Psyllid ID: psy9220

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460----
MSLFRPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHcccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHcccHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccccccccEEEEEEcccccEEEEcccEEEEEccccccEEEEEEEEccccccccccccEEEEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHccccc
ccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHccccccccccHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHccHHHHHHHcHHHccccccEEEEccEccEcccHHHcccEEEEccEccEcccccccccEEEEEccccEEEEEccEEEEEccccccEEEEEEEEccccccccccEEEEEEEccccccccHHEEEEEEEccccccccccccEEEEEEEEcccccEEEcccccccccccccccEEEEcccEccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccc
mslfrpllrsystkfnwedalNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRlgilgctlrgygcagashisgglVAREIERVDSGYRSMYSVQSSLVMGAIDkygsdkqkakylpelakgnligcfgltepnagsdvanmqtrcfgltepnagsdvanmqtrakydpssnsyiitgsktwissapladLCILwakcedpthgpqnpqirgfiiekdtpgapladLCILWAkcedathgpqnpqirgfiiekdtpgyetsvikgkfglrasvtgsisldnvRVSQDQMLLLANSykapftllnsarYGIAWGVLGAAEFCFSMARSYMLDRvqfnkplaanqipqlKLANMLTDISLALVSCCqvgrlkesnldtpeMISILKRNNCAKALDIARNARDmlggngisdeYHVIRHMNnlevvntyegtSDIHALILGRAITGIQAF
mslfrpllrsystkfnwedaLNISSLLTQEEKLLRDSVKSFCDAVLHPkivedfrhetSDVRAIYAEFGRLGILGCTLRGYGCAgashisgglvAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLtepnagsdvaNMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLkesnldtpemiSILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF
MSLFRPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF
*****PLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGL***********************SYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGI***
***************NWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQ*F
MSLFRPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF
*SLFRPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF
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MSLFRPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query464 2.2.26 [Sep-21-2011]
Q92947438 Glutaryl-CoA dehydrogenas yes N/A 0.851 0.901 0.521 1e-128
Q2KHZ9438 Glutaryl-CoA dehydrogenas yes N/A 0.836 0.885 0.534 1e-128
P81140408 Glutaryl-CoA dehydrogenas yes N/A 0.846 0.963 0.529 1e-127
Q60759438 Glutaryl-CoA dehydrogenas yes N/A 0.834 0.883 0.528 1e-127
Q8HXX8438 Glutaryl-CoA dehydrogenas N/A N/A 0.851 0.901 0.515 1e-127
Q54R47420 Glutaryl-CoA dehydrogenas yes N/A 0.840 0.928 0.498 1e-119
Q20772409 Probable glutaryl-CoA deh yes N/A 0.849 0.963 0.475 1e-114
Q96329436 Acyl-coenzyme A oxidase 4 yes N/A 0.823 0.876 0.309 2e-51
P45954432 Short/branched chain spec no N/A 0.790 0.849 0.281 3e-37
Q5RF40432 Short/branched chain spec no N/A 0.790 0.849 0.279 8e-37
>sp|Q92947|GCDH_HUMAN Glutaryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=GCDH PE=1 SV=1 Back     alignment and function desciption
 Score =  460 bits (1183), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/458 (52%), Positives = 302/458 (65%), Gaps = 63/458 (13%)

Query: 7   LLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYA 66
           L +S   +F+W+D L +   LT +E L+RD+ +++C   L P+I+   R+E    R I +
Sbjct: 40  LAKSSRPEFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIIS 98

Query: 67  EFGRLGILGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSD 126
           E G LG+LG T++GYGCAG S ++ GL+ARE+ERVDSGYRS  SVQSSLVM  I  YGS+
Sbjct: 99  EMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSE 158

Query: 127 KQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDP 186
           +Q+ KYLP+LAKG L+GCFGLT                   EPN+GSD ++M+TRA Y+ 
Sbjct: 159 EQRQKYLPQLAKGELLGCFGLT-------------------EPNSGSDPSSMETRAHYNS 199

Query: 187 SSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCI 246
           S+ SY + G+KTWI+++P+A                                    DL +
Sbjct: 200 SNKSYTLNGTKTWITNSPMA------------------------------------DLFV 223

Query: 247 LWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQM 306
           +WA+CED         IRGF++EK   G     I+GKF LRAS TG I +D V V ++ +
Sbjct: 224 VWARCEDGC-------IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENV 276

Query: 307 LLLANSYKAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKL 366
           L  A+S   PF  LN+ARYGIAWGVLGA+EFC   AR Y LDR+QF  PLA NQ+ Q KL
Sbjct: 277 LPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKL 336

Query: 367 ANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISD 426
           A+MLT+I+L L +C Q+GRLK+ +   PEM+S+LKRNNC KALDIAR ARDMLGGNGISD
Sbjct: 337 ADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISD 396

