Psyllid ID: psy9210

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
MPSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY
cccccEEEEEEcccccccHHHHHHHHHccccEEEEccccccccccccEEEEccccccccccccccccEEEEEEcccccEEEccccccccccccccccccHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEEEccc
cccccEEEEEEcccccccHHHHHHHHHccccEEEcccccccccccHEEEccccccccccccccccccEEEEEEEccccEEEccccccccccEcccccccHHHHHHHHHHccHHHHHHccHHHHHHHHcccccccHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccEEEEEEEc
MPSNLKVAVVCSSNMNRSMEAHAYLSkkgvdvksfgtgdkkpqqwESVVIFHCCDfcseliplfFHKVFVFQISVNLFFQSItgtamdkpnvydfhTTTYEDIYQDLMNKDKAFYTRNGLLHMLERnkriklkpekfqeskdkfdiIITCEERVYDQVLEHFDNQmislentpvhlinidiqdnqEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKcsrpllhtilfy
MPSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLernkriklkpekfqeskdkfdIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFeekcsrpllhtilfy
MPSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY
*******************************V**********QQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLK*******KDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILF*
***NLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY
MPSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY
**SNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKxxxxxxxxxxxxxxxxxxxxxPLLHTILFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query234 2.2.26 [Sep-21-2011]
Q6PC19194 RNA polymerase II subunit yes N/A 0.820 0.989 0.515 3e-59
Q5ZJQ7194 RNA polymerase II subunit yes N/A 0.824 0.994 0.523 3e-58
Q17QI2194 RNA polymerase II subunit yes N/A 0.824 0.994 0.523 4e-58
Q4KLK9194 RNA polymerase II subunit yes N/A 0.824 0.994 0.519 5e-58
Q9NP77194 RNA polymerase II subunit yes N/A 0.824 0.994 0.519 5e-58
Q9CY97194 RNA polymerase II subunit yes N/A 0.824 0.994 0.514 2e-57
Q6NRQ7194 RNA polymerase II subunit N/A N/A 0.824 0.994 0.514 3e-57
A6NK39194 Putative RNA polymerase I no N/A 0.811 0.979 0.430 1e-41
A8MSY0194 Putative RNA polymerase I no N/A 0.811 0.979 0.430 2e-41
A6NG73194 Putative RNA polymerase I no N/A 0.811 0.979 0.417 2e-39
>sp|Q6PC19|SSU72_DANRE RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1 Back     alignment and function desciption
 Score =  228 bits (581), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/233 (51%), Positives = 146/233 (62%), Gaps = 41/233 (17%)

Query: 2   PSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELI 61
           P  L+VAVVCSSN NRSMEAH  LSK+G DV+SFGTG                       
Sbjct: 3   PHPLRVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHV-------------------- 42

Query: 62  PLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLL 121
                               + G A DKPN+YDF  TTYE +Y DL+ KDK  YT+NG+L
Sbjct: 43  -------------------KLPGPAPDKPNIYDF-KTTYEQMYNDLVRKDKELYTQNGIL 82

Query: 122 HMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDI 181
           HML+RNKRIK +PE+FQ  +D+FD++ITCEERVYDQVLE   N        PVH+IN+DI
Sbjct: 83  HMLDRNKRIKSRPERFQSCRDQFDLVITCEERVYDQVLEDL-NSREQESFQPVHVINVDI 141

Query: 182 QDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
           QDN EEATLGAFL  EL       +D++NE+DE++QEFEEK  RP LH++ FY
Sbjct: 142 QDNHEEATLGAFLICELCQCIQHTDDMENEMDELLQEFEEKSHRPFLHSVCFY 194
May be involved in the C-terminal domain of RNA polymerase II dephosphorylation, RNA processing and termination.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q5ZJQ7|SSU72_CHICK RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1 Back     alignment and function description
>sp|Q17QI2|SSU72_BOVIN RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Bos taurus GN=SSU72 PE=2 SV=1 Back     alignment and function description
>sp|Q4KLK9|SSU72_RAT RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1 Back     alignment and function description
>sp|Q9NP77|SSU72_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1 Back     alignment and function description
>sp|Q9CY97|SSU72_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=2 SV=1 Back     alignment and function description
>sp|Q6NRQ7|SSU72_XENLA RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Xenopus laevis GN=ssu72 PE=2 SV=1 Back     alignment and function description
>sp|A6NK39|S72L1_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 1 OS=Homo sapiens PE=3 SV=1 Back     alignment and function description
>sp|A8MSY0|S72L2_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2 OS=Homo sapiens PE=3 SV=1 Back     alignment and function description
>sp|A6NG73|S72L3_HUMAN Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 3 OS=Homo sapiens PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
242023614195 protein SSU72, putative [Pediculus human 0.824 0.989 0.572 3e-66
383855882195 PREDICTED: RNA polymerase II subunit A C 0.820 0.984 0.549 2e-64
307193223195 RNA polymerase II subunit A C-terminal d 0.820 0.984 0.545 5e-64
332024507195 RNA polymerase II subunit A C-terminal d 0.820 0.984 0.540 2e-63
307173644195 RNA polymerase II subunit A C-terminal d 0.820 0.984 0.545 2e-63
340717362195 PREDICTED: RNA polymerase II subunit A C 0.820 0.984 0.540 2e-63
48139949195 PREDICTED: RNA polymerase II subunit A C 0.824 0.989 0.538 1e-62
321479422192 hypothetical protein DAPPUDRAFT_39456 [D 0.820 1.0 0.521 2e-62
193636719194 PREDICTED: RNA polymerase II subunit A C 0.816 0.984 0.525 2e-62
241177326193 LDL receptor-related protein, putative [ 0.824 1.0 0.525 3e-62
>gi|242023614|ref|XP_002432227.1| protein SSU72, putative [Pediculus humanus corporis] gi|212517624|gb|EEB19489.1| protein SSU72, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 163/236 (69%), Gaps = 43/236 (18%)

