Psyllid ID: psy9223

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
MSDLTLNLVHKFGIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKK
ccccccccHHHcccccccHHHHEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccEEEEEccccccEEEEEEEEEEEccccccccccccEEEEcEEEEEEEccHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHccccccccccccccccHHcccc
cccHHHHHHHHHcHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHcccccccccEEEEEEEccccEEEEEEEEEEEcccccHEEccccEEEEEEEEEEEEEccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHccccEEEEcccHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHccccccccccccccccccHHccc
MSDLTLNLVHKFGIVQEYERAVIFRLGrvreggprgpglffilpciddyakvdlrtvsfdvppqeIVQEYERAVIFRLgrvreggprgpglffilpciddyakvdlrtvsfdvppqevmskdsvtlHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANldhatepwgvkverveikdvrlPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSIsqeknstiifpipVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANldhatepwgvkverveikdvrlPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSisqeknstivfpiplrYLQTLNSisqeknstiifpipvDIISTFMKK
MSDLTLNLVHKFGIVQEYERAVIFRLgrvreggprgPGLFFILPCIDDYAKVDLRTVSfdvppqeivqEYERAVIFRLgrvreggprgPGLFFILPCIDDYAKVDLRTVSFdvppqevmskdsvtlhvDAVVYYRRFLRKRLLAattlrnvlgtrNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSisqeknstiIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSisqeknstiifpipvdiISTFMKK
MSDLTLNLVHKFGIVQEYERAVIFrlgrvreggprgpglFFILPCIDDYAKVDLRTVSFDVPPQEIVQEYERAVIFrlgrvreggprgpglFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYrrflrkrllaattlrNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQramaaeaeatregraKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQramaaeaeatregraKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKK
****TLNLVHKFGIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEILSER**I**AMQANLDHATEPWGVKVERVEIKDVR**************************************AADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSE*******MQANLDHATEPWGVKVERVEIKDVR***************************************ADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSISQEKNSTIIFPIPVDIISTF***
***************************RVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAM*********GRAKVIAAEAEMKASRAL*************LQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAM***********AKVIAAEAEMKA********************RLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRY*********************DIISTFM**
MSDLTLNLVHKFGIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQ*************RAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQ*************RAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKK
*SDLTLNLVHKFGIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSISQ*****II*****D********
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MSDLTLNLVHKFGIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRFLRKRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query457 2.2.26 [Sep-21-2011]
Q27433481 Mechanosensory protein 2 no N/A 0.468 0.444 0.704 5e-81
Q16TM5297 Band 7 protein AAEL010189 N/A N/A 0.470 0.723 0.701 7e-80
Q7PPU9280 Band 7 protein AGAP004871 no N/A 0.470 0.767 0.701 8e-80
Q9VZA4505 Band 7 protein CG42540 OS no N/A 0.487 0.441 0.672 6e-79
P27105288 Erythrocyte band 7 integr yes N/A 0.481 0.763 0.648 8e-77
P54116284 Erythrocyte band 7 integr yes N/A 0.472 0.760 0.669 1e-76
Q22165281 Stomatin-4 OS=Caenorhabdi no N/A 0.470 0.765 0.662 2e-76
Q19958375 Stomatin-2 OS=Caenorhabdi no N/A 0.457 0.557 0.689 4e-75
Q21190285 Protein unc-1 OS=Caenorha no N/A 0.468 0.750 0.621 4e-69
Q19200330 Stomatin-1 OS=Caenorhabdi no N/A 0.472 0.654 0.582 8e-68
>sp|Q27433|MEC2_CAEEL Mechanosensory protein 2 OS=Caenorhabditis elegans GN=mec-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  301 bits (772), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 160/227 (70%), Positives = 186/227 (81%), Gaps = 13/227 (5%)

Query: 65  EIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSV 124
           ++VQEYERAVIFRLGR+  GG +GPG+FFI+PCID Y KVDLR +SF+VPPQE++SKDSV
Sbjct: 142 KVVQEYERAVIFRLGRLMPGGAKGPGIFFIVPCIDTYRKVDLRVLSFEVPPQEILSKDSV 201

Query: 125 TLHVDAVVYYR-------------RFLRKRLLAATTLRNVLGTRNLAEILSERESISHAM 171
           T+ VDAVVY+R                  +LLA TTLRN+LGT+ LAE+LS+RE+ISH M
Sbjct: 202 TVAVDAVVYFRISNATISVTNVEDAARSTKLLAQTTLRNILGTKTLAEMLSDREAISHQM 261

