Psyllid ID: psy9229

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MHLTGTTNTNSPTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTILMMTPLVKFSGVA
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHcccHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccEEEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHHccEEEccccccccccccccccEEEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHccccccccHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEcccccEEEcccccEEEcccccccccEEEEccccccccEEEEEEEccccccEcEEccEEEEEccEEEccccEEcccccccccEEEEEEEcccccEEEEccccEEEEccccccccccccccEEEEEEEcccccEEEEccccEEEEcccccccccccccccccEEEEcccc
Coil and Loop (DISEMBL)
mhltgttntnsptegntgnllndTYSKMTSDILAERTlgdflsehpgelvrtegntgnllnDTYSKMTSDILAERTlgdflsehpgelvrtgspqfvctvlpphwrsnktlpVAFKVVAlgdvmdgtIVTIragndenyCAELRNCTAVMKNQVAkfndlrfvgrsgrgksFTLTItisssppqvttySKAIKVtvdgpreprsktrksFTLTitisssppqvttySKAIKvtvdgpreprsktilmmtplvkfsgva
Flexible Loop (DISEMBL)
mhltgttntnsptegntgnLLNDTYSKMTSDILAERTLGDFLSEHPGELvrtegntgnllNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKfndlrfvgrsgrgksftltitisssppqvttyskaikvtvdgpreprsktrksftltitisssppqvttyskaikvtvdgpreprsktilmmtplvkfsgva
Low Complexity Region (SEG)
MHLTGTTNTNSPTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTILMMTPLVKFSGVA
Disordered region (IsUnstruct)
*******************************ILAERTLGDFL*******V*****TGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI********************************************************************************
Disordered Region (DISOPRED)
*****************GNLLNDTYSK*********************************************AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK*********************************************************LVKFSGVA
Disordered Region (DISEMBL)
************TEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTILMMTPLVKFSGVA
Disordered Region (DISPRO)
*******************L*NDTYSKMTSDILAERTLGDFLSE*P************LLN**YSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRS*TRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTILMMTPLVKFSG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHLTGTTNTNSPTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTILMMTPLVKFSGVA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q01196	453	Runt-related transcriptio	yes	N/A	0.523	0.298	0.740	1e-57
Q63046	450	Runt-related transcriptio	yes	N/A	0.523	0.3	0.740	1e-57
Q03347	451	Runt-related transcriptio	yes	N/A	0.523	0.299	0.740	1e-57
Q13950	521	Runt-related transcriptio	no	N/A	0.519	0.257	0.746	1e-56
Q6PF39	462	Runt-related transcriptio	N/A	N/A	0.523	0.292	0.733	1e-56
Q08775	607	Runt-related transcriptio	no	N/A	0.519	0.220	0.746	1e-56
Q64131	409	Runt-related transcriptio	no	N/A	0.519	0.327	0.753	6e-56
Q13761	415	Runt-related transcriptio	no	N/A	0.519	0.322	0.753	7e-56
P22814	510	Segmentation protein Runt	no	N/A	0.554	0.280	0.691	5e-55
Q9W349	826	Protein lozenge OS=Drosop	no	N/A	0.515	0.161	0.781	3e-54

>sp|Q01196|RUNX1_HUMAN Runt-related transcription factor 1 OS=Homo sapiens GN=RUNX1 PE=1 SV=3

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 118/135 (87%)

Query: 74  ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
           +R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct: 48  DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107

Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
           GNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct: 108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167

Query: 194 VTVDGPREPRSKTRK 208
           +TVDGPREPR   +K
Sbjct: 168 ITVDGPREPRRHRQK 182

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. The alpha subunit binds DNA and appears to have a role in the development of normal hematopoiesis. Isoform AML-1L interferes with the transactivation activity of RUNX1. Acts synergistically with ELF4 to transactivate the IL-3 promoter and with ELF2 to transactivate the mouse BLK promoter. Inhibits KAT6B-dependent transcriptional activation.
Homo sapiens (taxid: 9606)

>sp|Q63046|RUNX1_RAT Runt-related transcription factor 1 OS=Rattus norvegicus GN=Runx1 PE=2 SV=1

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 118/135 (87%)

Query: 74  ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
           +R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct: 48  DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107

Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
           GNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct: 108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167

Query: 194 VTVDGPREPRSKTRK 208
           +TVDGPREPR   +K
Sbjct: 168 ITVDGPREPRRHRQK 182

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. The alpha subunit binds DNA and appears to have a role in the development of normal hematopoiesis. Inhibits KAT6B-dependent transcriptional activation.

Rattus norvegicus (taxid: 10116)

>sp|Q03347|RUNX1_MOUSE Runt-related transcription factor 1 OS=Mus musculus GN=Runx1 PE=1 SV=1

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 118/135 (87%)

Query: 74  ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
           +R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct: 48  DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107

Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
           GNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct: 108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167

Query: 194 VTVDGPREPRSKTRK 208
           +TVDGPREPR   +K
Sbjct: 168 ITVDGPREPRRHRQK 182

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL-3 and GM-CSF promoters. Essential for the development of normal hematopoiesis. Isoform 4 shows higher binding activities for target genes and binds TCR-beta-E2 and RAG-1 target site with threefold higher affinity than other isoforms. It is less effective in the context of neutrophil terminal differentiation. Acts synergistically with ELF4 to transactivate the IL-3 promoter and with ELF2 to transactivate the BLK promoter. Inhibits KAT6B-dependent transcriptional activation.

Mus musculus (taxid: 10090)

>sp|Q13950|RUNX2_HUMAN Runt-related transcription factor 2 OS=Homo sapiens GN=RUNX2 PE=1 SV=2

 Score =  220 bits (560), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 117/134 (87%)

Query: 75  RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
           RT+ + +++HP ELVRT SP F+C+VLP HWR NKTLPVAFKVVALG+V DGT+VT+ AG
Sbjct: 100 RTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAG 159

Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
           NDENY AELRN +AVMKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIKV
Sbjct: 160 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKV 219

Query: 195 TVDGPREPRSKTRK 208
           TVDGPREPR   +K
Sbjct: 220 TVDGPREPRRHRQK 233

Transcription factor involved in osteoblastic differentiation and skeletal morphogenesis. Essential for the maturation of osteoblasts and both intramembranous and endochondral ossification. CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, osteocalcin, osteopontin, bone sialoprotein, alpha 1(I) collagen, LCK, IL-3 and GM-CSF promoters. In osteoblasts, supports transcription activation: synergizes with SPEN/MINT to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE) (By similarity). Inhibits KAT6B-dependent transcriptional activation.

Homo sapiens (taxid: 9606)

>sp|Q6PF39|RUNX1_XENLA Runt-related transcription factor 1 OS=Xenopus laevis GN=runx1 PE=2 SV=2

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/135 (73%), Positives = 117/135 (86%)

Query: 74  ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
           +R + + LS+HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALG+V DGT+VT+ A
Sbjct: 48  DRNMVEVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGEVPDGTLVTVMA 107

Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
           GNDENY AELRN TA MK+QVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct: 108 GNDENYSAELRNATAAMKSQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167

Query: 194 VTVDGPREPRSKTRK 208
           +TVDGPREPR   +K
Sbjct: 168 ITVDGPREPRRHRQK 182

Involved in primitive hematopoiesis in the embryo.

