILFTSARLFLTGS   93 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a   93 (220)
                      .+...+...-+..+-
T Consensus       288 lGv~lgl~d~l~d~~  302 (403)
T PRK15132        288 LGVALGLFDYLADLF  302 (403)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666655544

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=96.01  E-value=0.3  Score=39.93  Aligned_cols=83  Identities=7%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNGI   81 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   81 (220)
                      .++|+++ +|+.-+|-..+-++.+.+..+.+.......|  +..+.+-|...+.++..+..+.++.+...+...++..+.
T Consensus       201 lg~~~~~-~~~~~~g~l~gglIlgvl~~l~nlsLi~~~~--~v~~~dIP~l~i~~~~~~~i~lvm~vIi~~~IytT~vg~  277 (349)
T COG3949         201 LGGRMES-RKVSGIGGLIGGLILGVLLFLINLSLIALYD--KVVNYDIPLLTIAKNFSPLIGLVMSVIIWLEIYTTTVGL  277 (349)
T ss_pred             hcccccc-cchhhhhhhhhhHHHHHHHHHHHHHHHhhcc--hhhccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688888 5677788888888888877777777766544  555655444445554444456777777777888888887


Q ss_pred             HhhhhH
Q psy9205          82 LFTSAR   87 (220)
Q Consensus        82 ~~~~sR   87 (220)
                      +++-++
T Consensus       278 iy~l~~  283 (349)
T COG3949         278 IYGLAS  283 (349)
T ss_pred             HHHHHH
Confidence            777444

>PRK09664 tryptophan permease TnaB; Provisional

Probab=95.89  E-value=0.66  Score=39.58  Aligned_cols=81  Identities=9%  Similarity=0.133  Sum_probs=48.6

Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----chhHH---HHHHHHhcc-chhHHHHHHHHHHHHHHHHHH
Q psy9205          10 TLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----SPAVA---VTFGGKIYK-ELVWIIPILVAMSTFGGVNGI   81 (220)
Q Consensus        10 ~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~   81 (220)
                      .|...|++..+..+..++|++-..+..+.+|++++.+    +++..   ....+...+ +...+..+...++..++-.+.
T Consensus       223 ~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv  302 (415)
T PRK09664        223 KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGV  302 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999989888777532    11222   222222222 234455555555555555554


Q ss_pred             HhhhhHHHH
Q psy9205          82 LFTSARLFL   90 (220)
Q Consensus        82 ~~~~sR~l~   90 (220)
                      ..+...-+.
T Consensus       303 ~LGL~D~l~  311 (415)
T PRK09664        303 TLGLFDYLA  311 (415)
T ss_pred             HHHHHHHHH
Confidence            444444333

>KOG1304|consensus

Probab=95.32  E-value=0.56  Score=40.19  Aligned_cols=39  Identities=18%  Similarity=0.282  Sum_probs=29.9

Q ss_pred             ccccccccChh---HHHHHHHHHHHHHHHHHHHHHHhccChhh
Q psy9205           4 EQGFQITLNLP---RAIWIAMPIVTLVYVCANVAYFTVLTKEE   43 (220)
Q Consensus         4 ~E~k~p~~~~p---~ai~~~~~~~~~~y~~~~~~~~~~~~~~~   43 (220)
                      +|+|+|+ ++|   ..+-.++.++.++|......-+...+++.
T Consensus       265 n~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v  306 (449)
T KOG1304|consen  265 NSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDV  306 (449)
T ss_pred             hcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            5789988 456   88889999999999987776666555443

>PRK11375 allantoin permease; Provisional

Probab=95.31  E-value=1.3  Score=38.69  Aligned_cols=32  Identities=13%  Similarity=0.242  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHH-HHHhhhhHHHHHhhccCCCchhhh
Q psy9205          67 PILVAMSTFGGVN-GILFTSARLFLTGSQEGHLPPLFS  103 (220)
Q Consensus        67 ~~~~~~~~~~~~~-~~~~~~sR~l~~~a~dg~lP~~f~  103 (220)
                      .+..+++..++.. ...++++-     .-.+.+||+..
T Consensus       314 ~l~~v~a~~~tN~~~N~ys~~~-----~l~~l~pk~i~  346 (484)
T PRK11375        314 VLVILMTTISTNATGNIIPAGY-----QIAALAPTKLT  346 (484)
T ss_pred             HHHHHHHHHHHHHHhhcccHHH-----HHHHhCcCccc
Confidence            3444555555533 34554443     33566776543

>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members

Probab=95.06  E-value=1.6  Score=38.38  Aligned_cols=97  Identities=20%  Similarity=0.150  Sum_probs=53.9

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCch-hhhhhchh------------hHHHHHHH--H
Q psy9205          53 TFGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPP-LFSYIHIK------------ICLMSVLM--L  117 (220)
Q Consensus        53 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~f~~~~~~------------~~~~~~~~--~  117 (220)
                      .+......+..+.+.+.+.++..-+-.+.+.++=-+..+.-+-|.+|+ ...+++++            ...++++.  .
T Consensus       265 pFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl  344 (534)
T PF02705_consen  265 PFFLLIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVL  344 (534)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhhe
Confidence            344433334444444444444444444555555566667778899994 23344444            12222222  2