Query: 427 EYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
           EYHVIRH  NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 397 EYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAF 434
Catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and CO(2) in the degradative pathway of L-lysine, L-hydroxylysine, and L-tryptophan metabolism. It uses electron transfer flavoprotein as its electron acceptor. Isoform Short is inactive.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 3EC: .EC: 9EC: 9EC: .EC: 7
>sp|Q2KHZ9|GCDH_BOVIN Glutaryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=GCDH PE=2 SV=1 Back     alignment and function description
>sp|P81140|GCDH_PIG Glutaryl-CoA dehydrogenase, mitochondrial (Fragment) OS=Sus scrofa GN=GCDH PE=1 SV=1 Back     alignment and function description
>sp|Q60759|GCDH_MOUSE Glutaryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Gcdh PE=2 SV=2 Back     alignment and function description
>sp|Q8HXX8|GCDH_MACFA Glutaryl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=GCDH PE=2 SV=1 Back     alignment and function description
>sp|Q54R47|GCDH_DICDI Glutaryl-CoA dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=gcdh PE=3 SV=1 Back     alignment and function description
>sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=F54D5.7 PE=1 SV=1 Back     alignment and function description
>sp|Q96329|ACOX4_ARATH Acyl-coenzyme A oxidase 4, peroxisomal OS=Arabidopsis thaliana GN=ACX4 PE=1 SV=1 Back     alignment and function description
>sp|P45954|ACDSB_HUMAN Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADSB PE=1 SV=1 Back     alignment and function description
>sp|Q5RF40|ACDSB_PONAB Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=ACADSB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
158296551415 AGAP008501-PA [Anopheles gambiae str. PE 0.838 0.937 0.531 1e-131
195577044419 GD22569 [Drosophila simulans] gi|1941903 0.868 0.961 0.516 1e-131
432871288440 PREDICTED: glutaryl-CoA dehydrogenase, m 0.857 0.904 0.509 1e-130
148225687440 glutaryl-CoA dehydrogenase [Xenopus laev 0.838 0.884 0.524 1e-130
157136755421 acyl-coa dehydrogenase [Aedes aegypti] g 0.838 0.923 0.526 1e-130
195471768419 GE18434 [Drosophila yakuba] gi|194174275 0.868 0.961 0.514 1e-130
19920834419 CG9547 [Drosophila melanogaster] gi|1948 0.868 0.961 0.514 1e-130
157107100421 acyl-coa dehydrogenase [Aedes aegypti] g 0.838 0.923 0.526 1e-130
195343044419 GM17931 [Drosophila sechellia] gi|194132 0.868 0.961 0.514 1e-130
348511159440 PREDICTED: glutaryl-CoA dehydrogenase, m 0.846 0.893 0.513 1e-130
>gi|158296551|ref|XP_316942.3| AGAP008501-PA [Anopheles gambiae str. PEST] gi|157014764|gb|EAA12875.3| AGAP008501-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/450 (53%), Positives = 303/450 (67%), Gaps = 61/450 (13%)

Query: 15  FNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGIL 74
           F+WED LN+ S L ++E  +RDS +++C+  L  +++E  RHE    + I  E G  G+L
Sbjct: 26  FDWEDPLNLESQLKEDEIAIRDSFRAYCEDKLLSRVIEANRHEVFH-KEIMQELGSFGVL 84

Query: 75  GCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLP 134
           GCT++GYGCAG S+++ GL+ RE+ER+DSGYRS +SVQSSL MGAI  YGSD QK KYLP
Sbjct: 85  GCTIKGYGCAGVSNVAYGLLTREVERIDSGYRSAFSVQSSLCMGAIYDYGSDAQKEKYLP 144

Query: 135 ELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIIT 194
            LA+G LIGCFGLTEPN                    GSD ++M+TRA +DP + +Y+++
Sbjct: 145 RLARGELIGCFGLTEPN-------------------HGSDPSSMETRAVHDPKTKTYVLS 185

Query: 195 GSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDA 254
           GSKTWI+++P+AD+CI+W K ED        ++RGFI+++   G  LA            
Sbjct: 186 GSKTWITNSPIADICIVWGKTED-------GKVRGFIVDRAESGEGLA------------ 226

Query: 255 THGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYK 314
                                 T  I+GKF LRAS TG I +D VR+ +D +L   +  +
Sbjct: 227 ----------------------TPRIEGKFSLRASATGMILMDEVRIPEDNLLPNVSGMR 264

Query: 315 APFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDIS 374
            PF  LN+ARYGIAWG LGAAE C  +AR Y LDR QF KPLAANQ+ Q K+A+MLT+IS
Sbjct: 265 GPFGCLNNARYGIAWGALGAAESCLKVARGYTLDRKQFKKPLAANQLMQKKMADMLTEIS 324

Query: 375 LALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHM 434
           L L +C  VGRLK+  L TPEMIS+LKRNN  KALDIAR ARDMLGGNGI+DEYH+IRH+
Sbjct: 325 LGLAACLHVGRLKDQKLHTPEMISMLKRNNAGKALDIARVARDMLGGNGIADEYHIIRHV 384

Query: 435 NNLEVVNTYEGTSDIHALILGRAITGIQAF 464
            NLE VNTYEGT DIHALILGRAITG+QAF
Sbjct: 385 MNLEAVNTYEGTHDIHALILGRAITGLQAF 414