Query: 1   MPS--NLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCS 58
           MPS  NLK+AV CSSNMNRSMEAHA+LSKKG  VKSFGTGDK                  
Sbjct: 1   MPSLNNLKIAVSCSSNMNRSMEAHAFLSKKGFFVKSFGTGDK------------------ 42

Query: 59  ELIPLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRN 118
                                  + GTA DKPNVYDF   +Y++IYQDL+NKDK FYT+N
Sbjct: 43  ---------------------VKLPGTAPDKPNVYDF-GCSYDEIYQDLLNKDKTFYTQN 80

Query: 119 GLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLIN 178
           GLLHML+RN+RIKL PE+FQ   +KFDIIITCEERVYDQV+E  +N+  S ENTPVH+IN
Sbjct: 81  GLLHMLDRNRRIKLGPERFQSCMEKFDIIITCEERVYDQVIEALENRP-STENTPVHIIN 139

Query: 179 IDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
           IDIQDN EEAT+GAFL  EL++   + +DLDN+IDE++ +FE KC R +LH ++FY
Sbjct: 140 IDIQDNHEEATIGAFLLCELVTKLSQSDDLDNDIDELLHDFEAKCDRAILHCVMFY 195

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383855882|ref|XP_003703439.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307193223|gb|EFN76114.1| RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332024507|gb|EGI64705.1| RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307173644|gb|EFN64495.1| RNA polymerase II subunit A C-terminal domain phosphatase SSU72 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340717362|ref|XP_003397153.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Bombus terrestris] gi|350413377|ref|XP_003489976.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|48139949|ref|XP_397061.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Apis mellifera] gi|380015137|ref|XP_003691566.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Apis florea] Back     alignment and taxonomy information
>gi|321479422|gb|EFX90378.1| hypothetical protein DAPPUDRAFT_39456 [Daphnia pulex] Back     alignment and taxonomy information
>gi|193636719|ref|XP_001949489.1| PREDICTED: RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|241177326|ref|XP_002399947.1| LDL receptor-related protein, putative [Ixodes scapularis] gi|215495225|gb|EEC04866.1| LDL receptor-related protein, putative [Ixodes scapularis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query234
FB|FBgn0031054195 Ssu72 "Ssu72 ortholog" [Drosop 0.645 0.774 0.575 1.1e-60
ZFIN|ZDB-GENE-040426-1689194 ssu72 "SSU72 RNA polymerase II 0.641 0.773 0.597 1.8e-60
UNIPROTKB|Q5ZJQ7194 SSU72 "RNA polymerase II subun 0.641 0.773 0.610 9.9e-60
UNIPROTKB|Q17QI2194 SSU72 "RNA polymerase II subun 0.641 0.773 0.610 9.9e-60
UNIPROTKB|Q9NP77194 SSU72 "RNA polymerase II subun 0.641 0.773 0.603 1.3e-59
RGD|1307854194 Ssu72 "SSU72 RNA polymerase II 0.641 0.773 0.603 1.3e-59
UNIPROTKB|E2QZ84194 SSU72 "Uncharacterized protein 0.641 0.773 0.603 2e-59
MGI|MGI:1916241194 Ssu72 "Ssu72 RNA polymerase II 0.641 0.773 0.597 5.4e-59
UNIPROTKB|F1RJC9195 SSU72 "Uncharacterized protein 0.641 0.769 0.606 6.9e-59
UNIPROTKB|J9NXK3194 J9NXK3 "Uncharacterized protei 0.641 0.773 0.597 7.8e-58
FB|FBgn0031054 Ssu72 "Ssu72 ortholog" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 488 (176.8 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
 Identities = 88/153 (57%), Positives = 125/153 (81%)

Query:    82 ITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESK 141
             + G A DKPNVY+F T  YEDIY+DL +KDK FYT+NGLLHML+RN+RIK  PE+FQ++K
Sbjct:    45 LPGMAFDKPNVYEFGTK-YEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTK 103