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Q psy9205         118 VTSDVFALINYMSVALWLSVGACTAGL-ISLRF  149 (220)
Q Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~r~  149 (220)
                      .+.+-+.+.+.-+++......++.+-. ++.++
T Consensus       345 ~F~~S~~la~AYGiAVt~tM~iTT~L~~~v~~~  377 (534)
T PF02705_consen  345 GFRSSSNLAAAYGIAVTGTMLITTILLFLVMRR  377 (534)
T ss_pred             EECChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777888888888888877775543 33443

; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=94.94  E-value=2.1  Score=36.89  Aligned_cols=85  Identities=12%  Similarity=0.076  Sum_probs=53.1

Q ss_pred             cccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhcc----chhHHHHHHHHhcc----------chhHHHHHHHHHHH
Q psy9205           9 ITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLT----SPAVAVTFGGKIYK----------ELVWIIPILVAMST   74 (220)
Q Consensus         9 p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g----------~~~~~~~~~~~~~~   74 (220)
                      .+|...|++..+..+..++|++-.+++.+..|+|++.+    +.+....+.+...+          ....+..+...++.
T Consensus       248 a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI  327 (443)
T PRK13629        248 TERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAI  327 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999988653    22323333332222          23344444444444


Q ss_pred             HHHHHHHHhhhhHHHHHhh
Q psy9205          75 FGGVNGILFTSARLFLTGS   93 (220)
Q Consensus        75 ~~~~~~~~~~~sR~l~~~a   93 (220)
                      .++-.+...+.---+..+.
T Consensus       328 ~TSFlGv~LGl~E~l~gl~  346 (443)
T PRK13629        328 FKSFFGHYLGTLEGLNGLI  346 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=94.39  E-value=2.9  Score=35.77  Aligned_cols=40  Identities=15%  Similarity=0.143  Sum_probs=34.8

Q ss_pred             cccccccccC-hhHHHHHHHHHHHHHHHHHHHHHHhccChh
Q psy9205           3 KEQGFQITLN-LPRAIWIAMPIVTLVYVCANVAYFTVLTKE   42 (220)
Q Consensus         3 a~E~k~p~~~-~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~   42 (220)
                      .+|.|+++++ ++|++..+..+..++|+......+...+.+
T Consensus       216 ~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~  256 (415)
T COG0814         216 VNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL  256 (415)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            4678877776 999999999999999999999888888765

>KOG1303|consensus

Probab=93.94  E-value=1.1  Score=38.50  Aligned_cols=38  Identities=16%  Similarity=0.157  Sum_probs=32.4

Q ss_pred             cccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhh
Q psy9205           5 QGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE   43 (220)
Q Consensus         5 E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~   43 (220)
                      .+|+|++ ++|+...+..+++.+|+..++.-+.+.+++.
T Consensus       253 tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~  290 (437)
T KOG1303|consen  253 TMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGDSV  290 (437)
T ss_pred             hcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence            4688888 9999999999999999999888877776443

>TIGR00814 stp serine transporter

Probab=93.82  E-value=2.3  Score=36.18  Aligned_cols=90  Identities=10%  Similarity=0.001  Sum_probs=52.6

Q ss_pred             cccccc---ccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccc----hhHHHHHHHHhccc-hhHHHHHHHHHHHH
Q psy9205           4 EQGFQI---TLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS----PAVAVTFGGKIYKE-LVWIIPILVAMSTF   75 (220)
Q Consensus         4 ~E~k~p---~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~-~~~~~~~~~~~~~~   75 (220)
                      ||-+||   +|..-|++..+..+..++|++..+++.+..+++++.+.    .+....+.+....+ ...+..+...++..
T Consensus       214 ~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~  293 (397)
T TIGR00814       214 EEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAIS  293 (397)
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence            444544   57778999999999999999999999999998886431    12233333322222 33444444444444


Q ss_pred             HHHHHHHhhhhHHHHHhh
Q psy9205          76 GGVNGILFTSARLFLTGS   93 (220)
Q Consensus        76 ~~~~~~~~~~sR~l~~~a   93 (220)
                      ++-.+...+...-+..+-
T Consensus       294 tSFlG~~lg~~e~l~~l~  311 (397)
T TIGR00814       294 KSFFGHYLGAREGLNGIV  311 (397)
T ss_pred             HHHHHHHHhHHHHHHHHH
Confidence            444444444444443333

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=93.04  E-value=5.4  Score=34.38  Aligned_cols=81  Identities=12%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhccC-hhhhccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy9205          13 LPRAIWIAMPIVTLVYVCANVAYFTVLT-KEEMLTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGVNGILFTSARLFL   90 (220)
Q Consensus        13 ~p~ai~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~sR~l~   90 (220)
                      .-++-.++.....++|....+.-....+ .++..+.........++.+|.. ..++.+.+.++++++..+...+.++-..
T Consensus       228 t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~  307 (439)
T PRK15433        228 TVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFA  307 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555666655443322222 1122133344445556667776 5888999999999999999999998766