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195577044|ref|XP_002078383.1| GD22569 [Drosophila simulans] gi|194190392|gb|EDX03968.1| GD22569 [Drosophila simulans] Back     alignment and taxonomy information
>gi|432871288|ref|XP_004071893.1| PREDICTED: glutaryl-CoA dehydrogenase, mitochondrial-like [Oryzias latipes] Back     alignment and taxonomy information
>gi|148225687|ref|NP_001086623.1| glutaryl-CoA dehydrogenase [Xenopus laevis] gi|50603795|gb|AAH77194.1| Gcdh-prov protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|157136755|ref|XP_001663829.1| acyl-coa dehydrogenase [Aedes aegypti] gi|108869864|gb|EAT34089.1| AAEL013642-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195471768|ref|XP_002088174.1| GE18434 [Drosophila yakuba] gi|194174275|gb|EDW87886.1| GE18434 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|19920834|ref|NP_609040.1| CG9547 [Drosophila melanogaster] gi|194862544|ref|XP_001970027.1| GG23615 [Drosophila erecta] gi|7297127|gb|AAF52395.1| CG9547 [Drosophila melanogaster] gi|16197809|gb|AAL13534.1| GH06693p [Drosophila melanogaster] gi|190661894|gb|EDV59086.1| GG23615 [Drosophila erecta] gi|220944996|gb|ACL85041.1| CG9547-PA [synthetic construct] gi|220954906|gb|ACL89996.1| CG9547-PA [synthetic construct] Back     alignment and taxonomy information
>gi|157107100|ref|XP_001649622.1| acyl-coa dehydrogenase [Aedes aegypti] gi|108868733|gb|EAT32958.1| AAEL014797-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195343044|ref|XP_002038108.1| GM17931 [Drosophila sechellia] gi|194132958|gb|EDW54526.1| GM17931 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|348511159|ref|XP_003443112.1| PREDICTED: glutaryl-CoA dehydrogenase, mitochondrial-like [Oreochromis niloticus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query464
ZFIN|ZDB-GENE-040426-1855441 gcdh "glutaryl-Coenzyme A dehy 0.515 0.541 0.566 3.7e-116
FB|FBgn0031824419 CG9547 [Drosophila melanogaste 0.471 0.522 0.605 1.8e-114
UNIPROTKB|F6UXJ6438 GCDH "Uncharacterized protein" 0.515 0.545 0.590 1.3e-113
DICTYBASE|DDB_G0283411420 gcdh "glutaryl-CoA dehydrogena 0.471 0.521 0.597 1e-109
ZFIN|ZDB-GENE-041010-117427 gcdhl "glutaryl-Coenzyme A deh 0.431 0.468 0.599 1.3e-109
UNIPROTKB|E2QU00437 GCDH "Uncharacterized protein" 0.515 0.546 0.590 8.1e-108
UNIPROTKB|Q4KKG4393 gcdH "Glutaryl-CoA dehydrogena 0.471 0.557 0.588 3.1e-106
WB|WBGene00010052409 F54D5.7 [Caenorhabditis elegan 0.476 0.540 0.570 2.5e-104
TIGR_CMR|SPO_1955436 SPO_1955 "glutaryl-CoA dehydro 0.476 0.506 0.588 3.6e-103
UNIPROTKB|Q47V61394 gcdH "Glutaryl-CoA dehydrogena 0.476 0.560 0.566 5.8e-103
ZFIN|ZDB-GENE-040426-1855 gcdh "glutaryl-Coenzyme A dehydrogenase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 721 (258.9 bits), Expect = 3.7e-116, Sum P(2) = 3.7e-116
 Identities = 141/249 (56%), Positives = 176/249 (70%)

Query:   219 THGPQNPQIRGFIIEKDTP---GAPLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGY 275
             T    NP  R + I         +P AD+C++WAKCED        ++RGF++E+   G 
Sbjct:   196 TKAKYNPSSRTYSISGTKTWITNSPYADICVVWAKCEDG-------KVRGFVLERGMKGL 248

Query:   276 ETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTLLNSARYGIAWGVLGAA 335
              T  I+GKF LRAS TG I +D V V ++ +L   +    PF  LN+AR+GIAWG LGAA
Sbjct:   249 STPKIEGKFSLRASATGMIVMDEVEVPEENLLPHVSGLAGPFGCLNNARFGIAWGALGAA 308

Query:   336 EFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPE 395
             EFCF  AR Y +DR+QF  PLA NQ+ Q K+A+MLT+I++ L SC Q+GRL +    TPE
Sbjct:   309 EFCFHAARQYTMDRIQFGVPLARNQLIQKKMADMLTEITIGLQSCLQLGRLIDQKKHTPE 368

Query:   396 MISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILG 455
             MIS+LKRN+C KALDIAR ARDMLGGNGI+DEYH+IRH+ NLE VNTYEGT DIHALILG
Sbjct:   369 MISLLKRNSCGKALDIARQARDMLGGNGIADEYHIIRHVMNLEAVNTYEGTHDIHALILG 428