Query: 172 QANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRAL 231
           Q  LD ATEPWGVKVERVE+KDVRLP QLQRAMAAEAEA RE RAKVI AE E KASRAL
Sbjct: 262 QTTLDEATEPWGVKVERVEVKDVRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKASRAL 321

Query: 232 KEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMK 278
           KEAA+VI ESP+ALQLRYLQTLNSIS EKNSTIIFP P+D++S F++
Sbjct: 322 KEAAEVIAESPSALQLRYLQTLNSISAEKNSTIIFPFPIDLLSAFLQ 368
Positively regulates the activity of the putative mechanosensory transduction channel. May link the mechanosensory channel and the microtubule cytoskeleton of the touch receptor neurons. Required for the function of a set of six touch receptor neurons.
Caenorhabditis elegans (taxid: 6239)
>sp|Q16TM5|BND7A_AEDAE Band 7 protein AAEL010189 OS=Aedes aegypti GN=AAEL010189 PE=3 SV=1 Back     alignment and function description
>sp|Q7PPU9|BND7A_ANOGA Band 7 protein AGAP004871 OS=Anopheles gambiae GN=AGAP004871 PE=3 SV=3 Back     alignment and function description
>sp|Q9VZA4|BND7A_DROME Band 7 protein CG42540 OS=Drosophila melanogaster GN=CG42540 PE=2 SV=2 Back     alignment and function description
>sp|P27105|STOM_HUMAN Erythrocyte band 7 integral membrane protein OS=Homo sapiens GN=STOM PE=1 SV=3 Back     alignment and function description
>sp|P54116|STOM_MOUSE Erythrocyte band 7 integral membrane protein OS=Mus musculus GN=Stom PE=1 SV=3 Back     alignment and function description
>sp|Q22165|STO4_CAEEL Stomatin-4 OS=Caenorhabditis elegans GN=sto-4 PE=3 SV=2 Back     alignment and function description
>sp|Q19958|STO2_CAEEL Stomatin-2 OS=Caenorhabditis elegans GN=sto-2 PE=2 SV=4 Back     alignment and function description
>sp|Q21190|UNC1_CAEEL Protein unc-1 OS=Caenorhabditis elegans GN=unc-1 PE=2 SV=2 Back     alignment and function description
>sp|Q19200|STO1_CAEEL Stomatin-1 OS=Caenorhabditis elegans GN=sto-1 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
405957820355 Mechanosensory protein 2, partial [Crass 0.687 0.884 0.588 1e-107
91085193266 PREDICTED: similar to AGAP003352-PA [Tri 0.479 0.823 0.759 6e-87
332375396266 unknown [Dendroctonus ponderosae] 0.470 0.808 0.741 4e-85
242020298306 Mechanosensory protein, putative [Pedicu 0.468 0.699 0.726 3e-84
157130555318 prohibitin, putative [Aedes aegypti] gi| 0.477 0.685 0.701 3e-84
347969746331 AGAP003352-PA [Anopheles gambiae str. PE 0.492 0.679 0.689 4e-84
347969744337 AGAP003352-PC [Anopheles gambiae str. PE 0.492 0.667 0.689 1e-83
321474958263 hypothetical protein DAPPUDRAFT_45422 [D 0.468 0.813 0.753 2e-83
347969742390 AGAP003352-PB [Anopheles gambiae str. PE 0.492 0.576 0.689 3e-83
312376694409 hypothetical protein AND_12389 [Anophele 0.490 0.547 0.693 3e-83
>gi|405957820|gb|EKC24000.1| Mechanosensory protein 2, partial [Crassostrea gigas] Back     alignment and taxonomy information
 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 239/406 (58%), Positives = 284/406 (69%), Gaps = 92/406 (22%)

Query: 65  EIVQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSV 124
           ++VQEYERAVIFRLGRV  GG +GPGLFFILPCIDD+ K D+RT+++DVPPQE+++KDSV
Sbjct: 29  KVVQEYERAVIFRLGRVLPGGAKGPGLFFILPCIDDFKKTDMRTLTYDVPPQEILTKDSV 88

Query: 125 TLHVDAVVYYRRF-------------LRKRLLAATTLRNVLGTRNLAEILSERESISHAM 171
           T+ VDAV+Y R F                RLLAATTLRNVLGTR +AE+L++RESI+  M
Sbjct: 89  TVAVDAVIYIRIFDATMATVNVSDAYQSTRLLAATTLRNVLGTRLMAELLTDRESIASNM 148

Query: 172 QANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRAL 231
           +  LD AT+PWGVKVERVEIKDVRLP QLQRAMAAEAEA+RE RAK++AAE E KASRAL
Sbjct: 149 KVQLDEATDPWGVKVERVEIKDVRLPIQLQRAMAAEAEASREARAKIVAAEGEQKASRAL 208

