Psyllid ID: psy9227

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
MLSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSSAGGASSRSASK
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHcccccccccccccc
MLSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKlndraklkpgsknlrrEEWDRERKKRTNRMLIAMVFIFGfcwspinvINLVNDLHEDVAGWFYYYVVFFITHSIamsstcynpfLYAWLNDNFRKEFKQVLpffssaggassrsask
MLSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLklndraklkpgsknlrreewdrerkKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPffssaggassrsask
MLSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLrreewdrerkkrTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFssaggassrsasK
******GLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLN*************************NRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFF*************
*******LGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLN*************************NRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLP***************
MLSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSS***********
MLSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRA****************ERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSSAG*********
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLSLSKGLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSSAGGASSRSASK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query156 2.2.26 [Sep-21-2011]
Q9VNM1485 Neuropeptide F receptor O no N/A 0.839 0.270 0.368 3e-19
Q61212371 Neuropeptide Y receptor t yes N/A 0.826 0.347 0.350 3e-18
Q64121370 Prolactin-releasing pepti yes N/A 0.679 0.286 0.416 4e-18
Q6VMN6370 Prolactin-releasing pepti no N/A 0.679 0.286 0.416 6e-18
Q4EW11370 Prolactin-releasing pepti yes N/A 0.679 0.286 0.407 3e-17
P79217371 Neuropeptide Y receptor t no N/A 0.775 0.326 0.375 3e-17
P49683370 Prolactin-releasing pepti yes N/A 0.679 0.286 0.416 1e-16
Q61041375 Neuropeptide Y receptor t no N/A 0.807 0.336 0.330 6e-16
P25931464 Neuropeptide Y receptor O no N/A 0.794 0.267 0.330 1e-15
Q9DDN6385 Neuropeptide Y receptor t no N/A 0.794 0.322 0.343 5e-15
>sp|Q9VNM1|NPFR1_DROME Neuropeptide F receptor OS=Drosophila melanogaster GN=NPFR1 PE=1 SV=3 Back     alignment and function desciption
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 9   GLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERK-KRTN 67
           G   Y       Q+++P  I++  Y  +  KL  R  +     +  + + +R R+ KRTN
Sbjct: 257 GRFYYSIFSLCVQYLVPILIVSVAYFGIYNKLKSRITVVAVQASSAQRKVERGRRMKRTN 316

Query: 68  RMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAW 127
            +LI++  IFG  W P+N  NL  D+           V + I H I MSS C NP LY W
Sbjct: 317 CLLISIAIIFGVSWLPLNFFNLYADMERSPVTQ-SMLVRYAICHMIGMSSACSNPLLYGW 375