Query:   142 DKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSM 201
             ++FDII+T EERVYD V+ H ++ M S++N PVH++N+D+ DN E+A +GAF+ +++++M
Sbjct:   104 EQFDIIVTVEERVYDLVVMHMES-MESVDNRPVHVLNVDVVDNAEDALMGAFVITDMINM 162

Query:   202 FIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
               K  DLDN+IDE++QEFEE+  R +LH++LFY
Sbjct:   163 MAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 195
GO:0005634 "nucleus" evidence=IEA
GO:0006397 "mRNA processing" evidence=IEA
GO:0016791 "phosphatase activity" evidence=IDA
GO:0070940 "dephosphorylation of RNA polymerase II C-terminal domain" evidence=IDA
GO:0008420 "CTD phosphatase activity" evidence=IDA
ZFIN|ZDB-GENE-040426-1689 ssu72 "SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJQ7 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q17QI2 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NP77 SSU72 "RNA polymerase II subunit A C-terminal domain phosphatase SSU72" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307854 Ssu72 "SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZ84 SSU72 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1916241 Ssu72 "Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJC9 SSU72 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NXK3 J9NXK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q75E60SSU72_ASHGO3, ., 1, ., 3, ., 1, 60.35510.82470.6868yesN/A
Q6CQ61SSU72_KLULA3, ., 1, ., 3, ., 1, 60.35260.81620.9227yesN/A
P0CR76SSU72_CRYNJ3, ., 1, ., 3, ., 1, 60.46100.64520.8074yesN/A
Q6BYP7SSU72_DEBHA3, ., 1, ., 3, ., 1, 60.33200.80340.8430yesN/A
P53538SSU72_YEAST3, ., 1, ., 3, ., 1, 60.37750.81620.9271yesN/A
Q17QI2SSU72_BOVIN3, ., 1, ., 3, ., 1, 60.52340.82470.9948yesN/A
Q6FMU7SSU72_CANGA3, ., 1, ., 3, ., 1, 60.39890.67090.7696yesN/A
Q9NP77SSU72_HUMAN3, ., 1, ., 3, ., 1, 60.51910.82470.9948yesN/A
Q558Z3SSU72_DICDI3, ., 1, ., 3, ., 1, 60.36320.81620.8925yesN/A
Q5ZJQ7SSU72_CHICK3, ., 1, ., 3, ., 1, 60.52340.82470.9948yesN/A
Q9CY97SSU72_MOUSE3, ., 1, ., 3, ., 1, 60.51480.82470.9948yesN/A
O42868SSU72_SCHPO3, ., 1, ., 3, ., 1, 60.36750.81620.9695yesN/A
Q6NRQ7SSU72_XENLA3, ., 1, ., 3, ., 1, 60.51480.82470.9948N/AN/A
Q2UPU5SSU72_ASPOR3, ., 1, ., 3, ., 1, 60.34660.76060.6793yesN/A
Q6C195SSU72_YARLI3, ., 1, ., 3, ., 1, 60.36900.81620.9896yesN/A
Q4KLK9SSU72_RAT3, ., 1, ., 3, ., 1, 60.51910.82470.9948yesN/A
Q4WHY5SSU72_ASPFU3, ., 1, ., 3, ., 1, 60.33460.76060.6202yesN/A
Q6PC19SSU72_DANRE3, ., 1, ., 3, ., 1, 60.51500.82050.9896yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3.160.946
3rd Layer3.1.30.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
pfam04722193 pfam04722, Ssu72, Ssu72-like protein 5e-89
COG5211197 COG5211, SSU72, RNA polymerase II-interacting prot 6e-56
>gnl|CDD|218229 pfam04722, Ssu72, Ssu72-like protein Back     alignment and domain information 
 Score =  260 bits (667), Expect = 5e-89
 Identities = 110/234 (47%), Positives = 145/234 (61%), Gaps = 44/234 (18%)

Query: 4   NLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPL 63
            LK AVVC+SN NRSMEAH  L+K G +V+SFGTG                         
Sbjct: 1   KLKFAVVCASNQNRSMEAHKVLAKAGFNVRSFGTGSA----------------------- 37

Query: 64  FFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHM 123
                      V L      G ++DKPNVYDF  T Y++IY DL ++D+  YT+NGLLHM
Sbjct: 38  -----------VKL-----PGPSIDKPNVYDF-GTPYDEIYNDLESQDEELYTQNGLLHM 80

Query: 124 LERNKRIKLKPEKFQE-SKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQ 182
           L+RN+RIK  PE++Q+ ++ KFD++ITCEERV+D V+E   N+  SL N PVH+IN+DI+
Sbjct: 81  LDRNRRIKEAPERWQDNTELKFDVVITCEERVFDAVVEDLMNRGSSL-NQPVHVINVDIK 139

Query: 183 DNQEEATLGAFLASELMSMFIKC-EDLDNEIDEIMQEFEEKC-SRPLLHTILFY 234
           DN EEA +GA    +L  M     EDL++EIDEI+ EF+EK    PLL+T+ FY
Sbjct: 140 DNHEEAIIGAKAILDLAQMLEAASEDLEDEIDEILAEFQEKHPGLPLLYTVAFY 193