Query: 232 KEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLR 291
           KEAADV++ESPAA+QLRYLQTLNSI+ E+NSTIIFP+P+D+                   
Sbjct: 209 KEAADVMMESPAAIQLRYLQTLNSIAAERNSTIIFPLPIDV------------------- 249

Query: 292 NVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAE 351
                                    LD AT+PWGVKVERVEIKDVRLP QLQRAMAAEAE
Sbjct: 250 ------------------------QLDEATDPWGVKVERVEIKDVRLPIQLQRAMAAEAE 285

Query: 352 ATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQKIQTNYLFQLRYLQTLQSI 411
           A+RE RAK++AAE E KASRALKEAADV++ESPAA+             QLRYLQTL SI
Sbjct: 286 ASREARAKIVAAEGEQKASRALKEAADVMMESPAAI-------------QLRYLQTLNSI 332

Query: 412 SQEKNSTIVFPIPLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKK 457
           + EKNSTI+                       FP+P+D+++TFMKK
Sbjct: 333 AAEKNSTII-----------------------FPLPIDVMATFMKK 355

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota
>gi|91085193|ref|XP_971694.1| PREDICTED: similar to AGAP003352-PA [Tribolium castaneum] gi|270009072|gb|EFA05520.1| hypothetical protein TcasGA2_TC015707 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332375396|gb|AEE62839.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|242020298|ref|XP_002430592.1| Mechanosensory protein, putative [Pediculus humanus corporis] gi|212515764|gb|EEB17854.1| Mechanosensory protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|157130555|ref|XP_001661914.1| prohibitin, putative [Aedes aegypti] gi|108871864|gb|EAT36089.1| AAEL011803-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|347969746|ref|XP_314252.4| AGAP003352-PA [Anopheles gambiae str. PEST] gi|333469250|gb|EAA09668.5| AGAP003352-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347969744|ref|XP_003436454.1| AGAP003352-PC [Anopheles gambiae str. PEST] gi|333469252|gb|EGK97227.1| AGAP003352-PC [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|321474958|gb|EFX85922.1| hypothetical protein DAPPUDRAFT_45422 [Daphnia pulex] Back     alignment and taxonomy information
>gi|347969742|ref|XP_003436453.1| AGAP003352-PB [Anopheles gambiae str. PEST] gi|333469251|gb|EGK97226.1| AGAP003352-PB [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312376694|gb|EFR23708.1| hypothetical protein AND_12389 [Anopheles darlingi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query457
WB|WBGene00003166481 mec-2 [Caenorhabditis elegans 0.468 0.444 0.572 1.9e-60
FB|FBgn0030992367 CG33253 [Drosophila melanogast 0.481 0.599 0.553 8.1e-60
ZFIN|ZDB-GENE-050417-366280 stoml3b "stomatin (EPB72)-like 0.468 0.764 0.550 5.7e-59
UNIPROTKB|Q16TM5297 AAEL010189 "Band 7 protein AAE 0.470 0.723 0.565 1.9e-58
UNIPROTKB|Q7PPU9280 AGAP004871 "Band 7 protein AGA 0.470 0.767 0.565 1.9e-58
FB|FBgn0260657505 CG42540 [Drosophila melanogast 0.477 0.431 0.556 4e-58
ZFIN|ZDB-GENE-980526-486294 stom "stomatin" [Danio rerio ( 0.470 0.731 0.539 6.6e-58
UNIPROTKB|E1BTV1281 STOM "Uncharacterized protein" 0.457 0.743 0.545 5.9e-57
UNIPROTKB|F1N2R1284 STOM "Uncharacterized protein" 0.466 0.75 0.530 2e-56
RGD|1305109284 Stom "stomatin" [Rattus norveg 0.472 0.760 0.524 2.5e-56
WB|WBGene00003166 mec-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 130/227 (57%), Positives = 152/227 (66%)

Query:    65 EIVQEYERAVIFXXXXXXXXXXXXXXXFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSV 124
             ++VQEYERAVIF               FFI+PCID Y KVDLR +SF+VPPQE++SKDSV
Sbjct:   142 KVVQEYERAVIFRLGRLMPGGAKGPGIFFIVPCIDTYRKVDLRVLSFEVPPQEILSKDSV 201

Query:   125 TLHVDAVVYYXXXXXXXXXXX-------------XXXXNVLGTRNLAEILSERESISHAM 171
             T+ VDAVVY+                            N+LGT+ LAE+LS+RE+ISH M
Sbjct:   202 TVAVDAVVYFRISNATISVTNVEDAARSTKLLAQTTLRNILGTKTLAEMLSDREAISHQM 261