Query:   456 RAITGIQAF 464
             RAITG+Q+F
Sbjct:   429 RAITGLQSF 437
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0016491 "oxidoreductase activity" evidence=IEA
FB|FBgn0031824 CG9547 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F6UXJ6 GCDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283411 gcdh "glutaryl-CoA dehydrogenase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-117 gcdhl "glutaryl-Coenzyme A dehydrogenase, like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2QU00 GCDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KKG4 gcdH "Glutaryl-CoA dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
WB|WBGene00010052 F54D5.7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1955 SPO_1955 "glutaryl-CoA dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q47V61 gcdH "Glutaryl-CoA dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P81140GCDH_PIG1, ., 3, ., 9, 9, ., 70.52950.84690.9632yesN/A
Q92947GCDH_HUMAN1, ., 3, ., 9, 9, ., 70.52180.85120.9018yesN/A
Q2KHZ9GCDH_BOVIN1, ., 3, ., 9, 9, ., 70.53430.83620.8858yesN/A
Q20772GCDH_CAEEL1, ., 3, ., 9, 9, ., 70.47580.84910.9633yesN/A
Q96329ACOX4_ARATH1, ., 3, ., 3, ., 60.30940.82320.8761yesN/A
Q54R47GCDH_DICDI1, ., 3, ., 9, 9, ., 70.49890.84050.9285yesN/A
P45857ACDB_BACSU1, ., 3, ., 9, 9, ., -0.28370.80170.9815yesN/A
Q8HXX8GCDH_MACFA1, ., 3, ., 9, 9, ., 70.51520.85120.9018N/AN/A
Q60759GCDH_MOUSE1, ., 3, ., 9, 9, ., 70.52880.83400.8835yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.990.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 0.0
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 6e-85
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 7e-73
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 6e-72
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 6e-71
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 4e-48
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 3e-47
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 1e-39
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 4e-38
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 7e-34
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 8e-34
pfam02771113 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, 8e-32
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 4e-25
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 7e-24
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 3e-19
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 3e-18
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 1e-17
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 5e-17
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 7e-17
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 8e-16
PRK09463 777 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed 5e-13
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 8e-13
cd01150 610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 4e-12
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 2e-11
PRK13026 774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 2e-11
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 3e-10
PTZ00456 622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 4e-10
PLN02636 686 PLN02636, PLN02636, acyl-coenzyme A oxidase 2e-08
PLN02443 664 PLN02443, PLN02443, acyl-coenzyme A oxidase 4e-06
PTZ00460 646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 9e-06
pfam08028134 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, 1e-04
PLN02876822 PLN02876, PLN02876, acyl-CoA dehydrogenase 2e-04
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 0.002
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information 
 Score =  559 bits (1443), Expect = 0.0
 Identities = 237/450 (52%), Positives = 297/450 (66%), Gaps = 64/450 (14%)

Query: 15  FNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGIL 74
           FNWED LN+  LLT+EE+ +RD+ + FC   L P+++E +R E  D R I  E G LG+L
Sbjct: 1   FNWEDPLNLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFD-RKIIEEMGELGLL 59

Query: 75  GCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLP 134
           G T++GYGCAG S ++ GL+ARE+ERVDSGYRS  SVQSSLVM  I  +GS++QK KYLP
Sbjct: 60  GATIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLP 119

Query: 135 ELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIIT 194
           +LA G LIGCFGLTEPN GSD                G     M+TRA+ D     Y + 
Sbjct: 120 KLASGELIGCFGLTEPNHGSD---------------PGG----METRARKD--GGGYKLN 158

Query: 195 GSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDA 254
           GSKTWI+++P+AD+ ++WA+ ++                                     
Sbjct: 159 GSKTWITNSPIADVFVVWARNDE------------------------------------- 181

Query: 255 THGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYK 314
                  +IRGFI+E+   G     I+GKF LRAS+TG I +DNV V ++ +L  A   +
Sbjct: 182 -----TGKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAEGLR 236

Query: 315 APFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDIS 374
            PF  LN+ARYGIAWG LGAAE C+  AR Y+LDR QF +PLAA Q+ Q KLA+MLT+I+
Sbjct: 237 GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIA 296

Query: 375 LALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRHM 434
           L L++C +VGRLK+    TPE IS+LKRNNC KAL+IAR AR+MLGGNGISDEYH+IRHM
Sbjct: 297 LGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHM 356

Query: 435 NNLEVVNTYEGTSDIHALILGRAITGIQAF 464
            NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 357 VNLESVNTYEGTHDIHALILGRAITGIQAF 386

Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans. Length = 386
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 464
KOG0139|consensus398 100.0
KOG0140|consensus408 100.0
KOG0141|consensus421 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
KOG0138|consensus432 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
KOG0137|consensus 634 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
PLN02636 686 acyl-coenzyme A oxidase 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
PTZ00456 622 acyl-CoA dehydrogenase; Provisional 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
PLN02312 680 acyl-CoA oxidase 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
PTZ00460 646 acyl-CoA dehydrogenase; Provisional 100.0
KOG1469|consensus392 100.0
cd01150 610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PTZ00457 520 acyl-CoA dehydrogenase; Provisional 100.0
PLN02443 664 acyl-coenzyme A oxidase 100.0
KOG0135|consensus 661 100.0
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.94
KOG0136|consensus 670 99.92
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.89
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 99.69
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.56
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.55
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.48
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.44
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 98.9
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 94.86
PTZ00457520 acyl-CoA dehydrogenase; Provisional 84.73
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 83.45
>KOG0139|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.8e-73  Score=549.54  Aligned_cols=361  Identities=31%  Similarity=0.527  Sum_probs=349.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC-CCCCCCCHHHHHHHHHHHHhcCCc
Q psy9220          26 LLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG-YGCAGASHISGGLVAREIERVDSG  104 (464)
Q Consensus        26 ~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~-~GG~g~~~~~~~~v~e~l~~~~~~  104 (464)
                      .|++.+..+.+.+++|+++.+.|+..+.|++..+| ..+++.+.++|++++.+|+ |||.|.++.....++|||++.|++
T Consensus        36 ~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~-~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~s  114 (398)
T KOG0139|consen   36 ILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYP-ASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDAS  114 (398)
T ss_pred             hcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCC-HHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCcc
Confidence            58999999999999999999999999999999999 8999999999999999998 999999999999999999999999