The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs. Length = 193
>gnl|CDD|227536 COG5211, SSU72, RNA polymerase II-interacting protein involved in transcription start site selection [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 234
PF04722195 Ssu72: Ssu72-like protein; InterPro: IPR006811 The 100.0
KOG2424|consensus195 100.0
COG5211197 SSU72 RNA polymerase II-interacting protein involv 100.0
COG0394139 Wzb Protein-tyrosine-phosphatase [Signal transduct 96.44
PRK13530133 arsenate reductase; Provisional 95.48
TIGR02691129 arsC_pI258_fam arsenate reductase (thioredoxin). T 95.23
PRK11391144 etp phosphotyrosine-protein phosphatase; Provision 93.73
PF01451138 LMWPc: Low molecular weight phosphotyrosine protei 92.97
PRK10126147 tyrosine phosphatase; Provisional 92.95
TIGR02689126 ars_reduc_gluta arsenate reductase, glutathione/gl 90.58
cd01523100 RHOD_Lact_B Member of the Rhodanese Homology Domai 89.24
cd00115141 LMWPc Substituted updates: Aug 22, 2001 88.47
smart00226140 LMWPc Low molecular weight phosphatase family. 88.44
COG0607110 PspE Rhodanese-related sulfurtransferase [Inorgani 85.43
PLN02160136 thiosulfate sulfurtransferase 83.91
cd0153495 4RHOD_Repeat_3 Member of the Rhodanese Homology Do 81.9
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle Back     alignment and domain information 
Probab=100.00  E-value=3.7e-105  Score=684.47  Aligned_cols=190  Identities=63%  Similarity=1.041  Sum_probs=168.3

Q ss_pred             CceEEEEecCCCccchHHHHHHhhCCCceeeccCCCCCCccccceeeeeccccccccccccccceeeeeeecccccccCC
Q psy9210           4 NLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQSIT   83 (234)
Q Consensus         4 ~lk~AvVCsSN~NRSMEAH~~L~k~G~~V~SfGTG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP   83 (234)
                      +||||||||||||||||||++|+|+||+|+|||||++|                                       |||
T Consensus         1 ~l~~avVCasN~NRSMEAH~~L~~~G~~V~SfGTGs~V---------------------------------------kLP   41 (195)
T PF04722_consen    1 KLRFAVVCASNQNRSMEAHNVLKKAGFNVRSFGTGSHV---------------------------------------KLP   41 (195)
T ss_dssp             -SEEEEEESSSSSHHHHHHHHHHHTT-EEEEEE-SSSE---------------------------------------EEE
T ss_pred             CceEEEEccCCCCcCHHHHHHHHHCCCceEeecCCCcc---------------------------------------cCC
Confidence            58999999999999999999999999999999999999                                       999


Q ss_pred             CCCCCCCceecCCCCcHHHHHHHHHhccHHHHhhcchhhhhhhcccCcCCCccccccCCC--ccEEEEecchhHHHHHHh
Q psy9210          84 GTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDK--FDIIITCEERVYDQVLEH  161 (234)
Q Consensus        84 G~a~dkPNvY~F~~TtY~~Iy~dL~~kD~~~Yt~NGlL~MLdRN~rIK~~PErfQe~~~~--fDvIiTcEERvyD~V~Ed  161 (234)
                      |||+|+||||+|| |||++||+||++||++|||+||||+||+||++||++|||||++++.  |||||||||||||+|+||
T Consensus        42 Gps~d~PnvY~Fg-T~Y~~iy~dL~~kd~~lY~~NGlL~ML~RN~~iK~~PERfQ~~~~~~~fDvIiTcEERvfD~Vved  120 (195)
T PF04722_consen   42 GPSIDKPNVYDFG-TPYDDIYNDLLRKDKELYTQNGLLHMLDRNRRIKPAPERFQDCKEKGKFDVIITCEERVFDQVVED  120 (195)
T ss_dssp             ESSTTCEEEE-TT-S-HHHHHHHHHHHHHHHHHHTSHHHHHHHHHCH-SS--BGGG-------SEEEESSHHHHHHHHHH
T ss_pred             CCCCCCCcccCCC-CcHHHHHHHHHHhCHHHHHHcCcHHHHhcCccccCCccchhcCCCCcceeEEEEechHHHHHHHHH
Confidence            9999999999999 9999999999999999999999999999999999999999999998  999999999999999999