Query:   172 QANLDHATEPWGVKVERVEIKDVRLPQQLQXXXXXXXXXXXXXXXKVIAAEAEMKASRAL 231
             Q  LD ATEPWGVKVERVE+KDVRLP QLQ               KVI AE E KASRAL
Sbjct:   262 QTTLDEATEPWGVKVERVEVKDVRLPVQLQRAMAAEAEAAREARAKVIVAEGEQKASRAL 321

Query:   232 KEAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMK 278
             KEAA+VI ESP+ALQLRYLQTLNSIS EKNSTIIFP P+D++S F++
Sbjct:   322 KEAAEVIAESPSALQLRYLQTLNSISAEKNSTIIFPFPIDLLSAFLQ 368
GO:0016020 "membrane" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0007638 "mechanosensory behavior" evidence=IMP
GO:0009612 "response to mechanical stimulus" evidence=IMP
GO:0043005 "neuron projection" evidence=IDA
GO:0032589 "neuron projection membrane" evidence=IDA
FB|FBgn0030992 CG33253 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050417-366 stoml3b "stomatin (EPB72)-like 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q16TM5 AAEL010189 "Band 7 protein AAEL010189" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
UNIPROTKB|Q7PPU9 AGAP004871 "Band 7 protein AGAP004871" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
FB|FBgn0260657 CG42540 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-486 stom "stomatin" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTV1 STOM "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N2R1 STOM "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1305109 Stom "stomatin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P54116STOM_MOUSENo assigned EC number0.66950.47260.7605yesN/A
O28852Y1420_ARCFUNo assigned EC number0.50860.47040.8634yesN/A
P27105STOM_HUMANNo assigned EC number0.64800.48140.7638yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 5e-83
cd03403215 cd03403, Band_7_stomatin_like, Band_7_stomatin_lik 2e-50
smart00244160 smart00244, PHB, prohibitin homologues 2e-36
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 2e-32
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 1e-27
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 1e-23
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 1e-20
COG0330291 COG0330, HflC, Membrane protease subunits, stomati 8e-20
cd02106121 cd02106, Band_7, The band 7 domain of flotillin (r 6e-15
smart00244160 smart00244, PHB, prohibitin homologues 1e-12
pfam01145177 pfam01145, Band_7, SPFH domain / Band 7 family 1e-11
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 5e-10
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 2e-08
cd03405242 cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma 2e-07
cd03407262 cd03407, Band_7_4, A subgroup of the band 7 domain 8e-06
TIGR01933261 TIGR01933, hflK, HflK protein 2e-05
cd03401196 cd03401, Band_7_prohibitin, Band_7_prohibitin 1e-04
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 3e-04
cd03404266 cd03404, Band_7_HflK, Band_7_HflK: The band 7 doma 5e-04
COG2268548 COG2268, COG2268, Uncharacterized protein conserve 8e-04
TIGR01932317 TIGR01932, hflC, HflC protein 0.001
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information 
 Score =  254 bits (651), Expect = 5e-83
 Identities = 115/217 (52%), Positives = 144/217 (66%), Gaps = 16/217 (7%)

Query: 67  VQEYERAVIFRLGRVREGGPRGPGLFFILPCIDDYA-KVDLRTVSFDVPPQEVMSKDSVT 125
           V +YER V+ RLG+       GPGL FI+P ID  A KVDLR    DVPPQEV++KD+VT
Sbjct: 1   VPQYERGVVERLGKYH--RTLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVT 58

Query: 126 LHVDAVVYYRRFLRKR-------------LLAATTLRNVLGTRNLAEILSERESISHAMQ 172
           + VDAV+YYR     +              LA TTLR+V+G   L E+LSERE I+  + 
Sbjct: 59  VRVDAVLYYRVVDPVKAVYGVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELV 118

Query: 173 ANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALK 232
             LD AT+PWGVKVERVEIKD+ LPQ++Q AMA +AEA RE RAK+I AE E +A+  L 
Sbjct: 119 EILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEGERQAAILLA 178

Query: 233 EAADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIP 269
           EAA     +PAALQLR L+TL  I++E  ST++FP P
Sbjct: 179 EAAKQAAINPAALQLRELETLEEIAKEAASTVVFPAP 215

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215
>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|214581 smart00244, PHB, prohibitin homologues Back     alignment and domain information
>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|239501 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|130988 TIGR01933, hflK, HflK protein Back     alignment and domain information
>gnl|CDD|239495 cd03401, Band_7_prohibitin, Band_7_prohibitin Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|239498 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|233644 TIGR01932, hflC, HflC protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 457
PRK11029334 FtsH protease regulator HflC; Provisional 100.0
KOG2621|consensus288 100.0
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 100.0
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 100.0
PRK10930419 FtsH protease regulator HflK; Provisional 100.0
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 100.0
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 100.0
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 100.0
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 100.0
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 100.0
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 99.97
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.97
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 99.97
KOG2620|consensus301 99.97
smart00244160 PHB prohibitin homologues. prohibitin homologues 99.94
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.94
KOG3090|consensus290 99.91
cd03407262 Band_7_4 A subgroup of the band 7 domain of flotil 99.87
PRK10930419 FtsH protease regulator HflK; Provisional 99.85
KOG2668|consensus428 99.84
KOG2621|consensus288 99.84
cd03403215 Band_7_stomatin_like Band_7_stomatin_like: A subgr 99.79
PRK11029334 FtsH protease regulator HflC; Provisional 99.78
KOG3083|consensus271 99.78
COG0330291 HflC Membrane protease subunits, stomatin/prohibit 99.78
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 99.77
TIGR01933261 hflK HflK protein. HflK and HflC are paralogs enco 99.76
TIGR01932317 hflC HflC protein. HflK and HflC are paralogs enco 99.74
KOG2962|consensus322 99.73
COG2268548 Uncharacterized protein conserved in bacteria [Fun 99.73
cd03404266 Band_7_HflK Band_7_HflK: The band 7 domain of flot 99.68
cd03405242 Band_7_HflC Band_7_HflC: The band 7 domain of flot 99.67
cd03406280 Band_7_3 A subgroup of the band 7 domain of flotil 99.65
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.64
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 99.62
KOG2620|consensus301 99.59
cd03401196 Band_7_prohibitin Band_7_prohibitin. A subgroup of 99.5
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 99.38
cd03402219 Band_7_2 A subgroup of the band 7 domain of flotil 99.38
KOG3090|consensus290 99.31
PF01145179 Band_7: SPFH domain / Band 7 family; InterPro: IPR 99.02
PF13421211 Band_7_1: SPFH domain-Band 7 family 99.01
cd03400124 Band_7_1 A subgroup of the band 7 domain of flotil 99.0
KOG3083|consensus271 98.94
cd03399128 Band_7_flotillin Band_7_flotillin: a subgroup of t 98.74
smart00244160 PHB prohibitin homologues. prohibitin homologues 98.68
cd03408207 Band_7_5 A subgroup of the band 7 domain of flotil 98.53
cd02106121 Band_7 The band 7 domain of flotillin (reggie) lik 98.51
KOG2962|consensus322 98.22
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 98.2
PTZ00491850 major vault protein; Provisional 98.03
KOG2668|consensus 428 97.61
PF13421211 Band_7_1: SPFH domain-Band 7 family 96.19
COG2268 548 Uncharacterized protein conserved in bacteria [Fun 96.0
PF12127316 YdfA_immunity: SigmaW regulon antibacterial; Inter 94.55
COG1580159 FliL Flagellar basal body-associated protein [Cell 92.13
PRK13665316 hypothetical protein; Provisional 92.05
PTZ00491850 major vault protein; Provisional 89.11
COG4260345 Membrane protease subunit, stomatin/prohibitin fam 87.94
PF0374899 FliL: Flagellar basal body-associated protein FliL 85.41
PF11978118 MVP_shoulder: Shoulder domain; InterPro: IPR021870 84.92
PRK07718142 fliL flagellar basal body-associated protein FliL; 84.92
PRK06654181 fliL flagellar basal body-associated protein FliL; 80.54
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.5e-40  Score=327.73  Aligned_cols=255  Identities=19%  Similarity=0.331  Sum_probs=218.9

Q ss_pred             EEeeCCceeeecceeEEEEEEeceEeeC-----cccCCceeEEcCceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEE
Q psy9223          57 VSFDVPPQEIVQEYERAVIFRLGRVREG-----GPRGPGLFFILPCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAV  131 (457)
Q Consensus        57 ~~~~~~~~~~V~~ge~~Vv~~~Gk~~~~-----~~~~pGl~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~  131 (457)
                      ++|+++|+++|++||+|||++|||+++.     .+++|||||++||++++.++|+|.+.++.+++.++|+|++.|+||++
T Consensus        13 ~~~l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~   92 (334)
T PRK11029         13 LVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSY   92 (334)
T ss_pred             HHHHHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCCEEEEEEE
Confidence            4577889999999999999999999842     15899999999999999999999999999999999999999999999