Query: 128 LNDNFRKEFKQVL 140
           LNDNFRKEF+++L
Sbjct: 376 LNDNFRKEFQELL 388
Receptor for NPF. Integral part of the sensory system that mediates food signaling, providing the neural basis for the regulation of food response; coordinates larval foraging and social behavior changes during development. Required in dopaminergic (DA) neurons that innervate the mushroom body for satiety to suppress appetitive memory performance; a key factor in the internal state of hunger in the brain. NPF neurons coordinately modulate diverse sensory and motor neurons important for feeding, flight, and locomotion. NPF/NPFR1 pathway exerts its suppressive effect on larval aversion to diverse stressful stimuli (chemical stress and noxious heat) through attenuation of TRP channel-induced neuronal excitation. NPF neural signaling system plays a physiological role in acute modulation of alcohol sensitivity in adults, rather than a general response to intoxication by sedative agents. Activation and inhibition of the NPF system reduces and enhances ethanol preference, respectively. Sexual experience, the NPF system activity and ethanol consumption are all linked; sexual deprivation is a major contributor to enhanced ethanol preference.
Drosophila melanogaster (taxid: 7227)
>sp|Q61212|NPY6R_MOUSE Neuropeptide Y receptor type 6 OS=Mus musculus GN=Npy6r PE=2 SV=1 Back     alignment and function description
>sp|Q64121|PRLHR_RAT Prolactin-releasing peptide receptor OS=Rattus norvegicus GN=Prlhr PE=2 SV=1 Back     alignment and function description
>sp|Q6VMN6|PRLHR_MOUSE Prolactin-releasing peptide receptor OS=Mus musculus GN=Prlhr PE=2 SV=2 Back     alignment and function description
>sp|Q4EW11|PRLHR_BOVIN Prolactin-releasing peptide receptor OS=Bos taurus GN=PRLHR PE=3 SV=1 Back     alignment and function description
>sp|P79217|NPY6R_RABIT Neuropeptide Y receptor type 6 OS=Oryctolagus cuniculus GN=NPY6R PE=2 SV=1 Back     alignment and function description
>sp|P49683|PRLHR_HUMAN Prolactin-releasing peptide receptor OS=Homo sapiens GN=PRLHR PE=1 SV=3 Back     alignment and function description
>sp|Q61041|NPY4R_MOUSE Neuropeptide Y receptor type 4 OS=Mus musculus GN=Ppyr1 PE=2 SV=2 Back     alignment and function description
>sp|P25931|NPYR_DROME Neuropeptide Y receptor OS=Drosophila melanogaster GN=NepYr PE=2 SV=2 Back     alignment and function description
>sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 OS=Gallus gallus GN=NPY2R PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
357606199 260 neuropeptide receptor A11 [Danaus plexip 0.878 0.526 0.664 5e-51
380012577 397 PREDICTED: prolactin-releasing peptide r 0.865 0.340 0.674 9e-51
110765902 393 PREDICTED: neuropeptide Y receptor type 0.929 0.368 0.623 1e-50
157136190 529 neuropeptide f receptor 76f [Aedes aegyp 0.929 0.274 0.620 3e-50
157117266 529 neuropeptide f receptor 76f [Aedes aegyp 0.929 0.274 0.620 3e-50
350400273 392 PREDICTED: prolactin-releasing peptide r 0.929 0.369 0.630 4e-50
307184614 400 Prolactin-releasing peptide receptor [Ca 0.910 0.355 0.622 6e-50
340717887 389 PREDICTED: prolactin-releasing peptide r 0.929 0.372 0.630 1e-49
312377295 777 hypothetical protein AND_11448 [Anophele 0.871 0.175 0.647 1e-49
90654900 575 short neuropeptide F receptor [Anopheles 0.871 0.236 0.639 2e-49
>gi|357606199|gb|EHJ64950.1| neuropeptide receptor A11 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 91/137 (66%), Positives = 109/137 (79%)

Query: 12  IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLI 71
           I+G      QF+IPF +IA CY  VS++LNDRA+ KPG+KN RREE DR+RKKRTNRMLI
Sbjct: 24  IFGVFTTVLQFLIPFLVIAICYTCVSIRLNDRARSKPGAKNTRREEADRDRKKRTNRMLI 83

Query: 72  AMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDN 131
           +MV IFG  W P+N+IN+ ND +  +  W YYYV FF+ HS+AM+STCYNPFLYAWLN+N
Sbjct: 84  SMVAIFGTSWLPLNLINIFNDFYAQMTEWNYYYVSFFLAHSMAMASTCYNPFLYAWLNEN 143