Q ss_pred             HhhhcccCCCceeEEEEeecCCCHHHHhhhHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHHc-CCCceeeeccC
Q psy9210         162 FDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFI--KCEDLDNEIDEIMQEFEEKC-SRPLLHTILFY  234 (234)
Q Consensus       162 l~~~r~~~~~~pVHvINiDI~Dn~EeA~~Ga~~i~eL~~~l~--~~eDld~~ideil~~feek~-~r~~Lhtv~fY  234 (234)
                      |.+ |++.+++|||||||||+||||||++||++||+||++|+  +++|||++|++||++||+|+ ++|+|||||||
T Consensus       121 l~~-R~~~~~~pvHVINvDIkDnhEeA~~Ga~~ileLc~~l~~~~~~d~e~~i~~il~~fe~k~p~~~~Lhtv~fY  195 (195)
T PF04722_consen  121 LNS-REQETNQPVHVINVDIKDNHEEATIGAFLILELCQMLEEEASEDLEDEIDEILQEFEEKHPGRPLLHTVCFY  195 (195)
T ss_dssp             HHC-S--SS-EEEEEEEE---SSHHHHHHHHHHHHHHHHHHH--TSSSHHHHHHHHHHHHHHHH-T--EEEEEEEE
T ss_pred             HHh-ccccCCceEEEEEeeccCCHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHcCCCCceEEEecC
Confidence            999 99999999999999999999999999999999999999  99999999999999999999 89999999998

Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
>KOG2424|consensus Back     alignment and domain information
>COG5211 SSU72 RNA polymerase II-interacting protein involved in transcription start site selection [Transcription] Back     alignment and domain information
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13530 arsenate reductase; Provisional Back     alignment and domain information
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin) Back     alignment and domain information
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional Back     alignment and domain information
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity Back     alignment and domain information
>PRK10126 tyrosine phosphatase; Provisional Back     alignment and domain information
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type Back     alignment and domain information
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily Back     alignment and domain information
>cd00115 LMWPc Substituted updates: Aug 22, 2001 Back     alignment and domain information
>smart00226 LMWPc Low molecular weight phosphatase family Back     alignment and domain information
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02160 thiosulfate sulfurtransferase Back     alignment and domain information
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
3omw_A190 Crystal Structure Of Ssu72, An Essential Eukaryotic 5e-60
3o2s_B214 Crystal Structure Of The Human Symplekin-Ssu72 Comp 4e-59
3p9y_A198 Crystal Structure Of The Drosophila Melanogaster Ss 7e-59
3o2q_B214 Crystal Structure Of The Human Symplekin-Ssu72-Ctd 7e-58
3fdf_A195 Crystal Structure Of The Serine Phosphatase Of Rna 5e-57
>pdb|3OMW|A Chain A, Crystal Structure Of Ssu72, An Essential Eukaryotic Phosphatase Specific For The C-Terminal Domain Of Rna Polymerase Ii Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (578), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 114/230 (49%), Positives = 158/230 (68%), Gaps = 41/230 (17%)
Query: 5   LKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLF 64
           L VAVVCSSNMNRSMEAH +L+KKG +V+S+GTG++                        
Sbjct: 2   LAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGER------------------------ 37
Query: 65  FHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHML 124
                            + G A DKPNVY+F  T YEDIY+DL +KDK FYT+NGLLHML
Sbjct: 38  ---------------VKLPGMAFDKPNVYEF-GTKYEDIYRDLESKDKEFYTQNGLLHML 81
Query: 125 ERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDIQDN 184
           +RN+RIK  PE+FQ++K++FDII+T EERVYD V+ H ++ M S++N PVH++N+D+ DN
Sbjct: 82  DRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHMES-MESVDNRPVHVLNVDVVDN 140
Query: 185 QEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
            E+A +GAF+ +++++M  K  DLDN+IDE++QEFEE+  R +LH++LFY
Sbjct: 141 AEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 190
>pdb|3O2S|B Chain B, Crystal Structure Of The Human Symplekin-Ssu72 Complex Length = 214 Back     alignment and structure
>pdb|3P9Y|A Chain A, Crystal Structure Of The Drosophila Melanogaster Ssu72-Pctd Complex Length = 198 Back     alignment and structure
>pdb|3O2Q|B Chain B, Crystal Structure Of The Human Symplekin-Ssu72-Ctd Phosphopeptide Complex Length = 214 Back     alignment and structure
>pdb|3FDF|A Chain A, Crystal Structure Of The Serine Phosphatase Of Rna Polymerase Ii Ctd (Ssu72 Superfamily) From Drosophila Melanogaster. Orthorhombic Crystal Form. Northeast Structural Genomics Consortium Target Fr253. Length = 195 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query234
3p9y_A198 CG14216, LD40846P; phosphatase, CIS proline, LMW P 8e-91
3o2q_B214 RNA polymerase II subunit A C-terminal domain PHO 4e-90
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A Length = 198 Back     alignment and structure
 Score =  264 bits (677), Expect = 8e-91
 Identities = 116/233 (49%), Positives = 158/233 (67%), Gaps = 41/233 (17%)

Query: 2   PSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELI 61
           PS L VAVV SSNMNRSMEAH +L+KKG +V+S+GTG++                     
Sbjct: 7   PSKLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGER--------------------- 45

Query: 62  PLFFHKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLL 121
                        V L      G A DKPNVY+F  T YEDIY+DL +KDK FYT+NGLL
Sbjct: 46  -------------VKL-----PGMAFDKPNVYEF-GTKYEDIYRDLESKDKEFYTQNGLL 86