Xenopus laevis (taxid: 8355)

>sp|Q08775|RUNX2_MOUSE Runt-related transcription factor 2 OS=Mus musculus GN=Runx2 PE=1 SV=2

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 117/134 (87%)

Query: 75  RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
           RT+ + +++HP ELVRT SP F+C+VLP HWR NKTLPVAFKVVALG+V DGT+VT+ AG
Sbjct: 186 RTMVEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGEVPDGTVVTVMAG 245

Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
           NDENY AELRN +AVMKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIKV
Sbjct: 246 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKV 305

Query: 195 TVDGPREPRSKTRK 208
           TVDGPREPR   +K
Sbjct: 306 TVDGPREPRRHRQK 319

Transcription factor involved in osteoblastic differentiation and skeletal morphogenesis. Essential for the maturation of osteoblasts and both intramembranous and endochondral ossification. CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, osteocalcin, osteopontin, bone sialoprotein, alpha 1(I) collagen, LCK, IL-3 and GM-CSF promoters. Inhibits KAT6B-dependent transcriptional activation (By similarity). In osteoblasts, supports transcription activation: synergizes with SPEN/MINT to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE).

Mus musculus (taxid: 10090)

>sp|Q64131|RUNX3_MOUSE Runt-related transcription factor 3 OS=Mus musculus GN=Runx3 PE=2 SV=3

 Score =  217 bits (553), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 101/134 (75%), Positives = 116/134 (86%)

Query: 75  RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
           R++ D L++H GELVRT SP F+C+VLP HWR NKTLPVAFKVVALGDV DGT+VT+ AG
Sbjct: 54  RSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAG 113

Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
           NDENY AELRN +AVMKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++P QV TY +AIKV
Sbjct: 114 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKV 173

Query: 195 TVDGPREPRSKTRK 208
           TVDGPREPR   +K
Sbjct: 174 TVDGPREPRRHRQK 187

Binds to the core site of murine Leukemia virus, the core sequences in the enhancer of the polyomavirus, and also to the enhancers of the T-cell receptor genes. May be involved in the control of cellular proliferation and/or differentiation.

Mus musculus (taxid: 10090)

>sp|Q13761|RUNX3_HUMAN Runt-related transcription factor 3 OS=Homo sapiens GN=RUNX3 PE=1 SV=2

 Score =  217 bits (552), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 101/134 (75%), Positives = 116/134 (86%)

Query: 75  RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
           R++ D L++H GELVRT SP F+C+VLP HWR NKTLPVAFKVVALGDV DGT+VT+ AG
Sbjct: 53  RSMVDVLADHAGELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAG 112

Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
           NDENY AELRN +AVMKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++P QV TY +AIKV
Sbjct: 113 NDENYSAELRNASAVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPTQVATYHRAIKV 172

Query: 195 TVDGPREPRSKTRK 208
           TVDGPREPR   +K
Sbjct: 173 TVDGPREPRRHRQK 186

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, lck, IL-3 and GM-CSF promoters.

Homo sapiens (taxid: 9606)

>sp|P22814|RUNT_DROME Segmentation protein Runt OS=Drosophila melanogaster GN=run PE=2 SV=2

 Score =  214 bits (545), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 118/146 (80%), Gaps = 3/146 (2%)

Query: 65  SKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVM 124
           S MT D+ A  +L + L E+ GEL +TGSP  +C+ LP HWRSNK+LP AFKV+AL DV 
Sbjct: 98  SSMT-DMFA--SLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIALDDVP 154

Query: 125 DGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQ 184
           DGT+V+I+ GNDENYC ELRNCT  MKNQVAKFNDLRFVGRSGRGKSFTLTITI++ P Q
Sbjct: 155 DGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGKSFTLTITIATYPVQ 214

Query: 185 VTTYSKAIKVTVDGPREPRSKTRKSF 210
           + +YSKAIKVTVDGPREPRSK    +
Sbjct: 215 IASYSKAIKVTVDGPREPRSKQSYGY 240

Plays a pivotal role in regulating the expression of other pair-rule genes such as eve, ftz, and h.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W349|LOZEN_DROME Protein lozenge OS=Drosophila melanogaster GN=lz PE=2 SV=2

 Score =  211 bits (538), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 104/133 (78%), Positives = 114/133 (85%)

Query: 74  ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
           ER +     EHPGELVRT +P F+C+ LP HWRSNKTLP+AFKVVAL +V DGT VTIRA
Sbjct: 273 ERLVQKRQQEHPGELVRTSNPYFLCSALPAHWRSNKTLPMAFKVVALAEVGDGTYVTIRA 332

Query: 134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
           GNDEN CAELRN T  MKN VAKFNDLRFVGRSGRGKSFTLTIT+++SPPQV TY+KAIK
Sbjct: 333 GNDENCCAELRNFTTQMKNDVAKFNDLRFVGRSGRGKSFTLTITVATSPPQVATYAKAIK 392

Query: 194 VTVDGPREPRSKT 206
           VTVDGPREPRSKT
Sbjct: 393 VTVDGPREPRSKT 405

Involved in prepatterning photoreceptor precursors in the developing eye; in the larval eye disk it defines a subset of cells as an equipotential group that is competent to respond to the sevenless developmental signal and another subset that confer proper photoreceptor identity by positively regulating the homeo box gene Bar. Involved in the aop/pnt dynamic in a Ras-dependent manner to regulate pros expression. Promotes apoptosis in the pupal eye by directly activating aos and klu. Also modulates hid-and rpr-mediated cell death. Regulates amos function in olfactory sensilla development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
242013869	216	runx1, putative [Pediculus humanus corpo	0.627	0.75	0.883	2e-78
194245228	593	RUNX1 [Aedes aegypti]	0.573	0.249	0.918	2e-77
386764807	646	RunxA, isoform B [Drosophila melanogaste	0.647	0.258	0.796	5e-77
194897273	757	GG17578 [Drosophila erecta] gi|190650273	0.647	0.220	0.796	5e-77
195167431	635	GL15927 [Drosophila persimilis] gi|19410	0.647	0.262	0.796	5e-77
194770327	666	GF15983 [Drosophila ananassae] gi|190614	0.647	0.250	0.796	7e-77
195393144	531	GJ18917 [Drosophila virilis] gi|19414972	0.647	0.314	0.796	8e-77
195130449	513	GI15119 [Drosophila mojavensis] gi|19390	0.647	0.325	0.796	1e-76
357624236	458	hypothetical protein KGM_21075 [Danaus p	0.627	0.353	0.845	3e-76
195482120	378	GE15340 [Drosophila yakuba] gi|194189444	0.655	0.447	0.786	4e-76

>gi|242013869|ref|XP_002427623.1| runx1, putative [Pediculus humanus corporis] gi|212512038|gb|EEB14885.1| runx1, putative [Pediculus humanus corporis]

 Score =  298 bits (763), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 144/163 (88%), Positives = 152/163 (93%), Gaps = 1/163 (0%)

Query: 46  PGELVRTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHW 105
           PG     EG T ++LN+TY+KMTSDILAERTLGDFLSEHPGELVRTGSP FVCTVLPPHW
Sbjct: 10  PGTASSPEG-TASVLNETYTKMTSDILAERTLGDFLSEHPGELVRTGSPHFVCTVLPPHW 68

Query: 106 RSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGR 165
           RSNKTLPVAFKVVALGDV+DGT+VT+RAGNDENYCAELRN TAVMKNQVAKFNDLRFVGR
Sbjct: 69  RSNKTLPVAFKVVALGDVIDGTLVTVRAGNDENYCAELRNGTAVMKNQVAKFNDLRFVGR 128

Query: 166 SGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRK 208
           SGRGKSFTLTITISSSPPQV TY+KAIKVTVDGPREPRSKT K
Sbjct: 129 SGRGKSFTLTITISSSPPQVATYTKAIKVTVDGPREPRSKTIK 171

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194245228|gb|ACF35310.1| RUNX1 [Aedes aegypti]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/148 (91%), Positives = 144/148 (97%)

Query: 59  LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVV 118
           +L DTY+KMTSDILAERTLGDFLSEHPGEL+RTGSP FVCTVLPPHWRSNKTLPVAFKVV
Sbjct: 77  ILQDTYTKMTSDILAERTLGDFLSEHPGELIRTGSPLFVCTVLPPHWRSNKTLPVAFKVV 136

Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
           ALGDV DGT+VT+RAGNDE+YCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI
Sbjct: 137 ALGDVGDGTMVTVRAGNDESYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 196

Query: 179 SSSPPQVTTYSKAIKVTVDGPREPRSKT 206
           S+SPPQV TY+KAIKVTVDGPREPRSKT
Sbjct: 197 STSPPQVATYNKAIKVTVDGPREPRSKT 224

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386764807|ref|NP_001036285.2| RunxA, isoform B [Drosophila melanogaster] gi|383293518|gb|ABI30990.2| RunxA, isoform B [Drosophila melanogaster]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/167 (79%), Positives = 148/167 (88%)

Query: 59  LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVV 118
           LLN+ Y+KMTSDILAERTLGDFL+EHPGEL+RT SP FVCTVLPPHWRSNKTLPVAFKVV
Sbjct: 70  LLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVV 129

Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
           +LGD+MDGT+VT+RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIT+
Sbjct: 130 SLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITV 189

Query: 179 SSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTT 225
           S++PP + TY+KAIKVTVDGPREPRSKTR+           P   +T
Sbjct: 190 STNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFST 236

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194897273|ref|XP_001978624.1| GG17578 [Drosophila erecta] gi|190650273|gb|EDV47551.1| GG17578 [Drosophila erecta]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/167 (79%), Positives = 148/167 (88%)

Query: 59  LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVV 118
           LLN+ Y+KMTSDILAERTLGDFL+EHPGEL+RT SP FVCTVLPPHWRSNKTLPVAFKVV
Sbjct: 181 LLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVV 240

Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
           +LGD+MDGT+VT+RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIT+
Sbjct: 241 SLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITV 300

Query: 179 SSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTT 225
           S++PP + TY+KAIKVTVDGPREPRSKTR+           P   +T
Sbjct: 301 STNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFST 347

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195167431|ref|XP_002024537.1| GL15927 [Drosophila persimilis] gi|194107935|gb|EDW29978.1| GL15927 [Drosophila persimilis]

 Score =  293 bits (750), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 133/167 (79%), Positives = 148/167 (88%)

Query: 59  LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVV 118
           LLN+ Y+KMTSDILAERTLGDFL+EHPGEL+RT SP FVCTVLPPHWRSNKTLPVAFKVV
Sbjct: 59  LLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVV 118

Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
           +LGD+MDGT+VT+RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIT+
Sbjct: 119 SLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITV 178

Query: 179 SSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTT 225
           S++PP + TY+KAIKVTVDGPREPRSKTR+           P   +T
Sbjct: 179 STNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFST 225

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194770327|ref|XP_001967245.1| GF15983 [Drosophila ananassae] gi|190614521|gb|EDV30045.1| GF15983 [Drosophila ananassae]

 Score =  293 bits (749), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 133/167 (79%), Positives = 148/167 (88%)

Query: 59  LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVV 118
           LLN+ Y+KMTSDILAERTLGDFL+EHPGEL+RT SP FVCTVLPPHWRSNKTLPVAFKVV
Sbjct: 80  LLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVV 139

Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
           +LGD+MDGT+VT+RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIT+
Sbjct: 140 SLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITV 199

Query: 179 SSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTT 225
           S++PP + TY+KAIKVTVDGPREPRSKTR+           P   +T
Sbjct: 200 STNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFST 246

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195393144|ref|XP_002055214.1| GJ18917 [Drosophila virilis] gi|194149724|gb|EDW65415.1| GJ18917 [Drosophila virilis]

 Score =  292 bits (748), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 133/167 (79%), Positives = 148/167 (88%)

Query: 59  LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVV 118
           LLN+ Y+KMTSDILAERTLGDFL+EHPGEL+RT SP FVCTVLPPHWRSNKTLPVAFKVV
Sbjct: 73  LLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVV 132

Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
           +LGD+MDGT+VT+RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIT+
Sbjct: 133 SLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITV 192

Query: 179 SSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTT 225
           S++PP + TY+KAIKVTVDGPREPRSKTR+           P   +T
Sbjct: 193 STNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFST 239

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130449|ref|XP_002009664.1| GI15119 [Drosophila mojavensis] gi|193908114|gb|EDW06981.1| GI15119 [Drosophila mojavensis]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 133/167 (79%), Positives = 148/167 (88%)

Query: 59  LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVV 118
           LLN+ Y+KMTSDILAERTLGDFL+EHPGEL+RT SP FVCTVLPPHWRSNKTLPVAFKVV
Sbjct: 77  LLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFKVV 136

Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
           +LGD+MDGT+VT+RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIT+
Sbjct: 137 SLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITV 196

Query: 179 SSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTT 225
           S++PP + TY+KAIKVTVDGPREPRSKTR+           P   +T
Sbjct: 197 STNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFST 243

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624236|gb|EHJ75094.1| hypothetical protein KGM_21075 [Danaus plexippus]

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 147/162 (90%)

Query: 59  LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVV 118
           LL++TY+KMTSDILAERTLGDFLSEHPGELVRTGSP FVCTVLPPHWRSNKTLPVAFKVV
Sbjct: 19  LLHETYTKMTSDILAERTLGDFLSEHPGELVRTGSPHFVCTVLPPHWRSNKTLPVAFKVV 78

Query: 119 ALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 178
           ALGDV DGT+VT+RAGNDEN CAELRN +AVMKNQVAKFNDLRFVGRSGRGKSFTLTITI
Sbjct: 79  ALGDVGDGTLVTVRAGNDENCCAELRNSSAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI 138

Query: 179 SSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSP 220
           S++PPQVTTY+KAIKVTVDGPREPRSKTR+           P
Sbjct: 139 STTPPQVTTYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRP 180

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195482120|ref|XP_002101920.1| GE15340 [Drosophila yakuba] gi|194189444|gb|EDX03028.1| GE15340 [Drosophila yakuba]

 Score =  290 bits (742), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 133/169 (78%), Positives = 148/169 (87%)

Query: 57  GNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFK 116
             LLN+ Y+KMTSDILAERTLGDFL+EHPGEL+RT SP FVCTVLPPHWRSNKTLPVAFK
Sbjct: 193 AQLLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRSNKTLPVAFK 252

Query: 117 VVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTI 176
           VV+LGD+MDGT+VT+RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTI
Sbjct: 253 VVSLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTI 312

Query: 177 TISSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTT 225
           T+S++PP + TY+KAIKVTVDGPREPRSKTR+           P   +T
Sbjct: 313 TVSTNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFST 361

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
FB|FBgn0083981	658	RunxA [Drosophila melanogaster	0.864	0.338	0.642	2.2e-73
FB|FBgn0259162	663	RunxB [Drosophila melanogaster	0.790	0.307	0.612	1.3e-59
ZFIN|ZDB-GENE-000605-1	451	runx1 "runt-related transcript	0.531	0.303	0.729	3e-53
UNIPROTKB|Q90813	408	Gga.45609 "Ch-runtB2" [Gallus	0.523	0.330	0.75	3.8e-53
UNIPROTKB|E1BAD4	453	RUNX1 "Uncharacterized protein	0.523	0.298	0.748	3.8e-53
MGI|MGI:99852	451	Runx1 "runt related transcript	0.546	0.312	0.715	8e-53
RGD|2283	450	Runx1 "runt-related transcript	0.546	0.313	0.715	8e-53
UNIPROTKB|Q63046	450	Runx1 "Runt-related transcript	0.546	0.313	0.715	8e-53
UNIPROTKB|H9KVB1	389	RUNX1 "Runt-related transcript	0.519	0.344	0.748	1e-52
UNIPROTKB|D4AA40	301	Runx1 "Runt-related transcript	0.546	0.468	0.715	1e-52

FB|FBgn0083981 RunxA [Drosophila melanogaster (taxid:7227)]

 Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
 Identities = 153/238 (64%), Positives = 176/238 (73%)

Query:     1 MHLTGTTNTNSPTEGNTGNLLNDTYSK--MTSDILAERTLGDFLSEHPGELVRTEGNTGN 58
             MHLT TT++NS T  N  N  N+T +    +S+     T G   +   G    + GN  N
Sbjct:    13 MHLT-TTSSNS-TASNANNNNNNTANNNNTSSNNNTTNTNGSSNNNTSGNNNNSSGNNSN 70

Query:    59 -----------LLNDTYSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRS 107
                        LLN+ Y+KMTSDILAERTLGDFL+EHPGEL+RT SP FVCTVLPPHWRS
Sbjct:    71 TEQNTPPTPAQLLNEAYTKMTSDILAERTLGDFLTEHPGELIRTSSPLFVCTVLPPHWRS 130

Query:   108 NKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSG 167
             NKTLPVAFKVV+LGD+MDGT+VT+RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSG
Sbjct:   131 NKTLPVAFKVVSLGDIMDGTMVTVRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSG 190

Query:   168 RGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKSFTLTITISSSPPQVTT 225
             RGKSFTLTIT+S++PP + TY+KAIKVTVDGPREPRSKTR+           P   +T
Sbjct:   191 RGKSFTLTITVSTNPPHIATYNKAIKVTVDGPREPRSKTRQQQQFHFAFGQRPFHFST 248

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

FB|FBgn0259162 RunxB [Drosophila melanogaster (taxid:7227)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 125/204 (61%), Positives = 142/204 (69%)

Query:     4 TGTTNTNSPTEGNTGNLLNDTYSKMTSDILAERTLGDFLSEHPGELVRTEGNTGNLLNDT 63
             T TT T       +    N+  +  TS      T  +  S           N      DT
Sbjct:    38 TATTTTTKRRNAESSASSNNNNNNNTSTTNNNNTNNNNNSTTNNNNNNNNNNVKTKPVDT 97

Query:    64 YSKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDV 123
                +T + L ERT+   L+EHPGELV+TGSP  VCT LP HWRSNKTLP+AFKV+ALG+V
Sbjct:    98 SPYLTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFKVLALGEV 157

Query:   124 MDGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPP 183
             MDGTIVTIRAGNDEN+C ELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTI IS++P 
Sbjct:   158 MDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTIVISTNPI 217

Query:   184 QVTTYSKAIKVTVDGPREPRSKTR 207
             Q+ TY+KAIKVTVDGPREPRSK R
Sbjct:   218 QIATYTKAIKVTVDGPREPRSKVR 241

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;IC;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

ZFIN|ZDB-GENE-000605-1 runx1 "runt-related transcription factor 1" [Danio rerio (taxid:7955)]

 Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
 Identities = 100/137 (72%), Positives = 120/137 (87%)

Query:    72 LAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTI 131
             +A+R++ + LS+HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGD+ DGT+VT+
Sbjct:    51 MADRSMVEVLSDHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDIPDGTLVTV 110

Query:   132 RAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKA 191
              AGNDENY AELRN TA +KNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +A
Sbjct:   111 MAGNDENYSAELRNATAAIKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYQRA 170

Query:   192 IKVTVDGPREPRSKTRK 208
             IK+TVDGPREPR   +K
Sbjct:   171 IKITVDGPREPRRHRQK 187

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IGI;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IPI

GO:0030099 "myeloid cell differentiation" evidence=IGI;IMP

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

UNIPROTKB|Q90813 Gga.45609 "Ch-runtB2" [Gallus gallus (taxid:9031)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 102/136 (75%), Positives = 121/136 (88%)

Query:    73 AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR 132
             A+R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ 
Sbjct:    60 ADRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVM 119

Query:   133 AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192
             AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AI
Sbjct:   120 AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAI 179

Query:   193 KVTVDGPREPRSKTRK 208
             K+TVDGPREPR+ TR+
Sbjct:   180 KITVDGPREPRN-TRQ 194

GO:0005524 "ATP binding" evidence=IEA

GO:0000975 "regulatory region DNA binding" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0002318 "myeloid progenitor cell differentiation" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0030853 "negative regulation of granulocyte differentiation" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0071336 "regulation of hair follicle cell proliferation" evidence=IEA

UNIPROTKB|E1BAD4 RUNX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 101/135 (74%), Positives = 118/135 (87%)

Query:    74 ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
             +R++ D L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct:    48 DRSMVDVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107

Query:   134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
             GNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct:   108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167

Query:   194 VTVDGPREPRSKTRK 208
             +TVDGPREPR   +K
Sbjct:   168 ITVDGPREPRRHRQK 182

GO:0071336 "regulation of hair follicle cell proliferation" evidence=IEA

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0048666 "neuron development" evidence=IEA

GO:0048266 "behavioral response to pain" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IEA

GO:0031069 "hair follicle morphogenesis" evidence=IEA

GO:0030854 "positive regulation of granulocyte differentiation" evidence=IEA

GO:0030853 "negative regulation of granulocyte differentiation" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0002318 "myeloid progenitor cell differentiation" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0000975 "regulatory region DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:99852 Runx1 "runt related transcription factor 1" [Mus musculus (taxid:10090)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 103/144 (71%), Positives = 122/144 (84%)

Query:    65 SKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVM 124
             SK+ S    +R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV 
Sbjct:    42 SKLRS---GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVP 98

Query:   125 DGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQ 184
             DGT+VT+ AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQ
Sbjct:    99 DGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQ 158

Query:   185 VTTYSKAIKVTVDGPREPRSKTRK 208
             V TY +AIK+TVDGPREPR   +K
Sbjct:   159 VATYHRAIKITVDGPREPRRHRQK 182

GO:0000975 "regulatory region DNA binding" evidence=ISO

GO:0001501 "skeletal system development" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001889 "liver development" evidence=IMP

GO:0002318 "myeloid progenitor cell differentiation" evidence=IMP

GO:0003677 "DNA binding" evidence=ISO;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;IDA

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0007417 "central nervous system development" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISO

GO:0009966 "regulation of signal transduction" evidence=IMP

GO:0030097 "hemopoiesis" evidence=ISO;TAS

GO:0030099 "myeloid cell differentiation" evidence=ISO

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030853 "negative regulation of granulocyte differentiation" evidence=ISO

GO:0030854 "positive regulation of granulocyte differentiation" evidence=ISO

GO:0031069 "hair follicle morphogenesis" evidence=IMP

GO:0032526 "response to retinoic acid" evidence=IDA

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0045766 "positive regulation of angiogenesis" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0048266 "behavioral response to pain" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0060216 "definitive hemopoiesis" evidence=IMP

GO:0070491 "repressing transcription factor binding" evidence=IPI

GO:0071336 "regulation of hair follicle cell proliferation" evidence=IMP

GO:2000872 "positive regulation of progesterone secretion" evidence=ISO

RGD|2283 Runx1 "runt-related transcription factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 103/144 (71%), Positives = 122/144 (84%)

Query:    65 SKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVM 124
             SK+ S    +R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV 
Sbjct:    42 SKLRS---GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVP 98

Query:   125 DGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQ 184
             DGT+VT+ AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQ
Sbjct:    99 DGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQ 158

Query:   185 VTTYSKAIKVTVDGPREPRSKTRK 208
             V TY +AIK+TVDGPREPR   +K
Sbjct:   159 VATYHRAIKITVDGPREPRRHRQK 182

GO:0000975 "regulatory region DNA binding" evidence=IEA;ISO

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0001889 "liver development" evidence=IEA;ISO

GO:0002318 "myeloid progenitor cell differentiation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO;TAS

GO:0007417 "central nervous system development" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0009966 "regulation of signal transduction" evidence=IEA;ISO

GO:0030097 "hemopoiesis" evidence=ISO

GO:0030099 "myeloid cell differentiation" evidence=IEA;ISO

GO:0030182 "neuron differentiation" evidence=ISO

GO:0030853 "negative regulation of granulocyte differentiation" evidence=IEA;ISO

GO:0030854 "positive regulation of granulocyte differentiation" evidence=ISO;ISS

GO:0031069 "hair follicle morphogenesis" evidence=IEA;ISO

GO:0032526 "response to retinoic acid" evidence=ISO

GO:0035162 "embryonic hemopoiesis" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045766 "positive regulation of angiogenesis" evidence=ISO;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0048266 "behavioral response to pain" evidence=IEA;ISO

GO:0048666 "neuron development" evidence=IEA;ISO

GO:0060216 "definitive hemopoiesis" evidence=IEA;ISO

GO:0070491 "repressing transcription factor binding" evidence=IEA;ISO

GO:0071336 "regulation of hair follicle cell proliferation" evidence=IEA;ISO

GO:2000872 "positive regulation of progesterone secretion" evidence=IMP

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q63046 Runx1 "Runt-related transcription factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 103/144 (71%), Positives = 122/144 (84%)

Query:    65 SKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVM 124
             SK+ S    +R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV 
Sbjct:    42 SKLRS---GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVP 98

Query:   125 DGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQ 184
             DGT+VT+ AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQ
Sbjct:    99 DGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQ 158

Query:   185 VTTYSKAIKVTVDGPREPRSKTRK 208
             V TY +AIK+TVDGPREPR   +K
Sbjct:   159 VATYHRAIKITVDGPREPRRHRQK 182

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H9KVB1 RUNX1 "Runt-related transcription factor 1" [Homo sapiens (taxid:9606)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 101/135 (74%), Positives = 120/135 (88%)

Query:    74 ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRA 133
             +R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ A
Sbjct:    48 DRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMA 107

Query:   134 GNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIK 193
             GNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK
Sbjct:   108 GNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIK 167

Query:   194 VTVDGPREPRSKTRK 208
             +TVDGPREPR+ TR+
Sbjct:   168 ITVDGPREPRN-TRQ 181

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|D4AA40 Runx1 "Runt-related transcription factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
 Identities = 103/144 (71%), Positives = 122/144 (84%)

Query:    65 SKMTSDILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVM 124
             SK+ S    +R++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV 
Sbjct:    42 SKLRS---GDRSMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVP 98

Query:   125 DGTIVTIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQ 184
             DGT+VT+ AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQ
Sbjct:    99 DGTLVTVLAGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQ 158

Query:   185 VTTYSKAIKVTVDGPREPRSKTRK 208
             V TY +AIK+TVDGPREPR   +K
Sbjct:   159 VATYHRAIKITVDGPREPRRHRQK 182

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q01196	RUNX1_HUMAN	No assigned EC number	0.7407	0.5232	0.2980	yes	N/A
Q03347	RUNX1_MOUSE	No assigned EC number	0.7407	0.5232	0.2993	yes	N/A
Q63046	RUNX1_RAT	No assigned EC number	0.7407	0.5232	0.3	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	258
pfam00853	134	pfam00853, Runt, Runt domain	8e-91

>gnl|CDD|109891 pfam00853, Runt, Runt domain

 Score =  263 bits (675), Expect = 8e-91
 Identities = 111/134 (82%), Positives = 125/134 (93%)

Query: 75  RTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAG 134
           R++ + L+EHPGELV+TGSP F+C+VLP HWRSNKTLPVAFKVVALG+V DGT+VTIRAG
Sbjct: 1   RSVVEVLAEHPGELVKTGSPNFLCSVLPSHWRSNKTLPVAFKVVALGEVPDGTMVTIRAG 60

Query: 135 NDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKV 194
           NDENYCAELRN TAVMKNQVAKFNDLRFVGRSGRGKSFTLTITI+++PPQV TY+KAIKV
Sbjct: 61  NDENYCAELRNATAVMKNQVAKFNDLRFVGRSGRGKSFTLTITIATNPPQVATYNKAIKV 120

Query: 195 TVDGPREPRSKTRK 208
           TVDGPREPR K +K
Sbjct: 121 TVDGPREPRRKKQK 134

Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PF00853	135	Runt: Runt domain; InterPro: IPR013524 The AML1 ge	100.0
KOG3982|consensus	475		100.0
PF00853	135	Runt: Runt domain; InterPro: IPR013524 The AML1 ge	99.83
KOG3982|consensus	475		99.71

>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []

Probab=100.00  E-value=3e-87  Score=553.88  Aligned_cols=135  Identities=81%  Similarity=1.270  Sum_probs=116.9

Q ss_pred             hhhhhhhhhcCCCceeecCCCceEeecCCCccccCCCCCcceEEEEeeecCCCeEEEEeccCCCccceeccchhhhhccc
Q psy9229          74 ERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQ  153 (258)
Q Consensus        74 e~~~~~~l~~~~~elv~T~sP~~lcs~LP~HWR~NKtLP~~FkVvalg~v~DGt~Vtv~AGNdEn~~aeLRN~~a~mknq  153 (258)
                      ||+|.|+|+|||||||+||||||+||+||+||||||+||++|||||||||||||+|||||||||||||||||++|+||||
T Consensus         1 er~~~~~l~~~~~~lv~T~sP~~lcs~LP~HWR~NKsLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aElRN~tavmknq   80 (135)
T PF00853_consen    1 ERTLHEALAEHPGELVRTDSPNFLCSVLPSHWRSNKSLPVAFKVVALGDVPDGTLVTVMAGNDENYCAELRNATAVMKNQ   80 (135)
T ss_dssp             ---HHHHHHHSTCCEEECSSTTEEEES-TSEEETTSS-SS-EEEEESSS-STTEEEEEEEEESSCSSBBEES-EEEEETT
T ss_pred             CccHHHHHHhCCcccccCCCCCEEeecccccccccCCCCCceeEEEEEEcCCCcEEEEEecCCchhhhhhhchhhhhhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCCCCCCc
Q psy9229         154 VAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRK  208 (258)
Q Consensus       154 vA~FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepRs~r~K  208 (258)
                      |||||||||||||||||||+|||+|+|+|||||||++|||||||||||||++++|
T Consensus        81 vA~FnDLRFvGRSGRGKsFtltItv~t~PpqvAty~~AIKVTVDGPRePR~~~~~  135 (135)
T PF00853_consen   81 VARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRSKRQK  135 (135)
T ss_dssp             EEEESS-EECST-TTTSEEEEEEEE-SSS-EEEEECCEEEEESS-SSCCG-----
T ss_pred             cccccccccccccCCccceEEEEEEeCCCchHHhheeeEEEEecCCCCCccccCC
Confidence            9999999999999999999999999999999999999999999999999999876

The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....

>KOG3982|consensus

Probab=100.00  E-value=2.8e-81  Score=589.01  Aligned_cols=140  Identities=82%  Similarity=1.243  Sum_probs=135.9

Q ss_pred             hhhhhhhhhhhhhcCCCceeecCCCceEeecCCCccccCCCCCcceEEEEeeecCCCeEEEEeccCCCccceeccchhhh
Q psy9229          70 DILAERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAV  149 (258)
Q Consensus        70 ~~~~e~~~~~~l~~~~~elv~T~sP~~lcs~LP~HWR~NKtLP~~FkVvalg~v~DGt~Vtv~AGNdEn~~aeLRN~~a~  149 (258)
                      +.+.+|+|+|+|+|||||||+||||||||++||+|||||||||+||||||||||||||+||||||||||||+|||||+|+
T Consensus        94 mt~~~rt~~~~laehpgeLvrT~SPn~lcs~LP~HWRsNKtlp~aFkVvaLgdVpDgT~Vti~aGNDEnyc~ElRN~tA~  173 (475)
T KOG3982|consen   94 MTLVFRTVVEFLAEHPGELVRTSSPNFLCSVLPTHWRSNKTLPVAFKVVALGDVPDGTLVTIMAGNDENYCAELRNCTAV  173 (475)
T ss_pred             hhhhHHHHHHHHHhCccceeecCCCceeeecCcchhccCCcccceeEEEEecccCCCcEEEEEecCCcchhHHhhhhHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccceeecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCC-CCCCcc
Q psy9229         150 MKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPR-SKTRKS  209 (258)
Q Consensus       150 mknqvA~FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepR-s~r~KS  209 (258)
                      |||||||||||||||||||||+|||||+|+|+|||||||+|||||||||||||| +|-+++
T Consensus       174 mknQVAkFNDLRFVGRSGRGKsFtLTIti~TnP~qvATy~kaIKVTVDGPRepRr~K~~~~  234 (475)
T KOG3982|consen  174 MKNQVAKFNDLRFVGRSGRGKSFTLTITIFTNPPQVATYHKAIKVTVDGPREPRRSKLSDQ  234 (475)
T ss_pred             HHhhhhhhccceeecccCCCcceEEEEEEecCCcceeeeeceEEEeccCCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999 555555

>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []

Probab=99.83  E-value=5.9e-21  Score=159.23  Aligned_cols=108  Identities=39%  Similarity=0.494  Sum_probs=85.5

Q ss_pred             EEeccCCCccceeccchhhhhcccceeecceeeeecCCCCCcceEE------------EEEecCCCeeeeeeeeEEEeee
Q psy9229         130 TIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLT------------ITISSSPPQVTTYSKAIKVTVD  197 (258)
Q Consensus       130 tv~AGNdEn~~aeLRN~~a~mknqvA~FnDLRFvGRSGRGKsftlt------------Itv~t~PPqvAt~~~AIKVtvD  197 (258)
                      .|..|+..-.|.-|..+|...|...+.|.- -.+|.-..|...||.            .....+..|+|.|++..+|   
T Consensus        15 lv~T~sP~~lcs~LP~HWR~NKsLP~~FkV-valg~V~DGT~Vtv~AGNDEn~~aElRN~tavmknqvA~FnDLRFv---   90 (135)
T PF00853_consen   15 LVRTDSPNFLCSVLPSHWRSNKSLPVAFKV-VALGDVPDGTLVTVMAGNDENYCAELRNATAVMKNQVARFNDLRFV---   90 (135)
T ss_dssp             EEECSSTTEEEES-TSEEETTSS-SS-EEE-EESSS-STTEEEEEEEEESSCSSBBEES-EEEEETTEEEESS-EEC---
T ss_pred             cccCCCCCEEeecccccccccCCCCCceeE-EEEEEcCCCcEEEEEecCCchhhhhhhchhhhhhcccccccccccc---
Confidence            468899999999999999999999999975 566889999887776            3444556899999999999   


Q ss_pred             CCCCCCCCCCcceeeEEEeecCCCceeeeccceeeeeeCCCCCCCCCc
Q psy9229         198 GPREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTI  245 (258)
Q Consensus       198 GPRepRs~r~KSf~lTItisTSPPqvat~~~AIKVtVDGPRePR~k~~  245 (258)
                          +||||||||+++|++.|+||||+||++|||||||||||||++..
T Consensus        91 ----GRSGRGKsFtltItv~t~PpqvAty~~AIKVTVDGPRePR~~~~  134 (135)
T PF00853_consen   91 ----GRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRSKRQ  134 (135)
T ss_dssp             ----ST-TTTSEEEEEEEE-SSS-EEEEECCEEEEESS-SSCCG----
T ss_pred             ----cccCCccceEEEEEEeCCCchHHhheeeEEEEecCCCCCccccC
Confidence                99999999999999999999999999999999999999999864

The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....

>KOG3982|consensus

Probab=99.71  E-value=6.4e-18  Score=160.97  Aligned_cols=109  Identities=40%  Similarity=0.478  Sum_probs=96.6

Q ss_pred             EEeccCCCccceeccchhhhhcccceeecceeeeecCCCCCcceEE------------EEEecCCCeeeeeeeeEEEeee
Q psy9229         130 TIRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLT------------ITISSSPPQVTTYSKAIKVTVD  197 (258)
Q Consensus       130 tv~AGNdEn~~aeLRN~~a~mknqvA~FnDLRFvGRSGRGKsftlt------------Itv~t~PPqvAt~~~AIKVtvD  197 (258)
                      .|+.+...-.|..|.++|...|..-..|+. ..+|..=.|.-.++.            .+-.....|||.|++..+|   
T Consensus       112 LvrT~SPn~lcs~LP~HWRsNKtlp~aFkV-vaLgdVpDgT~Vti~aGNDEnyc~ElRN~tA~mknQVAkFNDLRFV---  187 (475)
T KOG3982|consen  112 LVRTSSPNFLCSVLPTHWRSNKTLPVAFKV-VALGDVPDGTLVTIMAGNDENYCAELRNCTAVMKNQVAKFNDLRFV---  187 (475)
T ss_pred             eeecCCCceeeecCcchhccCCcccceeEE-EEecccCCCcEEEEEecCCcchhHHhhhhHHHHHhhhhhhccceee---
Confidence            468899999999999999999999999997 577877788777665            3444556899999999999   


Q ss_pred             CCCCCCCCCCcceeeEEEeecCCCceeeeccceeeeeeCCCCCC-CCCcc
Q psy9229         198 GPREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPR-SKTIL  246 (258)
Q Consensus       198 GPRepRs~r~KSf~lTItisTSPPqvat~~~AIKVtVDGPRePR-~k~~~  246 (258)
                          +||||||+|+|+|+|.|.|+||+||++||||||||||||| +|..-
T Consensus       188 ----GRSGRGKsFtLTIti~TnP~qvATy~kaIKVTVDGPRepRr~K~~~  233 (475)
T KOG3982|consen  188 ----GRSGRGKSFTLTITIFTNPPQVATYHKAIKVTVDGPREPRRSKLSD  233 (475)
T ss_pred             ----cccCCCcceEEEEEEecCCcceeeeeceEEEeccCCCccccccccc
Confidence                9999999999999999999999999999999999999999 55543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
1ean_A	140	The Runx1 Runt Domain At 1.25a Resolution: A Struct		1e-57
2j6w_A	140	R164n Mutant Of The Runx1 Runt Domain Length = 140		2e-57
1cmo_A	127	Immunoglobulin Motif Dna-Recognition And Heterodime		3e-57
1h9d_A	134	Aml1CBF-BetaDNA COMPLEX Length = 134		4e-57
1ljm_A	131	Dna Recognition Is Mediated By Conformational Trans		1e-56
1eaq_A	140	The Runx1 Runt Domain At 1.25a Resolution: A Struct		2e-56
1io4_C	123	Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN		4e-54
1co1_A	115	Fold Of The Cbfa Length = 115		9e-52

>pdb|1EAN|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural Switch And Specifically Bound Chloride Ions Modulate Dna Binding Length = 140

Iteration: 1
 Score =  219 bits (559), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 100/136 (73%), Positives = 118/136 (86%)
Query: 73  AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR 132
            +R++ + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 2   GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 133 AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192
           AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AI
Sbjct: 62  AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAI 121
Query: 193 KVTVDGPREPRSKTRK 208
           K+TVDGPREPR   +K
Sbjct: 122 KITVDGPREPRRHRQK 137

>pdb|2J6W|A Chain A, R164n Mutant Of The Runx1 Runt Domain Length = 140

Iteration: 1
 Score =  218 bits (556), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 100/136 (73%), Positives = 117/136 (86%)
Query: 73  AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR 132
            +R++ + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 2   GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61
Query: 133 AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192
           AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY  AI
Sbjct: 62  AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHNAI 121
Query: 193 KVTVDGPREPRSKTRK 208
           K+TVDGPREPR   +K
Sbjct: 122 KITVDGPREPRRHRQK 137

>pdb|1CMO|A Chain A, Immunoglobulin Motif Dna-Recognition And Heterodimerization For The Pebp2CBF RUNT-Domain Length = 127

Iteration: 1
 Score =  218 bits (555), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 99/125 (79%), Positives = 113/125 (90%)
Query: 79  DFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDEN 138
           + L++HPGELVRT SP F+C+VLP HWRSNKTLP+AFKVVALGDV DGT+VT+ AGNDEN
Sbjct: 2   EVLADHPGELVRTDSPNFLCSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 61
Query: 139 YCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198
           Y AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+TVDG
Sbjct: 62  YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 121
Query: 199 PREPR 203
           PREPR
Sbjct: 122 PREPR 126

>pdb|1H9D|A Chain A, Aml1CBF-BetaDNA COMPLEX Length = 134

Iteration: 1
 Score =  217 bits (553), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 99/133 (74%), Positives = 116/133 (87%)
Query: 76  TLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 135
           ++ + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ AGN
Sbjct: 1   SMVEVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGN 60
Query: 136 DENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVT 195
           DENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+T
Sbjct: 61  DENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKIT 120
Query: 196 VDGPREPRSKTRK 208
           VDGPREPR   +K
Sbjct: 121 VDGPREPRRHRQK 133

>pdb|1LJM|A Chain A, Dna Recognition Is Mediated By Conformational Transition And By Dna Bending Length = 131

Iteration: 1
 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 98/125 (78%), Positives = 112/125 (89%)
Query: 79  DFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDEN 138
           + L++HPGELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ AGNDEN
Sbjct: 3   EVLADHPGELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDEN 62
Query: 139 YCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDG 198
           Y AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+TVDG
Sbjct: 63  YSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDG 122
Query: 199 PREPR 203
           PREPR
Sbjct: 123 PREPR 127

>pdb|1EAQ|A Chain A, The Runx1 Runt Domain At 1.25a Resolution: A Structural Switch And Specifically Bound Chloride Ions Modulate Dna Binding Length = 140

Iteration: 1
 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 116/136 (85%)
Query: 73  AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR 132
            +R+  + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 2   GDRSXVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVX 61
Query: 133 AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192
           AGNDENY AELRN TA  KNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AI
Sbjct: 62  AGNDENYSAELRNATAAXKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAI 121
Query: 193 KVTVDGPREPRSKTRK 208
           K+TVDGPREPR   +K
Sbjct: 122 KITVDGPREPRRHRQK 137

>pdb|1IO4|C Chain C, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN- Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP Homodimer Bound To A Dna Fragment From The Csf-1r Promoter Length = 123

Iteration: 1
 Score =  207 bits (528), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 96/123 (78%), Positives = 108/123 (87%)
Query: 86  GELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRN 145
           GELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY AELRN
Sbjct: 1   GELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRN 60
Query: 146 CTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSK 205
            TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+TVDGPREPR  
Sbjct: 61  ATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRH 120
Query: 206 TRK 208
            +K
Sbjct: 121 RQK 123

>pdb|1CO1|A Chain A, Fold Of The Cbfa Length = 115

Iteration: 1
 Score =  199 bits (507), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 103/115 (89%)
Query: 87  ELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNC 146
           ELVRT SP F+C+VLP HWR NKTLP+AFKVVALGDV DGT+VT+ AGNDENY AELRN 
Sbjct: 1   ELVRTDSPNFLCSVLPTHWRCNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNA 60
Query: 147 TAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPRE 201
           TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+TVDGPRE
Sbjct: 61  TAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPRE 115
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
1eaq_A	140	RUNT-related transcription factor 1; transcription	5e-73

>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A Length = 140

 Score =  218 bits (557), Expect = 5e-73
 Identities = 100/136 (73%), Positives = 118/136 (86%)

Query: 73  AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIR 132
            +R++ + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+ 
Sbjct: 2   GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVM 61

Query: 133 AGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAI 192
           AGNDENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AI
Sbjct: 62  AGNDENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAI 121

Query: 193 KVTVDGPREPRSKTRK 208
           K+TVDGPREPR   +K
Sbjct: 122 KITVDGPREPRRHRQK 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
1eaq_A	140	RUNT-related transcription factor 1; transcription	100.0
1eaq_A	140	RUNT-related transcription factor 1; transcription	99.81

>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A

Probab=100.00  E-value=5.8e-86  Score=546.84  Aligned_cols=137  Identities=73%  Similarity=1.164  Sum_probs=123.9

Q ss_pred             hhhhhhhhhhcCCCceeecCCCceEeecCCCccccCCCCCcceEEEEeeecCCCeEEEEeccCCCccceeccchhhhhcc
Q psy9229          73 AERTLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKN  152 (258)
Q Consensus        73 ~e~~~~~~l~~~~~elv~T~sP~~lcs~LP~HWR~NKtLP~~FkVvalg~v~DGt~Vtv~AGNdEn~~aeLRN~~a~mkn  152 (258)
                      +||++.|+|+|||||||+||||||+||+||+||||||+||++|||||||+|||||+|||+|||||||||||||++|+|||
T Consensus         2 ~er~~~e~l~~~~gelv~T~sP~~~cs~LP~HWRsNKtLP~~FkVvalg~V~DGT~Vtv~AGNDEn~~aelrN~~a~mkn   81 (140)
T 1eaq_A            2 GDRSMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKN   81 (140)
T ss_dssp             ---CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEET
T ss_pred             cchhHHHHHhhCCCceEecCCCCEEEccCcchhccCCCCCCceEEEEecccCCCCEEEEEecCCcchhHHHHhHHHHHhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCCCCCCCCCCcc
Q psy9229         153 QVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTRKS  209 (258)
Q Consensus       153 qvA~FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGPRepRs~r~KS  209 (258)
                      ||||||||||||||||||||+|||+|+|+|||||||++|||||||||||||++|+|.
T Consensus        82 qvA~FnDLRFvgRSGRGKsFtlTItv~t~PpqvAty~~AIKVTVDGPRePR~~rqk~  138 (140)
T 1eaq_A           82 QVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQKL  138 (140)
T ss_dssp             TEEECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC----------
T ss_pred             ccceeecccccccCCCCccEEEEEEEecCCcchhhheeeEEEEecCCCCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999984

>1eaq_A RUNT-related transcription factor 1; transcription/DNA, acute myeloid leukemia, AML, RUNX1, RUNT domain, chloride binding, IG fold; HET: MSE; 1.25A {Mus musculus} SCOP: b.2.5.6 PDB: 1ean_A 1eao_A* 2j6w_A 1e50_A 1h9d_A* 1ljm_A 1cmo_A 1hjc_A* 1hjb_C* 1io4_C 1co1_A

Probab=99.81  E-value=1.1e-20  Score=156.96  Aligned_cols=107  Identities=36%  Similarity=0.464  Sum_probs=89.6

Q ss_pred             EeccCCCccceeccchhhhhcccceeecceeeeecCCCCCcceEE------------EEEecCCCeeeeeeeeEEEeeeC
Q psy9229         131 IRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLT------------ITISSSPPQVTTYSKAIKVTVDG  198 (258)
Q Consensus       131 v~AGNdEn~~aeLRN~~a~mknqvA~FnDLRFvGRSGRGKsftlt------------Itv~t~PPqvAt~~~AIKVtvDG  198 (258)
                      |..|+..-.|.-|..+|...|...+-|.-. .+|.-..|...|+.            ........|+|.|++..+|    
T Consensus        18 v~T~sP~~~cs~LP~HWRsNKtLP~~FkVv-alg~V~DGT~Vtv~AGNDEn~~aelrN~~a~mknqvA~FnDLRFv----   92 (140)
T 1eaq_A           18 VRTDSPNFLSSVLPTHWRSNKTLPIAFKVV-ALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFV----   92 (140)
T ss_dssp             EECSSTTEEECCCCSEEETTCCCSSCCEEE-ESSCCCTTCEEEEEEEETTEEEECEESCEEEEETTEEECSSCEEC----
T ss_pred             EecCCCCEEEccCcchhccCCCCCCceEEE-EecccCCCCEEEEEecCCcchhHHHHhHHHHHhhccceeeccccc----
Confidence            678999999999999999999999999984 55888999888877            2233445799999999999    


Q ss_pred             CCCCCCCCCcceeeEEEeecCCCceeeeccceeeeeeCCCCCCCCCc
Q psy9229         199 PREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGPREPRSKTI  245 (258)
Q Consensus       199 PRepRs~r~KSf~lTItisTSPPqvat~~~AIKVtVDGPRePR~k~~  245 (258)
                         +||||||||+++|++.++||||+||.+|||||||||||||++..
T Consensus        93 ---gRSGRGKsFtlTItv~t~PpqvAty~~AIKVTVDGPRePR~~rq  136 (140)
T 1eaq_A           93 ---GRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGPREPRRHRQ  136 (140)
T ss_dssp             ---SCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC--------
T ss_pred             ---ccCCCCccEEEEEEEecCCcchhhheeeEEEEecCCCCCccccc
Confidence               99999999999999999999999999999999999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1eaqa_	124	b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML	2e-83

>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: RUNT domain
domain: Acute myeloid leukemia 1 protein (AML1), RUNT domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  243 bits (621), Expect = 2e-83
 Identities = 94/124 (75%), Positives = 110/124 (88%)

Query: 76  TLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGN 135
           ++ + L++HPGELVRT SP F+ +VLP HWRSNKTLP+AFKVVALGDV DGT+VT+ AGN
Sbjct: 1   SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGN 60

Query: 136 DENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVT 195
           DENY AELRN TA MKNQVA+FNDLRFVGRSGRGKSFTLTIT+ ++PPQV TY +AIK+T
Sbjct: 61  DENYSAELRNATAAMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKIT 120

Query: 196 VDGP 199
           VDGP
Sbjct: 121 VDGP 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1eaqa_	124	Acute myeloid leukemia 1 protein (AML1), RUNT doma	100.0
d1eaqa_	124	Acute myeloid leukemia 1 protein (AML1), RUNT doma	99.71

>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: RUNT domain
domain: Acute myeloid leukemia 1 protein (AML1), RUNT domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-80  Score=503.98  Aligned_cols=124  Identities=76%  Similarity=1.201  Sum_probs=122.9

Q ss_pred             hhhhhhhcCCCceeecCCCceEeecCCCccccCCCCCcceEEEEeeecCCCeEEEEeccCCCccceeccchhhhhcccce
Q psy9229          76 TLGDFLSEHPGELVRTGSPQFVCTVLPPHWRSNKTLPVAFKVVALGDVMDGTIVTIRAGNDENYCAELRNCTAVMKNQVA  155 (258)
Q Consensus        76 ~~~~~l~~~~~elv~T~sP~~lcs~LP~HWR~NKtLP~~FkVvalg~v~DGt~Vtv~AGNdEn~~aeLRN~~a~mknqvA  155 (258)
                      +|.|+|+|||||||+|+||+|+|++||+|||||||||++||||+||||||||+|||+|||||||||||||++|+||||||
T Consensus         1 ~l~~~l~e~pgelv~t~sP~~lCs~LP~HWRsNKtLp~~Fkvv~L~~v~dGt~vti~agNden~~aelrn~ta~mknqva   80 (124)
T d1eaqa_           1 SMVEVLADHPGELVRTDSPNFLSSVLPTHWRSNKTLPIAFKVVALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVA   80 (124)
T ss_dssp             CHHHHHHHSTTTCEECSSTTEEECCCCSEEETTCCCSSCCEEEESSCCCTTCEEEEEEEETTEEEECEESCEEEEETTEE
T ss_pred             CHhHHHHhCCCccccCCCCCEEeecCcchhccCCccCcceEEEEeeecCCCcEEEEEecCCcccchhhhhhHHHHhhccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceeeeecCCCCCcceEEEEEecCCCeeeeeeeeEEEeeeCC
Q psy9229         156 KFNDLRFVGRSGRGKSFTLTITISSSPPQVTTYSKAIKVTVDGP  199 (258)
Q Consensus       156 ~FnDLRFvGRSGRGKsftltItv~t~PPqvAt~~~AIKVtvDGP  199 (258)
                      |||||||||||||||||+|||+|+|+|||||+|+||||||||||
T Consensus        81 ~fndLrFvgRSgrgKsFtLTItv~t~PpqVAty~rAIKVTVDGP  124 (124)
T d1eaqa_          81 RFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGP  124 (124)
T ss_dssp             ECSSCEECSCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC
T ss_pred             cccceEEeccCCCCceEEEEEEEecCCchheeheeeEEEeccCC
Confidence            99999999999999999999999999999999999999999998

>d1eaqa_ b.2.5.6 (A:) Acute myeloid leukemia 1 protein (AML1), RUNT domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: RUNT domain
domain: Acute myeloid leukemia 1 protein (AML1), RUNT domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.4e-18  Score=138.71  Aligned_cols=99  Identities=34%  Similarity=0.425  Sum_probs=91.1

Q ss_pred             EeccCCCccceeccchhhhhcccceeecceeeeecCCCCCcceEE------------EEEecCCCeeeeeeeeEEEeeeC
Q psy9229         131 IRAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSFTLT------------ITISSSPPQVTTYSKAIKVTVDG  198 (258)
Q Consensus       131 v~AGNdEn~~aeLRN~~a~mknqvA~FnDLRFvGRSGRGKsftlt------------Itv~t~PPqvAt~~~AIKVtvDG  198 (258)
                      ++.|+..-.|..|..+|...|....-|.- -++|--..|...+|.            ++...+..|+|.|++.++|    
T Consensus        14 v~t~sP~~lCs~LP~HWRsNKtLp~~Fkv-v~L~~v~dGt~vti~agNden~~aelrn~ta~mknqva~fndLrFv----   88 (124)
T d1eaqa_          14 VRTDSPNFLSSVLPTHWRSNKTLPIAFKV-VALGDVPDGTLVTVMAGNDENYSAELRNATAAMKNQVARFNDLRFV----   88 (124)
T ss_dssp             EECSSTTEEECCCCSEEETTCCCSSCCEE-EESSCCCTTCEEEEEEEETTEEEECEESCEEEEETTEEECSSCEEC----
T ss_pred             ccCCCCCEEeecCcchhccCCccCcceEE-EEeeecCCCcEEEEEecCCcccchhhhhhHHHHhhccccccceEEe----
Confidence            67899999999999999999999999998 688989999888776            4555667899999999999    


Q ss_pred             CCCCCCCCCcceeeEEEeecCCCceeeeccceeeeeeCC
Q psy9229         199 PREPRSKTRKSFTLTITISSSPPQVTTYSKAIKVTVDGP  237 (258)
Q Consensus       199 PRepRs~r~KSf~lTItisTSPPqvat~~~AIKVtVDGP  237 (258)
                         +||||+|||+++|+++++||||++|+||||||||||
T Consensus        89 ---gRSgrgKsFtLTItv~t~PpqVAty~rAIKVTVDGP  124 (124)
T d1eaqa_          89 ---GRSGRGKSFTLTITVFTNPPQVATYHRAIKITVDGP  124 (124)
T ss_dssp             ---SCCCTTCCBEEEEEECSSSCEEEECSSCBEEESSCC
T ss_pred             ---ccCCCCceEEEEEEEecCCchheeheeeEEEeccCC
Confidence               899999999999999999999999999999999998