Q ss_pred             Hhh
Q psy9205          91 TGS   93 (220)
Q Consensus        91 ~~a   93 (220)
                      +.-
T Consensus       308 ~~~  310 (439)
T PRK15433        308 QYV  310 (439)
T ss_pred             hhc
Confidence            553

>PLN03074 auxin influx permease; Provisional

Probab=92.56  E-value=6.6  Score=34.25  Aligned_cols=38  Identities=11%  Similarity=0.035  Sum_probs=29.0

Q ss_pred             ccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChh
Q psy9205           4 EQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKE   42 (220)
Q Consensus         4 ~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~   42 (220)
                      .|+|||+ ++++....+......+|+..++..+...+++
T Consensus       257 ~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~  294 (473)
T PLN03074        257 HAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE  294 (473)
T ss_pred             HhccChh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence            5899996 5888888888888888888776666666654

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=92.02  E-value=0.08  Score=44.71  Aligned_cols=145  Identities=12%  Similarity=0.128  Sum_probs=76.9

Q ss_pred             ccccccccc--ChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q psy9205           3 KEQGFQITL--NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         3 a~E~k~p~~--~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   80 (220)
                      -+|+|+|+|  ++.|+...+...+.++|.+....-+...+++. .+  .....+.+.  ++...+..+...+..+.+.--
T Consensus       215 ~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-~~--~il~n~~~~--~~~~~i~~~~~~i~~~~s~pl  289 (409)
T PF01490_consen  215 QSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSV-QG--NILLNLPND--DVLIIIARILLVISLLLSYPL  289 (409)
T ss_pred             eeeccCCccccccceeeeehhhhhhHHhhhhhhcccceeeeee-cc--hhhhcCCCc--ccccccccccchhhhhhcccc
Confidence            478999885  46699999999999999998876666555322 11  111111100  012334444444444444444


Q ss_pred             HHhhhhHHHHHhhccC-----CCchhhhh-hchh------hHHHHHHH-HhhhcHHHHHHHHHHH--HHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEG-----HLPPLFSY-IHIK------ICLMSVLM-LVTSDVFALINYMSVA--LWLSVGACTAGLI  145 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg-----~lP~~f~~-~~~~------~~~~~~~~-~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~  145 (220)
                      ......+.+...-++.     .-++.-.+ ...+      ..+++... ...+++..+.++.+..  ..+.|.+....++
T Consensus       290 ~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~  369 (409)
T PF01490_consen  290 QLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYL  369 (409)
T ss_pred             ccchhHhhhhhheeccccccccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHH
Confidence            4555555555554432     11111111 1111      12222222 2346777777666433  3688888888888


Q ss_pred             hhhccCC
Q psy9205         146 SLRFTQP  152 (220)
Q Consensus       146 ~~r~~~~  152 (220)
                      +.++++.
T Consensus       370 ~~~~~~~  376 (409)
T PF01490_consen  370 KLFKRKR  376 (409)
T ss_pred             Hhhcccc
Confidence            8777654

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2

Probab=91.75  E-value=3.8  Score=34.23  Aligned_cols=42  Identities=7%  Similarity=-0.065  Sum_probs=33.1

Q ss_pred             HHHHhcc-ch-hHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcc
Q psy9205          54 FGGKIYK-EL-VWIIPILVAMSTFGGVNGILFTSARLFLTGSQE   95 (220)
Q Consensus        54 ~~~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d   95 (220)
                      ..+...| .. ..++.++.+.+.+++..+...+.++.+.+.-+-
T Consensus       244 ~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~  287 (358)
T PF01566_consen  244 ALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGW  287 (358)
T ss_pred             HHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcC
Confidence            3345566 34 689999999999999999999999988877643

The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane

>PTZ00206 amino acid transporter; Provisional

Probab=90.97  E-value=3.4  Score=35.96  Aligned_cols=39  Identities=15%  Similarity=0.037  Sum_probs=31.2

Q ss_pred             ccccccc-cChhHHHHHHHHHHHHHHHHHHHHHHhccChh
Q psy9205           4 EQGFQIT-LNLPRAIWIAMPIVTLVYVCANVAYFTVLTKE   42 (220)
Q Consensus         4 ~E~k~p~-~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~   42 (220)
                      +|+|||. |+..+....+..++.++|......-+...+++
T Consensus       280 ~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~  319 (467)
T PTZ00206        280 MDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRN  319 (467)
T ss_pred             HhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence            5788865 67889999999999999999888776666643

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]

Probab=90.41  E-value=11  Score=33.02  Aligned_cols=28  Identities=7%  Similarity=0.020  Sum_probs=13.7