Query: 132 FRKEFKQVLPFFSSAGG 148
           FRKEFKQVLPFF S GG
Sbjct: 144 FRKEFKQVLPFFESTGG 160

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380012577|ref|XP_003690356.1| PREDICTED: prolactin-releasing peptide receptor-like [Apis florea] Back     alignment and taxonomy information
>gi|110765902|ref|XP_001123033.1| PREDICTED: neuropeptide Y receptor type 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|157136190|ref|XP_001663694.1| neuropeptide f receptor 76f [Aedes aegypti] Back     alignment and taxonomy information
>gi|157117266|ref|XP_001658724.1| neuropeptide f receptor 76f [Aedes aegypti] Back     alignment and taxonomy information
>gi|350400273|ref|XP_003485782.1| PREDICTED: prolactin-releasing peptide receptor-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307184614|gb|EFN70952.1| Prolactin-releasing peptide receptor [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340717887|ref|XP_003397405.1| PREDICTED: prolactin-releasing peptide receptor-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|312377295|gb|EFR24159.1| hypothetical protein AND_11448 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|90654900|gb|ABD96049.1| short neuropeptide F receptor [Anopheles gambiae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
FB|FBgn0036934 600 sNPF-R "short neuropeptide F r 0.846 0.22 0.560 1.1e-38
WB|WBGene00009619402 npr-6 [Caenorhabditis elegans 0.788 0.305 0.384 6.2e-20
UNIPROTKB|E2RQK3370 PRLHR "Uncharacterized protein 0.814 0.343 0.351 1.1e-19
RGD|71037370 Prlhr "prolactin releasing hor 0.814 0.343 0.341 1.8e-19
UNIPROTKB|Q64121370 Prlhr "Prolactin-releasing pep 0.814 0.343 0.341 1.8e-19
MGI|MGI:2135956370 Prlhr "prolactin releasing hor 0.814 0.343 0.341 2.4e-19
UNIPROTKB|P49683370 PRLHR "Prolactin-releasing pep 0.814 0.343 0.333 5.4e-19
UNIPROTKB|F1S4P9370 Ssc.95577 "Uncharacterized pro 0.814 0.343 0.333 7.1e-19
UNIPROTKB|Q4EW11370 PRLHR "Prolactin-releasing pep 0.814 0.343 0.325 2.1e-18
UNIPROTKB|F1NA44318 LOC431251 "Uncharacterized pro 0.788 0.386 0.330 3.6e-18
FB|FBgn0036934 sNPF-R "short neuropeptide F receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 414 (150.8 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 74/132 (56%), Positives = 93/132 (70%)

Query:    12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLI 71
             ++G I    QF++PFFII+ CY+ +S+KLN RA+ KPGSK+             TNRMLI
Sbjct:   280 VFGAITTTLQFVLPFFIISICYVWISVKLNQRARAKPGSKSSRREEADRDRKKRTNRMLI 339

Query:    72 AMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDN 131
             AMV +FG  W PINV+N+ +D  +    W +Y + FF+ HSIAMSSTCYNPFLYAWLN+N
Sbjct:   340 AMVAVFGLSWLPINVVNIFDDFDDKSNEWRFYILFFFVAHSIAMSSTCYNPFLYAWLNEN 399

Query:   132 FRKEFKQVLPFF 143
             FRKEFK VLP F
Sbjct:   400 FRKEFKHVLPCF 411
GO:0004930 "G-protein coupled receptor activity" evidence=ISS
GO:0007218 "neuropeptide signaling pathway" evidence=ISS
GO:0004983 "neuropeptide Y receptor activity" evidence=IEA;ISS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA
GO:0004995 "tachykinin receptor activity" evidence=ISS
GO:0070374 "positive regulation of ERK1 and ERK2 cascade" evidence=IMP
GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP
WB|WBGene00009619 npr-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQK3 PRLHR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|71037 Prlhr "prolactin releasing hormone receptor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q64121 Prlhr "Prolactin-releasing peptide receptor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2135956 Prlhr "prolactin releasing hormone receptor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P49683 PRLHR "Prolactin-releasing peptide receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4P9 Ssc.95577 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q4EW11 PRLHR "Prolactin-releasing peptide receptor" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NA44 LOC431251 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-17
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 1e-07
PHA02638417 PHA02638, PHA02638, CC chemokine receptor-like pro 2e-07
PHA02834323 PHA02834, PHA02834, chemokine receptor-like protei 2e-04
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 8   LGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTN 67
                Y  +     F++P  +I  CY  +   L  RA+        +R      ++++  
Sbjct: 138 STKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQARAKRS---SSKERKAA 194

Query: 68  RMLIAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLY 125
           +ML+ +V +F  CW P +++ L++ L    + W        IT  +A  ++C NP +Y
Sbjct: 195 KMLLVVVVVFVLCWLPYHIVLLLDSLCPL-SIWRLLPTALLITLWLAYVNSCLNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 156
KOG4219|consensus423 99.92
PHA03234338 DNA packaging protein UL33; Provisional 99.9
PHA03235409 DNA packaging protein UL33; Provisional 99.89
PHA02834323 chemokine receptor-like protein; Provisional 99.88
PHA02638417 CC chemokine receptor-like protein; Provisional 99.86
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.82
KOG4220|consensus503 99.74
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.73
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.46
KOG2087|consensus363 99.14
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 99.09
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.87
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 98.62
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.18
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 97.92
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 97.86
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 97.77
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 97.6
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 97.59
PF02101405 Ocular_alb: Ocular albinism type 1 protein; InterP 97.52
PF1197076 Git3_C: G protein-coupled glucose receptor regulat 97.28
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 96.82
KOG4193|consensus610 96.68
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 96.27
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 96.22
PF03125365 Sre: C. elegans Sre G protein-coupled chemorecepto 96.03
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 95.76
KOG4220|consensus 503 95.24
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 94.33
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 92.63
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 91.46
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 91.42
KOG4564|consensus473 91.19
>KOG4219|consensus Back     alignment and domain information 
Probab=99.92  E-value=2.4e-24  Score=157.47  Aligned_cols=130  Identities=29%  Similarity=0.636  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy9227          12 IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINVINLVN   91 (156)
Q Consensus        12 ~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~   91 (156)
                      .|..+..++.+++|++++..+|..|.+++|.++.  .+. ++.++....++++|+.+|++++++.|.+||+||++..++.
T Consensus       208 ~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~--~gd-~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~  284 (423)
T KOG4219|consen  208 GYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRI--PGD-QQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILN  284 (423)
T ss_pred             ceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccC--ccc-hhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHH
Confidence            3888899999999999999999999999998652  221 1124556678889999999999999999999999999998


Q ss_pred             HHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhccccc
Q psy9227          92 DLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFS  144 (156)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~  144 (156)
                      ....+..........+....||+++|++.||+||+++|++||.++++.++|+.
T Consensus       285 ~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp  337 (423)
T KOG4219|consen  285 ATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP  337 (423)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence            88888888788888999999999999999999999999999999999998874

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
2lnl_A296 Structure Of Human Cxcr1 In Phospholipid Bilayers L 9e-06
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 4e-05
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 6e-05
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 6e-05
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 1e-04
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 1e-04
2x72_A349 Crystal Structure Of The Constitutively Active E113 1e-04
2ks9_A364 Solution Conformation Of Substance P In Water Compl 2e-04
4grv_A510 The Crystal Structure Of The Neurotensin Receptor N 5e-04
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 7e-04
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 21/125 (16%)
Query: 22  FIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLXXXXXXXXXXXXTNRMLIAMVFIFGFCW 81
           FI+P F++ FCY      L    K   G K+               R++ A+V IF  CW
Sbjct: 183 FIVPLFVMLFCY---GFTLRTLFKAHMGQKH------------RAMRVIFAVVLIFLLCW 227
Query: 82  SPINVINLVNDL------HEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKE 135
            P N++ L + L       E              T  +    +C NP +YA++  NFR  
Sbjct: 228 LPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHG 287
Query: 136 FKQVL 140
           F ++L
Sbjct: 288 FLKIL 292
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 5e-43
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 8e-36
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 2e-26
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 6e-26
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 2e-16
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-13
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 4e-12
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 7e-04
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 4e-10
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 1e-09
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 1e-08
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 3e-08
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 1e-07
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 1e-07
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 6e-07
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 8e-06
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
 Score =  144 bits (366), Expect = 5e-43
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 3/145 (2%)

Query: 11  LIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRML 70
            +Y   +    + +P  +I + Y  V + L   A   PG  + R  E     K++  +M+
Sbjct: 194 KVYHICVTVLIYFLPLLVIGYAYTVVGITL--WASEIPGDSSDRYHEQVS-AKRKVVKMM 250

Query: 71  IAMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLND 130
           I +V  F  CW P ++  L+  ++ D+    +   V+     +AMSST YNP +Y  LND
Sbjct: 251 IVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLND 310

Query: 131 NFRKEFKQVLPFFSSAGGASSRSAS 155
            FR  FK                  
Sbjct: 311 RFRLGFKHAFRCCPFISAGDYEGLE 335
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
4grv_A510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.94
3vw7_A484 Proteinase-activated receptor 1, lysozyme; high re 99.92
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.92
2rh1_A500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.92
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 99.91
3odu_A502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.91
3eml_A488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.91
4eiy_A447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.9
4dkl_A464 MU-type opioid receptor, lysozyme chimera; G-prote 99.9
3uon_A467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.89
3rze_A452 Histamine H1 receptor, lysozyme chimera; structura 99.89
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.89
3pbl_A481 D(3) dopamine receptor, lysozyme chimera; structur 99.89
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.89
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.88
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.88
3v2y_A520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.87
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.87
2koe_A40 Human cannabinoid receptor 1 - helix 7/8 peptide; 99.11
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 98.6
2z73_A448 Rhodopsin; visual pigment, GQ-type, G-protein coup 80.67
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.94  E-value=7.8e-28  Score=185.75  Aligned_cols=85  Identities=26%  Similarity=0.470  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccch----hHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHH
Q psy9227          61 ERKKRTNRMLIAMVFIFGFCWSPINVINLVNDLHEDVAG----WFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEF  136 (156)
Q Consensus        61 ~~~~k~~~~~~~i~~~f~v~~~P~~i~~l~~~~~~~~~~----~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~  136 (156)
                      ++|+|+++|+++++++|++||+||++..++..+.++...    ......+..++.+|+++||++||+||+++|++||++|
T Consensus       402 ~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aF  481 (510)
T 4grv_A          402 QALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVF  481 (510)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            357899999999999999999999999999887665422    2334567788999999999999999999999999999


Q ss_pred             Hhhcccccc
Q psy9227         137 KQVLPFFSS  145 (156)
Q Consensus       137 ~~~~~~~~~  145 (156)
                      +++++|+++
T Consensus       482 k~iL~C~C~  490 (510)
T 4grv_A          482 LSTLACLCP  490 (510)
T ss_dssp             ---------
T ss_pred             HHHHhhcCC
Confidence            999976543
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 156
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 3e-15
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.2 bits (168), Expect = 3e-15
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 9/144 (6%)

Query: 12  IYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLI 71
            +   M    FIIP  +I FCY ++   + +       +   +     ++ +K   RM+I
Sbjct: 202 SFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEA------AAQQQESATTQKAEKEVTRMVI 255

Query: 72  AMVFIFGFCWSPINVINLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDN 131
            MV  F  CW P   +      H+   G  +  +   I    A +S  YNP +Y  +N  
Sbjct: 256 IMVIAFLICWLPYAGVAFYIFTHQ---GSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQ 312

Query: 132 FRKEFKQVLPFFSSAGGASSRSAS 155
           FR      L    +  G    S +
Sbjct: 313 FRNCMVTTLCCGKNPLGDDEASTT 336

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.89
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=9.9e-23  Score=147.70  Aligned_cols=134  Identities=25%  Similarity=0.390  Sum_probs=107.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy9227           7 GLGLLIYGTIMAFSQFIIPFFIIAFCYIKVSLKLNDRAKLKPGSKNLRREEWDRERKKRTNRMLIAMVFIFGFCWSPINV   86 (156)
Q Consensus         7 ~~~~~~y~~~~~~~~~~lPl~v~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~~~f~v~~~P~~i   86 (156)
                      ......|.++...+.+++|+++++++|.++.+.++++.++.+..      ....++++|+++++++++++|++||+|+.+
T Consensus       197 ~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i  270 (348)
T d1u19a_         197 ETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQES------ATTQKAEKEVTRMVIIMVIAFLICWLPYAG  270 (348)
T ss_dssp             GGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCSS------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchh------hhhHHHHhhHhheEEEeehHHHHHhhHHHh
Confidence            34566788888888899999999999999998887765543332      223456789999999999999999999999


Q ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhHHHHHhcCHHHHHHHHhhcccccccCCC
Q psy9227          87 INLVNDLHEDVAGWFYYYVVFFITHSIAMSSTCYNPFLYAWLNDNFRKEFKQVLPFFSSAGGA  149 (156)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP~iY~~~~~~fr~~~~~~~~~~~~~~~~  149 (156)
                      ..++..........   .....+..+++.+|+++||+||++++++||++++++++|+++...+
T Consensus       271 ~~~~~~~~~~~~~~---~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c~~~~~~~  330 (348)
T d1u19a_         271 VAFYIFTHQGSDFG---PIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGD  330 (348)
T ss_dssp             HHHHHHHTTTSCCC---HHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCCCTTT
T ss_pred             hhheeeccCCcccc---HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence            98887665544332   2355678889999999999999999999999999999877665543