Q ss_pred             EEEEec------------------hhHHHHHHHHHHHHHccCcHHHHHh-hHHHHHHHHHHHHHhh--------------
Q psy9223         132 VYYRRF------------------LRKRLLAATTLRNVLGTRNLAEILS-ERESISHAMQANLDHA--------------  178 (457)
Q Consensus       132 v~yrI~------------------~~l~~~~~~alR~vi~~~~l~~l~~-~R~~i~~~i~~~l~~~--------------  178 (457)
                      ++|||.                  ..+.+.+++++|+++|+++++++++ +|+++..++++.+++.              
T Consensus        93 V~yrI~Dp~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~  172 (334)
T PRK11029         93 IKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAAD  172 (334)
T ss_pred             EEEEECCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            999997                  2234567899999999999999998 5999999999999854              


Q ss_pred             -------------------------ccccCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9223         179 -------------------------TEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKE  233 (457)
Q Consensus       179 -------------------------l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa~~~ae  233 (457)
                                               +..|||+|.+|.|++++||+++.++|+++++|||+++|...+|||++++.+..++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~  252 (334)
T PRK11029        173 DAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRAT  252 (334)
T ss_pred             cccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     4789999999999999999999999999999999999999999999999877766


Q ss_pred             HHHHHhcChHHHHHHHHHHHHHhhhcCCCeeEeccchhhhhhhhhhhhhhHhhhhhcccccCcccHHHHHhhHHHHHHHH
Q psy9223         234 AADVIVESPAALQLRYLQTLNSISQEKNSTIIFPIPVDIISTFMKNHSTRLLAATTLRNVLGTRNLAEILSERESISHAM  313 (457)
Q Consensus       234 a~~~~~~~~~~~~~r~le~l~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~R~~v~~~~l~~vl~~R~~i~~~i  313 (457)
                      |...                                                                            
T Consensus       253 A~~e----------------------------------------------------------------------------  256 (334)
T PRK11029        253 ADYE----------------------------------------------------------------------------  256 (334)
T ss_pred             HHhH----------------------------------------------------------------------------
Confidence            6210                                                                            


Q ss_pred             HHHHHHhhcccCceEEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy9223         314 QANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQKRLQK  393 (457)
Q Consensus       314 ~~~~~~~~~~~Gi~v~~v~i~~i~~p~~v~~a~~~~~~Aer~~~a~~~~Aeg~~~aa~~~~~a~~~~~~~~a~~~~~~~~  393 (457)
                                                       ..++.|+-++++.+++|||++++.+..++|   +.++          
T Consensus       257 ---------------------------------~~~~~AeA~~~a~i~~aegeA~a~~~~~~a---~~~~----------  290 (334)
T PRK11029        257 ---------------------------------VTRTLAEAERQGRIMRGEGDAEAAKLFADA---FSQD----------  290 (334)
T ss_pred             ---------------------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HhcC----------
Confidence                                             011224444677888888888888777766   3333          


Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHhhh
Q psy9223         394 IQTNYLFQLRYLQTLQSISQEKNSTIVFPIPLRYLQTLNSIS  435 (457)
Q Consensus       394 a~~~~~~~~r~le~~~~i~~~~~~~~v~~~~~~~~~~~~~~~  435 (457)
                        ++|+.+++||++|++.++++++++++|++++|+.+|+++.
T Consensus       291 --p~~~~~~~~lea~~~~~~~~~~~~vl~~~~~~~~~l~~~~  330 (334)
T PRK11029        291 --PDFYAFIRSLRAYENSFSGNQDVMVLSPDSDFFRYMKTPT  330 (334)
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCcEEEECCChHHHHHhhccc
Confidence              4567799999999999988888899999999999997553