Q ss_pred             hhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCCCCCCceeEEEE
Q psy9220         105 YRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKY  184 (464)
Q Consensus       105 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~d~~~~~t~A~~  184 (464)
                      +++++.+|+.+...+|..+|+++||++|+|.+ .|+.+++||+|||++||                   |+..+.|+|++
T Consensus       115 v~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGS-------------------Da~A~~T~Ak~  174 (398)
T KOG0139|consen  115 VGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGS-------------------DAFALKTTAKK  174 (398)
T ss_pred             ceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCc-------------------chHHhhhhHhh
Confidence            99999999999999999999999999887765 58889999999999999                   99999999999


Q ss_pred             eCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhcccCCCCCCCCCeE
Q psy9220         185 DPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDATHGPQNPQIR  264 (464)
Q Consensus       185 ~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (464)
                      +  ++.|+|||.|.||||+..|++++|+|.+++.                                       .++.+++
T Consensus       175 ~--Gd~~viNGsKmWItN~~~A~~~lVfan~d~~---------------------------------------~~~Kgit  213 (398)
T KOG0139|consen  175 D--GDDYVINGSKMWITNAGEADWFLVFANADPS---------------------------------------KGYKGIT  213 (398)
T ss_pred             c--CCeEEEecceeeecCCcccceEEEEEecChh---------------------------------------hccCcee
Confidence            9  8999999999999999999999999998544                                       5678999


Q ss_pred             EEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc-ChHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9220         265 GFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN-SYKAPFTLLNSARYGIAWGVLGAAEFCFSMAR  343 (464)
Q Consensus       265 ~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~-g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~  343 (464)
                      +|+||+++||+++....+++|||++.++.++|+||+||++++||+++ ||++....|+.+|+.++++.+|.++.||+.++
T Consensus       214 ~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~AqmlglaQ~c~d~tI  293 (398)
T KOG0139|consen  214 CFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQMLGLAQGCFDETI  293 (398)
T ss_pred             EEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhhhhhHhHHHhhh
Confidence            99999999999999999999999999999999999999999999999 99999999999999999999999999999999


Q ss_pred             HHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCccc
Q psy9220         344 SYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNG  423 (464)
Q Consensus       344 ~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g  423 (464)
                      .|+++|.+||++|.++|.+|+++|+|.+++|++|+++|+++++.|++.+...+++|||+++++.|..++++|+|++||.|
T Consensus       294 ~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~G  373 (398)
T KOG0139|consen  294 PYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTTHQCIQWLGGVG  373 (398)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcccHHHHHhhhccceeccChHH
Q psy9220         424 ISDEYHVIRHMNNLEVVNTYEGTSD  448 (464)
Q Consensus       424 ~~~~~~l~r~~rda~~~~~~~G~~~  448 (464)
                      |+++.|.+|+|||++...||+|+++
T Consensus       374 yt~d~paek~yRDarI~~IyeGtsn  398 (398)
T KOG0139|consen  374 YTKDFPAEKFYRDARIGEIYEGTSN  398 (398)
T ss_pred             ccccccHHHHhhhceeeeeecCCCC
Confidence            9999999999999999999999863

>KOG0140|consensus Back     alignment and domain information
>KOG0141|consensus Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>KOG0138|consensus Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>KOG0137|consensus Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>KOG1469|consensus Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>KOG0135|consensus Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>KOG0136|consensus Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 1e-129
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 1e-129
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 1e-128
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 1e-115
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 1e-115
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 1e-115
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 2e-85
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 2e-80
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 1e-78
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-52
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 1e-52
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 3e-38
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 2e-33
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 4e-33
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 5e-33
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 1e-29
2z1q_A 577 Crystal Structure Of Acyl Coa Dehydrogenase Length 1e-28
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 2e-28
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 9e-28
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 1e-27
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 2e-27
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 7e-27
3owa_A 597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 3e-26
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 4e-26
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 5e-26
2uxw_A 607 Crystal Structure Of Human Very Long Chain Acyl-coa 5e-26
3b96_A 587 Structural Basis For Substrate Fatty-Acyl Chain Spe 5e-26
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 7e-26
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 1e-25
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 3e-24
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 3e-24
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 1e-23
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 3e-18
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 3e-17
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 1e-16
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 8e-16
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 2e-08
2fon_A 683 X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxid 2e-07
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 8e-07
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure 
Iteration: 1

 Score =  458 bits (1178), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 237/451 (52%), Positives = 299/451 (66%), Gaps = 63/451 (13%)
Query: 14  KFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGI 73
           +F+W+D L +   LT +E L+RD+ +++C   L P+I+   R+E    R I +E G LG+
Sbjct: 1   EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIISEMGELGV 59
Query: 74  LGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYL 133
           LG T++GYGCAG S ++ GL+ARE+ERVDSGYRS  SVQSSLVM  I  YGS++Q+ KYL
Sbjct: 60  LGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYL 119
Query: 134 PELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYII 193
           P+LAKG L+GCFGLT                   EPN+GSD ++M+TRA Y+ S+ SY +
Sbjct: 120 PQLAKGELLGCFGLT-------------------EPNSGSDPSSMETRAHYNSSNKSYTL 160
Query: 194 TGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253
            G+KTWI+++P+A                                    DL ++WA+CED
Sbjct: 161 NGTKTWITNSPMA------------------------------------DLFVVWARCED 184
Query: 254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSY 313
                    IRGF++EK   G     I+GKF LRAS TG I +D V V ++ +L  A+S 
Sbjct: 185 GC-------IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 237
Query: 314 KAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
             PF  LN+ARYGIAWGVLGA+EFC   AR Y LDR+QF  PLA NQ+ Q KLA+MLT+I
Sbjct: 238 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 297
Query: 374 SLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRH 433
           +L L +C Q+GRLK+ +   PEM+S+LKRNNC KALDIAR ARDMLGGNGISDEYHVIRH
Sbjct: 298 TLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRH 357
Query: 434 MNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
             NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 358 AMNLEAVNTYEGTHDIHALILGRAITGIQAF 388
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) Length = 683 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query464
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 0.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 0.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 0.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 0.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 0.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 0.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 2e-85
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 2e-84
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 3e-84
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 6e-84
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 1e-83
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 3e-83
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 1e-82
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 2e-81
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 2e-80
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 8e-80
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 2e-78
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 2e-78
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 3e-78
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 8e-78
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 2e-77
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 2e-76
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 1e-75
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 2e-74
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 3e-74
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 1e-72
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 6e-65
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 3e-58
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 4e-58
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 2e-44
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 2e-43
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 4e-24
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 1e-22
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 1e-19
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 1e-18
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 2e-16
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 2e-16
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 2e-10
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
 Score =  619 bits (1598), Expect = 0.0
 Identities = 237/451 (52%), Positives = 299/451 (66%), Gaps = 63/451 (13%)

Query: 14  KFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGI 73
           +F+W+D L +   LT +E L+RD+ +++C   L P+I+   R+E    R I +E G LG+
Sbjct: 1   EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIISEMGELGV 59

Query: 74  LGCTLRGYGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYL 133
           LG T++GYGCAG S ++ GL+ARE+ERVDSGYRS  SVQSSLVM  I  YGS++Q+ KYL
Sbjct: 60  LGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYL 119

Query: 134 PELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYII 193
           P+LAKG L+GCFGLTEPN+GSD ++M+TR                   A Y+ S+ SY +
Sbjct: 120 PQLAKGELLGCFGLTEPNSGSDPSSMETR-------------------AHYNSSNKSYTL 160

Query: 194 TGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED 253
            G+KTWI+++P+ADL ++WA+CED                                    
Sbjct: 161 NGTKTWITNSPMADLFVVWARCEDG----------------------------------- 185

Query: 254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSY 313
                    IRGF++EK   G     I+GKF LRAS TG I +D V V ++ +L  A+S 
Sbjct: 186 --------CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSL 237

Query: 314 KAPFTLLNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDI 373
             PF  LN+ARYGIAWGVLGA+EFC   AR Y LDR+QF  PLA NQ+ Q KLA+MLT+I
Sbjct: 238 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 297

Query: 374 SLALVSCCQVGRLKESNLDTPEMISILKRNNCAKALDIARNARDMLGGNGISDEYHVIRH 433
           +L L +C Q+GRLK+ +   PEM+S+LKRNNC KALDIAR ARDMLGGNGISDEYHVIRH
Sbjct: 298 TLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRH 357

Query: 434 MNNLEVVNTYEGTSDIHALILGRAITGIQAF 464
             NLE VNTYEGT DIHALILGRAITGIQAF
Sbjct: 358 AMNLEAVNTYEGTHDIHALILGRAITGIQAF 388
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
3owa_A 597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
1w07_A 659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
2ddh_A 661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 100.0
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.95
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 91.98
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
Probab=100.00  E-value=1.4e-67  Score=546.12  Aligned_cols=394  Identities=44%  Similarity=0.733  Sum_probs=367.4

Q ss_pred             CCcccccccccCcccCcccccccCCCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCC
Q psy9220           1 MSLFRPLLRSYSTKFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRG   80 (464)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~   80 (464)
                      ||+..|..   ..++++.|+.+|++.++++++++++.+++|+++++.|...+.++.+.+| +++|+.+++.||+++.+ +
T Consensus         3 m~~~~~~~---~~~~~~~~~~~m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~Gl~~l~~-~   77 (399)
T 3swo_A            3 MTLTAPSK---KSTYAPLELFDTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLP-SELAKEFGNLGVLGMHL-Q   77 (399)
T ss_dssp             -----------CCCCCHHHHHTGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-TTHHHHHHHHTCTTTTS-C
T ss_pred             cCccCCCc---CccccccccccCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCC-HHHHHHHHHCCCCcCCh-h
Confidence            67776733   3447788888999999999999999999999999998888888889999 99999999999999999 8


Q ss_pred             -CCCCCCCHHHHHHHHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccc
Q psy9220          81 -YGCAGASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANM  159 (464)
Q Consensus        81 -~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~  159 (464)
                       |||.|+++.+...++|++++.|+++++.+.+|..++...+..+|+++||++|||++++|+.++|+++|||++||     
T Consensus        78 e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gs-----  152 (399)
T 3swo_A           78 GYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGS-----  152 (399)
T ss_dssp             STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSS-----
T ss_pred             hhCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCC-----
Confidence             99999999999999999999999988777777667778899999999999999999999999999999999999     


Q ss_pred             cccccCCCCCCCCCCCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCC
Q psy9220         160 QTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGA  239 (464)
Q Consensus       160 ~~~~~~~~~~~~~~d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (464)
                                    |+..++|+|+++  ++||+|||+|.|||+++.||+++|+|+++ .                     
T Consensus       153 --------------d~~~~~t~A~~~--~~g~~lnG~K~~vs~a~~Ad~~~v~a~~~-~---------------------  194 (399)
T 3swo_A          153 --------------NPAGMRTRARRD--GSDWILNGTKMWITNGNLADVATVWAQTD-D---------------------  194 (399)
T ss_dssp             --------------CGGGCCCEEEEE--TTEEEEEEEEEEEETTTTCSEEEEEEBCT-T---------------------
T ss_pred             --------------CCccceEEEEEe--CCEEEEEEEEEeECCCCccCEEEEEEEeC-C---------------------
Confidence                          999999999999  89999999999999999999999999875 2                     


Q ss_pred             CchhhhhhhhhcccCCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCccccccChHHHHHh
Q psy9220         240 PLADLCILWAKCEDATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLANSYKAPFTL  319 (464)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~g~~~~~~~  319 (464)
                                            ++++|+||++.|||++.+.|+++|+++++++++.||||+||++++||...|+......
T Consensus       195 ----------------------g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~~~g~~~~~~~  252 (399)
T 3swo_A          195 ----------------------GIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGLSAPLSC  252 (399)
T ss_dssp             ----------------------SCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTTCCSTHHHHHH
T ss_pred             ----------------------ceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCCChhHHHHHHH
Confidence                                  4789999999999999999999999999999999999999999999983399999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q psy9220         320 LNSARYGIAWGVLGAAEFCFSMARSYMLDRVQFNKPLAANQIPQLKLANMLTDISLALVSCCQVGRLKESNLDTPEMISI  399 (464)
Q Consensus       320 l~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~~l~~~~~i~~~la~~~~~l~~~r~~~~~~~~~~d~~~~~~~~~~~  399 (464)
                      +...|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|..+++++|++++++++.++.+.+....+++
T Consensus       253 l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~  332 (399)
T 3swo_A          253 LNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISL  332 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988778888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCcccccCcccHHHHHhhhccceeccChHHHHHHHHHHHhhCCCCC
Q psy9220         400 LKRNNCAKALDIARNARDMLGGNGISDEYHVIRHMNNLEVVNTYEGTSDIHALILGRAITGIQAF  464 (464)
Q Consensus       400 aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~rda~~~~~~~G~~~~~~~~i~r~l~~~~~~  464 (464)
                      +|.++++.+.++++.++|++||.||+++++++|+|||++...+++|++++++..|+|.++|+|+|
T Consensus       333 aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg~p~~  397 (399)
T 3swo_A          333 GKLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGKAAF  397 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999987
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 464
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 1e-42
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 2e-36
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 5e-31
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 2e-30
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 9e-29
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 3e-27
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 7e-26
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 6e-25
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 1e-24
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 3e-24
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 1e-23
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 3e-23
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 1e-22
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 3e-22
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 4e-22
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 1e-20
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 2e-20
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 2e-19
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 4e-19
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 5e-17
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 8e-17
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 3e-16
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 3e-16
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 8e-12
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 5e-08
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (376), Expect = 1e-42
 Identities = 80/292 (27%), Positives = 127/292 (43%), Gaps = 63/292 (21%)

Query: 18  EDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVE-DFRHETSDVRAIYAEFGRLGILGC 76
           +DA+N    L++E++ LR ++  F    L PK  E D  +E  ++R  + + G LG+LG 
Sbjct: 2   DDAIN---GLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGI 58

Query: 77  TLRGYGCA-GASHISGGLVAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPE 135
           T        G  ++   LV  EI R        Y   S+L +  + + G++ QK KYLP+
Sbjct: 59  TAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPK 118

Query: 136 LAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGSDVANMQTRAKYDPSSNSYIITG 195
           L  G  IG   ++EP                   NAGSDV +M+ +A+     N YI+ G
Sbjct: 119 LISGEYIGALAMSEP-------------------NAGSDVVSMKLKAEKKG--NHYILNG 157