Q ss_pred             cccccccChhHHHHHHHHHHHHHHHHHHH
Q psy9205           5 QGFQITLNLPRAIWIAMPIVTLVYVCANV   33 (220)
Q Consensus         5 E~k~p~~~~p~ai~~~~~~~~~~y~~~~~   33 (220)
                      +.|+| |+.-++..+++.+...++.+..+
T Consensus       266 fa~s~-~~~~~gq~~gLPv~~~l~~ligv  293 (497)
T COG1953         266 FAKSQ-KAQIWGQLVGLPVNFALFSLIGV  293 (497)
T ss_pred             ccCCh-hhhhhccchhhhHHHHHHHHHHh
Confidence            44443 34445555555555555554443

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=89.99  E-value=12  Score=32.28  Aligned_cols=95  Identities=6%  Similarity=-0.068  Sum_probs=58.1

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhh--ccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEM--LTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGV   78 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~   78 (220)
                      ++.+++||.|.=-..+....+=+.++.....+.....-.++.-  .++..+.+...++.+|.+ ..++.+..++=.+++.
T Consensus       288 AaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTI  367 (452)
T COG1115         288 AAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTI  367 (452)
T ss_pred             HhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            3567888888655444443333444444433333222222221  244456666667777765 5888888888899999


Q ss_pred             HHHHhhhhHHHHHhhccC
Q psy9205          79 NGILFTSARLFLTGSQEG   96 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a~dg   96 (220)
                      +++.+..=|-+.=+.+++
T Consensus       368 lg~yyyge~~~~fl~~~k  385 (452)
T COG1115         368 LGWYYYGEKNIEFLFGSK  385 (452)
T ss_pred             HHHHHHHHHHHHHHhCCc
Confidence            999888877776666444

>TIGR00794 kup potassium uptake protein

Probab=89.70  E-value=6.4  Score=35.84  Aligned_cols=84  Identities=12%  Similarity=0.092  Sum_probs=46.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCch-hhhhhchh------------hHHHHHHHH--hhhcHHH
Q psy9205          60 KELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPP-LFSYIHIK------------ICLMSVLML--VTSDVFA  124 (220)
Q Consensus        60 g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~f~~~~~~------------~~~~~~~~~--~~~~~~~  124 (220)
                      ++..+.+.+.+.++..-+-.+.+.++=-+..+.-+-|.+|+ ...+++++            ...++++..  .+.+-+.
T Consensus       309 ~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~  388 (688)
T TIGR00794       309 DWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNN  388 (688)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHH
Confidence            34444444444444444444445555555566677899993 23444444            122222222  3466777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy9205         125 LINYMSVALWLSVGACTAG  143 (220)
Q Consensus       125 l~~~~~~~~~~~~~~~~~~  143 (220)
                      +.+..+++......++.+-
T Consensus       389 la~AYGiaVt~tM~iTT~L  407 (688)
T TIGR00794       389 LGAAYGIAVTGTFLVTTCL  407 (688)
T ss_pred             HHHHhhhhhhhhhHHHHHH
Confidence            8888888777777766443

Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.

>KOG1305|consensus

Probab=89.25  E-value=13  Score=31.81  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=31.4

Q ss_pred             ccccccc-cChhHHHHHHHHHHHHHHHHHHHHHHhccChhh
Q psy9205           4 EQGFQIT-LNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEE   43 (220)
Q Consensus         4 ~E~k~p~-~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~   43 (220)
                      .|.|||+ |++-+....+...+.++|......-+...+++.
T Consensus       218 ~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v  258 (411)
T KOG1305|consen  218 NELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLV  258 (411)
T ss_pred             eeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccc
Confidence            6888887 588888889999999999988776666665443

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=88.66  E-value=16  Score=31.93  Aligned_cols=79  Identities=16%  Similarity=0.120  Sum_probs=37.2

Q ss_pred             ccccccChhHHHHHHHHHHHHHHHHHHHHH---HhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHH
Q psy9205           6 GFQITLNLPRAIWIAMPIVTLVYVCANVAY---FTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNGI   81 (220)
Q Consensus         6 ~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~   81 (220)
                      .|| +|+..|+..++......+++.....-   ....|+.+ ..+....... .+..|. ..-++..+++.+..++..+.
T Consensus       263 aks-~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~-~~~~~~p~l~-~~~lp~~l~gl~~a~~~aA~mST~~s~  339 (483)
T PRK09442        263 YKD-SKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLT-VPDKVIPTLM-LKVLPPFAAGIFLAAPMAAIMSTVDSQ  339 (483)
T ss_pred             cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CccchHHHHH-HHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344 34666777777665555544332211   11123211 1122233333 333443 45555666666666666666


Q ss_pred             HhhhhH
Q psy9205          82 LFTSAR   87 (220)
Q Consensus        82 ~~~~sR   87 (220)
                      +.+.+=
T Consensus       340 l~~~ss  345 (483)
T PRK09442        340 LLQSSS  345 (483)
T ss_pred             HHHHHH
Confidence            655544

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=88.62  E-value=6.3  Score=33.72  Aligned_cols=92  Identities=7%  Similarity=-0.026  Sum_probs=55.1

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccC--hhhhccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLT--KEEMLTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGV   78 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~   78 (220)
                      ++.|+++|.|.=-.++.-..+=+.++..+..++....-.  .++-.++..+.+...+...|.+ ..++.+..++-.++++
T Consensus       244 a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTi  323 (416)
T PF01235_consen  244 AAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTI  323 (416)
T ss_pred             HHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            356888998876655555444444444444443322211  1111122344455555666655 5788888888889999


Q ss_pred             HHHHhhhhHHHHHhh
Q psy9205          79 NGILFTSARLFLTGS   93 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a   93 (220)
                      .++.+..-+.+.-+.
T Consensus       324 lg~~~yge~~~~yl~  338 (416)
T PF01235_consen  324 LGWYYYGEKCAEYLF  338 (416)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            998888877766555

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>TIGR00835 agcS amino acid carrier protein

Probab=86.79  E-value=19  Score=30.93  Aligned_cols=143  Identities=8%  Similarity=-0.029  Sum_probs=72.3

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChh--hhccchhHHHHHHHHhccch-hHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKE--EMLTSPAVAVTFGGKIYKEL-VWIIPILVAMSTFGGV   78 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~   78 (220)
                      ++.|++||.|.=-.++.-..+=+.++.....+.....-.++  +-.++..+.+...+..+|.+ ..++.+..++-.+++.
T Consensus       271 a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTi  350 (425)
T TIGR00835       271 AAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTI  350 (425)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            35678899986655555444433333333333222211111  11122344444555555644 5888888888889999


Q ss_pred             HHHHhhhhHHHHHhhccCCCchhhhhhchhhHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy9205          79 NGILFTSARLFLTGSQEGHLPPLFSYIHIKICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRF  149 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~  149 (220)
                      .++.+..-+.+.-+-+++..     +.-+-..++.+......+.+.+.+++.+..-+.-....++.+.+++
T Consensus       351 i~~~yyge~~~~yl~~~~~~-----~~~r~~~~~~~~~g~~~~~~~vw~~~D~~~~lm~i~Nlial~~L~~  416 (425)
T TIGR00835       351 IGWYYYGEKNAEFLKGNKKV-----KLYRLVFLAAVFVGAFLSLDLVWNLADLSMGLMAIPNLIAILLLRK  416 (425)
T ss_pred             HHHHHHHHHHHHHhcCCCcc-----ceeeehhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888887776666433310     0000022222222233344545555544444444444455555544

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PRK00701 manganese transport protein MntH; Reviewed

Probab=86.17  E-value=21  Score=30.82  Aligned_cols=29  Identities=7%  Similarity=-0.032  Sum_probs=16.5

Q ss_pred             HHhccch-hHHHHHHHHHHHHHHHHHHHhh
Q psy9205          56 GKIYKEL-VWIIPILVAMSTFGGVNGILFT   84 (220)
Q Consensus        56 ~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~   84 (220)
                      +..+|.. ..++.++.+.+.+++..+...+
T Consensus       301 ~p~~G~~a~~lFaiGL~aag~sS~i~~~~a  330 (439)
T PRK00701        301 SPLLGAAAATLFGIALLASGLSSTVVGTLA  330 (439)
T ss_pred             HHHHhHHHHHHHHHHHHHhHhHHHhHHHHH
Confidence            4555554 4777777766655555443333

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=86.08  E-value=21  Score=30.56  Aligned_cols=40  Identities=8%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             hHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9205          49 AVAVTFGGKIYKELV-WIIPILVAMSTFGGVNGILFTSARL   88 (220)
Q Consensus        49 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~sR~   88 (220)
                      .......++.+|..+ .++.+.++++|+.+..+.+.+++..
T Consensus       263 ~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef  303 (431)
T COG1114         263 QILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF  303 (431)
T ss_pred             HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556678888875 7888899999999999988888753

>PRK10745 trkD potassium transport protein Kup; Provisional

Probab=86.07  E-value=6.8  Score=35.17  Aligned_cols=83  Identities=13%  Similarity=0.063  Sum_probs=43.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCch-hhhhhchh------------hHHHHHHHH--hhhcHHHH
Q psy9205          61 ELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPP-LFSYIHIK------------ICLMSVLML--VTSDVFAL  125 (220)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~-~f~~~~~~------------~~~~~~~~~--~~~~~~~l  125 (220)
                      +..+.+.+.+.++..-+-.+.+.++=-+..+.-+-|.+|+ ...+++++            ...++++..  .+.+-+.+
T Consensus       284 ~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~L  363 (622)
T PRK10745        284 WALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNL  363 (622)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHH
Confidence            3334444433333333333444444455556667799993 23444444            122222222  34566778


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy9205         126 INYMSVALWLSVGACTAG  143 (220)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~  143 (220)
                      .+.-+++......++.+-
T Consensus       364 a~AYGiAVt~tM~iTT~L  381 (622)
T PRK10745        364 AAAYGIAVTGTMVLTSIL  381 (622)
T ss_pred             HHHhhhhheeHhHHHHHH
Confidence            888787776666666443

>PLN00151 potassium transporter; Provisional

Probab=84.40  E-value=16  Score=34.05  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchh-hhhhchh------------hHHH-HHHHH-h
Q psy9205          54 FGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPL-FSYIHIK------------ICLM-SVLML-V  118 (220)
Q Consensus        54 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~~------------~~~~-~~~~~-~  118 (220)
                      ++.....++.+.+.++++++..-+-.+.+.++=-+....-+-|.+|+. .-|++++            ...+ ++... .
T Consensus       409 Fy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~  488 (852)
T PLN00151        409 FFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCS  488 (852)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheee
Confidence            444444444455544444444444444555555555566677999933 3444444            1222 22222 3


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHH
Q psy9205         119 TSDVFALINYMSVALWLSVGACTA  142 (220)
Q Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~  142 (220)
                      +.+-..+.+..+++......++.+
T Consensus       489 F~~s~~l~~AYGiAV~~vM~iTT~  512 (852)
T PLN00151        489 FRSITDIGNAYGIAEVGVMMVSTI  512 (852)
T ss_pred             ecCHHHHHHHhhhhhhhhhhHHHH
Confidence            456677887777777666666543

>TIGR00813 sss transporter, SSS family

Probab=84.33  E-value=24  Score=29.89  Aligned_cols=79  Identities=9%  Similarity=0.038  Sum_probs=39.1

Q ss_pred             ccChhHHHHHHHHHHHHHHHHHHH---HHHhccCh--hhhc-----cchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHH
Q psy9205          10 TLNLPRAIWIAMPIVTLVYVCANV---AYFTVLTK--EEML-----TSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGV   78 (220)
Q Consensus        10 ~~~~p~ai~~~~~~~~~~y~~~~~---~~~~~~~~--~~~~-----~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~   78 (220)
                      +|+..|+...+.......+.+...   ......+.  +++.     +.+.....+..+.+|+ ..-++.++++.+..++.
T Consensus       232 ~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agilaA~mST~  311 (407)
T TIGR00813       232 AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAILAAVMSTL  311 (407)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHHHHHHHHhh
Confidence            567778887776655554433221   11111111  1111     2222222333444444 45666666666777777


Q ss_pred             HHHHhhhhHH
Q psy9205          79 NGILFTSARL   88 (220)
Q Consensus        79 ~~~~~~~sR~   88 (220)
                      .+.+.+.+-.
T Consensus       312 ~s~l~a~ss~  321 (407)
T TIGR00813       312 SSQLNSASTV  321 (407)
T ss_pred             hhhHHHHHHH
Confidence            7666666554

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PLN00150 potassium ion transporter family protein; Provisional

Probab=83.91  E-value=13  Score=34.26  Aligned_cols=89  Identities=17%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHhhccCCCchh-hhhhchh------------hHHHHHHHH--h
Q psy9205          54 FGGKIYKELVWIIPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPL-FSYIHIK------------ICLMSVLML--V  118 (220)
Q Consensus        54 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~-f~~~~~~------------~~~~~~~~~--~  118 (220)
                      ++....++..+.+.+.+.++..-+-.+.+.++=-+....-+-|.+|+. .-+++++            ...++++..  .
T Consensus       349 Ff~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~  428 (779)
T PLN00150        349 FYRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAG  428 (779)
T ss_pred             HHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEE
Confidence            334444444455555544444444445555555556666678999933 3445554            122222222  3


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHH
Q psy9205         119 TSDVFALINYMSVALWLSVGACTA  142 (220)
Q Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~  142 (220)
                      +.+-..+.+..+++......++.+
T Consensus       429 F~~s~~l~~AYGiAV~~vM~iTT~  452 (779)
T PLN00150        429 FRDTDEIGNAYGIAVVGVMIITTC  452 (779)
T ss_pred             ecChHHHHHHhhhheehhhHHHHH
Confidence            456677887777777666666543

>PF14256 YwiC: YwiC-like protein

Probab=82.97  E-value=14  Score=26.07  Aligned_cols=22  Identities=18%  Similarity=0.022  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhccC
Q psy9205         130 SVALWLSVGACTAGLISLRFTQ  151 (220)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~r~~~  151 (220)
                      ..+.+..|....-....+|.|+
T Consensus        31 ~~aw~~~yl~~~p~~~~~k~r~   52 (129)
T PF14256_consen   31 LLAWLFGYLAFYPFLLWLKQRR   52 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc
Confidence            4445556665544444555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	7e-18
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	1e-10
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	5e-10

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 80.5 bits (199), Expect = 7e-18
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 22/216 (10%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKELV-WIIPILV 70
           N+P A    + I  + YV +  A   ++    +  S +           +    I+    
Sbjct: 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCA 282

Query: 71  AMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH----------IKICLMSVLMLVTS 120
           A    G + G    + +     + +G  PP+F+ ++          I   LM++  L + 
Sbjct: 283 AAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSI 342

Query: 121 DVFALINYMSVALWLSVGA------CTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIF 174
              A   +  V+    +          A L+ L        RP   +L++  I    CI+
Sbjct: 343 SPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA--YLAVTTIAFLYCIW 400

Query: 175 LVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSK 210
            VV          + S   +     +Y +      K
Sbjct: 401 AVVGS---GAKEVMWSFVTLMVITAMYALNYNRLHK 433

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 33/229 (14%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFG------GKIYKELVWI 65
           + P A+ + M     +     ++   V+   E+  S  V  TF           +  V +
Sbjct: 233 DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRV 292

Query: 66  IPILVAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIH-----------------IK 108
           I  L+ +     +   +   +R     +Q+  LP  F+ ++                 I 
Sbjct: 293 ISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIA 352

Query: 109 ICLMSVLMLVTSDVFALINYMSVALWLSVGACT-AGLISLRFTQPDLHRPIKVHLS---- 163
           + +++      +  F +   ++V ++L        G I L    PDL R   +       
Sbjct: 353 LIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVK 412

Query: 164 -----LPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKW 207
                + ++       +  +P      ++      +     +  + + +
Sbjct: 413 LVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPF 461

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 32/209 (15%), Positives = 72/209 (34%), Gaps = 14/209 (6%)

Query: 12  NLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS--PAVAVTFGGKIYKELVWIIPIL 69
           N+PRAI+I++ IV  VYV   ++    L  +E++ +   A+AV     +      +I I 
Sbjct: 220 NVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIG 279

Query: 70  VAMSTFGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK--------ICLMSVLMLVTSD 121
              S    +N  ++  A +  + +++G LP  F                 + VL  +  +
Sbjct: 280 ALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFN 339

Query: 122 VFALINYMSVALWLSVGACTAGLISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTI 181
           +  + +  S    +           L          +     + +      ++   +   
Sbjct: 340 MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNR 399

Query: 182 REPMNTVISLFIIASGVPVYYVCVKWKSK 210
                    +     GV ++ +  +  +K
Sbjct: 400 ----FVFYGIIATFIGVLIFEIIYRKVTK 424

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.96
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.96
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.95
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	91.66

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.96  E-value=7.5e-28  Score=207.09  Aligned_cols=205  Identities=15%  Similarity=0.187  Sum_probs=157.4

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHH--Hhc----cchhHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGG--KIY----KELVWIIPILVAMST   74 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----g~~~~~~~~~~~~~~   74 (220)
                      +.+||+|||+|++|||+..++.+++++|++..++.....|+++...+++....+..  ...    ++...++.+..+++.
T Consensus       222 ~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  301 (511)
T 4djk_A          222 THVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGV  301 (511)
T ss_dssp             GGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHH
T ss_pred             HHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999998887665544333322  222    235678888999999


Q ss_pred             HHHHHHHHhhhhHHHHHhhccCCCchhhhhhchh---------hHHH-HHHHHhhh--------cHHHHHHHHHHHHHHH
Q psy9205          75 FGGVNGILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLM-SVLMLVTS--------DVFALINYMSVALWLS  136 (220)
Q Consensus        75 ~~~~~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~-~~~~~~~~--------~~~~l~~~~~~~~~~~  136 (220)
                      +++.++.+++.||++++|||||.+|++|+|+|++         ...+ ++.+...+        .++.+.++.++..++.
T Consensus       302 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  381 (511)
T 4djk_A          302 LAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCA  381 (511)
T ss_dssp             HHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCCSSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCCcccHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987         1111 11222222        3678999999999999


Q ss_pred             HHHHHHHHHhhhccCCCCCCCcccch------HHHHHHHHHHHHHHHhhcccCc---------hHHHHHHHHHHHhhhhh
Q psy9205         137 VGACTAGLISLRFTQPDLHRPIKVHL------SLPIIFLACCIFLVVVPTIREP---------MNTVISLFIIASGVPVY  201 (220)
Q Consensus       137 ~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~  201 (220)
                      |.+..++++++|+++++.+||||.|.      .+++++++.+++.++..+++..         +......++++++.+.|
T Consensus       382 y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~  461 (511)
T 4djk_A          382 YFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPF  461 (511)
T ss_dssp             HHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888889999982      4677788888887776665532         33444445555555555


Q ss_pred             hheh
Q psy9205         202 YVCV  205 (220)
Q Consensus       202 ~~~~  205 (220)
                      +.++
T Consensus       462 ~~~~  465 (511)
T 4djk_A          462 ILYA  465 (511)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.96  E-value=2.9e-28  Score=206.23  Aligned_cols=206  Identities=14%  Similarity=0.154  Sum_probs=164.8

Q ss_pred             ccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccchhHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHH
Q psy9205           2 SKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTSPAVAVTFGGKIYKE-LVWIIPILVAMSTFGGVNG   80 (220)
Q Consensus         2 ~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~   80 (220)
                      .+||+|||+|++|||+..+...++++|++.+++.....|.+++.+++.+.....+...+. ...++.+..+++.+++.++
T Consensus       213 ~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  292 (445)
T 3l1l_A          213 AAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGG  292 (445)
T ss_dssp             GGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHH
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999888766555555566665555 5688899999999999999


Q ss_pred             HHhhhhHHHHHhhccCCCchhhhhhchh---------hHHHHHHHHh-------hhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy9205          81 ILFTSARLFLTGSQEGHLPPLFSYIHIK---------ICLMSVLMLV-------TSDVFALINYMSVALWLSVGACTAGL  144 (220)
Q Consensus        81 ~~~~~sR~l~~~a~dg~lP~~f~~~~~~---------~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~  144 (220)
                      .+++.+|++++|+|||.+|++|+|+|++         +.+++.+...       .+.++.+.++.++..++.|.+.++++
T Consensus       293 ~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~  372 (445)
T 3l1l_A          293 WTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAAL  372 (445)
T ss_dssp             HHHHHHHHHHHHHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987         2222222221       14578899999999999999999999


Q ss_pred             HhhhccCCCCCCCcccchHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHhhhhhhhehhhhccch
Q psy9205         145 ISLRFTQPDLHRPIKVHLSLPIIFLACCIFLVVVPTIREPMNTVISLFIIASGVPVYYVCVKWKSKPA  212 (220)
Q Consensus       145 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  212 (220)
                      +++|+|+| .+| ++...+++.++.+.+++.++   ..++.....+.++++.|.++|...++++++.+
T Consensus       373 ~~~r~~~~-~~r-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~  435 (445)
T 3l1l_A          373 LLLGHGHF-GKA-RPAYLAVTTIAFLYCIWAVV---GSGAKEVMWSFVTLMVITAMYALNYNRLHKNP  435 (445)
T ss_dssp             HHHHSSSS-GGG-CTTTHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred             HHHhhcCc-ccc-cchhHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence            99998876 333 22333777777777777765   34556677788889999999987666655543

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.95  E-value=1.1e-26  Score=196.60  Aligned_cols=203  Identities=15%  Similarity=0.132  Sum_probs=153.9

Q ss_pred             CccccccccccChhHHHHHHHHHHHHHHHHHHHHHHhccChhhhccc-hhHHHHHHHHhccch-hHHHHHHHHHHHHHHH
Q psy9205           1 MSKEQGFQITLNLPRAIWIAMPIVTLVYVCANVAYFTVLTKEEMLTS-PAVAVTFGGKIYKEL-VWIIPILVAMSTFGGV   78 (220)
Q Consensus         1 ~~a~E~k~p~~~~p~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~   78 (220)
                      +.+||+|||+|++|||+..+...++++|++.+++.....|.+++.++ +.+.....+...|.. ..++.+..+++.+++.
T Consensus       209 ~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~  288 (444)
T 3gia_A          209 NASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAM  288 (444)
T ss_dssp             TTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999998887653 334444445544543 5788889999999999


Q ss_pred             HHHHhhhhHHHHHhhccCCCchhhhhhchh--------hHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy9205          79 NGILFTSARLFLTGSQEGHLPPLFSYIHIK--------ICLMSVLMLVTSDVFALINYMSVALWLSVGACTAGLISLRFT  150 (220)
Q Consensus        79 ~~~~~~~sR~l~~~a~dg~lP~~f~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~  150 (220)
                      ++.+++.||++++|||||.+|++|+|+|++        +.+++.++....+++.+.++.+.+.++.|.+.+++++++||+
T Consensus       289 ~~~~~~~sR~l~a~a~dg~lP~~f~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~  368 (444)
T 3gia_A          289 NATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDE  368 (444)
T ss_dssp             HHHHTTTHHHHHHHHHHSSCCSSCCTTSCCSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHhCCCCCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999877        334444555556899999999999999999999999999987


Q ss_pred             CCCCCCCcccchHHHHHHHHHHHHHHHhhcc----cCchHHHHHHHHHHHhhhhhhhehhhhcc
Q psy9205         151 QPDLHRPIKVHLSLPIIFLACCIFLVVVPTI----REPMNTVISLFIIASGVPVYYVCVKWKSK  210 (220)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  210 (220)
                      +|+.  +     +.+.++++.+.+++....+    .++........+.+...+++..++++++|
T Consensus       369 ~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (444)
T 3gia_A          369 VGGR--K-----EIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKR  425 (444)
T ss_dssp             HCCC--H-----HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCc--c-----hHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            6542  1     4556666666655543322    23344445555555555555555554443

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=91.66  E-value=5.6  Score=33.69  Aligned_cols=31  Identities=16%  Similarity=0.190  Sum_probs=22.3

Q ss_pred             hHHHH-HHHHHHHHHHHHH-HHhhhhHHHHHhh
Q psy9205          63 VWIIP-ILVAMSTFGGVNG-ILFTSARLFLTGS   93 (220)
Q Consensus        63 ~~~~~-~~~~~~~~~~~~~-~~~~~sR~l~~~a   93 (220)
                      +.+.. +..+++.+++... ..++.+--+..+.
T Consensus       298 ~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~  330 (501)
T 2jln_A          298 MAILFQVFVLLATWSTNPAANLLSPAYTLCSTF  330 (501)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhC
Confidence            56666 7777777777763 7888888777773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00