>KOG2621|consensus Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2620|consensus Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>KOG3090|consensus Back     alignment and domain information
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>PRK10930 FtsH protease regulator HflK; Provisional Back     alignment and domain information
>KOG2668|consensus Back     alignment and domain information
>KOG2621|consensus Back     alignment and domain information
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins) Back     alignment and domain information
>PRK11029 FtsH protease regulator HflC; Provisional Back     alignment and domain information
>KOG3083|consensus Back     alignment and domain information
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>TIGR01933 hflK HflK protein Back     alignment and domain information
>TIGR01932 hflC HflC protein Back     alignment and domain information
>KOG2962|consensus Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2620|consensus Back     alignment and domain information
>cd03401 Band_7_prohibitin Band_7_prohibitin Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3090|consensus Back     alignment and domain information
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG3083|consensus Back     alignment and domain information
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>smart00244 PHB prohibitin homologues Back     alignment and domain information
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins Back     alignment and domain information
>KOG2962|consensus Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>KOG2668|consensus Back     alignment and domain information
>PF13421 Band_7_1: SPFH domain-Band 7 family Back     alignment and domain information
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365 Back     alignment and domain information
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion] Back     alignment and domain information
>PRK13665 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00491 major vault protein; Provisional Back     alignment and domain information
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism] Back     alignment and domain information
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis [] Back     alignment and domain information
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain [] Back     alignment and domain information
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
4fvf_A128 Spfh Domain Of Mouse Stomatin (Crystal Form 1) Leng 5e-31
4fvf_A128 Spfh Domain Of Mouse Stomatin (Crystal Form 1) Leng 2e-21
4fvg_A133 Spfh Domain Of Mouse Stomatin (Crystal Form 3) Leng 2e-30
4fvg_A133 Spfh Domain Of Mouse Stomatin (Crystal Form 3) Leng 2e-21
4fvj_A133 Spfh Domain Of The Mouse Stomatin (Crystal Form 2) 9e-30
4fvj_A133 Spfh Domain Of The Mouse Stomatin (Crystal Form 2) 2e-21
3bk6_A188 Crystal Structure Of A Core Domain Of Stomatin From 1e-25
3bk6_A188 Crystal Structure Of A Core Domain Of Stomatin From 1e-19
2rpb_A113 The Solution Structure Of Membrane Protein Length = 6e-07
2rpb_A113 The Solution Structure Of Membrane Protein Length = 6e-06
>pdb|4FVF|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 1) Length = 128 Back     alignment and structure 
Iteration: 1

 Score =  132 bits (331), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 78/119 (65%), Gaps = 13/119 (10%)
Query: 96  PCIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYY-------------XXXXXXXX 142
           PC D   KVD+RT+SFD+PPQEV++KDSVT+ VD VVYY                     
Sbjct: 1   PCTDSLIKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRL 60
Query: 143 XXXXXXXNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQ 201
                  N LGT+NL++ILS+RE I+H MQ+ LD AT+ WG+KVERVEIKDV+LP QLQ
Sbjct: 61  LAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQ 119
>pdb|4FVF|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 1) Length = 128 Back     alignment and structure
>pdb|4FVG|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 3) Length = 133 Back     alignment and structure
>pdb|4FVG|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 3) Length = 133 Back     alignment and structure
>pdb|4FVJ|A Chain A, Spfh Domain Of The Mouse Stomatin (Crystal Form 2) Length = 133 Back     alignment and structure
>pdb|4FVJ|A Chain A, Spfh Domain Of The Mouse Stomatin (Crystal Form 2) Length = 133 Back     alignment and structure
>pdb|3BK6|A Chain A, Crystal Structure Of A Core Domain Of Stomatin From Pyrococcus Horikoshii Length = 188 Back     alignment and structure
>pdb|3BK6|A Chain A, Crystal Structure Of A Core Domain Of Stomatin From Pyrococcus Horikoshii Length = 188 Back     alignment and structure
>pdb|2RPB|A Chain A, The Solution Structure Of Membrane Protein Length = 113 Back     alignment and structure
>pdb|2RPB|A Chain A, The Solution Structure Of Membrane Protein Length = 113 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query457
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 1e-86
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 5e-63
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 1e-57
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 4e-35
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 6e-37
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 3e-22
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 3e-28
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 6e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
 Score =  262 bits (672), Expect = 1e-86
 Identities = 80/178 (44%), Positives = 119/178 (66%), Gaps = 13/178 (7%)

Query: 98  IDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR------------RFLRK-RLLA 144
            +    VDLRT   DVP QE ++KD+V + V+AVVY+R             ++     ++
Sbjct: 3   FEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQIS 62

Query: 145 ATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAM 204
            TTLR+V+G  +L E+LSER+ ++  +Q  +D AT+PWG+KV  VEIKDV LP  +Q+AM
Sbjct: 63  QTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAM 122

Query: 205 AAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPAALQLRYLQTLNSISQEKNS 262
           A +AEA RE RA++  AEAE +A+  L+EAA++I E P ALQLR LQT++ ++ +K++
Sbjct: 123 ARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQTISDVAGDKSN 180
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133 Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Length = 133 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.97
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.9
3bk6_A188 PH stomatin; archaea, trimer, coiled- coil, flotil 99.85
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.81
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 99.71
4fvg_A133 Stomatin; mixed alpha-beta fold, membrane scaffold 99.47
1win_A143 Flotillin 2; BAND 7 domain, structural genomics, r 99.27
2rpb_A113 Hypothetical membrane protein; SPFH domain; NMR {P 98.92
2zuo_A861 MVP, major vault protein; repeat domains, protein- 98.13
2zuo_A861 MVP, major vault protein; repeat domains, protein- 85.22
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.97  E-value=4.6e-31  Score=241.92  Aligned_cols=167  Identities=48%  Similarity=0.740  Sum_probs=152.4

Q ss_pred             ceeEEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec-------------hhHHHHHHHHHHHHHccCcHHHHHhh
Q psy9223          97 CIDDYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF-------------LRKRLLAATTLRNVLGTRNLAEILSE  163 (457)
Q Consensus        97 ~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~-------------~~l~~~~~~alR~vi~~~~l~~l~~~  163 (457)
                      |++++.++|+|.++++++++.++|+|+++|+|+++++|||.             ..+.+.+++++|+++|++++++++++
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell~~   81 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELLSE   81 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHHHC
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHHhh
Confidence            67999999999999999989999999999999999999998             67788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH
Q psy9223         164 RESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEATREGRAKVIAAEAEMKASRALKEAADVIVESPA  243 (457)
Q Consensus       164 R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae~~~~a~~~~Ae~e~~aa~~~aea~~~~~~~~~  243 (457)
                      |+.|+..+++.+++.+++|||+|.+|.|++|+||+++.++|+++++||++++|++++|+||+++++..++|++.|+.+|.
T Consensus        82 R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a~~~~a~a~~~~~~~~~  161 (188)
T 3bk6_A           82 RDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPM  161 (188)
T ss_dssp             HHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCe
Q psy9223         244 ALQLRYLQTLNSISQEKNST  263 (457)
Q Consensus       244 ~~~~r~le~l~~~~~~~~~~  263 (457)
                      ++++||||++++++.++|++
T Consensus       162 ~l~lr~le~~~~ia~~~~~~  181 (188)
T 3bk6_A          162 ALQLRTLQTISDVAGDKSNL  181 (188)
T ss_dssp             HHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHHHhcCCCCc
Confidence            99999999999999877665
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A Back     alignment and structure
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Back     alignment and structure
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 457
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 1e-23
d1wina_143 d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [T 9e-15
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.4 bits (234), Expect = 1e-23
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 22/133 (16%)

Query: 103 KVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYR-------------RFLRK--------- 140
           ++ L  ++     ++V + + V L V  V   +             +FL K         
Sbjct: 9   RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVV 68

Query: 141 RLLAATTLRNVLGTRNLAEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQL 200
                  LR++LGT  + +I  +R+  +  ++          G+++    IKDV      
Sbjct: 69  LQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDY 128

Query: 201 QRAMAAEAEATRE 213
             ++     +   
Sbjct: 129 LSSLGKTQTSGPS 141
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query457
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.73
d1wina_143 Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} 98.99
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.1e-19  Score=152.92  Aligned_cols=112  Identities=16%  Similarity=0.229  Sum_probs=105.1

Q ss_pred             EEEEEeeeEEEeecCCCccccCCCcEEEEeEEEEEEec----------------------hhHHHHHHHHHHHHHccCcH
Q psy9223         100 DYAKVDLRTVSFDVPPQEVMSKDSVTLHVDAVVYYRRF----------------------LRKRLLAATTLRNVLGTRNL  157 (457)
Q Consensus       100 ~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~----------------------~~l~~~~~~alR~vi~~~~l  157 (457)
                      .+.++|++.++++++.++++|+||++|+|+++++|||.                      ..+++.+++++|+++|++++
T Consensus         6 s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~l   85 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV   85 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             ceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            45789999999999999999999999999999999999                      45778889999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHhhccccCcEEEEEEeecCCCcHHHHHHHHHHHHHH
Q psy9223         158 AEILSERESISHAMQANLDHATEPWGVKVERVEIKDVRLPQQLQRAMAAEAEAT  211 (457)
Q Consensus       158 ~~l~~~R~~i~~~i~~~l~~~l~~~GI~i~~v~I~~i~~p~~v~~a~~~~~~Ae  211 (457)
                      ++++++|+.|.+.+++.+++.+.+|||+|.+|.|+||++|+++.++|.++++|.
T Consensus        86 ~el~~~R~~i~~~v~~~i~~~l~~~Gi~v~~v~I~dI~~~~~~~~a~~~~q~A~  139 (143)
T d1wina_          86 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG  139 (143)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHhCeEEEEEEEEecCCcHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998876653
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure