Psyllid ID: psy9206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MTLNGNVSANGVEVKSTEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACLCK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEccccccEEEEEEEEEccEEEccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEEEEEEEEHcEEEEEEEEEccccEEEccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtlngnvsangvevkstegspikVQMKRKITLLGGVSIIVGCIIgsgifvspagvlaetQSVGLSIVIWTVCGLLSTIGALCYAELGtcisrsggdYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQyaikpffpdselpDRAVLLLAAACLCkngnaikpffpdselpDRAVLLLAAACLCK
Flexible Loop (DISEMBL)
mtlngnvsangvevkstegspikvqMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACLCK
Low Complexity Region (SEG)
MTLNGNVSANGVEVKSTEGSPIKVQMKRKITLLggvsiivgciigsgifvsPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRavlllaaaclcKNGNAIKPFFPDSELPDRavlllaaaclcK
Disordered region (IsUnstruct)
***********************VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACLC*
Disordered Region (DISOPRED)
******************************TLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACLCK
Disordered Region (DISEMBL)
***************STEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACLCK
Disordered Region (DISPRO)
*********************IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACLCK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLNGNVSANGVEVKSTEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACLCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q8BGK6	515	Y+L amino acid transporte	yes	N/A	0.757	0.279	0.611	5e-45
Q8MH63	180	Putative L-type amino aci	yes	N/A	0.715	0.755	0.602	3e-43
Q9Z127	512	Large neutral amino acids	no	N/A	0.668	0.248	0.645	1e-42
Q92536	515	Y+L amino acid transporte	yes	N/A	0.815	0.300	0.550	2e-42
Q7YQK4	503	Large neutral amino acids	no	N/A	0.715	0.270	0.602	2e-42
Q63016	512	Large neutral amino acids	no	N/A	0.668	0.248	0.637	3e-42
Q01650	507	Large neutral amino acids	no	N/A	0.668	0.250	0.629	6e-42
Q59I64	468	Y+L amino acid transporte	no	N/A	0.721	0.292	0.591	7e-42
Q9UM01	511	Y+L amino acid transporte	no	N/A	0.736	0.273	0.607	1e-41
Q28I80	514	Y+L amino acid transporte	no	N/A	0.721	0.266	0.583	1e-41

>sp|Q8BGK6|YLAT2_MOUSE Y+L amino acid transporter 2 OS=Mus musculus GN=Slc7a6 PE=2 SV=1

 Score =  180 bits (456), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 113/144 (78%)

Query: 17  TEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS 76
           ++GSP  +Q+K++I+LL GVS++VG +IGSGIFVSP GVL  T S GLS+++W + GL S
Sbjct: 32  SQGSPETMQLKKEISLLNGVSLVVGNMIGSGIFVSPKGVLKYTASYGLSLIVWAIGGLFS 91

Query: 77  TIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYA 136
            +GALCYAELGT I++SG  YAYIL AFG   AF+RLWV+LLI+ PT+QAI+A+TFA Y 
Sbjct: 92  VVGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLIVEPTSQAIIAITFANYI 151

Query: 137 IKPFFPDSELPDRAVLLLAAACLC 160
           IKP FP  + P  A  LLAAAC+C
Sbjct: 152 IKPSFPTCDPPYVACRLLAAACVC 175

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial cells.
Mus musculus (taxid: 10090)

>sp|Q8MH63|LAT1N_HUMAN Putative L-type amino acid transporter 1-like protein MLAS OS=Homo sapiens GN=SLC7A5P1 PE=5 SV=1

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 105/136 (77%)

Query: 24  VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
           V ++R ITLL GV+IIVG IIGSGIFV+P GVL E  S GL++V+W  CG+ S +GALCY
Sbjct: 44  VTLQRNITLLNGVAIIVGAIIGSGIFVTPTGVLKEAGSPGLALVMWAACGVFSIVGALCY 103

Query: 84  AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143
           AELGT IS+SGGDYAY+L  +G LPAFL+LW+ LL++RP++Q IVAL FA Y +KP FP 
Sbjct: 104 AELGTTISKSGGDYAYMLDVYGSLPAFLKLWIELLVIRPSSQYIVALVFATYLLKPLFPS 163

Query: 144 SELPDRAVLLLAAACL 159
             +P+ A  L+A  C+
Sbjct: 164 CPVPEEAAKLMACHCV 179

Homo sapiens (taxid: 9606)

>sp|Q9Z127|LAT1_MOUSE Large neutral amino acids transporter small subunit 1 OS=Mus musculus GN=Slc7a5 PE=1 SV=2

 Score =  172 bits (436), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/127 (64%), Positives = 101/127 (79%)

Query: 24  VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
           V ++R ITLL GV+IIVG IIGSGIFV+P GVL E  S GLS+V+W VCG+ S +GALCY
Sbjct: 45  VTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGVFSIVGALCY 104

Query: 84  AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143
           AELGT IS+SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q IVAL FA Y +KP FP 
Sbjct: 105 AELGTTISKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYIVALVFATYLLKPVFPT 164

Query: 144 SELPDRA 150
             +P+ A
Sbjct: 165 CPVPEEA 171

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Mus musculus (taxid: 10090)

>sp|Q92536|YLAT2_HUMAN Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3

 Score =  172 bits (435), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 115/158 (72%), Gaps = 3/158 (1%)

Query: 6   NVSANGVEVKST---EGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSV 62
           N S + VE   +   + S   +Q+K++I+LL GVS++VG +IGSGIFVSP GVL  T S 
Sbjct: 18  NTSQSQVEEDVSSPPQRSSETMQLKKEISLLNGVSLVVGNMIGSGIFVSPKGVLVHTASY 77

Query: 63  GLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRP 122
           G+S+++W + GL S +GALCYAELGT I++SG  YAYIL AFG   AF+RLWV+LL++ P
Sbjct: 78  GMSLIVWAIGGLFSVVGALCYAELGTTITKSGASYAYILEAFGGFIAFIRLWVSLLVVEP 137

Query: 123 TTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLC 160
           T QAI+A+TFA Y I+P FP  + P  A  LLAAAC+C
Sbjct: 138 TGQAIIAITFANYIIQPSFPSCDPPYLACRLLAAACIC 175

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial (RPE) cells.

Homo sapiens (taxid: 9606)

>sp|Q7YQK4|LAT1_RABIT Large neutral amino acids transporter small subunit 1 OS=Oryctolagus cuniculus GN=SLC7A5 PE=1 SV=1

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 103/136 (75%)

Query: 15  KSTEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGL 74
           +  E     V ++R ITLL GV+IIVG IIGSGIFV+P GVL E  S GLS+V+W VCG+
Sbjct: 31  REAEAEGEGVALQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGV 90

Query: 75  LSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQ 134
            S +GALCYAELGT I++SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q IVAL FA 
Sbjct: 91  FSIVGALCYAELGTTITKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYIVALVFAT 150

Query: 135 YAIKPFFPDSELPDRA 150
           Y +KP FP   +P+ A
Sbjct: 151 YLLKPVFPTCPVPEEA 166

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q63016|LAT1_RAT Large neutral amino acids transporter small subunit 1 OS=Rattus norvegicus GN=Slc7a5 PE=1 SV=2

 Score =  171 bits (433), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/127 (63%), Positives = 101/127 (79%)

Query: 24  VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
           V ++R ITL+ GV+IIVG IIGSGIFV+P GVL E  S GLS+V+W VCG+ S +GALCY
Sbjct: 45  VTLQRNITLINGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLSLVVWAVCGVFSIVGALCY 104

Query: 84  AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143
           AELGT IS+SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q IVAL FA Y +KP FP 
Sbjct: 105 AELGTTISKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYIVALVFATYLLKPVFPT 164

Query: 144 SELPDRA 150
             +P+ A
Sbjct: 165 CPVPEEA 171

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Rattus norvegicus (taxid: 10116)

>sp|Q01650|LAT1_HUMAN Large neutral amino acids transporter small subunit 1 OS=Homo sapiens GN=SLC7A5 PE=1 SV=2

 Score =  170 bits (430), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 80/127 (62%), Positives = 100/127 (78%)

Query: 24  VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
           V ++R ITLL GV+IIVG IIGSGIFV+P GVL E  S GL++V+W  CG+ S +GALCY
Sbjct: 44  VTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLALVVWAACGVFSIVGALCY 103

Query: 84  AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143
           AELGT IS+SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q IVAL FA Y +KP FP 
Sbjct: 104 AELGTTISKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYIVALVFATYLLKPLFPT 163

Query: 144 SELPDRA 150
             +P+ A
Sbjct: 164 CPVPEEA 170

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane in tissues such as placenta. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. May play an important role in high-grade gliomas. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Homo sapiens (taxid: 9606)

>sp|Q59I64|YLAT2_DANRE Y+L amino acid transporter 2 OS=Danio rerio GN=slc7a6 PE=2 SV=1

 Score =  170 bits (430), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 107/137 (78%)

Query: 24  VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
           +Q+K++I+LL GVS+IVG +IGSGIFVSP GVL  + S GLS+VIW + G+ S +GALCY
Sbjct: 1   MQLKKEISLLNGVSLIVGNMIGSGIFVSPKGVLIYSASYGLSLVIWAIGGIFSVVGALCY 60

Query: 84  AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143
           AELGT I++SG  YAYIL +FG   AF+RLW +LLI+ PT+QA++A+TFA Y ++P FP 
Sbjct: 61  AELGTTITKSGASYAYILESFGGFIAFIRLWTSLLIIEPTSQAVIAITFANYLVQPLFPT 120

Query: 144 SELPDRAVLLLAAACLC 160
            E P  A  L+AAAC+C
Sbjct: 121 CEPPYSASRLIAAACIC 137

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Danio rerio (taxid: 7955)

>sp|Q9UM01|YLAT1_HUMAN Y+L amino acid transporter 1 OS=Homo sapiens GN=SLC7A7 PE=1 SV=2

 Score =  169 bits (428), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 105/140 (75%)

Query: 21  PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGA 80
           P +V++K++I+LL GV +IVG +IGSGIFVSP GVL  + S GLS+VIW V GL S  GA
Sbjct: 28  PEQVKLKKEISLLNGVCLIVGNMIGSGIFVSPKGVLIYSASFGLSLVIWAVGGLFSVFGA 87

Query: 81  LCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF 140
           LCYAELGT I +SG  YAYIL AFG   AF+RLW +LLI+ PT+QAI+A+TFA Y ++P 
Sbjct: 88  LCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPL 147

Query: 141 FPDSELPDRAVLLLAAACLC 160
           FP    P  A  LLAAAC+C
Sbjct: 148 FPSCFAPYAASRLLAAACIC 167

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes.

Homo sapiens (taxid: 9606)

>sp|Q28I80|YLAT2_XENTR Y+L amino acid transporter 2 OS=Xenopus tropicalis GN=slc7a6 PE=2 SV=1

 Score =  169 bits (427), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 80/137 (58%), Positives = 107/137 (78%)

Query: 24  VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
           +Q+K++I+LL GVS+IVG +IGSGIFVSP GVL  + S GLS+++W++ G+ S IGALCY
Sbjct: 34  MQLKKEISLLNGVSLIVGNMIGSGIFVSPKGVLIYSASYGLSLILWSLGGIFSVIGALCY 93

Query: 84  AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143
           AELGT I +SG  YAYIL AFG+  AF+RLW +LLI+ PT+QA++A+TFA Y ++P FP 
Sbjct: 94  AELGTTIKKSGASYAYILEAFGDFVAFIRLWTSLLIIEPTSQAVIAITFANYLVQPVFPS 153

Query: 144 SELPDRAVLLLAAACLC 160
              P  A  L+AAAC+C
Sbjct: 154 CYPPYMASRLIAAACVC 170

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
347972270	247	AGAP013073-PA [Anopheles gambiae str. PE	0.726	0.558	0.753	8e-53
195472295	498	GE12468 [Drosophila yakuba] gi|194174537	0.721	0.275	0.708	3e-50
195350981	500	GM26373 [Drosophila sechellia] gi|194123	0.721	0.274	0.708	3e-50
194861394	498	GG10278 [Drosophila erecta] gi|190661641	0.721	0.275	0.708	4e-50
19921172	500	JhI-21, isoform A [Drosophila melanogast	0.721	0.274	0.700	8e-50
125986780	496	GA11552 [Drosophila pseudoobscura pseudo	0.794	0.304	0.652	1e-49
195578661	498	GD22136 [Drosophila simulans] gi|1941911	0.794	0.303	0.631	3e-49
194766009	502	GF23476 [Drosophila ananassae] gi|190617	0.815	0.308	0.634	4e-49
157103462	507	cationic amino acid transporter [Aedes a	0.815	0.305	0.703	1e-48
170029052	512	cationic amino acid transporter [Culex q	0.726	0.269	0.760	9e-48

>gi|347972270|ref|XP_003436870.1| AGAP013073-PA [Anopheles gambiae str. PEST] gi|347972272|ref|XP_003436871.1| AGAP013073-PB [Anopheles gambiae str. PEST] gi|333469328|gb|EGK97252.1| AGAP013073-PA [Anopheles gambiae str. PEST] gi|333469329|gb|EGK97253.1| AGAP013073-PB [Anopheles gambiae str. PEST]

 Score =  211 bits (538), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 119/138 (86%)

Query: 23  KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
           KV +KRKITL+ GV IIVG IIGSGIF+SP GV   T+SVG S+VIWT+ G+LST+GALC
Sbjct: 25  KVVLKRKITLINGVGIIVGTIIGSGIFISPTGVFVFTRSVGSSLVIWTLSGILSTLGALC 84

Query: 83  YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
           YAELGTCI+RSGGDYAY+LVAFG L  FLRLW+ALLI+RPTTQAIVALTFAQYA++PFF 
Sbjct: 85  YAELGTCITRSGGDYAYLLVAFGPLVGFLRLWMALLIIRPTTQAIVALTFAQYAVRPFFE 144

Query: 143 DSELPDRAVLLLAAACLC 160
           D E P+ AV LLAA CLC
Sbjct: 145 DCEAPESAVRLLAAVCLC 162

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472295|ref|XP_002088436.1| GE12468 [Drosophila yakuba] gi|194174537|gb|EDW88148.1| GE12468 [Drosophila yakuba]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/137 (70%), Positives = 116/137 (84%)

Query: 23  KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
           K+ +KRK+TL+ GV+IIVG IIGSGIF++P GV   T+SVG S++IW  CG+LSTIGALC
Sbjct: 32  KIVLKRKLTLINGVAIIVGTIIGSGIFIAPTGVFLYTESVGSSLLIWLTCGILSTIGALC 91

Query: 83  YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
           YAELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVALTFA YA+KPFFP
Sbjct: 92  YAELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALTFAHYAVKPFFP 151

Query: 143 DSELPDRAVLLLAAACL 159
           + + P  AV LLAA CL
Sbjct: 152 ECDPPQNAVKLLAAICL 168

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350981|ref|XP_002042015.1| GM26373 [Drosophila sechellia] gi|194123839|gb|EDW45882.1| GM26373 [Drosophila sechellia]

 Score =  203 bits (516), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 97/137 (70%), Positives = 116/137 (84%)

Query: 23  KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
           K+ +KRK+TLL GV+IIVG IIGSGIF++P GV   T+SVG S++IW  CG+LSTIGALC
Sbjct: 34  KIVLKRKLTLLNGVAIIVGTIIGSGIFIAPTGVFIYTESVGSSLLIWLTCGILSTIGALC 93

Query: 83  YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
           YAELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVAL+FA YA+KPFFP
Sbjct: 94  YAELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKPFFP 153

Query: 143 DSELPDRAVLLLAAACL 159
           + + P  AV LLAA CL
Sbjct: 154 ECDPPQNAVKLLAAICL 170

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194861394|ref|XP_001969774.1| GG10278 [Drosophila erecta] gi|190661641|gb|EDV58833.1| GG10278 [Drosophila erecta]

 Score =  202 bits (515), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 97/137 (70%), Positives = 116/137 (84%)

Query: 23  KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
           K+ +KRK+TL+ GV+IIVG IIGSGIF++P GV   T+SVG S++IW  CG+LSTIGALC
Sbjct: 32  KIVLKRKLTLINGVAIIVGTIIGSGIFIAPTGVFFYTESVGSSLLIWLTCGILSTIGALC 91

Query: 83  YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
           YAELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVALTFA YA+KPFFP
Sbjct: 92  YAELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALTFAHYAVKPFFP 151

Query: 143 DSELPDRAVLLLAAACL 159
           + + P  AV LLAA CL
Sbjct: 152 ECDPPQNAVKLLAAICL 168

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921172|ref|NP_609542.1| JhI-21, isoform A [Drosophila melanogaster] gi|45550968|ref|NP_723717.2| JhI-21, isoform B [Drosophila melanogaster] gi|386769516|ref|NP_001245996.1| JhI-21, isoform C [Drosophila melanogaster] gi|14279692|gb|AAK58692.1|AF273478_1 amino acid transporter protein JHI-21 [Drosophila melanogaster] gi|7297908|gb|AAF53154.1| JhI-21, isoform A [Drosophila melanogaster] gi|15292125|gb|AAK93331.1| LD39658p [Drosophila melanogaster] gi|45445095|gb|AAN10800.2| JhI-21, isoform B [Drosophila melanogaster] gi|220946166|gb|ACL85626.1| JhI-21-PA [synthetic construct] gi|383291454|gb|AFH03670.1| JhI-21, isoform C [Drosophila melanogaster]

 Score =  202 bits (513), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 116/137 (84%)

Query: 23  KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
           K+ +KRK+TL+ GV+IIVG IIGSGIF++P GV   T+SVG S++IW  CG+LSTIGALC
Sbjct: 34  KIVLKRKLTLINGVAIIVGTIIGSGIFIAPTGVFIYTESVGSSLLIWLTCGILSTIGALC 93

Query: 83  YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
           YAELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVAL+FA YA+KPFFP
Sbjct: 94  YAELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKPFFP 153

Query: 143 DSELPDRAVLLLAAACL 159
           + + P  AV LLAA CL
Sbjct: 154 ECDPPQNAVKLLAAICL 170

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125986780|ref|XP_001357153.1| GA11552 [Drosophila pseudoobscura pseudoobscura] gi|195160016|ref|XP_002020872.1| GL14136 [Drosophila persimilis] gi|54645481|gb|EAL34220.1| GA11552 [Drosophila pseudoobscura pseudoobscura] gi|194117822|gb|EDW39865.1| GL14136 [Drosophila persimilis]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/161 (65%), Positives = 123/161 (76%), Gaps = 10/161 (6%)

Query: 9   ANGVE---VKSTEGSPI-------KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAE 58
           ANGV    V S+EG+P        K+ +KRK+TLL GV+IIVG IIGSGIF++P GV   
Sbjct: 6   ANGVTTSLVDSSEGAPKETPESDGKIVLKRKLTLLNGVAIIVGTIIGSGIFIAPTGVFLY 65

Query: 59  TQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALL 118
           T+SVG S++IW+ CG+LSTIGALCYAELGT I RSGGDYAY+LV FG L  FLRLW+ALL
Sbjct: 66  TESVGTSLLIWSACGILSTIGALCYAELGTSIMRSGGDYAYLLVCFGPLVGFLRLWIALL 125

Query: 119 IMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACL 159
           I+RPTTQ IVALTFA YA KPFF D + P  +V LLAA CL
Sbjct: 126 IIRPTTQTIVALTFAHYAAKPFFEDCDPPQNSVKLLAAVCL 166

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195578661|ref|XP_002079182.1| GD22136 [Drosophila simulans] gi|194191191|gb|EDX04767.1| GD22136 [Drosophila simulans]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/163 (63%), Positives = 122/163 (74%), Gaps = 12/163 (7%)

Query: 9   ANGVEVKSTE--------GSPI----KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVL 56
           ANGV     E        G+P     ++ +KRK+TLL GV+IIVG IIGSGIF++P GV 
Sbjct: 6   ANGVTTSLVEPTNGCAAPGNPADGEERIVLKRKLTLLNGVAIIVGTIIGSGIFIAPTGVF 65

Query: 57  AETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA 116
               SVGLS++IW  CG+LSTIGALCYAELGTCI+RSGGDYAY+LV+FG L  FLRLW+A
Sbjct: 66  KYADSVGLSLLIWLACGILSTIGALCYAELGTCITRSGGDYAYLLVSFGPLVGFLRLWIA 125

Query: 117 LLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACL 159
           LLI+RPTTQ IVAL+FA YA+KPFFP+   P  AV LLAA CL
Sbjct: 126 LLIIRPTTQTIVALSFAHYAVKPFFPECVPPQNAVKLLAAICL 168

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766009|ref|XP_001965117.1| GF23476 [Drosophila ananassae] gi|190617727|gb|EDV33251.1| GF23476 [Drosophila ananassae]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 122/156 (78%), Gaps = 1/156 (0%)

Query: 4   NGNVSANGVEVKSTEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVG 63
           NG   +     + ++G   K+ +KRK+TL+ GV+IIVG IIGSGIF++P GV   T+SVG
Sbjct: 18  NGRTPSTNGSKEPSQGED-KMVLKRKLTLINGVAIIVGTIIGSGIFIAPTGVFRYTESVG 76

Query: 64  LSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPT 123
            S++IW+ CG+LSTIGALCYAELGT I+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPT
Sbjct: 77  SSLLIWSACGILSTIGALCYAELGTSITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPT 136

Query: 124 TQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACL 159
           TQ IVALTFA YA+KPFF D + P  AV LLAA CL
Sbjct: 137 TQTIVALTFAHYAVKPFFEDCDPPPDAVKLLAAVCL 172

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157103462|ref|XP_001647992.1| cationic amino acid transporter [Aedes aegypti] gi|108880523|gb|EAT44748.1| AAEL003919-PA [Aedes aegypti]

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/155 (70%), Positives = 128/155 (82%)

Query: 6   NVSANGVEVKSTEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLS 65
           N + N +  K T G   KV +KRKITL+ G++IIVG IIGSGIFVSPAGV   T+SVG S
Sbjct: 3   NEAENQLTGKDTGGGGEKVVLKRKITLVNGITIIVGTIIGSGIFVSPAGVFLYTKSVGSS 62

Query: 66  IVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQ 125
           +VIW + G+LST+GALCYAELGTCI+RSGGDYAY+LVAFG L  FLRLW+ALLI+RPTTQ
Sbjct: 63  LVIWCLSGILSTLGALCYAELGTCITRSGGDYAYLLVAFGPLVGFLRLWMALLIIRPTTQ 122

Query: 126 AIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLC 160
           AIVALTFAQYA+KPFFP+ + PD +V LLAA CLC
Sbjct: 123 AIVALTFAQYAVKPFFPECDAPDNSVRLLAAVCLC 157

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029052|ref|XP_001842408.1| cationic amino acid transporter [Culex quinquefasciatus] gi|167879458|gb|EDS42841.1| cationic amino acid transporter [Culex quinquefasciatus]

 Score =  195 bits (495), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 121/138 (87%)

Query: 23  KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
           KV +KRKITL+ G++IIVG IIGSGIFVSPAGV   T+SVG S+VIWT+ G+LST+GALC
Sbjct: 26  KVVLKRKITLINGITIIVGTIIGSGIFVSPAGVFLYTKSVGSSLVIWTLSGILSTLGALC 85

Query: 83  YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
           YAELGTCI+RSGGDYAY+LVAFG L  FLRLW+ALLI+RPTTQAIVALTFAQYA+KPFFP
Sbjct: 86  YAELGTCITRSGGDYAYLLVAFGPLVGFLRLWMALLIIRPTTQAIVALTFAQYAVKPFFP 145

Query: 143 DSELPDRAVLLLAAACLC 160
           + + PD A  LLAA CLC
Sbjct: 146 ECDPPDNAARLLAAVCLC 163

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
FB|FBgn0028425	500	JhI-21 "JhI-21" [Drosophila me	0.657	0.25	0.6	1.4e-40
UNIPROTKB|E1C734	499	SLC7A11 "Uncharacterized prote	0.663	0.252	0.5	6.3e-35
UNIPROTKB|F1N9G9	526	LOC100859242 "Uncharacterized	0.752	0.271	0.482	1.5e-34
UNIPROTKB|F1NEI2	528	LOC100859242 "Uncharacterized	0.752	0.270	0.482	1.7e-34
UNIPROTKB|Q9TU26	505	LAT "Blood-brain barrier large	0.705	0.265	0.492	2.7e-34
UNIPROTKB|Q9UPY5	501	SLC7A11 "Cystine/glutamate tra	0.763	0.289	0.486	4.4e-34
UNIPROTKB|Q01650	507	SLC7A5 "Large neutral amino ac	0.726	0.272	0.496	7.1e-34
UNIPROTKB|Q8MH63	180	SLC7A5P1 "Putative L-type amin	0.657	0.694	0.512	3e-33
UNIPROTKB|F1PEX1	503	SLC7A11 "Uncharacterized prote	0.763	0.288	0.479	3.5e-33
UNIPROTKB|I3LUX3	249	LOC100623148 "Uncharacterized	0.663	0.506	0.523	3.8e-33

FB|FBgn0028425 JhI-21 "JhI-21" [Drosophila melanogaster (taxid:7227)]

 Score = 403 (146.9 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
 Identities = 75/125 (60%), Positives = 92/125 (73%)

Query:    23 KVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
             K+ +KRK+TL+                  P GV   T+SVG S++IW  CG+LSTIGALC
Sbjct:    34 KIVLKRKLTLINGVAIIVGTIIGSGIFIAPTGVFIYTESVGSSLLIWLTCGILSTIGALC 93

Query:    83 YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
             YAELGTCI+RSGGDYAY+LV+FG L  FLRLW+ALLI+RPTTQ IVAL+FA YA+KPFFP
Sbjct:    94 YAELGTCITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKPFFP 153

Query:   143 DSELP 147
             + + P
Sbjct:   154 ECDPP 158

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=NAS

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0060356 "leucine import" evidence=IMP

UNIPROTKB|E1C734 SLC7A11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 359 (131.4 bits), Expect = 6.3e-35, Sum P(2) = 6.3e-35
 Identities = 63/126 (50%), Positives = 85/126 (67%)

Query:    23 KVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
             KV +K+K+TLL                  P G+L  T SVG+S+++WT CG+LS  GALC
Sbjct:    35 KVVLKKKVTLLRGISIIIGTIIGAGIFISPKGILKNTGSVGMSLIVWTACGILSLFGALC 94

Query:    83 YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
             YAELGTCI +SGG Y YIL AFG LPAF+R+WV LL++RP   A+++L F +Y ++PFF 
Sbjct:    95 YAELGTCIKKSGGHYTYILEAFGPLPAFVRVWVELLVIRPAATAVISLAFGRYILEPFFM 154

Query:   143 DSELPD 148
               E+P+
Sbjct:   155 QCEIPE 160

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0070527 "platelet aggregation" evidence=IEA

UNIPROTKB|F1N9G9 LOC100859242 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 354 (129.7 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
 Identities = 70/145 (48%), Positives = 88/145 (60%)

Query:     4 NGNVSANGVEVKSTEGSPIKVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQSVG 63
             NG          + EG  + +Q  R ITL+                  P GVL E  S G
Sbjct:    45 NGCARTPSPTAAAAEGEGVALQ--RSITLINGVAIIVGTIIGSGIFVTPTGVLREAGSPG 102

Query:    64 LSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPT 123
             LS+V+W VCG  S +GALCYAELGT I++SGGDYAY+L  +G LPAFL+LW+ LLI+RP+
Sbjct:   103 LSLVVWAVCGAFSIVGALCYAELGTTITKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPS 162

Query:   124 TQAIVALTFAQYAIKPFFPDSELPD 148
             +Q IVAL FA Y +KP FP   +PD
Sbjct:   163 SQYIVALVFATYLLKPIFPSCPVPD 187

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NEI2 LOC100859242 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 354 (129.7 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 70/145 (48%), Positives = 88/145 (60%)

Query:     4 NGNVSANGVEVKSTEGSPIKVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQSVG 63
             NG          + EG  + +Q  R ITL+                  P GVL E  S G
Sbjct:    45 NGCARTPSPTAAAAEGEGVALQ--RSITLINGVAIIVGTIIGSGIFVTPTGVLREAGSPG 102

Query:    64 LSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPT 123
             LS+V+W VCG  S +GALCYAELGT I++SGGDYAY+L  +G LPAFL+LW+ LLI+RP+
Sbjct:   103 LSLVVWAVCGAFSIVGALCYAELGTTITKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPS 162

Query:   124 TQAIVALTFAQYAIKPFFPDSELPD 148
             +Q IVAL FA Y +KP FP   +PD
Sbjct:   163 SQYIVALVFATYLLKPIFPSCPVPD 187

GO:0016021 "integral to membrane" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q9TU26 LAT "Blood-brain barrier large neutral amino acid transporter" [Bos taurus (taxid:9913)]

 Score = 354 (129.7 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 66/134 (49%), Positives = 89/134 (66%)

Query:    15 KSTEGSPIKVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQSVGLSIVIWTVCGL 74
             +  +G+  +V ++R ITLL                  P GVL E  S GL++V+W VCG+
Sbjct:    33 RGADGAEGEVTLQRNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLALVVWAVCGV 92

Query:    75 LSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQ 134
              S +GALCYAELGT I++SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q IVAL FA 
Sbjct:    93 FSIVGALCYAELGTTITKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYIVALVFAT 152

Query:   135 YAIKPFFPDSELPD 148
             Y +KP FP   +P+
Sbjct:   153 YLLKPIFPTCPVPE 166

GO:0015196 "L-tryptophan transmembrane transporter activity" evidence=IDA

GO:0015820 "leucine transport" evidence=IDA

GO:0015192 "L-phenylalanine transmembrane transporter activity" evidence=IDA

GO:0015190 "L-leucine transmembrane transporter activity" evidence=IDA

GO:0015823 "phenylalanine transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9UPY5 SLC7A11 "Cystine/glutamate transporter" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
 Identities = 72/148 (48%), Positives = 91/148 (61%)

Query:     3 LNGNVSAN--GVEVKSTEGSPIKVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQ 60
             L GNV+     +  K   G   KVQ+KRK+TLL                  P GVL  T 
Sbjct:    16 LQGNVNGRLPSLGNKEPPGQE-KVQLKRKVTLLRGVSIIIGTIIGAGIFISPKGVLQNTG 74

Query:    61 SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIM 120
             SVG+S+ IWTVCG+LS  GAL YAELGT I +SGG Y YIL  FG LPAF+R+WV LLI+
Sbjct:    75 SVGMSLTIWTVCGVLSLFGALSYAELGTTIKKSGGHYTYILEVFGPLPAFVRVWVELLII 134

Query:   121 RPTTQAIVALTFAQYAIKPFFPDSELPD 148
             RP   A+++L F +Y ++PFF   E+P+
Sbjct:   135 RPAATAVISLAFGRYILEPFFIQCEIPE 162

GO:0016021 "integral to membrane" evidence=IEA

GO:0005791 "rough endoplasmic reticulum" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0070306 "lens fiber cell differentiation" evidence=IEA

GO:0070527 "platelet aggregation" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IDA

GO:0015327 "cystine:glutamate antiporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q01650 SLC7A5 "Large neutral amino acids transporter small subunit 1" [Homo sapiens (taxid:9606)]

 Score = 350 (128.3 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 70/141 (49%), Positives = 90/141 (63%)

Query:     8 SANGVEVKSTEGSPIKVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQSVGLSIV 67
             SA+G    + EG  + +Q  R ITLL                  P GVL E  S GL++V
Sbjct:    31 SADG-SAPAGEGEGVTLQ--RNITLLNGVAIIVGTIIGSGIFVTPTGVLKEAGSPGLALV 87

Query:    68 IWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAI 127
             +W  CG+ S +GALCYAELGT IS+SGGDYAY+L  +G LPAFL+LW+ LLI+RP++Q I
Sbjct:    88 VWAACGVFSIVGALCYAELGTTISKSGGDYAYMLEVYGSLPAFLKLWIELLIIRPSSQYI 147

Query:   128 VALTFAQYAIKPFFPDSELPD 148
             VAL FA Y +KP FP   +P+
Sbjct:   148 VALVFATYLLKPLFPTCPVPE 168

GO:0007399 "nervous system development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0042605 "peptide antigen binding" evidence=ISS

GO:0006810 "transport" evidence=TAS

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q8MH63 SLC7A5P1 "Putative L-type amino acid transporter 1-like protein MLAS" [Homo sapiens (taxid:9606)]

 Score = 343 (125.8 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 64/125 (51%), Positives = 83/125 (66%)

Query:    24 VQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
             V ++R ITLL                  P GVL E  S GL++V+W  CG+ S +GALCY
Sbjct:    44 VTLQRNITLLNGVAIIVGAIIGSGIFVTPTGVLKEAGSPGLALVMWAACGVFSIVGALCY 103

Query:    84 AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD 143
             AELGT IS+SGGDYAY+L  +G LPAFL+LW+ LL++RP++Q IVAL FA Y +KP FP 
Sbjct:   104 AELGTTISKSGGDYAYMLDVYGSLPAFLKLWIELLVIRPSSQYIVALVFATYLLKPLFPS 163

Query:   144 SELPD 148
               +P+
Sbjct:   164 CPVPE 168

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PEX1 SLC7A11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 344 (126.2 bits), Expect = 3.5e-33, Sum P(2) = 3.5e-33
 Identities = 71/148 (47%), Positives = 91/148 (61%)

Query:     3 LNGNVSAN--GVEVKSTEGSPIKVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQ 60
             L GNV+     +  K   G   KV +K+KITL+                  P GVL  T 
Sbjct:    16 LQGNVNGKLPSLGGKEPPGQE-KVVLKKKITLVRGISIIIGTIIGAGIFISPKGVLQNTG 74

Query:    61 SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIM 120
             SVG+S+VIWTVCG+LS  GAL YAELGT I +SGG Y YIL  FG LPAF+R+WV LLI+
Sbjct:    75 SVGMSLVIWTVCGVLSLFGALSYAELGTSIKKSGGHYTYILEVFGPLPAFVRVWVELLII 134

Query:   121 RPTTQAIVALTFAQYAIKPFFPDSELPD 148
             RP   A+++L F +Y ++PFF   E+P+
Sbjct:   135 RPAATAVISLAFGRYILEPFFIQCEIPE 162

GO:0070527 "platelet aggregation" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

UNIPROTKB|I3LUX3 LOC100623148 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 343 (125.8 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 66/126 (52%), Positives = 83/126 (65%)

Query:    23 KVQMKRKITLLXXXXXXXXXXXXXXXXXXPAGVLAETQSVGLSIVIWTVCGLLSTIGALC 82
             KV +K+KITLL                  P GVL  T SVGLS+V+WTVCG+LS  GAL 
Sbjct:    37 KVVLKKKITLLRGISIIIGTIIGAGIFISPKGVLQNTGSVGLSLVVWTVCGVLSLFGALS 96

Query:    83 YAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP 142
             YAELGT I +SGG Y YIL  FG LPAF+R+WV LLI+RP   A+++L F +Y ++PFF 
Sbjct:    97 YAELGTSIKKSGGHYTYILEVFGPLPAFVRVWVELLIIRPAATAVISLAFGRYILEPFFI 156

Query:   143 DSELPD 148
               E+P+
Sbjct:   157 QCEIPE 162

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q92536	YLAT2_HUMAN	No assigned EC number	0.5506	0.8157	0.3009	yes	N/A
Q8MH63	LAT1N_HUMAN	No assigned EC number	0.6029	0.7157	0.7555	yes	N/A
Q8BGK6	YLAT2_MOUSE	No assigned EC number	0.6111	0.7578	0.2796	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	190
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	1e-58
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	6e-12
PRK11357	445	PRK11357, frlA, putative fructoselysine transporte	1e-11
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	1e-11
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	2e-10
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	6e-10
TIGR00905	473	TIGR00905, 2A0302, transporter, basic amino acid/p	1e-05
PRK10644	445	PRK10644, PRK10644, arginine:agmatin antiporter; P	3e-04

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  191 bits (486), Expect = 1e-58
 Identities = 83/144 (57%), Positives = 105/144 (72%)

Query: 16  STEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLL 75
           ST      V +K++ITLL GV IIVG IIGSGIFVSP GVL    SVGL++++W VCG+ 
Sbjct: 30  STVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIF 89

Query: 76  STIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY 135
           S +GAL YAELGT I +SGG+Y YIL  FG L AFLRLW+ LL++RP +QA+ AL FA Y
Sbjct: 90  SIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIY 149

Query: 136 AIKPFFPDSELPDRAVLLLAAACL 159
            + P FPD E+P+ A+ L+A  C+
Sbjct: 150 ILTPVFPDCEVPEWAIRLVAVLCV 173

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 62.9 bits (153), Expect = 6e-12
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 7/108 (6%)

Query: 12  VEVKSTEGSPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WT 70
           V++ S E S    +MKR +T    +++ +G  IG+GI+V   G +A   S G +IV+ + 
Sbjct: 16  VDLDSREES----KMKRCLTTWDLMALGIGSTIGAGIYVL-TGEVARNDS-GPAIVLSFL 69

Query: 71  VCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALL 118
           + GL + +   CYAE G  + ++G  Y Y  V  GEL AF+  W  +L
Sbjct: 70  ISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLIL 117

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 33/111 (29%), Positives = 53/111 (47%)

Query: 25  QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 84
           +++RK+     ++I VG  +GSGIFVS   V     +  L+++ + + GL+       YA
Sbjct: 5   ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYA 64

Query: 85  ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY 135
           EL T    +G DY Y+  A     AFL  W +       + +I+AL     
Sbjct: 65  ELSTAYPENGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSN 115

Length = 445

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 4/130 (3%)

Query: 30  ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTC 89
           ++LL   ++++G IIGSGIFV+P   L  +      +  W    + S   AL YAEL + 
Sbjct: 1   LSLLSAFALVIGSIIGSGIFVTP---LIASAGAAAILWGWIAALIFSLAVALVYAELSSA 57

Query: 90  ISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDR 149
             R+GG Y ++  AFG+  AF+  W   L       +  ++  AQY +  FFPD      
Sbjct: 58  FPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSV-AAQYLLSAFFPDLVGNTW 116

Query: 150 AVLLLAAACL 159
               +A A L
Sbjct: 117 LTYGIAIAIL 126

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 25  QMKRKITLLGGV-SIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCY 83
           ++K+K+ L   + ++ VG +IGSGIF  P            +I+ W + G++    AL Y
Sbjct: 9   ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA---PAAILAWLIAGIIILFLALSY 65

Query: 84  AELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY 135
           AEL + I  +GG YAY   A G    FL  W+ LL       A +A+  A Y
Sbjct: 66  AELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAY-VIALAAIAIGAASY 116

Length = 466

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 26  MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAE 85
           + R++ L     + +G +IG+GIFV   G+ A      + I+ + + GL +   AL YAE
Sbjct: 1   LSRELGLFDLTMLGIGAMIGTGIFVV-TGIAAGKAGPAV-ILSFVLAGLTALFIALVYAE 58

Query: 86  LGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQY 135
           L   +  +G  Y Y   A GEL AF+  W  L +      A VA+ +  Y
Sbjct: 59  LAAMLPVAGSPYTYAYEAMGELTAFIIGWS-LWLEYGVAVAAVAVGWGGY 107

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 25  QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 84
              +K+ L    ++++G +IGSGIF  P   LA     G  I+ W + G+     A  +A
Sbjct: 4   AKSKKLGLFALTALVIGSMIGSGIFSLPQN-LASVAGPGAVIIGWIITGVGMLALAFVFA 62

Query: 85  ELGTCISR-SGGDYAYILVAFGELPAFLRLW 114
            L T      GG YAY    FG    F+  W
Sbjct: 63  ILATKKPELDGGIYAYAREGFGPYIGFMSGW 93

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 473

>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 11/82 (13%)

Query: 28  RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGAL----CY 83
            K+ L+    ++ G I+GSG+F+ PA  LA T   G++I  W    L++ IGAL     Y
Sbjct: 8   HKVGLIPVTLMVAGNIMGSGVFLLPAN-LASTG--GIAIYGW----LVTIIGALGLSMVY 60

Query: 84  AELGTCISRSGGDYAYILVAFG 105
           A++ +     GG YAY    FG
Sbjct: 61  AKMSSLDPSPGGSYAYARRCFG 82

Length = 445

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
TIGR00911	501	2A0308 L-type amino acid transporter.	99.89
KOG1287|consensus	479		99.88
KOG1289|consensus	550		99.88
PRK15049	499	L-asparagine permease; Provisional	99.88
PRK10249	458	phenylalanine transporter; Provisional	99.88
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.87
PRK10238	456	aromatic amino acid transporter; Provisional	99.86
PRK11387	471	S-methylmethionine transporter; Provisional	99.86
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.86
PRK10746	461	putative transport protein YifK; Provisional	99.85
PRK10836	489	lysine transporter; Provisional	99.85
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.85
PRK10644	445	arginine:agmatin antiporter; Provisional	99.84
PRK10580	457	proY putative proline-specific permease; Provision	99.84
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.83
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.83
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.83
PRK10655	438	potE putrescine transporter; Provisional	99.83
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.82
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.81
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.81
KOG1286|consensus	554		99.81
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.8
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.8
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.79
PRK11021	410	putative transporter; Provisional	99.79
TIGR00913	478	2A0310 amino acid permease (yeast).	99.78
TIGR00909	429	2A0306 amino acid transporter.	99.76
TIGR00930	953	2a30 K-Cl cotransporter.	99.72
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.7
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.7
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.63
PRK15238	496	inner membrane transporter YjeM; Provisional	99.57
PHA02764	399	hypothetical protein; Provisional	99.5
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.47
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.45
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.39
TIGR00912	359	2A0309 spore germination protein (amino acid perme	99.39
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.28
PF03845	320	Spore_permease: Spore germination protein; InterPr	98.41
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.24
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.22
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	98.13
PRK10483	414	tryptophan permease; Provisional	97.99
PRK09664	415	tryptophan permease TnaB; Provisional	97.87
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	97.69
PRK15132	403	tyrosine transporter TyrP; Provisional	97.59
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.41
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	97.33
KOG2083|consensus	643		97.24
KOG1303|consensus	437		97.08
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	96.78
PTZ00206	467	amino acid transporter; Provisional	96.38
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	96.1
KOG2082|consensus	1075		95.83
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	93.82
PRK11375	484	allantoin permease; Provisional	93.65
COG1457	442	CodB Purine-cytosine permease and related proteins	93.22
PLN03074	473	auxin influx permease; Provisional	91.9
KOG1288|consensus	945		90.38
KOG1304|consensus	449		90.36
TIGR00813	407	sss transporter, SSS family. have different number	89.73
PRK00701	439	manganese transport protein MntH; Reviewed	87.25
PF02133	440	Transp_cyt_pur: Permease for cytosine/purines, ura	84.63
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	83.68
COG3949	349	Uncharacterized membrane protein [Function unknown	82.4
PRK11017	404	codB cytosine permease; Provisional	80.17

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.89  E-value=5.6e-22  Score=172.23  Aligned_cols=162  Identities=51%  Similarity=0.917  Sum_probs=132.8

Q ss_pred             cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206          22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  101 (190)
Q Consensus        22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~  101 (190)
                      +++++||+++.++.++++++.++|+|++..++..+..+|+.|..+++|+++++..++.+++++|+++++|++||+|+|++
T Consensus        36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~  115 (501)
T TIGR00911        36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYIL  115 (501)
T ss_pred             cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHH
Confidence            56789999999999999999999999999999988888887766778999999999999999999999999999999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHH
Q psy9206         102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVL  181 (190)
Q Consensus       102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  181 (190)
                      +.+||+.||+++|.++....+...+..+..+++++...++++...+.+...+++.+++++++ .+|.+.  .+..++.|.
T Consensus       116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~-~ln~~G--vk~~~~~~~  192 (501)
T TIGR00911       116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLT-LVNCLS--VKWATRVQD  192 (501)
T ss_pred             hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHH-HHHHhh--hHHHHHHHH
Confidence            99999999999999876344566777777788887543566666666766777766666665 666664  455577776


Q ss_pred             HHHHH
Q psy9206         182 LLAAA  186 (190)
Q Consensus       182 ~~~~~  186 (190)
                      +++.+
T Consensus       193 i~~~~  197 (501)
T TIGR00911       193 IFTAC  197 (501)
T ss_pred             HHHHH
Confidence            66543

>KOG1287|consensus

Probab=99.88  E-value=2.9e-22  Score=169.60  Aligned_cols=163  Identities=60%  Similarity=0.970  Sum_probs=149.8

Q ss_pred             ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhH
Q psy9206          21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI  100 (190)
Q Consensus        21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~  100 (190)
                      +++.++|||+++++.+.+.++.++|+|+|..+..+..++|+.|.+++.|+.+++..+.-+++|+|+++++|++||.|.|.
T Consensus         5 ~~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi   84 (479)
T KOG1287|consen    5 GEEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI   84 (479)
T ss_pred             cccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence            34556889999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             HHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHH
Q psy9206         101 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAV  180 (190)
Q Consensus       101 ~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  180 (190)
                      .+.||++.+|...|..++...+...|..+..+++|..+.++|..++++...++++..++++++ .+|....|  .+++.|
T Consensus        85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt-~~n~~~V~--~a~~vq  161 (479)
T KOG1287|consen   85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLT-LINSFSVK--WATRVQ  161 (479)
T ss_pred             HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHH-HHhhhhhh--HHHHHH
Confidence            999999999999999999788888899999999996556888778899999999999999999 88888766  789999


Q ss_pred             HHHHHH
Q psy9206         181 LLLAAA  186 (190)
Q Consensus       181 ~~~~~~  186 (190)
                      .+++..
T Consensus       162 ~~ft~~  167 (479)
T KOG1287|consen  162 IVFTIA  167 (479)
T ss_pred             HHHHHH
Confidence            887753

>KOG1289|consensus

Probab=99.88  E-value=1.4e-22  Score=172.22  Aligned_cols=160  Identities=22%  Similarity=0.286  Sum_probs=128.5

Q ss_pred             CCcccCCCCCccccccccccchhHHHHHHhhhh-hcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9206          11 GVEVKSTEGSPIKVQMKRKITLLGGVSIIVGCI-IGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTC   89 (190)
Q Consensus        11 ~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~   89 (190)
                      ++|+++..+.++|||+||++++++.++.+++.+ .-.|+-.+-...+..+|+++ .+++|+++++..++++++++|++|+
T Consensus        31 ~~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~-~vwgwlIa~~~~i~va~slaEl~Sa  109 (550)
T KOG1289|consen   31 DSDEELLAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPT-LVWGWLIAGFFSICVALSLAELCSA  109 (550)
T ss_pred             cCCHHHHHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHH-HHHHHHHHHHHHHHHHhHHHHHHhh
Confidence            334444556789999999999999999999988 22344444344455566654 7788999999999999999999999


Q ss_pred             cccCcchHhhHHHH----hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh---CCCCCCcHHHHHHHHHHHHHHH
Q psy9206          90 ISRSGGDYAYILVA----FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPDSELPDRAVLLLAAACLCKN  162 (190)
Q Consensus        90 ~P~~GG~y~~~~~~----~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~  162 (190)
                      +|++||.|.|+...    ++|+.+|++||.+.+ ++....++..+..++.+++..   .|++.++.+++..+..++.++.
T Consensus       110 ~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~-g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~  188 (550)
T KOG1289|consen  110 MPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYL-GQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVH  188 (550)
T ss_pred             CCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHH-HHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHH
Confidence            99999999999775    889999999999999 777899999999999988753   5777778888777777777777


Q ss_pred             HhhhhhhcCCC
Q psy9206         163 GNAIKPFFPDS  173 (190)
Q Consensus       163 ~~~~~~~~~~~  173 (190)
                      . ++|....|+
T Consensus       189 ~-lln~~p~r~  198 (550)
T KOG1289|consen  189 G-LLNSLPTRV  198 (550)
T ss_pred             H-HHhcCCcHH
Confidence            6 777765444

>PRK15049 L-asparagine permease; Provisional

Probab=99.88  E-value=1.5e-21  Score=169.52  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=99.7

Q ss_pred             cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206          22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  101 (190)
Q Consensus        22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~  101 (190)
                      +++++||+++.+++.++++|.++|+|+|..++..+..+|+.  .+++|++++++.++++.+++||++++|++||+|+|++
T Consensus        22 ~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~--~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~   99 (499)
T PRK15049         22 HEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA--LALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAR   99 (499)
T ss_pred             CchhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            34469999999999999999999999999999999999875  5679999999999999999999999999999999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206         102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAI  137 (190)
Q Consensus       102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~  137 (190)
                      +.+||..||++||.+|+ .|....+.+....+.+..
T Consensus       100 ~~~G~~~gf~~GW~~~l-~~~~~~~~~~~a~~~~~~  134 (499)
T PRK15049        100 EFLGEKAAYVAGWMYFI-NWAMTGIVDITAVALYMH  134 (499)
T ss_pred             HHhCcHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999998 565555555555566554

>PRK10249 phenylalanine transporter; Provisional

Probab=99.88  E-value=2.5e-21  Score=166.46  Aligned_cols=119  Identities=18%  Similarity=0.227  Sum_probs=104.9

Q ss_pred             ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhH
Q psy9206          21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI  100 (190)
Q Consensus        21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~  100 (190)
                      ++++++||+++.+|+..+++|.++|+|+|..++..+..+|+.  .+++|++++++.++++++++|+++++|++||.|+|+
T Consensus        14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~--~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~   91 (458)
T PRK10249         14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA--VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFA   91 (458)
T ss_pred             CCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence            344579999999999999999999999999999999988874  778999999999999999999999999999999999


Q ss_pred             HHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206         101 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD  143 (190)
Q Consensus       101 ~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  143 (190)
                      ++.+||..||.+||.+|+ .+....+.+....+.++.. ++|+
T Consensus        92 ~~~~g~~~gf~~gw~~~~-~~~~~~~~~~~a~~~~~~~-~~~~  132 (458)
T PRK10249         92 YKYWGPFAGFLSGWNYWV-MFVLVGMAELTAAGIYMQY-WFPD  132 (458)
T ss_pred             HHHhChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCc
Confidence            999999999999999998 4545666677677777764 5553

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.87  E-value=2.6e-21  Score=167.06  Aligned_cols=162  Identities=18%  Similarity=0.131  Sum_probs=123.9

Q ss_pred             CCCccccccccccchhHHHHHHhhhh-hcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcch
Q psy9206          18 EGSPIKVQMKRKITLLGGVSIIVGCI-IGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGD   96 (190)
Q Consensus        18 ~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~   96 (190)
                      ++.+++|||||+++.++.++++++.+ ++.|++..++..+..+|+.  .+++|+++++..++++++++||++++|++||+
T Consensus         3 ~~~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~--~~~~~li~~i~~l~~als~aEL~s~~P~aGG~   80 (475)
T TIGR03428         3 QRFGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPA--FFWTWPVVFVGQLLVALNFAELAARYPISGAI   80 (475)
T ss_pred             hhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCH
Confidence            45688999999999999999999986 7899999999988888873  78899999999999999999999999999999


Q ss_pred             HhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh--------CCCCC-C-cHHHHHHHHHHHHHHHHhhh
Q psy9206          97 YAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF--------FPDSE-L-PDRAVLLLAAACLCKNGNAI  166 (190)
Q Consensus        97 y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~-~-~~~~~~~~~~~~l~~~~~~~  166 (190)
                      |+|+++.+||+.||++||.+++ ++....+........++...+        .+++. + +.++..++..+++++.+ ++
T Consensus        81 Y~~~~~~~g~~~gf~~gW~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i  158 (475)
T TIGR03428        81 YQWSRRMGGEVIGWFAGWFMII-AQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTT-VI  158 (475)
T ss_pred             HHHHHHHcCccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHH-HH
Confidence            9999999999999999999998 555556655555554443211        11121 1 12444555555555555 67


Q ss_pred             hhhcCCCCchhHHHHHHHH
Q psy9206         167 KPFFPDSELPDRAVLLLAA  185 (190)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~  185 (190)
                      |.+..  +..+++|.+.+.
T Consensus       159 n~~g~--k~~~~i~~~~~~  175 (475)
T TIGR03428       159 NCIGV--EWMSRVNTIGVT  175 (475)
T ss_pred             HHhhh--hHHHHHHHHHHH
Confidence            77643  445777665543

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.86  E-value=9.8e-21  Score=162.74  Aligned_cols=118  Identities=18%  Similarity=0.284  Sum_probs=106.8

Q ss_pred             cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206          22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  101 (190)
Q Consensus        22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~  101 (190)
                      +++++||+++.+|+..++++.++|+|+|..++.....+|+ + .+++|+++++..++++++++|+++++|.+||+|+|++
T Consensus         6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~-~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~   83 (456)
T PRK10238          6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-G-IILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAY   83 (456)
T ss_pred             cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            3346999999999999999999999999999999999886 4 7889999999999999999999999999999999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206         102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD  143 (190)
Q Consensus       102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  143 (190)
                      +.+||..||++||.+|+ .+....+++...+++++.. ++|+
T Consensus        84 ~~~g~~~gf~~Gw~~~~-~~~~~~~~~~~~~~~~~~~-~~p~  123 (456)
T PRK10238         84 KYWGSFAGFASGWNYWV-LYVLVAMAELTAVGKYIQF-WYPE  123 (456)
T ss_pred             HHcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCc
Confidence            99999999999999999 5667778888888888874 5553

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.86  E-value=1.3e-20  Score=162.48  Aligned_cols=116  Identities=19%  Similarity=0.357  Sum_probs=102.2

Q ss_pred             cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206          24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  103 (190)
Q Consensus        24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~  103 (190)
                      +++||+++.+++.++++|.++|+|+|..++.++..+|+.+ .+++|++++++.++++++++||++++|++||.|.|+++.
T Consensus        10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~-~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~   88 (471)
T PRK11387         10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAG-TLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY   88 (471)
T ss_pred             hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence            4699999999999999999999999999999998888754 678899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCC
Q psy9206         104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP  142 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~  142 (190)
                      +||..||.+||.+|+ .+....++.....+.++.. ++|
T Consensus        89 ~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~p  125 (471)
T PRK11387         89 LGPATGYTVAWLYWL-TWTVALGSSLTAAGFCMQY-WFP  125 (471)
T ss_pred             cChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-ccC
Confidence            999999999999998 5656666666666655543 445

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.86  E-value=3e-20  Score=159.45  Aligned_cols=150  Identities=15%  Similarity=0.211  Sum_probs=120.1

Q ss_pred             ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhH
Q psy9206          21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI  100 (190)
Q Consensus        21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~  100 (190)
                      +.+.++||+++.+|+.+++++.++|+|+|..++.....+|+.  .+++|++++++.++++++++|+++++|++||+|.|+
T Consensus         5 ~~~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~--~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~   82 (452)
T TIGR01773         5 QSGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA--ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYA   82 (452)
T ss_pred             cchHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            335569999999999999999999999999999999998874  567999999999999999999999999999999999


Q ss_pred             HHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHH
Q psy9206         101 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAV  180 (190)
Q Consensus       101 ~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  180 (190)
                      ++.+||+.||++||.+|+ .+....+++....++++.. ++|+  .+.+   .+..+++++++ .+|.+..|  ..++.|
T Consensus        83 ~~~~g~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~l~~-~~~~--~~~~---~~~~~~~~~~~-~~n~~gv~--~~~~~~  152 (452)
T TIGR01773        83 DDAIGRWAGFTIGWLYWW-FWVLVIPLEAIAAAGILQY-WFPD--IPLW---LFSLILTIVLT-LTNLYSVK--SYGEFE  152 (452)
T ss_pred             HHHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCc--CcHH---HHHHHHHHHHH-HHHHHhcc--hhhHHH
Confidence            999999999999999999 6767888888888888875 5554  2333   23333333333 55665433  334444


Q ss_pred             HH
Q psy9206         181 LL  182 (190)
Q Consensus       181 ~~  182 (190)
                      ..
T Consensus       153 ~~  154 (452)
T TIGR01773       153 FW  154 (452)
T ss_pred             HH
Confidence            43

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10746 putative transport protein YifK; Provisional

Probab=99.85  E-value=3.7e-20  Score=159.37  Aligned_cols=118  Identities=18%  Similarity=0.238  Sum_probs=106.8

Q ss_pred             cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206          22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  101 (190)
Q Consensus        22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~  101 (190)
                      .++++||+++.+|+..+++|.++|+|+|..++..+..+|+.  .+++|++++++.++++.+++||++++|++||.|+|++
T Consensus         4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~--~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~   81 (461)
T PRK10746          4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS--VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAH   81 (461)
T ss_pred             CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            45679999999999999999999999999999999998873  7789999999999999999999999999999999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206         102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD  143 (190)
Q Consensus       102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  143 (190)
                      |.+||..||.+||.+|+ .+....+.+....+.++.. ++|.
T Consensus        82 ~~~g~~~Gf~~gw~~~~-~~~~~~~~~~~a~~~~l~~-~~p~  121 (461)
T PRK10746         82 RYMSPFFGYLTAWSYWF-MWMAVGISEITAIGVYVQF-WFPE  121 (461)
T ss_pred             HHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-ccCC
Confidence            99999999999999999 5666777777788888875 6564

>PRK10836 lysine transporter; Provisional

Probab=99.85  E-value=6.3e-20  Score=159.00  Aligned_cols=117  Identities=21%  Similarity=0.292  Sum_probs=100.3

Q ss_pred             cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206          24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  103 (190)
Q Consensus        24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~  103 (190)
                      +++||+++.++++++++|.++|+|+|..++..+..+|+.+ .+++|++++++.++++++++|+++++|++||.|+|+++.
T Consensus        11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~-~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~   89 (489)
T PRK10836         11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGG-ALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNY   89 (489)
T ss_pred             ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence            5689999999999999999999999999999999988743 788999999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206         104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD  143 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  143 (190)
                      +||..||.+||.+|+ .++...+.+.... .++.+.++|+
T Consensus        90 ~g~~~gf~~Gw~~~~-~~~~~~a~~~~a~-~~~~~~~~~~  127 (489)
T PRK10836         90 VEEGFGFALGWNYWY-NWAVTIAVDLVAA-QLVMSWWFPD  127 (489)
T ss_pred             cChHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhhcCCC
Confidence            999999999999998 5655555443333 3333335453

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.85  E-value=8e-20  Score=156.57  Aligned_cols=156  Identities=24%  Similarity=0.289  Sum_probs=121.7

Q ss_pred             ccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHH
Q psy9206          23 KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  102 (190)
Q Consensus        23 ~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~  102 (190)
                      ++++||++++++.++++++.++|+|++..++......|+++..+++|++++++.++.+++++|+++++|++||+|.|+++
T Consensus         3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~   82 (445)
T PRK11357          3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN   82 (445)
T ss_pred             cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence            46799999999999999999999999999988887778765577889999999999999999999999999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHH
Q psy9206         103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLL  182 (190)
Q Consensus       103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  182 (190)
                      .+||..||+++|..++.......+..+..+++++.. +.|.   +......+..+++.+++ .+|...  .+..++.|.+
T Consensus        83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~-~~~~---~~~~~~~~~~~~~~~~~-~ln~~g--v~~~~~v~~~  155 (445)
T PRK11357         83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGF-LTPI---DPLLGKFIAAGLIIAFM-LLHLRS--VEGGAAFQTL  155 (445)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC---chHHHHHHHHHHHHHHH-HHHHhh--hhHHHHHHHH
Confidence            999999999999865434455677778888888764 4332   12233444444444444 455553  4555777666


Q ss_pred             HHH
Q psy9206         183 LAA  185 (190)
Q Consensus       183 ~~~  185 (190)
                      ++.
T Consensus       156 ~~~  158 (445)
T PRK11357        156 ITI  158 (445)
T ss_pred             HHH
Confidence            553

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.84  E-value=7.9e-20  Score=156.63  Aligned_cols=153  Identities=19%  Similarity=0.255  Sum_probs=115.8

Q ss_pred             cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206          24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  103 (190)
Q Consensus        24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~  103 (190)
                      ++++|++++++.+++.++.++|+|+|..++..... |+  +.+++|+++++..++.+++++|+++++|++||+|+|+++.
T Consensus         4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~-g~--~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~   80 (445)
T PRK10644          4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAST-GG--IAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC   80 (445)
T ss_pred             CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence            34789999999999999999999999998886554 42  3678899999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHH
Q psy9206         104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLL  183 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  183 (190)
                      +||+.||++||.+|+..+ ............+... ++|..+ +.+...++..+++++++ .+|.+.  .+..++.|.++
T Consensus        81 ~g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~-~ln~~g--vk~~~~i~~i~  154 (445)
T PRK10644         81 FGPFLGYQTNVLYWLACW-IGNIAMVVIGVGYLSY-FFPILK-DPLVLTITCVVVLWIFV-LLNIVG--PKMITRVQAVA  154 (445)
T ss_pred             cCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HhcccC-CcHHHHHHHHHHHHHHH-HHHHhc--hHHHHHHHHHH
Confidence            999999999999998433 3444444445566654 555332 33444455555555555 666664  34557776665


Q ss_pred             HH
Q psy9206         184 AA  185 (190)
Q Consensus       184 ~~  185 (190)
                      +.
T Consensus       155 ~~  156 (445)
T PRK10644        155 TV  156 (445)
T ss_pred             HH
Confidence            54

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.84  E-value=1.3e-19  Score=155.71  Aligned_cols=117  Identities=17%  Similarity=0.271  Sum_probs=104.3

Q ss_pred             ccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHH
Q psy9206          23 KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  102 (190)
Q Consensus        23 ~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~  102 (190)
                      ++++||+++.++++++++|.++|+|++..++.....+|+.  .+++|+++++..++++++++|+++++|++||.|.|+++
T Consensus         4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~--~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~   81 (457)
T PRK10580          4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS--VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE   81 (457)
T ss_pred             CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            4679999999999999999999999999999988888864  68899999999999999999999999999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206         103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD  143 (190)
Q Consensus       103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  143 (190)
                      .+||..||++||.+++ .+....+.+...++.++.. ++|.
T Consensus        82 ~~G~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~  120 (457)
T PRK10580         82 NLGPLAGYITGWTYCF-EILIVAIADVTAFGIYMGV-WFPT  120 (457)
T ss_pred             HcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hCCC
Confidence            9999999999999998 5656666667777877764 5553

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.83  E-value=1.4e-19  Score=158.92  Aligned_cols=158  Identities=23%  Similarity=0.376  Sum_probs=120.6

Q ss_pred             ccccccccchhHHHHHHhhhhhcchhccchHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206          23 KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLA-ETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  101 (190)
Q Consensus        23 ~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~-~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~  101 (190)
                      +++++|+++.+|+++++++.++|+|+|..++.... .+|+.  .+++|+++++..++.+++++|+++++|++||.|+|++
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~--~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~  100 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA--IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSY  100 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHH
Confidence            45799999999999999999999999999888764 45653  6778999999999999999999999999999999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCC----------CCCCcH--HHHHHHHHHHHHHHHhhhhhh
Q psy9206         102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP----------DSELPD--RAVLLLAAACLCKNGNAIKPF  169 (190)
Q Consensus       102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~~~l~~~~~~~~~~  169 (190)
                      +.+|+++||++||.+++ .+....+..+...+.|+...+..          ..+.+.  ....+++.+++++++ .+|.+
T Consensus       101 ~~~G~~~gfi~GW~~~l-~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~-~ln~~  178 (557)
T TIGR00906       101 VTVGELWAFITGWNLIL-EYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLA-VLLSF  178 (557)
T ss_pred             HHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHH-HHHHh
Confidence            99999999999999998 56677888888888877653210          000010  112234444444444 55665


Q ss_pred             cCCCCchhHHHHHHHHH
Q psy9206         170 FPDSELPDRAVLLLAAA  186 (190)
Q Consensus       170 ~~~~~~~~~~~~~~~~~  186 (190)
                        ..+..+++|.+++.+
T Consensus       179 --Gik~s~~v~~i~~~i  193 (557)
T TIGR00906       179 --GVKESAWVNKIFTAI  193 (557)
T ss_pred             --chhHHHHHHHHHHHH
Confidence              345667777776654

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.83  E-value=1e-19  Score=157.31  Aligned_cols=151  Identities=18%  Similarity=0.171  Sum_probs=118.1

Q ss_pred             CCccccccccccchhHHHHHHhhhhh-cchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchH
Q psy9206          19 GSPIKVQMKRKITLLGGVSIIVGCII-GSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDY   97 (190)
Q Consensus        19 ~~~~~~~l~r~l~~~~~~~~~~~~~i-g~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y   97 (190)
                      +.+++|++||+++.+++++++++.+. +.|++.........+|+.+ .+++|++++++.++++++++||++++|++||+|
T Consensus         3 ~~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~-~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y   81 (482)
T TIGR00907         3 ALGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMS-IVWGWIIAGAGSICIALSLAELSSAYPTSGGQY   81 (482)
T ss_pred             ccCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc-hhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHH
Confidence            45788999999999999999999762 3677777666666777654 678999999999999999999999999999999


Q ss_pred             hhHHHHhC----chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh---CCC--CCCcHHHHHHHHHHHHHHHHhhhhh
Q psy9206          98 AYILVAFG----ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF---FPD--SELPDRAVLLLAAACLCKNGNAIKP  168 (190)
Q Consensus        98 ~~~~~~~g----~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~l~~~~~~~~~  168 (190)
                      +|+++.+|    +..+|++||.+++ ++....++.....++++...+   .+.  +.++.|....+..+++++++ .+|.
T Consensus        82 ~~~~~~~g~~~g~~~~f~~gW~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~in~  159 (482)
T TIGR00907        82 FWSAKLAPPRQMPFASWMTGWFNLA-GQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHA-LINS  159 (482)
T ss_pred             HHHHHhcccccccceeHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHH-HHHH
Confidence            99999876    6889999999998 666777778888887776532   222  33445555556665666555 6777


Q ss_pred             hcCC
Q psy9206         169 FFPD  172 (190)
Q Consensus       169 ~~~~  172 (190)
                      +..|
T Consensus       160 ~g~k  163 (482)
T TIGR00907       160 LPTK  163 (482)
T ss_pred             hhHh
Confidence            6544

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.83  E-value=1.3e-19  Score=156.50  Aligned_cols=156  Identities=22%  Similarity=0.232  Sum_probs=118.4

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CcchHhhHHHH
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAYILVA  103 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~-~GG~y~~~~~~  103 (190)
                      +++|++++++..++.++.++|+|++..++.....+|+. ..+++|+++++..++.+++++|+++++|+ +||.|+|+++.
T Consensus         4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~-~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~   82 (473)
T TIGR00905         4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPG-AVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREG   82 (473)
T ss_pred             ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhH
Confidence            35789999999999999999999999998877665543 36788999999999999999999999999 99999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCC-CcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHH
Q psy9206         104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSE-LPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLL  182 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  182 (190)
                      +||+.||++||.+|+ .+.......+..+.+++.. ++|... .+.+...+....++++++ .+|...  .+..+|.|.+
T Consensus        83 ~G~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~-~ln~~G--i~~~~~i~~~  157 (473)
T TIGR00905        83 FGPYIGFMSGWGYWL-SAWIGNVAYAVLLFSALGY-FFPLFGSGNPVPSILGASVLLWVFT-FLVLRG--VRQAAFINTI  157 (473)
T ss_pred             cccccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhhhhcCCCcHHHHHHHHHHHHHHH-HHHHhC--HHHHHHHHHH
Confidence            999999999999997 4445555566666667664 555322 123333444444444444 566654  4556777777


Q ss_pred             HHHH
Q psy9206         183 LAAA  186 (190)
Q Consensus       183 ~~~~  186 (190)
                      .+.+
T Consensus       158 ~~~~  161 (473)
T TIGR00905       158 TTIA  161 (473)
T ss_pred             HHHH
Confidence            6644

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10655 potE putrescine transporter; Provisional

Probab=99.83  E-value=2.5e-19  Score=153.17  Aligned_cols=151  Identities=19%  Similarity=0.230  Sum_probs=116.1

Q ss_pred             cccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206          26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG  105 (190)
Q Consensus        26 l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g  105 (190)
                      +||++++++.+++.++.++|+|++..++... ..|+.  .+++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~~G~~--~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G   80 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-QVGTI--SILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFG   80 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-HhhHH--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcC
Confidence            5788999999999999999999999987754 55653  67789999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHH
Q psy9206         106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAA  185 (190)
Q Consensus       106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (190)
                      |+.||++||.+|+. +.......+.....|+.. ++|. +.+.+...++..+++++++ .+|...  .+..++.|.+.+.
T Consensus        81 ~~~gf~~gw~~~~~-~~~~~~~~a~~~~~y~~~-~~~~-~~~~~~~~~~~~~~l~~~~-~ln~~g--~~~~~~i~~i~~~  154 (438)
T PRK10655         81 KSGNFMANYTYGVS-LLIANVAIAISAVGYGTE-LFGA-TLSPVQICLATIGVLWLCT-VANFGG--ARITGQISSVTVW  154 (438)
T ss_pred             cchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hccc-ccchHHHHHHHHHHHHHHH-HHHHhC--HHHHHHHHHHHHH
Confidence            99999999999983 434444445666677765 4453 3334444455555555555 566664  3456777765543

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.82  E-value=2.7e-19  Score=152.59  Aligned_cols=147  Identities=18%  Similarity=0.227  Sum_probs=127.2

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHh
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  104 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~  104 (190)
                      ++||+|+.+|+.++++|..||+|.|..++..+.++||.| .+++|++.+++..++..++.||++.+|.+|+...|+.|..
T Consensus        41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g-~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv  119 (541)
T COG0833          41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAG-LLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV  119 (541)
T ss_pred             hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence            599999999999999999999999999999999999876 8889999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCc
Q psy9206         105 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSEL  175 (190)
Q Consensus       105 g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  175 (190)
                      +|-+||..||+||+ .|....+.+..+.+..++. ++|+. .+.+.+..+..+++++++.+-.+.+.+.||
T Consensus       120 dpa~GFa~gWnYw~-~w~v~~~~El~aa~~vi~y-W~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Ef  187 (541)
T COG0833         120 DPAFGFALGWNYWL-NWAVTLPLELTAASLVIQY-WFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETEF  187 (541)
T ss_pred             CchHHHHHHHHHHH-HHHHHhhHHHHHHHHhhhh-hcCCC-CChHHHHHHHHHHHHHHHHhcccccceehH
Confidence            99999999999999 7889999998888887774 66654 355555555555566666556666666664

>TIGR00908 2A0305 ethanolamine permease

Probab=99.81  E-value=6e-19  Score=151.00  Aligned_cols=152  Identities=21%  Similarity=0.178  Sum_probs=117.1

Q ss_pred             cccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHH
Q psy9206          22 IKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYIL  101 (190)
Q Consensus        22 ~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~  101 (190)
                      +|+++||++++++.++++++.++| |.+...+.....+|+.+ .+++|++++++.++++++++|+++++|++||.|+|++
T Consensus         1 ~~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~~G~~~-~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~   78 (442)
T TIGR00908         1 QHRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQGGWGG-FVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFAR   78 (442)
T ss_pred             CCchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            367799999999999999999987 76666555566667643 6778999999999999999999999999999999999


Q ss_pred             HHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHH
Q psy9206         102 VAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVL  181 (190)
Q Consensus       102 ~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  181 (190)
                      +.+||+.||++||.+|+ .+....+..+..+++++.. ++|..+  .+.   ...+++++++ .+|.+.  .+..++.|.
T Consensus        79 ~~~G~~~gf~~gw~~~~-~~~~~~~~~a~~~~~~l~~-~~p~~~--~~~---~~~~~~~~~~-~ln~~g--~~~~~~i~~  148 (442)
T TIGR00908        79 RAFGPWGGFLAGTAILI-EFAFAPPAIACFIGAYCES-LFPVGP--GWL---AALVFYIVFI-GINILG--VGEAAKLEF  148 (442)
T ss_pred             HHhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhccCc--hhH---HHHHHHHHHH-HHHHHH--HHHHHhHHH
Confidence            99999999999999998 6778888899999999886 555432  222   2233333333 455553  344566665


Q ss_pred             HHHH
Q psy9206         182 LLAA  185 (190)
Q Consensus       182 ~~~~  185 (190)
                      +++.
T Consensus       149 ~~~~  152 (442)
T TIGR00908       149 VVTA  152 (442)
T ss_pred             HHHH
Confidence            5543

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.81  E-value=7.6e-19  Score=150.20  Aligned_cols=150  Identities=21%  Similarity=0.212  Sum_probs=114.0

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHh
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  104 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~  104 (190)
                      +.+|++++++.+++.+|.++|+|+|..++... ..|+.  .+++|+++++..++.+++++||++++|++||.|+|+++ +
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~~G~~--~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~   77 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-SIGSI--AIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-I   77 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-HhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-H
Confidence            35788999999999999999999999988864 45643  67889999999999999999999999999999999999 8


Q ss_pred             CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206         105 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA  184 (190)
Q Consensus       105 g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  184 (190)
                      ||+.||.++|.+|...| ............|+.. ++|..+++ ....++...++++++ .+|....|  ..++.|.+.+
T Consensus        78 g~~~gf~~gw~~~~~~~-~~~~~~~~~~~~y~~~-~~p~~~~~-~~~~~~~~~i~~~~~-~ln~~gvk--~~~~i~~i~~  151 (435)
T PRK10435         78 SPAFGFQTGVLYYHANW-IGNLAIGITAVSYLST-FFPVLNDP-IPAGIACIAIVWVFT-FVNMLGGT--WVSRLTTIGL  151 (435)
T ss_pred             CcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HccccCCh-HHHHHHHHHHHHHHH-HHHHHhHH--HHHHHHHHHH
Confidence            99999999999997455 3444555666677775 56654332 333344445555554 66666543  4566665444

>KOG1286|consensus

Probab=99.81  E-value=1.4e-19  Score=157.52  Aligned_cols=162  Identities=20%  Similarity=0.213  Sum_probs=133.9

Q ss_pred             ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CcchHhh
Q psy9206          21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-SGGDYAY   99 (190)
Q Consensus        21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~-~GG~y~~   99 (190)
                      ++++++||+++.+|+.++++|.++|+|++...+..+.+.|+++ .+++++++++..++.+++++|++..+|. +|+.|+|
T Consensus        23 ~~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s-~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~y  101 (554)
T KOG1286|consen   23 EGETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPS-LLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTY  101 (554)
T ss_pred             CccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChh-HHHHHHHHHHHHHHHHHHHHHHheecccccccceee
Confidence            3346899999999999999999999999999999999999875 7778999999999999999999999999 5999999


Q ss_pred             HHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhC---------CCCCCcHHHHHHHHHHHHHHHHhhhhhhc
Q psy9206         100 ILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFF---------PDSELPDRAVLLLAAACLCKNGNAIKPFF  170 (190)
Q Consensus       100 ~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  170 (190)
                      +++..|+.++|.+||++++ .|....++++.+.+.++.. +.         +..++..|....++..+++.++  ....+
T Consensus       102 a~~~i~e~~aF~~gWny~l-~y~i~~a~e~~a~s~~~~~-w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~--gv~~~  177 (554)
T KOG1286|consen  102 AYRFVGESLAFAIGWNYLL-EYVIGLAAEARAWSSYLDY-WTGASLIGILVDTVNPGGWIPDFLAFILIINLF--GVLAY  177 (554)
T ss_pred             eeeeeCcHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHH-HhccccccccccCCCCCccHHHHHHHHHHHHHH--HHhhc
Confidence            9999999999999999999 6889999999999999996 43         3444455555555555544444  44555


Q ss_pred             CCCCchhHHHHHHHHHh
Q psy9206         171 PDSELPDRAVLLLAAAC  187 (190)
Q Consensus       171 ~~~~~~~~~~~~~~~~~  187 (190)
                      ...|+.....-+++.+.
T Consensus       178 ge~ef~~~~~kvl~~v~  194 (554)
T KOG1286|consen  178 GEVEFSLAFNKILTAVG  194 (554)
T ss_pred             cceeehHHHHHHHHHHH
Confidence            66777666666655543

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.80  E-value=2.7e-18  Score=148.16  Aligned_cols=151  Identities=15%  Similarity=0.193  Sum_probs=118.6

Q ss_pred             ccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHH
Q psy9206          23 KVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  102 (190)
Q Consensus        23 ~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~  102 (190)
                      ++++||+++.++...+++|.++|+|+|..++..+..+|+ + .+++|++++++.++++.+++|++++.|..|+.|.|+++
T Consensus        15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~-~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~   92 (469)
T PRK11049         15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-S-IIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASD   92 (469)
T ss_pred             chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            356999999999999999999999999999999999887 3 67899999999999999999999999999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHH
Q psy9206         103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLL  182 (190)
Q Consensus       103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  182 (190)
                      .+||..||++||.+|+ .+....+.+...++.++.. ++|+.  +.+..   +.+++++++ .+|.+.  .+..++.|.+
T Consensus        93 ~~g~~~gf~~gW~~~~-~~~~~~~a~~~a~~~~~~~-~~p~~--~~~~~---~~~~~~~~~-~iN~~g--~~~~~~i~~~  162 (469)
T PRK11049         93 LLGPWAGYFTGWTYWF-CWVVTGIADVVAITAYAQF-WFPDL--SDWVA---SLAVVLLLL-SLNLAT--VKMFGEMEFW  162 (469)
T ss_pred             HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCC--cHHHH---HHHHHHHHH-HHHHHh--HHHHHHHHHH
Confidence            9999999999999998 4545555666677777774 55643  23322   222333333 566664  3455666655


Q ss_pred             HHH
Q psy9206         183 LAA  185 (190)
Q Consensus       183 ~~~  185 (190)
                      .+.
T Consensus       163 ~~~  165 (469)
T PRK11049        163 FAM  165 (469)
T ss_pred             HHH
Confidence            443

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.80  E-value=2.9e-18  Score=143.72  Aligned_cols=148  Identities=19%  Similarity=0.240  Sum_probs=132.8

Q ss_pred             ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhH
Q psy9206          21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYI  100 (190)
Q Consensus        21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~  100 (190)
                      ++++++||.++.+|+..+++|..||+|.|...+..+..+||.  .+++++++++..+++.-.+.||...-|++|+.-+|+
T Consensus         6 ~~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS--vlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a   83 (462)
T COG1113           6 NEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS--VLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYA   83 (462)
T ss_pred             ccchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHH
Confidence            455679999999999999999999999999999999999976  677899999999999999999999999999999999


Q ss_pred             HHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCC
Q psy9206         101 LVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSE  174 (190)
Q Consensus       101 ~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  174 (190)
                      ++.+||+.||++||.||+ .|....-++..+.+.|++. ++|+.  |.|...+....++...+..-.+.+.+.|
T Consensus        84 ~~~lG~~Agf~tgW~YW~-~wv~v~~ae~tAi~~y~~~-WfP~v--P~Wv~al~~~~l~~~~NL~sVk~FGE~E  153 (462)
T COG1113          84 RKYLGPWAGFLTGWTYWF-FWVLVGIAELTAIGIYLQF-WFPDV--PQWVFALAAVVLLLAVNLISVKVFGELE  153 (462)
T ss_pred             HHHhcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 7888999999999999996 88876  6777777777777777756677777776

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.79  E-value=3e-18  Score=147.75  Aligned_cols=153  Identities=22%  Similarity=0.259  Sum_probs=114.1

Q ss_pred             cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-cchHhhHHHHhCc
Q psy9206          28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS-GGDYAYILVAFGE  106 (190)
Q Consensus        28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~-GG~y~~~~~~~g~  106 (190)
                      |++++++.+++.++.++|+|+|..++.....+|+. ..+++|++++++.++++++++|+++++|++ ||.|+|+++.+||
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~-~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~   79 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAG-AVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP   79 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence            68999999999999999999999999988887753 367789999999999999999999999996 5999999999999


Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCC-cHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHH
Q psy9206         107 LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSEL-PDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAA  185 (190)
Q Consensus       107 ~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (190)
                      +.||+.||.+|+..+ ............++.. ++|.... +..........++++++ .+|..  ..+..++.|.+++.
T Consensus        80 ~~gf~~gw~~w~~~~-~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~-~ln~~--Gv~~~~~i~~i~~~  154 (468)
T TIGR03810        80 FMGFISAWGYWLSAW-LGNVAYATLLFSTLGY-FFPIFGGGNNPPSIIGASVLLWCVH-FLVLR--GVEGAAFINTITTI  154 (468)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hcccccCCCcHHHHHHHHHHHHHHH-HHHHh--CHHHHHHHHHHHHH
Confidence            999999999998433 3444444444555553 5554322 12233344444444444 55554  34456777776654


Q ss_pred             H
Q psy9206         186 A  186 (190)
Q Consensus       186 ~  186 (190)
                      +
T Consensus       155 ~  155 (468)
T TIGR03810       155 A  155 (468)
T ss_pred             H
Confidence            3

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK11021 putative transporter; Provisional

Probab=99.79  E-value=5.4e-18  Score=143.87  Aligned_cols=147  Identities=20%  Similarity=0.263  Sum_probs=111.4

Q ss_pred             cchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhH
Q psy9206          30 ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPA  109 (190)
Q Consensus        30 l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~  109 (190)
                      +++++..++.++.|+|+|+|..++.+...+|+.  .+++|+++++..++.+++++|+++++|++||.|+|+++.+||+.|
T Consensus         1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~--~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~g   78 (410)
T PRK11021          1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNN--SLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLG   78 (410)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCch--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhH
Confidence            578999999999999999999999999998864  788999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHH
Q psy9206         110 FLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAA  186 (190)
Q Consensus       110 ~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (190)
                      |++||.++. .+....+.......+++.. +++..+   +....+..+++++++ .+|...  .+..++.|.+++.+
T Consensus        79 f~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-~ln~~G--v~~~~~~~~~~~~~  147 (410)
T PRK11021         79 RVTGWLFLS-VIPVGLPAALQIAAGFGQA-LFGWSS---WQLLLAELLTLALLW-LLNLRG--ASSSANLQTVIALL  147 (410)
T ss_pred             HHHHHHHHH-HHHhhHHHHHHHHHHHHHH-HcCCCC---chHHHHHHHHHHHHH-HHHHhh--HHHHHHHHHHHHHH
Confidence            999999997 4444444444445566654 444322   222333344444444 555553  44557776665543

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.78  E-value=9.9e-18  Score=144.80  Aligned_cols=114  Identities=17%  Similarity=0.153  Sum_probs=100.5

Q ss_pred             ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-cchHhhHHHHhC
Q psy9206          27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRS-GGDYAYILVAFG  105 (190)
Q Consensus        27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~-GG~y~~~~~~~g  105 (190)
                      ||+++.+++.++++|.++|+|++..++..+..+|+.+ .+++|++++++.++++++++|+++++|++ ||.|.|+++.+|
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~-~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g   79 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAG-LLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD   79 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence            5889999999999999999999999999999888653 67789999999999999999999999964 567789999999


Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC
Q psy9206         106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD  143 (190)
Q Consensus       106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  143 (190)
                      |..||.+||.+|+ .+....+++....+.++.. +.+.
T Consensus        80 ~~~gf~~gw~~~~-~~~~~~~~~~~~~~~~~~~-~~~~  115 (478)
T TIGR00913        80 PAFGFAVGWNYWL-QWLIVLPLELVTASMTIQY-WTDK  115 (478)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-cCCC
Confidence            9999999999999 5667788888888888774 4443

>TIGR00909 2A0306 amino acid transporter

Probab=99.76  E-value=2.4e-17  Score=140.47  Aligned_cols=154  Identities=27%  Similarity=0.388  Sum_probs=119.2

Q ss_pred             cccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206          26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG  105 (190)
Q Consensus        26 l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g  105 (190)
                      +||+++.+|.+.+.++.++|+|++..++......|+.  .+++|+++++..++.+++++|+++++|++||.|+|+++.+|
T Consensus         1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~--~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G   78 (429)
T TIGR00909         1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA--VILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMG   78 (429)
T ss_pred             CCccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhC
Confidence            5899999999999999999999999998877776653  56789999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC--CCCcHHHH---------HHHHHHHHHHHHhhhhhhcCCCC
Q psy9206         106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD--SELPDRAV---------LLLAAACLCKNGNAIKPFFPDSE  174 (190)
Q Consensus       106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~  174 (190)
                      |+.||+.+|.+++ .+....+.....+++++.. +.+.  .+.+.+..         .+....++++++ .+|..  +.+
T Consensus        79 ~~~g~~~gw~~~~-~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~~--g~~  153 (429)
T TIGR00909        79 ELTAFIIGWSLWL-EYGVAVAAVAVGWGGYLQE-FLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLT-YILYL--GAK  153 (429)
T ss_pred             cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHccccCchhhhcCCcccccccHHHHHHHHHHH-HHHHh--CcH
Confidence            9999999999998 5667888888888888876 3331  12222111         122333344444 55555  345


Q ss_pred             chhHHHHHHHHH
Q psy9206         175 LPDRAVLLLAAA  186 (190)
Q Consensus       175 ~~~~~~~~~~~~  186 (190)
                      ..+|.|.+.+.+
T Consensus       154 ~~~~~~~v~~~~  165 (429)
T TIGR00909       154 ESGKVNDILVVL  165 (429)
T ss_pred             HHHHHHHHHHHH
Confidence            567777765543

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.72  E-value=5.3e-17  Score=149.41  Aligned_cols=158  Identities=18%  Similarity=0.184  Sum_probs=127.1

Q ss_pred             ccccccchhHHHHHH-hhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhh-cccCcchHhhHHH
Q psy9206          25 QMKRKITLLGGVSII-VGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTC-ISRSGGDYAYILV  102 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~-~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~-~P~~GG~y~~~~~  102 (190)
                      .-+|++++++...+- +++++|+++|..++.+..++|.. .+++.|++++++.++.++|++|+++. +|++||.|.|++|
T Consensus        73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~-~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr  151 (953)
T TIGR00930        73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIG-LSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR  151 (953)
T ss_pred             CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence            346889999999887 99999999999999999999854 47778999999999999999999998 9999999999999


Q ss_pred             HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCC-----CCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchh
Q psy9206         103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS-----ELPDRAVLLLAAACLCKNGNAIKPFFPDSELPD  177 (190)
Q Consensus       103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  177 (190)
                      .+||..|+..||.+++ ....+.+..+.++++++...+ +..     ..+.....+++.+++++++ ++|...  .+..+
T Consensus       152 alGp~~Gf~iG~~~~l-a~~va~A~~~~Gf~eyl~~lf-~~~~~~~~~~~~~~~~iia~i~l~ll~-~In~~G--vk~~a  226 (953)
T TIGR00930       152 SLGPEFGGSIGLIFAF-ANAVAVAMYVVGFAETVLDLL-RENGSKIMVDPINDIRIYGTVTVVVLL-GISFAG--MEWEN  226 (953)
T ss_pred             HhCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh-hhcccccccCccccchHHHHHHHHHHH-HHHHhh--HHHHH
Confidence            9999999999999998 666888999999999998743 221     1111223455555555555 666664  45668


Q ss_pred             HHHHHHHHHhh
Q psy9206         178 RAVLLLAAACL  188 (190)
Q Consensus       178 ~~~~~~~~~~~  188 (190)
                      ++|.+++++.+
T Consensus       227 k~q~vl~vi~l  237 (953)
T TIGR00930       227 KAQVLFLVIVL  237 (953)
T ss_pred             HHHHHHHHHHH
Confidence            88888776643

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.70  E-value=4.1e-16  Score=132.60  Aligned_cols=149  Identities=29%  Similarity=0.457  Sum_probs=116.6

Q ss_pred             cchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhhhhcccCcchHhhHHHHhCchh
Q psy9206          30 ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFGELP  108 (190)
Q Consensus        30 l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~-~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~  108 (190)
                      +++++.+++.++.++|+|++..+  .....|+.  .++.|+++++.. ++.+++++|+++++|++||.|.|+++.+||+.
T Consensus         1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~~G~~--~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~   76 (426)
T PF13520_consen    1 LGLFSAIALVIGSIIGSGIFFSP--AAASAGPS--AILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFW   76 (426)
T ss_dssp             B-HHHHHHHHHHCHHTTTTTTHH--HHTCTGCH--HHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH--HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccc
Confidence            57899999999999999998876  44455543  666788888887 89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHH
Q psy9206         109 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAA  186 (190)
Q Consensus       109 ~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (190)
                      ||+.+|.+++ .+....+.....+.+++...+.++.+++.+...++..+++++.. .+|....  +...+.|..++.+
T Consensus        77 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~g~--~~~~~~~~~~~~~  150 (426)
T PF13520_consen   77 GFIVGWLYWV-AYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFT-LLNLLGI--KLSGKIQNILTVI  150 (426)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHH-HHHHTTH--HHHHHHHHHHHHH
T ss_pred             hhcccceeEE-Eeeccccccccchhhhhhhccccccccccchheeeeecccccce-Eeeechh--hhhhhhhhhhhhh
Confidence            9999999998 56677777888889988875555555556677777776766666 6666643  4446776666544

...

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.70  E-value=4e-16  Score=133.88  Aligned_cols=135  Identities=17%  Similarity=0.216  Sum_probs=103.5

Q ss_pred             HHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHHH
Q psy9206          38 IIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVAL  117 (190)
Q Consensus        38 ~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~~  117 (190)
                      +++|.++|+|+|..++..+..+|+.  .+++|++++++.++.+++++||++++|++||.|+|++|.+||.+||..||.+|
T Consensus         2 ~~ig~~IGsGif~~~g~~~~~aG~~--~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~   79 (446)
T PRK10197          2 LSIAGVIGASLFVGSSVAIAEAGPA--VLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYW   79 (446)
T ss_pred             eeecchhHhHHHHHhHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHH
Confidence            5688999999999999999998863  77899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206         118 LIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA  184 (190)
Q Consensus       118 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  184 (190)
                      + .+....+.+....+.++.. +.|..  +   ...++.+++++++ .+|.+..  +...+.|.+++
T Consensus        80 ~-~~~~~~~~~~~~~~~~~~~-~~~~~--~---~~~~~~~~l~~~~-~lN~~gv--~~~~~i~~~~~  136 (446)
T PRK10197         80 W-FWVLVIPLEANIAAMILHS-WVPGI--P---IWLFSLVITLALT-GSNLLSV--KNYGEFEFWLA  136 (446)
T ss_pred             H-HHHHHHHHHHHHHHHHHHh-ccccC--c---HHHHHHHHHHHHH-HHHHHhh--HHHhhhHHHHH
Confidence            8 5666777777666666553 43422  1   2234444444444 5666533  33455555444

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.63  E-value=9.2e-15  Score=125.26  Aligned_cols=158  Identities=27%  Similarity=0.429  Sum_probs=122.7

Q ss_pred             ccccccccccchhH-HHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhh
Q psy9206          21 PIKVQMKRKITLLG-GVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY   99 (190)
Q Consensus        21 ~~~~~l~r~l~~~~-~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~   99 (190)
                      .++++++|+++.++ ...+..+.++|.|++..++......  +. ..+.|+++++...+.+++++|+++.+|++||.|.|
T Consensus         5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~--~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~   81 (466)
T COG0531           5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA--PA-AILAWLIAGIIILFLALSYAELSSAIPSAGGAYAY   81 (466)
T ss_pred             ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc--hH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeee
Confidence            34566789999999 8899999999999998877766555  22 44459999999999999999999999999999999


Q ss_pred             HHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCC---CCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCch
Q psy9206         100 ILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPD---SELPDRAVLLLAAACLCKNGNAIKPFFPDSELP  176 (190)
Q Consensus       100 ~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  176 (190)
                      +++.+||+.+|+++|.+++ .+....++.+...++++.. +.+.   ...+.+....++.+.+++.+ .+|...  .+..
T Consensus        82 ~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ln~~G--~~~~  156 (466)
T COG0531          82 AKRALGPRLGFLAGWLYLL-AYVIALAAIAIGAASYLSY-LFPGPGLLSIGPLLIILIALALIALLT-LLNLRG--IKAS  156 (466)
T ss_pred             hhhhcCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hcCcchhhcCCchHHHHHHHHHHHHHH-HHHHhh--HHHH
Confidence            9999999999999999999 5668888888888887775 5553   22222566666666666666 666664  3444


Q ss_pred             hHHHHHHHHH
Q psy9206         177 DRAVLLLAAA  186 (190)
Q Consensus       177 ~~~~~~~~~~  186 (190)
                      ++.|...+.+
T Consensus       157 ~~~~~~~~~~  166 (466)
T COG0531         157 AKINSIITIL  166 (466)
T ss_pred             HHHHHHHHHH
Confidence            6666665543

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.57  E-value=1.6e-13  Score=119.29  Aligned_cols=88  Identities=23%  Similarity=0.335  Sum_probs=71.0

Q ss_pred             cccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHH-HHHHHHHHHHhhhhccc-CcchHhhHHHH
Q psy9206          26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLL-STIGALCYAELGTCISR-SGGDYAYILVA  103 (190)
Q Consensus        26 l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~-~~~~~~~~aEl~s~~P~-~GG~y~~~~~~  103 (190)
                      +||+++++++..+.++.++|.+..  + ......|+.  .++.|+++++. .++.+++++|+++++|+ +||+|+|+++.
T Consensus         5 ~~~~l~~~~l~~~~~~~vig~~~~--~-~~~~~~G~~--~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~   79 (496)
T PRK15238          5 TKKKLSLIGLILMIFTSVFGFANS--P-RAFYLMGYS--AIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKS   79 (496)
T ss_pred             ccCeeeHHHHHHHHHHHHHhCCch--H-HHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence            478899999999999999886532  2 224455543  45556666655 57899999999999997 89999999999


Q ss_pred             hCchhHHHHHHHHHH
Q psy9206         104 FGELPAFLRLWVALL  118 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~  118 (190)
                      +||+.||+.+|.+|.
T Consensus        80 ~G~~~gf~~~w~~~~   94 (496)
T PRK15238         80 VGPKFAFIGTFMWFA   94 (496)
T ss_pred             cCchHHHHHHHHHHH
Confidence            999999999998665

>PHA02764 hypothetical protein; Provisional

Probab=99.50  E-value=1e-13  Score=111.39  Aligned_cols=105  Identities=18%  Similarity=0.041  Sum_probs=81.5

Q ss_pred             CccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhh
Q psy9206          20 SPIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY   99 (190)
Q Consensus        20 ~~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~   99 (190)
                      .++...|-|+.+.+|.+...++.+.+ |.-...........++...+.+|+++++..++.+++++|+++++|++||.|+|
T Consensus         4 vReSSGLVREvs~lDAF~~Nl~~m~~-Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVY   82 (399)
T PHA02764          4 ERKSSGIIKSFNILDIFSINLLYMGI-LSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAY   82 (399)
T ss_pred             chhcCCceeeccHHHHHHHHHHhhcc-chhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEE
Confidence            35667899999999999999998832 22111111122233334467789999999999999999999999999999999


Q ss_pred             HHHHhCchhHHHHHHHHHHHHHhHHHH
Q psy9206         100 ILVAFGELPAFLRLWVALLIMRPTTQA  126 (190)
Q Consensus       100 ~~~~~g~~~~~~~gw~~~~~~~~~~~a  126 (190)
                      .+|++||+.|++.||..|. .+....+
T Consensus        83 ISRAFGP~~GFLvG~a~WL-tl~~G~P  108 (399)
T PHA02764         83 IRTAFSSKFYTIFGISLWL-TYVLSQP  108 (399)
T ss_pred             hHHhhCccHHHHHHHHHHH-HHHhhcc
Confidence            9999999999999999987 3434433

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.47  E-value=1.8e-12  Score=112.12  Aligned_cols=86  Identities=20%  Similarity=0.269  Sum_probs=69.9

Q ss_pred             cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhhhhcccCcchHhhHHHHhCc
Q psy9206          28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGTCISRSGGDYAYILVAFGE  106 (190)
Q Consensus        28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~-~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~  106 (190)
                      ||++.+++..+.+..+.+  +...+  .....|+.  .++.|++++++. ++.+++++||++++|++||.|.|+++.+||
T Consensus         1 ~~~~~~~l~~~~~~~v~~--~~~~~--~~a~~G~~--~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~   74 (474)
T TIGR03813         1 KKLTVVTLAIMNITAVVS--LRGLP--AEAEYGLS--AAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGA   74 (474)
T ss_pred             CcccHHHHHHHHHHHHHH--hhcch--HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcCh
Confidence            469999999999887753  33322  23344532  566799999876 479999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHH
Q psy9206         107 LPAFLRLWVALLI  119 (190)
Q Consensus       107 ~~~~~~gw~~~~~  119 (190)
                      ++||+.+|.+|..
T Consensus        75 ~~gf~~gw~~w~~   87 (474)
T TIGR03813        75 RWGFLAIFMLWAQ   87 (474)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999999983

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.45  E-value=2e-12  Score=112.82  Aligned_cols=142  Identities=18%  Similarity=0.248  Sum_probs=92.6

Q ss_pred             ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHH-HHHHHHH-HHHHHHHHHHhhhhcc-cCcchHhhHHHH
Q psy9206          27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLL-STIGALCYAELGTCIS-RSGGDYAYILVA  103 (190)
Q Consensus        27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~-~li~~i~-~~~~~~~~aEl~s~~P-~~GG~y~~~~~~  103 (190)
                      +||++++++..+.++.+.  +++..+.  ....|   ...+. |+++++. .++.+++++||++++| ++||+|+|+++.
T Consensus         3 ~~~l~~~~~~~~~~~~v~--~~~~~~~--~a~~G---~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a   75 (507)
T TIGR00910         3 AKKLSLFGFFAITASMVL--AVYEYPT--FATSG---FHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNT   75 (507)
T ss_pred             CcEeeHHHHHHHHHHHHH--HHHhhHH--HHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhc
Confidence            577999999999998885  4443332  22333   34444 6666665 4779999999999997 899999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhHHHHHH---HHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHH
Q psy9206         104 FGELPAFLRLWVALLIMRPTTQAIV---ALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAV  180 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  180 (190)
                      +||++||.++|.+|+. +....+..   ......+..  .++..+.+.+...+...+++++++ ++|...  .+..++++
T Consensus        76 ~G~~~Gf~~~~~~W~~-~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~~~~~i~~l~i~~~~t-~~n~~G--~k~~~~i~  149 (507)
T TIGR00910        76 LGERFGFAAIFFGWFQ-IAIGFIPMIYFILGALSYIL--KFPALNEDPIIKFIAALIIFWALA-FSQFGG--TKRTAKIA  149 (507)
T ss_pred             cCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh--cCchhccCcHHHHHHHHHHHHHHH-HHHHhh--hHHHHHHH
Confidence            9999999999999883 32222222   122223333  134444445555555555566665 556553  44556655


Q ss_pred             H
Q psy9206         181 L  181 (190)
Q Consensus       181 ~  181 (190)
                      .
T Consensus       150 ~  150 (507)
T TIGR00910       150 K  150 (507)
T ss_pred             H
Confidence            3

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.39  E-value=2.8e-13  Score=117.16  Aligned_cols=101  Identities=25%  Similarity=0.378  Sum_probs=89.7

Q ss_pred             HHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHH
Q psy9206          36 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWV  115 (190)
Q Consensus        36 ~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~  115 (190)
                      ..++++.++|.|.+...+.....+|+.+ .++++++++++.++.+.+++|+++.+|++||.|.|++|.+||..|+.+||.
T Consensus         3 ~~~~ig~~ig~g~f~~~g~~~~~~G~~~-~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~   81 (478)
T PF00324_consen    3 FMISIGGIIGTGLFLGSGFAIAAAGPGG-APLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA   81 (478)
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHhccccc-chhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence            3467888999999999999888888754 678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhh
Q psy9206         116 ALLIMRPTTQAIVALTFAQYAIK  138 (190)
Q Consensus       116 ~~~~~~~~~~a~~~~~~~~~~~~  138 (190)
                      +|+ .+....+.+....+.++..
T Consensus        82 y~~-~~~~~~~~~~~~~~~~~~~  103 (478)
T PF00324_consen   82 YWL-SYIAAIAAEATAAGSFLQF  103 (478)
T ss_pred             HHH-HHHHHHHhhhhhhhhhhcc
Confidence            998 6777888887777776664

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=99.39  E-value=1.9e-11  Score=102.06  Aligned_cols=111  Identities=17%  Similarity=0.145  Sum_probs=97.4

Q ss_pred             cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCch
Q psy9206          28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGEL  107 (190)
Q Consensus        28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~  107 (190)
                      ++++.+|.+++.++.++|+|++..|+.....+|..  ++++++++++..++.++.++|+++++|++ +.+.|.++.+||+
T Consensus         1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~--~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~   77 (359)
T TIGR00912         1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQD--GWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKI   77 (359)
T ss_pred             CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCC--eeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHH
Confidence            36899999999999999999999999988888876  57889999999999999999999999987 5999999999999


Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCC
Q psy9206         108 PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP  142 (190)
Q Consensus       108 ~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~  142 (190)
                      .|++.+|.++. +.....+.....+++++...+.|
T Consensus        78 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  111 (359)
T TIGR00912        78 LGRLLSILFIL-YFFLIAAYLIRIFADFIKTYLLP  111 (359)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999887 56566777777888888754444

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.28  E-value=4.5e-11  Score=100.57  Aligned_cols=142  Identities=12%  Similarity=0.074  Sum_probs=96.4

Q ss_pred             HHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHH
Q psy9206          37 SIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVA  116 (190)
Q Consensus        37 ~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~  116 (190)
                      .+.+++++|+|++..|......++.+  .++..+++++.....+++++|+++++|++||.|.|+++.+||+.+++.+|.+
T Consensus         4 ~lv~gt~IGaGIl~lP~~~a~~g~~~--~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~   81 (381)
T TIGR00837         4 LIIAGTTIGAGMLALPTSTAGAWFIW--TLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL   81 (381)
T ss_pred             EEeehhhHhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence            35678899999999998866543332  5666788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhhhhCCC---CCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHhh
Q psy9206         117 LLIMRPTTQAIVALTFAQYAIKPFFPD---SELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACL  188 (190)
Q Consensus       117 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (190)
                      ++..+ ...++.....++++.. +++.   .+.+.+   .......+++. .++..  +.+..+|.+.+++...+
T Consensus        82 ~~~~~-~~~~ay~~~~~~~l~~-~~~~~~~~~~~~~---~~~~~~~~v~~-~l~~~--G~~~~~~v~~i~~~~~l  148 (381)
T TIGR00837        82 LFVLY-ILTYAYISGGGSILSR-LIGEYFGFPWSAR---AIVLIFTVLFG-SFVWL--STSAVDRITRVLIFGKI  148 (381)
T ss_pred             HHHHH-HHHHHHHHccHHHHHH-HHHHhcCCCccHH---HHHHHHHHHHH-HHHHh--chhHHHHHHHHHHHHHH
Confidence            87433 3444444444555554 2221   112222   22222222333 33443  34567788777766543

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.41  E-value=2.6e-05  Score=64.22  Aligned_cols=121  Identities=20%  Similarity=0.198  Sum_probs=101.1

Q ss_pred             ccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchh
Q psy9206          29 KITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELP  108 (190)
Q Consensus        29 ~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~  108 (190)
                      |+|.+|...+.+..++|++....|+.....+| .  ++++-+++++......+.+..+.+++|+.. .+.+.++.+||+.
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d--~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~l   76 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-D--AWISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWL   76 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C--cHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHH
Confidence            57899999999999999999999999888875 4  567889999999999999999999999875 8999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHH
Q psy9206         109 AFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAA  156 (190)
Q Consensus       109 ~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (190)
                      |...+..+.+ ++....+.....+.+.+...+.|.  .|.+.......
T Consensus        77 g~ii~~~~~l-~~l~~~~~~lr~~~~~i~~~~lp~--TP~~~i~~~~l  121 (320)
T PF03845_consen   77 GKIINLLYIL-YFLLISALVLREFSEFIKTYLLPE--TPIWVIILLFL  121 (320)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCc--CCHHHHHHHHH
Confidence            9999988877 566788888999999998765554  34444333333

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00814 stp serine transporter

Probab=98.24  E-value=3.8e-05  Score=65.33  Aligned_cols=95  Identities=11%  Similarity=0.078  Sum_probs=64.8

Q ss_pred             HHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHH----HHHhhhhccc-CcchHhhHHHHhCchhHH
Q psy9206          36 VSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALC----YAELGTCISR-SGGDYAYILVAFGELPAF  110 (190)
Q Consensus        36 ~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~----~aEl~s~~P~-~GG~y~~~~~~~g~~~~~  110 (190)
                      ....+++++|+|++..|..    +|..  .++.+++..++..+..+.    +.|.....|. +.+.+.++++.+||..|+
T Consensus         9 ~~~l~gt~IGaGiL~LP~~----ag~~--G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~   82 (397)
T TIGR00814         9 MLGLYGTAIGAGVLFLPIQ----AGLG--GLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGI   82 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHH
Confidence            4556778899999998875    2333  355667777766665554    4555444454 677999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206         111 LRLWVALLIMRPTTQAIVALTFAQYAI  137 (190)
Q Consensus       111 ~~gw~~~~~~~~~~~a~~~~~~~~~~~  137 (190)
                      +.++.|++. .............+.+.
T Consensus        83 ii~~lY~~~-~~~i~~aY~~~~~~~~~  108 (397)
T TIGR00814        83 LITLLYFFA-IYPILLIYSVAITNDSA  108 (397)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999999983 33454444544444443

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.22  E-value=4.4e-05  Score=64.87  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=84.4

Q ss_pred             ccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchh
Q psy9206          29 KITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELP  108 (190)
Q Consensus        29 ~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~  108 (190)
                      +-+.+....+.+|+.+|+|+...|.. ....|-. +..+..+++.......++.++|.+...|+..+.-.-+++.+||..
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~-~~~~Gf~-~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g   79 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIA-TAGAGFL-PSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG   79 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHH-HHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence            45678888999999999999998766 3444532 366667888888888999999999999998888889999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q psy9206         109 AFLRLWVALLIMRPTTQAIVALTFAQYAIKP  139 (190)
Q Consensus       109 ~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~  139 (190)
                      +++.+..+.+..+ ..........++.+.+.
T Consensus        80 ~~~~~~~~~~~~y-~ll~AYisg~g~~~~~~  109 (394)
T PF03222_consen   80 GIVIGISYLFLLY-ALLVAYISGGGSILSSL  109 (394)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHccHHHHHHH
Confidence            9999988877444 34445555666666653

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=98.13  E-value=0.00016  Score=61.10  Aligned_cols=137  Identities=17%  Similarity=0.207  Sum_probs=90.7

Q ss_pred             HhhhhhcchhccchHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHHH
Q psy9206          39 IVGCIIGSGIFVSPAGVLAETQSV-GLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVAL  117 (190)
Q Consensus        39 ~~~~~ig~g~~~~~~~~~~~~G~~-g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~~  117 (190)
                      -++.-.|+|.+..|.....++|+. .+++++|++.+++.-+.+..      +.|++||.|++..+.+||+.+++.+|..+
T Consensus         4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~   77 (378)
T TIGR00796         4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILY   77 (378)
T ss_pred             HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHH
Confidence            345557899999999999999976 66777899999998887777      89999999999999999999999999988


Q ss_pred             HHHHhHH----HHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHHHHhh
Q psy9206         118 LIMRPTT----QAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLAAACL  188 (190)
Q Consensus       118 ~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (190)
                      ....+..    ++..++.++  +. .+.|... . .....+..++...++..++.  +..+..++.+-+++-.+|
T Consensus        78 l~iGP~~aiPRtaa~s~e~~--i~-p~~~~~~-~-~~~l~i~siiff~i~~~l~~--~~~k~~~~iGk~LTP~lL  145 (378)
T TIGR00796        78 LTIGPLFAIPRTATVSFEMG--IA-PLLHSPT-S-LLALFIFSLIFFAVVLLLSL--NPSKLIDRVGKFLTPALL  145 (378)
T ss_pred             HHHHhchhhhHHHHHHHHHH--HH-hccCccc-c-hHHHHHHHHHHHHHHHHHHc--CcccHHHHhHHHHHHHHH
Confidence            6444444    455555544  23 2444211 1 11111211222222212233  345667888877776554

transmembrane helical spanners.

>PRK10483 tryptophan permease; Provisional

Probab=97.99  E-value=0.00039  Score=59.37  Aligned_cols=111  Identities=16%  Similarity=0.091  Sum_probs=85.1

Q ss_pred             cccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhC
Q psy9206          26 MKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFG  105 (190)
Q Consensus        26 l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g  105 (190)
                      .|++.+.+....+..|+.+|+|++..|.. ....|-. ++++.++++.+.+...++.+.|.+..+|+.-+.-.-+++.+|
T Consensus         7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~-~a~~GF~-~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG   84 (414)
T PRK10483          7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVV-MSGAWFF-WSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG   84 (414)
T ss_pred             ccCCCcHHHHHHHHHHchHhHHHHHHHHH-HHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence            46779999999999999999999988755 4455532 467778888899999999999999999988888889999999


Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q psy9206         106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKP  139 (190)
Q Consensus       106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~  139 (190)
                      |....+.+..+.+..+ ..........++.+...
T Consensus        85 ~~g~~i~~~s~lfl~Y-~Ll~AYisg~g~il~~~  117 (414)
T PRK10483         85 KGWNVVNGISIAFVLY-ILTYAYISASGSILHHT  117 (414)
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHhCcHHHHHHH
Confidence            9877776655555334 33444455566666653

>PRK09664 tryptophan permease TnaB; Provisional

Probab=97.87  E-value=0.00074  Score=57.66  Aligned_cols=106  Identities=14%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             chhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHH
Q psy9206          31 TLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF  110 (190)
Q Consensus        31 ~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~  110 (190)
                      +......+..|+++|+|++..|.. ....|-. ++.+.++++.+.+...++.+.|.+..+|+.-+.-.-+++.+||..-.
T Consensus        10 ~~~gg~~iIaGT~IGAGMLaLP~~-~a~~Gf~-~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~   87 (415)
T PRK09664         10 SAFWGVMVIAGTVIGGGMFALPVD-LAGAWFF-WGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI   87 (415)
T ss_pred             chhhhhHHhhhccHhHHHHHHHHH-HhcccHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence            666688999999999999988755 4444532 46667888888999999999999999998888888999999998777


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q psy9206         111 LRLWVALLIMRPTTQAIVALTFAQYAIKP  139 (190)
Q Consensus       111 ~~gw~~~~~~~~~~~a~~~~~~~~~~~~~  139 (190)
                      +.+..+.+..+ ..+.......++.+...
T Consensus        88 i~~~~~~fl~Y-~Ll~AYisggG~il~~~  115 (415)
T PRK09664         88 ISGITVAFVLY-ILTYAYISANGAIISET  115 (415)
T ss_pred             HHHHHHHHHHH-HHHHHHHhccHHHHHHH
Confidence            76665554233 33444555556666553

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=97.69  E-value=0.0022  Score=54.91  Aligned_cols=111  Identities=15%  Similarity=0.152  Sum_probs=86.6

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCc-chHhhHHHH
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSG-GDYAYILVA  103 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~G-G~y~~~~~~  103 (190)
                      +.+++-+.++......++++|+|+...|.. ....| -.+.+...++++.......+.+.|.....|+.. +.+.-+++.
T Consensus         4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a-~~~~G-~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~   81 (415)
T COG0814           4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVA-FGGGG-FWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDY   81 (415)
T ss_pred             cccCCcchHHHHHHHHccccccchhhhhHH-hcCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHH
Confidence            455667788889999999999999998654 44444 234566688888999999999999999999984 888899999


Q ss_pred             hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206         104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK  138 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~  138 (190)
                      +||.++++.+-.+.+. ......+.....++.+.+
T Consensus        82 ~G~~~~~li~~s~~~~-~~~~~~aY~~~~g~~l~~  115 (415)
T COG0814          82 LGKKGGILIGLSYFFA-LYGLLVAYIVGIGNLLAS  115 (415)
T ss_pred             hCcchHHHHHHHHHHH-HHHHHHHHHhcchhHHHH
Confidence            9999999999887773 334455556666666665

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=97.59  E-value=0.0029  Score=53.95  Aligned_cols=105  Identities=17%  Similarity=0.198  Sum_probs=77.1

Q ss_pred             chhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHH
Q psy9206          31 TLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAF  110 (190)
Q Consensus        31 ~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~  110 (190)
                      +.....++..|+.+|+|+...|.. ....|-. +.++..+++.......+..++|.+..+|..-+...-+++.+||..++
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~-~~~~Gf~-~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~   81 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLA-AAGVGFS-VTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW   81 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHH-HHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence            566778889999999999998755 3344532 35555677777677788889999888887777888899999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206         111 LRLWVALLIMRPTTQAIVALTFAQYAIK  138 (190)
Q Consensus       111 ~~gw~~~~~~~~~~~a~~~~~~~~~~~~  138 (190)
                      +....|.+..+ ..+.......++.+..
T Consensus        82 i~~~~y~fl~y-~ll~AYisg~g~il~~  108 (403)
T PRK15132         82 LTGFSMMFLMY-ALTAAYISGAGELLAS  108 (403)
T ss_pred             HHHHHHHHHHH-HHHHHHHhCcHHHHHH
Confidence            99988877333 3444455554444433

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.41  E-value=0.017  Score=49.82  Aligned_cols=106  Identities=14%  Similarity=0.118  Sum_probs=70.8

Q ss_pred             ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCcchHhhHHHHhC
Q psy9206          27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCI-SRSGGDYAYILVAFG  105 (190)
Q Consensus        27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~-P~~GG~y~~~~~~~g  105 (190)
                      +|.-..|  ....+|+.+|+|+...|-. ....|- .+.++..+++..+.......++|..... |+..+.-.-+++.+|
T Consensus        18 ~~~d~~W--~l~l~GTAIGAGmLfLPI~-~g~~Gf-~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG   93 (443)
T PRK13629         18 RKSDTTW--TLGLFGTAIGAGVLFFPIR-AGFGGL-IPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFG   93 (443)
T ss_pred             ccccchH--HHHHHHHHHhHHHHHHHHH-HhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcC
Confidence            3444444  3556778899999988655 333342 2355557777777778889999999998 555556677888999


Q ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206         106 ELPAFLRLWVALLIMRPTTQAIVALTFAQYAI  137 (190)
Q Consensus       106 ~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~  137 (190)
                      |..+.+.+..|.+..++ .+......+.+.+.
T Consensus        94 ~~g~~i~~ilYff~ly~-ll~aY~~~itn~l~  124 (443)
T PRK13629         94 KTGGVVITFLYFFAICP-LLWIYGVTITNTFM  124 (443)
T ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            99999999888873332 23333344444443

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=97.33  E-value=0.01  Score=50.68  Aligned_cols=82  Identities=18%  Similarity=0.287  Sum_probs=59.5

Q ss_pred             cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------Ccch
Q psy9206          24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-------SGGD   96 (190)
Q Consensus        24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~-------~GG~   96 (190)
                      ++-+++++.+|.++.+.+..+|.|-......+...+|| |...|.| +.+++...+.++=.-|+..|.+       .||.
T Consensus        13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMW-i~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP   90 (416)
T PF01235_consen   13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMW-ISALLGMATKYAEVTLAQKYREKDEDGEYRGGP   90 (416)
T ss_pred             CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHH-HHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence            34456799999999999999999988776676655554 4344444 4555666666766667776653       4788


Q ss_pred             HhhHHHHhCch
Q psy9206          97 YAYILVAFGEL  107 (190)
Q Consensus        97 y~~~~~~~g~~  107 (190)
                      ..|.++.++.+
T Consensus        91 ~yyi~~gl~~k  101 (416)
T PF01235_consen   91 MYYIEKGLGSK  101 (416)
T ss_pred             HHHHHHHhccc
Confidence            99999988765

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>KOG2083|consensus

Probab=97.24  E-value=0.0014  Score=57.50  Aligned_cols=154  Identities=16%  Similarity=0.097  Sum_probs=100.5

Q ss_pred             ccccchhHHHHHHhhh-hhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCcchHhhHHHHh
Q psy9206          27 KRKITLLGGVSIIVGC-IIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAF  104 (190)
Q Consensus        27 ~r~l~~~~~~~~~~~~-~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P-~~GG~y~~~~~~~  104 (190)
                      +-++++++-.....-. +-|.=.|.-.+-+..++|-. ..++...++..+....++|-.-+++.=. +.||.|.-++|..
T Consensus        27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~-~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl  105 (643)
T KOG2083|consen   27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIG-NSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL  105 (643)
T ss_pred             ceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhh-hhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence            3458888776552221 21222233344445566632 3455556667777777888777777554 6899999999999


Q ss_pred             CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206         105 GELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA  184 (190)
Q Consensus       105 g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  184 (190)
                      |+-.|--.|-+|.+ +...+++.....+++-+...+ ..+  ..+...-++.+.++++. .+|....+|+  +++|.++.
T Consensus       106 g~efggsigiIy~f-~~aVa~am~~vgfaEsv~~l~-~~~--s~~~i~gi~~vt~~ill-~i~~ag~~w~--~k~q~~ll  178 (643)
T KOG2083|consen  106 GPEFGGSIGIIYAF-ANAVATAMYVVGFAESVAHLF-ETE--SKEMIDGIGSVTVLILL-AINVAGVEWE--AKLQIVLL  178 (643)
T ss_pred             cccccchhHHHHHH-HHHHHHHHhhhhHHHHHHHHH-Hhc--cHHHhcchhHHHHHHHH-HhhhccchhH--HHHHHHHH
Confidence            99999988988888 677889999999999988743 322  23333335554444444 5666655555  78887776


Q ss_pred             HHhh
Q psy9206         185 AACL  188 (190)
Q Consensus       185 ~~~~  188 (190)
                      .+++
T Consensus       179 ~il~  182 (643)
T KOG2083|consen  179 LILL  182 (643)
T ss_pred             HHHH
Confidence            6654

>KOG1303|consensus

Probab=97.08  E-value=0.013  Score=50.49  Aligned_cols=111  Identities=16%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-----hHhh
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-----DYAY   99 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG-----~y~~   99 (190)
                      ..+|.-++++.....++.++|.|+...|.. ..+.|=. +.+...++.+++.+-.++.+.++-...|.-.|     .-.-
T Consensus        33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~lGW~-~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl  110 (437)
T KOG1303|consen   33 TPSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQLGWI-SGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL  110 (437)
T ss_pred             ccCCCCcceehhhheehhhhhhhhhhhHHH-HHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence            347889999999999999999999988744 5565522 23556788888888888888888888887777     3444


Q ss_pred             HHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206         100 ILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK  138 (190)
Q Consensus       100 ~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~  138 (190)
                      .+++||++.-+++++.... .....+.......++.+..
T Consensus       111 ~~~afG~~~~~iv~~~~~~-~~fg~~v~y~il~~~~L~~  148 (437)
T KOG1303|consen  111 GQAAFGPKGRLLVSVLQYL-ELFGICVVYIILAGDNLKA  148 (437)
T ss_pred             HHHHhCCCceEeeeHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            5678998887777777665 2223333344555555554

>TIGR00835 agcS amino acid carrier protein

Probab=96.78  E-value=0.12  Score=44.53  Aligned_cols=107  Identities=16%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc--C-----cchHhhH
Q psy9206          28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR--S-----GGDYAYI  100 (190)
Q Consensus        28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~--~-----GG~y~~~  100 (190)
                      ++++.++.++.+.+..+|.|-......+...+|| |...|.|+ .+++...+.++-.-++..+.+  +     ||.-.|.
T Consensus        45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGp-GAvFWMWI-~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi  122 (425)
T TIGR00835        45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGP-GAVFWMWV-TAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYI  122 (425)
T ss_pred             CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC-CchHHHHH-HHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence            4599999999999999999844443444656564 43555554 444455555555556665542  2     3444777


Q ss_pred             HHHh-CchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q psy9206         101 LVAF-GELPAFLRLWVALLIMRPTTQAIVALTFAQYAI  137 (190)
Q Consensus       101 ~~~~-g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~  137 (190)
                      ++.+ +|+++.+.... .+.+.............+.+.
T Consensus       123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~  159 (425)
T TIGR00835       123 KKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALS  159 (425)
T ss_pred             HHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHH
Confidence            7765 47777665544 221222233444555555555

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>PTZ00206 amino acid transporter; Provisional

Probab=96.38  E-value=0.21  Score=43.49  Aligned_cols=102  Identities=8%  Similarity=0.064  Sum_probs=63.7

Q ss_pred             hHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHH
Q psy9206          33 LGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLR  112 (190)
Q Consensus        33 ~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~  112 (190)
                      .+...--...++|+|+...|.. ..+.|-. +.++..++.+++.......+.+.+... +.-....-.++.+||+..+++
T Consensus        63 ~~s~fnL~~~~iGaGILsLP~A-f~~~G~v-~giillil~a~ls~ys~~lL~~~~~~~-~~~sY~~la~~~~G~~g~~~v  139 (467)
T PTZ00206         63 AASAFNIASSTVGAGIVGLPSA-ANSSGLV-MAMIYLIIITAMTIFSIYALGVAADKT-NIRTYEGVARVLLGPWGSYYV  139 (467)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHH-HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHhCHHHHHHH
Confidence            4444556666789999988655 5555532 244445556666655556666665543 333344455667999999998


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206         113 LWVALLIMRPTTQAIVALTFAQYAIK  138 (190)
Q Consensus       113 gw~~~~~~~~~~~a~~~~~~~~~~~~  138 (190)
                      .....+ .....+.+.....++.+..
T Consensus       140 ~~~~~~-~~~G~cv~YlIiigd~l~~  164 (467)
T PTZ00206        140 AATRAF-HGFSACVAYVISVGDILSA  164 (467)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            877766 3335556666667776665

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=96.10  E-value=0.63  Score=40.11  Aligned_cols=87  Identities=20%  Similarity=0.247  Sum_probs=61.6

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccc-------CcchH
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISR-------SGGDY   97 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~-------~GG~y   97 (190)
                      +-++.++.++.++.+.+..+|+|-......+...+|| |...|.|+. ++....+.++=+-|+..|.+       .||.-
T Consensus        58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~-Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~  135 (452)
T COG1115          58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIV-ALFGMATKFAESTLAQKYRVKDKDGEYRGGPA  135 (452)
T ss_pred             CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHH-HHHHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence            4567799999999999999999988776666655554 535555554 45556677777778887762       36788


Q ss_pred             hhHHHHhCc-hhHHHHH
Q psy9206          98 AYILVAFGE-LPAFLRL  113 (190)
Q Consensus        98 ~~~~~~~g~-~~~~~~g  113 (190)
                      +|.++.+|. +++-+.+
T Consensus       136 yYi~kGl~~r~l~v~FA  152 (452)
T COG1115         136 YYIEKGLGMRWLAVLFA  152 (452)
T ss_pred             HHHHhhcCCcHHHHHHH
Confidence            899998873 4444443

>KOG2082|consensus

Probab=95.83  E-value=0.053  Score=49.31  Aligned_cols=76  Identities=18%  Similarity=0.213  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcc-cCcchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCC
Q psy9206          66 IVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFP  142 (190)
Q Consensus        66 ~~~~li~~i~~~~~~~~~aEl~s~~P-~~GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~  142 (190)
                      +..-+++....++++.|++-+++.=- .+||.|.-++|.+||-.|-.+|-.+.+ +..++.+..-....+.+..+.+|
T Consensus       150 fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGPEFGgAVGlcFYL-gtT~AaaMYIlGaVEi~L~Yi~P  226 (1075)
T KOG2082|consen  150 FLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYL-GTTVAAAMYILGAVEIFLTYIFP  226 (1075)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCccccceeeehhhh-hhHHHHHHHHHhHHHHHHHHHcc
Confidence            33345566666678888888887433 479999999999999999888877776 66666676666777766665544

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=93.82  E-value=3  Score=35.98  Aligned_cols=92  Identities=14%  Similarity=0.087  Sum_probs=48.8

Q ss_pred             cccccccchhHHHHHHhhhhhcchhccchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHH
Q psy9206          24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILV  102 (190)
Q Consensus        24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G-~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~  102 (190)
                      ++-+|+-++++.+.+=++..+...-+..- ......| +...++++-+++.++........+..+.++-..  +....+.
T Consensus         8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~G-a~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~--~~v~sR~   84 (442)
T TIGR00800         8 KEEERTWSFLNYFSLWLGAAFNIATWAIG-ALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLP--FPVLSRA   84 (442)
T ss_pred             CcccCCccHHHHHHHHHHHhhhHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCC--cchhhhh
Confidence            44456778888888766655432222221 1122222 112234444444444444444555555544332  5667778


Q ss_pred             HhCchhHHHHHHHHHH
Q psy9206         103 AFGELPAFLRLWVALL  118 (190)
Q Consensus       103 ~~g~~~~~~~gw~~~~  118 (190)
                      .||.+-+.+.....++
T Consensus        85 ~FG~~Gs~~~~~~~~i  100 (442)
T TIGR00800        85 SFGIYGSLLPSLLRIV  100 (442)
T ss_pred             hhhhhHhHHHHHHHHH
Confidence            8998888777766555

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PRK11375 allantoin permease; Provisional

Probab=93.65  E-value=4.6  Score=35.43  Aligned_cols=93  Identities=11%  Similarity=0.049  Sum_probs=44.6

Q ss_pred             ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhh
Q psy9206          21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY   99 (190)
Q Consensus        21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G-~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~   99 (190)
                      +..++-+|+-++++.+.+=++..+..+.+...+..+ ..| +...++++.+++.++........+-.+.++..  +....
T Consensus        18 ~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l-~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~   94 (484)
T PRK11375         18 LPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF-ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMI   94 (484)
T ss_pred             CcCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHh
Confidence            334455788889998888666554322221222222 222 11112333333333333333333333333322  35567


Q ss_pred             HHHHhCchhHHHHHHHH
Q psy9206         100 ILVAFGELPAFLRLWVA  116 (190)
Q Consensus       100 ~~~~~g~~~~~~~gw~~  116 (190)
                      .+..||.+-+.+.....
T Consensus        95 sR~sFG~~Gs~l~~~~r  111 (484)
T PRK11375         95 LRASYGVRGALFPGLLR  111 (484)
T ss_pred             HHHHHccccchHHHHHH
Confidence            77788876555555443

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=93.22  E-value=2.7  Score=36.43  Aligned_cols=92  Identities=13%  Similarity=0.030  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCC
Q psy9206          65 SIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS  144 (190)
Q Consensus        65 ~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  144 (190)
                      ++++.+++.++-.......++++......  |..-++..||.+-+++..-..++ ......+......++....    ..
T Consensus        54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~-~~iGW~~v~~~l~~~a~~~----~~  126 (442)
T COG1457          54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGI-TLIGWFGVNVILSGIAIGS----GT  126 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHH-HHhhHHHHHHHHhcccccc----CC
Confidence            34444555555444555555655544332  34444556888877776655554 2222333333334443221    22


Q ss_pred             CCcHHHHHHHHHHHHHHHH
Q psy9206         145 ELPDRAVLLLAAACLCKNG  163 (190)
Q Consensus       145 ~~~~~~~~~~~~~~l~~~~  163 (190)
                      ..+.+...++..++.++.+
T Consensus       127 ~~~~~~~ili~g~l~~l~~  145 (442)
T COG1457         127 GLPVWAGILIIGVLMTLVT  145 (442)
T ss_pred             CCcHHHHHHHHHHHHHHHH
Confidence            3344554544444444444

>PLN03074 auxin influx permease; Provisional

Probab=91.90  E-value=5.7  Score=34.79  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=47.9

Q ss_pred             cchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH----HhhhhcccCcchH-----hhH
Q psy9206          30 ITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA----ELGTCISRSGGDY-----AYI  100 (190)
Q Consensus        30 l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~a----El~s~~P~~GG~y-----~~~  100 (190)
                      -+..+...-.....+|.|+...|.. ..+.|-. +.++..++.+++..-..+.+.    |...+.|+.+-.|     .|-
T Consensus        46 ~s~~~~~~~l~~~~vG~GILaLP~A-f~~~G~v-~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~  123 (473)
T PLN03074         46 GSVYDAWFSCASNQVAQVLLTLPYS-FSQLGML-SGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF  123 (473)
T ss_pred             chHHHHHHHHHHHHHhHHHHhHHHH-HHHccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence            4444444446677789999988755 5566632 245556666666655555544    4555566544222     222


Q ss_pred             ---HHHhCchhHHHHHH
Q psy9206         101 ---LVAFGELPAFLRLW  114 (190)
Q Consensus       101 ---~~~~g~~~~~~~gw  114 (190)
                         .+.+||.+..+...
T Consensus       124 e~~~~~~G~~~~~~~~~  140 (473)
T PLN03074        124 EVLDGLLGPYWKNVGLA  140 (473)
T ss_pred             HHHHHhcChhHHHHHHH
Confidence               33578887766643

>KOG1288|consensus

Probab=90.38  E-value=0.5  Score=42.90  Aligned_cols=86  Identities=13%  Similarity=0.129  Sum_probs=59.7

Q ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCcchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHH
Q psy9206          53 AGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCIS-RSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALT  131 (190)
Q Consensus        53 ~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P-~~GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~  131 (190)
                      +.+..++|-.- .+.-++++-.+.+++.++..-+++.=- +.||.|.-++|.+||-.|--.|-.+.+ +.++.++.....
T Consensus        91 gfIvG~aGll~-Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpEfGGSIGllFf~-anV~~~am~isG  168 (945)
T KOG1288|consen   91 GFIVGQAGLLK-TLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPEFGGSIGLLFFV-ANVFNCAMNISG  168 (945)
T ss_pred             hhhhcchHHHH-HHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcccCCeeeehhhH-HHHhcchhhhhh
Confidence            34444444221 333466677777777888888877443 678999999999999888777766666 666788887777


Q ss_pred             HHHHhhhhh
Q psy9206         132 FAQYAIKPF  140 (190)
Q Consensus       132 ~~~~~~~~~  140 (190)
                      +.+-+...+
T Consensus       169 ~vE~il~nf  177 (945)
T KOG1288|consen  169 FVEPILDNF  177 (945)
T ss_pred             hhHHHHHhc
Confidence            777776544

>KOG1304|consensus

Probab=90.36  E-value=11  Score=32.71  Aligned_cols=111  Identities=13%  Similarity=0.116  Sum_probs=63.6

Q ss_pred             ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHhhhhcccC----------
Q psy9206          27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTI---GALCYAELGTCISRS----------   93 (190)
Q Consensus        27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~---~~~~~aEl~s~~P~~----------   93 (190)
                      ++-.+..+.+.--+-.++|+|++..|.. ....|-....+...+++.+...+   +..+--+++.+.-++          
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~A-Fk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~  122 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLA-FKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES  122 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHH-HHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence            3447777877777888899999988755 66666332122224444443333   233344444443111          


Q ss_pred             --cchHhhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q psy9206          94 --GGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF  140 (190)
Q Consensus        94 --GG~y~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~  140 (190)
                        .+.|.| .|.+||+..+++-....+ .....++......++-+++.+
T Consensus       123 a~~~~~~~-~r~~g~~~r~~V~~~L~i-~QlGfc~vY~VFva~nl~~i~  169 (449)
T KOG1304|consen  123 AMEGGPGW-LRKYGPAARFVVNFFLVI-TQLGFCCVYLVFVATNLKQIV  169 (449)
T ss_pred             HHcCCcHH-HHhhcHHHHHHHHHHHHH-HHhchhhEEeeeHHhhHHHHH
Confidence              112225 677888888887755555 454556666666677777643

>TIGR00813 sss transporter, SSS family

Probab=89.73  E-value=12  Score=31.85  Aligned_cols=148  Identities=12%  Similarity=-0.039  Sum_probs=77.8

Q ss_pred             ccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCc
Q psy9206          27 KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGE  106 (190)
Q Consensus        27 ~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~  106 (190)
                      .|+++++-...-..+...+++.+..........|-.  ..+..+...+..+..+..+.+.-.+.+ .-..+.|.++-||+
T Consensus         2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~   78 (407)
T TIGR00813         2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA--IGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGK   78 (407)
T ss_pred             CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCc
Confidence            477888877776666666555554433333343421  122222222333445556666544433 34588888999998


Q ss_pred             -hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHHH
Q psy9206         107 -LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLLA  184 (190)
Q Consensus       107 -~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  184 (190)
                       ....+.+....+ ......+......+..+.. +. +  .+.+...++..+++++-+ .. .-......++.+|.++.
T Consensus        79 ~~~~~~~~~~~i~-~~~~~~~~q~~g~~~il~~-~~-g--i~~~~~~ii~~~i~~~Yt-~~-GG~~av~~Td~iQ~~i~  150 (407)
T TIGR00813        79 RILRGLSVLSLIL-YIFLYMSVDLFSGALLIEL-IT-G--LDLYLSLLLLGAITILYT-VF-GGLKAVVWTDTIQAVIM  150 (407)
T ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-Hh-C--chHHHHHHHHHHHHHHHH-HH-cchHHHHHHHHHHHHHH
Confidence             455666655544 3445666667777777765 32 2  233444444333333333 12 22223356777776553

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PRK00701 manganese transport protein MntH; Reviewed

Probab=87.25  E-value=19  Score=31.27  Aligned_cols=44  Identities=14%  Similarity=0.027  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcccC-c-chHhhHHHHhCchhHHHH
Q psy9206          69 WTVCGLLSTIGALCYAELGTCISRS-G-GDYAYILVAFGELPAFLR  112 (190)
Q Consensus        69 ~li~~i~~~~~~~~~aEl~s~~P~~-G-G~y~~~~~~~g~~~~~~~  112 (190)
                      ++..-++..+..+.+-|++.+.-.. | +...-.++.++|+.++..
T Consensus        67 LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~  112 (439)
T PRK00701         67 LLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFL  112 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHH
Confidence            3445555666777888888877642 3 566677888998887765

>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines

Probab=84.63  E-value=12  Score=32.17  Aligned_cols=109  Identities=18%  Similarity=0.058  Sum_probs=49.7

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-hHhhHHH
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-DYAYILV  102 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G-~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG-~y~~~~~  102 (190)
                      +-+|+-++++.+.+=++..+....+..-.. ....| +..-++++.+++.++........+.++   |+.|= +...++.
T Consensus         4 ~~~R~~~~~~~~~iW~~~~~~~~~~~~G~~-~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G---~r~Gl~~~v~sR~   79 (440)
T PF02133_consen    4 ESERTWSPWSLFWIWFGANISIATFVTGAL-GVALGLSFWQAILAILIGNLLGAILVALMGIIG---PRTGLPTMVLSRA   79 (440)
T ss_dssp             -GG--B-HHHHHHHHCHHH-SCHHH-HHHH-HHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH---HCC---HHHHTTT
T ss_pred             hhcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHccCchHHHHHHHHHHHHHHHHHHHHHhcccc---cccCCCchhcchh
Confidence            456778888888876655543333322111 22223 111233344444444433333344444   44443 4445566


Q ss_pred             HhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy9206         103 AFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIK  138 (190)
Q Consensus       103 ~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~  138 (190)
                      .||.+-+.+......+ ..+...+......++.+..
T Consensus        80 ~FG~~Gs~l~~~l~~i-~~igW~av~~~~~g~al~~  114 (440)
T PF02133_consen   80 SFGYRGSKLPSLLRAI-SAIGWFAVNTWLGGQALAA  114 (440)
T ss_dssp             TS-TTTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            7888877777766554 2223445555555555554

Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=83.68  E-value=1.2  Score=37.46  Aligned_cols=89  Identities=21%  Similarity=0.326  Sum_probs=65.0

Q ss_pred             cccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhh---HHHHh
Q psy9206          28 RKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAY---ILVAF  104 (190)
Q Consensus        28 r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~---~~~~~  104 (190)
                      ||-+.++.....++.++|+|.+..|.. ..+.|-. ..++..++.++........+.|.....|+..+...|   .++.+
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a-f~~~G~~-~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~   78 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYA-FAQSGWV-LGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF   78 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHH-HHHhhhh-hhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence            467889999999999999999998766 4455532 245556777777888888899998877633334444   36779


Q ss_pred             CchhHHHHHHHHHH
Q psy9206         105 GELPAFLRLWVALL  118 (190)
Q Consensus       105 g~~~~~~~gw~~~~  118 (190)
                      ||+..++......+
T Consensus        79 G~~~~~~~~~~~~~   92 (409)
T PF01490_consen   79 GPKGKWFVDICIFI   92 (409)
T ss_pred             cccccccccchhee
Confidence            99888887766554

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=82.40  E-value=28  Score=29.15  Aligned_cols=118  Identities=17%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             HHHHhhhhhcchhccchHHHHHhcccch-HHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHhCchhHHHHHH
Q psy9206          36 VSIIVGCIIGSGIFVSPAGVLAETQSVG-LSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAFGELPAFLRLW  114 (190)
Q Consensus        36 ~~~~~~~~ig~g~~~~~~~~~~~~G~~g-~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~g~~~~~~~gw  114 (190)
                      ....++.++|+| |.+-.+..+..|+-| .+.++-++++++....+....|++.++.. ...-.+.++..||+.+-+---
T Consensus         9 ~f~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d~   86 (349)
T COG3949           9 AFAFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIIDI   86 (349)
T ss_pred             HHHHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHHH
Confidence            344667788877 555577777776543 24556899999999999999999998864 446678888899888876543


Q ss_pred             HHHHHHHhHHHHHHHHHHHH-HhhhhhCCCCCCcHHHHHHHHHHHHHH
Q psy9206         115 VALLIMRPTTQAIVALTFAQ-YAIKPFFPDSELPDRAVLLLAAACLCK  161 (190)
Q Consensus       115 ~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (190)
                      ...+  .....++...+.+. .+.+.    ++.|.|...++.+.+..+
T Consensus        87 ~iif--~lf~~~vVM~AGags~~~e~----~~lP~wiGali~i~~v~i  128 (349)
T COG3949          87 IIIF--FLFSTAVVMLAGAGSLLEEM----FGLPYWIGALIIILLVLI  128 (349)
T ss_pred             HHHH--HHHHHHHHHhccchhHHHHH----hCccHHHHHHHHHHHHHH
Confidence            3332  22444444433333 44432    345666664544444333

>PRK11017 codB cytosine permease; Provisional

Probab=80.17  E-value=36  Score=29.01  Aligned_cols=89  Identities=19%  Similarity=0.125  Sum_probs=42.8

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQ-SVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  103 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G-~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~  103 (190)
                      +.+|+ +.++....-++..+....+...+. + ..| +..-++++.+++.++........+-.+.++-.  .+....+..
T Consensus         6 ~~~r~-~~~~~~~~~~g~~~~~~~~~~g~~-l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~   80 (404)
T PRK11017          6 QSARK-GVLSLTMVMLGFTFFSASMWAGGT-L-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFS   80 (404)
T ss_pred             HHHhc-chHhHHHHHHHHHHHHHHHHHHHH-H-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHH
Confidence            34455 778876554444432222222122 2 122 22223434444444444444444444443322  255566777


Q ss_pred             hCchhHHHHHHHHHH
Q psy9206         104 FGELPAFLRLWVALL  118 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~  118 (190)
                      ||.+-+.+.....++
T Consensus        81 FG~~Gs~l~~~~~~i   95 (404)
T PRK11017         81 FGEKGSWLPSLLLGF   95 (404)
T ss_pred             hchhHHHHHHHHHHH
Confidence            998888877655554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	3e-19
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	1e-13
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	5e-08

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 83.2 bits (206), Expect = 3e-19
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 25  QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYA 84
               K+ L+    ++ G I+GSG+F+ PA +     + G++I  W V  + +   ++ YA
Sbjct: 5   ADAHKVGLIPVTLMVSGAIMGSGVFLLPANL---ASTGGIAIYGWLVTIIGALGLSMVYA 61

Query: 85  ELGTCISRSGGDYAYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDS 144
           ++       GG YAY    FG    +    +  L       A+V +      +  FFP  
Sbjct: 62  KMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVG--YLSYFFP-- 117

Query: 145 ELPDRAVLLLAAACLC 160
            L D  VL +    + 
Sbjct: 118 ILKDPWVLTITCVVVL 133

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 8/119 (6%)

Query: 25  QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAET--QSVGLSIVIWTVCGLLSTIGALC 82
              +K++L   VS+ VG +IG+ IF    GV A+   +++  + ++    G+ + + A  
Sbjct: 3   LKNKKLSLWEAVSMAVGVMIGASIFSIF-GVGAKIAGRNLPETFIL---SGIYALLVAYS 58

Query: 83  YAELGTCISRSGGDYAYILVAFGE-LPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF 140
           Y +LG  I  + G  A+I  A G+ +         L +    + A+ A  FA Y +   
Sbjct: 59  YTKLGAKIVSNAGPIAFIHKAIGDNIITGALSI-LLWMSYVISIALFAKGFAGYFLPLI 116

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 13/134 (9%)

Query: 27  KRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVI-WTVCGLLSTI-GALCYA 84
            +++TLLG        I  S +          T   G S+V    + G+L  I   LC A
Sbjct: 10  AKQLTLLG-----FFAITASMVMAVYEYPTFATS--GFSLVFFLLLGGILWFIPVGLCAA 62

Query: 85  ELGTCIS-RSGGDYAYILVAFGELPAFL---RLWVALLIMRPTTQAIVALTFAQYAIKPF 140
           E+ T      GG +A++    G    F      ++ + I        V    +     P 
Sbjct: 63  EMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPA 122

Query: 141 FPDSELPDRAVLLL 154
             +  +      L+
Sbjct: 123 LNEDPITKTIAALI 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.81
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.77
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.72
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	96.25

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.81  E-value=3.7e-19  Score=150.27  Aligned_cols=153  Identities=21%  Similarity=0.257  Sum_probs=119.4

Q ss_pred             cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHH
Q psy9206          24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVA  103 (190)
Q Consensus        24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~  103 (190)
                      +++||+++.++.+++.++.++|+|++..++. ....|+.  .+++|+++++..++.+++++|+++++|++||.|+|+++.
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~-~~~~G~~--~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~   80 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPAN-LASTGGI--AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRC   80 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHH-HHHHCTH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHH-HHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence            4568999999999999999999999998877 4456754  678999999999999999999999999999999999999


Q ss_pred             hCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHH
Q psy9206         104 FGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLL  183 (190)
Q Consensus       104 ~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  183 (190)
                      +||+.||+.+|.+++ .+....+.....+++++.. ++|..+ +++...++..+++++++ .+|...  .+..++.+.++
T Consensus        81 ~G~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~-~in~~g--~~~~~~~~~~~  154 (445)
T 3l1l_A           81 FGPFLGYQTNVLYWL-ACWIGNIAMVVIGVGYLSY-FFPILK-DPWVLTITCVVVLWIFV-LLNIVG--PKMITRVQAVA  154 (445)
T ss_dssp             SCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTT-TCGGGG-SHHHHHHHHHHHHHHHH-HHHHHC--HHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HCcccc-ccHHHHHHHHHHHHHHH-HHHHhc--hHHHHHHHHHH
Confidence            999999999999998 4556777788888888875 555433 23555555555555555 566654  34456666555


Q ss_pred             HH
Q psy9206         184 AA  185 (190)
Q Consensus       184 ~~  185 (190)
                      +.
T Consensus       155 ~~  156 (445)
T 3l1l_A          155 TV  156 (445)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.77  E-value=1.1e-17  Score=141.25  Aligned_cols=153  Identities=20%  Similarity=0.225  Sum_probs=121.1

Q ss_pred             ccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcchHhhHHHHh
Q psy9206          25 QMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGGDYAYILVAF  104 (190)
Q Consensus        25 ~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG~y~~~~~~~  104 (190)
                      +.||+++.++.++++++.++|+|++..++.....+|+.  .+++|++++++.++.+++++|+++++|++||.|+|+++.+
T Consensus         3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~--~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~   80 (444)
T 3gia_A            3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRN--LPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAI   80 (444)
T ss_dssp             CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGG--HHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH
T ss_pred             ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHh
Confidence            46899999999999999999999999988888888873  7889999999999999999999999999999999999999


Q ss_pred             Cch-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhCCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCchhHHHHHH
Q psy9206         105 GEL-PAFLRLWVALLIMRPTTQAIVALTFAQYAIKPFFPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELPDRAVLLL  183 (190)
Q Consensus       105 g~~-~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  183 (190)
                      ||+ .+...+|.+|+ .+....+.....+++++.. +++. .++.++..++..+++++++ .+|...  .+..++.+.++
T Consensus        81 G~~~~~g~~~~~~~~-~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~in~~g--~~~~~~~~~~~  154 (444)
T 3gia_A           81 GDNIITGALSILLWM-SYVISIALFAKGFAGYFLP-LINA-PINTFNIAITEIGIVAFFT-ALNFFG--SKAVGRAEFFI  154 (444)
T ss_dssp             CSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HTTC-CCCHHHHHHHHHHHHHHHH-HHHHHT--HHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhCC-CCchHHHHHHHHHHHHHHH-HHHHHh--HHHHHHHHHHH
Confidence            996 34455799888 5667888899999999986 5454 3344555555555555555 566654  33446666554


Q ss_pred             HH
Q psy9206         184 AA  185 (190)
Q Consensus       184 ~~  185 (190)
                      +.
T Consensus       155 ~~  156 (444)
T 3gia_A          155 VL  156 (444)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.72  E-value=6.5e-17  Score=138.79  Aligned_cols=152  Identities=16%  Similarity=0.145  Sum_probs=102.6

Q ss_pred             ccccccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHH-HHHHHHHHHhhh--hcccCcchH
Q psy9206          21 PIKVQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLS-TIGALCYAELGT--CISRSGGDY   97 (190)
Q Consensus        21 ~~~~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~-~~~~~~~aEl~s--~~P~~GG~y   97 (190)
                      ++++++||++++++.++++++.++|  ++..+.  ....|+.  .++.++++++.. ++.+++++|+++  ++| +||+|
T Consensus         4 ~~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~~G~~--~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y   76 (511)
T 4djk_A            4 SVQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FATSGFS--LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVF   76 (511)
T ss_dssp             --------CCCHHHHHHHTGGGGCC--GGGHHH--HHTTTTH--HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHH
T ss_pred             cccCccCccccHHHHHHHHHHHHHh--hchhHH--HHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChh
Confidence            3456789999999999999999975  443332  3344432  344456666654 569999999999  999 99999


Q ss_pred             hhHHHHhCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh-CCCCCCcHHHHHHHHHHHHHHHHhhhhhhcCCCCch
Q psy9206          98 AYILVAFGELPAFLRLWVALLIMRPTTQAIVALTFAQYAIKPF-FPDSELPDRAVLLLAAACLCKNGNAIKPFFPDSELP  176 (190)
Q Consensus        98 ~~~~~~~g~~~~~~~gw~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  176 (190)
                      +|+++.+||+.||+++|.+|+ .+....++.....+.++...+ .|+.+++.|...++..+++++++ .+|....|.  .
T Consensus        77 ~~~~~~~g~~~g~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~in~~g~~~--~  152 (511)
T 4djk_A           77 AWVSNTLGPRWGFAAISFGYL-QIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALA-LTQFGGTKY--T  152 (511)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHH-HHHHTCSSS--H
T ss_pred             hhHHhhcCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHH-HHHHhChHH--H
Confidence            999999999999999999999 555666777777777776422 56666666777777777777666 677775443  3


Q ss_pred             hHHHHHH
Q psy9206         177 DRAVLLL  183 (190)
Q Consensus       177 ~~~~~~~  183 (190)
                      .+.|.+.
T Consensus       153 ~~~~~~~  159 (511)
T 4djk_A          153 ARIAKVG  159 (511)
T ss_dssp             HHHTHHH
T ss_pred             HHHHHHH
Confidence            5555544

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=96.25  E-value=0.11  Score=44.25  Aligned_cols=91  Identities=13%  Similarity=0.058  Sum_probs=49.0

Q ss_pred             cccccccchhHHHHHHhhhhhcchhccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcc-hHhhHHH
Q psy9206          24 VQMKRKITLLGGVSIIVGCIIGSGIFVSPAGVLAETQSVGLSIVIWTVCGLLSTIGALCYAELGTCISRSGG-DYAYILV  102 (190)
Q Consensus        24 ~~l~r~l~~~~~~~~~~~~~ig~g~~~~~~~~~~~~G~~g~~~~~~li~~i~~~~~~~~~aEl~s~~P~~GG-~y~~~~~  102 (190)
                      ++-+|+.++++.+.+=++..+..+.+....... . |-.  ..-+++...+..+......+-++..-|+.|- +...++.
T Consensus        21 p~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~-~-GLs--~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~   96 (501)
T 2jln_A           21 RYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT-S-SFQ--VWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARM   96 (501)
T ss_dssp             CGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT-T-TSC--HHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTT
T ss_pred             ChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-c-CcC--HHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHh
Confidence            334577899999988777765444443322222 2 321  1222333333333333334444444444344 4446677


Q ss_pred             HhCchhHHHHHHHHHH
Q psy9206         103 AFGELPAFLRLWVALL  118 (190)
Q Consensus       103 ~~g~~~~~~~gw~~~~  118 (190)
                      .||++.+.+......+
T Consensus        97 ~FG~~Gs~i~~ll~~i  112 (501)
T 2jln_A           97 PFGIRGSLIPITLKAL  112 (501)
T ss_dssp             TSCTTTTHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHH
Confidence            8999888887766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00