Query: 122 HMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEHFDNQMISLENTPVHLINIDI 181
           HML+RN+RIK  PE+FQ++K++FDII+T EERVYD V+ H    M S++N PVH++N+D+
Sbjct: 87  HMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMHM-ESMESVDNRPVHVLNVDV 145

Query: 182 QDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY 234
            +N E+A +GAF+ +++++M  K  DLDN+IDE++QEFEE+  R +LH++LFY
Sbjct: 146 VNNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY 198
>3o2q_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, scaffold, phosphatase, polymerase II CTD, CIS-P hydrolase; HET: SEP; 2.40A {Homo sapiens} PDB: 3o2s_B Length = 214 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
3p9y_A198 CG14216, LD40846P; phosphatase, CIS proline, LMW P 100.0
4h3k_B214 RNA polymerase II subunit A C-terminal domain PHO 100.0
3rof_A158 Low molecular weight protein-tyrosine-phosphatase; 97.32
1u2p_A163 Ptpase, low molecular weight protein-tyrosine- pho 97.1
1jl3_A139 Arsenate reductase; alpha-beta fold, PTP-loop, oxi 96.55
1jf8_A131 Arsenate reductase; ptpase I fold, P-loop, sulfini 96.49
2cwd_A161 Low molecular weight phosphotyrosine protein PHOS; 96.4
2wmy_A150 WZB, putative acid phosphatase WZB; hydrolase; 2.2 96.19
3n8i_A157 Low molecular weight phosphotyrosine protein PHOS; 96.12
1d1q_A161 Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-be 96.07
1y1l_A124 Arsenate reductase (ARSC); detoxification, cadmium 95.95
2fek_A167 Low molecular weight protein-tyrosine- phosphatase 95.89
2l17_A134 Synarsc, arsenate reductase; alpha/beta sandwich, 95.87
1p8a_A146 Protein tyrosine phosphatase; hydrolase; NMR {Trit 95.76
2wja_A168 Putative acid phosphatase WZB; hydrolase; 2.50A {E 95.73
3t38_A213 Arsenate reductase; low molecular weight tyrosine 95.2
3rh0_A148 Arsenate reductase; oxidoreductase; 1.72A {Coryneb 94.94
3jvi_A161 Protein tyrosine phosphatase; niaid, ssgcid, seatt 94.26
4etm_A173 LMPTP, low molecular weight protein-tyrosine-phosp 93.68
4egs_A180 Ribose 5-phosphate isomerase RPIB; tyrosine phosph 93.49
4etn_A184 LMPTP, low molecular weight protein-tyrosine-phosp 93.28
2gi4_A156 Possible phosphotyrosine protein phosphatase; low 92.39
3iwh_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 89.77
3foj_A100 Uncharacterized protein; protein SSP1007, structur 89.0
3gk5_A108 Uncharacterized rhodanese-related protein TVG08686 87.83
3eme_A103 Rhodanese-like domain protein; alpha-beta-alpha sa 86.85
3nhv_A144 BH2092 protein; alpha-beta protein, structural gen 86.8
3g5j_A134 Putative ATP/GTP binding protein; N-terminal domai 86.64
2jtq_A85 Phage shock protein E; solution structure rhodanes 86.21
1vee_A134 Proline-rich protein family; hypothetical protein, 85.36
1qxn_A137 SUD, sulfide dehydrogenase; polysulfide-sulfur tra 82.45
1wv9_A94 Rhodanese homolog TT1651; CDC25, phosphatase, sulf 81.45
3d1p_A139 Putative thiosulfate sulfurtransferase YOR285W; at 80.67
2fsx_A148 RV0390, COG0607: rhodanese-related sulfurtransfera 80.28
>3p9y_A CG14216, LD40846P; phosphatase, CIS proline, LMW PTP-like fold, RNA polymerase hydrolase; HET: N7P SEP SET IMD PG4; 2.10A {Drosophila melanogaster} PDB: 3fdf_A 3fmv_A 3omx_A 3omw_A Back     alignment and structure
Probab=100.00  E-value=4.4e-106  Score=690.38  Aligned_cols=192  Identities=59%  Similarity=1.029  Sum_probs=190.5

Q ss_pred             CCCceEEEEecCCCccchHHHHHHhhCCCceeeccCCCCCCccccceeeeeccccccccccccccceeeeeeeccccccc
Q psy9210           2 PSNLKVAVVCSSNMNRSMEAHAYLSKKGVDVKSFGTGDKKPQQWESVVIFHCCDFCSELIPLFFHKVFVFQISVNLFFQS   81 (234)
Q Consensus         2 ~s~lk~AvVCsSN~NRSMEAH~~L~k~G~~V~SfGTG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (234)
                      +++||||||||||||||||||++|+|+||+|+|||||++|                                       |
T Consensus         7 ~~~l~~avVCaSN~NRSMEaH~~L~k~G~~V~SfGTGs~V---------------------------------------r   47 (198)
T 3p9y_A            7 PSKLAVAVVDSSNMNRSMEAHNFLAKKGFNVRSYGTGERV---------------------------------------K   47 (198)
T ss_dssp             TTCCEEEEEESSSSSHHHHHHHHHHHTTCEEEEEECSSSE---------------------------------------E
T ss_pred             CCCceEEEEcCCCCcccHHHHHHHHhCCCceeecCCCcee---------------------------------------E
Confidence            4789999999999999999999999999999999999999                                       9


Q ss_pred             CCCCCCCCCceecCCCCcHHHHHHHHHhccHHHHhhcchhhhhhhcccCcCCCccccccCCCccEEEEecchhHHHHHHh
Q psy9210          82 ITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLLHMLERNKRIKLKPEKFQESKDKFDIIITCEERVYDQVLEH  161 (234)
Q Consensus        82 lPG~a~dkPNvY~F~~TtY~~Iy~dL~~kD~~~Yt~NGlL~MLdRN~rIK~~PErfQe~~~~fDvIiTcEERvyD~V~Ed  161 (234)
                      |||||+||||||+|| |||++||+||.+||+++||+||||+||+|||+||++|||||++++.|||||||||||||+|+||
T Consensus        48 LPGps~d~PNvY~Fg-T~Y~~iy~dL~~kd~~lY~~NGiL~MLdRNr~iK~~PERfQ~~~~~fDvIiTcEERvfD~Vved  126 (198)
T 3p9y_A           48 LPGMAFDKPNVYEFG-TKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQDTKEQFDIIVTVEERVYDLVVMH  126 (198)
T ss_dssp             ECCSSTTCCEEECTT-CCHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHCSSCCBGGGCCCCCSEEEESSHHHHHHHHHH
T ss_pred             cCCCCCCCCCccCCC-CcHHHHHHHHHHhhHHHHHHcCcHHHHhcCccccCCccchhccCCCcCEEEEeechhHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCceeEEEEeecCCCHHHHhhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHcCCCceeeeccC
Q psy9210         162 FDNQMISLENTPVHLINIDIQDNQEEATLGAFLASELMSMFIKCEDLDNEIDEIMQEFEEKCSRPLLHTILFY  234 (234)
Q Consensus       162 l~~~r~~~~~~pVHvINiDI~Dn~EeA~~Ga~~i~eL~~~l~~~eDld~~ideil~~feek~~r~~Lhtv~fY  234 (234)
                      |.+ |++.+++|||||||||+||||||++||++|||||++|++++|||++|++||++||+|++||+|||||||
T Consensus       127 L~~-R~~~~~~pVHViNvDIkDn~EeA~~Ga~~ileL~~~l~~~~d~e~~i~~il~~fe~~~~~~~Lhtv~fY  198 (198)
T 3p9y_A          127 MES-MESVDNRPVHVLNVDVVNNAEDALMGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY  198 (198)
T ss_dssp             HHT-SCCSSCCEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCCEEEEEEC
T ss_pred             HHh-cccCcCceEEEEEeeccCCHHHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHHHhcCCCceeeeecC
Confidence            999 999999999999999999999999999999999999999999999999999999999999999999999
>4h3k_B RNA polymerase II subunit A C-terminal domain PHO SSU72; heat repeat, phosphatase, RNA polymerase II, hydrolase; HET: SEP; 2.00A {Homo sapiens} PDB: 3o2q_B* 4h3h_B* 3o2s_B Back     alignment and structure
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus} Back     alignment and structure
>1u2p_A Ptpase, low molecular weight protein-tyrosine- phosphatase; hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 1u2q_A Back     alignment and structure
>1jl3_A Arsenate reductase; alpha-beta fold, PTP-loop, oxidoreductase; 1.60A {Bacillus subtilis} SCOP: c.44.1.1 PDB: 1z2d_A 1z2e_A 2ipa_B Back     alignment and structure
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A Back     alignment and structure
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus} Back     alignment and structure
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia coli} Back     alignment and structure
>3n8i_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, hydrolase, protein-ligand complex; HET: NLA; 1.50A {Homo sapiens} SCOP: c.44.1.1 PDB: 5pnt_A* 1xww_A 1bvh_A 1dg9_A* 1phr_A 1pnt_A 1z12_A 1z13_A 1c0e_A 2p4u_A Back     alignment and structure
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A* Back     alignment and structure
>1y1l_A Arsenate reductase (ARSC); detoxification, cadmium, oxidized form, structural genomics, PSI, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.44.1.1 Back     alignment and structure
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12} Back     alignment and structure
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A Back     alignment and structure
>1p8a_A Protein tyrosine phosphatase; hydrolase; NMR {Tritrichomonas foetus} SCOP: c.44.1.1 Back     alignment and structure
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli} Back     alignment and structure
>3t38_A Arsenate reductase; low molecular weight tyrosine phosphatase fold, reduction of to arsenite, oxidoreductase; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum} Back     alignment and structure
>3jvi_A Protein tyrosine phosphatase; niaid, ssgcid, seattle structural genomics center for infect disease, parasitic protozoan, dysentery; 1.80A {Entamoeba histolytica} PDB: 3js5_A* 3ily_A 3ido_A* Back     alignment and structure
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis} Back     alignment and structure
>4egs_A Ribose 5-phosphate isomerase RPIB; tyrosine phosphatase, dephosphorylation, hydrolase; 2.30A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A Back     alignment and structure
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni} Back     alignment and structure
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A Back     alignment and structure
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Back     alignment and structure
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Back     alignment and structure
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Back     alignment and structure
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Back     alignment and structure
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Back     alignment and structure
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Back     alignment and structure
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Back     alignment and structure
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Back     alignment and structure
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query234
d1p8aa_146 Tyrosine phosphatase {Tritrichomonas foetus [TaxId 97.83
d1dg9a_157 Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 991 97.35
d1d1qa_159 Tyrosine phosphatase {Baker's yeast (Saccharomyces 96.45
d1jf8a_130 Arsenate reductase ArsC {Staphylococcus aureus [Ta 95.76
d1y1la_124 Arsenate reductase ArsC {Archaeoglobus fulgidus [T 94.25
d1qxna_137 Polysulfide-sulfur transferase (sulfide dehydrogen 80.1
>d1p8aa_ c.44.1.1 (A:) Tyrosine phosphatase {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Tyrosine phosphatase
species: Tritrichomonas foetus [TaxId: 5724]

Probab=97.83  E-value=2e-05  Score=58.25  Aligned_cols=106  Identities=21%  Similarity=0.327  Sum_probs=74.5

Q ss_pred             CCceEEEEecCCCccchHHHHHHhhC---CCceeeccCCC------------------------CCCcc-------ccce
Q psy9210           3 SNLKVAVVCSSNMNRSMEAHAYLSKK---GVDVKSFGTGD------------------------KKPQQ-------WESV   48 (234)
Q Consensus         3 s~lk~AvVCsSN~NRSMEAH~~L~k~---G~~V~SfGTG~------------------------~v~~~-------~~~~   48 (234)
                      .+.+|-+||..|..||--|+++|++.   .+.|.|-||..                        +.+++       |-.+
T Consensus         3 ~k~~VLFVC~gN~cRSpmAEai~~~~~~~~~~v~SAg~~~~~~g~~~~~~a~~~l~~~gi~~~~h~sr~l~~~~~~~~Dl   82 (146)
T d1p8aa_           3 EKKAVLFVCLGNICRSPACEGICRDMVGDKLIIDSAATSGFHVGQSPDTRSQKVCKSNGVDISKQRARQITKADFSKFDV   82 (146)
T ss_dssp             CCCCEEEESSSSCSSSTTHHHHHHHHHSSCSSCEEECSCTTSCSCSCTHHHHHHHHHHSCCCCCCCCCCCCSHHHHSCSE
T ss_pred             CCCEEEEEECCcHHHHHHHHHHHHHhccCCceEEeEEecccccCCCCchhHHHHHHHhCcchhhhccccccHHHhhhccc
Confidence            46799999999999999999999874   56788888732                        23333       3345


Q ss_pred             eeeeccccccccccccc----cceeeeeeecccccccCCCCCCCCCceecCCCCcHHHHHHHHHhccHHHHhhcchh
Q psy9210          49 VIFHCCDFCSELIPLFF----HKVFVFQISVNLFFQSITGTAMDKPNVYDFHTTTYEDIYQDLMNKDKAFYTRNGLL  121 (234)
Q Consensus        49 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lPG~a~dkPNvY~F~~TtY~~Iy~dL~~kD~~~Yt~NGlL  121 (234)
                      |+.-|+.-..++.++|-    +|++.|          -|...++.|  | +++.-|++.|+.+...=+.|-++||||
T Consensus        83 Il~M~~~~~~~l~~~~p~~~~~~~~~~----------~~~~~I~DP--y-~~~~~f~~~~~~I~~~i~~ll~~~~~~  146 (146)
T d1p8aa_          83 IAALDQSILSDINSMKPSNCRAKVVLF----------NPPNGVDDP--Y-YSSDGFPTMFASISKEMKPFLTEHGLI  146 (146)
T ss_dssp             EEESSHHHHHHHHHHCCSSCSCEEEEC----------SCTTSSCCC--S-SSSSSHHHHHHHHHHTTHHHHHHHTCC
T ss_pred             hhhccHHHHHHHHhhcccccceEEEec----------CCCCCCCCC--C-CCchHHHHHHHHHHHHHHHHHHHcCCC
Confidence            66666665555555543    344432          133445666  5 343459999999999999999999986
>d1dg9a_ c.44.1.1 (A:) Tyrosine phosphatase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1d1qa_ c.44.1.1 (A:) Tyrosine phosphatase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1y1la_ c.44.1.1 (A:) Arsenate reductase ArsC {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Back     information, alignment and structure