Query: 196 SKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCEDAT 255
           +K WI++ P AD+ I++AK +                                       
Sbjct: 158 NKFWITNGPDADVLIVYAKTDLA------------------------------------- 180

Query: 256 HGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQML 307
             P +  I  FI+EK  PG+ TS    K G+R S T  +  ++ ++    +L
Sbjct: 181 AVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANIL 232
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query464
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 100.0
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.96
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 99.96
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 99.95
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.94
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.94
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.94
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.94
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.93
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.93
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.93
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.93
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.92
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.89
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.87
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.81
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 95.85
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Glutaryl-CoA dehydrogenase GCDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-44  Score=340.91  Aligned_cols=235  Identities=53%  Similarity=0.957  Sum_probs=219.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHHhhcCCchhhhhhcCCCChHHHHHHHHHcCCCCCCCCCCCCCCCCHHHHHH
Q psy9220          14 KFNWEDALNISSLLTQEEKLLRDSVKSFCDAVLHPKIVEDFRHETSDVRAIYAEFGRLGILGCTLRGYGCAGASHISGGL   93 (464)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~~Gl~~l~vP~~GG~g~~~~~~~~   93 (464)
                      .|||+|+..|+..|++|+.++++.+|+|+++++.|...+.|+.+.+| +++++++.+.|++++.+|++||.|.+......
T Consensus         1 ~~~~~d~~~~d~~Lteeq~~l~d~~r~f~~~~i~p~~~~~d~~~~~p-~~~~~~~~~~g~~~~~i~~~gg~g~~~~~~~~   79 (236)
T d1siqa2           1 EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH-REIISEMGELGVLGPTIKGYGCAGVSSVAYGL   79 (236)
T ss_dssp             CCCTTSTTCGGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-THHHHHHHHTTCSSTTCEETTEECCCHHHHHH
T ss_pred             CCCCCCcccccccCCHHHHHHHHHHHHHHHhhCChhHHHHHhcCCCC-HHHHHHhhhhhcccccccccccCCcCHHHHHH
Confidence            48999999999999999999999999999999999999999999999 99999999999999999889999999999999


Q ss_pred             HHHHHHhcCCchhhHHHhhhhhHHHHHHhcCCHHHHHHHhHHHhcCCceEEEeecCCCCCCCcccccccccCCCCCCCCC
Q psy9220          94 VAREIERVDSGYRSMYSVQSSLVMGAIDKYGSDKQKAKYLPELAKGNLIGCFGLTEPNAGSDVANMQTRCFGLTEPNAGS  173 (464)
Q Consensus        94 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gs~~~~~~~~~~~~~~~~~~~  173 (464)
                      +++++++.+.+.+..+.++..++...+..+++++||++|||++++|+.++|+++|||++||                   
T Consensus        80 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~~~a~tEp~~gs-------------------  140 (236)
T d1siqa2          80 LARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGS-------------------  140 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSS-------------------
T ss_pred             HHHhhhccccccccccccccccchhhhhhhcCHHHHHHhcCccCCCCEEecccCcCCCccc-------------------
Confidence            9999999998887777777767778899999999999999999999999999999999999                   


Q ss_pred             CCCCceeEEEEeCCCCeEEEEeEEEeecCCCCCCEEEEEEEecCCCCCCCCCCccccccccCCCCCCchhhhhhhhhccc
Q psy9220         174 DVANMQTRAKYDPSSNSYIITGSKTWISSAPLADLCILWAKCEDPTHGPQNPQIRGFIIEKDTPGAPLADLCILWAKCED  253 (464)
Q Consensus       174 d~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (464)
                      |...+.|+++...++++|+|||+|.|||+++.||+++|+|+++++                                   
T Consensus       141 d~~~~~t~a~~~~~~~~~vlnG~K~~vt~a~~Ad~~~V~art~~~-----------------------------------  185 (236)
T d1siqa2         141 DPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDG-----------------------------------  185 (236)
T ss_dssp             CGGGCCCEEEEETTTTEEEEEEEEEEEETGGGCSEEEEEEEETTS-----------------------------------
T ss_pred             ccccccccccccccccceEeccccccEecCCCceEEEEEecccCC-----------------------------------
Confidence            888888888555448899999999999999999999999999754                                   


Q ss_pred             CCCCCCCCCeEEEEEeCCCCCeEEeccCCccCCcccCeeEEEEceeEeCccCcccccc
Q psy9220         254 ATHGPQNPQIRGFIIEKDTPGYETSVIKGKFGLRASVTGSISLDNVRVSQDQMLLLAN  311 (464)
Q Consensus       254 ~~~~~~~~~~~~flV~~~~~Gv~i~~~~~~~G~~~~~~~~v~f~nv~Vp~~~llg~~~  311 (464)
                              .+++|+||++.|||++.+.+.++|+|++++++|+||||+||++++||+.+
T Consensus       186 --------~~~~flV~~~~~Gv~v~~~~~~~g~r~~~~~~l~fd~V~VP~~~llGg~~  235 (236)
T d1siqa2         186 --------CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS  235 (236)
T ss_dssp             --------CEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTCC
T ss_pred             --------cceEEeecCCCCCeEeCCcccccccccCceEEEEEeeEEECHHHCcCCCC
Confidence                    58999999999999999999999999999999999999999999998753
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure