Psyllid ID: psy9244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEcccccccccHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEccccccHHHHHHHHHHHcccEEEEHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHcccEEEEcccccHHHHHHHHHHHHH
Coil and Loop (DISEMBL)
maplayplpkeshestgvnaillgppgsgkgtqaplfAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLIsnnldkpecqngflldgfprtvpQAEKVYSLMMK
Flexible Loop (DISEMBL)
maplayplpkeshesTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQngflldgfprtvPQAEKVYSLMMK
Low Complexity Region (SEG)
MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK
Disordered region (IsUnstruct)
*********************************APLFAKKYCVCHLSTGDMLR*******************GKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTV************
Disordered Region (DISOPRED)
*******************AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM*
Disordered Region (DISEMBL)
MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK
Disordered Region (DISPRO)
***************TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q290A8	240	Adenylate kinase 2, mitoc	yes	N/A	1.0	0.495	0.75	6e-47
B4QBH8	240	Adenylate kinase 2, mitoc	N/A	N/A	1.0	0.495	0.733	1e-45
B4I2A8	240	Adenylate kinase 2, mitoc	N/A	N/A	1.0	0.495	0.733	1e-45
Q7QJX9	240	Adenylate kinase 2, mitoc	yes	N/A	1.0	0.495	0.741	1e-45
B3NQ53	240	Adenylate kinase 2, mitoc	N/A	N/A	1.0	0.495	0.725	2e-45
B3MCQ5	240	Adenylate kinase 2, mitoc	N/A	N/A	1.0	0.495	0.725	2e-45
Q9U915	240	Adenylate kinase 2, mitoc	yes	N/A	1.0	0.495	0.725	3e-45
B4PAR6	240	Adenylate kinase 2, mitoc	N/A	N/A	1.0	0.495	0.725	3e-45
B4MQT3	240	Adenylate kinase 2, mitoc	N/A	N/A	1.0	0.495	0.708	1e-44
B4J672	238	Adenylate kinase 2, mitoc	N/A	N/A	1.0	0.5	0.716	1e-44

>sp|Q290A8|KAD2_DROPS Adenylate kinase 2, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=Adk2 PE=3 SV=2

 Score =  185 bits (470), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 104/120 (86%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP LA P+ +   ++ G+NAILLGPPGSGKGTQAPL  +KYCVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNLAVPVERYEPQTIGINAILLGPPGSGKGTQAPLLKEKYCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ SL+ K
Sbjct: 61  SKLGTELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDSLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 3

>sp|B4QBH8|KAD2_DROSI Adenylate kinase 2, mitochondrial OS=Drosophila simulans GN=Adk2 PE=3 SV=1

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   E+ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila simulans (taxid: 7240)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4I2A8|KAD2_DROSE Adenylate kinase 2, mitochondrial OS=Drosophila sechellia GN=Adk2-1 PE=3 SV=1

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   E+ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila sechellia (taxid: 7238)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q7QJX9|KAD2_ANOGA Adenylate kinase 2, mitochondrial OS=Anopheles gambiae GN=Adk2 PE=3 SV=2

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAPLAYPLP-KESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP A  L  K + +STG+NAILLGPPGSGKGTQAPL  +KYCVCHLSTGDMLRAE++SG
Sbjct: 1   MAPNAAELKVKPASDSTGINAILLGPPGSGKGTQAPLLKEKYCVCHLSTGDMLRAEIASG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MD GKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAQLKKVMDEGKLVSDELVVDMIDSNLDKPECRNGFLLDGFPRTVVQAEKLDNLLEK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Anopheles gambiae (taxid: 7165)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B3NQ53|KAD2_DROER Adenylate kinase 2, mitochondrial OS=Drosophila erecta GN=Adk2 PE=3 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   ++ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPQTLGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila erecta (taxid: 7220)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B3MCQ5|KAD2_DROAN Adenylate kinase 2, mitochondrial OS=Drosophila ananassae GN=Adk2 PE=3 SV=1

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 102/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAPLA-YPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP A  P+ +   E  G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPTAAVPVERYEPERIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSD+LVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila ananassae (taxid: 7217)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|Q9U915|KAD2_DROME Adenylate kinase 2, mitochondrial OS=Drosophila melanogaster GN=Adk2 PE=1 SV=1

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   E+ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSD+LVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4PAR6|KAD2_DROYA Adenylate kinase 2, mitochondrial OS=Drosophila yakuba GN=Adk2 PE=3 SV=1

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   ++ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPQNIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila yakuba (taxid: 7245)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4MQT3|KAD2_DROWI Adenylate kinase 2, mitochondrial OS=Drosophila willistoni GN=Adk2 PE=3 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 102/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAPLA-YPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP A  P+ +   E+ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPTAAVPVERYESENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MD GKLVSDELVV++I +NLDKPEC+NGFLLDGFPRTV QA+K+ +L+ K
Sbjct: 61  SKLGAELKKVMDEGKLVSDELVVNMIDSNLDKPECKNGFLLDGFPRTVVQAQKLDTLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila willistoni (taxid: 7260)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

>sp|B4J672|KAD2_DROGR Adenylate kinase 2, mitochondrial OS=Drosophila grimshawi GN=Adk2 PE=3 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 101/120 (84%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +    + GVNAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE++SG
Sbjct: 1   MAPNAARPVERYESNNHGVNAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEIASG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG  LK+ MDAGKLVSD+LVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGSDLKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. This small ubiquitous enzyme involved in energy metabolism and nucleotide synthesis that is essential for maintenance and cell growth.

Drosophila grimshawi (taxid: 7222)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
198458025	240	GA16231 [Drosophila pseudoobscura pseudo	1.0	0.495	0.75	2e-45
242025536	238	adenylate kinase isoenzyme 2, putative [	0.941	0.470	0.741	4e-44
195341784	240	GM18289 [Drosophila sechellia] gi|195347	1.0	0.495	0.733	4e-44
58377938	240	AGAP007722-PA [Anopheles gambiae str. PE	1.0	0.495	0.741	4e-44
260827397	241	hypothetical protein BRAFLDRAFT_115743 [	0.983	0.485	0.717	5e-44
194885988	240	GG22922 [Drosophila erecta] gi|224493073	1.0	0.495	0.725	7e-44
194754367	240	GF12891 [Drosophila ananassae] gi|224493	1.0	0.495	0.725	1e-43
22026816	240	adenylate kinase-2 [Drosophila melanogas	1.0	0.495	0.725	1e-43
195489453	240	GE14359 [Drosophila yakuba] gi|224493087	1.0	0.495	0.725	1e-43
156538681	249	PREDICTED: adenylate kinase 2, mitochond	1.0	0.477	0.702	3e-43

>gi|198458025|ref|XP_001360879.2| GA16231 [Drosophila pseudoobscura pseudoobscura] gi|224493079|sp|Q290A8.2|KAD2_DROPS RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2 gi|198136195|gb|EAL25454.2| GA16231 [Drosophila pseudoobscura pseudoobscura]

 Score =  185 bits (470), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/120 (75%), Positives = 104/120 (86%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP LA P+ +   ++ G+NAILLGPPGSGKGTQAPL  +KYCVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNLAVPVERYEPQTIGINAILLGPPGSGKGTQAPLLKEKYCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ SL+ K
Sbjct: 61  SKLGTELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDSLLDK 120

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242025536|ref|XP_002433180.1| adenylate kinase isoenzyme 2, putative [Pediculus humanus corporis] gi|212518721|gb|EEB20442.1| adenylate kinase isoenzyme 2, putative [Pediculus humanus corporis]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 101/112 (90%)

Query: 8   LPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLK 67
           +P E  ++ G+NAILLGPPGSGKGTQAPL  KK+CVCHLSTGDMLRAE+++GS+LGK+LK
Sbjct: 3   VPMERGQTNGINAILLGPPGSGKGTQAPLLVKKFCVCHLSTGDMLRAEIATGSSLGKELK 62

Query: 68  ETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           +TMD GKLVSDELVV+LI  N+DKPEC+NG+LLDGFPRTVPQAEK+ +L+ K
Sbjct: 63  KTMDEGKLVSDELVVELIDTNMDKPECKNGWLLDGFPRTVPQAEKLDALLEK 114

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195341784|ref|XP_002037485.1| GM18289 [Drosophila sechellia] gi|195347331|ref|XP_002040207.1| GM16084 [Drosophila sechellia] gi|195586291|ref|XP_002082911.1| GD11825 [Drosophila simulans] gi|224493083|sp|B4I2A8.1|KAD2_DROSE RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2 gi|224493084|sp|B4QBH8.1|KAD2_DROSI RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2 gi|194132335|gb|EDW53903.1| GM18289 [Drosophila sechellia] gi|194135556|gb|EDW57072.1| GM16084 [Drosophila sechellia] gi|194194920|gb|EDX08496.1| GD11825 [Drosophila simulans]

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/120 (73%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   E+ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58377938|ref|XP_308155.2| AGAP007722-PA [Anopheles gambiae str. PEST] gi|74921611|sp|Q7QJX9.2|KAD2_ANOGA RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2 gi|55245178|gb|EAA04739.2| AGAP007722-PA [Anopheles gambiae str. PEST]

 Score =  181 bits (459), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAPLAYPLP-KESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP A  L  K + +STG+NAILLGPPGSGKGTQAPL  +KYCVCHLSTGDMLRAE++SG
Sbjct: 1   MAPNAAELKVKPASDSTGINAILLGPPGSGKGTQAPLLKEKYCVCHLSTGDMLRAEIASG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MD GKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAQLKKVMDEGKLVSDELVVDMIDSNLDKPECRNGFLLDGFPRTVVQAEKLDNLLEK 120

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260827397|ref|XP_002608651.1| hypothetical protein BRAFLDRAFT_115743 [Branchiostoma floridae] gi|229294003|gb|EEN64661.1| hypothetical protein BRAFLDRAFT_115743 [Branchiostoma floridae]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/117 (71%), Positives = 99/117 (84%)

Query: 1   MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60
           MAP+  P P    +S G+ AILLGPPG+GKGTQAP  A+KYCVCHL+TGDMLRA V+SGS
Sbjct: 1   MAPVPKPQPAAEEQSVGIRAILLGPPGAGKGTQAPKLAEKYCVCHLATGDMLRAVVASGS 60

Query: 61  NLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
            LGK+LKETMD GKLVSDE+VV++I NNLDKPEC+NGFLLDGFPRTV QA+K+  L+
Sbjct: 61  ELGKRLKETMDQGKLVSDEMVVEMIDNNLDKPECKNGFLLDGFPRTVTQAKKLDDLL 117

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194885988|ref|XP_001976526.1| GG22922 [Drosophila erecta] gi|224493073|sp|B3NQ53.1|KAD2_DROER RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2 gi|190659713|gb|EDV56926.1| GG22922 [Drosophila erecta]

 Score =  181 bits (458), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   ++ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPQTLGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194754367|ref|XP_001959467.1| GF12891 [Drosophila ananassae] gi|224493072|sp|B3MCQ5.1|KAD2_DROAN RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2 gi|190620765|gb|EDV36289.1| GF12891 [Drosophila ananassae]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 102/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAPLA-YPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP A  P+ +   E  G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPTAAVPVERYEPERIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSD+LVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|22026816|ref|NP_523836.2| adenylate kinase-2 [Drosophila melanogaster] gi|74947162|sp|Q9U915.1|KAD2_DROME RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2 gi|17863032|gb|AAL39993.1| SD09634p [Drosophila melanogaster] gi|20043237|dbj|BAA87877.1| Dak2 [Drosophila melanogaster] gi|21626704|gb|AAF47139.2| adenylate kinase-2 [Drosophila melanogaster] gi|220944508|gb|ACL84797.1| Adk2-PA [synthetic construct]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   E+ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSD+LVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195489453|ref|XP_002092744.1| GE14359 [Drosophila yakuba] gi|224493087|sp|B4PAR6.1|KAD2_DROYA RecName: Full=Adenylate kinase 2, mitochondrial; Short=AK 2; AltName: Full=ATP-AMP transphosphorylase 2 gi|194178845|gb|EDW92456.1| GE14359 [Drosophila yakuba]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/120 (72%), Positives = 103/120 (85%), Gaps = 1/120 (0%)

Query: 1   MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
           MAP  A P+ +   ++ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct: 1   MAPNAAVPVERYEPQNIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query: 60  SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           S LG +LK+ MDAGKLVSDELVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct: 61  SKLGAELKKVMDAGKLVSDELVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156538681|ref|XP_001607764.1| PREDICTED: adenylate kinase 2, mitochondrial [Nasonia vitripennis]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 85/121 (70%), Positives = 101/121 (83%), Gaps = 2/121 (1%)

Query: 1   MAPLAYPLPKESHE--STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58
           MAP    LPKE+ E  S G+NA+LLGPPGSGKGTQAP+  ++YCVCHLSTGDMLRAE+ S
Sbjct: 1   MAPKTESLPKENVEEPSRGINAVLLGPPGSGKGTQAPMLKERYCVCHLSTGDMLRAEIQS 60

Query: 59  GSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
           GS LG +LK+ MDAGKLVSD+LVV++I  NL+KPECQ GFLLDGFPRTVPQAEK+  ++ 
Sbjct: 61  GSALGAELKKVMDAGKLVSDDLVVNMIDKNLEKPECQRGFLLDGFPRTVPQAEKLDEMLE 120

Query: 119 K 119
           K
Sbjct: 121 K 121

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
FB|FBgn0022708	240	Adk2 "Adenylate kinase-2" [Dro	1.0	0.495	0.725	9.3e-43
ZFIN|ZDB-GENE-030131-512	241	ak2 "adenylate kinase 2" [Dani	1.0	0.493	0.697	3.7e-39
UNIPROTKB|P08166	241	AK2 "Adenylate kinase 2, mitoc	0.957	0.473	0.700	2.6e-38
UNIPROTKB|E2RE39	241	AK2 "Uncharacterized protein"	0.957	0.473	0.692	3.4e-38
RGD|2077	239	Ak2 "adenylate kinase 2" [Ratt	0.983	0.489	0.680	3.4e-38
UNIPROTKB|F1NJ73	189	AK2 "Uncharacterized protein"	0.865	0.544	0.737	4.3e-38
MGI|MGI:87978	239	Ak2 "adenylate kinase 2" [Mus	0.983	0.489	0.672	1.9e-37
UNIPROTKB|F8VZG5	162	AK2 "Adenylate kinase 2, mitoc	0.983	0.722	0.663	3.9e-37
UNIPROTKB|F8W1A4	232	AK2 "Adenylate kinase 2, mitoc	0.983	0.504	0.663	3.9e-37
UNIPROTKB|P54819	239	AK2 "Adenylate kinase 2, mitoc	0.983	0.489	0.663	3.9e-37

FB|FBgn0022708 Adk2 "Adenylate kinase-2" [Drosophila melanogaster (taxid:7227)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 87/120 (72%), Positives = 103/120 (85%)

Query:     1 MAP-LAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG 59
             MAP  A P+ +   E+ G+NAILLGPPGSGKGTQAPL  +K+CVCHLSTGDMLRAE+SSG
Sbjct:     1 MAPNAAVPVERYEPENIGINAILLGPPGSGKGTQAPLLKEKFCVCHLSTGDMLRAEISSG 60

Query:    60 SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
             S LG +LK+ MDAGKLVSD+LVVD+I +NLDKPEC+NGFLLDGFPRTV QAEK+ +L+ K
Sbjct:    61 SKLGAELKKVMDAGKLVSDDLVVDMIDSNLDKPECKNGFLLDGFPRTVVQAEKLDTLLDK 120

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0004017 "adenylate kinase activity" evidence=ISS;IMP;IDA

GO:0006172 "ADP biosynthetic process" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

ZFIN|ZDB-GENE-030131-512 ak2 "adenylate kinase 2" [Danio rerio (taxid:7955)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 83/119 (69%), Positives = 94/119 (78%)

Query:     1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60
             MAP        S    G+ AILLGPPG+GKGTQAP  A+KYCVCHL+TGDMLRA V+SGS
Sbjct:     1 MAPSTQEDDTVSGIRKGIRAILLGPPGAGKGTQAPKLAEKYCVCHLATGDMLRAMVASGS 60

Query:    61 NLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
              LG++LKETMDAGKLVSDE+VV+LI NNLD P C+NGFLLDGFPRTV QAE +  LM K
Sbjct:    61 ELGQRLKETMDAGKLVSDEMVVELIDNNLDTPACKNGFLLDGFPRTVKQAEMLDDLMEK 119

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0002521 "leukocyte differentiation" evidence=IMP

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

UNIPROTKB|P08166 AK2 "Adenylate kinase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 82/117 (70%), Positives = 95/117 (81%)

Query:     3 PLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNL 62
             P A P+P ES +  GV A+LLGPPG+GKGTQAP  AK +CVCHL+TGDMLRA V+SGS L
Sbjct:     6 PAAEPVP-ESPK--GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSEL 62

Query:    63 GKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
             GKKLK TMDAGKLVSDE+V++LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct:    63 GKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK 119

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RE39 AK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 81/117 (69%), Positives = 95/117 (81%)

Query:     3 PLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNL 62
             P A P P ES +  G+ A+LLGPPG+GKGTQAP  A+ +CVCHL+TGDMLRA V+SGS L
Sbjct:     6 PAAEPAP-ESPK--GIRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSEL 62

Query:    63 GKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
             GKKLK TMDAGKLVSDE+VV+LI  NL+ P+C+NGFLLDGFPRTV QAE +  LM K
Sbjct:    63 GKKLKATMDAGKLVSDEMVVELIEKNLETPQCKNGFLLDGFPRTVRQAEMLDDLMEK 119

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

RGD|2077 Ak2 "adenylate kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 81/119 (68%), Positives = 94/119 (78%)

Query:     1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60
             MAP A   P+  H   G+ A+LLGPPG+GKGTQAP  A+ +CVCHL+TGDMLRA V+SGS
Sbjct:     1 MAPNALA-PEPEHPE-GIRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGS 58

Query:    61 NLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
              LGKKLK TMDAGKLVSDE+VV+LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct:    59 ELGKKLKATMDAGKLVSDEMVVELIEKNLETPSCKNGFLLDGFPRTVKQAEMLDDLMDK 117

GO:0001889 "liver development" evidence=IEP

GO:0004017 "adenylate kinase activity" evidence=IDA;TAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006119 "oxidative phosphorylation" evidence=IEP

GO:0006172 "ADP biosynthetic process" evidence=IDA

GO:0007420 "brain development" evidence=IEP

GO:0036126 "sperm flagellum" evidence=ISO

GO:0046033 "AMP metabolic process" evidence=IDA

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046060 "dATP metabolic process" evidence=IDA

GO:0046083 "adenine metabolic process" evidence=TAS

GO:0097066 "response to thyroid hormone stimulus" evidence=IEP

GO:0097226 "sperm mitochondrial sheath" evidence=IEA;ISO

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IDA

UNIPROTKB|F1NJ73 AK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 76/103 (73%), Positives = 89/103 (86%)

Query:    17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76
             G+ A+LLGPPG+GKGTQAP  A+ YCVCHL+TGDMLRA V+SGS LGK+LKETMD+GKLV
Sbjct:    27 GIRAVLLGPPGAGKGTQAPKLAETYCVCHLATGDMLRAMVASGSELGKRLKETMDSGKLV 86

Query:    77 SDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
             SDE+VV+LI NNLD P C+NGFLLDGFPRTV QAE +  L+ K
Sbjct:    87 SDEMVVELIENNLDTPPCKNGFLLDGFPRTVKQAEMLDELLEK 129

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

MGI|MGI:87978 Ak2 "adenylate kinase 2" [Mus musculus (taxid:10090)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 80/119 (67%), Positives = 92/119 (77%)

Query:     1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60
             MAP    L  E     G+ A+LLGPPG+GKGTQAP  A+ +CVCHL+TGDMLRA V+SGS
Sbjct:     1 MAPNV--LASEPEIPKGIRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGS 58

Query:    61 NLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
              LGKKLK TMDAGKLVSDE+VV+LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct:    59 ELGKKLKATMDAGKLVSDEMVVELIEKNLETPSCKNGFLLDGFPRTVRQAEMLDDLMEK 117

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=ISO

GO:0036126 "sperm flagellum" evidence=IDA

GO:0046033 "AMP metabolic process" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046060 "dATP metabolic process" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISO

GO:0097226 "sperm mitochondrial sheath" evidence=IDA

UNIPROTKB|F8VZG5 AK2 "Adenylate kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 79/119 (66%), Positives = 94/119 (78%)

Query:     1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60
             MAP + P  +  +   G+ A+LLGPPG+GKGTQAP  A+ +CVCHL+TGDMLRA V+SGS
Sbjct:     1 MAP-SVPAAEPEYPK-GIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGS 58

Query:    61 NLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
              LGKKLK TMDAGKLVSDE+VV+LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct:    59 ELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEK 117

GO:0005524 "ATP binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0019205 "nucleobase-containing compound kinase activity" evidence=IEA

UNIPROTKB|F8W1A4 AK2 "Adenylate kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 79/119 (66%), Positives = 94/119 (78%)

Query:     1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60
             MAP + P  +  +   G+ A+LLGPPG+GKGTQAP  A+ +CVCHL+TGDMLRA V+SGS
Sbjct:     1 MAP-SVPAAEPEYPK-GIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGS 58

Query:    61 NLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
              LGKKLK TMDAGKLVSDE+VV+LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct:    59 ELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEK 117

GO:0005524 "ATP binding" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0046033 "AMP metabolic process" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0046060 "dATP metabolic process" evidence=IEA

GO:0097066 "response to thyroid hormone stimulus" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

UNIPROTKB|P54819 AK2 "Adenylate kinase 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 79/119 (66%), Positives = 94/119 (78%)

Query:     1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS 60
             MAP + P  +  +   G+ A+LLGPPG+GKGTQAP  A+ +CVCHL+TGDMLRA V+SGS
Sbjct:     1 MAP-SVPAAEPEYPK-GIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGS 58

Query:    61 NLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
              LGKKLK TMDAGKLVSDE+VV+LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct:    59 ELGKKLKATMDAGKLVSDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEK 117

GO:0005524 "ATP binding" evidence=IEA

GO:0004017 "adenylate kinase activity" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006119 "oxidative phosphorylation" evidence=IEA

GO:0006172 "ADP biosynthetic process" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0046033 "AMP metabolic process" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=IEA

GO:0046060 "dATP metabolic process" evidence=IEA

GO:0097066 "response to thyroid hormone stimulus" evidence=IEA

GO:0097226 "sperm mitochondrial sheath" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28F55	KAD2_XENTR	2, ., 7, ., 4, ., 3	0.7281	0.8655	0.4273	yes	N/A
P29410	KAD2_RAT	2, ., 7, ., 4, ., 3	0.6806	0.9831	0.4895	yes	N/A
Q5B2V8	KAD1_EMENI	2, ., 7, ., 4, ., 3	0.5398	0.9243	0.4247	yes	N/A
Q9U915	KAD2_DROME	2, ., 7, ., 4, ., 3	0.725	1.0	0.4958	yes	N/A
Q7QJX9	KAD2_ANOGA	2, ., 7, ., 4, ., 3	0.7416	1.0	0.4958	yes	N/A
A3LV51	KAD1_PICST	2, ., 7, ., 4, ., 3	0.5686	0.8487	0.4056	yes	N/A
Q5REI7	KAD2_PONAB	2, ., 7, ., 4, ., 3	0.7281	0.8655	0.4309	yes	N/A
B0CH11	KAD_BRUSI	2, ., 7, ., 4, ., 3	0.5876	0.8151	0.5	yes	N/A
Q9WTP6	KAD2_MOUSE	2, ., 7, ., 4, ., 3	0.7281	0.8655	0.4309	yes	N/A
P08166	KAD2_BOVIN	2, ., 7, ., 4, ., 3	0.6837	0.9579	0.4730	yes	N/A
Q4WJ21	KAD1_ASPFU	2, ., 7, ., 4, ., 3	0.6020	0.8151	0.3774	yes	N/A
A8AJW9	KAD_CITK8	2, ., 7, ., 4, ., 3	0.6263	0.7647	0.4252	yes	N/A
P54819	KAD2_HUMAN	2, ., 7, ., 4, ., 3	0.7281	0.8655	0.4309	yes	N/A
Q1L8L9	KAD2_DANRE	2, ., 7, ., 4, ., 3	0.7669	0.8655	0.4273	yes	N/A
P0CO42	KAD1_CRYNJ	2, ., 7, ., 4, ., 3	0.5918	0.8151	0.3605	yes	N/A
Q6BLN9	KAD1_DEBHA	2, ., 7, ., 4, ., 3	0.5940	0.8403	0.4016	yes	N/A
Q54QJ9	KAD2_DICDI	2, ., 7, ., 4, ., 3	0.5607	0.8991	0.3876	yes	N/A
A5FZU4	KAD_ACICJ	2, ., 7, ., 4, ., 3	0.55	0.8403	0.4464	yes	N/A
P34346	KAD2_CAEEL	2, ., 7, ., 4, ., 3	0.6571	0.8823	0.4183	yes	N/A
A2QPN9	KAD1_ASPNC	2, ., 7, ., 4, ., 3	0.6020	0.8151	0.3759	yes	N/A
Q08480	KAD2_ORYSJ	2, ., 7, ., 4, ., 3	0.6060	0.8319	0.4074	yes	N/A
Q8YHL9	KAD_BRUME	2, ., 7, ., 4, ., 3	0.5876	0.8151	0.5	yes	N/A
O82514	KAD1_ARATH	2, ., 7, ., 4, ., 3	0.6060	0.8319	0.4024	yes	N/A
Q2UBH0	KAD1_ASPOR	2, ., 7, ., 4, ., 3	0.5918	0.8151	0.3759	yes	N/A
Q290A8	KAD2_DROPS	2, ., 7, ., 4, ., 3	0.75	1.0	0.4958	yes	N/A
Q74ZL1	KAD1_ASHGO	2, ., 7, ., 4, ., 3	0.5370	0.8991	0.3862	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.766
3rd Layer	2.7.4.3	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
PRK00279	215	PRK00279, adk, adenylate kinase; Reviewed	4e-55
pfam00406	186	pfam00406, ADK, Adenylate kinase	1e-54
cd01428	194	cd01428, ADK, Adenylate kinase (ADK) catalyzes the	5e-54
TIGR01351	210	TIGR01351, adk, adenylate kinase	4e-49
PLN02674	244	PLN02674, PLN02674, adenylate kinase	2e-42
COG0563	178	COG0563, Adk, Adenylate kinase and related kinases	1e-37
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-36
PRK02496	184	PRK02496, adk, adenylate kinase; Provisional	2e-35
PRK14532	188	PRK14532, PRK14532, adenylate kinase; Provisional	1e-34
PRK14531	183	PRK14531, PRK14531, adenylate kinase; Provisional	9e-32
PRK14528	186	PRK14528, PRK14528, adenylate kinase; Provisional	3e-31
PLN02842	505	PLN02842, PLN02842, nucleotide kinase	6e-31
PLN02459	261	PLN02459, PLN02459, probable adenylate kinase	9e-30
TIGR01360	188	TIGR01360, aden_kin_iso1, adenylate kinase, isozym	2e-27
PRK14527	191	PRK14527, PRK14527, adenylate kinase; Provisional	2e-27
PRK14529	223	PRK14529, PRK14529, adenylate kinase; Provisional	4e-27
PTZ00088	229	PTZ00088, PTZ00088, adenylate kinase 1; Provisiona	1e-23
TIGR01359	183	TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family	9e-23
PRK14526	211	PRK14526, PRK14526, adenylate kinase; Provisional	2e-22
PRK14530	215	PRK14530, PRK14530, adenylate kinase; Provisional	2e-19
PLN02200	234	PLN02200, PLN02200, adenylate kinase family protei	2e-18
cd02020	147	cd02020, CMPK, Cytidine monophosphate kinase (CMPK	6e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	8e-05
TIGR02173	171	TIGR02173, cyt_kin_arch, cytidylate kinase, putati	2e-04
COG0283	222	COG0283, Cmk, Cytidylate kinase [Nucleotide transp	4e-04
PRK04182	180	PRK04182, PRK04182, cytidylate kinase; Provisional	5e-04
PRK00023	225	PRK00023, cmk, cytidylate kinase; Provisional	0.001
COG1102	179	COG1102, Cmk, Cytidylate kinase [Nucleotide transp	0.002
TIGR03922	557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	0.002
PRK13477	512	PRK13477, PRK13477, bifunctional pantoate ligase/c	0.002

>gnl|CDD|234711 PRK00279, adk, adenylate kinase; Reviewed

 Score =  170 bits (433), Expect = 4e-55
 Identities = 59/93 (63%), Positives = 74/93 (79%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
             ILLGPPG+GKGTQA   A+KY + H+STGDMLRA V +G+ LGK+ K  MDAG+LV D
Sbjct: 2   RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           E+V+ L+   L +P+C+NGFLLDGFPRT+PQAE
Sbjct: 62  EIVIGLVKERLAQPDCKNGFLLDGFPRTIPQAE 94

Length = 215

>gnl|CDD|201213 pfam00406, ADK, Adenylate kinase

 Score =  168 bits (428), Expect = 1e-54
 Identities = 59/96 (61%), Positives = 76/96 (79%)

Query: 22  LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELV 81
           LLGPPG+GKGTQA    +KY + HLSTGD+LRAEV SG+ LGK+ KE MD G+LV DE+V
Sbjct: 1   LLGPPGAGKGTQAERIVQKYGIPHLSTGDLLRAEVKSGTELGKEAKEYMDKGELVPDEVV 60

Query: 82  VDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           + L+   L++ +C+NGFLLDGFPRTVPQAE +  ++
Sbjct: 61  IGLVKERLEQNDCKNGFLLDGFPRTVPQAEALEEML 96

Length = 186

>gnl|CDD|238713 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

 Score =  167 bits (424), Expect = 5e-54
 Identities = 60/101 (59%), Positives = 78/101 (77%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
             +LLGPPGSGKGTQA   AKKY + H+STGD+LR E++SG+ LGKK KE +D+GKLV D
Sbjct: 1   RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPD 60

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           E+V+ L+   L KP+C+ GF+LDGFPRTV QAE +  L+ +
Sbjct: 61  EIVIKLLKERLKKPDCKKGFILDGFPRTVDQAEALDELLDE 101

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. Length = 194

>gnl|CDD|233369 TIGR01351, adk, adenylate kinase

 Score =  155 bits (393), Expect = 4e-49
 Identities = 54/95 (56%), Positives = 71/95 (74%), Gaps = 1/95 (1%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
             +LLGPPGSGKGTQA   A+KY + H+STGD+LRAE+ +G+ LGKK KE M+ G+LV D
Sbjct: 1   RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPD 60

Query: 79  ELVVDLISNNLDK-PECQNGFLLDGFPRTVPQAEK 112
           E+V  L+   L +  + +NGF+LDGFPRT+ QAE 
Sbjct: 61  EIVNQLVKERLTQNQDNENGFILDGFPRTLSQAEA 95

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 210

>gnl|CDD|178279 PLN02674, PLN02674, adenylate kinase

 Score =  139 bits (351), Expect = 2e-42
 Identities = 60/99 (60%), Positives = 78/99 (78%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           IL+GPPGSGKGTQ+P+   +YC+CHL+TGDMLRA V++ + LG K KE MD G+LVSD+L
Sbjct: 35  ILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 94

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           VV +I   + KP CQ GF+LDGFPRTV QA+K+  ++ K
Sbjct: 95  VVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAK 133

Length = 244

>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide transport and metabolism]

 Score =  124 bits (314), Expect = 1e-37
 Identities = 45/91 (49%), Positives = 66/91 (72%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           ++LGPPG+GK T A   AKK  + HL TGD+LRA ++  + LG+++K+ +D G+LV DE+
Sbjct: 4   LILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEI 63

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           V  L+   LD+ +C+ GF+LDGFPRT+ QA 
Sbjct: 64  VNGLVKERLDEADCKAGFILDGFPRTLCQAR 94

Length = 178

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score =  126 bits (318), Expect = 1e-36
 Identities = 55/97 (56%), Positives = 76/97 (78%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           ILLGPPG+GKGTQA    ++Y +  LSTGDMLRA V++G+ +G K K+ M +G LV DE+
Sbjct: 4   ILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEV 63

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           VV +IS+ +++P+  NGF+LDGFPRTVPQAE + +L+
Sbjct: 64  VVGIISDRIEQPDAANGFILDGFPRTVPQAEALDALL 100

Length = 333

>gnl|CDD|179433 PRK02496, adk, adenylate kinase; Provisional

 Score =  119 bits (300), Expect = 2e-35
 Identities = 46/91 (50%), Positives = 63/91 (69%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           I LGPPG+GKGTQA + A+   + H+STGD+LR  +   + LG K +  MD G+LV D+L
Sbjct: 5   IFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQL 64

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           V+DL+   L +P+  NG++LDGFPR V QA 
Sbjct: 65  VLDLVQERLQQPDAANGWILDGFPRKVTQAA 95

Length = 184

>gnl|CDD|184729 PRK14532, PRK14532, adenylate kinase; Provisional

 Score =  117 bits (295), Expect = 1e-34
 Identities = 51/102 (50%), Positives = 69/102 (67%)

Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N IL GPP +GKGTQA    ++  +  LSTGDMLRA ++SGS LG+++K  MD G+LVS
Sbjct: 1   MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVS 60

Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           DE+V+ LI   L + E   G + DGFPRTV QAE +  ++  
Sbjct: 61  DEIVIALIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLAS 102

Length = 188

>gnl|CDD|172997 PRK14531, PRK14531, adenylate kinase; Provisional

 Score =  110 bits (276), Expect = 9e-32
 Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           + LGPPG+GKGTQA      + + HLSTGD+LR+EV++GS LG++ +  M+ G+LVSD L
Sbjct: 6   LFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDAL 65

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           V+ ++ + L       G+LLDGFPRTV QAE +  L+
Sbjct: 66  VLAIVESQLKALNSG-GWLLDGFPRTVAQAEALEPLL 101

Length = 183

>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional

 Score =  108 bits (272), Expect = 3e-31
 Identities = 46/99 (46%), Positives = 70/99 (70%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N I +GPPG+GKGTQA +  ++  +  +STGD+LR  V + + +G + K  MDAG LV D
Sbjct: 3   NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPD 62

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
            +V+ +I + + + +C+NGFLLDGFPRTV QA+ + +L+
Sbjct: 63  SVVIGIIKDRIREADCKNGFLLDGFPRTVEQADALDALL 101

Length = 186

>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase

 Score =  114 bits (286), Expect = 6e-31
 Identities = 44/97 (45%), Positives = 71/97 (73%), Gaps = 1/97 (1%)

Query: 24  GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD 83
           G P SGKGTQ  L   K+ + H+STGD+LRAEVS+G+++GK+ KE M++G+LV DE+V+ 
Sbjct: 4   GAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIA 63

Query: 84  LISNNLDKPE-CQNGFLLDGFPRTVPQAEKVYSLMMK 119
           +++  L + +  + G+LLDG+PR+  QA+ +  L ++
Sbjct: 64  MVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKLKIR 100

Length = 505

>gnl|CDD|215253 PLN02459, PLN02459, probable adenylate kinase

 Score =  107 bits (268), Expect = 9e-30
 Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 6/117 (5%)

Query: 1   MAPLAYPLPKESHES----TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV 56
            + LA  L      S      VN + LG PG GKGT A   +K   V H++TGD++R E+
Sbjct: 9   TSALADDLASACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEI 68

Query: 57  SSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ--NGFLLDGFPRTVPQAE 111
            S   LG +LKE ++ GKLV DE++  L+S  L+  E +  +GF+LDGFPRTV QAE
Sbjct: 69  KSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGESGFILDGFPRTVRQAE 125

Length = 261

>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily

 Score = 99.1 bits (247), Expect = 2e-27
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 22  LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELV 81
           ++G PGSGKGTQ     +KY   HLSTGD+LRAEV+SGS  GK+L+  M++G LV  + V
Sbjct: 8   IVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTV 67

Query: 82  VDLISNN-LDKPECQNGFLLDGFPRTVPQAEK 112
           +DL+ +  +       GFL+DG+PR V Q E+
Sbjct: 68  LDLLKDAMVAALGTSKGFLIDGYPREVKQGEE 99

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. Length = 188

>gnl|CDD|237745 PRK14527, PRK14527, adenylate kinase; Provisional

 Score = 99.1 bits (247), Expect = 2e-27
 Identities = 46/91 (50%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           I LGPPG+GKGTQA   A++  +  LSTGD+LR  V+ G+ LG++ K  M+AG LV DEL
Sbjct: 10  IFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDEL 69

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           ++ LI + L   E     + DGFPRT+ QAE
Sbjct: 70  ILALIRDELAGMEPVR-VIFDGFPRTLAQAE 99

Length = 191

>gnl|CDD|237746 PRK14529, PRK14529, adenylate kinase; Provisional

 Score = 99.4 bits (248), Expect = 4e-27
 Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 1/102 (0%)

Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N ++ GP GSGKGTQ  L  KKY + H+ +G + R  +  G+ LGKK KE +D G LV 
Sbjct: 1   MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVP 60

Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           D++ + +I   L K + +NG+LLDGFPR   QAEK++  + K
Sbjct: 61  DDITIPMILETL-KQDGKNGWLLDGFPRNKVQAEKLWEALQK 101

Length = 223

>gnl|CDD|240262 PTZ00088, PTZ00088, adenylate kinase 1; Provisional

 Score = 90.6 bits (225), Expect = 1e-23
 Identities = 35/92 (38%), Positives = 61/92 (66%), Gaps = 2/92 (2%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           +L G PG GKGT A + +KK  + H++ G++LR E+ + + +GK++++ + +G LV D L
Sbjct: 10  VLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNL 69

Query: 81  VVDLISNNLDKP--ECQNGFLLDGFPRTVPQA 110
           V+ ++ + + K   +C  GF+LDGFPR + Q 
Sbjct: 70  VIAIVKDEIAKVTDDCFKGFILDGFPRNLKQC 101

Length = 229

>gnl|CDD|130426 TIGR01359, UMP_CMP_kin_fam, UMP-CMP kinase family

 Score = 87.0 bits (216), Expect = 9e-23
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 23  LGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVV 82
           LG PGSGKGTQ     + +   HLS GD+LRAE+ SGS  G+ ++  +  GK+V  E+ V
Sbjct: 5   LGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTV 64

Query: 83  DLISNNLDKPECQN-GFLLDGFPR 105
            L+ N +      +  FL+DGFPR
Sbjct: 65  KLLKNAIQ--ADGSKKFLIDGFPR 86

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. Length = 183

>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional

 Score = 87.2 bits (216), Expect = 2e-22
 Identities = 34/91 (37%), Positives = 61/91 (67%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           + LGPPGSGKGT A + + +    H+STGD+ R  + + + LGK++K+ ++ G+LV D +
Sbjct: 4   VFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSI 63

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
            + ++ + ++  +  + F+LDGFPR + QA+
Sbjct: 64  TIKIVEDKINTIKNNDNFILDGFPRNINQAK 94

Length = 211

>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional

 Score = 79.1 bits (195), Expect = 2e-19
 Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 7/95 (7%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA-EVSSGSNLGKKL---KETMDAGKLV 76
           +LLG PG+GKGTQ+   A+++ V H++TGD LRA +    S++  +     E MDAG+LV
Sbjct: 7   LLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELV 66

Query: 77  SDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
            D +V +++   L   +   GF+LDG+PR + QAE
Sbjct: 67  PDAVVNEIVEEALSDAD---GFVLDGYPRNLEQAE 98

Length = 215

>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein

 Score = 76.9 bits (189), Expect = 2e-18
 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 1/95 (1%)

Query: 12  SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
           S E T     +LG PGSGKGTQ     + +   HLS GD+LR E++S S  G  +  T+ 
Sbjct: 38  SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK 97

Query: 72  AGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRT 106
            GK+V  E+ V LI   ++  +  N FL+DGFPRT
Sbjct: 98  EGKIVPSEVTVKLIQKEMESSD-NNKFLIDGFPRT 131

Length = 234

>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 17/35 (48%), Positives = 20/35 (57%)

Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS 58
          GP GSGK T A L AKK  + +L TG +   EV  
Sbjct: 6  GPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK 40

Length = 147

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 38.8 bits (90), Expect = 8e-05
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           ++ GPPGSGK T A   A+K  +  +S  D+LR E              +D G+L   ++
Sbjct: 3   LITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEG----------LAELDDGELDDIDI 52

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTV 107
            ++L+   LD    +  +++DG   + 
Sbjct: 53  DLELLEEILD-ELAKQEWVIDGVREST 78

Length = 114

>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53
          GPPGSGK T A + A+K  +  +S GD+ R
Sbjct: 7  GPPGSGKTTVAKILAEKLSLKLISAGDIFR 36

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. Length = 171

>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 16/31 (51%), Positives = 19/31 (61%)

Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
          GP GSGK T A + A+K    +L TG M RA
Sbjct: 11 GPAGSGKSTVAKILAEKLGFHYLDTGAMYRA 41

Length = 222

>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53
          GPPGSGK T A L A+K  + H+S G++ R
Sbjct: 7  GPPGSGKTTVARLLAEKLGLKHVSAGEIFR 36

Length = 180

>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 10/67 (14%)

Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD 83
          GP GSGKGT A + AKK    +L TG M RA       +       +  G  + DE  + 
Sbjct: 11 GPAGSGKGTVAKILAKKLGFHYLDTGAMYRA-------VALAA---LRHGVDLEDEEALV 60

Query: 84 LISNNLD 90
           ++ +LD
Sbjct: 61 ALAAHLD 67

Length = 225

>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and metabolism]

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLR 53
          G PGSGK T A   A+   +  +S G + R
Sbjct: 7  GLPGSGKTTVARELAEHLGLKLVSAGTIFR 36

Length = 179

>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYC 42
           +  GPPG+GK T A + AK YC
Sbjct: 316 LFAGPPGTGKTTIARVVAKIYC 337

This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557

>gnl|CDD|237393 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase; Provisional

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 24  GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA 54
           GP G+GK T     AKK  + +L TG M RA
Sbjct: 291 GPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321

Length = 512

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
PLN02674	244	adenylate kinase	99.97
KOG3079|consensus	195		99.97
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.97
PRK14529	223	adenylate kinase; Provisional	99.96
PLN02459	261	probable adenylate kinase	99.96
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.96
PRK13808	333	adenylate kinase; Provisional	99.96
PTZ00088	229	adenylate kinase 1; Provisional	99.95
PRK14532	188	adenylate kinase; Provisional	99.95
PRK14526	211	adenylate kinase; Provisional	99.95
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.95
PRK00279	215	adk adenylate kinase; Reviewed	99.95
PRK14528	186	adenylate kinase; Provisional	99.95
PRK14531	183	adenylate kinase; Provisional	99.94
PRK02496	184	adk adenylate kinase; Provisional	99.94
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.94
PLN02200	234	adenylate kinase family protein	99.93
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.93
PRK14527	191	adenylate kinase; Provisional	99.92
KOG3078|consensus	235		99.89
PRK14530	215	adenylate kinase; Provisional	99.89
PLN02842	505	nucleotide kinase	99.89
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.88
PRK01184	184	hypothetical protein; Provisional	99.62
PRK08356	195	hypothetical protein; Provisional	99.57
PRK08118	167	topology modulation protein; Reviewed	99.54
PRK03839	180	putative kinase; Provisional	99.42
PRK06217	183	hypothetical protein; Validated	99.4
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.37
PHA02530	300	pseT polynucleotide kinase; Provisional	99.36
PRK13949	169	shikimate kinase; Provisional	99.34
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.33
PRK07261	171	topology modulation protein; Provisional	99.28
PRK04182	180	cytidylate kinase; Provisional	99.23
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.22
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.2
KOG3347|consensus	176		99.19
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.18
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.17
PRK04040	188	adenylate kinase; Provisional	99.17
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.14
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.12
PRK13948	182	shikimate kinase; Provisional	99.12
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.12
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	99.11
PRK00625	173	shikimate kinase; Provisional	99.11
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	99.09
PRK14734	200	coaE dephospho-CoA kinase; Provisional	99.07
PRK13947	171	shikimate kinase; Provisional	99.07
PRK06762	166	hypothetical protein; Provisional	99.04
PRK00131	175	aroK shikimate kinase; Reviewed	99.04
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.02
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.99
PRK13946	184	shikimate kinase; Provisional	98.98
PLN02422	232	dephospho-CoA kinase	98.98
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.97
PRK08233	182	hypothetical protein; Provisional	98.95
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.94
PTZ00451	244	dephospho-CoA kinase; Provisional	98.94
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.93
PRK14733	204	coaE dephospho-CoA kinase; Provisional	98.92
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.9
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	98.89
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.89
CHL00181	287	cbbX CbbX; Provisional	98.89
PLN02199	303	shikimate kinase	98.87
PRK03731	171	aroL shikimate kinase II; Reviewed	98.86
PRK06547	172	hypothetical protein; Provisional	98.84
PRK12338	319	hypothetical protein; Provisional	98.82
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.82
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.81
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.79
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.79
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.78
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.78
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.78
PRK13974	212	thymidylate kinase; Provisional	98.77
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	98.76
PRK05057	172	aroK shikimate kinase I; Reviewed	98.75
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.72
PRK13973	213	thymidylate kinase; Provisional	98.72
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.71
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	98.71
PRK00023	225	cmk cytidylate kinase; Provisional	98.7
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.7
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	98.68
KOG3354|consensus	191		98.67
PRK13975	196	thymidylate kinase; Provisional	98.66
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.65
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.65
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	98.63
PF00004	132	AAA: ATPase family associated with various cellula	98.62
PLN02165	334	adenylate isopentenyltransferase	98.61
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.6
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.6
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.6
KOG3220|consensus	225		98.59
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	98.59
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	98.58
PHA00729	226	NTP-binding motif containing protein	98.58
PRK06696	223	uridine kinase; Validated	98.57
PRK08181	269	transposase; Validated	98.56
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.54
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.54
PLN02748	468	tRNA dimethylallyltransferase	98.53
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.52
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.51
PRK05541	176	adenylylsulfate kinase; Provisional	98.51
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.51
PRK05480	209	uridine/cytidine kinase; Provisional	98.49
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.48
PRK06526	254	transposase; Provisional	98.46
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	98.45
KOG0733|consensus	802		98.44
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.44
PRK06921	266	hypothetical protein; Provisional	98.44
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.43
PRK12377	248	putative replication protein; Provisional	98.42
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.42
PRK00889	175	adenylylsulfate kinase; Provisional	98.42
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.41
PRK09183	259	transposase/IS protein; Provisional	98.41
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.4
PRK06835	329	DNA replication protein DnaC; Validated	98.39
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	98.39
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.39
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.38
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.37
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.35
smart00382	148	AAA ATPases associated with a variety of cellular	98.35
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.33
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.33
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.33
PRK03846	198	adenylylsulfate kinase; Provisional	98.32
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	98.32
PF13173	128	AAA_14: AAA domain	98.32
PLN02840	421	tRNA dimethylallyltransferase	98.31
KOG0744|consensus	423		98.31
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	98.31
PRK07667	193	uridine kinase; Provisional	98.31
PRK09825	176	idnK D-gluconate kinase; Provisional	98.29
PF05729	166	NACHT: NACHT domain	98.29
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.29
PRK08116	268	hypothetical protein; Validated	98.28
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.28
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.28
PLN02924	220	thymidylate kinase	98.28
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.28
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.27
PTZ00301	210	uridine kinase; Provisional	98.27
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.27
PRK00698	205	tmk thymidylate kinase; Validated	98.26
PRK05439	311	pantothenate kinase; Provisional	98.26
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.26
KOG0735|consensus	952		98.25
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.25
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.24
COG0645	170	Predicted kinase [General function prediction only	98.24
PRK09087	226	hypothetical protein; Validated	98.24
PRK15453	290	phosphoribulokinase; Provisional	98.23
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	98.23
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	98.22
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.22
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.22
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.22
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	98.21
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.2
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.19
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	98.19
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.18
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.16
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.16
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.15
PRK00300	205	gmk guanylate kinase; Provisional	98.14
PRK14738	206	gmk guanylate kinase; Provisional	98.14
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	98.13
PRK11545	163	gntK gluconate kinase 1; Provisional	98.13
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	98.13
CHL00195	489	ycf46 Ycf46; Provisional	98.13
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.12
PRK08939	306	primosomal protein DnaI; Reviewed	98.12
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.12
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.11
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.11
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.11
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.1
PRK07952	244	DNA replication protein DnaC; Validated	98.1
PRK07429	327	phosphoribulokinase; Provisional	98.09
KOG0733|consensus	802		98.09
PRK06620	214	hypothetical protein; Validated	98.09
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.08
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	98.08
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.08
PRK06761	282	hypothetical protein; Provisional	98.08
KOG0730|consensus	693		98.08
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	98.06
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.06
PRK06893	229	DNA replication initiation factor; Validated	98.06
PRK14737	186	gmk guanylate kinase; Provisional	98.05
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.05
PRK08084	235	DNA replication initiation factor; Provisional	98.05
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.05
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.04
PLN02348	395	phosphoribulokinase	98.03
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.03
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	98.03
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	98.02
KOG0734|consensus	752		98.02
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.02
PHA02244	383	ATPase-like protein	98.02
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.02
PRK05642	234	DNA replication initiation factor; Validated	98.01
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.01
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.0
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.99
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.99
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.99
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.98
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.98
PLN02796	347	D-glycerate 3-kinase	97.98
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.97
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.96
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.96
PRK04195	482	replication factor C large subunit; Provisional	97.96
KOG1970|consensus	634		97.96
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.96
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.96
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.95
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.95
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	97.95
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.95
KOG3308|consensus	225		97.95
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.95
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.95
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.94
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.94
PRK06067	234	flagellar accessory protein FlaH; Validated	97.93
PRK13342	413	recombination factor protein RarA; Reviewed	97.93
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.92
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.91
PRK04328	249	hypothetical protein; Provisional	97.91
KOG0739|consensus	439		97.9
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.9
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.89
PF07726	131	AAA_3: ATPase family associated with various cellu	97.89
PRK14088	440	dnaA chromosomal replication initiation protein; P	97.89
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.89
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.89
PRK10416	318	signal recognition particle-docking protein FtsY;	97.89
KOG0731|consensus	774		97.88
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.88
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.88
PRK00149	450	dnaA chromosomal replication initiation protein; R	97.88
KOG0727|consensus	408		97.88
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.87
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.87
PRK12402	337	replication factor C small subunit 2; Reviewed	97.87
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.87
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	97.87
PRK13341	725	recombination factor protein RarA/unknown domain f	97.87
PF13245	76	AAA_19: Part of AAA domain	97.87
CHL00176	638	ftsH cell division protein; Validated	97.86
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.85
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.85
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.84
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.84
PLN03046	460	D-glycerate 3-kinase; Provisional	97.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.82
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.82
KOG0738|consensus	491		97.81
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.81
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	97.81
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.8
KOG0651|consensus	388		97.8
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	97.8
COG4639	168	Predicted kinase [General function prediction only	97.8
PRK12422	445	chromosomal replication initiation protein; Provis	97.78
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.78
PLN02318	656	phosphoribulokinase/uridine kinase	97.78
KOG0736|consensus	953		97.78
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.77
PRK08727	233	hypothetical protein; Validated	97.77
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.77
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	97.77
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.77
PLN03025	319	replication factor C subunit; Provisional	97.76
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.75
KOG0737|consensus	386		97.74
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.74
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.73
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	97.73
CHL00206	2281	ycf2 Ycf2; Provisional	97.73
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.72
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.72
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.71
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.71
KOG2004|consensus	906		97.71
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	97.7
KOG1969|consensus	877		97.7
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.7
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	97.69
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.69
PF13189	179	Cytidylate_kin2: Cytidylate kinase-like family; PD	97.69
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.69
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.69
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.68
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.68
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.68
COG4619	223	ABC-type uncharacterized transport system, ATPase	97.68
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	97.67
PRK13695	174	putative NTPase; Provisional	97.67
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.67
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.65
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	97.65
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	97.65
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.65
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.65
KOG3877|consensus	393		97.65
KOG0635|consensus	207		97.64
COG1855	604	ATPase (PilT family) [General function prediction	97.64
KOG0729|consensus	435		97.63
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.63
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.63
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	97.62
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.62
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.62
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.61
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	97.61
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.61
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.6
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.6
PHA02544	316	44 clamp loader, small subunit; Provisional	97.6
TIGR02236	310	recomb_radA DNA repair and recombination protein R	97.6
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.59
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.59
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.59
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	97.59
PF13479	213	AAA_24: AAA domain	97.59
COG4240	300	Predicted kinase [General function prediction only	97.58
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.58
PRK14974	336	cell division protein FtsY; Provisional	97.58
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.58
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	97.58
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.58
PRK15455	644	PrkA family serine protein kinase; Provisional	97.58
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.57
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.57
KOG0743|consensus	457		97.57
PRK09302	509	circadian clock protein KaiC; Reviewed	97.57
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.57
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.56
COG3911	183	Predicted ATPase [General function prediction only	97.56
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.56
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	97.56
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.56
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.55
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	97.55
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	97.55
KOG0989|consensus	346		97.55
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.54
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.54
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.54
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.53
COG0714	329	MoxR-like ATPases [General function prediction onl	97.53
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.53
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.53
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	97.53
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.52
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.52
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.52
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.52
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	97.52
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.52
KOG0991|consensus	333		97.52
cd01128	249	rho_factor Transcription termination factor rho is	97.51
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.51
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.51
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.51
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.51
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.51
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.51
PRK04301	317	radA DNA repair and recombination protein RadA; Va	97.51
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	97.51
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.51
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.51
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.5
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.5
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.5
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.5
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.49
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.49
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.49
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.49
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.49
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	97.49
PRK11823	446	DNA repair protein RadA; Provisional	97.49
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.49
PRK10867	433	signal recognition particle protein; Provisional	97.49
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.49
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.48
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.48
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.48
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	97.48
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.48
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.48
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.47
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.47
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.47
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	97.47
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.47
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.47
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.47
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.47
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.46
PRK13851	344	type IV secretion system protein VirB11; Provision	97.46
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.46
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.46
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.46
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.46
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	97.46
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.46
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.46
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.46
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.46
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.46
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.46
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.46
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.46
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.45
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.45
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.45
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	97.45
TIGR00959	428	ffh signal recognition particle protein. This mode	97.45
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	97.45
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.45
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	97.44
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.44
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.44
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	97.44
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	97.44
cd03246	173	ABCC_Protease_Secretion This family represents the	97.43
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	97.43
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	97.43
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.43
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.43
PRK09302	509	circadian clock protein KaiC; Reviewed	97.43
PRK13764	602	ATPase; Provisional	97.43
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.43
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.43
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	97.43
cd03215	182	ABC_Carb_Monos_II This family represents domain II	97.43
PLN02772	398	guanylate kinase	97.43
PRK10908	222	cell division protein FtsE; Provisional	97.43
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.42
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	97.42
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.42
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.42
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.42
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	97.42
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	97.42
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.42
cd03116	159	MobB Molybdenum is an essential trace element in t	97.42
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.42
cd03234	226	ABCG_White The White subfamily represents ABC tran	97.42
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	97.41
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	97.41
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	97.41
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	97.41
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	97.41
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.41
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.41
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.41
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.41
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	97.41
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.41
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.41
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	97.41
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.41
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.41
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	97.41
KOG1533|consensus	290		97.41
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	97.41
PRK10646	153	ADP-binding protein; Provisional	97.4
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.4
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	97.4
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	97.4
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.4
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	97.4
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.4
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.4
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.4
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.4
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.4
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	97.4
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.4
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	97.4
PRK10865	857	protein disaggregation chaperone; Provisional	97.39
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.39
PRK04296	190	thymidine kinase; Provisional	97.39
PRK13768	253	GTPase; Provisional	97.39

>PLN02674 adenylate kinase

Probab=99.97  E-value=1.1e-30  Score=183.49  Aligned_cols=102  Identities=58%  Similarity=1.048  Sum_probs=97.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN   96 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~   96 (119)
                      ..+|+|+|+|||||+|+|+.||++||+.|+|+++++++++..+++.|..+++++.+|.++|++++..++.+++...++.+
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~  110 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK  110 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999988889


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhh
Q psy9244          97 GFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        97 g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      ||||||||||..|++.|++.+.
T Consensus       111 g~ilDGfPRt~~Qa~~l~~~l~  132 (244)
T PLN02674        111 GFILDGFPRTVVQAQKLDEMLA  132 (244)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998764

>KOG3079|consensus

Probab=99.97  E-value=3.4e-30  Score=171.82  Aligned_cols=107  Identities=39%  Similarity=0.632  Sum_probs=101.7

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc-CCcHHHHHHhhhhcCcccCHHHHHHHHHHhhc
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS-GSNLGKKLKETMDAGKLVSDELVVDLISNNLD   90 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~   90 (119)
                      +.+..+++|||+|+|||||.|+|.+++++|++.|+|++||+|++... +++.|..+++++.+|..+|.+++..+|.+.|.
T Consensus         3 ~~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~   82 (195)
T KOG3079|consen    3 PKLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMR   82 (195)
T ss_pred             CcccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999988 89999999999999999999999999999999


Q ss_pred             CCCCCCcEEEeCCCCCHHHHHHHHHHhh
Q psy9244          91 KPECQNGFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        91 ~~~~~~g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      +....++|+||||||+.+|+..|++.++
T Consensus        83 ~~~~~~~fLIDGyPR~~~q~~~fe~~i~  110 (195)
T KOG3079|consen   83 SSGDSNGFLIDGYPRNVDQLVEFERKIQ  110 (195)
T ss_pred             hcCCCCeEEecCCCCChHHHHHHHHHhc
Confidence            9887778999999999999999999875

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.97  E-value=3.9e-30  Score=169.23  Aligned_cols=96  Identities=54%  Similarity=1.013  Sum_probs=89.3

Q ss_pred             EEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcEEEe
Q psy9244          22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLD  101 (119)
Q Consensus        22 i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~vld  101 (119)
                      |+|+|||||||+|+.||++||+.|||+++++++++..+++.+..+++++.+|..+|++++.+++..+|.+..+.+|||||
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            68999999999999999999999999999999999999999999999999999999999999999999988677899999


Q ss_pred             CCCCCHHHHHHHHHHh
Q psy9244         102 GFPRTVPQAEKVYSLM  117 (119)
Q Consensus       102 g~P~~~~q~~~l~~~l  117 (119)
                      |||||.+|++.|++.+
T Consensus        81 GfPrt~~Qa~~l~~~~   96 (151)
T PF00406_consen   81 GFPRTLEQAEALEEIL   96 (151)
T ss_dssp             SB-SSHHHHHHHHHHH
T ss_pred             eccccHHHHHHHHHHH
Confidence            9999999999999854

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14529 adenylate kinase; Provisional

Probab=99.96  E-value=2.5e-29  Score=174.66  Aligned_cols=100  Identities=44%  Similarity=0.827  Sum_probs=95.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.|+++|++.|+|.++++++++..+++.+..+++++.+|..+|++++..++.++|.+.+ .+|
T Consensus         1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g   79 (223)
T PRK14529          1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNG   79 (223)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCc
Confidence            3699999999999999999999999999999999999998899999999999999999999999999999999877 789


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      |||||||||.+||+.|++.++
T Consensus        80 ~iLDGfPRt~~Qa~~l~~~l~  100 (223)
T PRK14529         80 WLLDGFPRNKVQAEKLWEALQ  100 (223)
T ss_pred             EEEeCCCCCHHHHHHHHHHHH
Confidence            999999999999999988764

>PLN02459 probable adenylate kinase

Probab=99.96  E-value=6e-29  Score=175.63  Aligned_cols=100  Identities=48%  Similarity=0.776  Sum_probs=94.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC--CC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP--EC   94 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~--~~   94 (119)
                      +++|+|+|+|||||||+|+.|+++||+.|+|+++++++++..+++++..++.++.+|.++|++++..++.++|.+.  .+
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~  108 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEG  108 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccC
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999999875  34


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHH
Q psy9244          95 QNGFLLDGFPRTVPQAEKVYSL  116 (119)
Q Consensus        95 ~~g~vldg~P~~~~q~~~l~~~  116 (119)
                      ..||||||||||.+|++.|++.
T Consensus       109 ~~g~iLDGFPRt~~Qa~~Le~~  130 (261)
T PLN02459        109 ESGFILDGFPRTVRQAEILEGV  130 (261)
T ss_pred             CceEEEeCCCCCHHHHHHHHhc
Confidence            6899999999999999999864

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.96  E-value=1.6e-28  Score=165.74  Aligned_cols=101  Identities=46%  Similarity=0.830  Sum_probs=97.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.|++++++.|+|.+++++......++++..++.++..|.++|++++..++.+++...+|..+
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~   80 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAG   80 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCe
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999987779


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      ||+|||||+..|++.|++.|.
T Consensus        81 ~I~dg~PR~~~qa~~l~r~l~  101 (178)
T COG0563          81 FILDGFPRTLCQARALKRLLK  101 (178)
T ss_pred             EEEeCCCCcHHHHHHHHHHHH
Confidence            999999999999999999875

>PRK13808 adenylate kinase; Provisional

Probab=99.96  E-value=1.8e-28  Score=178.36  Aligned_cols=101  Identities=54%  Similarity=0.948  Sum_probs=96.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.|+++||+.|+++++++++++..+++.+..+.+++..|.++|++++..++.++|...++..|
T Consensus         1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G   80 (333)
T PRK13808          1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG   80 (333)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999888889


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      |||||||||.+|++.|++.+.
T Consensus        81 ~ILDGFPRt~~QA~~L~~ll~  101 (333)
T PRK13808         81 FILDGFPRTVPQAEALDALLK  101 (333)
T ss_pred             EEEeCCCCCHHHHHHHHHHHH
Confidence            999999999999999988764

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.95  E-value=6.1e-28  Score=168.58  Aligned_cols=101  Identities=35%  Similarity=0.758  Sum_probs=94.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC--CC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK--PE   93 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~--~~   93 (119)
                      .+++|+|+|+|||||||+|+.||++||+.|+|+++++++++..+++.+..+++++.+|.++|++++..++.+++.+  .+
T Consensus         5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~   84 (229)
T PTZ00088          5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD   84 (229)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence            4578999999999999999999999999999999999999998899999999999999999999999999999988  55


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHH
Q psy9244          94 CQNGFLLDGFPRTVPQAEKVYSL  116 (119)
Q Consensus        94 ~~~g~vldg~P~~~~q~~~l~~~  116 (119)
                      +..||||||||||..|++.|++.
T Consensus        85 ~~~g~iLDGfPRt~~Qa~~l~~~  107 (229)
T PTZ00088         85 CFKGFILDGFPRNLKQCKELGKI  107 (229)
T ss_pred             cCceEEEecCCCCHHHHHHHHhc
Confidence            67899999999999999998763

>PRK14532 adenylate kinase; Provisional

Probab=99.95  E-value=2e-27  Score=161.14  Aligned_cols=100  Identities=51%  Similarity=0.834  Sum_probs=94.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcE
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF   98 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~   98 (119)
                      +|+|+|+|||||||+|+.||+++|+.|+|+++++++.+..+++.+..+++++..|..+|++++..++.+++...++..||
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~   81 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGA   81 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcE
Confidence            69999999999999999999999999999999999999888899999999999999999999999999999888888899


Q ss_pred             EEeCCCCCHHHHHHHHHHhh
Q psy9244          99 LLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        99 vldg~P~~~~q~~~l~~~l~  118 (119)
                      ||||||||.+|++.+++.+.
T Consensus        82 vldg~pr~~~q~~~~~~~l~  101 (188)
T PRK14532         82 IFDGFPRTVAQAEALDKMLA  101 (188)
T ss_pred             EEeCCCCCHHHHHHHHHHHH
Confidence            99999999999999987764

>PRK14526 adenylate kinase; Provisional

Probab=99.95  E-value=1.8e-27  Score=164.54  Aligned_cols=99  Identities=34%  Similarity=0.758  Sum_probs=94.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcE
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF   98 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~   98 (119)
                      +|+|+|+|||||||+|+.|++.+++.|+|.+++++++....++.+..++++++.|..+|++++.+++.++|...++..||
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~   81 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNF   81 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcE
Confidence            68999999999999999999999999999999999999989999999999999999999999999999999988778899


Q ss_pred             EEeCCCCCHHHHHHHHHHh
Q psy9244          99 LLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        99 vldg~P~~~~q~~~l~~~l  117 (119)
                      ||||||||.+|++.|++.+
T Consensus        82 ilDGfPR~~~Qa~~l~~~~  100 (211)
T PRK14526         82 ILDGFPRNINQAKALDKFL  100 (211)
T ss_pred             EEECCCCCHHHHHHHHHhc
Confidence            9999999999999998764

>TIGR01351 adk adenylate kinases

Probab=99.95  E-value=3e-27  Score=163.07  Aligned_cols=100  Identities=55%  Similarity=0.906  Sum_probs=93.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC-CCCc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE-CQNG   97 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~-~~~g   97 (119)
                      +|+|+|+|||||||+|+.||++||+.|+++++++++++..+++.+..+.+++..|..+|++++.+++.++|.+.+ ...|
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~   80 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENG   80 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence            489999999999999999999999999999999999999889999999999999999999999999999998854 3679


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      |||||||||.+|++.|++.+.
T Consensus        81 ~ilDGfPrt~~Qa~~l~~~~~  101 (210)
T TIGR01351        81 FILDGFPRTLSQAEALDALLK  101 (210)
T ss_pred             EEEeCCCCCHHHHHHHHHHhc
Confidence            999999999999999988753

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.95  E-value=5.8e-27  Score=162.16  Aligned_cols=101  Identities=58%  Similarity=1.031  Sum_probs=95.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.||++||+.|++++++++++...+++.+..+.+++..|..+|++++..++.+++...++.+|
T Consensus         1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g   80 (215)
T PRK00279          1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNG   80 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCC
Confidence            37999999999999999999999999999999999999998899999999999999999999999999999998877789


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      |||||||++.+|++.|++.++
T Consensus        81 ~VlDGfPr~~~qa~~l~~~l~  101 (215)
T PRK00279         81 FLLDGFPRTIPQAEALDEMLK  101 (215)
T ss_pred             EEEecCCCCHHHHHHHHHHHH
Confidence            999999999999999987763

>PRK14528 adenylate kinase; Provisional

Probab=99.95  E-value=1.1e-26  Score=157.75  Aligned_cols=101  Identities=46%  Similarity=0.858  Sum_probs=95.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      .+|+|+|+|||||||+|+.|+++||+.|+++++++++.+..+++.+..+..++..|..+|++++..++.+++.+.++..|
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      |||||||||.+|++.|++.+.
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~  102 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLK  102 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHH
Confidence            999999999999999988763

>PRK14531 adenylate kinase; Provisional

Probab=99.94  E-value=1.3e-26  Score=156.93  Aligned_cols=101  Identities=48%  Similarity=0.780  Sum_probs=93.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN   96 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~   96 (119)
                      ..+|+|+|+|||||||+|+.||++||+.|+|+++++++++..+++.+..++.++..|..+|++++..++.+++... ...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~-~~~   80 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKAL-NSG   80 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-cCC
Confidence            3589999999999999999999999999999999999999988999999999999999999999999999999764 357


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhh
Q psy9244          97 GFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        97 g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      ||||||||||..|++.|++.+.
T Consensus        81 g~ilDGfpr~~~q~~~~~~~~~  102 (183)
T PRK14531         81 GWLLDGFPRTVAQAEALEPLLE  102 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHH
Confidence            9999999999999999988654

>PRK02496 adk adenylate kinase; Provisional

Probab=99.94  E-value=2.5e-26  Score=155.42  Aligned_cols=101  Identities=47%  Similarity=0.816  Sum_probs=95.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      .+|+|+|+|||||||+|+.|+++||+.+++.++++++....+++.+..+..++..|..++++++..++.+++.+.++..|
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g   81 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANG   81 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCC
Confidence            57999999999999999999999999999999999999988899999999999999999999999999999998888889


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      |||||||||..|++.+++.++
T Consensus        82 ~vldGfPr~~~q~~~l~~~~~  102 (184)
T PRK02496         82 WILDGFPRKVTQAAFLDELLQ  102 (184)
T ss_pred             EEEeCCCCCHHHHHHHHHHHH
Confidence            999999999999999987653

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.94  E-value=6.5e-26  Score=152.91  Aligned_cols=98  Identities=41%  Similarity=0.696  Sum_probs=91.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcE
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF   98 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~   98 (119)
                      .|+|+|+|||||||+|+.||+++|+.|+|+++++++.+..+++.+..+++++.+|..+|++++.+++.+++.... .++|
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~-~~~~   79 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG-SKKF   79 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC-CCcE
Confidence            379999999999999999999999999999999999998778889999999999999999999999999998765 6799


Q ss_pred             EEeCCCCCHHHHHHHHHHh
Q psy9244          99 LLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        99 vldg~P~~~~q~~~l~~~l  117 (119)
                      ||||||+|.+|++.+++.+
T Consensus        80 vlDg~p~~~~q~~~~~~~~   98 (183)
T TIGR01359        80 LIDGFPRNEENLEAWEKLM   98 (183)
T ss_pred             EEeCCCCCHHHHHHHHHHH
Confidence            9999999999999998765

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02200 adenylate kinase family protein

Probab=99.93  E-value=4.5e-25  Score=154.66  Aligned_cols=104  Identities=38%  Similarity=0.655  Sum_probs=94.6

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP   92 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~   92 (119)
                      ..+.+.+|+|+|+|||||||+|+.|++++|+.|++.++++++.+...++.+..+.+++..|..+|++++..++.+++...
T Consensus        39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~  118 (234)
T PLN02200         39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESS  118 (234)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Confidence            35556789999999999999999999999999999999999999888889999999999999999999999999999865


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          93 ECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        93 ~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      + ..||||||||++.+|+..|++.+
T Consensus       119 ~-~~~~ILDG~Prt~~q~~~l~~~~  142 (234)
T PLN02200        119 D-NNKFLIDGFPRTEENRIAFERII  142 (234)
T ss_pred             C-CCeEEecCCcccHHHHHHHHHHh
Confidence            4 46899999999999999998764

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.93  E-value=8.3e-25  Score=148.43  Aligned_cols=100  Identities=60%  Similarity=1.015  Sum_probs=93.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcE
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGF   98 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~   98 (119)
                      +|+|+|+|||||||+|+.||++||+.++++++++++.....++.+..+..++..|..++++++..++..+|.......+|
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~   80 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGF   80 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCE
Confidence            58999999999999999999999999999999999999888889999999999999999999999999999887666899


Q ss_pred             EEeCCCCCHHHHHHHHHHhh
Q psy9244          99 LLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        99 vldg~P~~~~q~~~l~~~l~  118 (119)
                      ||||||++.+|++.|++.+.
T Consensus        81 vldg~Pr~~~q~~~l~~~~~  100 (194)
T cd01428          81 ILDGFPRTVDQAEALDELLD  100 (194)
T ss_pred             EEeCCCCCHHHHHHHHHHHh
Confidence            99999999999999998763

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK14527 adenylate kinase; Provisional

Probab=99.92  E-value=1.3e-24  Score=148.01  Aligned_cols=102  Identities=46%  Similarity=0.732  Sum_probs=94.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      ++..|+|+|+|||||||+|+.|+++|++.+++.+++++.....+++.+..+..++..|..+|++++..++.+++...++ 
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~-   83 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP-   83 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC-
Confidence            4678999999999999999999999999999999999999988889999999999999999999999999999987665 


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhh
Q psy9244          96 NGFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      .+|||||||++.+|++.|+..++
T Consensus        84 ~~~VlDGfpr~~~q~~~~~~~~~  106 (191)
T PRK14527         84 VRVIFDGFPRTLAQAEALDRLLE  106 (191)
T ss_pred             CcEEEcCCCCCHHHHHHHHHHHH
Confidence            58999999999999999987653

>KOG3078|consensus

Probab=99.89  E-value=4.7e-23  Score=142.97  Aligned_cols=100  Identities=60%  Similarity=1.043  Sum_probs=94.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      ++.+++++|+|||||+|+|..+++.|++.|+++++++++.+.+.++++..+++++.+|.++||+++..++..++....|.
T Consensus        14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~   93 (235)
T KOG3078|consen   14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQ   93 (235)
T ss_pred             cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhccccccc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999888888887789


Q ss_pred             CcEEEeCCCCCHHHHHHHHH
Q psy9244          96 NGFLLDGFPRTVPQAEKVYS  115 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~  115 (119)
                      +||++||||||..|++.+.+
T Consensus        94 ~~~ildg~Prt~~qa~~l~~  113 (235)
T KOG3078|consen   94 KGFILDGFPRTVQQAEELLD  113 (235)
T ss_pred             cccccCCCCcchHHHHHHHH
Confidence            99999999999999988654

>PRK14530 adenylate kinase; Provisional

Probab=99.89  E-value=1.3e-22  Score=140.42  Aligned_cols=96  Identities=42%  Similarity=0.711  Sum_probs=82.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH-----hcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV-----SSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK   91 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~   91 (119)
                      .++|+|+|+|||||||+|+.||++||+.|+++++++++..     ......+. ..+++..|..+|++++..++...+.+
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~   81 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD   81 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            3489999999999999999999999999999999999987     22334443 67788999999999999999988865


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHH
Q psy9244          92 PECQNGFLLDGFPRTVPQAEKVYSL  116 (119)
Q Consensus        92 ~~~~~g~vldg~P~~~~q~~~l~~~  116 (119)
                         ..||||||||++.+|++.|++.
T Consensus        82 ---~~~~IldG~pr~~~q~~~l~~~  103 (215)
T PRK14530         82 ---ADGFVLDGYPRNLEQAEYLESI  103 (215)
T ss_pred             ---CCCEEEcCCCCCHHHHHHHHHh
Confidence               3589999999999999998764

>PLN02842 nucleotide kinase

Probab=99.89  E-value=1.4e-22  Score=153.92  Aligned_cols=96  Identities=46%  Similarity=0.886  Sum_probs=89.9

Q ss_pred             EEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC-CCcEE
Q psy9244          21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC-QNGFL   99 (119)
Q Consensus        21 ~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~-~~g~v   99 (119)
                      +|+|+|||||||+|+.|+++|++.|++++++++.+...+++.|..+++++.+|..+|++++..++.+++.+.++ .+|||
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999988664 57999


Q ss_pred             EeCCCCCHHHHHHHHHH
Q psy9244         100 LDGFPRTVPQAEKVYSL  116 (119)
Q Consensus       100 ldg~P~~~~q~~~l~~~  116 (119)
                      |||||||..|++.|++.
T Consensus        81 LDGfPRt~~Qa~~Le~~   97 (505)
T PLN02842         81 LDGYPRSFAQAQSLEKL   97 (505)
T ss_pred             EeCCCCcHHHHHHHHhc
Confidence            99999999999988753

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.88  E-value=1.3e-21  Score=132.00  Aligned_cols=102  Identities=44%  Similarity=0.719  Sum_probs=89.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC-CC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP-EC   94 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~-~~   94 (119)
                      +...|+|+|+|||||||+|+.|++++|+.+++.+++++......++.+..+...++.|..+|++.+...+.+++... ..
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT   81 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence            34689999999999999999999999999999999999987767778888888999999999999999888888653 34


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          95 QNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        95 ~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      +.+||+||||++..|++.+.+.+
T Consensus        82 ~~~~i~dg~~~~~~q~~~~~~~~  104 (188)
T TIGR01360        82 SKGFLIDGYPREVKQGEEFERRI  104 (188)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcC
Confidence            57999999999999999887643

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK01184 hypothetical protein; Provisional

Probab=99.62  E-value=8.7e-15  Score=98.84  Aligned_cols=94  Identities=22%  Similarity=0.303  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcC-C-----cHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG-S-----NLGKKLKETMDAGKLVSDELVVDLISNNLDK   91 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~-~-----~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~   91 (119)
                      ..|+|+|+|||||||+|+ +++++|+.+++++|++++..... .     ..+....+...   .+..+.+..++...+..
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~i~~   77 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK---ELGMDAVAKRTVPKIRE   77 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH---HHChHHHHHHHHHHHHh
Confidence            478999999999999987 78999999999999999987432 1     23444443332   12233444454555554


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          92 PECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        92 ~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                       .....+|+||+ ++..|.+.+++.+
T Consensus        78 -~~~~~vvidg~-r~~~e~~~~~~~~  101 (184)
T PRK01184         78 -KGDEVVVIDGV-RGDAEVEYFRKEF  101 (184)
T ss_pred             -cCCCcEEEeCC-CCHHHHHHHHHhC
Confidence             23568999999 8999998887765

>PRK08356 hypothetical protein; Provisional

Probab=99.57  E-value=6.4e-15  Score=100.61  Aligned_cols=93  Identities=20%  Similarity=0.396  Sum_probs=67.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcC----C---cHHHH----HHhhhhcCcccCH----HHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG----S---NLGKK----LKETMDAGKLVSD----ELVV   82 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~----~---~~~~~----~~~~~~~g~~~~~----~~~~   82 (119)
                      +.|+|+|+|||||||+|+.|+ ++|+.+++.++.++......    .   ..+..    ...+++.|..+++    +++.
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~   84 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI   84 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence            578999999999999999996 58999999998665433321    1   11111    2455666777774    6666


Q ss_pred             HHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHHH
Q psy9244          83 DLISNNLDKPECQNGFLLDGFPRTVPQAEKVYS  115 (119)
Q Consensus        83 ~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~~  115 (119)
                      +++.+++..  +. .||+||| |+.+|++.|++
T Consensus        85 ~~~~~~~~~--~~-~ividG~-r~~~q~~~l~~  113 (195)
T PRK08356         85 RLAVDKKRN--CK-NIAIDGV-RSRGEVEAIKR  113 (195)
T ss_pred             HHHHHHhcc--CC-eEEEcCc-CCHHHHHHHHh
Confidence            777777743  23 5999999 99999999876

>PRK08118 topology modulation protein; Reviewed

Probab=99.54  E-value=2.8e-14  Score=95.50  Aligned_cols=71  Identities=21%  Similarity=0.308  Sum_probs=52.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      .+|+|+|+|||||||+|+.|++++++.++++|+++...                .+..++++....++.+.+..    .+
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~~----~~   61 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVKE----DE   61 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhcC----CC
Confidence            58999999999999999999999999999999987531                12234455555555554443    36


Q ss_pred             EEEeC-CCCCHH
Q psy9244          98 FLLDG-FPRTVP  108 (119)
Q Consensus        98 ~vldg-~P~~~~  108 (119)
                      ||+|| |+++.+
T Consensus        62 wVidG~~~~~~~   73 (167)
T PRK08118         62 WIIDGNYGGTMD   73 (167)
T ss_pred             EEEeCCcchHHH
Confidence            99999 555553

>PRK03839 putative kinase; Provisional

Probab=99.42  E-value=6.4e-13  Score=89.47  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      +|+|+|+|||||||+|+.||+++++.|+++++++++.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~   38 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK   38 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc
Confidence            6999999999999999999999999999999988653

>PRK06217 hypothetical protein; Validated

Probab=99.40  E-value=6.4e-13  Score=89.89  Aligned_cols=74  Identities=22%  Similarity=0.322  Sum_probs=52.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      .+|+|+|.|||||||+|+.|++++|+.++++|++++...  +.+.          +...+.+.....+.+.+..   ..+
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~~---~~~   66 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT--DPPF----------TTKRPPEERLRLLLEDLRP---REG   66 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC--CCCc----------cccCCHHHHHHHHHHHHhc---CCC
Confidence            579999999999999999999999999999999886431  1110          1123444445555555532   347


Q ss_pred             EEEeCCCCC
Q psy9244          98 FLLDGFPRT  106 (119)
Q Consensus        98 ~vldg~P~~  106 (119)
                      |||||++..
T Consensus        67 ~vi~G~~~~   75 (183)
T PRK06217         67 WVLSGSALG   75 (183)
T ss_pred             EEEEccHHH
Confidence            999999754

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.37  E-value=6.9e-13  Score=83.62  Aligned_cols=34  Identities=38%  Similarity=0.574  Sum_probs=32.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML   52 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~   52 (119)
                      +|+|.|+|||||||+|+.|++++|+.++++|+++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~   34 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI   34 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence            5899999999999999999999999999999954

...

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.36  E-value=3e-12  Score=92.32  Aligned_cols=95  Identities=18%  Similarity=0.171  Sum_probs=60.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      +..|+++|+|||||||+|+.|++++ ++.+++.|++.+....... .+..  .+...+.....+.....+...+.   .+
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~---~g   75 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGE-WGEY--KFTKEKEDLVTKAQEAAALAALK---SG   75 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCc-cccc--ccChHHHHHHHHHHHHHHHHHHH---cC
Confidence            3578899999999999999999999 8999999886554432211 1100  00000111112233334444443   24


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh
Q psy9244          96 NGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      ..+|+|+++.+..+.+.+.+.+
T Consensus        76 ~~vIid~~~~~~~~~~~~~~la   97 (300)
T PHA02530         76 KSVIISDTNLNPERRRKWKELA   97 (300)
T ss_pred             CeEEEeCCCCCHHHHHHHHHHH
Confidence            6799999999999998887654

>PRK13949 shikimate kinase; Provisional

Probab=99.34  E-value=1.1e-11  Score=83.19  Aligned_cols=89  Identities=17%  Similarity=0.296  Sum_probs=60.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      .+|+|+|+|||||||+++.||+.+++.++++|+++.+....  ......+   ..|.....+....++.+ +...   .+
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~--~~~~~~~---~~g~~~fr~~e~~~l~~-l~~~---~~   72 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHK--TVGDIFA---ERGEAVFRELERNMLHE-VAEF---ED   72 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCc--cHHHHHH---HhCHHHHHHHHHHHHHH-HHhC---CC
Confidence            47999999999999999999999999999999988766432  2222222   22444444444455555 4322   35


Q ss_pred             EEE-e--CCCCCHHHHHHHHH
Q psy9244          98 FLL-D--GFPRTVPQAEKVYS  115 (119)
Q Consensus        98 ~vl-d--g~P~~~~q~~~l~~  115 (119)
                      ||+ +  |+|.+.++.+.|.+
T Consensus        73 ~vis~Ggg~~~~~~~~~~l~~   93 (169)
T PRK13949         73 VVISTGGGAPCFFDNMELMNA   93 (169)
T ss_pred             EEEEcCCcccCCHHHHHHHHh
Confidence            777 3  57777777777654

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.33  E-value=8.8e-12  Score=82.38  Aligned_cols=43  Identities=28%  Similarity=0.366  Sum_probs=39.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGS   60 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~   60 (119)
                      ++|.|.|+|||||||+|+.||+++|+.++|.+.++++..++..
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~g   43 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERG   43 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcC
Confidence            3688999999999999999999999999999999999987543

>PRK07261 topology modulation protein; Provisional

Probab=99.28  E-value=8.3e-12  Score=83.79  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML   52 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~   52 (119)
                      .+|+|+|+|||||||+|+.|++.+++.+++.|++.
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~   35 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH   35 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence            47999999999999999999999999999998764

>PRK04182 cytidylate kinase; Provisional

Probab=99.23  E-value=4.7e-11  Score=79.81  Aligned_cols=41  Identities=39%  Similarity=0.622  Sum_probs=37.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS   58 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~   58 (119)
                      ++|+|+|.+||||||+|+.||+++|+.+++.+++++.....
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~   41 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKE   41 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHH
Confidence            36899999999999999999999999999999988887643

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.22  E-value=1.7e-11  Score=83.95  Aligned_cols=54  Identities=22%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD   71 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~   71 (119)
                      .+|.|+|++||||||+|+.|++.+|+.++|.|++.++....+++.+..+.+.+.
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg   55 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYG   55 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhC
Confidence            479999999999999999999999999999999999999888888887776664

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.20  E-value=1.1e-10  Score=77.45  Aligned_cols=40  Identities=38%  Similarity=0.613  Sum_probs=36.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      +.|+|+|++||||||+|+.|++++|+.+++.+++++....
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~   40 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA   40 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH
Confidence            3689999999999999999999999999999998887654

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>KOG3347|consensus

Probab=99.19  E-value=1.6e-11  Score=80.30  Aligned_cols=42  Identities=26%  Similarity=0.409  Sum_probs=38.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      +..++|+|+|-||+||||+|++||+.+++.+|.+++++++.-
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~   46 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN   46 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc
Confidence            455789999999999999999999999999999999998753

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.18  E-value=5.4e-11  Score=76.83  Aligned_cols=89  Identities=24%  Similarity=0.291  Sum_probs=56.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcH----HHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNL----GKKLKETMDAGKLVSDELVVDLISNNLDKPEC   94 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~   94 (119)
                      .|+++|+|||||||+|+.+++.++..+++.|++.........+.    .. ...       .-.+.+...+...+..   
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~l~~---   69 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIE-AEE-------RAYQILNAAIRKALRN---   69 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHH-HHH-------HHHHHHHHHHHHHHHT---
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHH-HHH-------HHHHHHHHHHHHHHHc---
Confidence            37899999999999999999999999999999877665422110    00 000       0122344455555543   


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhh
Q psy9244          95 QNGFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        95 ~~g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      +..+|+|+.-.+..+.+.+.+.++
T Consensus        70 g~~~vvd~~~~~~~~r~~~~~~~~   93 (143)
T PF13671_consen   70 GNSVVVDNTNLSREERARLRELAR   93 (143)
T ss_dssp             T-EEEEESS--SHHHHHHHHHHHH
T ss_pred             CCCceeccCcCCHHHHHHHHHHHH
Confidence            346888876566677666666553

...

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.17  E-value=3.7e-11  Score=82.43  Aligned_cols=43  Identities=23%  Similarity=0.337  Sum_probs=38.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS   58 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~   58 (119)
                      .+..|+|.|.|||||||+|+.|++++++.++..+|++++.+..
T Consensus         2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~   44 (197)
T PRK12339          2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRP   44 (197)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHH
Confidence            3568999999999999999999999999999999999998764

>PRK04040 adenylate kinase; Provisional

Probab=99.17  E-value=1.1e-10  Score=79.56  Aligned_cols=43  Identities=21%  Similarity=0.181  Sum_probs=38.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHHHHHHhcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAEVSSG   59 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~~~~~~~~   59 (119)
                      +..|+|+|.|||||||+++.|++++  ++.+++.++++.+.....
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~   46 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEE   46 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHc
Confidence            4689999999999999999999999  899999999988876543

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.14  E-value=7.8e-11  Score=79.50  Aligned_cols=52  Identities=21%  Similarity=0.221  Sum_probs=46.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD   71 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~   71 (119)
                      .|.|+|++||||||+++.|++ +|+.++++|++.++....+......+.+.+.
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg   52 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFG   52 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcC
Confidence            488999999999999999998 9999999999999999887777777776654

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.12  E-value=1.4e-10  Score=77.60  Aligned_cols=41  Identities=24%  Similarity=0.364  Sum_probs=37.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      ..+|+++|++||||||+++.||+.+++.++|+|.++.+...
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g   42 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG   42 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC
Confidence            35799999999999999999999999999999999988764

>PRK13948 shikimate kinase; Provisional

Probab=99.12  E-value=4.7e-10  Score=76.12  Aligned_cols=41  Identities=15%  Similarity=0.129  Sum_probs=37.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .+..|+|+|.+||||||+++.||+++|+.++++|.++++..
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~   49 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT   49 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH
Confidence            45789999999999999999999999999999999887765

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.12  E-value=9.9e-11  Score=80.00  Aligned_cols=54  Identities=26%  Similarity=0.253  Sum_probs=47.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD   71 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~   71 (119)
                      +..|.|+|++||||||+++.|++ +|+.+++.|++.++....+++....+.+.+.
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg   55 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFG   55 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhC
Confidence            35799999999999999999998 9999999999999998877777777766554

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=99.11  E-value=4.5e-10  Score=77.25  Aligned_cols=54  Identities=26%  Similarity=0.291  Sum_probs=46.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD   71 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~   71 (119)
                      +..|.|+|.|||||||+|+.+++ +|+.++++|+++++....+++....+.+.+.
T Consensus         2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG   55 (201)
T COG0237           2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFG   55 (201)
T ss_pred             ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcC
Confidence            46799999999999999999998 9999999999999998877766666655443

>PRK00625 shikimate kinase; Provisional

Probab=99.11  E-value=9.8e-11  Score=78.83  Aligned_cols=39  Identities=23%  Similarity=0.330  Sum_probs=36.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ++|+|+|.|||||||+++.||+++++.++++|+++++..
T Consensus         1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~   39 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY   39 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence            369999999999999999999999999999999988754

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=99.09  E-value=1e-10  Score=75.74  Aligned_cols=35  Identities=43%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLR   53 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~   53 (119)
                      .|+|+|+|||||||+|+.|++++|+.+++.+.+..
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~   35 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRT   35 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCH
Confidence            47899999999999999999999999999985433

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=99.07  E-value=5.2e-10  Score=76.89  Aligned_cols=55  Identities=25%  Similarity=0.262  Sum_probs=48.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG   73 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g   73 (119)
                      ..|.|+|++||||||+++.|+. +|+.+++.|++.++....++.....+.+.+..+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~   56 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDD   56 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            4689999999999999999987 899999999999999988887777777766554

>PRK13947 shikimate kinase; Provisional

Probab=99.07  E-value=2e-09  Score=71.61  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      .+|+|+|+|||||||+|+.||+++|+.+++.|.+++..
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~   39 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKM   39 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhh
Confidence            36999999999999999999999999999999987776

>PRK06762 hypothetical protein; Provisional

Probab=99.04  E-value=3.9e-09  Score=70.03  Aligned_cols=39  Identities=26%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~~~~   55 (119)
                      +..|+|+|+|||||||+|+.|++.+  ++.+++.|.+.+..
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l   42 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM   42 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence            5678999999999999999999998  67778877766544

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.04  E-value=3.6e-10  Score=75.04  Aligned_cols=41  Identities=32%  Similarity=0.484  Sum_probs=36.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .+..|+|+|+|||||||+|+.||+++|+.+++.|++++...
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~   43 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA   43 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence            35689999999999999999999999999999999887654

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.02  E-value=3.4e-09  Score=69.18  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=35.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      +|+|+|+|||||||+|+.|++++|+.+++.++++.....
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~   39 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG   39 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC
Confidence            489999999999999999999999999999998877653

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR00152 dephospho-CoA kinase

Probab=98.99  E-value=9.5e-10  Score=74.60  Aligned_cols=52  Identities=29%  Similarity=0.311  Sum_probs=44.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM   70 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~   70 (119)
                      +|+|+|.+||||||+++.|++..++.+++.|++.++....+.+....+.+.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~f   52 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHF   52 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHH
Confidence            4899999999999999999998889999999999999987776666555444

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK13946 shikimate kinase; Provisional

Probab=98.98  E-value=5.4e-09  Score=70.79  Aligned_cols=43  Identities=19%  Similarity=0.211  Sum_probs=37.8

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      +.....|+|+|.+||||||+++.||+++|+.+++.|.++....
T Consensus         7 ~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~   49 (184)
T PRK13946          7 ALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA   49 (184)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh
Confidence            3355689999999999999999999999999999998776664

>PLN02422 dephospho-CoA kinase

Probab=98.98  E-value=6.8e-10  Score=77.88  Aligned_cols=51  Identities=24%  Similarity=0.229  Sum_probs=44.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM   70 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~   70 (119)
                      .|.|+|++||||||+++.|+ ++|+.++|.|++.++.+..++.....+.+.+
T Consensus         3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~F   53 (232)
T PLN02422          3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAF   53 (232)
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHh
Confidence            68999999999999999998 6899999999999999987776666665544

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.97  E-value=4.4e-09  Score=74.81  Aligned_cols=28  Identities=32%  Similarity=0.564  Sum_probs=24.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +.....++|.||||+||||+|+.+|+.+
T Consensus        39 ~~~~~~vll~GppGtGKTtlA~~ia~~l   66 (261)
T TIGR02881        39 SKQVLHMIFKGNPGTGKTTVARILGKLF   66 (261)
T ss_pred             CCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence            4455789999999999999999999864

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK08233 hypothetical protein; Provisional

Probab=98.95  E-value=8.7e-10  Score=73.83  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      +..|+|.|+|||||||+|+.|++.++
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            57889999999999999999999986

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.94  E-value=1.5e-09  Score=73.51  Aligned_cols=53  Identities=26%  Similarity=0.267  Sum_probs=45.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD   71 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~   71 (119)
                      +.|.|+|+.||||||+++.|++ +|+.++++|++.++.+..+.+....+.+.+.
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG   53 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFG   53 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHG
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcC
Confidence            3689999999999999999988 9999999999999999888877777765544

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.94  E-value=5.1e-09  Score=74.03  Aligned_cols=53  Identities=13%  Similarity=0.138  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM   70 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~   70 (119)
                      ..|.|+|+.||||||+++.|.+++|+.+++.|.+.++....+....+.+.+.+
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~F   54 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARW   54 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHh
Confidence            47899999999999999999998999999999999999887776666665544

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.93  E-value=6.2e-09  Score=81.01  Aligned_cols=44  Identities=16%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .|.+..+|+|+|.|||||||+++.||+++|+.++++|+.+.+..
T Consensus         2 ~~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~   45 (542)
T PRK14021          2 KPTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI   45 (542)
T ss_pred             CCCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH
Confidence            35667889999999999999999999999999999999888775

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=98.92  E-value=2.2e-09  Score=74.02  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=42.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLK   67 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~   67 (119)
                      .+..|.|+|++||||||+++.|++++|+.+++.|.+.++.... ......+.
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~   55 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIA   55 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHH
Confidence            3568999999999999999999999999999999999998764 33333343

>TIGR00017 cmk cytidylate kinase

Probab=98.90  E-value=4.3e-09  Score=73.23  Aligned_cols=38  Identities=37%  Similarity=0.468  Sum_probs=35.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      +.|.|.|++||||||+++.|++++++.+++.+++.+..
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~   40 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI   40 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence            57999999999999999999999999999999887665

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=98.89  E-value=7.9e-09  Score=67.42  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=32.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA   54 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~   54 (119)
                      |+|+|+|||||||+|+.|++.++..+++.|++...
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~   36 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP   36 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence            78999999999999999999999999999887654

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.89  E-value=2.3e-09  Score=71.69  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=34.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ++|+|+|.||+||||+|+.|+ ++|+.++++.+++.+.-
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~   38 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENG   38 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcC
Confidence            479999999999999999999 99999999999887753

>CHL00181 cbbX CbbX; Provisional

Probab=98.89  E-value=8.4e-09  Score=74.52  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=33.8

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc---C------ccccchhHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---C------VCHLSTGDMLRAEVS   57 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~---~------~~~is~~~l~~~~~~   57 (119)
                      +..+..++|.|+||+||||+|+.+++.+   |      +..++.++++.....
T Consensus        56 ~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g  108 (287)
T CHL00181         56 SNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG  108 (287)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence            4456789999999999999999998864   1      355677777766543

>PLN02199 shikimate kinase

Probab=98.87  E-value=1.4e-08  Score=73.35  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=37.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..+|+|+|.+||||||+++.||+.+|+.++++|.++++..
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~  141 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM  141 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHh
Confidence            4589999999999999999999999999999999998874

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.86  E-value=3.7e-09  Score=70.49  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .+|+|+|.+||||||+|+.||+++|+.+++.|.++....
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~   41 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS   41 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh
Confidence            468999999999999999999999999999998877654

>PRK06547 hypothetical protein; Provisional

Probab=98.84  E-value=5.1e-09  Score=70.45  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=36.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA   54 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~   54 (119)
                      +..+..|+|.|++||||||+|+.|++.+++.+++.|++...
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~   52 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPG   52 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecc
Confidence            45567889999999999999999999999999999987643

>PRK12338 hypothetical protein; Provisional

Probab=98.82  E-value=2.4e-08  Score=72.93  Aligned_cols=42  Identities=26%  Similarity=0.320  Sum_probs=37.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      ++..|+|.|+|||||||+|+.||+++|+.++..+|.+++...
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~   44 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVR   44 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHc
Confidence            357899999999999999999999999999977888888664

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.82  E-value=1.5e-08  Score=76.13  Aligned_cols=52  Identities=23%  Similarity=0.229  Sum_probs=43.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM   70 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~   70 (119)
                      .+|.|+|++||||||+|+.|++ +|+.++++|++.++....+......+.+.+
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~f   53 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAF   53 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHh
Confidence            4799999999999999999987 899999999999998887665555554443

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.81  E-value=1.1e-08  Score=70.67  Aligned_cols=50  Identities=14%  Similarity=0.111  Sum_probs=40.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKL   66 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~   66 (119)
                      .+..|.|+|++||||||+++.|++ +|+.+++.|.+.++....+......+
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~   53 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGI   53 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHH
Confidence            456789999999999999999986 89999999999988876554443333

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.79  E-value=2.8e-08  Score=76.53  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=35.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      ++|+|+|+|||||||+++.||+++|+.++++|+++.+.
T Consensus         1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~   38 (488)
T PRK13951          1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR   38 (488)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH
Confidence            36999999999999999999999999999999988774

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.79  E-value=2.1e-08  Score=77.34  Aligned_cols=41  Identities=37%  Similarity=0.417  Sum_probs=37.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      .++..|.|.|++||||||+|+.||+++|+.+++.|++.+..
T Consensus       282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~  322 (512)
T PRK13477        282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV  322 (512)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence            35678999999999999999999999999999999998885

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.78  E-value=1e-08  Score=70.33  Aligned_cols=50  Identities=16%  Similarity=0.199  Sum_probs=42.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM   70 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~   70 (119)
                      |.|+|++||||||+++.|++ +|+.+++.|++.++....+....+.+.+.+
T Consensus         2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~f   51 (196)
T PRK14732          2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLL   51 (196)
T ss_pred             EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHh
Confidence            78999999999999999965 799999999999998887776666665544

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.78  E-value=4.6e-08  Score=70.60  Aligned_cols=94  Identities=18%  Similarity=0.289  Sum_probs=52.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc---------CccccchhHHHHHHHhcCCc-HHHHHHhhhhcCcccCHHH-----
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY---------CVCHLSTGDMLRAEVSSGSN-LGKKLKETMDAGKLVSDEL-----   80 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~---------~~~~is~~~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~-----   80 (119)
                      ....++|+|+||+||||+|+.+++.+         .+..++.++++......... ....+++ ...|.++.|++     
T Consensus        57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~-a~~gvL~iDEi~~L~~  135 (284)
T TIGR02880        57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKR-AMGGVLFIDEAYYLYR  135 (284)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHH-ccCcEEEEechhhhcc
Confidence            34579999999999999998888754         24456666776544322111 1112222 12244444432     


Q ss_pred             ----------HHHHHHHhhcCCCCCCcEEEeCCCCCHHHH
Q psy9244          81 ----------VVDLISNNLDKPECQNGFLLDGFPRTVPQA  110 (119)
Q Consensus        81 ----------~~~ll~~~l~~~~~~~g~vldg~P~~~~q~  110 (119)
                                +...+...|+.......+|+.|++...+..
T Consensus       136 ~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~  175 (284)
T TIGR02880       136 PDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSF  175 (284)
T ss_pred             CCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence                      123444555543333467778887655544

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.78  E-value=1.1e-08  Score=58.79  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .|+|+|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999984

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK13974 thymidylate kinase; Provisional

Probab=98.77  E-value=1.5e-08  Score=70.07  Aligned_cols=100  Identities=21%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHHhcCCcHHHHHHhhhhc--CcccCHHHHHHHH--HHhh-
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEVSSGSNLGKKLKETMDA--GKLVSDELVVDLI--SNNL-   89 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~ll--~~~l-   89 (119)
                      +..|+|.|++||||||+++.|++.+...-...  .+.+......+++.|+.+++++..  |...++.....++  ..|. 
T Consensus         3 g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~   82 (212)
T PRK13974          3 GKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQ   82 (212)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHH
Confidence            56899999999999999999998774211000  011111112356788889888853  3334444333322  2221 


Q ss_pred             ------cCCCCCCcEEE-----------eCCCCCHHH--HHHHHHH
Q psy9244          90 ------DKPECQNGFLL-----------DGFPRTVPQ--AEKVYSL  116 (119)
Q Consensus        90 ------~~~~~~~g~vl-----------dg~P~~~~q--~~~l~~~  116 (119)
                            ...-....+||           +|||++.++  +..+++.
T Consensus        83 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~  128 (212)
T PRK13974         83 HVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESI  128 (212)
T ss_pred             HHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHH
Confidence                  11101223777           899987554  6666553

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=98.76  E-value=7.9e-08  Score=67.89  Aligned_cols=32  Identities=44%  Similarity=0.463  Sum_probs=25.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc-----CccccchhHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDM   51 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l   51 (119)
                      |+|+|.|||||||+|+.|++.+     ++.+++.+.+
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l   38 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI   38 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence            7899999999999999999876     2455665443

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.75  E-value=1.1e-08  Score=68.70  Aligned_cols=40  Identities=23%  Similarity=0.362  Sum_probs=35.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..+|+|+|++||||||+++.|++.+++.+++.|..+....
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~   43 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT   43 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh
Confidence            4579999999999999999999999999999987665443

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.72  E-value=2.1e-08  Score=69.26  Aligned_cols=39  Identities=41%  Similarity=0.538  Sum_probs=36.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ++|.|-||.||||||+|+.||+++|+.|++.+.+.|...
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a   43 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA   43 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence            688999999999999999999999999999999988755

>PRK13973 thymidylate kinase; Provisional

Probab=98.72  E-value=5e-08  Score=67.53  Aligned_cols=41  Identities=29%  Similarity=0.340  Sum_probs=33.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc---Cccccch--------hHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY---CVCHLST--------GDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~---~~~~is~--------~~l~~~~~~   57 (119)
                      +.-|+|-|..||||||+++.|++.+   |+.++.+        ++++++.+.
T Consensus         3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~   54 (213)
T PRK13973          3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLL   54 (213)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHc
Confidence            4568899999999999999999998   7777655        777777664

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.71  E-value=2.3e-08  Score=67.18  Aligned_cols=38  Identities=24%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRAE   55 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~~   55 (119)
                      .+++|+|+||||||++|..++.+++  +.|++......++
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e   41 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDE   41 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHH
Confidence            4689999999999999999999876  5677665444443

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=98.71  E-value=8.7e-09  Score=68.15  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=30.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML   52 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~~~~is~~~l~   52 (119)
                      |+|+|++||||||+|+.|++.++..+++.|++.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~   33 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH   33 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence            578999999999999999999999999998874

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.70  E-value=2.2e-08  Score=70.02  Aligned_cols=39  Identities=46%  Similarity=0.617  Sum_probs=35.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      ..+|.|.|++||||||+|+.|++++|+.+++.+.+.+..
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~   42 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV   42 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence            368999999999999999999999999999999987763

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.70  E-value=2.7e-08  Score=72.50  Aligned_cols=45  Identities=20%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..+.+..+|+|+|+|||||||+++.|++++|+.++++|..+.+..
T Consensus       128 ~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~  172 (309)
T PRK08154        128 RRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA  172 (309)
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh
Confidence            456677899999999999999999999999999999998776553

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=98.68  E-value=1.1e-07  Score=75.65  Aligned_cols=39  Identities=31%  Similarity=0.341  Sum_probs=36.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      .++|.|.||+||||||+|+.||+++|+.|++.+++.+..
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~  480 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT  480 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence            558999999999999999999999999999999999886

>KOG3354|consensus

Probab=98.67  E-value=8.5e-08  Score=63.37  Aligned_cols=38  Identities=18%  Similarity=0.315  Sum_probs=34.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA   54 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~   54 (119)
                      .-.|+|+|..||||||+++.|++++++.+++.||+--.
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~   49 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPP   49 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCH
Confidence            34789999999999999999999999999999987543

>PRK13975 thymidylate kinase; Provisional

Probab=98.66  E-value=1.5e-07  Score=63.91  Aligned_cols=26  Identities=42%  Similarity=0.457  Sum_probs=24.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..|+|.|++||||||+++.|+++++.
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            57899999999999999999999985

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.65  E-value=4.3e-08  Score=61.75  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=21.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~   41 (119)
                      |+|.|+|||||||+|+.|++++
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999987

...

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.65  E-value=3e-07  Score=69.52  Aligned_cols=94  Identities=27%  Similarity=0.397  Sum_probs=55.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc----C--ccccchhHHHHHHHhcCCcHHHHHHhhhhc-Ccc-cCHHHHHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLSTGDMLRAEVSSGSNLGKKLKETMDA-GKL-VSDELVVDLISN   87 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~~~l~~~~~~~~~~~~~~~~~~~~~-g~~-~~~~~~~~ll~~   87 (119)
                      ++..++|+|++||||||++..||..+    |  +.+++.|. .+....      ..++.+.+. |.. ....... -+.+
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt-~R~aA~------eQLk~yAe~lgvp~~~~~~~~-~l~~  293 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN-YRIAAI------EQLKRYADTMGMPFYPVKDIK-KFKE  293 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc-hhhhHH------HHHHHHHHhcCCCeeehHHHH-HHHH
Confidence            35678999999999999999999754    2  33455443 333221      123333222 211 1111122 3344


Q ss_pred             hhcCCCCCCcEEEe--CCC-CCHHHHHHHHHHhh
Q psy9244          88 NLDKPECQNGFLLD--GFP-RTVPQAEKVYSLMM  118 (119)
Q Consensus        88 ~l~~~~~~~g~vld--g~P-~~~~q~~~l~~~l~  118 (119)
                      .+.. .....+|||  |++ ++..|++.|.++++
T Consensus       294 ~l~~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~  326 (432)
T PRK12724        294 TLAR-DGSELILIDTAGYSHRNLEQLERMQSFYS  326 (432)
T ss_pred             HHHh-CCCCEEEEeCCCCCccCHHHHHHHHHHHH
Confidence            4443 234579999  875 88999999988764

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=98.63  E-value=3.6e-08  Score=67.52  Aligned_cols=40  Identities=23%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLRA   54 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~~   54 (119)
                      ..|..+++.|+|||||||++..+...+   ++.+|+.|++...
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~   55 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF   55 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence            566778888999999999999999886   7888999886443

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.62  E-value=3e-08  Score=62.68  Aligned_cols=33  Identities=30%  Similarity=0.541  Sum_probs=27.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDML   52 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~   52 (119)
                      |+|+||||+|||++++.+|+.++..+  ++..++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~   35 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI   35 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence            68999999999999999999988655  5666665

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PLN02165 adenylate isopentenyltransferase

Probab=98.61  E-value=6.4e-08  Score=71.07  Aligned_cols=40  Identities=18%  Similarity=0.336  Sum_probs=35.3

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      ....++..|+|+||+|||||++|..||+.++..++|.|.+
T Consensus        38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         38 EQNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             ccCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            3455566899999999999999999999999999999876

>smart00072 GuKc Guanylate kinase homologues

Probab=98.60  E-value=1.5e-08  Score=68.64  Aligned_cols=92  Identities=22%  Similarity=0.239  Sum_probs=51.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc----CccccchhHHHHHHHhcCCc----HHHHHHhhhhcCcccCHHH--------H
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY----CVCHLSTGDMLRAEVSSGSN----LGKKLKETMDAGKLVSDEL--------V   81 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~----~~~~is~~~l~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~--------~   81 (119)
                      ..|+|+||+||||+|+++.|.+.+    ...+.....-.+.....+..    ..+.+....+.|..+....        .
T Consensus         3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~   82 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS   82 (184)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence            468999999999999999999875    22222222222221111111    1244555555555544321        1


Q ss_pred             HHHHHHhhcCCCCCCcEEEeCCCCCHHHHHH
Q psy9244          82 VDLISNNLDKPECQNGFLLDGFPRTVPQAEK  112 (119)
Q Consensus        82 ~~ll~~~l~~~~~~~g~vldg~P~~~~q~~~  112 (119)
                      ...+...+..   ++.+|+|+.|+...+++.
T Consensus        83 ~~~i~~~~~~---~~~~ild~~~~~~~~l~~  110 (184)
T smart00072       83 KETIRQVAEQ---GKHCLLDIDPQGVKQLRK  110 (184)
T ss_pred             HHHHHHHHHc---CCeEEEEECHHHHHHHHH
Confidence            2233444432   457888888777777654

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.60  E-value=7.8e-07  Score=69.05  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=34.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      +..+..|+++|.|||||||+|+.+++..++.+++.|++
T Consensus       366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l  403 (526)
T TIGR01663       366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL  403 (526)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence            35667889999999999999999999999999999876

Note that the EC number for the kinase function is: 2.7.1.78

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.60  E-value=7e-08  Score=64.75  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc--cccchhHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV--CHLSTGDMLRA   54 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~--~~is~~~l~~~   54 (119)
                      +..|+++|+|||||||+|+.|++.++.  .+++.|++...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~   41 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA   41 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence            457999999999999999999998754  45677776654

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>KOG3220|consensus

Probab=98.59  E-value=1.1e-07  Score=65.11  Aligned_cols=59  Identities=19%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS   77 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~   77 (119)
                      ..|.++|..+|||||+++.+- .+|+.+|+.|.+.|+....+++-...+.+.+...-+.+
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~   60 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLE   60 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeecc
Confidence            467899999999999999985 89999999999999999999998888887776554333

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=98.59  E-value=6.1e-08  Score=67.06  Aligned_cols=85  Identities=21%  Similarity=0.301  Sum_probs=51.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH-HHhcCC--cHHHH---------HHhhhhcCcccCHHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA-EVSSGS--NLGKK---------LKETMDAGKLVSDELVVDLI   85 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~-~~~~~~--~~~~~---------~~~~~~~g~~~~~~~~~~ll   85 (119)
                      ..++|.||+|+|||.+|-.+|+++|..+|+.|.+-.- .+...+  +....         -...+..|. ++.+-..+.+
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~L   80 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHERL   80 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHHH
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHHH
Confidence            3578999999999999999999999999999875322 221111  11000         122344455 5666677777


Q ss_pred             HHhhcCCCCCCcEEEeCC
Q psy9244          86 SNNLDKPECQNGFLLDGF  103 (119)
Q Consensus        86 ~~~l~~~~~~~g~vldg~  103 (119)
                      ..++.+.....++||+|=
T Consensus        81 i~~v~~~~~~~~~IlEGG   98 (233)
T PF01745_consen   81 ISEVNSYSAHGGLILEGG   98 (233)
T ss_dssp             HHHHHTTTTSSEEEEEE-
T ss_pred             HHHHHhccccCceEEeCc
Confidence            778888777789999883

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.58  E-value=4.9e-07  Score=62.49  Aligned_cols=24  Identities=50%  Similarity=0.520  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +-|+++|+|||||||+|+.|++.+
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L   25 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKEL   25 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHH
Confidence            458999999999999999999865

>PHA00729 NTP-binding motif containing protein

Probab=98.58  E-value=2.1e-07  Score=65.05  Aligned_cols=25  Identities=40%  Similarity=0.541  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .+|+|+|+||+||||+|.+|+++.+
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999998764

>PRK06696 uridine kinase; Validated

Probab=98.57  E-value=5.4e-08  Score=67.77  Aligned_cols=41  Identities=22%  Similarity=0.153  Sum_probs=33.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc---Cc--cccchhHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---CV--CHLSTGDMLRA   54 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~---~~--~~is~~~l~~~   54 (119)
                      +..+..|.|.|++||||||+|+.|++.+   |.  .++++|++...
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~   64 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP   64 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence            4567899999999999999999999988   43  44567777643

>PRK08181 transposase; Validated

Probab=98.56  E-value=4.3e-07  Score=65.17  Aligned_cols=79  Identities=24%  Similarity=0.396  Sum_probs=51.4

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHHHHhcC--CcHHHHHHhhhhcCcccCHH------
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVSSG--SNLGKKLKETMDAGKLVSDE------   79 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~~------   79 (119)
                      |.....+++|+|+||+|||++|.+++..     +.+.++++.+++.......  ....+.+..+.+...++.||      
T Consensus       102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~  181 (269)
T PRK08181        102 WLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTK  181 (269)
T ss_pred             HHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccC
Confidence            4556678999999999999999999853     3477889999888765422  22333344433333333333      


Q ss_pred             ------HHHHHHHHhhcC
Q psy9244          80 ------LVVDLISNNLDK   91 (119)
Q Consensus        80 ------~~~~ll~~~l~~   91 (119)
                            .+.+++..+.+.
T Consensus       182 ~~~~~~~Lf~lin~R~~~  199 (269)
T PRK08181        182 DQAETSVLFELISARYER  199 (269)
T ss_pred             CHHHHHHHHHHHHHHHhC
Confidence                  356666666553

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=4.3e-07  Score=67.04  Aligned_cols=52  Identities=23%  Similarity=0.432  Sum_probs=42.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhcCCcHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSSGSNLGKKL   66 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~~~~~~~~~   66 (119)
                      +.|.-|++.||||+|||-+|++.|.+.++.+|  .-++|++.++.++..+-..+
T Consensus       183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRel  236 (406)
T COG1222         183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVREL  236 (406)
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHH
Confidence            34556999999999999999999999987776  55789999998766554433

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.54  E-value=5.6e-08  Score=77.85  Aligned_cols=39  Identities=31%  Similarity=0.416  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .+|.|.|||||||||+|+.||+++|+.|++.+.+.+...
T Consensus         2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~   40 (712)
T PRK09518          2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACA   40 (712)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHH
Confidence            378999999999999999999999999999999888754

>PLN02748 tRNA dimethylallyltransferase

Probab=98.53  E-value=1.7e-07  Score=71.72  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=38.2

Q ss_pred             CCCCCCC----CCCCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244           3 PLAYPLP----KESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus         3 ~~~~~~~----~~~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      +||.|..    ++.-..++..|+|+||+|||||++|..||++++..+|+.|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds   55 (468)
T PLN02748          4 LNPSPGAGEEGSPKQKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS   55 (468)
T ss_pred             CCCCCCCCCCCCcccCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence            4554443    33444556689999999999999999999999999999975

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.52  E-value=2.8e-07  Score=60.95  Aligned_cols=81  Identities=21%  Similarity=0.236  Sum_probs=49.1

Q ss_pred             CCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCcEEEe--CC
Q psy9244          26 PGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLD--GF  103 (119)
Q Consensus        26 pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g~vld--g~  103 (119)
                      |||||||+++.||+.+++.++++|+++.+...  ....+.+..   .|...-.+.-.+++.+.+...   ..+|-.  |.
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g--~si~~i~~~---~G~~~fr~~E~~~l~~l~~~~---~~VIa~GGG~   72 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG--MSISEIFAE---EGEEAFRELESEALRELLKEN---NCVIACGGGI   72 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT--SHHHHHHHH---HHHHHHHHHHHHHHHHHHCSS---SEEEEE-TTG
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC--CcHHHHHHc---CChHHHHHHHHHHHHHHhccC---cEEEeCCCCC
Confidence            79999999999999999999999999877754  223332222   122222334444555555443   233323  25


Q ss_pred             CCCHHHHHHHH
Q psy9244         104 PRTVPQAEKVY  114 (119)
Q Consensus       104 P~~~~q~~~l~  114 (119)
                      +.+.+..+.|.
T Consensus        73 ~~~~~~~~~L~   83 (158)
T PF01202_consen   73 VLKEENRELLK   83 (158)
T ss_dssp             GGSHHHHHHHH
T ss_pred             cCcHHHHHHHH
Confidence            55555555544

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.51  E-value=7.9e-08  Score=65.50  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=32.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAE   55 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~   55 (119)
                      .|.|.|+|||||||+|+.|++.+ ++.++++|++....
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~   38 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPE   38 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCc
Confidence            37899999999999999999998 78899999877543

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=98.51  E-value=1.4e-07  Score=63.17  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDM   51 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l   51 (119)
                      .++..|+|+|++||||||+|+.|++++.     ..+++.+.+
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~   46 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL   46 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence            3456899999999999999999998874     566665443

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.51  E-value=3.6e-07  Score=63.40  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=33.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcc---ccchhHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC---HLSTGDMLRA   54 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~---~is~~~l~~~   54 (119)
                      .+...|.|.|++||||||+|+.|++.++..   .|+.|+....
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~   48 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD   48 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence            456788999999999999999999999744   6777776653

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.49  E-value=1.2e-07  Score=65.13  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLR   53 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~   53 (119)
                      +.++..|.|+|++||||||+++.|++.+   .+.+++.|+...
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~   45 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK   45 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence            3567899999999999999999999987   356677777543

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.48  E-value=1.9e-07  Score=63.08  Aligned_cols=46  Identities=35%  Similarity=0.557  Sum_probs=35.1

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~~~~   57 (119)
                      .|-.....++|.|++|+|||++|.+++.+     +.+.+++..+++.....
T Consensus        42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~   92 (178)
T PF01695_consen   42 EFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ   92 (178)
T ss_dssp             -S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred             CCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence            45566789999999999999999999864     45788999999988764

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK06526 transposase; Provisional

Probab=98.46  E-value=4e-07  Score=64.81  Aligned_cols=46  Identities=22%  Similarity=0.304  Sum_probs=37.0

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~~~~   57 (119)
                      .|-....+++|+||||+|||++|..|+..     +.+.+++..+++.+...
T Consensus        93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~  143 (254)
T PRK06526         93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAA  143 (254)
T ss_pred             chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHH
Confidence            56677789999999999999999999765     34566788888777653

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.45  E-value=2.5e-07  Score=61.29  Aligned_cols=38  Identities=29%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      ++..|+|+|.|||||||+|+.|.+++     .+.+++.|.+..
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~   43 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH   43 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence            36789999999999999999999876     355667655443

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>KOG0733|consensus

Probab=98.44  E-value=1.9e-06  Score=67.50  Aligned_cols=41  Identities=29%  Similarity=0.412  Sum_probs=34.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~~   57 (119)
                      |.-|+++||||||||-+|++.|.+-|+.+|++  .+|+..+..
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG  587 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG  587 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence            45699999999999999999999988877776  467777764

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.44  E-value=3.2e-07  Score=74.70  Aligned_cols=39  Identities=38%  Similarity=0.488  Sum_probs=36.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..|.|.||+||||||+|+.||+++++.|++++.+.|...
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a   73 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT   73 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence            579999999999999999999999999999999998864

>PRK06921 hypothetical protein; Provisional

Probab=98.44  E-value=1.4e-06  Score=62.35  Aligned_cols=40  Identities=25%  Similarity=0.188  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc------CccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY------CVCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~------~~~~is~~~l~~~~~   56 (119)
                      ...++|+|++|+|||+++.+++..+      .+.+++..+++....
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~  162 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLK  162 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHH
Confidence            4679999999999999999998753      345777777766543

>TIGR00235 udk uridine kinase

Probab=98.43  E-value=2.3e-07  Score=63.87  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=31.9

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC---ccccchhHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC---VCHLSTGDML   52 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~---~~~is~~~l~   52 (119)
                      |+.+..|.|+|++||||||+++.|+..++   +.+++.|+..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~   44 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY   44 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence            45678899999999999999999998764   5667776653

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK12377 putative replication protein; Provisional

Probab=98.42  E-value=2.6e-06  Score=60.48  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=33.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~   57 (119)
                      ...++|.|+||+|||++|.+++..+     .+.++++.+++.....
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~  146 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHE  146 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHH
Confidence            3578999999999999999999864     3567788888876643

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.42  E-value=3.9e-07  Score=66.13  Aligned_cols=41  Identities=20%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcc-ccchhHHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC-HLSTGDMLRAEV   56 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~-~is~~~l~~~~~   56 (119)
                      +.|..|+|.|++||||||+|..||+++|+. +++ .|.+++..
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~-~D~~re~~  131 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIG-TDSIREVM  131 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEe-chHHHHHH
Confidence            457889999999999999999999999987 456 45555443

>PRK00889 adenylylsulfate kinase; Provisional

Probab=98.42  E-value=3.6e-07  Score=61.16  Aligned_cols=38  Identities=32%  Similarity=0.333  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      ++..|+|+|.|||||||+|+.|+..+     ++.+++.|.+.+
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~   45 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT   45 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence            45689999999999999999999876     366777765533

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.41  E-value=7e-07  Score=56.55  Aligned_cols=82  Identities=17%  Similarity=0.256  Sum_probs=42.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc--------Cc--cccchhHHHHHHHhcCCcHHHHHHhhhhcCcc--cCHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY--------CV--CHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL--VSDELVVD   83 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~--------~~--~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~   83 (119)
                      ....++|+|++|+|||++++.+++.+        +.  .+++.....     ....+...+.+.+.....  ...+.+.+
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~l~~   77 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-----TPRDFAQEILEALGLPLKSRQTSDELRS   77 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-----SHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-----CHHHHHHHHHHHhCccccccCCHHHHHH
Confidence            34578999999999999999999865        33  233332211     011122333333322221  23333446


Q ss_pred             HHHHhhcCCCCCCcEEEeCC
Q psy9244          84 LISNNLDKPECQNGFLLDGF  103 (119)
Q Consensus        84 ll~~~l~~~~~~~g~vldg~  103 (119)
                      .+.+.+.+... .-+|||++
T Consensus        78 ~~~~~l~~~~~-~~lviDe~   96 (131)
T PF13401_consen   78 LLIDALDRRRV-VLLVIDEA   96 (131)
T ss_dssp             HHHHHHHHCTE-EEEEEETT
T ss_pred             HHHHHHHhcCC-eEEEEeCh
Confidence            66666665432 46788886

>PRK09183 transposase/IS protein; Provisional

Probab=98.41  E-value=1.9e-06  Score=61.43  Aligned_cols=44  Identities=30%  Similarity=0.338  Sum_probs=34.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHHH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAE   55 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~~   55 (119)
                      .|.....+++|+||||+||||++..|+..     +.+.+++..+++...
T Consensus        97 ~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l  145 (259)
T PRK09183         97 SFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQL  145 (259)
T ss_pred             CchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHH
Confidence            45667788999999999999999999754     245677777777554

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.40  E-value=3e-07  Score=67.09  Aligned_cols=35  Identities=29%  Similarity=0.321  Sum_probs=32.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      +..|+|+||+|||||++|..||++++..+||.|.+
T Consensus         4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            45799999999999999999999999999998874

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.39  E-value=3.3e-06  Score=62.21  Aligned_cols=42  Identities=19%  Similarity=0.281  Sum_probs=34.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVS   57 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~   57 (119)
                      ....++|.|++|+|||+++.++|..+     .+.++++.+++.....
T Consensus       182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~  228 (329)
T PRK06835        182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE  228 (329)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH
Confidence            34679999999999999999999863     5778899998876643

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=98.39  E-value=2.2e-07  Score=61.49  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=24.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      +|+|+|+||+||||+++.|++. |+.++  .+..+....
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~   36 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIE   36 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHH
Confidence            6899999999999999999988 87766  555555543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.39  E-value=1.1e-07  Score=63.14  Aligned_cols=43  Identities=26%  Similarity=0.357  Sum_probs=33.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      +..++|+|+|+|||||||++..+++.+.-.-++++-++..+..
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR   45 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR   45 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence            4578999999999999999999998765444555555555554

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.38  E-value=1.6e-06  Score=61.74  Aligned_cols=85  Identities=27%  Similarity=0.405  Sum_probs=55.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhcCC--cHHHHHHh-hhhcCcccCHH--------
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSSGS--NLGKKLKE-TMDAGKLVSDE--------   79 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~~~--~~~~~~~~-~~~~g~~~~~~--------   79 (119)
                      ....+++.|+||+|||++|.+|+.+.     .+.++++.+++.+......  .....+.. +.....++.||        
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~  183 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQ  183 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCH
Confidence            56789999999999999999998763     4667899999998876433  23333443 43444444443        


Q ss_pred             ----HHHHHHHHhhcCCCCCCcEEEeCC
Q psy9244          80 ----LVVDLISNNLDKPECQNGFLLDGF  103 (119)
Q Consensus        80 ----~~~~ll~~~l~~~~~~~g~vldg~  103 (119)
                          .+.++|..+.....   .++...+
T Consensus       184 ~~~~~~~q~I~~r~~~~~---~~~tsN~  208 (254)
T COG1484         184 EEADLLFQLISRRYESRS---LIITSNL  208 (254)
T ss_pred             HHHHHHHHHHHHHHhhcc---ceeecCC
Confidence                34556666665532   2444444

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.37  E-value=4.1e-06  Score=54.96  Aligned_cols=33  Identities=33%  Similarity=0.356  Sum_probs=26.4

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc---C--ccccchhHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGDML   52 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~---~--~~~is~~~l~   52 (119)
                      |+|+|.|||||||+|+.|++.+   +  +.+++.+.+.
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r   39 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR   39 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence            7899999999999999999987   4  4455555443

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.35  E-value=4.9e-07  Score=63.16  Aligned_cols=30  Identities=33%  Similarity=0.457  Sum_probs=24.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ...+++.||||+||||+|..+|++++..+.
T Consensus        50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~   79 (233)
T PF05496_consen   50 LDHMLFYGPPGLGKTTLARIIANELGVNFK   79 (233)
T ss_dssp             --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred             cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence            357999999999999999999999876553

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.35  E-value=5e-07  Score=56.63  Aligned_cols=27  Identities=41%  Similarity=0.668  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..+++|+|||||||||+++.++..+..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~   28 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP   28 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence            457999999999999999999987643

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.33  E-value=2.4e-06  Score=57.17  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=36.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSS   58 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~   58 (119)
                      ..+++++|-||+||||+++...+.+ +..+++.++++-+....
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k   46 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKK   46 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHH
Confidence            4688999999999999999999988 77889999998776653

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.33  E-value=4.3e-07  Score=61.36  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAE   55 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~   55 (119)
                      .|.|.|+|||||||+|+.|++.+     ++.+++.|++.+..
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~   42 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR   42 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc
Confidence            37899999999999999999985     56789999988744

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.33  E-value=5e-07  Score=61.57  Aligned_cols=24  Identities=38%  Similarity=0.391  Sum_probs=22.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .|.|.|++||||||+|+.|+..++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999886

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK03846 adenylylsulfate kinase; Provisional

Probab=98.32  E-value=7.6e-07  Score=60.90  Aligned_cols=41  Identities=27%  Similarity=0.314  Sum_probs=33.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML   52 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~   52 (119)
                      .++.++..|+|+|.+||||||+++.|+..+     +..+++.+++.
T Consensus        19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~   64 (198)
T PRK03846         19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR   64 (198)
T ss_pred             hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence            567788899999999999999999999875     35666665554

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=98.32  E-value=1.4e-05  Score=53.93  Aligned_cols=40  Identities=35%  Similarity=0.369  Sum_probs=31.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      -.++..|+|+|+|||||||+++.|+..+     ++.+++.+++-+
T Consensus        15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~   59 (184)
T TIGR00455        15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRH   59 (184)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHh
Confidence            3556789999999999999999999875     255667665443

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF13173 AAA_14: AAA domain

Probab=98.32  E-value=4.8e-06  Score=53.09  Aligned_cols=39  Identities=28%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC----ccccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC----VCHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~----~~~is~~~l~~~~   55 (119)
                      ...++|.|+.||||||+++.+++.+.    +.+++.++.....
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~   44 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRR   44 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHH
Confidence            35789999999999999999998764    7888887765533

>PLN02840 tRNA dimethylallyltransferase

Probab=98.31  E-value=7.4e-07  Score=67.36  Aligned_cols=38  Identities=24%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      .-.+...|+|+||+||||||+|..|+++++..+|+.|.
T Consensus        17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds   54 (421)
T PLN02840         17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS   54 (421)
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence            33444579999999999999999999999988888876

>KOG0744|consensus

Probab=98.31  E-value=4.8e-07  Score=66.25  Aligned_cols=42  Identities=24%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcc-----------ccchhHHHHHHHhcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVC-----------HLSTGDMLRAEVSSG   59 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~-----------~is~~~l~~~~~~~~   59 (119)
                      ..|++.||||.|||++|++||+++.+.           -++...++.....+.
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsES  230 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSES  230 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhh
Confidence            468899999999999999999986432           345566666666543

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=98.31  E-value=4.1e-06  Score=59.77  Aligned_cols=30  Identities=37%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ...++|.|+||+|||++|+.+++.+|..++
T Consensus        21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~   50 (262)
T TIGR02640        21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM   50 (262)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence            346899999999999999999998876655

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK07667 uridine kinase; Provisional

Probab=98.31  E-value=6.4e-07  Score=61.12  Aligned_cols=40  Identities=15%  Similarity=0.050  Sum_probs=32.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAE   55 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~   55 (119)
                      ....|.|.|++||||||+|+.|++.+     +..+++.|+.....
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~   60 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER   60 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence            34788999999999999999999875     35688998876543

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.29  E-value=7.6e-07  Score=60.04  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      +..++|+|++||||||+++.|+..++..+++.+++
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~   37 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL   37 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence            45789999999999999999999998888887765

>PF05729 NACHT: NACHT domain

Probab=98.29  E-value=1.6e-06  Score=56.59  Aligned_cols=23  Identities=35%  Similarity=0.469  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|+|+||+||||+++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            57899999999999999999764

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.29  E-value=4.3e-06  Score=56.67  Aligned_cols=27  Identities=26%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      |+|.|++||||||+++.|++.+++.++
T Consensus         2 I~ieG~~GsGKSTl~~~L~~~~~~~~~   28 (193)
T cd01673           2 IVVEGNIGAGKSTLAKELAEHLGYEVV   28 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCccc
Confidence            789999999999999999998776544

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK08116 hypothetical protein; Validated

Probab=98.28  E-value=4.5e-06  Score=59.83  Aligned_cols=39  Identities=26%  Similarity=0.299  Sum_probs=32.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~   56 (119)
                      .-++|.|++|+|||++|.+++..+     .+.+++..+++....
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~  158 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK  158 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence            358999999999999999999863     456778888887654

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.28  E-value=7.3e-07  Score=67.39  Aligned_cols=35  Identities=29%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      .+.+|+|+||||+|||++|++||+.+++.++.++.
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            34689999999999999999999999888777763

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.28  E-value=5.7e-07  Score=61.29  Aligned_cols=35  Identities=26%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLR   53 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~   53 (119)
                      .|.|+|++||||||+++.|+..+   ++.+++.|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence            37899999999999999999886   477888887654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PLN02924 thymidylate kinase

Probab=98.28  E-value=2.1e-06  Score=59.89  Aligned_cols=61  Identities=20%  Similarity=0.241  Sum_probs=41.0

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCccc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV   76 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~   76 (119)
                      ++++..|+|.|..||||||+++.|++.+....+++ ...++ -...+..|+.+++++..+..+
T Consensus        13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~   73 (220)
T PLN02924         13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQL   73 (220)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCC
Confidence            45567899999999999999999999886544433 11111 112456677777776654433

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.28  E-value=7.1e-06  Score=51.84  Aligned_cols=25  Identities=44%  Similarity=0.684  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...++|+|+||+|||++++.+++.+
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999876

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.27  E-value=7.3e-07  Score=64.47  Aligned_cols=31  Identities=29%  Similarity=0.387  Sum_probs=29.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      |+|+||+|||||++|..|+++++..+||+|.
T Consensus         2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds   32 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDS   32 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCCcEEEech
Confidence            7999999999999999999999999999986

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PTZ00301 uridine kinase; Provisional

Probab=98.27  E-value=7.5e-07  Score=61.75  Aligned_cols=37  Identities=16%  Similarity=0.174  Sum_probs=28.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDMLR   53 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~~   53 (119)
                      ...|.|.|+|||||||+|+.|+++++       +..++.|+..+
T Consensus         3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~   46 (210)
T PTZ00301          3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR   46 (210)
T ss_pred             CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence            36789999999999999999987652       33566676554

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.27  E-value=8.5e-07  Score=57.06  Aligned_cols=27  Identities=37%  Similarity=0.480  Sum_probs=24.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      .|+|+|+||+|||++++.+|+.++..+
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~   27 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPV   27 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence            389999999999999999999987554

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.26  E-value=1.3e-06  Score=59.50  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=23.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..|+|.|+.||||||+++.|++.+
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999999976

>PRK05439 pantothenate kinase; Provisional

Probab=98.26  E-value=8.4e-07  Score=64.80  Aligned_cols=41  Identities=22%  Similarity=0.189  Sum_probs=33.3

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDMLR   53 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~~   53 (119)
                      ....+..|.|.|+|||||||+|+.|++.++       +.++++|++..
T Consensus        82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            456678999999999999999999998542       56778888764

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.26  E-value=4.6e-06  Score=57.62  Aligned_cols=39  Identities=18%  Similarity=0.155  Sum_probs=30.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      .....++|+|++||||||+|+.+++..     .+.+++..++..
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~   79 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ   79 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence            345679999999999999999998764     356777776653

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>KOG0735|consensus

Probab=98.25  E-value=1.5e-05  Score=63.56  Aligned_cols=99  Identities=21%  Similarity=0.351  Sum_probs=67.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchh--HHHHHHHhcCCcHHHHHHhhhhc--------------------
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG--DMLRAEVSSGSNLGKKLKETMDA--------------------   72 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~--~l~~~~~~~~~~~~~~~~~~~~~--------------------   72 (119)
                      +....|++.||||+|||.+|.++|...++.+||+.  +++..++.....   -+++.+..                    
T Consensus       699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq---~vR~lF~rA~~a~PCiLFFDEfdSiAPk  775 (952)
T KOG0735|consen  699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQ---NVRDLFERAQSAKPCILFFDEFDSIAPK  775 (952)
T ss_pred             ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHH---HHHHHHHHhhccCCeEEEeccccccCcc
Confidence            34457999999999999999999999999998874  788887753211   11111111                    


Q ss_pred             ----CcccCHHHHHHHHHHhhcCCC-------------------------CCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          73 ----GKLVSDELVVDLISNNLDKPE-------------------------CQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        73 ----g~~~~~~~~~~ll~~~l~~~~-------------------------~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                          ..-+.|++++++|.+ |+..+                         .-...|+.++|...+..+.|+..-
T Consensus       776 RGhDsTGVTDRVVNQlLTe-lDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls  848 (952)
T KOG0735|consen  776 RGHDSTGVTDRVVNQLLTE-LDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS  848 (952)
T ss_pred             cCCCCCCchHHHHHHHHHh-hccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence                112556777776654 43321                         113668889999998888887654

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.25  E-value=1e-06  Score=66.62  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      +.+|+|+||||+|||++|+.||+.+++.++.++.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            5789999999999999999999999887776653

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.24  E-value=1.8e-06  Score=65.91  Aligned_cols=40  Identities=25%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcccc-chhHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHL-STGDMLRAE   55 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~i-s~~~l~~~~   55 (119)
                      .++..|++.|++||||||+|..||.++++.++ +. |.+++.
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~t-D~iR~~  293 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVST-DAVREV  293 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeeh-hHHHHH
Confidence            45788999999999999999999999999855 55 444443

>COG0645 Predicted kinase [General function prediction only]

Probab=98.24  E-value=1.1e-05  Score=53.93  Aligned_cols=39  Identities=26%  Similarity=0.257  Sum_probs=35.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      -+++.|.|||||||+|+.+++.++..+|+.|++.+.+..
T Consensus         3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g   41 (170)
T COG0645           3 LVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG   41 (170)
T ss_pred             EEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC
Confidence            468899999999999999999999999999998887765

>PRK09087 hypothetical protein; Validated

Probab=98.24  E-value=1.7e-06  Score=60.52  Aligned_cols=36  Identities=25%  Similarity=0.356  Sum_probs=31.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLR   53 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~   53 (119)
                      ..++|.|++||||||+++.+++..+..+++.+++..
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~   80 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS   80 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence            458999999999999999999999988998865443

>PRK15453 phosphoribulokinase; Provisional

Probab=98.23  E-value=1.1e-06  Score=63.32  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=30.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDML   52 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~   52 (119)
                      ++++.|.|+|.|||||||+|+.|++.++     ..+++.|+.-
T Consensus         3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh   45 (290)
T PRK15453          3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH   45 (290)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence            4667899999999999999999998663     4556666544

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=98.23  E-value=1.5e-06  Score=68.22  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCc------cccchhHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCV------CHLSTGDM   51 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~------~~is~~~l   51 (119)
                      ..+.+..|+|+|.|||||||+|+.|+++++.      .+++.|.+
T Consensus       388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v  432 (568)
T PRK05537        388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV  432 (568)
T ss_pred             ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence            3445668999999999999999999999885      77777655

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=98.22  E-value=1.9e-06  Score=60.13  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      +.|.|+|.|||||||+|+.+.+......+++++-+++.+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~g~~~~~~~~d~ik~~l~   40 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIENYNAVKYQLADPIKEILA   40 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhcCCcEEEehhHHHHHHHH
Confidence            3689999999999999999876544444999998887664

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.22  E-value=1.4e-06  Score=58.37  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..++|+|++||||||+++.|+..++
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3689999999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.22  E-value=1.1e-06  Score=66.27  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=30.0

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      .-+....+|+|+|++|||||||++.|++.||...
T Consensus       214 vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~  247 (399)
T PRK08099        214 VRPFFVRTVAILGGESSGKSTLVNKLANIFNTTS  247 (399)
T ss_pred             HhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence            4566778999999999999999999999988764

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.22  E-value=1.3e-06  Score=59.18  Aligned_cols=31  Identities=29%  Similarity=0.393  Sum_probs=25.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      +..++|+||+||||||+++.|+..++..++.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~   32 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLV   32 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence            3578999999999999999999876644333

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=98.21  E-value=1.6e-06  Score=58.49  Aligned_cols=45  Identities=31%  Similarity=0.385  Sum_probs=33.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchhHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGDMLRAEVS   57 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~~l~~~~~~   57 (119)
                      -...++..|+++|.+||||||+|.+|.+++   |  ..+++ +|-+|.-+.
T Consensus        18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD-GDnvR~gL~   67 (197)
T COG0529          18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD-GDNVRHGLN   67 (197)
T ss_pred             HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec-ChhHhhccc
Confidence            345667899999999999999999999875   3  33444 455565554

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.20  E-value=1.3e-06  Score=59.17  Aligned_cols=26  Identities=38%  Similarity=0.489  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      +..|+|.|++||||||+++.|++.++
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999874

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.19  E-value=1.5e-06  Score=58.16  Aligned_cols=26  Identities=23%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..|+|+||+||||||+++.|++.+..
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCcc
Confidence            46899999999999999999987643

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=98.19  E-value=3.4e-05  Score=53.94  Aligned_cols=98  Identities=19%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhc---------CCcHHHHHHhhhhcCcccCH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSS---------GSNLGKKLKETMDAGKLVSD   78 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~---------~~~~~~~~~~~~~~g~~~~~   78 (119)
                      +......|+++|.|+.|||++|++|++.+     ...++++++.-|.....         ....+..+++.      +-.
T Consensus         8 ~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~------~a~   81 (222)
T PF01591_consen    8 FHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQ------IAK   81 (222)
T ss_dssp             -----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHH------HHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHH------HHH
Confidence            44566789999999999999999999864     46789999998887754         12222222221      112


Q ss_pred             HHHHHHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHHHHhh
Q psy9244          79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        79 ~~~~~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      ..+.+++. .|.+. .+..-|+|+--.|.+.-+.+.+.++
T Consensus        82 ~~l~dl~~-~l~~~-~G~VAI~DATN~T~~RR~~l~~~~~  119 (222)
T PF01591_consen   82 EALEDLIE-WLQEE-GGQVAIFDATNSTRERRKMLVERFK  119 (222)
T ss_dssp             HHHHHHHH-HHHTS---SEEEEES---SHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHhcC-CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            23333333 34422 3467899998888888777776654

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.18  E-value=1.2e-06  Score=61.11  Aligned_cols=33  Identities=24%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDML   52 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~   52 (119)
                      |.|.|++||||||+|+.|+..+.       +.++++|+..
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            67999999999999999998762       4567777764

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.16  E-value=1.8e-06  Score=64.41  Aligned_cols=43  Identities=23%  Similarity=0.288  Sum_probs=34.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDMLRAEVS   57 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~~~~~~   57 (119)
                      +.|..+.|.||||+|||.+|+++|+++|+.+  ++.++|+.....
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG  190 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG  190 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence            4567788999999999999999999998664  577777765543

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.16  E-value=2e-06  Score=57.97  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .|+|.|++||||||+++.|++.+
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l   24 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERL   24 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999987

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.15  E-value=2.4e-06  Score=57.29  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +|+|+|+||+||||+.+.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            68999999999999999999876

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.14  E-value=2.7e-06  Score=58.14  Aligned_cols=27  Identities=30%  Similarity=0.493  Sum_probs=24.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ++..|+|+|++||||||+++.|+..+.
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            456899999999999999999998874

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.14  E-value=3e-06  Score=58.43  Aligned_cols=29  Identities=17%  Similarity=0.395  Sum_probs=25.2

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..|..+..|+|+||+||||||+++.|.+.
T Consensus         8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738          8 NKPAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            55667888999999999999999999764

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=98.13  E-value=3.4e-06  Score=56.93  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRAE   55 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~~   55 (119)
                      ..|+|.|++.|||||+|+.|.+.+.  +.|+++|.++...
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~   41 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMM   41 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhc
Confidence            4789999999999999999999884  5688999888753

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.13  E-value=1.2e-06  Score=58.32  Aligned_cols=29  Identities=28%  Similarity=0.366  Sum_probs=26.3

Q ss_pred             EcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          23 LGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        23 ~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      +|++||||||+++.|+..++..+++.|.+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~   29 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL   29 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence            59999999999999999999999988654

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=3.1e-06  Score=61.64  Aligned_cols=36  Identities=28%  Similarity=0.274  Sum_probs=32.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      .+..|+|+||.+||||.+|-.||+++|..+||+|.+
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            356789999999999999999999999999999874

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.13  E-value=2.4e-06  Score=65.96  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=28.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      .+.-|++.||||+|||++|+++|..+++.++.+
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l  290 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL  290 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence            345699999999999999999999998776543

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.12  E-value=2.2e-06  Score=62.07  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=30.0

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDML   52 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~   52 (119)
                      .+.+..|.|.|++||||||+|+.|+..+.       +.+++.|+..
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            45678899999999999999998866542       4566777654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.12  E-value=6e-06  Score=60.28  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=53.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhc--CCcHHHHHHhhhhcCcccCH-----------
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSS--GSNLGKKLKETMDAGKLVSD-----------   78 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~-----------   78 (119)
                      ...++|.|++|+|||+++.+++..+     .+.++++.+++.+....  .....+.+..+.+...++.|           
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~  235 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWV  235 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHH
Confidence            4579999999999999999999874     35677888887776542  22334445544444433333           


Q ss_pred             --HHHHHHHHHhhcCCCCCCcEEEeCCC
Q psy9244          79 --ELVVDLISNNLDKPECQNGFLLDGFP  104 (119)
Q Consensus        79 --~~~~~ll~~~l~~~~~~~g~vldg~P  104 (119)
                        +++..++..|+.+.  ..-++-..|+
T Consensus       236 ~~~ll~~Il~~R~~~~--~~ti~TSNl~  261 (306)
T PRK08939        236 RDEVLGVILQYRMQEE--LPTFFTSNFD  261 (306)
T ss_pred             HHHHHHHHHHHHHHCC--CeEEEECCCC
Confidence              23444566676442  2345555564

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.12  E-value=2.3e-06  Score=64.25  Aligned_cols=39  Identities=23%  Similarity=0.386  Sum_probs=30.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~~~~   55 (119)
                      +..|+|.||||+|||++|+++|.+.+..+  ++..++....
T Consensus       165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~  205 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKF  205 (389)
T ss_pred             CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhh
Confidence            45799999999999999999999887554  4555665443

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.11  E-value=2.8e-06  Score=63.57  Aligned_cols=32  Identities=38%  Similarity=0.452  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      .....++.||||+||||+|+.||+..+..+..
T Consensus        47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~   78 (436)
T COG2256          47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEA   78 (436)
T ss_pred             CCceeEEECCCCCCHHHHHHHHHHhhCCceEE
Confidence            34578999999999999999999987765543

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.11  E-value=3.4e-06  Score=58.24  Aligned_cols=30  Identities=23%  Similarity=0.280  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ...|+|-|+.|+||||+|++||++++..++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~   33 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF   33 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence            467999999999999999999999986554

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.11  E-value=7.9e-06  Score=56.79  Aligned_cols=28  Identities=29%  Similarity=0.232  Sum_probs=24.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      .|+|-|.-||||||+++.|+++++..++
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~   28 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKYF   28 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence            3789999999999999999999876544

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.10  E-value=2.6e-05  Score=61.57  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=31.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHHHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLRAEV   56 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~~~~   56 (119)
                      ++|.|++|+|||+|+++++...       .+.|++..+++.+..
T Consensus       317 L~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~  360 (617)
T PRK14086        317 LFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI  360 (617)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence            8999999999999999999853       467889988876654

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.10  E-value=6.2e-06  Score=58.42  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~   56 (119)
                      ..++|.|+||+|||+++.+++..+     .+.++++.+++....
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~  143 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK  143 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH
Confidence            468999999999999999999865     456778888886554

>PRK07429 phosphoribulokinase; Provisional

Probab=98.09  E-value=3.8e-06  Score=61.84  Aligned_cols=39  Identities=26%  Similarity=0.159  Sum_probs=32.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC---ccccchhHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC---VCHLSTGDML   52 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~---~~~is~~~l~   52 (119)
                      ..++..|.|+|++||||||+++.|+..++   ..+++.|++.
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~   46 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH   46 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence            45678999999999999999999999876   5567777763

>KOG0733|consensus

Probab=98.09  E-value=2.5e-06  Score=66.91  Aligned_cols=33  Identities=36%  Similarity=0.475  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      +.-|+|.||||||||.+|+++|.++++.++++.
T Consensus       223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~is  255 (802)
T KOG0733|consen  223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS  255 (802)
T ss_pred             CCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence            445899999999999999999999999887653

>PRK06620 hypothetical protein; Validated

Probab=98.09  E-value=3.3e-06  Score=58.62  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      ..++|.|||||||||+++++++..+..+++.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~   75 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD   75 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcch
Confidence            4689999999999999999998877655553

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.08  E-value=3.6e-06  Score=62.50  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ....++|+|||||||||+|++|++.++.
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            3456899999999999999999998754

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=98.08  E-value=4e-06  Score=63.51  Aligned_cols=32  Identities=34%  Similarity=0.417  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      ...++|+||||||||++|+.||+.++..++.+
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~i  139 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIA  139 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceec
Confidence            45799999999999999999999988766644

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.08  E-value=4e-06  Score=62.36  Aligned_cols=38  Identities=26%  Similarity=0.467  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRA   54 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~   54 (119)
                      +..++|.||||+|||++|++++..++..++  +..++...
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~  195 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK  195 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH
Confidence            456999999999999999999998876554  33445443

Many proteins may score above the trusted cutoff because an internal

>PRK06761 hypothetical protein; Provisional

Probab=98.08  E-value=3.5e-06  Score=60.82  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..|+|.|+|||||||+++.|+++++.
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            46999999999999999999998764

>KOG0730|consensus

Probab=98.08  E-value=2.2e-05  Score=61.84  Aligned_cols=43  Identities=30%  Similarity=0.433  Sum_probs=34.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEVS   57 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~~   57 (119)
                      .++..|++.||||||||++|+++|..-++.++++  .+++..+..
T Consensus       466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG  510 (693)
T KOG0730|consen  466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG  510 (693)
T ss_pred             CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC
Confidence            4456799999999999999999999887777665  456655543

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=98.06  E-value=7.9e-06  Score=54.86  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=23.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC--ccccch
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC--VCHLST   48 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~--~~~is~   48 (119)
                      ++|+|++|||||++|..++...+  ..|++.
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at   32 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT   32 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence            78999999999999999998754  445544

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.06  E-value=6.7e-06  Score=57.14  Aligned_cols=37  Identities=19%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      ...++|+|++|||||++|+.++...     .+.+++..++..
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~   83 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL   83 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence            3468999999999999999999865     677777766543

>PRK06893 DNA replication initiation factor; Validated

Probab=98.06  E-value=5e-06  Score=58.18  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG   49 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~   49 (119)
                      +.++|.|+||+||||++++++..+     ++.++++.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            458999999999999999999764     66777765

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.05  E-value=5.2e-06  Score=56.51  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..|+|+||+||||||+++.|.+++
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            46679999999999999999998875

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.05  E-value=4.4e-06  Score=64.50  Aligned_cols=37  Identities=32%  Similarity=0.476  Sum_probs=29.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR   53 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~   53 (119)
                      +..++|.||||+|||++|+++|...++.++  +..++..
T Consensus        88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~  126 (495)
T TIGR01241        88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE  126 (495)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence            456999999999999999999999876655  4444443

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.05  E-value=4.8e-06  Score=58.50  Aligned_cols=33  Identities=12%  Similarity=0.082  Sum_probs=27.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGD   50 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~   50 (119)
                      ..++|+||+|+||||++++++....     +.++++++
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            4789999999999999999997643     56777765

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.05  E-value=4.8e-06  Score=62.82  Aligned_cols=39  Identities=23%  Similarity=0.444  Sum_probs=30.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRA   54 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~   54 (119)
                      .+..++|.||||+|||++|+++|...+..++.+  .++...
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k  218 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK  218 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH
Confidence            456799999999999999999999887665543  344443

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.04  E-value=3.8e-06  Score=61.67  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=26.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ..|+|.|+||+||||+++.+|+++|+.++
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            46999999999999999999999987665

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PLN02348 phosphoribulokinase

Probab=98.03  E-value=5.1e-06  Score=62.32  Aligned_cols=28  Identities=21%  Similarity=0.172  Sum_probs=25.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .++..|.|.|++||||||+|+.|++.++
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4667889999999999999999999885

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.03  E-value=6.3e-06  Score=59.57  Aligned_cols=29  Identities=38%  Similarity=0.517  Sum_probs=25.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      .+..++|+||||+|||++|+.+|+.++..
T Consensus        29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~   57 (305)
T TIGR00635        29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN   57 (305)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            34568999999999999999999988644

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=98.03  E-value=3.2e-06  Score=62.49  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=29.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC------ccccchhHHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC------VCHLSTGDMLR   53 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~------~~~is~~~l~~   53 (119)
                      ++|+|+|||||||+++.|++.+.      +.+++.||++.
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~   41 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP   41 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence            68999999999999999987654      55899999884

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=98.02  E-value=6.8e-06  Score=57.07  Aligned_cols=87  Identities=26%  Similarity=0.346  Sum_probs=47.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH------cCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcc--------------
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK------YCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL--------------   75 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~------~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~--------------   75 (119)
                      ++..++|.|+||||||++|..++.+      .++.+++.++-.++....-...+-.+.++...|..              
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~   97 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP   97 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence            4567899999999999999987632      34667776544433333211222233333333221              


Q ss_pred             cCHHHHHHHHHHhhcCCCCCCcEEEeCC
Q psy9244          76 VSDELVVDLISNNLDKPECQNGFLLDGF  103 (119)
Q Consensus        76 ~~~~~~~~ll~~~l~~~~~~~g~vldg~  103 (119)
                      ...+.+...+.+.++.... ..+|||++
T Consensus        98 ~~~~~l~~~i~~~i~~~~~-~~vVIDsl  124 (226)
T PF06745_consen   98 NDLEELLSKIREAIEELKP-DRVVIDSL  124 (226)
T ss_dssp             CCHHHHHHHHHHHHHHHTS-SEEEEETH
T ss_pred             cCHHHHHHHHHHHHHhcCC-CEEEEECH
Confidence            1123334445555554433 68999985

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>KOG0734|consensus

Probab=98.02  E-value=2.8e-05  Score=60.48  Aligned_cols=33  Identities=30%  Similarity=0.403  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      -|.-|+++||||.|||-+|+++|-+-++.++..
T Consensus       336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~  368 (752)
T KOG0734|consen  336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA  368 (752)
T ss_pred             CCCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence            345699999999999999999999988887744

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.02  E-value=2.7e-06  Score=55.77  Aligned_cols=30  Identities=27%  Similarity=0.436  Sum_probs=27.7

Q ss_pred             EcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244          23 LGPPGSGKGTQAPLFAKKYCVCHLSTGDML   52 (119)
Q Consensus        23 ~G~pGsGKstla~~la~~~~~~~is~~~l~   52 (119)
                      +|..||||||+++.||+++|+.+++-|++-
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlH   30 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLH   30 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccC
Confidence            489999999999999999999999988864

>PHA02244 ATPase-like protein

Probab=98.02  E-value=4.8e-06  Score=62.14  Aligned_cols=38  Identities=21%  Similarity=0.263  Sum_probs=31.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLR   53 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~   53 (119)
                      ....|+|.|+||+|||++|+.++..++..++.+..+..
T Consensus       118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d  155 (383)
T PHA02244        118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMD  155 (383)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChH
Confidence            34569999999999999999999999988887765543

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.02  E-value=9.5e-06  Score=57.62  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=36.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      .+.|..|+|-|.||+||||+|.-+|.++|+.++--.|.+++...
T Consensus        86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR  129 (299)
T COG2074          86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLR  129 (299)
T ss_pred             cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHH
Confidence            45678889999999999999999999999998755566666554

>PRK05642 DNA replication initiation factor; Validated

Probab=98.01  E-value=1.1e-05  Score=56.74  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRA   54 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~   54 (119)
                      ..++|.|++|+|||+++++++..     ..+.+++.++++..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~   87 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR   87 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence            45889999999999999999753     46778899887753

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.01  E-value=3.9e-05  Score=61.01  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      +.++..|+++|.|||||||+|+.|++++     ++.+++.|++-.
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~  501 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH  501 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence            3457889999999999999999999986     356778766544

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.00  E-value=1.7e-05  Score=60.57  Aligned_cols=36  Identities=28%  Similarity=0.349  Sum_probs=28.0

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG   49 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~   49 (119)
                      +..+..|+++|++||||||+|..||..+     .+.+++.|
T Consensus        92 ~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D  132 (437)
T PRK00771         92 PLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD  132 (437)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            3567889999999999999999998764     24445554

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.99  E-value=5.8e-06  Score=62.57  Aligned_cols=30  Identities=37%  Similarity=0.473  Sum_probs=26.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ..+|+|+||||||||++|+.||+.+++.+.
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~  145 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFA  145 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence            358999999999999999999999876654

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.99  E-value=2.6e-05  Score=58.68  Aligned_cols=26  Identities=38%  Similarity=0.520  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..|+++|++|+||||.+..||..+
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~  198 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIY  198 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999764

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.99  E-value=2.3e-05  Score=54.94  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=23.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH-----cCccccchh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTG   49 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~   49 (119)
                      ...++|.|+||+||||+|..++..     .+..+++.+
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            448999999999999998665442     245556544

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.98  E-value=4.6e-05  Score=54.72  Aligned_cols=43  Identities=28%  Similarity=0.458  Sum_probs=34.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSS   58 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~   58 (119)
                      -|.+|++.||||+|||.+|++||.+.+..++  ...+|+-+....
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd  194 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD  194 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence            4678999999999999999999999876655  455677776654

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.98  E-value=1.1e-05  Score=52.24  Aligned_cols=30  Identities=23%  Similarity=0.266  Sum_probs=26.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +....|+|.|+.|+||||+++.+++.+++.
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            345689999999999999999999998864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PLN02796 D-glycerate 3-kinase

Probab=97.98  E-value=6.4e-06  Score=60.93  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=30.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDML   52 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~   52 (119)
                      ..+..|.|.|++||||||+++.|+..+.     ...+++|++.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            4568899999999999999999998763     4556776654

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.97  E-value=3.7e-05  Score=51.21  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=24.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG   49 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~---~--~~~is~~   49 (119)
                      .++++|+|||||||++..++..+   |  +.+++.|
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D   37 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD   37 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            57899999999999999998764   3  4456655

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.96  E-value=7.4e-06  Score=53.04  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.9

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~   42 (119)
                      |+|+||+||||||+++.|++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            78999999999999999998753

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.96  E-value=8.8e-06  Score=62.76  Aligned_cols=86  Identities=13%  Similarity=0.159  Sum_probs=51.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcc----------cCHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL----------VSDEL   80 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~----------~~~~~   80 (119)
                      +...++|.|+||+||||++..++...     .+.|++.++-..+....-..++-.+.++...|.+          .+++.
T Consensus       262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~  341 (484)
T TIGR02655       262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH  341 (484)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence            44578999999999999999998743     3677776655444443322233233444444422          12444


Q ss_pred             HHHHHHHhhcCCCCCCcEEEeCC
Q psy9244          81 VVDLISNNLDKPECQNGFLLDGF  103 (119)
Q Consensus        81 ~~~ll~~~l~~~~~~~g~vldg~  103 (119)
                      +.. +.+.+.+.. .+.+|||++
T Consensus       342 ~~~-i~~~i~~~~-~~~vvIDsi  362 (484)
T TIGR02655       342 LQI-IKSEIADFK-PARIAIDSL  362 (484)
T ss_pred             HHH-HHHHHHHcC-CCEEEEcCH
Confidence            444 445554433 357899987

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK04195 replication factor C large subunit; Provisional

Probab=97.96  E-value=8.6e-06  Score=62.75  Aligned_cols=32  Identities=31%  Similarity=0.461  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      +..++|.||||+||||+|+.+|+.+++.++.+
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel   70 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL   70 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            56799999999999999999999998666543

>KOG1970|consensus

Probab=97.96  E-value=1.3e-05  Score=62.25  Aligned_cols=30  Identities=27%  Similarity=0.422  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ..++|+||+||||||..+.|++++|+.++-
T Consensus       111 ~iLLltGPsGcGKSTtvkvLskelg~~~~E  140 (634)
T KOG1970|consen  111 RILLLTGPSGCGKSTTVKVLSKELGYQLIE  140 (634)
T ss_pred             eEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence            466899999999999999999999987663

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.96  E-value=8.5e-06  Score=59.77  Aligned_cols=29  Identities=38%  Similarity=0.502  Sum_probs=25.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      +..++|.||||+|||++|+.+|+.++..+
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~   79 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNI   79 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence            45689999999999999999999987644

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.96  E-value=6.1e-06  Score=58.25  Aligned_cols=20  Identities=35%  Similarity=0.547  Sum_probs=17.7

Q ss_pred             EEcCCCCCHHHHHHHHHhHc
Q psy9244          22 LLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        22 i~G~pGsGKstla~~la~~~   41 (119)
                      |+||+||||||+|+.+.+.+
T Consensus         1 ViGpaGSGKTT~~~~~~~~~   20 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWL   20 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999865

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.95  E-value=1.8e-05  Score=56.45  Aligned_cols=92  Identities=18%  Similarity=0.113  Sum_probs=50.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH--c----C-ccccchhHHHHHHHhcCCcHHHHHHhhhhcC-----cccCHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK--Y----C-VCHLSTGDMLRAEVSSGSNLGKKLKETMDAG-----KLVSDELVV   82 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~--~----~-~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~   82 (119)
                      .....|.|+|++|+||||+|..+++.  .    + +..++.+.-.     ........+...+...     .....+...
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~   91 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP-----SLEQLLEQILRQLGEPDSSISDPKDIEELQ   91 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S-----CCHHHHHHHHHHHTCC-STSSCCSSHHHHH
T ss_pred             CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccc-----cccccccccccccccccccccccccccccc
Confidence            45678899999999999999999976  1    1 2223322100     0011112222222222     223445567


Q ss_pred             HHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHH
Q psy9244          83 DLISNNLDKPECQNGFLLDGFPRTVPQAEKVY  114 (119)
Q Consensus        83 ~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~  114 (119)
                      +.+.+.+...  ..-+|||+. .+..+++.+.
T Consensus        92 ~~l~~~L~~~--~~LlVlDdv-~~~~~~~~l~  120 (287)
T PF00931_consen   92 DQLRELLKDK--RCLLVLDDV-WDEEDLEELR  120 (287)
T ss_dssp             HHHHHHHCCT--SEEEEEEEE--SHHHH----
T ss_pred             ccchhhhccc--cceeeeeee-cccccccccc
Confidence            7778888765  458899998 4555554443

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.95  E-value=9.9e-05  Score=55.65  Aligned_cols=38  Identities=18%  Similarity=0.168  Sum_probs=30.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLRAEV   56 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~~~~   56 (119)
                      .++|.|++|+|||+++++++..+       .+.+++..++..+..
T Consensus       138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~  182 (405)
T TIGR00362       138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV  182 (405)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH
Confidence            47999999999999999998753       356788887765543

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=97.95  E-value=1.8e-05  Score=55.56  Aligned_cols=35  Identities=20%  Similarity=0.221  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH---c--CccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK---Y--CVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~---~--~~~~is~~~   50 (119)
                      ++..++|.|+||||||++|..++..   .  .+.+++.++
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee   59 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE   59 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence            4668999999999999999877643   1  366776554

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.95  E-value=8.3e-05  Score=56.60  Aligned_cols=36  Identities=31%  Similarity=0.475  Sum_probs=27.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc-------CccccchhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGD   50 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~   50 (119)
                      ..+.+++|+||+|+||||++..||..+       .+.+++.|.
T Consensus       219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~  261 (424)
T PRK05703        219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT  261 (424)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence            335689999999999999988887543       355666665

>KOG3308|consensus

Probab=97.95  E-value=2.2e-05  Score=53.98  Aligned_cols=40  Identities=20%  Similarity=0.229  Sum_probs=33.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAE   55 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~   55 (119)
                      +...|.|.|.+.|||||||+.|.+.+ |+..|+-||+.+..
T Consensus         3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~   43 (225)
T KOG3308|consen    3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPE   43 (225)
T ss_pred             eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCch
Confidence            34677889999999999999999988 78889988887554

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.95  E-value=9.3e-06  Score=54.58  Aligned_cols=27  Identities=37%  Similarity=0.481  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ...++++||+|+|||.+|+.||+.+..
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~   29 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFV   29 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            457899999999999999999998774

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.95  E-value=9.2e-06  Score=61.95  Aligned_cols=31  Identities=35%  Similarity=0.515  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      .+..++|.||||+|||++|+++|...+..++
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi  246 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFL  246 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            4457999999999999999999998876554

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.94  E-value=1.1e-05  Score=58.74  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      ..|+|+||.|||||.+|-.||++ +..+||.|.
T Consensus         5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS   36 (300)
T PRK14729          5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDS   36 (300)
T ss_pred             cEEEEECCCccCHHHHHHHHHHh-CCcEEeccH
Confidence            47999999999999999999999 458888876

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.94  E-value=1.1e-05  Score=56.32  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..++..|.|.|++||||||+++.|+..+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45678899999999999999999998753

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.93  E-value=9.7e-06  Score=56.66  Aligned_cols=39  Identities=18%  Similarity=0.209  Sum_probs=28.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRA   54 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~~   54 (119)
                      .+..++|.|+||||||++|..++..     ..+.+++.++-.++
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~   67 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKS   67 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHH
Confidence            3557888999999999999999654     24666766543333

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.93  E-value=9.8e-06  Score=61.30  Aligned_cols=30  Identities=37%  Similarity=0.471  Sum_probs=25.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ..++|+||||+||||+|+.+++..+..++.
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~   66 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGATDAPFEA   66 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            478999999999999999999987655543

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.92  E-value=1e-05  Score=58.16  Aligned_cols=35  Identities=34%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML   52 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~   52 (119)
                      +-|+|+|.|||||||+|+.|++.+     .+.+++.+++.
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~   41 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG   41 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            468999999999999999999863     45667755554

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.91  E-value=1.1e-05  Score=59.30  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ..+|+|+|++||||||+++.|+..++..++
T Consensus       162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            568999999999999999999999887664

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK04328 hypothetical protein; Provisional

Probab=97.91  E-value=2.6e-05  Score=55.27  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~   50 (119)
                      ++..++|.|+||||||++|..++..     ..+.+++.++
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee   61 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE   61 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence            4668899999999999999887654     2356676643

>KOG0739|consensus

Probab=97.90  E-value=2.3e-05  Score=57.25  Aligned_cols=42  Identities=26%  Similarity=0.421  Sum_probs=34.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSSG   59 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~~   59 (119)
                      .-|++.||||.|||.+|++.|.+-+..++  |..||+.....+.
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES  210 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES  210 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence            35899999999999999999998875554  6678888877543

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.90  E-value=9.8e-06  Score=50.26  Aligned_cols=22  Identities=45%  Similarity=0.682  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~   41 (119)
                      |+|.|+||+|||++|+.|++.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999998754

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.89  E-value=0.00011  Score=52.78  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG   49 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~   49 (119)
                      ..++..|.++|++|+||||++..||..+   |  +.+++.|
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D  109 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD  109 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence            3456788899999999999999998754   3  4445554

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.89  E-value=5.8e-06  Score=53.10  Aligned_cols=28  Identities=32%  Similarity=0.458  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      +++|.|+||+|||++++.+|+..+..+.
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~   28 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFK   28 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCcee
Confidence            4789999999999999999998876554

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=97.89  E-value=9.9e-05  Score=56.42  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=31.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLRAEV   56 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~~~~   56 (119)
                      .++|.|++|+|||+++++++..+       .+.+++..+++.+..
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~  176 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV  176 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence            49999999999999999999863       467788888776654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.89  E-value=1.3e-05  Score=55.00  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      |..|+++||+|+||||.+.+||.++
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~   25 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARL   25 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHH
Confidence            4678999999999999999999765

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.89  E-value=1.1e-05  Score=56.15  Aligned_cols=25  Identities=32%  Similarity=0.575  Sum_probs=21.9

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .++..++|+||+||||||+.+.|..
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3567899999999999999999974

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.89  E-value=0.00011  Score=54.08  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=23.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..|.|+||+||||||++..||..+
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l  138 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKY  138 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            456789999999999999999998764

>KOG0731|consensus

Probab=97.88  E-value=9.7e-06  Score=65.03  Aligned_cols=40  Identities=30%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~   56 (119)
                      |.-++|+||||+|||-+|+++|.+-|++++++  .+++.-..
T Consensus       344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~  385 (774)
T KOG0731|consen  344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV  385 (774)
T ss_pred             cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence            44689999999999999999999999988865  45554443

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.88  E-value=4.6e-05  Score=53.97  Aligned_cols=26  Identities=23%  Similarity=0.216  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ...++|+|++||||||+++.++..+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            44689999999999999999998764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=1e-05  Score=64.31  Aligned_cols=40  Identities=30%  Similarity=0.432  Sum_probs=32.9

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRA   54 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~   54 (119)
                      -++++++++||||+|||++++.+|+.+|  ++.+|++-+-.+
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE  389 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE  389 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH
Confidence            4567999999999999999999999986  555677776444

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=97.88  E-value=8.2e-05  Score=56.88  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=30.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLRAEV   56 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~~~~   56 (119)
                      .++|.|++|+|||+++++++.+.       .+.+++..++..+..
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~  194 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV  194 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence            48999999999999999999864       255778877765543

>KOG0727|consensus

Probab=97.88  E-value=9.7e-05  Score=52.99  Aligned_cols=47  Identities=21%  Similarity=0.417  Sum_probs=36.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhcCCc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSSGSN   61 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~~~~   61 (119)
                      ..|.-+++.||||+|||.++++.|......+|  .-+++++.++.++..
T Consensus       187 dpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegpr  235 (408)
T KOG0727|consen  187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPR  235 (408)
T ss_pred             CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcH
Confidence            34556899999999999999999987755554  456788888876543

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=1.3e-05  Score=58.75  Aligned_cols=31  Identities=39%  Similarity=0.479  Sum_probs=27.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ..-+|+++||.|||||.+|+.||+.+++++-
T Consensus        96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFa  126 (408)
T COG1219          96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFA  126 (408)
T ss_pred             eeccEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence            3458999999999999999999999887765

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=1.3e-05  Score=61.79  Aligned_cols=41  Identities=29%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchh--HHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG--DMLRAEV   56 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~--~l~~~~~   56 (119)
                      .+..+++.||||+|||.+|+++|...+..+++++  +++...+
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~v  317 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWV  317 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcccc
Confidence            3447999999999999999999997777666543  4544433

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.87  E-value=2e-05  Score=57.52  Aligned_cols=34  Identities=26%  Similarity=0.591  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDML   52 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l~   52 (119)
                      .++|.||||+||||+|+.+++.+.       +.+++..++.
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~   78 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF   78 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence            589999999999999999998763       3456665543

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.87  E-value=1.5e-05  Score=62.01  Aligned_cols=30  Identities=30%  Similarity=0.377  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ..++|+||+||||||..+.||+++|+.+..
T Consensus        46 ~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   46 RILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            367889999999999999999999876653

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=97.87  E-value=1.8e-05  Score=50.61  Aligned_cols=29  Identities=21%  Similarity=0.252  Sum_probs=26.6

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +-|++|+.+.+.|++|+|||.+++.||+.
T Consensus        48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~   76 (127)
T PF06309_consen   48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEH   76 (127)
T ss_pred             CCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence            46788999999999999999999999986

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.87  E-value=0.00014  Score=58.77  Aligned_cols=33  Identities=36%  Similarity=0.445  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      ..++|.||||+||||+|+.+++..+..++.++.
T Consensus        53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna   85 (725)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNA   85 (725)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence            478999999999999999999988766655544

>PF13245 AAA_19: Part of AAA domain

Probab=97.87  E-value=1.9e-05  Score=46.19  Aligned_cols=22  Identities=41%  Similarity=0.643  Sum_probs=15.6

Q ss_pred             ceEEEEcCCCCCHHHH-HHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQ-APLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstl-a~~la~   39 (119)
                      ..++|.|+||||||++ +..++.
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i~~   33 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARIAE   33 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            3466799999999954 444443

>CHL00176 ftsH cell division protein; Validated

Probab=97.86  E-value=1.5e-05  Score=63.31  Aligned_cols=36  Identities=31%  Similarity=0.466  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccc--hhHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS--TGDML   52 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is--~~~l~   52 (119)
                      +..++|.||||+|||++|+++|.+.++.++.  ..++.
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~  253 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV  253 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH
Confidence            4569999999999999999999998866654  44443

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.85  E-value=1.9e-05  Score=55.11  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=29.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA   54 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~   54 (119)
                      .+.+..++|.|+||+||||+|+.++.  ...+++.+.....
T Consensus         9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~   47 (220)
T TIGR01618         9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKV   47 (220)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchh
Confidence            44467799999999999999999973  3556666654333

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.85  E-value=1.6e-05  Score=57.38  Aligned_cols=28  Identities=39%  Similarity=0.599  Sum_probs=25.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      -++++.||||-||||+|..+|.++|...
T Consensus        53 DHvLl~GPPGlGKTTLA~IIA~Emgvn~   80 (332)
T COG2255          53 DHVLLFGPPGLGKTTLAHIIANELGVNL   80 (332)
T ss_pred             CeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence            4799999999999999999999987653

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.84  E-value=1.5e-05  Score=64.22  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccc--hhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS--TGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is--~~~l~~~~   55 (119)
                      +..|+|.||||||||++|+++|...+..+++  ..+++...
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~  527 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW  527 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence            4568999999999999999999998766654  44555443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.84  E-value=4e-05  Score=53.26  Aligned_cols=35  Identities=31%  Similarity=0.375  Sum_probs=26.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~   50 (119)
                      .+..++|.|+||+|||+++..++..     .++.+++..+
T Consensus        19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~   58 (229)
T TIGR03881        19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE   58 (229)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            4568899999999999999887642     1355666543

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.83  E-value=1.6e-05  Score=60.28  Aligned_cols=38  Identities=21%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML   52 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~   52 (119)
                      ..+..|.|.|++||||||+++.|...+     ....|++|++.
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            356889999999999999999997654     25567777765

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.82  E-value=1.8e-05  Score=51.71  Aligned_cols=23  Identities=39%  Similarity=0.622  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|+.|||||||+++|...
T Consensus         2 krimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCC
Confidence            58999999999999999999764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.82  E-value=2.2e-05  Score=48.77  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +|+|+|++||||||+.+.|+...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998654

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG0738|consensus

Probab=97.81  E-value=1.6e-05  Score=59.67  Aligned_cols=31  Identities=26%  Similarity=0.519  Sum_probs=27.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      -|+++||||+|||-+|+++|.+.+..++++.
T Consensus       247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVS  277 (491)
T KOG0738|consen  247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVS  277 (491)
T ss_pred             eeeeeCCCCCcHHHHHHHHHHhhcCeEEEec
Confidence            4899999999999999999999997777554

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.81  E-value=1.4e-05  Score=57.41  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=27.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc---CccccchhHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDML   52 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~   52 (119)
                      |.|+|++||||||+++.|+..+   +..+++.|++.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~   37 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH   37 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence            7899999999999999999765   45577777653

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03689 pup_AAA proteasome ATPase

Probab=97.81  E-value=1.9e-05  Score=61.28  Aligned_cols=27  Identities=33%  Similarity=0.507  Sum_probs=23.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      +..++|.||||+|||++|+++|..++.
T Consensus       216 p~GILLyGPPGTGKT~LAKAlA~eL~~  242 (512)
T TIGR03689       216 PKGVLLYGPPGCGKTLIAKAVANSLAQ  242 (512)
T ss_pred             CcceEEECCCCCcHHHHHHHHHHhhcc
Confidence            456999999999999999999998643

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.80  E-value=1.3e-05  Score=57.45  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=28.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLR   53 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~   53 (119)
                      .|.|+|++||||||+++++++.++     +.+++.|+.-+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            378999999999999999998663     45677776655

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>KOG0651|consensus

Probab=97.80  E-value=4.4e-05  Score=55.84  Aligned_cols=46  Identities=24%  Similarity=0.333  Sum_probs=36.9

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHhc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVSS   58 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~~   58 (119)
                      -.+.|..++|.||||.|||.+|++++...|+.++  +.+.++...+.+
T Consensus       162 gIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGE  209 (388)
T KOG0651|consen  162 GIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGE  209 (388)
T ss_pred             CCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhccc
Confidence            3455677899999999999999999999987654  667777776643

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=97.80  E-value=7.9e-05  Score=55.06  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..++|.|+||+|||++++.+++.
T Consensus        39 ~~~~i~I~G~~GtGKT~l~~~~~~~   63 (365)
T TIGR02928        39 RPSNVFIYGKTGTGKTAVTKYVMKE   63 (365)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            4467999999999999999999865

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG4639 Predicted kinase [General function prediction only]

Probab=97.80  E-value=0.00025  Score=47.06  Aligned_cols=36  Identities=31%  Similarity=0.205  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      .-+++.|.|||||||+|+..-  .....++++++-...
T Consensus         3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~l   38 (168)
T COG4639           3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLL   38 (168)
T ss_pred             eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHh
Confidence            357899999999999998632  367888888875544

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=97.78  E-value=0.00035  Score=53.59  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=30.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEV   56 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~   56 (119)
                      -++|.|++|+||||++++++..+     .+.+++.+++.....
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~  185 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLV  185 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHH
Confidence            48999999999999999999753     456778777665443

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.78  E-value=2.1e-05  Score=63.40  Aligned_cols=37  Identities=24%  Similarity=0.444  Sum_probs=29.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~   52 (119)
                      .+..++|.||||+|||++++++|..++..++  +..+++
T Consensus       211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~  249 (733)
T TIGR01243       211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIM  249 (733)
T ss_pred             CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHh
Confidence            3457999999999999999999999876554  434443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.78  E-value=2e-05  Score=62.04  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=30.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDM   51 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l   51 (119)
                      ....|.|.|++||||||+|+.|+..+ +...+++|+.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            45688999999999999999999887 4557777765

>KOG0736|consensus

Probab=97.78  E-value=0.00013  Score=58.83  Aligned_cols=40  Identities=33%  Similarity=0.503  Sum_probs=34.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchh--HHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG--DMLRAEVS   57 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~--~l~~~~~~   57 (119)
                      --|++.||||+|||-+|+++|.++++.++|+.  +|+.-++.
T Consensus       706 SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVG  747 (953)
T KOG0736|consen  706 SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVG  747 (953)
T ss_pred             ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhc
Confidence            35999999999999999999999999998874  67776664

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.77  E-value=3.6e-05  Score=55.83  Aligned_cols=29  Identities=17%  Similarity=0.170  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ...|+|+|++||||||+++.|++ .|+..+
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~   34 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALED-LGYYCV   34 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHH-cCCeEE
Confidence            45799999999999999999964 465554

>PRK08727 hypothetical protein; Validated

Probab=97.77  E-value=3.9e-05  Score=53.86  Aligned_cols=35  Identities=23%  Similarity=0.201  Sum_probs=27.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLR   53 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~~   53 (119)
                      -++|.|++|+|||+++++++..     +.+.++++.++..
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~   82 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG   82 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh
Confidence            3899999999999999998654     2346777766553

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.77  E-value=2.1e-05  Score=58.10  Aligned_cols=32  Identities=34%  Similarity=0.589  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      .+..++|+||+||||||+.+.||   |+.-.+-++
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IA---GLe~~~~G~   59 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIA---GLEEPTSGE   59 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh---CCCCCCCce
Confidence            45678999999999999999999   444444433

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=97.77  E-value=4.1e-05  Score=53.33  Aligned_cols=39  Identities=28%  Similarity=0.369  Sum_probs=31.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhH-------cCccccchhHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKK-------YCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~-------~~~~~is~~~l~~~~~~   57 (119)
                      -++|.|++|+|||++.++++.+       ..+.|++..++......
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~   81 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFAD   81 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHH
Confidence            4799999999999999999864       24678888888776543

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.77  E-value=2.6e-05  Score=52.96  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..++|+||+|+||||++++|-+..
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            56789999999999999999998764

>PLN03025 replication factor C subunit; Provisional

Probab=97.76  E-value=3e-05  Score=56.75  Aligned_cols=24  Identities=46%  Similarity=0.693  Sum_probs=21.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +.++|.||||+||||+|+.+|+.+
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHH
Confidence            458999999999999999999886

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.75  E-value=2.6e-05  Score=51.94  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=18.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+..++|+|++|+|||++.+.+.+.+
T Consensus        21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   21 SGSPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             S-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3445789999999999999999887654

>KOG0737|consensus

Probab=97.74  E-value=2.3e-05  Score=58.17  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=34.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEV   56 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~   56 (119)
                      -..+..|++.||||+|||-+|+++|++-|..++++  +.+....+
T Consensus       124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf  168 (386)
T KOG0737|consen  124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF  168 (386)
T ss_pred             ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH
Confidence            34566799999999999999999999998877654  45555544

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.74  E-value=4.2e-05  Score=51.60  Aligned_cols=25  Identities=36%  Similarity=0.631  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..|+|+||+||||+|+++.|.+.+
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~   26 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEF   26 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhc
Confidence            4568999999999999999998764

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.73  E-value=0.00023  Score=49.47  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=22.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ......+.|.|+||||||++|..++.
T Consensus        16 i~~g~i~~i~G~~GsGKT~l~~~l~~   41 (235)
T cd01123          16 IETGSITEIFGEFGSGKTQLCHQLAV   41 (235)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567889999999999999999974

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.73  E-value=3.8e-05  Score=59.15  Aligned_cols=26  Identities=38%  Similarity=0.534  Sum_probs=23.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..++++||||+||||+|+.+|+.+++
T Consensus        37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         37 HAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            45899999999999999999998765

>CHL00206 ycf2 Ycf2; Provisional

Probab=97.73  E-value=2.7e-05  Score=67.66  Aligned_cols=39  Identities=18%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR   53 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~   53 (119)
                      ..+.-|+++||||+|||.+|+++|.+.++.++  +..+++.
T Consensus      1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            44567999999999999999999999887665  6667774

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.72  E-value=4e-05  Score=47.77  Aligned_cols=22  Identities=27%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFA   38 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la   38 (119)
                      ...+.|.|++||||||+++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            4678999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.72  E-value=5e-05  Score=54.82  Aligned_cols=39  Identities=28%  Similarity=0.400  Sum_probs=29.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHc-------CccccchhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGD   50 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~   50 (119)
                      ++...+..|+|+||+||||||++..|+..+       .+.+++.|.
T Consensus       189 ~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~  234 (282)
T TIGR03499       189 EILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT  234 (282)
T ss_pred             cccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence            344467789999999999999999998644       244566664

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.71  E-value=3.1e-05  Score=50.15  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=26.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      .++|+|+||+||||++..++...     .+.+++.+....
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~   40 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE   40 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence            36899999999999999998764     355666654433

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.71  E-value=1.8e-05  Score=52.99  Aligned_cols=31  Identities=29%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD   50 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~-----~~~~is~~~   50 (119)
                      ++|.|+||+|||+++..++...     .+.++++++
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~   37 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE   37 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            7899999999999999886542     466777643

A related protein is found in archaea.

>KOG2004|consensus

Probab=97.71  E-value=2.5e-05  Score=62.35  Aligned_cols=41  Identities=29%  Similarity=0.454  Sum_probs=33.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRA   54 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~   54 (119)
                      .-.+.+++++||||+|||.+++.+|+.+|  +..+|++-+-..
T Consensus       435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDv  477 (906)
T KOG2004|consen  435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDV  477 (906)
T ss_pred             cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccH
Confidence            34578999999999999999999999987  455677765443

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=97.70  E-value=7.4e-05  Score=57.71  Aligned_cols=40  Identities=15%  Similarity=0.215  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh----Hc--CccccchhHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK----KY--CVCHLSTGDMLRAE   55 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~----~~--~~~~is~~~l~~~~   55 (119)
                      +...++|.|+||||||++|..++.    ++  .+.+++..+-..+.
T Consensus        20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l   65 (484)
T TIGR02655        20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDI   65 (484)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHH
Confidence            456789999999999999999843    22  46677665433333

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG1969|consensus

Probab=97.70  E-value=4e-05  Score=61.25  Aligned_cols=32  Identities=34%  Similarity=0.416  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      ....+++||||.||||+|+.+|+.-|+.++.+
T Consensus       326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEI  357 (877)
T KOG1969|consen  326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI  357 (877)
T ss_pred             cceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence            34678999999999999999999988888755

>TIGR00763 lon ATP-dependent protease La

Probab=97.70  E-value=3.2e-05  Score=62.76  Aligned_cols=30  Identities=33%  Similarity=0.452  Sum_probs=25.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      +..++++||||+|||++|+.||+.++..++
T Consensus       347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~  376 (775)
T TIGR00763       347 GPILCLVGPPGVGKTSLGKSIAKALNRKFV  376 (775)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence            347999999999999999999999875554

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=97.69  E-value=3.6e-05  Score=54.86  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=22.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..+|-|+|+||+||||+...|...|
T Consensus        26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   26 TGRAHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             TT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            3467899999999999999999998764

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.69  E-value=0.00018  Score=49.76  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=22.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....+.|.|+||||||++|..++..
T Consensus        17 ~~g~v~~I~G~~GsGKT~l~~~ia~~   42 (226)
T cd01393          17 PTGRITEIFGEFGSGKTQLCLQLAVE   42 (226)
T ss_pred             cCCcEEEEeCCCCCChhHHHHHHHHH
Confidence            34668899999999999999999754

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A

Probab=97.69  E-value=3.7e-05  Score=51.89  Aligned_cols=38  Identities=16%  Similarity=0.112  Sum_probs=29.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      +|.|.+..|||++++|+.||+++|+.+++- +++.+...
T Consensus         1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~   38 (179)
T PF13189_consen    1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAK   38 (179)
T ss_dssp             EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT-
T ss_pred             CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHH
Confidence            478999999999999999999999999998 77777664

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.69  E-value=0.00029  Score=54.06  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=31.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhH-------cCccccchhHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKK-------YCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~-------~~~~~is~~~l~~~~~~   57 (119)
                      .++|.|++|+|||+++++++..       ..+.+++..+++.....
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~  188 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVD  188 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence            3899999999999999999873       34568888888777553

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.69  E-value=4.7e-05  Score=56.23  Aligned_cols=28  Identities=21%  Similarity=0.322  Sum_probs=24.0

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..++.+|.|+|+|||||||++..|...+
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l   80 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHL   80 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567899999999999999999887654

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.68  E-value=0.00011  Score=54.79  Aligned_cols=26  Identities=31%  Similarity=0.618  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..++|+|+||+|||++++.+++.+
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~~l   79 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFEEL   79 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            44678999999999999999998754

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.68  E-value=4.3e-05  Score=52.35  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .|+|+||+||||||+...+...+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999887765

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.68  E-value=5.8e-05  Score=48.17  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=24.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +....|++.|.-||||||+++.+++.+|+.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            345689999999999999999999988764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.68  E-value=4.5e-05  Score=51.57  Aligned_cols=25  Identities=32%  Similarity=0.506  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +++..|.|+||+||||||+.+.+|.
T Consensus        27 ~~Ge~iaitGPSG~GKStllk~va~   51 (223)
T COG4619          27 RAGEFIAITGPSGCGKSTLLKIVAS   51 (223)
T ss_pred             cCCceEEEeCCCCccHHHHHHHHHh
Confidence            3467899999999999999999985

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.67  E-value=5e-05  Score=56.59  Aligned_cols=27  Identities=37%  Similarity=0.366  Sum_probs=23.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      +..++|+||+|+||||+|+.+|+.+++
T Consensus        38 ~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         38 HHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            345799999999999999999998764

>PRK13695 putative NTPase; Provisional

Probab=97.67  E-value=4.8e-05  Score=50.86  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++|+|+|++||||||+++.++..+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            479999999999999999987654

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.67  E-value=1.9e-05  Score=58.89  Aligned_cols=40  Identities=35%  Similarity=0.590  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC--c--cccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC--V--CHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~--~--~~is~~~l~~~~~   56 (119)
                      +..|+|.||||+|||.+|-.+|+++|  +  ..++..++...+.
T Consensus        50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~   93 (398)
T PF06068_consen   50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV   93 (398)
T ss_dssp             T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence            46799999999999999999999986  3  3455555554443

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.65  E-value=5e-05  Score=61.51  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDM   51 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l   51 (119)
                      .++|+||||+|||++|+.||+.++..++  ++.+.
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~  524 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY  524 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence            6899999999999999999999875554  44443

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=97.65  E-value=8.2e-05  Score=56.55  Aligned_cols=45  Identities=18%  Similarity=0.194  Sum_probs=37.3

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH----cCccccchhHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK----YCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~----~~~~~is~~~l~~~~~~   57 (119)
                      +|-....+++++||+|+|||+++..++..    .| .++++.+|+.+...
T Consensus       204 ~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~T~a~Lf~~L~~  252 (449)
T TIGR02688       204 PLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG-GTITVAKLFYNIST  252 (449)
T ss_pred             HHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-CcCcHHHHHHHHHH
Confidence            45667789999999999999999998776    24 77888888888765

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=97.65  E-value=3.9e-05  Score=56.94  Aligned_cols=24  Identities=42%  Similarity=0.599  Sum_probs=21.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|+||+||||||+.+.||-
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            446788999999999999999993

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.65  E-value=8.8e-05  Score=56.75  Aligned_cols=26  Identities=42%  Similarity=0.488  Sum_probs=23.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ...|++.|+||+|||++|+.+|..++
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            45799999999999999999998764

>TIGR00101 ureG urease accessory protein UreG

Probab=97.65  E-value=5.9e-05  Score=51.83  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      |.+|.|+|++||||||+.+.+...+
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l   25 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRAL   25 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4579999999999999999988764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG3877|consensus

Probab=97.65  E-value=5.3e-05  Score=54.69  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=35.7

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccc---hhHHHH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS---TGDMLR   53 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is---~~~l~~   53 (119)
                      .|..++..|++-|+.|||||++|+.||+++|+.|+-   +|++.-
T Consensus        66 rf~enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv  110 (393)
T KOG3877|consen   66 RFHENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV  110 (393)
T ss_pred             hhcccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence            567778899999999999999999999999988874   555543

>KOG0635|consensus

Probab=97.64  E-value=5.7e-05  Score=50.06  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=30.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc---C-ccccchhHHHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---C-VCHLSTGDMLRAEV   56 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~---~-~~~is~~~l~~~~~   56 (119)
                      -.++..|+|+|.+||||||+|.+|.+.+   | ..|+--+|-++.-+
T Consensus        28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL   74 (207)
T KOG0635|consen   28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL   74 (207)
T ss_pred             cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence            3456789999999999999999999864   2 33433344444433

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=97.64  E-value=4.2e-05  Score=58.44  Aligned_cols=26  Identities=35%  Similarity=0.588  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..-|+|.|+||+||||+|++||+-|
T Consensus       262 raeGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         262 RAEGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             hhcceEEecCCCCChhHHHHHHHHHH
Confidence            44569999999999999999999866

>KOG0729|consensus

Probab=97.63  E-value=0.00011  Score=53.13  Aligned_cols=47  Identities=26%  Similarity=0.534  Sum_probs=37.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccch--hHHHHHHHhcCCcH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST--GDMLRAEVSSGSNL   62 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~--~~l~~~~~~~~~~~   62 (119)
                      .|.-|++.||||+|||.+|++.|.+.+..+|.+  ++|++.+..++...
T Consensus       210 ppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarm  258 (435)
T KOG0729|consen  210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARM  258 (435)
T ss_pred             CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHH
Confidence            345689999999999999999999998777644  57888887665443

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.63  E-value=6.4e-05  Score=56.31  Aligned_cols=29  Identities=31%  Similarity=0.445  Sum_probs=24.7

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+......++|+||+|+||||++.+|+..
T Consensus       132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        132 ALMERGGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34556778999999999999999999875

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.63  E-value=6.6e-05  Score=50.85  Aligned_cols=26  Identities=27%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ....++|+|++||||||+.+.|+...
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45689999999999999999998754

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=97.62  E-value=6.4e-05  Score=58.40  Aligned_cols=29  Identities=31%  Similarity=0.322  Sum_probs=25.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      +..++++||+|+||||+|+.+|+.+++..
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~   71 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA   71 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence            45689999999999999999999987753

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.62  E-value=6.3e-05  Score=53.18  Aligned_cols=24  Identities=42%  Similarity=0.617  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||+||||||+-+.+|-
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456789999999999999999994

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.62  E-value=9.1e-05  Score=41.68  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=19.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+.||||||+..++.-
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999988863

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.61  E-value=4.6e-05  Score=48.64  Aligned_cols=26  Identities=35%  Similarity=0.479  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+.++.|+|+.||||||+.+.|+..+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEEccCCCccccceeeecccc
Confidence            45689999999999999999998654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=97.61  E-value=5.8e-05  Score=52.17  Aligned_cols=23  Identities=35%  Similarity=0.632  Sum_probs=18.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+++.|+||+|||++|+.+..-
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~l   45 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSL   45 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHC
T ss_pred             CCeEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999874

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.61  E-value=6.8e-05  Score=50.56  Aligned_cols=26  Identities=15%  Similarity=-0.003  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|++||||||+++.|...+
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHH
Confidence            34578999999999999999998665

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.60  E-value=0.00015  Score=58.00  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~   55 (119)
                      ...++++|.||+||||+|+.|++.++     ..+++.++.-+..
T Consensus       215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~  258 (664)
T PTZ00322        215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRL  258 (664)
T ss_pred             ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhh
Confidence            45789999999999999999999874     4445555544444

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.60  E-value=6.7e-05  Score=52.95  Aligned_cols=24  Identities=42%  Similarity=0.544  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++.++-|+|++||||||+++.|+-
T Consensus        32 ~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          32 RGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhc
Confidence            456889999999999999999984

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.60  E-value=6.9e-05  Score=54.42  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..+++.|+||+||||+++.+++.++.
T Consensus        44 ~~lll~G~~G~GKT~la~~l~~~~~~   69 (316)
T PHA02544         44 NMLLHSPSPGTGKTTVAKALCNEVGA   69 (316)
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCc
Confidence            34556899999999999999988754

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=97.60  E-value=0.00036  Score=50.80  Aligned_cols=25  Identities=28%  Similarity=0.264  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+.|.|+||||||++|..++..
T Consensus        94 ~g~i~ei~G~~g~GKT~l~~~~~~~  118 (310)
T TIGR02236        94 TQAITEVFGEFGSGKTQICHQLAVN  118 (310)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3567889999999999999999855

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.59  E-value=7.2e-05  Score=51.39  Aligned_cols=25  Identities=40%  Similarity=0.639  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        26 ~G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          26 AGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568899999999999999999965

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.59  E-value=6.2e-05  Score=60.79  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=27.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCcc--ccchhHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVC--HLSTGDML   52 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~--~is~~~l~   52 (119)
                      .++++||+|+|||++|+.||+.++..  .++++++.
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~  521 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYM  521 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhh
Confidence            57899999999999999999998654  44555543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.59  E-value=7.4e-05  Score=52.34  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=21.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +++..+.|+||+||||||+...++-
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3456899999999999999999984

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.59  E-value=7.8e-05  Score=57.46  Aligned_cols=27  Identities=37%  Similarity=0.513  Sum_probs=24.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      ..++|+||+|+||||+|+.+|+.+++.
T Consensus        41 ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         41 HAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            358999999999999999999998764

>PF13479 AAA_24: AAA domain

Probab=97.59  E-value=5e-05  Score=52.58  Aligned_cols=32  Identities=31%  Similarity=0.513  Sum_probs=24.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      +++.+++|.|+||+||||+|..+-   +..+|+++
T Consensus         1 ~~~~~~lIyG~~G~GKTt~a~~~~---k~l~id~E   32 (213)
T PF13479_consen    1 KKPIKILIYGPPGSGKTTLAASLP---KPLFIDTE   32 (213)
T ss_pred             CCceEEEEECCCCCCHHHHHHhCC---CeEEEEeC
Confidence            357899999999999999999882   34455543

>COG4240 Predicted kinase [General function prediction only]

Probab=97.58  E-value=8.9e-05  Score=52.22  Aligned_cols=41  Identities=29%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh----Hc--CccccchhHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK----KY--CVCHLSTGDMLRAE   55 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~----~~--~~~~is~~~l~~~~   55 (119)
                      .+|+.+.|+||-||||||++..|-.    ++  ....+|+||+....
T Consensus        48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth   94 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH   94 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence            3578999999999999999987754    33  46678999987544

>cd04163 Era Era subfamily

Probab=97.58  E-value=7e-05  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|.++|++||||||++..+...
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            568999999999999999998754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.58  E-value=7.8e-05  Score=55.17  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=22.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++..|+++|++|+||||++..||..+
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l  164 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYL  164 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            346789999999999999888887653

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.58  E-value=7.7e-05  Score=48.55  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++|.|+|+.+|||||+++.|...+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999998764

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=97.58  E-value=8.6e-05  Score=48.91  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      ..-++|+|++|+||||+|..|.++ |..+++-|
T Consensus        14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD   45 (149)
T cd01918          14 GIGVLITGPSGIGKSELALELIKR-GHRLVADD   45 (149)
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECC
Confidence            456899999999999999988765 55555544

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.58  E-value=7.8e-05  Score=51.39  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+.++.|+|+.||||||+.+.|+..+
T Consensus        29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          29 KGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            45689999999999999999998643

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.58  E-value=6.8e-05  Score=58.99  Aligned_cols=27  Identities=30%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+...++++||||+||||+++.|++.+
T Consensus       101 ~~~~IL~LvGPpG~GKSsLa~~la~~l  127 (644)
T PRK15455        101 EKKQILYLLGPVGGGKSSLAERLKSLM  127 (644)
T ss_pred             CCCceEEEecCCCCCchHHHHHHHHHH
Confidence            345689999999999999999999864

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.57  E-value=7.6e-05  Score=46.41  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      +|+|+|.||+||||+...|..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999999986

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.57  E-value=8.3e-05  Score=50.30  Aligned_cols=25  Identities=32%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        17 ~Ge~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        17 RGEVLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>KOG0743|consensus

Probab=97.57  E-value=4.9e-05  Score=57.70  Aligned_cols=30  Identities=27%  Similarity=0.400  Sum_probs=25.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      -.++.||||+|||++..++|..+++.++++
T Consensus       237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydL  266 (457)
T KOG0743|consen  237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDL  266 (457)
T ss_pred             cceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence            468999999999999999999887766544

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.57  E-value=0.00011  Score=56.92  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=26.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGD   50 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~   50 (119)
                      +..++|.|+||+|||+++..++..     ..+.+++..+
T Consensus       273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~  311 (509)
T PRK09302        273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE  311 (509)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence            457888999999999999988754     2566776543

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.57  E-value=8.2e-05  Score=51.26  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        28 KGEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

>TIGR00416 sms DNA repair protein RadA

Probab=97.56  E-value=0.00018  Score=55.28  Aligned_cols=38  Identities=29%  Similarity=0.301  Sum_probs=28.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRA   54 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~   54 (119)
                      ...++|.|.||+||||++..++...     .+.|++..+-..+
T Consensus        94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~q  136 (454)
T TIGR00416        94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQ  136 (454)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHH
Confidence            4578999999999999999887643     3567777654444

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>COG3911 Predicted ATPase [General function prediction only]

Probab=97.56  E-value=8.7e-05  Score=49.00  Aligned_cols=40  Identities=28%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccch-hHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST-GDMLRAEVS   57 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~-~~l~~~~~~   57 (119)
                      .+++|+|.||+||||+..+|+++--..+--. -+++.++..
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~~Gfatvee~~r~ii~~es~   50 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALARAGFATVEEAGRDIIALESA   50 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHcCceeeccchhhHHHHHHh
Confidence            5788999999999999999987633333332 345555544

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=8.1e-05  Score=55.14  Aligned_cols=42  Identities=29%  Similarity=0.384  Sum_probs=32.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc---------------chhHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL---------------STGDMLRAEVS   57 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i---------------s~~~l~~~~~~   57 (119)
                      -|.+|+++||.|+|||.+|++||+--+.+++               +++.++|++..
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve  105 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVE  105 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHH
Confidence            3578999999999999999999986554444               55667776653

>cd04155 Arl3 Arl3 subfamily

Probab=97.56  E-value=8.9e-05  Score=48.85  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|++||||||+.+.+...
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcC
Confidence            3678999999999999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.56  E-value=7.2e-05  Score=60.85  Aligned_cols=31  Identities=32%  Similarity=0.398  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ++..++|+||||+||||+++.+|+.++..++
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~  378 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYV  378 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            4557999999999999999999998876553

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.55  E-value=8.8e-05  Score=50.99  Aligned_cols=26  Identities=35%  Similarity=0.468  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.++.|+|+.||||||+.+.|+..
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999999864

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=97.55  E-value=5.9e-05  Score=56.12  Aligned_cols=41  Identities=29%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC----ccccchhHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC----VCHLSTGDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~----~~~is~~~l~~~~~~   57 (119)
                      +.-|++.||||+|||.+|-.+|+++|    +.-+|.+++...+.+
T Consensus        65 GrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~k  109 (450)
T COG1224          65 GRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVK  109 (450)
T ss_pred             ccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeeccc
Confidence            45699999999999999999999997    333455555544443

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=97.55  E-value=8.4e-05  Score=55.55  Aligned_cols=29  Identities=21%  Similarity=0.236  Sum_probs=25.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..++..|.|+|.+||||||+++.|.+++.
T Consensus         2 ~~~~~~i~i~G~~gsGKTTl~~~l~~~l~   30 (369)
T PRK14490          2 LFHPFEIAFCGYSGSGKTTLITALVRRLS   30 (369)
T ss_pred             CCCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence            35678899999999999999999988764

>KOG0989|consensus

Probab=97.55  E-value=0.00022  Score=52.09  Aligned_cols=41  Identities=27%  Similarity=0.396  Sum_probs=31.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      +..++.++.||||.|||+.|.++|+.++....-...++...
T Consensus        55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln   95 (346)
T KOG0989|consen   55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN   95 (346)
T ss_pred             cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc
Confidence            35568999999999999999999999877555544444333

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.54  E-value=9.5e-05  Score=50.73  Aligned_cols=25  Identities=36%  Similarity=0.442  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269          25 KGEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999954

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.54  E-value=9.8e-05  Score=50.73  Aligned_cols=26  Identities=38%  Similarity=0.607  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .++.++.|+|+.||||||+.+.|+..
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999999964

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.54  E-value=9.6e-05  Score=51.61  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          25 RGEILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.53  E-value=0.00011  Score=52.01  Aligned_cols=29  Identities=24%  Similarity=0.258  Sum_probs=24.1

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +.-+.+.+++|+|++||||||++..|-..
T Consensus         8 ~l~~~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen    8 SLLKDPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             HhcCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            44566789999999999999988887654

This is thought to be an ATPase involved in viral DNA packaging [].

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=97.53  E-value=8.1e-05  Score=54.69  Aligned_cols=29  Identities=31%  Similarity=0.468  Sum_probs=25.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ..++|.|+||+|||++++.+|+.++..++
T Consensus        44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~   72 (329)
T COG0714          44 GHVLLEGPPGVGKTLLARALARALGLPFV   72 (329)
T ss_pred             CCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence            46899999999999999999999875443

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.53  E-value=0.0001  Score=50.60  Aligned_cols=25  Identities=36%  Similarity=0.571  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        26 ~G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          26 KGEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.53  E-value=0.00012  Score=54.91  Aligned_cols=35  Identities=29%  Similarity=0.318  Sum_probs=26.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDM   51 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l   51 (119)
                      ...++|.|+||+||||++..++..+     .+.|++..+-
T Consensus        82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs  121 (372)
T cd01121          82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES  121 (372)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence            4578999999999999999988653     3556666543

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.53  E-value=0.0001  Score=50.09  Aligned_cols=25  Identities=20%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541         25 PSAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.52  E-value=8.9e-05  Score=51.70  Aligned_cols=25  Identities=36%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219          25 PGEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999854

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.52  E-value=0.0001  Score=50.86  Aligned_cols=25  Identities=32%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263          27 KGEIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999954

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.52  E-value=0.00017  Score=49.97  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=27.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML   52 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~   52 (119)
                      +..++|.|+||+|||++|..++...     .+.++++.+-.
T Consensus        16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~   56 (224)
T TIGR03880        16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEERE   56 (224)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCH
Confidence            5678899999999999999887542     35566665433

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.52  E-value=0.0001  Score=51.51  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256          26 PGEFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=97.52  E-value=0.0001  Score=53.57  Aligned_cols=30  Identities=20%  Similarity=0.328  Sum_probs=25.9

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +...++.+|-|+|+||+||||+...|..+|
T Consensus        46 p~tG~a~viGITG~PGaGKSTli~~L~~~l   75 (323)
T COG1703          46 PRTGNAHVIGITGVPGAGKSTLIEALGREL   75 (323)
T ss_pred             hcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence            445677899999999999999999998865

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.52  E-value=0.00011  Score=50.57  Aligned_cols=25  Identities=44%  Similarity=0.543  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259          25 PGEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0991|consensus

Probab=97.52  E-value=9.1e-05  Score=52.48  Aligned_cols=28  Identities=39%  Similarity=0.613  Sum_probs=24.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ....++++|.||||+||||-+..||.++
T Consensus        45 ~gnmP~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991|consen   45 EGNMPNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence            3456789999999999999999999864

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.51  E-value=0.00012  Score=52.12  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=24.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .++.++.|+|++|+||||+++.++....
T Consensus        14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128          14 GKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            4678999999999999999999997653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.51  E-value=0.0001  Score=50.95  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224          25 EGEIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999854

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.51  E-value=0.00011  Score=50.79  Aligned_cols=25  Identities=32%  Similarity=0.457  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|+|+.||||||+.+.|+..
T Consensus        30 ~G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211        30 KGEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.51  E-value=0.00011  Score=51.52  Aligned_cols=25  Identities=28%  Similarity=0.504  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315        27 PGEFVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.51  E-value=0.00011  Score=50.39  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|+|+.||||||+.+.|+-.
T Consensus        25 ~G~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262          25 KGEVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.51  E-value=9.1e-05  Score=59.09  Aligned_cols=31  Identities=29%  Similarity=0.475  Sum_probs=26.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      ..|+|+|+||+|||++++.++.+.++.++.+
T Consensus       186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~i  216 (644)
T PRK10733        186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI  216 (644)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            3599999999999999999999988766543

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.51  E-value=0.00011  Score=51.19  Aligned_cols=27  Identities=22%  Similarity=0.220  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+.++.|+|+.||||||+.+.|+..+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345689999999999999999998653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=97.51  E-value=0.00016  Score=52.93  Aligned_cols=25  Identities=28%  Similarity=0.226  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+||||||++|..++-.
T Consensus       101 ~g~vtei~G~~GsGKT~l~~~~~~~  125 (317)
T PRK04301        101 TQSITEFYGEFGSGKTQICHQLAVN  125 (317)
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHH
Confidence            4567889999999999999999854

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.51  E-value=0.00011  Score=56.83  Aligned_cols=28  Identities=25%  Similarity=0.324  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +..++++||+|+||||+|+.+|+.+++.
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            4569999999999999999999977653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.51  E-value=0.00011  Score=51.29  Aligned_cols=25  Identities=32%  Similarity=0.452  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629         34 EGEMMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.51  E-value=0.00011  Score=50.21  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        23 ~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        23 KGKMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999964

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.50  E-value=0.00011  Score=50.24  Aligned_cols=25  Identities=36%  Similarity=0.425  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          25 AGEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.50  E-value=7.1e-05  Score=53.17  Aligned_cols=37  Identities=32%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDM   51 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l   51 (119)
                      ++...++|.|+||||||+++..++.+.     .+.++++++-
T Consensus        21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~   62 (260)
T COG0467          21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES   62 (260)
T ss_pred             cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            345689999999999999999987652     3667766543

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.50  E-value=0.00012  Score=50.85  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          25 KGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            45789999999999999999998654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.50  E-value=0.00012  Score=49.02  Aligned_cols=25  Identities=40%  Similarity=0.567  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+++.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247          27 QGEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568899999999999999999864

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.49  E-value=0.00013  Score=49.04  Aligned_cols=25  Identities=44%  Similarity=0.546  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          25 AGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.49  E-value=0.0001  Score=50.64  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235          24 PGEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4568999999999999999999864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.49  E-value=0.00012  Score=51.30  Aligned_cols=25  Identities=48%  Similarity=0.609  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296          27 SGELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.49  E-value=0.00011  Score=50.49  Aligned_cols=22  Identities=41%  Similarity=0.505  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.|+|+.||||||+.+.|+..
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            8899999999999999999953

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.49  E-value=0.00012  Score=51.15  Aligned_cols=25  Identities=40%  Similarity=0.619  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864        26 PGEFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999854

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=97.49  E-value=0.0001  Score=49.20  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=27.9

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      .|.....|.|+|+-.||||||+++||..+|-
T Consensus         4 rp~F~K~VailG~ESsGKStLv~kLA~~fnt   34 (187)
T COG3172           4 RPFFVKTVAILGGESSGKSTLVNKLANIFNT   34 (187)
T ss_pred             chhhheeeeeecCcccChHHHHHHHHHHhCC
Confidence            4667789999999999999999999998875

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.49  E-value=0.00014  Score=55.65  Aligned_cols=38  Identities=26%  Similarity=0.287  Sum_probs=28.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRA   54 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~   54 (119)
                      ...++|.|+||+||||++..++...     .+.|++..+-..+
T Consensus        80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~q  122 (446)
T PRK11823         80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQ  122 (446)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHH
Confidence            4578999999999999999998643     4567776554443

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.49  E-value=0.00011  Score=50.76  Aligned_cols=25  Identities=36%  Similarity=0.533  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        29 ~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293          29 EGEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.49  E-value=0.00013  Score=55.76  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc----C--ccccchh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLSTG   49 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~~   49 (119)
                      .++..|+++|++||||||++..||..+    |  +.+++.|
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D  138 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD  138 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence            346788999999999999888887643    3  4456665

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.49  E-value=0.00096  Score=49.21  Aligned_cols=38  Identities=26%  Similarity=0.270  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      +...+.|.|+|||||||+|-.++...     .+.+|+...-+.
T Consensus        54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~   96 (325)
T cd00983          54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALD   96 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHH
Confidence            34567899999999999999987542     366777755433

RecA couples ATP hydrolysis to DNA strand exchange.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.48  E-value=0.00013  Score=50.48  Aligned_cols=25  Identities=36%  Similarity=0.495  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          25 RGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999964

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.48  E-value=0.00013  Score=50.77  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|+|+.||||||+.+.|+..
T Consensus        32 ~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247         32 AGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568899999999999999999853

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.48  E-value=0.00013  Score=53.03  Aligned_cols=27  Identities=22%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..|.|+|+|||||||++..++..+
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~   58 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMEL   58 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999988753

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.48  E-value=0.00012  Score=56.90  Aligned_cols=26  Identities=35%  Similarity=0.418  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..++|+||||+||||+|+.+|+.+.+
T Consensus        37 ha~Lf~GppGtGKTTlA~~lA~~l~c   62 (504)
T PRK14963         37 HAYLFSGPRGVGKTTTARLIAMAVNC   62 (504)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            44699999999999999999998754

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.48  E-value=0.00014  Score=48.41  Aligned_cols=25  Identities=28%  Similarity=0.492  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+++.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223          26 PGDRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.48  E-value=0.0001  Score=53.68  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...|+|+|++||||||++++|.+..
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i  156 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEI  156 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998764

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.47  E-value=0.00013  Score=51.11  Aligned_cols=26  Identities=35%  Similarity=0.532  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.++.|+|+.||||||+.+.|+..
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34568999999999999999999864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.47  E-value=0.00012  Score=51.63  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+.++.|+|++||||||+++.|+..+
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323        28 PGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45789999999999999999999653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.47  E-value=0.00013  Score=50.58  Aligned_cols=25  Identities=36%  Similarity=0.384  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257          30 KGETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.47  E-value=0.00014  Score=57.03  Aligned_cols=26  Identities=31%  Similarity=0.342  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..++|+||+|+||||+|+.+|+.+++
T Consensus        39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         39 HAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34789999999999999999998765

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.47  E-value=0.00017  Score=59.24  Aligned_cols=41  Identities=22%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             CCCCc-eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHH
Q psy9244          14 ESTGV-NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRA   54 (119)
Q Consensus        14 p~~~~-~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~   54 (119)
                      |.+|. .++++||+|+|||.+|+.||+.+     .+..+++.++...
T Consensus       592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~  638 (852)
T TIGR03345       592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA  638 (852)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh
Confidence            34454 57999999999999999999976     3456676665543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.47  E-value=0.00013  Score=50.76  Aligned_cols=25  Identities=28%  Similarity=0.307  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (230)
T TIGR03410        25 KGEVTCVLGRNGVGKTTLLKTLMGL   49 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999964

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.47  E-value=0.00013  Score=49.32  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +...++.|+|+.||||||+.+.|+..
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcC
Confidence            45678999999999999999999863

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.47  E-value=0.00014  Score=49.64  Aligned_cols=25  Identities=36%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|+|+.||||||+.+.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540         26 AGGLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5678999999999999999999864

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.46  E-value=0.00013  Score=51.49  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.++.|+|+.||||||+.+.|+..
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34568999999999999999999853

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.46  E-value=0.00011  Score=54.59  Aligned_cols=26  Identities=31%  Similarity=0.482  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+|+|+|++||||||+.++|....
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i  186 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAI  186 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHccc
Confidence            35689999999999999999998764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.46  E-value=0.00013  Score=51.71  Aligned_cols=25  Identities=40%  Similarity=0.570  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248         26 SGELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999854

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.46  E-value=0.00013  Score=51.16  Aligned_cols=25  Identities=32%  Similarity=0.559  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+++.|+..
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (241)
T PRK14250         28 GGAIYTIVGPSGAGKSTLIKLINRL   52 (241)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.46  E-value=0.00014  Score=54.91  Aligned_cols=28  Identities=39%  Similarity=0.440  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +..++|.||||+||||+|+.+|+.+.+.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3458899999999999999999988763

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.46  E-value=0.00011  Score=59.36  Aligned_cols=25  Identities=36%  Similarity=0.506  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+++|+|+||+|||++++.||++.
T Consensus       203 ~~n~lL~G~pG~GKT~l~~~la~~~  227 (731)
T TIGR02639       203 KNNPLLVGEPGVGKTAIAEGLALRI  227 (731)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999875

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.46  E-value=0.00014  Score=58.00  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=24.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +..++|+||+|+||||+|+.+|+.+++.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3567999999999999999999998764

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.46  E-value=0.00014  Score=50.00  Aligned_cols=28  Identities=25%  Similarity=0.280  Sum_probs=24.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +...++|.|+|++||||||+...+.+.+
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~   46 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNL   46 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4457789999999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.46  E-value=0.00013  Score=49.58  Aligned_cols=25  Identities=32%  Similarity=0.500  Sum_probs=22.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+.++.|+|++||||||+.+.|+-
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3456889999999999999999994

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.46  E-value=0.00014  Score=50.64  Aligned_cols=25  Identities=36%  Similarity=0.441  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218          25 QGEIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.46  E-value=0.00014  Score=51.29  Aligned_cols=26  Identities=35%  Similarity=0.592  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .++.++.|+|+.||||||+.+.|+..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            35678999999999999999999864

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.46  E-value=0.0002  Score=54.55  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG   49 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~   49 (119)
                      .++..|+++|++||||||++..||..+   |  +..++.|
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D  137 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD  137 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence            346789999999999999999999654   3  4455654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.46  E-value=0.00014  Score=51.21  Aligned_cols=25  Identities=32%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+-.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (250)
T PRK11264         28 PGEVVAIIGPSGSGKTTLLRCINLL   52 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568999999999999999999854

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.46  E-value=0.00014  Score=51.00  Aligned_cols=25  Identities=32%  Similarity=0.597  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124         27 QGETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999954

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.46  E-value=0.00015  Score=48.51  Aligned_cols=25  Identities=36%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230          25 KGEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.45  E-value=0.00014  Score=51.69  Aligned_cols=25  Identities=28%  Similarity=0.513  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744         38 KNQVTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568899999999999999999854

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.45  E-value=0.00029  Score=55.01  Aligned_cols=29  Identities=31%  Similarity=0.473  Sum_probs=24.5

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++-..+.+|.|+|++|+||||++..|+..
T Consensus       345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~  373 (559)
T PRK12727        345 DPLERGGVIALVGPTGAGKTTTIAKLAQR  373 (559)
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            34456789999999999999999999864

>cd01394 radB RadB

Probab=97.45  E-value=0.00016  Score=49.87  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=27.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~   50 (119)
                      ....+.|.|+||||||++|..++...     .+.+++.+.
T Consensus        18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~   57 (218)
T cd01394          18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            45678999999999999999998653     455776543

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=97.45  E-value=0.00014  Score=47.41  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      +|+|+|++||||||+..++..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            799999999999999999975

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>TIGR00959 ffh signal recognition particle protein

Probab=97.45  E-value=0.00015  Score=55.27  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=27.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc----C--ccccchh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLSTG   49 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~~   49 (119)
                      .++..++++|++||||||+|..||..+    |  +.+++.|
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D  137 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD  137 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            446788999999999999988888652    2  4456665

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=97.45  E-value=0.00014  Score=50.69  Aligned_cols=26  Identities=27%  Similarity=0.308  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+.++.|+|+.||||||+.+.|+..+
T Consensus        11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   36 (230)
T TIGR02770        11 RGEVLALVGESGSGKSLTCLAILGLL   36 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            46689999999999999999998643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.45  E-value=0.00012  Score=51.61  Aligned_cols=77  Identities=14%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc----CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHH-HHHHHHHhh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY----CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL-VVDLISNNL   89 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~----~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~ll~~~l   89 (119)
                      +.+..|.|+|++||||||+.+.|..-.    |-.+++-.++....-++-......+-..+++..+++... +.+++.-++
T Consensus        28 ~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl  107 (258)
T COG3638          28 NQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL  107 (258)
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhc
Confidence            345679999999999999999998622    223333222221111111112222333455566676654 333555555


Q ss_pred             cC
Q psy9244          90 DK   91 (119)
Q Consensus        90 ~~   91 (119)
                      ..
T Consensus       108 ~~  109 (258)
T COG3638         108 GY  109 (258)
T ss_pred             cc
Confidence            43

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=97.44  E-value=0.0001  Score=49.16  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC-ccccchhHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC-VCHLSTGDM   51 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~-~~~is~~~l   51 (119)
                      ++=++.+||||||+|.+|++-|+ +.|+--|++
T Consensus         2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI   34 (168)
T PF08303_consen    2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI   34 (168)
T ss_pred             EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence            34478999999999999999999 999877665

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.44  E-value=0.00013  Score=49.93  Aligned_cols=23  Identities=30%  Similarity=0.598  Sum_probs=16.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+|.||||+||||+...+....
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            47899999999997666665544

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.44  E-value=0.00014  Score=51.85  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...|+|+|++||||||+.+.+.+..
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i  151 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEI  151 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             ceEEEEECCCccccchHHHHHhhhc
Confidence            5689999999999999999998865

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=97.44  E-value=0.00015  Score=50.28  Aligned_cols=25  Identities=36%  Similarity=0.530  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl   59 (228)
T PRK10584         35 RGETIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999999964

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=97.44  E-value=0.00015  Score=50.43  Aligned_cols=25  Identities=40%  Similarity=0.658  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+++.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (234)
T cd03251          27 AGETVALVGPSGSGKSTLVNLIPRF   51 (234)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4668999999999999999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.43  E-value=0.00017  Score=48.16  Aligned_cols=25  Identities=40%  Similarity=0.613  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        27 ~Ge~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246          27 PGESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4568999999999999999999964

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.43  E-value=0.00015  Score=59.47  Aligned_cols=27  Identities=33%  Similarity=0.386  Sum_probs=23.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      ..++|+|+||+||||+|+.||+.+++.
T Consensus        39 HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         39 HAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            346899999999999999999998764

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.43  E-value=0.00014  Score=51.24  Aligned_cols=24  Identities=42%  Similarity=0.706  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....++|+|++||||||+.+.++-
T Consensus        29 ~Ge~~~i~G~nGsGKSTL~~~l~G   52 (235)
T COG1122          29 KGERVLLIGPNGSGKSTLLKLLNG   52 (235)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            456899999999999999999984

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.43  E-value=0.00018  Score=49.22  Aligned_cols=36  Identities=31%  Similarity=0.454  Sum_probs=28.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD   50 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~   50 (119)
                      .....+.|+|+||||||++|..++...     .+.+++..+
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            345678999999999999999988542     366777754

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.43  E-value=0.00016  Score=49.84  Aligned_cols=25  Identities=40%  Similarity=0.545  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266          30 PGEVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999964

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.43  E-value=0.00026  Score=54.97  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=27.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH------cCccccchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK------YCVCHLSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~------~~~~~is~~~l~   52 (119)
                      ++..++|.|+||+|||++|..++..      ..+.++++.+-.
T Consensus        30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~   72 (509)
T PRK09302         30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP   72 (509)
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence            3567899999999999999987643      135667665433

>PRK13764 ATPase; Provisional

Probab=97.43  E-value=0.00013  Score=57.65  Aligned_cols=27  Identities=33%  Similarity=0.572  Sum_probs=23.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ....|+|+|+|||||||++++|+..+.
T Consensus       256 ~~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        256 RAEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346799999999999999999997763

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.43  E-value=0.00016  Score=47.90  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        25 ~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216          25 RGEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.43  E-value=0.00016  Score=47.06  Aligned_cols=26  Identities=35%  Similarity=0.436  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|+.||||||+.+.|+..+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            45688999999999999999998643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.43  E-value=0.00016  Score=56.23  Aligned_cols=28  Identities=25%  Similarity=0.255  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +..++|+||+|+||||+|+.+|+.+++.
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         38 HHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            3457999999999999999999998764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.43  E-value=0.00016  Score=48.71  Aligned_cols=26  Identities=19%  Similarity=0.135  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|+.||||||+.+.|+..+
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (182)
T cd03215          25 AGEIVGIAGLVGNGQTELAEALFGLR   50 (182)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45689999999999999999999653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PLN02772 guanylate kinase

Probab=97.43  E-value=0.00019  Score=54.03  Aligned_cols=34  Identities=26%  Similarity=0.518  Sum_probs=26.1

Q ss_pred             CCCCCCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244           8 LPKESHESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus         8 ~~~~~~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      |++...+.....++|+||+||||+|+.+.|.+.+
T Consensus       126 ~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~  159 (398)
T PLN02772        126 WSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEF  159 (398)
T ss_pred             cccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhc
Confidence            3333444455679999999999999999998754

>PRK10908 cell division protein FtsE; Provisional

Probab=97.43  E-value=0.00016  Score=49.99  Aligned_cols=26  Identities=35%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.++.|+|+.||||||+.+.|+..
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGI   51 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999864

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.42  E-value=0.00016  Score=51.26  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|++||||||+.+.|+..
T Consensus        37 ~Ge~~~l~G~nGsGKSTLl~~l~G~   61 (259)
T PRK14274         37 ENEVTAIIGPSGCGKSTFIKTLNLM   61 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4668999999999999999999854

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=97.42  E-value=0.00016  Score=50.23  Aligned_cols=25  Identities=36%  Similarity=0.375  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|++||||||+.+.|+..
T Consensus         5 ~Ge~~~l~G~nGsGKSTLl~~l~G~   29 (223)
T TIGR03771         5 KGELLGLLGPNGAGKTTLLRAILGL   29 (223)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999964

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.42  E-value=0.00017  Score=49.43  Aligned_cols=25  Identities=32%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        25 ~G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268          25 KGEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999853

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.42  E-value=0.00015  Score=51.34  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++..+.|+|+.||||||+++.|+..
T Consensus        31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (258)
T PRK11701         31 PGEVLGIVGESGSGKTTLLNALSAR   55 (258)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.42  E-value=0.00016  Score=50.99  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|+|++||||||+.+.|+..
T Consensus        29 ~Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267         29 QNGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568899999999999999999864

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=97.42  E-value=0.00016  Score=46.73  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+||||+..++...
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47999999999999999999853

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=97.42  E-value=0.00015  Score=47.17  Aligned_cols=23  Identities=22%  Similarity=0.440  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+|||++..++...
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhC
Confidence            37999999999999999999764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.42  E-value=0.00016  Score=50.99  Aligned_cols=25  Identities=36%  Similarity=0.619  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|++||||||+.+.|+..
T Consensus        25 ~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (252)
T TIGR03005        25 AGEKVALIGPSGSGKSTILRILMTL   49 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.42  E-value=0.00018  Score=47.83  Aligned_cols=24  Identities=25%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+.|+|++||||||+++.|...+
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l   25 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPAL   25 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999875

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.42  E-value=0.00016  Score=50.92  Aligned_cols=24  Identities=29%  Similarity=0.495  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+.++.|+|+.||||||+++.|+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255         30 QNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999985

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=97.42  E-value=0.00016  Score=50.20  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+.++.|+|++||||||+.+.|+..+
T Consensus        32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          32 SGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            45688999999999999999998543

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.41  E-value=0.00017  Score=49.77  Aligned_cols=25  Identities=28%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|++||||||+.+.|+..
T Consensus        36 ~Ge~~~i~G~nGsGKSTLl~~i~G~   60 (214)
T PRK13543         36 AGEALLVQGDNGAGKTTLLRVLAGL   60 (214)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999964

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=97.41  E-value=0.00018  Score=49.23  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        30 ~G~~~~i~G~nG~GKSTLl~~i~G~   54 (204)
T cd03250          30 KGELVAIVGPVGSGKSSLLSALLGE   54 (204)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4568999999999999999999864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=97.41  E-value=0.00017  Score=51.53  Aligned_cols=26  Identities=35%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+..+.|+|++||||||+.+.|+..
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35678999999999999999999864

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=97.41  E-value=0.00017  Score=50.05  Aligned_cols=25  Identities=32%  Similarity=0.585  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+..
T Consensus        28 ~G~~~~i~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254          28 PGETVAIVGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4467899999999999999999864

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=97.41  E-value=0.00016  Score=46.97  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=19.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+++|+|||||||+.+++..
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~   22 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTD   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4799999999999999999974

Rab GTPases are implicated in vesicle trafficking.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.41  E-value=0.00018  Score=48.32  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|+|+.||||||+.+.|+..
T Consensus        24 ~G~~~~l~G~nGsGKStLl~~i~G~   48 (180)
T cd03214          24 AGEIVGILGPNGAGKSTLLKTLAGL   48 (180)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999864

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.41  E-value=0.00043  Score=47.99  Aligned_cols=55  Identities=25%  Similarity=0.435  Sum_probs=36.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG   73 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g   73 (119)
                      ++.-|+|-|.=||||||+++.|++.+.-..+++   +-.-...++++++.+++.+.++
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v---~~trEP~~~~ige~iR~~ll~~   56 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV---VLTREPGGTPIGEKIRELLLNG   56 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCCCChHHHHHHHHHcCC
Confidence            356789999999999999999998763322211   0001123467777787777665

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.41  E-value=0.00018  Score=49.43  Aligned_cols=26  Identities=42%  Similarity=0.571  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .++.++.|+|+.||||||+.+.|+..
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999864

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00017  Score=50.83  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+.++.|+|++||||||+.+.|+.
T Consensus        28 ~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         28 KNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            456899999999999999999994

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=97.41  E-value=0.00017  Score=49.86  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl   36 (213)
T PRK15177         12 YHEHIGILAAPGSGKTTLTRLLCGL   36 (213)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999953

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.41  E-value=0.00017  Score=50.79  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+++.|+-.
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251         29 EKELTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhc
Confidence            4568999999999999999999853

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.41  E-value=0.00019  Score=47.86  Aligned_cols=26  Identities=38%  Similarity=0.710  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|+.||||||+.+.|+-.+
T Consensus        27 ~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          27 PGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45689999999999999999998653

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=97.41  E-value=0.00017  Score=50.32  Aligned_cols=25  Identities=40%  Similarity=0.603  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (232)
T PRK10771         24 RGERVAILGPSGAGKSTLLNLIAGF   48 (232)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4668999999999999999999864

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.41  E-value=0.00017  Score=50.47  Aligned_cols=25  Identities=36%  Similarity=0.587  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|+|+.||||||+.+.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (240)
T PRK09493         26 QGEVVVIIGPSGSGKSTLLRCINKL   50 (240)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999964

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.41  E-value=0.00019  Score=52.09  Aligned_cols=27  Identities=26%  Similarity=0.262  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +....+.|+|+|||||||+...+...+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l  128 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRL  128 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345788999999999999998887764

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=97.41  E-value=0.0006  Score=51.15  Aligned_cols=87  Identities=18%  Similarity=0.149  Sum_probs=46.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE   93 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~   93 (119)
                      .++|+|++||||||+...+.+.+     +..++++.|=+.-.+..........+.  +-|...  ......++..|... 
T Consensus       151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~--evg~~~--~~~~~~l~~aLR~~-  225 (372)
T TIGR02525       151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQS--QIGRDV--DSFANGIRLALRRA-  225 (372)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeeccccc--ccCCCc--cCHHHHHHHhhccC-
Confidence            58899999999999999997765     234556554433322211111000000  001111  12344555555543 


Q ss_pred             CCCcEEEeCCCCCHHHHHH
Q psy9244          94 CQNGFLLDGFPRTVPQAEK  112 (119)
Q Consensus        94 ~~~g~vldg~P~~~~q~~~  112 (119)
                        -.+|+-|-=|+.+.++.
T Consensus       226 --PD~I~vGEiRd~et~~~  242 (372)
T TIGR02525       226 --PKIIGVGEIRDLETFQA  242 (372)
T ss_pred             --CCEEeeCCCCCHHHHHH
Confidence              24666665588777764

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>KOG1533|consensus

Probab=97.41  E-value=8.2e-05  Score=52.49  Aligned_cols=23  Identities=35%  Similarity=0.663  Sum_probs=18.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..-+|+|||||||||.|--+.+-
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~~f   25 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMSQF   25 (290)
T ss_pred             cceEEEcCCCCCccchhhhHHHH
Confidence            34689999999999998777653

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=97.41  E-value=0.00018  Score=50.27  Aligned_cols=25  Identities=32%  Similarity=0.405  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   34 (230)
T TIGR01184        10 QGEFISLIGHSGCGKSTLLNLISGL   34 (230)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999999854

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK10646 ADP-binding protein; Provisional

Probab=97.40  E-value=0.00025  Score=46.88  Aligned_cols=29  Identities=24%  Similarity=0.218  Sum_probs=25.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      +.+..|++.|.-|+||||+++.|++.+|+
T Consensus        26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         26 DGATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            44567999999999999999999999875

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00027  Score=57.23  Aligned_cols=45  Identities=18%  Similarity=0.368  Sum_probs=35.8

Q ss_pred             CCCCCc-eEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHHh
Q psy9244          13 HESTGV-NAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVS   57 (119)
Q Consensus        13 ~p~~~~-~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~~   57 (119)
                      -|.+|. .++++||+|+|||.+|+.||+.+.     +..|++++.+....-
T Consensus       516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsV  566 (786)
T COG0542         516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSV  566 (786)
T ss_pred             CCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHH
Confidence            455555 567799999999999999999763     677899998877653

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=97.40  E-value=0.00018  Score=49.36  Aligned_cols=26  Identities=38%  Similarity=0.549  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.++.|+|+.||||||+.+.|+..
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl   47 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGF   47 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35678999999999999999999864

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=97.40  E-value=0.00012  Score=50.67  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=20.0

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~   41 (119)
                      |+|.|+|||||||+.+.+.+..
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~~   22 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKDR   22 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHhc
Confidence            5799999999999999998874

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00018  Score=50.44  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        28 ~Ge~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895         28 SGEIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4678999999999999999999964

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=97.40  E-value=0.00018  Score=45.69  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+|+++|.+||||||+...+....
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999998643

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.40  E-value=0.00019  Score=54.35  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=27.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG   49 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~   49 (119)
                      ..+.+|+|+|++||||||++..||..+     .+.+++.|
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD  278 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD  278 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence            446789999999999999999998654     24455654

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00018  Score=50.81  Aligned_cols=26  Identities=23%  Similarity=0.394  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|++||||||+.+.|+..+
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         29 ENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            45689999999999999999998653

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.40  E-value=0.00016  Score=47.83  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+.|+|++||||||++.+|...+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l   23 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKAL   23 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999998864

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.40  E-value=0.00017  Score=51.05  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        29 ~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241         29 PRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999953

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.40  E-value=0.00018  Score=51.36  Aligned_cols=25  Identities=40%  Similarity=0.481  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+||.||||||+.+.|+.-
T Consensus        27 ~G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          27 KGEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3568899999999999999999974

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=97.40  E-value=0.00019  Score=49.75  Aligned_cols=27  Identities=33%  Similarity=0.533  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+.++.|+|+.||||||+.+.|+..+
T Consensus        32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        32 NAGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            346789999999999999999999653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.40  E-value=0.00019  Score=49.17  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus        26 ~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538         26 AGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999864

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.40  E-value=0.00019  Score=56.09  Aligned_cols=27  Identities=30%  Similarity=0.337  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      ..++|+||+|+||||+|+.+|+.+++.
T Consensus        39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (527)
T PRK14969         39 HAYLFTGTRGVGKTTLARILAKSLNCE   65 (527)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            457899999999999999999998763

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.39  E-value=0.00023  Score=58.48  Aligned_cols=35  Identities=20%  Similarity=0.458  Sum_probs=27.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      .++|+||+|+|||++|+.|++.+     .+..+++.++..
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~  639 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME  639 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence            68899999999999999999864     245567766544

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.39  E-value=0.00015  Score=56.33  Aligned_cols=26  Identities=38%  Similarity=0.584  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++.++.|+|++||||||+++.|+.-|
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            56789999999999999999998765

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK04296 thymidine kinase; Provisional

Probab=97.39  E-value=0.00018  Score=49.02  Aligned_cols=25  Identities=28%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..++++|++|+||||++..++.++
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999988765

>PRK13768 GTPase; Provisional

Probab=97.39  E-value=0.00018  Score=51.15  Aligned_cols=25  Identities=28%  Similarity=0.321  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..++|.|++||||||++..++..+
T Consensus         2 ~~~i~v~G~~G~GKTt~~~~~~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLTKALSDWL   26 (253)
T ss_pred             cEEEEEECCCCccHHHHHHHHHHHH
Confidence            4578999999999999998888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
1ak2_A	233	Adenylate Kinase Isoenzyme-2 Length = 233		6e-41
2c9y_A	242	Structure Of Human Adenylate Kinase 2 Length = 242		4e-40
1ake_A	214	Structure Of The Complex Between Adenylate Kinase F		3e-30
3hpr_A	214	Crystal Structure Of V148g Adenylate Kinase From E.		3e-30
1e4v_A	214	Mutant G10v Of Adenylate Kinase From E. Coli, Modif		3e-29
1aky_A	220	High-Resolution Structures Of Adenylate Kinase From		5e-29
3aky_A	220	Stability, Activity And Structure Of Adenylate Kina		5e-29
1e4y_A	214	Mutant P9l Of Adenylate Kinase From E. Coli, Modifi		5e-28
1dvr_A	220	Structure Of A Mutant Adenylate Kinase Ligated With		8e-28
1s3g_A	217	Crystal Structure Of Adenylate Kinase From Bacillus		1e-26
3fb4_A	216	Crystal Structure Of Adenylate Kinase From Mariniba		8e-26
1zin_A	217	Adenylate Kinase With Bound Ap5a Length = 217		5e-25
3tlx_A	243	Crystal Structure Of Pf10_0086, Adenylate Kinase Fr		7e-25
3be4_A	217	Crystal Structure Of Cryptosporidium Parvum Adenyla		1e-24
1zak_A	222	Adenylate Kinase From Maize In Complex With The Inh		5e-23
3gmt_A	230	Crystal Structure Of Adenylate Kinase From Burkhold		2e-22
2cdn_A	201	Crystal Structure Of Mycobacterium Tuberculosis Ade		4e-22
3dkv_A	217	Crystal Structure Of Adenylate Kinase Variant Aklse		6e-22
1p4s_A	181	Solution Structure Of Mycobacterium Tuberculosis Ad		2e-21
3dl0_A	216	Crystal Structure Of Adenylate Kinase Variant Aklse		4e-21
1z83_A	196	Crystal Structure Of Human Ak1a In Complex With Ap5		8e-21
2rgx_A	206	Crystal Structure Of Adenylate Kinase From Aquifex		1e-20
3adk_A	195	Refined Structure Of Porcine Cytosolic Adenylate Ki		1e-20
1p3j_A	217	Adenylate Kinase From Bacillus Subtilis Length = 21		2e-20
2oo7_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-20
2qaj_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-20
2p3s_A	217	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-20
2ori_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-20
2eu8_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-20
2osb_A	216	Crystal Structure Of A Thermostable Mutant Of Bacil		2e-19
3l0p_A	223	Crystal Structures Of Iron Containing Adenylate Kin		6e-19
2xb4_A	223	Crystal Structures Of Zinc Containing Adenylate Kin		7e-19
3cm0_A	186	Crystal Structure Of Adenylate Kinase From Thermus		3e-18
2ak3_A	226	The Three-Dimensional Structure Of The Complex Betw		1e-16
3umf_A	217	Schistosoma Mansoni Adenylate Kinase Length = 217		4e-16
1zd8_A	227	Structure Of Human Adenylate Kinase 3 Like 1 Length		4e-16
2ar7_A	246	Crystal Structure Of Human Adenylate Kinase 4, Ak4		2e-15
3ndp_A	231	Crystal Structure Of Human Ak4(L171p) Length = 231		3e-15
2bwj_A	199	Structure Of Adenylate Kinase 5 Length = 199		2e-14
1uky_A	203	Substrate Specificity And Assembly Of Catalytic Cen		2e-13
1qf9_A	194	Ph Influences Fluoride Coordination Number Of The A		4e-13
1tev_A	196	Crystal Structure Of The Human UmpCMP KINASE IN OPE		1e-11

>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2 Length = 233

Iteration: 1
 Score =  162 bits (409), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 93/117 (79%), Gaps = 3/117 (2%)
Query: 3   PLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNL 62
           P A P+P+      GV A+LLGPPG+GKGTQAP  AK +CVCHL+TGDMLRA V+SGS L
Sbjct: 5   PAAEPVPESPK---GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSEL 61
Query: 63  GKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           GKKLK TMDAGKLVSDE+V++LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct: 62  GKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK 118

>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2 Length = 242

Iteration: 1
 Score =  159 bits (402), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 87/103 (84%)
Query: 17  GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76
           G+ A+LLGPPG+GKGTQAP  A+ +CVCHL+TGDMLRA V+SGS LGKKLK TMDAGKLV
Sbjct: 16  GIRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLV 75
Query: 77  SDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           SDE+VV+LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct: 76  SDEMVVELIEKNLETPLCKNGFLLDGFPRTVRQAEMLDDLMEK 118

>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From Escherichia Coli And The Inhibitor Ap5a Refined At 1.9 Angstroms Resolution: A Model For A Catalytic Transition State Length = 214

Iteration: 1
 Score =  126 bits (316), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 72/91 (79%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           ILLG PG+GKGTQA    +KY +  +STGDMLRA V SGS LGK+ K+ MDAGKLV+DEL
Sbjct: 4   ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           V+ L+   + + +C+NGFLLDGFPRT+PQA+
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQAD 94

>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli, In Complex With Ap5a Length = 214

Iteration: 1
 Score =  126 bits (316), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 72/91 (79%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           ILLG PG+GKGTQA    +KY +  +STGDMLRA V SGS LGK+ K+ MDAGKLV+DEL
Sbjct: 4   ILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           V+ L+   + + +C+NGFLLDGFPRT+PQA+
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQAD 94

>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 71/91 (78%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           ILLG P +GKGTQA    +KY +  +STGDMLRA V SGS LGK+ K+ MDAGKLV+DEL
Sbjct: 4   ILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           V+ L+   + + +C+NGFLLDGFPRT+PQA+
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQAD 94

>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast Ligated With Inhibitor Ap5a, Showing The Pathway Of Phosphoryl Transfer Length = 220

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 15  STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
           S  +  +L+GPPG+GKGTQAP   +++   HL+TGDMLR++++ G+ LG + K+ MD G 
Sbjct: 2   SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61
Query: 75  LVSDELVVDLISNNL-DKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           LVSD+++V++I + L + P C+NGF+LDGFPRT+PQAEK+  ++
Sbjct: 62  LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQML 105

>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase Mutants Length = 220

Iteration: 1
 Score =  122 bits (306), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 15  STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
           S  +  +L+GPPG+GKGTQAP   +++   HL+TGDMLR++++ G+ LG + K+ MD G 
Sbjct: 2   SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61
Query: 75  LVSDELVVDLISNNL-DKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           LVSD+++V++I + L + P C+NGF+LDGFPRT+PQAEK+  ++
Sbjct: 62  LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQML 105

>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In The Gly-Loop Length = 214

Iteration: 1
 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/91 (60%), Positives = 70/91 (76%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           ILLG   +GKGTQA    +KY +  +STGDMLRA V SGS LGK+ K+ MDAGKLV+DEL
Sbjct: 4   ILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDEL 63
Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           V+ L+   + + +C+NGFLLDGFPRT+PQA+
Sbjct: 64  VIALVKERIAQEDCRNGFLLDGFPRTIPQAD 94

>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An Atp- Analogue Showing Domain Closure Over Atp Length = 220

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 15  STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
           S  +  +L+GPPG+GKGTQAP   +++   HL+TGDMLR++++ G+ LG + K+ MD G 
Sbjct: 2   SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61
Query: 75  LVSDELVVDLISNNL-DKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           LVSD+++V++I + L + P C+NGF+L GFPRT+PQAEK+  ++
Sbjct: 62  LVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQML 105

>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus Globisporus Length = 217

Iteration: 1
 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 68/100 (68%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQA    +KY   H+STGDM RA +  G+ LG K K  MD G LV 
Sbjct: 1   MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           DE+ + ++   L K +C NGFLLDGFPRTVPQAE +  L+
Sbjct: 61  DEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLL 100

>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus Marinus Length = 216

Iteration: 1
 Score =  111 bits (278), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 70/100 (70%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQA    +KY + H+STGDM RA + +G+ LG K K  MD G LV 
Sbjct: 1   MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           DE+ + ++   L K +CQ GFLLDGFPRTV QA+ + SL+
Sbjct: 61  DEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLL 100

>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a Length = 217

Iteration: 1
 Score =  109 bits (272), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 69/100 (69%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQA      Y + H+STGDM RA +  G+ LG + K+ MD G LV 
Sbjct: 1   MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           DE+ + ++   L K +CQNGFLLDGFPRTV QAE + +++
Sbjct: 61  DEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETML 100

>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From Plasmodium Falciparum Length = 243

Iteration: 1
 Score =  108 bits (270), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 66/99 (66%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           I LG PGSGKGTQ+    K +C CHLSTGD+LR      + LG K+K  ++ GKLV D++
Sbjct: 33  IFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQM 92
Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           V+ L+   L  P+C+ GF+LDG+PR V QAE +  L+ K
Sbjct: 93  VLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQK 131

>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate Kinase Cgd5_3360 Length = 217

Iteration: 1
 Score =  107 bits (267), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 67/99 (67%)
Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N IL+G PGSGKGTQ     K+Y + HLSTGDMLR  + +G+ +G + K  +++G  V D
Sbjct: 7   NLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGD 66
Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           E+V+ L+    D   C NGF+LDGFPRT+PQAE +  ++
Sbjct: 67  EIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKIL 105

>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a) Length = 222

Iteration: 1
 Score =  102 bits (254), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +  ++ G P SGKGTQ  L   KY + H+S GD+LRAE+++GS  GK+ KE M+ G+LV 
Sbjct: 6   LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 65
Query: 78  DELVVDLISNNLDKPECQ-NGFLLDGFPRTVPQAEKVYSLMMK 119
           DE+VV+++   L +P+ Q NG+LLDG+PR+  QA  + +L ++
Sbjct: 66  DEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIR 108

>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia Pseu Length = 230

Iteration: 1
 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 62/91 (68%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           ILLG PG+GKGTQA    +K+ +  +STGD LRA V +G+ LG + K   D GKLV D L
Sbjct: 12  ILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPDSL 71
Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           ++ L+   L + +C NG+L DGFPRT+ QA+
Sbjct: 72  IIGLVKERLKEADCANGYLFDGFPRTIAQAD 102

>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate Kinase Complexed With Two Molecules Of Adp And Mg Length = 201

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 8   LPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLK 67
           +P+ SH    +  +LLGPPG+GKGTQA   A+K  +  +STG++ R  +  G+ LG + K
Sbjct: 15  VPRGSH----MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAK 70
Query: 68  ETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
             +DAG LV  +L  +L+ + L+ P+  NGF+LDG+PR+V QA+ ++ ++ +
Sbjct: 71  RYLDAGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLER 122

>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1 Length = 217

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 63/92 (68%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQA    +KY + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVRERLSKSDCERGFLLDGFPRTVAQ 92

>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate Kinase Length = 181

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 69/102 (67%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +  +LLGPPG+GKGTQA   A+K  +  +STG++ R  +  G+ LG + K  +DAG LV 
Sbjct: 1   MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
            +L  +L+ + L+ P+  NGF+LDG+PR+V QA+ ++ ++ +
Sbjct: 61  SDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLER 102

>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3 Length = 216

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 62/92 (67%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQ     +KY + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92

>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a Length = 196

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
            ++G PGSGKGTQ     +KY   HLSTGD+LR+EVSSGS  GKKL E M+ G+LV  E 
Sbjct: 13  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET 72
Query: 81  VVDLISNNL-DKPECQNGFLLDGFPRTVPQAEK 112
           V+D++ + +  K     GFL+DG+PR V Q E+
Sbjct: 73  VLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEE 105

>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex Aeolicus In Complex With Ap5a Length = 206

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           + LGPPG+GKGTQA   AK+    H+STGD+LR  V  G+ LGKK KE M+ G+LV D+L
Sbjct: 4   VFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDL 63
Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           ++ LI     K       + DGFPRTV QAE +  ++ K
Sbjct: 64  IIALIEEVFPK---HGNVIFDGFPRTVKQAEALDEMLEK 99

>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At 2.1 Angstroms Resolution Length = 195

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
            ++G PGSGKGTQ     +KY   HLSTGD+LRAEVSSGS  GK L E M+ G+LV  E 
Sbjct: 13  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLET 72
Query: 81  VVDLISNNL-DKPECQNGFLLDGFPRTVPQAEK 112
           V+D++ + +  K +   GFL+DG+PR V Q E+
Sbjct: 73  VLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEE 105

>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis Length = 217

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQ     + Y + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92

>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (T179iQ199R) Length = 217

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQ     + Y + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92

>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199rG213E) Length = 217

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQ     + Y + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92

>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (G214rQ199R) Length = 217

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQ     + Y + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92

>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (A193vQ199R) Length = 216

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQ     + Y + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92

>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (Q199r) Length = 216

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGTQ     + Y + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92

>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus Subtilis Adenylate Kinase (q16l/q199r/) Length = 216

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 60/92 (65%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N +L+G PG+GKGT      + Y + H+STGDM RA +   + LG + K  +D G+LV 
Sbjct: 1   MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQ 109
           DE+ + ++   L K +C+ GFLLDGFPRTV Q
Sbjct: 61  DEVTIGIVKERLGKDDCERGFLLDGFPRTVAQ 92

>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N ++ GP GSGKGTQ  L   KY + H+ +G + R  +  G+ LGKK KE +D G LV 
Sbjct: 1   MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           D++ + ++   L+  + ++G+LLDGFPR   QA+K++  + +
Sbjct: 61  DDITIPMVLETLE-SKGKDGWLLDGFPRNTVQAQKLFEALQE 101

>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase From Desulfovibrio Gigas Length = 223

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 65/102 (63%), Gaps = 1/102 (0%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +N ++ GP GSGKGTQ  L   KY + H+ +G + R  +  G+ LGKK KE +D G LV 
Sbjct: 1   MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           D++ + ++   L+  + ++G+LLDGFPR   QA+K++  + +
Sbjct: 61  DDITIPMVLETLE-SKGKDGWLLDGFPRNTVQAQKLFEALQE 101

>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus Thermophilus Hb8 Length = 186

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 64/103 (62%), Gaps = 5/103 (4%)
Query: 15  STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
             G   I LGPPG+GKGTQA   A++     LSTGD+LR  V+ G+ LG++++  M+ G 
Sbjct: 2   DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGD 61
Query: 75  LVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           LV D+L+++LI     + E     + DGFPRT+ QAE +  L+
Sbjct: 62  LVPDDLILELI-----REELAERVIFDGFPRTLAQAEALDRLL 99

>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between Mitochondrial Matrix Adenylate Kinase And Its Substrate Amp At 1.85 Angstroms Resolution Length = 226

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           + A ++G PGSGKGT +    K + + HLS+GD+LR  +  G+ +G   K  +D GKL+ 
Sbjct: 7   LRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIP 66
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           D+++  L+ + L K   Q  +LLDGFPRT+PQAE
Sbjct: 67  DDVMTRLVLHEL-KNLTQYNWLLDGFPRTLPQAE 99

>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase Length = 217

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
            +LG PGSGKGTQ     +K+   HLS+GD+LRAEV SGS  GK+LK  M+ G+LV  E+
Sbjct: 33  FVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEV 92
Query: 81  VVDLISNNLDKPECQN-GFLLDGFPRTVPQAEK 112
           V+ L+   + K   +N  FL+DG+PR + Q  K
Sbjct: 93  VLALLKEAMIKLVDKNCHFLIDGYPRELDQGIK 125

>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1 Length = 227

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           + A+++G PGSGKGT +      + + HLS+GD+LR  +  G+ +G   K  +D GKL+ 
Sbjct: 8   LRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIP 67
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           D+++  L  + L K   Q  +LLDGFPRT+PQAE
Sbjct: 68  DDVMTRLALHEL-KNLTQYSWLLDGFPRTLPQAE 100

>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4 Length = 246

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 11  ESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70
           +S  S  + A++LGPPGSGKGT     A+ + + HLS+G  LR  + + + +G+  K+ +
Sbjct: 21  QSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYI 80
Query: 71  DAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           +   LV D ++  L+ + L+    Q+ +LLDGFPRT+ QAE
Sbjct: 81  EKSLLVPDHVITRLMMSELENRRGQH-WLLDGFPRTLGQAE 120

>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p) Length = 231

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           + A++LGPPGSGKGT     A+ + + HLS+G  LR  + + + +G+  K+ ++   LV 
Sbjct: 6   LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVP 65
Query: 78  DELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           D ++  L+ + L+    Q+ +LLDGFPRT+ QAE
Sbjct: 66  DHVITRLMMSELENRRGQH-WLLDGFPRTLGQAE 98

>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5 Length = 199

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
            ++G PGSGKGTQ     +KY   HLSTG++LR E++S S   K +++ M+ G LV   +
Sbjct: 16  FIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGI 75
Query: 81  VVDLISNNLDKPECQ-NGFLLDGFPRTVPQAEK 112
           V++L+   +        GFL+DG+PR V Q E+
Sbjct: 76  VLELLKEAMVASLGDTRGFLIDGYPREVKQGEE 108

>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center Derived From Two Structures Of Ligated Uridylate Kinase Length = 203

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV-SSGSNLGKKLKETMDAGKLVSDE 79
            +LG PG+GKGTQ     K Y   HLS GD+LRAE   +GS  G+ +K  +  G++V  E
Sbjct: 19  FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 78
Query: 80  LVVDLISNNL--DKPECQNGFLLDGFPRTVPQA 110
           + + L+ N +  +    ++ FL+DGFPR + QA
Sbjct: 79  ITLALLRNAISDNVKANKHKFLIDGFPRKMDQA 111

>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx Phosphoryl Transfer Transition State Analog In UmpCMP Kinase Length = 194

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 20  AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79
             +LG PGSGKGTQ     + +   HLS GD+LR E  SGS  G+ +   +  G++V   
Sbjct: 9   VFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSI 68
Query: 80  LVVDLISNNLDKPECQNGFLLDGFPR 105
           + V L+ N +D  + +N FL+DGFPR
Sbjct: 69  VTVKLLKNAIDANQGKN-FLVDGFPR 93

>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN Conformation Length = 196

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 20  AILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS-GSNLGKKLKETMDAGKLVSD 78
             +LG PG+GKGTQ     +KY   HLS G++LR E  +  S  G+ +++ +  GK+V  
Sbjct: 6   VFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPV 65
Query: 79  ELVVDLISNNLDKPEC----QNGFLLDGFPRT 106
           E+ + L+   +D+       +N FL+DGFPR 
Sbjct: 66  EITISLLKREMDQTMAANAQKNKFLIDGFPRN 97

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	9e-62
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	1e-61
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	2e-61
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	3e-61
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	3e-61
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	6e-61
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	7e-61
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	3e-60
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	1e-59
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	2e-59
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	2e-58
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	1e-57
2rgx_A	206	Adenylate kinase; transferase(phosphotransferase),	8e-57
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	3e-56
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	1e-52
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	2e-52
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	6e-52
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	5e-51
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	1e-48
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	2e-48
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	4e-23
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	8e-18
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	1e-07
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	8e-06
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	5e-05

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Length = 233

 Score =  187 bits (477), Expect = 9e-62
 Identities = 78/118 (66%), Positives = 89/118 (75%)

Query: 2   APLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSN 61
           AP             GV A+LLGPPG+GKGTQAP  AK +CVCHL+TGDMLRA V+SGS 
Sbjct: 1   APNVPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSE 60

Query: 62  LGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           LGKKLK TMDAGKLVSDE+V++LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct: 61  LGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK 118

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, cytoplasm, metal-binding, nucleotide biosynthesis, nucleotide-binding; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Length = 216

 Score =  186 bits (474), Expect = 1e-61
 Identities = 46/101 (45%), Positives = 67/101 (66%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N +L+G PG+GKGTQ     +KY + H+STGDM RA +   + LG + K  +D G+LV D
Sbjct: 2   NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           E+ + ++   L K +C+ GFLLDGFPRTV QAE +  ++ +
Sbjct: 62  EVTIGIVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEE 102

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Length = 216

 Score =  186 bits (474), Expect = 2e-61
 Identities = 52/101 (51%), Positives = 69/101 (68%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N +L+G PG+GKGTQA    +KY + H+STGDM RA + +G+ LG K K  MD G LV D
Sbjct: 2   NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           E+ + ++   L K +CQ GFLLDGFPRTV QA+ + SL+  
Sbjct: 62  EVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTD 102

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 230

 Score =  186 bits (474), Expect = 3e-61
 Identities = 49/102 (48%), Positives = 66/102 (64%)

Query: 11  ESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM 70
             H    +  ILLG PG+GKGTQA    +K+ +  +STGDMLRA V +G+ LG + K  M
Sbjct: 2   AHHHHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYM 61

Query: 71  DAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
           D GKLV D L++ L+   L + +C NG+L DGFPRT+ QA+ 
Sbjct: 62  DEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADA 103

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* Length = 214

 Score =  185 bits (472), Expect = 3e-61
 Identities = 56/94 (59%), Positives = 71/94 (75%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
             ILLG P +GKGTQA    +KY +  +STGDMLRA V SGS LGK+ K+ MDAGKLV+D
Sbjct: 2   RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
           ELV+ L+   + + +C+NGFLLDGFPRT+PQA+ 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADA 95

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Length = 201

 Score =  184 bits (469), Expect = 6e-61
 Identities = 42/106 (39%), Positives = 69/106 (65%)

Query: 12  SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
               + +  +LLGPPG+GKGTQA   A+K  +  +STG++ R  +  G+ LG + K  +D
Sbjct: 15  VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD 74

Query: 72  AGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
           AG LV  +L  +L+ + L+ P+  NGF+LDG+PR+V QA+ ++ ++
Sbjct: 75  AGDLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEML 120

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Length = 217

 Score =  184 bits (470), Expect = 7e-61
 Identities = 49/106 (46%), Positives = 69/106 (65%)

Query: 14  ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG 73
            S   N IL+G PGSGKGTQ     K+Y + HLSTGDMLR  + +G+ +G + K  +++G
Sbjct: 2   NSKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESG 61

Query: 74  KLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
             V DE+V+ L+    D   C NGF+LDGFPRT+PQAE +  ++ +
Sbjct: 62  NFVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSE 107

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Length = 243

 Score =  183 bits (468), Expect = 3e-60
 Identities = 49/108 (45%), Positives = 66/108 (61%)

Query: 12  SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
                    I LG PGSGKGTQ+    K +C CHLSTGD+LR      + LG K+K  ++
Sbjct: 24  CLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIIN 83

Query: 72  AGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
            GKLV D++V+ L+   L  P+C+ GF+LDG+PR V QAE +  L+ K
Sbjct: 84  EGKLVDDQMVLSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQK 131

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* Length = 220

 Score =  181 bits (462), Expect = 1e-59
 Identities = 52/106 (49%), Positives = 80/106 (75%), Gaps = 1/106 (0%)

Query: 15  STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
           S  +  +L+GPPG+GKGTQAP   +++   HL+TGDMLR++++ G+ LG + K+ MD G 
Sbjct: 2   SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGG 61

Query: 75  LVSDELVVDLISNNLDK-PECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           LVSD+++V++I + L   P C+NGF+LDGFPRT+PQAEK+  ++ +
Sbjct: 62  LVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKE 107

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 Length = 222

 Score =  180 bits (460), Expect = 2e-59
 Identities = 45/99 (45%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 15  STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
           +  +  ++ G P SGKGTQ  L   KY + H+S GD+LRAE+++GS  GK+ KE M+ G+
Sbjct: 3   ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQ 62

Query: 75  LVSDELVVDLISNNLDKPEC-QNGFLLDGFPRTVPQAEK 112
           LV DE+VV+++   L +P+  +NG+LLDG+PR+  QA  
Sbjct: 63  LVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMA 101

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* Length = 223

 Score =  178 bits (454), Expect = 2e-58
 Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 1/101 (0%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N ++ GP GSGKGTQ  L   KY + H+ +G + R  +  G+ LGKK KE +D G LV D
Sbjct: 2   NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           ++ + ++   L + + ++G+LLDGFPR   QA+K++  + +
Sbjct: 62  DITIPMVLETL-ESKGKDGWLLDGFPRNTVQAQKLFEALQE 101

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A Length = 246

 Score =  177 bits (451), Expect = 1e-57
 Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)

Query: 7   PLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKL 66
            L  +S  S  + A++LGPPGSGKGT     A+ + + HLS+G  LR  + + + +G+  
Sbjct: 17  NLYFQSMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMA 76

Query: 67  KETMDAGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
           K+ ++   LV D ++  L+ + L+       +LLDGFPRT+ QAE 
Sbjct: 77  KQYIEKSLLVPDHVITRLMMSELENRRG-QHWLLDGFPRTLGQAEA 121

>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, nucleo binding, transferase; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A Length = 206

 Score =  173 bits (442), Expect = 8e-57
 Identities = 48/101 (47%), Positives = 63/101 (62%), Gaps = 3/101 (2%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
             + LGPPG+GKGTQA   AK+    H+STGD+LR  V  G+ LGKK KE M+ G+LV D
Sbjct: 2   ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           +L++ LI     K       + DGFPRTV QAE +  ++ K
Sbjct: 62  DLIIALIEEVFPKH---GNVIFDGFPRTVKQAEALDEMLEK 99

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* Length = 227

 Score =  173 bits (440), Expect = 3e-56
 Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 1/101 (0%)

Query: 12  SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
              +  + A+++G PGSGKGT +      + + HLS+GD+LR  +  G+ +G   K  +D
Sbjct: 2   GASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID 61

Query: 72  AGKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
            GKL+ D+++  L  + L K   Q  +LLDGFPRT+PQAE 
Sbjct: 62  QGKLIPDDVMTRLALHEL-KNLTQYSWLLDGFPRTLPQAEA 101

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Length = 196

 Score =  162 bits (413), Expect = 1e-52
 Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
            ++G PGSGKGTQ     +KY   HLSTGD+LR+EVSSGS  GKKL E M+ G+LV  E 
Sbjct: 13  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLET 72

Query: 81  VVDLISNNL-DKPECQNGFLLDGFPRTVPQAE 111
           V+D++ + +  K     GFL+DG+PR V Q E
Sbjct: 73  VLDMLRDAMVAKVNTSKGFLIDGYPREVQQGE 104

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Length = 199

 Score =  162 bits (413), Expect = 2e-52
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
              ++G PGSGKGTQ     +KY   HLSTG++LR E++S S   K +++ M+ G LV  
Sbjct: 14  IIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPS 73

Query: 79  ELVVDLISNNL-DKPECQNGFLLDGFPRTVPQAE 111
            +V++L+   +        GFL+DG+PR V Q E
Sbjct: 74  GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGE 107

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Length = 186

 Score =  161 bits (409), Expect = 6e-52
 Identities = 43/97 (44%), Positives = 60/97 (61%), Gaps = 5/97 (5%)

Query: 15  STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
             G   I LGPPG+GKGTQA   A++     LSTGD+LR  V+ G+ LG++++  M+ G 
Sbjct: 2   DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGD 61

Query: 75  LVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           LV D+L+++LI   L         + DGFPRT+ QAE
Sbjct: 62  LVPDDLILELIREEL-----AERVIFDGFPRTLAQAE 93

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Length = 194

 Score =  158 bits (403), Expect = 5e-51
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
            +LG PGSGKGTQ     + +   HLS GD+LR E  SGS  G+ +   +  G++V   +
Sbjct: 10  FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM 117
            V L+ N +D  +    FL+DGFPR           M
Sbjct: 70  TVKLLKNAIDANQG-KNFLVDGFPRNEENNNSWEENM 105

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Length = 196

 Score =  153 bits (388), Expect = 1e-48
 Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV-SSGSNLGKKLKETMDAGKLV 76
           +   +LG PG+GKGTQ     +KY   HLS G++LR E  +  S  G+ +++ +  GK+V
Sbjct: 4   LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIV 63

Query: 77  SDELVVDLISNNLDKPEC----QNGFLLDGFPRTVPQAEK 112
             E+ + L+   +D+       +N FL+DGFPR     + 
Sbjct: 64  PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQG 103

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203

 Score =  152 bits (387), Expect = 2e-48
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 3/102 (2%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS-SGSNLGKKLKETMDAGKLVSDE 79
            +LG PG+GKGTQ     K Y   HLS GD+LRAE   +GS  G+ +K  +  G++V  E
Sbjct: 19  FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQE 78

Query: 80  LVVDLISNNLDKPE--CQNGFLLDGFPRTVPQAEKVYSLMMK 119
           + + L+ N +       ++ FL+DGFPR + QA      +++
Sbjct: 79  ITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVE 120

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 87.7 bits (217), Expect = 4e-23
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           I+ GP G GK T     A +        GD++   V  G     +  E +    L    +
Sbjct: 6   IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLA---LTWKNI 62

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
               ++  L + +    ++   FP       +
Sbjct: 63  TDLTVNFLLAQNDVVLDYIA--FPDEAEALAQ 92

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 73.7 bits (181), Expect = 8e-18
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA-GKLVSDE 79
           ++ G PGSGK   A L  K+     +   D++R   S  +  G++L +      ++  D 
Sbjct: 5   LITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDG 63

Query: 80  LVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           +V  L    L         + DG  R++ + E
Sbjct: 64  VVARLCVEELGTSNHDL-VVFDGV-RSLAEVE 93

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 46.6 bits (110), Expect = 1e-07
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N +L G PG GK T     A K  + +++ GD+ R          ++L +  D  +    
Sbjct: 13  NILLTGTPGVGKTTLGKELASKSGLKYINVGDLARE---------EQLYDGYDE-EYDCP 62

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKV 113
            L  D + + LD    + G ++D            
Sbjct: 63  ILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWF 97

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184

 Score = 41.6 bits (97), Expect = 8e-06
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 9/102 (8%)

Query: 14  ESTGVNAILLGPPGSGKGTQAPLFAKK-YCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA 72
           +  G+N ++ G PG+GK + A + A +     HL  G +++       +   +    +D 
Sbjct: 7   QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-----HFYTEYDTELDT 61

Query: 73  GKLVSDELVVDLISNNLDK-PECQNGFLLDGFPRTVPQAEKV 113
              + +E   D + + ++     +   ++D     +      
Sbjct: 62  --HIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWF 101

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 39.7 bits (92), Expect = 5e-05
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 21 ILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAEVSSG 59
          +L G PGSGK T A   A        H    D L   +  G
Sbjct: 13 LLSGHPGSGKSTIAEALANLPGVPKVHFH-SDDLWGYIKHG 52

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.97
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.97
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.95
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.93
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.92
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.9
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.89
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.89
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.89
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.87
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.87
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.86
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.85
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.84
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.82
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.82
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.82
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.81
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.8
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.78
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.7
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.61
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.55
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.4
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.3
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.29
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.29
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.28
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.27
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.26
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.23
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	99.22
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.21
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.17
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.16
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.16
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.16
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.15
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.15
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.13
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.12
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.12
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	99.12
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.09
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.09
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.08
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.07
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.07
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.06
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.06
1via_A	175	Shikimate kinase; structural genomics, transferase	99.05
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.04
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.02
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.01
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.0
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	99.0
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.99
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.99
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.98
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.98
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.97
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.95
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	98.94
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.93
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.89
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.88
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.87
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.87
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.85
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.84
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.83
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.82
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.77
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.76
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.68
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.66
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.63
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.61
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.59
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.59
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.59
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.55
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.54
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.53
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.52
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.52
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.5
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.48
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.45
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.44
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.43
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.42
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.42
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.41
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.38
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	98.37
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.37
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.36
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.36
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.36
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.36
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.34
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.32
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.32
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.29
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.29
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.28
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.28
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.27
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.26
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.26
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.26
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.25
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.24
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.23
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	98.23
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.23
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.22
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.22
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.21
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.2
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.19
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.18
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.18
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	98.18
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.17
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.17
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.16
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.16
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.15
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.15
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.15
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.15
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.15
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	98.14
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.14
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.14
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.12
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.12
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.11
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.11
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.11
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.11
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.1
3bos_A	242	Putative DNA replication factor; P-loop containing	98.1
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	98.1
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.1
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.09
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.09
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.08
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.08
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.07
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.07
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.07
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.06
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.06
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.06
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	98.05
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.04
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.04
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.02
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.0
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.0
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.0
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.0
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.99
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.98
2qgz_A	308	Helicase loader, putative primosome component; str	97.98
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.97
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.97
3co5_A	143	Putative two-component system transcriptional RES	97.97
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.96
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.94
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.93
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.92
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.91
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	97.91
3pvs_A	447	Replication-associated recombination protein A; ma	97.9
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.89
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.89
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.89
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.89
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.89
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.88
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.88
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.87
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.87
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.87
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.86
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.85
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.85
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.85
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.84
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.84
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.83
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.82
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.82
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.81
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.81
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.81
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.8
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.79
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.78
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.78
3llu_A	196	RAS-related GTP-binding protein C; structural geno	97.76
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.76
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.76
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.75
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.74
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.74
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.73
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.72
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.69
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.69
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.68
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.68
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.67
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.67
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.66
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.66
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.66
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.65
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.65
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.65
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.65
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.64
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.64
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.63
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.63
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.63
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.62
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.62
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.61
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.6
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.6
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.6
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.59
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.58
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.58
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.57
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.57
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.57
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.57
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.56
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.56
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.56
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.56
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.56
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.55
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.55
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.54
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.54
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.53
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.53
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.52
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.52
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.52
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.51
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.51
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.51
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.51
2og2_A	359	Putative signal recognition particle receptor; nuc	97.51
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.5
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.5
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.5
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.5
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.5
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.49
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.49
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.49
1g6h_A	257	High-affinity branched-chain amino acid transport	97.48
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.48
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.48
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.48
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.48
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.47
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.47
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.46
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.46
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.45
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.45
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.45
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.45
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.44
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.43
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.43
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.43
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.42
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.42
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.42
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.42
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.42
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.41
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.4
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.4
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.4
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.4
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.4
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.4
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.4
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.39
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.39
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.39
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.39
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.39
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.39
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.38
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.38
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.38
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.38
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.38
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.38
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.38
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.38
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.38
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.37
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	97.37
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.37
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.37
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.37
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.37
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.37
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.36
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.35
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.35
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.35
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.35
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.35
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.35
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.34
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.34
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.34
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.34
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.33
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.33
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.33
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.33
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	97.33
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.33
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.32
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.32
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.32
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.32
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.31
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.3
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.3
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.3
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.3
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.29
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.29
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.29
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.29
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.29
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.29
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.28
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.28
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.28
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.28
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.28
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.28
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.27
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.27
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.27
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.27
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.27
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.26
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.26
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.26
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.26
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.26
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.26
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.26
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.26
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.26
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.26
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.25
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.25
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.25
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	97.25
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.25
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.25
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.25
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.24
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.24
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.24
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.23
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.23
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.23
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.22
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.21
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.2
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.2
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	97.19
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.19
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.19
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.19
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.19
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.18
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.18
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.17
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	97.16
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.16
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.15
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.15
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.14
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.14
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.14
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.14
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.14
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.13
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.13
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.13
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.13
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.13
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.13
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.12
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.11
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.1
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.09
2fna_A	357	Conserved hypothetical protein; structural genomic	97.09
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	97.09
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.09
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.08
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.08
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.08
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.07
2xxa_A	433	Signal recognition particle protein; protein trans	97.06
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.03
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.02
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.02
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	97.01
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.01
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.01
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.0
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	97.0
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.99
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.98
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.98
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.97
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.97
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.95
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.95
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.93
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.93
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	96.93
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.93
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.92
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.91
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.91
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.91
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.9
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.9
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.9
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.89
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.88
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.88
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.87
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.87
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.87
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.86
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.86
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.85
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.85
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.84
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.82
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.82
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.81
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.81
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.79
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.79
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.82
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.77
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	96.77
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	96.77
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.76
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.76
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.75
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.74
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.74
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.73
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.72
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.72
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.71
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.7
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.69
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	96.68
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.66
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.66
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.65
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	96.64
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.64
3io5_A	333	Recombination and repair protein; storage dimer, i	96.63

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.97  E-value=6.3e-31  Score=181.44  Aligned_cols=106  Identities=42%  Similarity=0.629  Sum_probs=97.5

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK   91 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~   91 (119)
                      ...+++..|+|+|||||||+|+|+.|+++||+.|||++|++++++..+++++..++.++..|.++|++++..++.+++.+
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~  103 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIK  103 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence            34455678899999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             C-CCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          92 P-ECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        92 ~-~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      . ++.+||||||||||.+|++.|++.+
T Consensus       104 ~~~~~~g~ilDGfPRt~~Qa~~l~~~~  130 (217)
T 3umf_A          104 LVDKNCHFLIDGYPRELDQGIKFEKEV  130 (217)
T ss_dssp             HTTTCSEEEEETBCSSHHHHHHHHHHT
T ss_pred             ccccccCcccccCCCcHHHHHHHHHhC
Confidence            4 4567999999999999999998765

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.97  E-value=1e-30  Score=179.17  Aligned_cols=98  Identities=48%  Similarity=0.789  Sum_probs=92.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|||||||+|+|+.|+++||+.|||+++++|+++..++++|..++.++.+|.++|++++..++.+++.+.   .|
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~---~~   77 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKH---GN   77 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSS---SC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccC---Cc
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999764   48


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      |||||||||..||+.|++.+.
T Consensus        78 ~ilDGfPRt~~Qa~~l~~~l~   98 (206)
T 3sr0_A           78 VIFDGFPRTVKQAEALDEMLE   98 (206)
T ss_dssp             EEEESCCCSHHHHHHHHHHHH
T ss_pred             eEecCCchhHHHHHHHHhhHH
Confidence            999999999999999988764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.95  E-value=5.4e-28  Score=167.82  Aligned_cols=102  Identities=47%  Similarity=0.847  Sum_probs=94.8

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE   93 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~   93 (119)
                      .+..+++.|+|+|||||||+|+.|+++||+.|+|+++++++++..+++++..+++++.+|..+|++++..++.++|.+.+
T Consensus         5 ~~~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~   84 (230)
T 3gmt_A            5 HHHHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEAD   84 (230)
T ss_dssp             ----CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGG
T ss_pred             cccccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHH
Q psy9244          94 CQNGFLLDGFPRTVPQAEKVYS  115 (119)
Q Consensus        94 ~~~g~vldg~P~~~~q~~~l~~  115 (119)
                      +.+||||||||||.+|++.|++
T Consensus        85 ~~~g~ILDGfPRt~~Qa~~L~~  106 (230)
T 3gmt_A           85 CANGYLFDGFPRTIAQADAMKE  106 (230)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHH
T ss_pred             cCCCeEecCCCCcHHHHHHHHH
Confidence            8889999999999999999875

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.93  E-value=1.2e-25  Score=155.70  Aligned_cols=116  Identities=66%  Similarity=1.066  Sum_probs=96.0

Q ss_pred             CCCCCCCCCCCCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHH
Q psy9244           2 APLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELV   81 (119)
Q Consensus         2 ~~~~~~~~~~~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   81 (119)
                      +||+++..|.+.+..+.+|+|+|+|||||||+|+.|++++++.++++++++++....++..+..+++++..|..++++++
T Consensus         1 ~~~~~~~~p~~~~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~   80 (233)
T 1ak2_A            1 APNVPAAEPVPESPKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMV   80 (233)
T ss_dssp             -------------CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CCCCCCCCCCCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHH
Confidence            57788888888888899999999999999999999999999999999999999888888899999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          82 VDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        82 ~~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      ..++..++....+..|||+||||++..|++.|.+++
T Consensus        81 ~~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l  116 (233)
T 1ak2_A           81 LELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLM  116 (233)
T ss_dssp             HHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHH
Confidence            999999998766678999999999999999887765

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.92  E-value=2.5e-24  Score=150.28  Aligned_cols=103  Identities=47%  Similarity=0.876  Sum_probs=97.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC   94 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~   94 (119)
                      .++.+|+|+|+|||||||+|+.|++++|+.|+|+++++++....+++.+..+++++..|..++++++..++..++...++
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~  106 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC  106 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          95 QNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        95 ~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      ..+||+||||++..|++.|++.+
T Consensus       107 ~~~~ildg~p~~~~q~~~l~~~l  129 (243)
T 3tlx_A          107 KKGFILDGYPRNVKQAEDLNKLL  129 (243)
T ss_dssp             SSEEEEESCCCSHHHHHHHHHHH
T ss_pred             cCCEEecCCCCcHHHHHHHHHHH
Confidence            88999999999999999998765

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.90  E-value=6.9e-23  Score=139.84  Aligned_cols=100  Identities=46%  Similarity=0.838  Sum_probs=94.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.|++++|+.++++++++++....+++.+..+.+++..|..++++++..++..++...++..+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999988777789


Q ss_pred             EEEeCCCCCHHHHHHHHHHh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l  117 (119)
                      ||+||||++..|++.+.+.+
T Consensus        81 ~ildg~p~~~~~~~~~~~~~  100 (216)
T 3dl0_A           81 FLLDGFPRTVAQAEALEEIL  100 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHH
Confidence            99999999999999998765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.89  E-value=5.7e-23  Score=140.85  Aligned_cols=101  Identities=48%  Similarity=0.885  Sum_probs=91.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN   96 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~   96 (119)
                      +.+|+|+|+|||||||+|+.|++++++.++++|+++++....+++.+..+++++..|..++++.+.+++..++....+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~   84 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVN   84 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCC
Confidence            46899999999999999999999999999999999999888888889999999988999999999999999998776778


Q ss_pred             cEEEeCCCCCHHHHHHHHHHh
Q psy9244          97 GFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        97 g~vldg~P~~~~q~~~l~~~l  117 (119)
                      +||+||||++.+|++.+++.+
T Consensus        85 ~~i~dg~~~~~~~~~~l~~~l  105 (217)
T 3be4_A           85 GFVLDGFPRTIPQAEGLAKIL  105 (217)
T ss_dssp             CEEEESCCCSHHHHHHHHHHH
T ss_pred             CEEEeCCCCCHHHHHHHHHHH
Confidence            999999999999999888654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.89  E-value=1.1e-22  Score=139.46  Aligned_cols=103  Identities=50%  Similarity=1.005  Sum_probs=92.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhc-CCC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLD-KPE   93 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~-~~~   93 (119)
                      +++..|+|+|+|||||||+|+.|++++++.++++|+++++....+++.+..+++++..|..++++.+..++.+++. ...
T Consensus         2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~   81 (220)
T 1aky_A            2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPA   81 (220)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccc
Confidence            4567899999999999999999999999999999999999888888899999999999999999999999999887 444


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          94 CQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        94 ~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      +..+||+||||++.+|++.|++.+
T Consensus        82 ~~~~~i~dg~~~~~~~~~~l~~~l  105 (220)
T 1aky_A           82 CKNGFILDGFPRTIPQAEKLDQML  105 (220)
T ss_dssp             GGSCEEEESCCCSHHHHHHHHHHH
T ss_pred             cCCCeEEeCCCCCHHHHHHHHHHH
Confidence            567999999999999998887654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.89  E-value=1.4e-22  Score=138.22  Aligned_cols=100  Identities=52%  Similarity=0.903  Sum_probs=94.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.|++++|+.+++.++++++....+++.+..+.+++..|..++++++..++.+++....+..+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~   80 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKG   80 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999988777789


Q ss_pred             EEEeCCCCCHHHHHHHHHHh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l  117 (119)
                      ||+||||++..|++.+.+.+
T Consensus        81 ~ildg~p~~~~~~~~l~~~~  100 (216)
T 3fb4_A           81 FLLDGFPRTVAQADALDSLL  100 (216)
T ss_dssp             EEEESCCCSHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHH
Confidence            99999999999999998765

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.87  E-value=3e-21  Score=130.49  Aligned_cols=106  Identities=40%  Similarity=0.779  Sum_probs=93.7

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK   91 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~   91 (119)
                      ..+..+..|+|+|+|||||||+|+.|++++++.++++|+++++.....+..+..+.+++..|..++++....++.+++..
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~   94 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNN   94 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Confidence            45666789999999999999999999999999999999999998877888899999999999999999988888888876


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          92 PECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        92 ~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      ..+..+||+||||++..|++.+++.+
T Consensus        95 ~~~~~~vIldg~~~~~~~~~~l~~~l  120 (201)
T 2cdn_A           95 PDAANGFILDGYPRSVEQAKALHEML  120 (201)
T ss_dssp             GGGTTCEEEESCCCSHHHHHHHHHHH
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHHHH
Confidence            55567899999999999998887765

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.87  E-value=5.6e-22  Score=135.45  Aligned_cols=98  Identities=57%  Similarity=0.967  Sum_probs=88.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.|++++|+.++++++++++.+..++..+..+++++..|..++++++..++..++....+..+
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~   80 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence            36899999999999999999999999999999999998888888888888888889999999999999999987655679


Q ss_pred             EEEeCCCCCHHHHHHHHH
Q psy9244          98 FLLDGFPRTVPQAEKVYS  115 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~  115 (119)
                      ||+||||++..|++.|.+
T Consensus        81 ~i~dg~~~~~~~~~~l~~   98 (214)
T 1e4v_A           81 FLLDGFPRTIPQADAMKE   98 (214)
T ss_dssp             EEEESCCCSHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHh
Confidence            999999999999988764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.86  E-value=4.6e-21  Score=131.97  Aligned_cols=99  Identities=40%  Similarity=0.834  Sum_probs=89.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      +.|+|+|+|||||||+|+.|++++|+.++++|+++++....++..+..+++++..|..++++.+..++..++...+ +.+
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~-g~~   79 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG-KDG   79 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC-TTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc-CCe
Confidence            3689999999999999999999999999999999999887788899999999999999999999999988887644 579


Q ss_pred             EEEeCCCCCHHHHHHHHHHh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l  117 (119)
                      ||+||||++.+|++.+.+.+
T Consensus        80 vIlDg~~~~~~~~~~l~~~~   99 (223)
T 2xb4_A           80 WLLDGFPRNTVQAQKLFEAL   99 (223)
T ss_dssp             EEEESCCCSHHHHHHHHHHH
T ss_pred             EEEeCCcCCHHHHHHHHHHH
Confidence            99999999999999887653

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.85  E-value=6.2e-21  Score=130.79  Aligned_cols=100  Identities=45%  Similarity=0.831  Sum_probs=87.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC-
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC-   94 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~-   94 (119)
                      .+..|+|+|+|||||||+|+.|++++++.++++|++++.....++..+..+.+++..|..++++.+..++.+++....+ 
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   83 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence            3568999999999999999999999999999999999998777888999999999999999999888888888765332 


Q ss_pred             CCcEEEeCCCCCHHHHHHHHH
Q psy9244          95 QNGFLLDGFPRTVPQAEKVYS  115 (119)
Q Consensus        95 ~~g~vldg~P~~~~q~~~l~~  115 (119)
                      ..+||+||||++.+|++.+.+
T Consensus        84 ~~~~vidg~~~~~~~~~~l~~  104 (222)
T 1zak_A           84 ENGWLLDGYPRSYSQAMALET  104 (222)
T ss_dssp             HTCEEEESCCCSHHHHHHHHT
T ss_pred             CCcEEEECCCCCHHHHHHHHH
Confidence            468999999999999887764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.84  E-value=2.8e-20  Score=127.98  Aligned_cols=99  Identities=39%  Similarity=0.694  Sum_probs=87.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      ++..|+|+|+|||||||+|+.|++++++.++++|++++.....++..+..+.+++..|..++++....++.+++.+. ..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~-~~   84 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL-TQ   84 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-TT
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-cC
Confidence            35689999999999999999999999999999999999988788888999999999999999998888888888753 35


Q ss_pred             CcEEEeCCCCCHHHHHHHHH
Q psy9244          96 NGFLLDGFPRTVPQAEKVYS  115 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~  115 (119)
                      .+||+||||++..|++.+++
T Consensus        85 ~~~vid~~~~~~~~~~~l~~  104 (227)
T 1zd8_A           85 YSWLLDGFPRTLPQAEALDR  104 (227)
T ss_dssp             SCEEEESCCCSHHHHHHHHT
T ss_pred             CCEEEeCCCCCHHHHHHHHH
Confidence            68999999999999877754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.82  E-value=1.3e-19  Score=121.32  Aligned_cols=102  Identities=46%  Similarity=0.723  Sum_probs=87.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC-CC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP-EC   94 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~-~~   94 (119)
                      ++..|+|+|+|||||||+|+.|++++++.+++.+++++.....++..+..+.+++..|..++.+.+..++...+... ..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   87 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNT   87 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhcccc
Confidence            45689999999999999999999999999999999999987777888999999888899899888877777766542 23


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          95 QNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        95 ~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      +.+||+||||++.++++.+.+.+
T Consensus        88 ~~~vi~d~~~~~~~~~~~~~~~~  110 (196)
T 2c95_A           88 SKGFLIDGYPREVQQGEEFERRI  110 (196)
T ss_dssp             CSCEEEESCCCSHHHHHHHHHHT
T ss_pred             CCcEEEeCCCCCHHHHHHHHHhc
Confidence            57999999999999988776643

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.82  E-value=9.7e-20  Score=123.02  Aligned_cols=106  Identities=36%  Similarity=0.626  Sum_probs=86.6

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh-cCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhc
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS-SGSNLGKKLKETMDAGKLVSDELVVDLISNNLD   90 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~   90 (119)
                      -.+..+..|+|+|+|||||||+|+.|++++|+.+++.|++++.... .++..++.++.++..|...++++...++.+.+.
T Consensus        10 ~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~   89 (203)
T 1ukz_A           10 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAIS   89 (203)
T ss_dssp             SCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence            3456677899999999999999999999999999999999988754 566778888888888988888877777766654


Q ss_pred             CC-CCC-CcEEEeCCCCCHHHHHHHHHHh
Q psy9244          91 KP-ECQ-NGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        91 ~~-~~~-~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      .. ..+ .+||+||||++.+++..|++.+
T Consensus        90 ~~l~~g~~~~i~dg~~~~~~~~~~~~~~~  118 (203)
T 1ukz_A           90 DNVKANKHKFLIDGFPRKMDQAISFERDI  118 (203)
T ss_dssp             HHHHTTCCEEEEETCCCSHHHHHHHHHHT
T ss_pred             hhhccCCCeEEEeCCCCCHHHHHHHHHhc
Confidence            32 112 5899999999999998887654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.82  E-value=3.4e-19  Score=118.76  Aligned_cols=101  Identities=36%  Similarity=0.571  Sum_probs=89.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN   96 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~   96 (119)
                      +..|+|+|+|||||||+|+.|++++++.+++.|++++.....++..+..+.+++..|...+++....++...+... ...
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~-~~~   84 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN-QGK   84 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS-TTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc-CCC
Confidence            4689999999999999999999999999999999999888777888999999999999899888888888888765 456


Q ss_pred             cEEEeCCCCCHHHHHHHHHHhh
Q psy9244          97 GFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        97 g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      ++|+||||++.++++.+.+.+.
T Consensus        85 ~vi~d~~~~~~~~~~~~~~~~~  106 (194)
T 1qf9_A           85 NFLVDGFPRNEENNNSWEENMK  106 (194)
T ss_dssp             CEEEETCCCSHHHHHHHHHHHT
T ss_pred             CEEEeCcCCCHHHHHHHHHHHh
Confidence            8999999999999988876543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.81  E-value=3.9e-19  Score=118.38  Aligned_cols=97  Identities=45%  Similarity=0.818  Sum_probs=85.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      .+..|+|+|+|||||||+|+.|++++|+.+++.|++++.....+++.+..+.+++..|...+++.+..++.+.+..    
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~----   78 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAE----   78 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCS----
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcC----
Confidence            4568999999999999999999999999999999999988777788889999999999999999888888887753    


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh
Q psy9244          96 NGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~~l  117 (119)
                       +||+||||++..|.+.+++.+
T Consensus        79 -~~i~dg~~~~~~~~~~l~~~l   99 (186)
T 3cm0_A           79 -RVIFDGFPRTLAQAEALDRLL   99 (186)
T ss_dssp             -EEEEESCCCSHHHHHHHHHHH
T ss_pred             -CEEEeCCCCCHHHHHHHHHHH
Confidence             499999999999887776544

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.80  E-value=4.5e-19  Score=118.93  Aligned_cols=100  Identities=38%  Similarity=0.648  Sum_probs=86.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC-CCC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP-ECQ   95 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~-~~~   95 (119)
                      +..|+|+|+|||||||+|+.|++++++.+++.|++++.....+++.+..+.+++..|..++++.+..++.+.+... ..+
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~   91 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGDT   91 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccccC
Confidence            4689999999999999999999999999999999999988777888889999998899899988888777766543 235


Q ss_pred             CcEEEeCCCCCHHHHHHHHHH
Q psy9244          96 NGFLLDGFPRTVPQAEKVYSL  116 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~~  116 (119)
                      .+||+||||++.+|++.+.+.
T Consensus        92 ~~vi~dg~~~~~~~~~~l~~~  112 (199)
T 2bwj_A           92 RGFLIDGYPREVKQGEEFGRR  112 (199)
T ss_dssp             SCEEEETCCSSHHHHHHHHHH
T ss_pred             ccEEEeCCCCCHHHHHHHHHh
Confidence            789999999999998877653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.78  E-value=3.1e-18  Score=114.26  Aligned_cols=101  Identities=35%  Similarity=0.626  Sum_probs=81.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc-CCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC----
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS-GSNLGKKLKETMDAGKLVSDELVVDLISNNLDK----   91 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~----   91 (119)
                      +..|+|+|+|||||||+|+.|++++|+.+++.|++++..... .+..+..+.+++..|...++++...++...+..    
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~   82 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   82 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhcc
Confidence            467999999999999999999999999999999999887653 456688888888889888888776666555432    


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          92 PECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        92 ~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      .....+||+||||++.++.+.+.+.+
T Consensus        83 ~~~~~~vi~dg~~~~~~~~~~~~~~~  108 (196)
T 1tev_A           83 NAQKNKFLIDGFPRNQDNLQGWNKTM  108 (196)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHH
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHHh
Confidence            22356899999999999887766543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.70  E-value=3.7e-16  Score=108.56  Aligned_cols=98  Identities=37%  Similarity=0.666  Sum_probs=81.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      ++.+|+|+|++||||||+++.|++++|+.+++.++++..........+..+..+++.+..+++..+.+.+...+... ..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~-~~  104 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR-RG  104 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC-TT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc-CC
Confidence            46789999999999999999999999999999999988766555667777888888888899988888887777543 34


Q ss_pred             CcEEEeCCCCCHHHHHHHH
Q psy9244          96 NGFLLDGFPRTVPQAEKVY  114 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~  114 (119)
                      .+||+||||++..+++.+.
T Consensus       105 ~~~il~g~~~~~~~~~~l~  123 (246)
T 2bbw_A          105 QHWLLDGFPRTLGQAEALD  123 (246)
T ss_dssp             SCEEEESCCCSHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHH
Confidence            6899999999987776654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.61  E-value=6.4e-15  Score=96.13  Aligned_cols=94  Identities=24%  Similarity=0.328  Sum_probs=69.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcC----CcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSG----SNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE   93 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~   93 (119)
                      +.|+|+|+|||||||+|+.| +++|+.++++++++++.....    .........+...   .+++.+..++.+.+.. .
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-~   76 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-S   76 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS-C
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh-c
Confidence            47899999999999999999 999999999999999876542    2233333333322   2234455566666643 3


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          94 CQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        94 ~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      ....||+||+ ++..+.+.+.+.+
T Consensus        77 ~~~~vi~dg~-~~~~~~~~l~~~~   99 (179)
T 3lw7_A           77 NHDLVVFDGV-RSLAEVEEFKRLL   99 (179)
T ss_dssp             CCSCEEEECC-CCHHHHHHHHHHH
T ss_pred             CCCeEEEeCC-CCHHHHHHHHHHh
Confidence            4678999999 9999999988765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.55  E-value=1.6e-14  Score=95.13  Aligned_cols=98  Identities=13%  Similarity=0.108  Sum_probs=63.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh-HcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK-KYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~-~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      +..|+|+|+|||||||+|+.|++ .+++.+++.+.+...... ... +. ...+...+.....+.+..++...+.....+
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g   78 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGGDSV   78 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCC-GG-GCCCCHHHHHHHHHHHHHHHHHHHTSCSSC
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCc-cc-hhhhchhhhhHHHHHHHHHHHHHHhhccCC
Confidence            35789999999999999999999 689999998665443332 111 00 000001111122344556666666433446


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh
Q psy9244          96 NGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      .++|+||++.+..+.+.+.+.+
T Consensus        79 ~~vi~d~~~~~~~~~~~l~~~~  100 (181)
T 1ly1_A           79 KGVIISDTNLNPERRLAWETFA  100 (181)
T ss_dssp             CEEEECSCCCSHHHHHHHHHHH
T ss_pred             CeEEEeCCCCCHHHHHHHHHHH
Confidence            7999999999988877776543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.40  E-value=1e-12  Score=93.31  Aligned_cols=96  Identities=15%  Similarity=0.132  Sum_probs=61.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN   96 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~   96 (119)
                      ..|+|+|+|||||||+|+.|++++ ++.+++.|++. ......+. +. ...+...+.....+.+.+.+...+.....+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r-~~~~~~~~-g~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~   79 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYR-QSIMAHEE-RD-EYKYTKKKEGIVTGMQFDTAKSILYGGDSVK   79 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHH-HHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSCTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHH-HHhccCCc-cc-ccccchhhhhHHHHHHHHHHHHHHhhccCCC
Confidence            578999999999999999999985 99999998554 43332111 00 0011111112223444455566553323457


Q ss_pred             cEEEeCCCCCHHHHHHHHHH
Q psy9244          97 GFLLDGFPRTVPQAEKVYSL  116 (119)
Q Consensus        97 g~vldg~P~~~~q~~~l~~~  116 (119)
                      ++|+||++.+..+.+.+.+.
T Consensus        80 ~vi~d~~~~~~~~~~~l~~~   99 (301)
T 1ltq_A           80 GVIISDTNLNPERRLAWETF   99 (301)
T ss_dssp             EEEECSCCCCHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            99999999998877777654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.30  E-value=1.3e-12  Score=86.67  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=36.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~~   57 (119)
                      +..|+|+|+|||||||+|+.|+++++     +.+++.++++++...
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~   48 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK   48 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh
Confidence            45799999999999999999999998     899999999887654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.29  E-value=1.6e-11  Score=81.58  Aligned_cols=40  Identities=25%  Similarity=0.237  Sum_probs=35.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      .+..|+|+|+|||||||+++.|++++++.+++.|++....
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~   43 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVM   43 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHH
Confidence            4568999999999999999999999999999998775544

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.29  E-value=6e-12  Score=84.70  Aligned_cols=90  Identities=21%  Similarity=0.239  Sum_probs=57.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      ++.+|+|+|+|||||||+++.|++.+|+.+++.|+++.....  .........   .|.....+....++....    ..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g--~~i~~~~~~---~~~~~~~~~e~~~l~~l~----~~   94 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH--KTVGELFTE---RGEAGFRELERNMLHEVA----EF   94 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT--SCHHHHHHH---HHHHHHHHHHHHHHHHHT----TC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC--CcHHHHHHh---cChHHHHHHHHHHHHHHh----hc
Confidence            356899999999999999999999999999999998876542  222222221   121111222233333322    23


Q ss_pred             CcEEEe---CCCCCHHHHHHHH
Q psy9244          96 NGFLLD---GFPRTVPQAEKVY  114 (119)
Q Consensus        96 ~g~vld---g~P~~~~q~~~l~  114 (119)
                      ..+||+   |.+...+..+.+.
T Consensus        95 ~~~vi~~ggg~~~~~~~~~~l~  116 (199)
T 3vaa_A           95 ENVVISTGGGAPCFYDNMEFMN  116 (199)
T ss_dssp             SSEEEECCTTGGGSTTHHHHHH
T ss_pred             CCcEEECCCcEEccHHHHHHHH
Confidence            578888   6676666655554

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.28  E-value=1.6e-11  Score=82.55  Aligned_cols=88  Identities=15%  Similarity=0.171  Sum_probs=57.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHH---HHHHHHHhhcC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL---VVDLISNNLDK   91 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~ll~~~l~~   91 (119)
                      ..+..|+|+|++||||||+|+.|++.+|+.+++.|++......          .....|..+.+..   ..+.+...+  
T Consensus        16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~l~~~~--   83 (202)
T 3t61_A           16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENI----------RKMSEGIPLTDDDRWPWLAAIGERL--   83 (202)
T ss_dssp             CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH----------HHHHHTCCCCHHHHHHHHHHHHHHH--
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH----------HHHhcCCCCCchhhHHHHHHHHHHH--
Confidence            3456899999999999999999999999999999887532111          0111122222221   112233333  


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHH
Q psy9244          92 PECQNGFLLDGFPRTVPQAEKVYS  115 (119)
Q Consensus        92 ~~~~~g~vldg~P~~~~q~~~l~~  115 (119)
                       ..+.++|+|+......+.+.+.+
T Consensus        84 -~~~~~vivd~~~~~~~~~~~l~~  106 (202)
T 3t61_A           84 -ASREPVVVSCSALKRSYRDKLRE  106 (202)
T ss_dssp             -TSSSCCEEECCCCSHHHHHHHHH
T ss_pred             -hcCCCEEEECCCCCHHHHHHHHH
Confidence             33568999988777777776665

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.27  E-value=3.4e-12  Score=84.55  Aligned_cols=39  Identities=26%  Similarity=0.275  Sum_probs=35.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~   56 (119)
                      ..|+|+|+|||||||+|+.|+++++     +.+++.++++.+.+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~   45 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA   45 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence            4789999999999999999999987     88999889887665

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.26  E-value=1.9e-11  Score=81.12  Aligned_cols=54  Identities=24%  Similarity=0.230  Sum_probs=41.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc---CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY---CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD   78 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~---~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~   78 (119)
                      .|+|+|+|||||||+|+.|++++   |+.++++++      ...+..+..+.+++..|...+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~------~~~~~~~~~i~~~~~~g~~~~~   58 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE------PGGTKVGEVLREILLTEELDER   58 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC------CCCCchHHHHHHHHcCCCCCHH
Confidence            68999999999999999999988   899998753      1234456667776766654443

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.23  E-value=3.1e-12  Score=86.27  Aligned_cols=89  Identities=17%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHH-h------
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISN-N------   88 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~-~------   88 (119)
                      ++..|+|+|+|||||||+|+.|+++++..+++++ ++++. ..++..+..+.+++..+..++......+... +      
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNE   86 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999988887773 33322 2235567777777766666665543332221 1      


Q ss_pred             hcC-CCCCCcEEEeCCCCC
Q psy9244          89 LDK-PECQNGFLLDGFPRT  106 (119)
Q Consensus        89 l~~-~~~~~g~vldg~P~~  106 (119)
                      +.. ......+|+|+|+.+
T Consensus        87 i~~~l~~~~~vi~D~~~~~  105 (212)
T 2wwf_A           87 IKSLLLKGIWVVCDRYAYS  105 (212)
T ss_dssp             HHHHHHHTCEEEEECCHHH
T ss_pred             HHHHHhCCCEEEEecchhh
Confidence            111 012357899999865

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=99.22  E-value=8.3e-11  Score=80.03  Aligned_cols=40  Identities=28%  Similarity=0.382  Sum_probs=36.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      +.+|.|+|++||||||+++.|++.+|+.+++.|++.+...
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~   44 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA   44 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhh
Confidence            3579999999999999999999999999999999998654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.21  E-value=6.9e-11  Score=82.40  Aligned_cols=96  Identities=21%  Similarity=0.313  Sum_probs=55.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHHHHHhc----CCcHHHHHHhhhhcCcccCHHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLRAEVSS----GSNLGKKLKETMDAGKLVSDELVVDLISNN   88 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~   88 (119)
                      ..+..|+|+|+|||||||+|+.|++.++  +.+++.|.+ +.....    ....+..+.++...   .....+..++...
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~---~~~~~~~~~~~~~  105 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKD---FAGKMVESLVTKL  105 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHH---HHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhH---HHHHHHHHHHHHH
Confidence            4467899999999999999999999986  556676654 222110    00000001111110   0012223333333


Q ss_pred             hcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          89 LDKPECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        89 l~~~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      +..   +.+|||||++++..+...+.+.+
T Consensus       106 ~~~---g~~vVid~~~~~~~~~~~~~~~l  131 (253)
T 2p5t_B          106 SSL---GYNLLIEGTLRTVDVPKKTAQLL  131 (253)
T ss_dssp             HHT---TCCEEEECCTTSSHHHHHHHHHH
T ss_pred             Hhc---CCCEEEeCCCCCHHHHHHHHHHH
Confidence            322   34799999999888877666654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.17  E-value=1e-10  Score=81.93  Aligned_cols=85  Identities=16%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH---cCcccc--chhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK---YCVCHL--STGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK   91 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~---~~~~~i--s~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~   91 (119)
                      +..|+|+|+|||||||+|+.|++.   +|+.++  +.|.+..... .-..          .+...........+...+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~-~~~~----------~~e~~~~~~~~~~i~~~l~~   72 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP-VWKE----------KYEEFIKKSTYRLIDSALKN   72 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS-SCCG----------GGHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh-hhhH----------HHHHHHHHHHHHHHHHHhhC
Confidence            568999999999999999999997   677776  7766543221 1010          11111122223344444432


Q ss_pred             CCCCCcEEEeCCCCCHHHHHHHHHH
Q psy9244          92 PECQNGFLLDGFPRTVPQAEKVYSL  116 (119)
Q Consensus        92 ~~~~~g~vldg~P~~~~q~~~l~~~  116 (119)
                          ..+|+|+.+....+.+.+.+.
T Consensus        73 ----~~vIiD~~~~~~~~~~~l~~~   93 (260)
T 3a4m_A           73 ----YWVIVDDTNYYNSMRRDLINI   93 (260)
T ss_dssp             ----SEEEECSCCCSHHHHHHHHHH
T ss_pred             ----CEEEEeCCcccHHHHHHHHHH
Confidence                579999987777666666543

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.16  E-value=4.9e-11  Score=88.75  Aligned_cols=78  Identities=15%  Similarity=0.153  Sum_probs=54.8

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP   92 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~   92 (119)
                      .+..+..|+|+|+|||||||+|+.|++++++.+++.|++-        .                ...+...+...+.. 
T Consensus       254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~~-  308 (416)
T 3zvl_A          254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALRQ-  308 (416)
T ss_dssp             CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHHT-
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHhc-
Confidence            3445678999999999999999999999999999998861        0                01122233333332 


Q ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          93 ECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        93 ~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                        +..+|+|+...+..+.+.+.+.+
T Consensus       309 --g~~vIiD~~~~~~~~r~~~~~~~  331 (416)
T 3zvl_A          309 --GKRVVIDNTNPDVPSRARYIQCA  331 (416)
T ss_dssp             --TCCEEEESCCCSHHHHHHHHHHH
T ss_pred             --CCcEEEeCCCCCHHHHHHHHHHH
Confidence              34688888877777776665544

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.16  E-value=3e-11  Score=85.99  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=56.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHHHHHHhcCCcHHHHHHhhhhcC----cccCHHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG----KLVSDELVVDLISNN   88 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~ll~~~   88 (119)
                      ..+..|+|+|+|||||||+|+.|++++  ++.++|.|.+... ...   ....+..+....    ......+...++...
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~-~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~  106 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ-HPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISRL  106 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT-STT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh-chh---hHHHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence            346789999999999999999999998  7888997665322 110   001111111100    011122233344444


Q ss_pred             hcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          89 LDKPECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        89 l~~~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      +..   +..+|+|+...+..+...+.+.+
T Consensus       107 l~~---g~~vIld~~~~~~~~~~~~~~~~  132 (287)
T 1gvn_B          107 SDQ---GYNLVIEGTGRTTDVPIQTATML  132 (287)
T ss_dssp             HHH---TCCEEECCCCCCSHHHHHHHHHH
T ss_pred             Hhc---CCeEEEECCCCCHHHHHHHHHHH
Confidence            432   45799999988877665555444

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.16  E-value=8.8e-11  Score=76.47  Aligned_cols=39  Identities=18%  Similarity=0.263  Sum_probs=35.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ++|+|+|+|||||||+|+.|++++++.+++.|++.+...
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~   39 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE   39 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc
Confidence            369999999999999999999999999999999987764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.15  E-value=9.5e-11  Score=76.57  Aligned_cols=38  Identities=16%  Similarity=0.205  Sum_probs=35.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      ..|+|+|+|||||||+|+.|++++|+.+++.|++++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~   40 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT   40 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH
Confidence            47999999999999999999999999999999988775

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.15  E-value=6.8e-11  Score=79.18  Aligned_cols=84  Identities=18%  Similarity=0.179  Sum_probs=53.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHH-----------H
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVV-----------D   83 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~   83 (119)
                      ++..|+|+|++||||||+++.|++++ |+.++++++.     ...+..++.+.+++..+..+......           +
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~-----~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~   77 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP-----QRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS   77 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS-----CTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC-----CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999998 5777765321     11334566677777655444433221           1


Q ss_pred             HHHHhhcCCCCCCcEEEeCCCCCH
Q psy9244          84 LISNNLDKPECQNGFLLDGFPRTV  107 (119)
Q Consensus        84 ll~~~l~~~~~~~g~vldg~P~~~  107 (119)
                      .+...+.   ....+|+|+||.+.
T Consensus        78 ~i~~~l~---~~~~vi~Dr~~~s~   98 (204)
T 2v54_A           78 FIQEQLE---QGITLIVDRYAFSG   98 (204)
T ss_dssp             HHHHHHH---TTCEEEEESCHHHH
T ss_pred             HHHHHHH---CCCEEEEECchhhH
Confidence            1122222   23468889998753

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.13  E-value=6.1e-11  Score=78.88  Aligned_cols=40  Identities=30%  Similarity=0.634  Sum_probs=36.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-cCccccchhHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-YCVCHLSTGDMLRAE   55 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-~~~~~is~~~l~~~~   55 (119)
                      ++.+|+|+|+|||||||+++.|++. +|+.++++|+++++.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~   49 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN   49 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh
Confidence            4568999999999999999999999 799999999998874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.12  E-value=6.4e-11  Score=77.36  Aligned_cols=42  Identities=24%  Similarity=0.241  Sum_probs=36.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      +...+|+|+|+|||||||+|+.|++++|+.+++.|+++++..
T Consensus         5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~   46 (168)
T 1zuh_A            5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV   46 (168)
T ss_dssp             ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             cccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh
Confidence            456789999999999999999999999999999999988764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.12  E-value=5.2e-11  Score=78.79  Aligned_cols=39  Identities=36%  Similarity=0.435  Sum_probs=36.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ++|+|+|+|||||||+|+.|++++|+.+++.|+++++..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~   41 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT   41 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc
Confidence            469999999999999999999999999999999988764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=99.12  E-value=1.4e-10  Score=77.89  Aligned_cols=48  Identities=21%  Similarity=0.284  Sum_probs=39.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKL   66 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~   66 (119)
                      .+|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i   49 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEV   49 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHH
Confidence            4799999999999999999999 99999999999887665443333333

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.09  E-value=8e-10  Score=74.30  Aligned_cols=40  Identities=33%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS   58 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~   58 (119)
                      .+|.|+|++||||||+++.|++ +|+.+++.|++.++....
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~   42 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAK   42 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccC
Confidence            5789999999999999999998 999999999998875543

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.09  E-value=1.1e-10  Score=77.27  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      +.+|+|+|+|||||||+|+.|++++|+.+++.|+++.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~   44 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT   44 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc
Confidence            5689999999999999999999999999999999887754

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.08  E-value=5.8e-10  Score=73.39  Aligned_cols=31  Identities=19%  Similarity=0.192  Sum_probs=24.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ++..|+|+|+|||||||+|+.|++++++.++
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            4578999999999999999999999998887

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.07  E-value=3.5e-10  Score=80.14  Aligned_cols=51  Identities=18%  Similarity=0.096  Sum_probs=42.7

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLG   63 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~   63 (119)
                      ..+..+..|+|+|++||||||+|+.|+ ++|+.+++.|++.++....+....
T Consensus        70 ~~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~  120 (281)
T 2f6r_A           70 ELPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAY  120 (281)
T ss_dssp             TSCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTH
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHH
Confidence            456677899999999999999999999 689999999999887765554433

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.07  E-value=3.8e-10  Score=77.81  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=59.4

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCc--cccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHH-HHHHhh
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCV--CHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD-LISNNL   89 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~--~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-ll~~~l   89 (119)
                      ...++..|+|.|++||||||+++.|++.++.  .++..      .....++.++.+++++..+....+....- ....+.
T Consensus        22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~------~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~   95 (229)
T 4eaq_A           22 SNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT------REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRR   95 (229)
T ss_dssp             CCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE------CTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee------cCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999999863  33322      22345677888998888877544443322 222333


Q ss_pred             cCC--------CCCCcEEEe----------CCCCCHHHH
Q psy9244          90 DKP--------ECQNGFLLD----------GFPRTVPQA  110 (119)
Q Consensus        90 ~~~--------~~~~g~vld----------g~P~~~~q~  110 (119)
                      ...        ..+..+|+|          |+|++..+.
T Consensus        96 ~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~  134 (229)
T 4eaq_A           96 EHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVE  134 (229)
T ss_dssp             HHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHH
T ss_pred             HHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHH
Confidence            221        124578889          999887654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.06  E-value=1.9e-10  Score=75.86  Aligned_cols=40  Identities=35%  Similarity=0.444  Sum_probs=36.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      .+..|+|+|+|||||||+++.|++++++.+++.++++++.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~   49 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE   49 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence            4567999999999999999999999999999999988765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.05  E-value=1.6e-10  Score=75.97  Aligned_cols=39  Identities=28%  Similarity=0.387  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .+|+|+|+|||||||+|+.|++++++.+++.|++++...
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~   43 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF   43 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc
Confidence            369999999999999999999999999999999887653

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.04  E-value=7.8e-10  Score=77.10  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=37.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..+.+|.|+|++||||||+++.|++++|+.+++.+.+.+...
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~   66 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLA   66 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence            345789999999999999999999999999999999986643

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.02  E-value=3.2e-10  Score=76.44  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=39.6

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS   58 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~   58 (119)
                      .+....|.|+|++||||||+|+.|++.+|+.++++|++.++....
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~   53 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE   53 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence            345578999999999999999999999999999999999887653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.01  E-value=2.1e-10  Score=79.79  Aligned_cols=40  Identities=18%  Similarity=0.111  Sum_probs=34.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcc----------ccchhHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC----------HLSTGDMLRA   54 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~----------~is~~~l~~~   54 (119)
                      ..+.+|.|+|++||||||+|+.|++.+|+.          +++.|++.+.
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~   69 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRV   69 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccc
Confidence            345789999999999999999999999987          6899988763

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.00  E-value=4.1e-10  Score=73.60  Aligned_cols=40  Identities=23%  Similarity=0.362  Sum_probs=35.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      +..|+|+|++||||||+++.|+..+++.+++.+++++...
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~   43 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT   43 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh
Confidence            4579999999999999999999999999999998877643

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=99.00  E-value=1.6e-09  Score=73.44  Aligned_cols=50  Identities=26%  Similarity=0.261  Sum_probs=40.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLK   67 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~   67 (119)
                      +..|+|+|++||||||+++.|++ +|+.+++.|++.++....+......+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~   53 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIA   53 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHH
Confidence            56899999999999999999998 999999999998886654443434443

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.99  E-value=5.3e-10  Score=75.26  Aligned_cols=62  Identities=23%  Similarity=0.321  Sum_probs=42.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE   79 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~   79 (119)
                      ++..|+|+|+|||||||+|+.|+++++..+++++.+ ++. ..++..+..+..++..+..++..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~   69 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDH   69 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHH
Confidence            457899999999999999999999987666665321 111 11244566666666655555544

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.99  E-value=2e-09  Score=75.34  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=37.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..+|+|+|++||||||+++.|++.+|+.+++.+++++...
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~   87 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM   87 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh
Confidence            5689999999999999999999999999999999888765

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.98  E-value=5.7e-09  Score=70.87  Aligned_cols=96  Identities=14%  Similarity=0.114  Sum_probs=58.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC---ccccchhHHHHHHHh-cC----CcH----------HHHHHhhhhcCcccCH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC---VCHLSTGDMLRAEVS-SG----SNL----------GKKLKETMDAGKLVSD   78 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~---~~~is~~~l~~~~~~-~~----~~~----------~~~~~~~~~~g~~~~~   78 (119)
                      ...|+|+|.|||||+|+|+.+.+.+|   +.++++++.+++... ..    ...          +..+......-.....
T Consensus        11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~   90 (202)
T 3ch4_B           11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP   90 (202)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence            45889999999999999999988784   778999999986432 11    010          1111100000000001


Q ss_pred             HHHHHHHHHhhcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          79 ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        79 ~~~~~ll~~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      ..+.+++.+   .. ....|||||. |...++++|++.+
T Consensus        91 ~~~~~~~~~---~~-~~~~vII~dv-R~~~Ev~~fr~~~  124 (202)
T 3ch4_B           91 GFFCRKIVE---GI-SQPIWLVSDT-RRVSDIQWFREAY  124 (202)
T ss_dssp             TTTHHHHSB---TC-CCSEEEECCC-CSHHHHHHHHHHH
T ss_pred             hHHHHHHHH---hc-CCCcEEEeCC-CCHHHHHHHHHhC
Confidence            111222222   22 2347999999 9999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.98  E-value=3e-10  Score=73.91  Aligned_cols=37  Identities=24%  Similarity=0.119  Sum_probs=33.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA   54 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~   54 (119)
                      ..|+|+|+|||||||+|+.|++++++.+++.+.+...
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~   38 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA   38 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence            4789999999999999999999999999998876544

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.97  E-value=6.6e-10  Score=74.18  Aligned_cols=42  Identities=21%  Similarity=0.127  Sum_probs=37.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      +.++..|.|+|++||||||+|+.|++. |+.+++.|++.++..
T Consensus         5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~   46 (203)
T 1uf9_A            5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR   46 (203)
T ss_dssp             -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc
Confidence            455678999999999999999999998 999999999987765

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.95  E-value=3.6e-10  Score=75.81  Aligned_cols=28  Identities=36%  Similarity=0.376  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +..|+|+|+|||||||+|+.|+++++..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            4689999999999999999999998763

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=98.94  E-value=1.4e-09  Score=83.16  Aligned_cols=99  Identities=14%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCcc-----ccchhHHHHHHHhcCCcHHHHHHhhhhc-Cc---ccCHHHHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVC-----HLSTGDMLRAEVSSGSNLGKKLKETMDA-GK---LVSDELVVD   83 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~-----~is~~~l~~~~~~~~~~~~~~~~~~~~~-g~---~~~~~~~~~   83 (119)
                      +...+..|+++|.|||||||+|+.|++.+++.     +++.|++.+........     .+++.. +.   .....+...
T Consensus        31 ~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~-----~~~f~~~~~~~~~~re~~~~~  105 (520)
T 2axn_A           31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSS-----YNFFRPDNEEAMKVRKQCALA  105 (520)
T ss_dssp             --CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCC-----GGGGCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCcc-----ccccCcccHHHHHHHHHHHHH
Confidence            34456789999999999999999999987543     46778876665432110     011111 10   011122212


Q ss_pred             HHH---HhhcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          84 LIS---NNLDKPECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        84 ll~---~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      .+.   ..+.. ..+..+|+|+...+..+-+.+.+.+
T Consensus       106 ~l~~~~~~L~~-~~g~~VIvDat~~~~~~R~~~~~~a  141 (520)
T 2axn_A          106 ALRDVKSYLAK-EGGQIAVFDATNTTRERRHMILHFA  141 (520)
T ss_dssp             HHHHHHHHHHH-SCCCEEEEESCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-cCCceEEecCCCCCHHHHHHHHHHH
Confidence            221   22211 2346899999988888777665544

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.93  E-value=5.2e-09  Score=71.51  Aligned_cols=56  Identities=23%  Similarity=0.154  Sum_probs=47.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETM   70 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~   70 (119)
                      .+....|.|+|.+||||||+++.|++ +|+.+++.|.+.++....+......+.+.+
T Consensus         6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~f   61 (210)
T 4i1u_A            6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTF   61 (210)
T ss_dssp             CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHH
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHh
Confidence            45567899999999999999999988 999999999999998877766555555444

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.89  E-value=1.8e-09  Score=74.89  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=37.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..+..|.|+|++||||||+|+.|++++|+.+++.+.+.+...
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~   48 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT   48 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence            456789999999999999999999999999999999987754

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.88  E-value=2.3e-09  Score=72.59  Aligned_cols=38  Identities=21%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..|.|.|++||||||+++.||+++|+.+++ +++++...
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a   44 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVA   44 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHH
Confidence            579999999999999999999999999999 88887644

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.87  E-value=2.5e-09  Score=71.59  Aligned_cols=38  Identities=34%  Similarity=0.356  Sum_probs=35.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .|.|+|++||||||+|+.|++.+|+.+++.|++.+...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~   41 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAA   41 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhh
Confidence            79999999999999999999999999999999987754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.87  E-value=2.5e-09  Score=70.08  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRA   54 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~   54 (119)
                      +..|+|+|+|||||||+++.|+++++..++  +.|++...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~   42 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA   42 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence            357999999999999999999999876544  57776553

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.85  E-value=3.3e-09  Score=72.95  Aligned_cols=44  Identities=34%  Similarity=0.496  Sum_probs=38.3

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .+..+.+|.|+|++||||||+++.|++++|+.+++.|++.+...
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~   55 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   55 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcce
Confidence            34566789999999999999999999999999999999998743

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.84  E-value=2.8e-09  Score=69.86  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~   52 (119)
                      .+..|+|+|++||||||+++.|++.+|..+++.+++.
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~   43 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH   43 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc
Confidence            3568999999999999999999999999999988874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.83  E-value=3.5e-09  Score=71.70  Aligned_cols=39  Identities=36%  Similarity=0.464  Sum_probs=36.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      +..|+|+|++||||||+++.|++.+|+.+++.|++.++.
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~   41 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL   41 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence            457999999999999999999999999999999998864

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.82  E-value=5.6e-09  Score=71.86  Aligned_cols=40  Identities=15%  Similarity=0.180  Sum_probs=35.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      ...|.|.|++||||||+++.||+++|+.+++ +++++....
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~   53 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE   53 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence            4689999999999999999999999999999 777777654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.77  E-value=5.9e-09  Score=69.98  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=33.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~   52 (119)
                      .+..|+|+|++||||||+++.|+..+|..+++.+++.
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~   64 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFH   64 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccc
Confidence            4568999999999999999999999999999988763

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.76  E-value=3.7e-09  Score=73.74  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=32.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML   52 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~   52 (119)
                      ..|+|+|++||||||+|+.||+++++.+++.|++.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~   36 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ   36 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence            36899999999999999999999999999998864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.68  E-value=1.5e-08  Score=68.16  Aligned_cols=41  Identities=24%  Similarity=0.224  Sum_probs=35.6

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRA   54 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~   54 (119)
                      ...+..|.|+|++||||||+++.|++.+ ++.+++.|+++..
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~   59 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKP   59 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccC
Confidence            3446789999999999999999999988 8999999987643

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.66  E-value=7.6e-09  Score=71.43  Aligned_cols=62  Identities=23%  Similarity=0.319  Sum_probs=40.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH---HHHHHHhcCCcHHHHHHhhhhcCcccCHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD---MLRAEVSSGSNLGKKLKETMDAGKLVSDE   79 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~---l~~~~~~~~~~~~~~~~~~~~~g~~~~~~   79 (119)
                      ++..|+|.|++||||||+++.|++.++..+++.+.   +.++  ..+++.|+.+++++..+...+..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~re--p~~t~~g~~ir~~l~~~~~~~~~   88 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTRE--PGGTRLGETLREILLNQPMDLET   88 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEES--SSSSHHHHHHHHHHHHSCCCHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecC--CCCChHHHHHHHHHHcCCCCHHH
Confidence            56789999999999999999999988544333221   1121  14567888899888877544433

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.63  E-value=1.6e-08  Score=73.10  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=32.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      +..|+|+||+||||||+|..||++++..+++.|.+
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            35799999999999999999999999999999875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.61  E-value=1.3e-08  Score=73.95  Aligned_cols=35  Identities=20%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      +..|+|+||+||||||++..||++++..+||.|.+
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~   74 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM   74 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence            35799999999999999999999999999998876

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.59  E-value=3.9e-08  Score=64.99  Aligned_cols=38  Identities=34%  Similarity=0.430  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDMLR   53 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~~   53 (119)
                      .+..|+|+|++||||||+++.|+..++  ..+++.+++..
T Consensus         8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~   47 (191)
T 1zp6_A            8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG   47 (191)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence            456899999999999999999998764  44777777654

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.59  E-value=3.4e-08  Score=65.70  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=26.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      .|+|.|++||||||+++.|+++++..++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            68999999999999999999999986654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.59  E-value=4.9e-08  Score=65.42  Aligned_cols=37  Identities=24%  Similarity=0.245  Sum_probs=30.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc---Ccc--ccchhHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY---CVC--HLSTGDM   51 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~---~~~--~is~~~l   51 (119)
                      ..+..|+|+|++||||||+++.|+..+   |..  +++.+++
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            456789999999999999999999987   555  7776655

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.55  E-value=6.7e-08  Score=72.77  Aligned_cols=99  Identities=12%  Similarity=0.148  Sum_probs=53.6

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHHhcCCcHHHHHHhhhhc-Cc---ccCHHHHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVSSGSNLGKKLKETMDA-GK---LVSDELVVD   83 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~~~~~~~~~~~~~~~~~-g~---~~~~~~~~~   83 (119)
                      +...+..|+++|.|||||||+++.|++.++     ...++.+++..........     .+++.. |.   ..-..++..
T Consensus        35 ~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~-----~~ifd~~g~~~~r~re~~~~~  109 (469)
T 1bif_A           35 MTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKS-----FEFFLPDNEEGLKIRKQCALA  109 (469)
T ss_dssp             ---CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCC-----GGGGCTTCHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCc-----ccccCCCCHHHHHHHHHHHHH
Confidence            345567899999999999999999999864     4455666655543321100     011111 11   000111111


Q ss_pred             HH---HHhhcCCCCCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          84 LI---SNNLDKPECQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        84 ll---~~~l~~~~~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      .+   ...+.. ..+.++|+|.--.+.++.+.+.+.+
T Consensus       110 ~l~~~~~~l~~-~~G~~vV~D~tn~~~~~R~~~~~~~  145 (469)
T 1bif_A          110 ALNDVRKFLSE-EGGHVAVFDATNTTRERRAMIFNFG  145 (469)
T ss_dssp             HHHHHHHHHHT-TCCSEEEEESCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCCEEEEeCCCCCHHHHHHHHHHH
Confidence            22   333322 2345799999877776666654443

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.54  E-value=2.5e-08  Score=70.96  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=30.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLR   53 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~   53 (119)
                      ++..|.|+|++||||||+|+.|++.++     +.+++.|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            456899999999999999999999887     78899988764

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.53  E-value=7.4e-08  Score=63.66  Aligned_cols=38  Identities=34%  Similarity=0.289  Sum_probs=30.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDM   51 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l   51 (119)
                      ..++..|+|+|++||||||+++.|++.++     +.+++.+.+
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~   52 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA   52 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence            34567899999999999999999998864     345665544

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.52  E-value=6.3e-08  Score=63.63  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=28.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc---Cccccch
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY---CVCHLST   48 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~---~~~~is~   48 (119)
                      .++..|+|+|++||||||+++.|++.+   |+.++.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~   39 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL   39 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence            346789999999999999999999987   8666644

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.52  E-value=7e-08  Score=65.16  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC------ccccchhHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC------VCHLSTGDM   51 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~------~~~is~~~l   51 (119)
                      ..+..|+|+|++||||||+++.|++.++      +.+++.+.+
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            4567899999999999999999999876      777775544

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.50  E-value=1.4e-07  Score=63.38  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=24.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..+..|+|+|+|||||||+++.|++.++
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            3456799999999999999999999873

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.48  E-value=9.9e-08  Score=67.76  Aligned_cols=40  Identities=23%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDMLR   53 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~~   53 (119)
                      .+.+..++|.||||+|||++|+.+|+.++..+  ++.+++..
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~   74 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES   74 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh
Confidence            34456788999999999999999999987655  45555543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.45  E-value=6.9e-08  Score=70.24  Aligned_cols=34  Identities=29%  Similarity=0.356  Sum_probs=31.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      ..|+|+||+||||||+|..|++.++..++|.|++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            4789999999999999999999999999999876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.44  E-value=1.2e-07  Score=68.34  Aligned_cols=35  Identities=29%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      +..|+|+||+||||||+|..||++++..++|.|.+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            45789999999999999999999999999988763

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.43  E-value=1.3e-07  Score=63.47  Aligned_cols=37  Identities=24%  Similarity=0.204  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC--ccccchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~--~~~is~~~l~   52 (119)
                      ++..|.|+|++||||||+++.|+..++  +.+++.+..+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~   43 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY   43 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence            456899999999999999999999888  7777766543

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.42  E-value=1.3e-07  Score=68.21  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=31.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM   51 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l   51 (119)
                      +..|+|+||+||||||+|..||++++..+||.|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            35789999999999999999999999999888865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.42  E-value=7.3e-08  Score=68.13  Aligned_cols=38  Identities=24%  Similarity=0.391  Sum_probs=29.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc---------CccccchhHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY---------CVCHLSTGDML   52 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~---------~~~~is~~~l~   52 (119)
                      .....++|+|+||+|||++|+.+++.+         .+..++..++.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~  111 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV  111 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence            345579999999999999999999876         34555665553

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.41  E-value=2.3e-07  Score=61.34  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=29.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc-cccchhHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDMLR   53 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~-~~is~~~l~~   53 (119)
                      ..++|+|++||||||+++.|+..++. .+++.+++.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~   39 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH   39 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence            46899999999999999999987754 6788776643

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.38  E-value=2e-07  Score=69.88  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML   52 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~   52 (119)
                      +..|++.||||+|||++|+++|.+.++.++  +..+++
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~  252 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV  252 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence            467999999999999999999999987665  444443

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=98.37  E-value=4.5e-07  Score=63.07  Aligned_cols=40  Identities=20%  Similarity=0.284  Sum_probs=35.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      ..|.|+|++||||||+|+.|++.+|+.+++.++-+++.+.
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~   41 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA   41 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence            4789999999999999999999999999999887766543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.37  E-value=2.3e-07  Score=69.60  Aligned_cols=37  Identities=24%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~   52 (119)
                      .+.-|++.||||+|||++|+++|.++++.++  +..+++
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~  252 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV  252 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence            3467999999999999999999999987765  444443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.36  E-value=2.3e-07  Score=69.35  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      +.-|++.||||+|||++|+++|..+++.++.+
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            45699999999999999999999998766543

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.36  E-value=1.8e-06  Score=66.35  Aligned_cols=41  Identities=29%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEV   56 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~   56 (119)
                      +.+..|+|+|++||||||+|+.|+++++     +.+++.|.+ +..+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i-r~~l  415 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV-RTHL  415 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH-HHHT
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh-hhhh
Confidence            4567899999999999999999999876     367776554 4443

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.36  E-value=2.1e-07  Score=69.07  Aligned_cols=32  Identities=31%  Similarity=0.413  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      +..|++.||||+|||.+|+++|.+.++.++++
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v  213 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV  213 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence            45699999999999999999999998776543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.36  E-value=2.5e-07  Score=63.10  Aligned_cols=53  Identities=28%  Similarity=0.428  Sum_probs=39.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC---ccccchhHHHHHHHhcCCcHHHHHHhhhhcCc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC---VCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK   74 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~---~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~   74 (119)
                      ++..|+|.|++||||||+++.|++.++   +.++.+.    +  ..+++.|+.+++++..+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~----~--p~~~~~g~~i~~~l~~~~   60 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR----E--PGGTPLAERIRELLLAPS   60 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE----S--SCSSHHHHHHHHHHHSCC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc----C--CCCCHHHHHHHHHHhcCC
Confidence            356789999999999999999999874   3333321    1  245678888888887763

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.34  E-value=5.5e-07  Score=59.10  Aligned_cols=40  Identities=25%  Similarity=0.272  Sum_probs=31.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc----C--ccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~~~l~~~~~   56 (119)
                      +..++|+||+|+||||+++.++..+    |  +.+++..+++....
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~   83 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK   83 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence            5679999999999999999998764    3  45678877776543

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.32  E-value=3.8e-07  Score=62.85  Aligned_cols=31  Identities=42%  Similarity=0.523  Sum_probs=26.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      .+..++|+|+||+|||++|+.+++.++..++
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~   68 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFL   68 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3456999999999999999999998876554

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.32  E-value=3e-07  Score=61.95  Aligned_cols=37  Identities=24%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGD   50 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~   50 (119)
                      ...+..|.|+|++||||||+++.|+..+.     ..+++.+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~   60 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG   60 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence            45678999999999999999999998764     55666554

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=3.6e-07  Score=68.86  Aligned_cols=33  Identities=27%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      .+..|+|.||||+|||++|+++|.+.++.++.+
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v  274 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV  274 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence            456799999999999999999999998776543

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.29  E-value=5e-07  Score=62.50  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=25.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      +..++|+|+||+||||+|+.++..++..++
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~   74 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFF   74 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence            346999999999999999999998875443

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.28  E-value=4.9e-07  Score=67.65  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      +.-|++.||||+|||.+|+++|.++++.++++
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v  247 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI  247 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence            45799999999999999999999998776543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.28  E-value=5.3e-07  Score=60.03  Aligned_cols=26  Identities=35%  Similarity=0.529  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..|+|+|++||||||+++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999999876

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.27  E-value=5.9e-07  Score=63.85  Aligned_cols=42  Identities=21%  Similarity=0.356  Sum_probs=32.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEVS   57 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~~   57 (119)
                      .+..++|+||||+|||++|++++..++..++  +..++......
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g   91 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG   91 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHT
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcC
Confidence            3457999999999999999999999876554  55566655443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.26  E-value=7.7e-07  Score=58.69  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..++|+||+||||||+++.|+..+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            345689999999999999999999865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.26  E-value=7e-07  Score=62.42  Aligned_cols=32  Identities=28%  Similarity=0.435  Sum_probs=27.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      .+..++|.|+||+|||++|+.+++.++..++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~   81 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR   81 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            35579999999999999999999998766543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.26  E-value=6.3e-07  Score=63.08  Aligned_cols=31  Identities=32%  Similarity=0.530  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      .+..++|+||||+|||++|+.+++.++..++
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~   83 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECSATFL   83 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence            3567999999999999999999999875544

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.25  E-value=9.3e-07  Score=60.98  Aligned_cols=29  Identities=17%  Similarity=0.011  Sum_probs=25.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      .+..|.|+|+.||||||+++.|+..+|..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            45689999999999999999999988765

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.24  E-value=7e-07  Score=63.97  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=29.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR   53 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~   53 (119)
                      +..++|.||||+|||++|+++|+..+..++  +..++..
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~   89 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS   89 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence            457999999999999999999999876554  5555543

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.23  E-value=8.7e-07  Score=59.76  Aligned_cols=28  Identities=36%  Similarity=0.481  Sum_probs=24.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..+..|+|+||+||||||+++.|++.+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3466899999999999999999998763

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=98.23  E-value=8.2e-07  Score=64.49  Aligned_cols=33  Identities=33%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      .+..++|+||||+|||++|+.+|+.++..++.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            345799999999999999999999988666543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.23  E-value=5.3e-07  Score=67.00  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      ..|+|+||+||||||+|..|+++++..+||.|.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds   35 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS   35 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence            468999999999999999999999988888876

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.22  E-value=9.9e-07  Score=63.04  Aligned_cols=38  Identities=18%  Similarity=0.191  Sum_probs=30.9

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDM   51 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l   51 (119)
                      ...+..|.|+|++||||||+++.|+..++       +.++++++.
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            35567899999999999999999998765       566666654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.22  E-value=2.7e-07  Score=63.98  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=38.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD   71 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~   71 (119)
                      ++..|+|.|++||||||+++.|++.++...++...+.++.  .+++.++.+++++.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep--~~t~~g~~ir~~l~   79 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP--GGTLLAEKLRALVK   79 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS--CSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC--CCCHHHHHHHHHHh
Confidence            3568999999999999999999998755444422222222  35677777777764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.21  E-value=1.3e-06  Score=58.13  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+||+||||||+++.|+..+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            35679999999999999999999765

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.20  E-value=1.9e-06  Score=57.32  Aligned_cols=39  Identities=18%  Similarity=0.152  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~~   56 (119)
                      ..++|+|+||+||||+++.++...     .+.+++..+++....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~   98 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK   98 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence            679999999999999999999865     345577777766554

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.19  E-value=9.8e-07  Score=61.54  Aligned_cols=32  Identities=31%  Similarity=0.386  Sum_probs=27.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      .+..++|+|+||+|||++|+.+++..+..++.
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~   94 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIK   94 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            34579999999999999999999998866543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.18  E-value=5e-07  Score=62.89  Aligned_cols=35  Identities=14%  Similarity=0.035  Sum_probs=27.3

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHc-Ccccc
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY-CVCHL   46 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~-~~~~i   46 (119)
                      ..-.++..|+|.|++||||||+++.|++.+ ++.++
T Consensus        19 ~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i   54 (263)
T 1p5z_B           19 SEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVV   54 (263)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             ccccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            333566789999999999999999999998 56555

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.18  E-value=8e-07  Score=67.80  Aligned_cols=37  Identities=5%  Similarity=0.057  Sum_probs=31.5

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCc-------cccchhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCV-------CHLSTGD   50 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~-------~~is~~~   50 (119)
                      .+.+.+|+|+|.+||||||+|+.|+++++.       .+++.|+
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            346689999999999999999999999985       5677665

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=98.18  E-value=1.1e-06  Score=66.07  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      +..|+++||||+||||+|+.||+.+++.++.++
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            457999999999999999999999987776544

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=98.17  E-value=1.1e-06  Score=68.45  Aligned_cols=40  Identities=23%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc---Cccccchh-HHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY---CVCHLSTG-DMLRAE   55 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~---~~~~is~~-~l~~~~   55 (119)
                      ++..|+|+|.|||||||+|+.|++++   |+.++.++ +.++..
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~   94 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG   94 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTT
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhc
Confidence            56789999999999999999999998   87776654 455443

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.17  E-value=1.5e-06  Score=62.70  Aligned_cols=38  Identities=16%  Similarity=0.142  Sum_probs=30.8

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC-------ccccchhHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHLSTGDM   51 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~is~~~l   51 (119)
                      ...+..|.|+|++||||||+++.|+..++       +.+++.|+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            45667899999999999999999988754       555777764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.16  E-value=1.2e-06  Score=61.61  Aligned_cols=30  Identities=30%  Similarity=0.392  Sum_probs=25.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      +..++|+|+||+|||++|+.+++.++..++
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~   79 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            456999999999999999999998875443

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.16  E-value=1.8e-06  Score=66.73  Aligned_cols=39  Identities=23%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcC------ccccchhHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYC------VCHLSTGDM   51 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~------~~~is~~~l   51 (119)
                      ....+..|+|+|.+||||||+|+.|+++++      +.+++.+.+
T Consensus       392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i  436 (573)
T 1m8p_A          392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV  436 (573)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred             ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence            345667899999999999999999999875      345555443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.15  E-value=1.4e-06  Score=62.64  Aligned_cols=30  Identities=30%  Similarity=0.422  Sum_probs=25.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-Cccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-CVCH   45 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-~~~~   45 (119)
                      .+..|+|.||||+|||++|+++|+.+ +..+
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~   74 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEANNSTF   74 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTTSCEE
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHcCCCcE
Confidence            34679999999999999999999987 5444

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.15  E-value=1.2e-06  Score=59.94  Aligned_cols=53  Identities=21%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAG   73 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g   73 (119)
                      ++..|+|.|++||||||+++.|++.++...    .++++. ..+++.|+.+++++...
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~----~~~~ep-~~~t~~g~~ir~~l~~~   56 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC----KLLKFP-ERSTRIGGLINEYLTDD   56 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCSSE----EEEESS-CTTSHHHHHHHHHHHCT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcccc----eEEEec-CCCChHHHHHHHHHHhc
Confidence            467899999999999999999999987521    111211 23567788888877654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.15  E-value=1.1e-05  Score=57.96  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..++|+|+||+||||+++.+++.+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            345679999999999999999999876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.15  E-value=1.5e-06  Score=61.19  Aligned_cols=28  Identities=32%  Similarity=0.528  Sum_probs=24.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      .++|+|||||||||+++.+|..++...+
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~~~~~i   73 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANESGLNFI   73 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred             eEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence            3999999999999999999998765443

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.15  E-value=6.3e-07  Score=62.19  Aligned_cols=30  Identities=37%  Similarity=0.525  Sum_probs=25.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ..++|+|+||+|||++|+.+++..+..++.
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~   74 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFS   74 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            348999999999999999999988765543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=98.14  E-value=1.5e-06  Score=63.33  Aligned_cols=31  Identities=35%  Similarity=0.439  Sum_probs=26.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ...++|+|+||+|||++|+.+++.++..++.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~  102 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAI  102 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            4569999999999999999999998755543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.14  E-value=1.2e-06  Score=57.67  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=22.5

Q ss_pred             CCCCCCCCCCCCCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244           1 MAPLAYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus         1 ~~~~~~~~~~~~~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      |.+.+.++++.+.+....+|+|+|.+|+||||+...|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A            1 MGSSHHHHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             ---------------CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            445556666667778888999999999999999999875

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.14  E-value=1.3e-06  Score=63.51  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=29.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR   53 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~   53 (119)
                      +..|+|+||||+|||++|+++++.++..++  +..+++.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~  122 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS  122 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence            356999999999999999999999886654  4455543

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.12  E-value=2.2e-06  Score=57.45  Aligned_cols=38  Identities=24%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchhHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGDM   51 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~~l   51 (119)
                      +..+..|.|+|++||||||+++.|+..+   +  +.+++.+..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            3456789999999999999999999864   3  344455544

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.12  E-value=4e-07  Score=61.01  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=22.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      .|+|.|++||||||+++.|++.++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5899999999999999999998753

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.11  E-value=3.2e-06  Score=58.10  Aligned_cols=57  Identities=21%  Similarity=0.246  Sum_probs=35.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCc-cccchhHHHHHHHhcCCcHHHHHHhhhhc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCV-CHLSTGDMLRAEVSSGSNLGKKLKETMDA   72 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~-~~is~~~l~~~~~~~~~~~~~~~~~~~~~   72 (119)
                      ..++..|+|.|++||||||+++.|++.++. ..+++-.+.++  ..+++.++.+++++..
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre--P~~t~~g~~ir~~l~~   75 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE--PGGTLLNESVRNLLFK   75 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES--SCSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC--CCCChHHHHHHHHHhC
Confidence            345678999999999999999999987654 22211100001  1245566666666553

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.11  E-value=6.9e-06  Score=55.58  Aligned_cols=56  Identities=20%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE   79 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~   79 (119)
                      .-|+|-|+.||||||+++.|++.+  |..++...      ...+++.++.+++++..+..++..
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~------eP~~t~~g~~ir~~l~~~~~~~~~   60 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIR   60 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE------SSTTCHHHHHHHHHHHSSCCCCHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee------CCCCChHHHHHHHHHhcccCCCHH
Confidence            357888999999999999999887  33333221      013456777777777666655544

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.11  E-value=3e-06  Score=60.44  Aligned_cols=39  Identities=21%  Similarity=0.148  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~   55 (119)
                      +..++|+|+||+||||+++.++..+     .+.+++..++....
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~   80 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM   80 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Confidence            4569999999999999999999865     35677777765443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.11  E-value=2.2e-06  Score=55.61  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..++|+|+||+|||++++.+++.+
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999875

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.10  E-value=2e-06  Score=62.56  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=29.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDM   51 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l   51 (119)
                      .+..++|+|+||+|||++|+++++..+..++  +..++
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l  153 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL  153 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence            4567999999999999999999999876554  44443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.10  E-value=1.8e-06  Score=58.27  Aligned_cols=37  Identities=16%  Similarity=0.065  Sum_probs=29.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~   52 (119)
                      ....++|+|+||+||||+++.+++.++     +.+++..++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            356799999999999999999998643     4566666544

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=98.10  E-value=1.8e-06  Score=58.58  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=28.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      ...|+|+|++||||||+|..|+++.+ .+++.|.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs   66 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR   66 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence            45789999999999999999999876 6676654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.10  E-value=2.1e-06  Score=61.11  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=30.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcC-------cccc-chhHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYC-------VCHL-STGDML   52 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~-------~~~i-s~~~l~   52 (119)
                      +..+..|.|+|++||||||+++.|+..++       ...+ +.|+.+
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            44677899999999999999999998764       3444 777654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.09  E-value=1e-06  Score=64.49  Aligned_cols=29  Identities=38%  Similarity=0.418  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      ..+|+|+|+|||||||+++.|++.+++.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            35799999999999999999999998877

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.09  E-value=2.5e-06  Score=58.84  Aligned_cols=33  Identities=36%  Similarity=0.492  Sum_probs=25.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDM   51 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l   51 (119)
                      .++|+|||||||||+++.++...+..+  ++..++
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~   85 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF   85 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence            499999999999999999998875443  444443

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.08  E-value=3.5e-06  Score=57.44  Aligned_cols=52  Identities=19%  Similarity=0.285  Sum_probs=36.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc-chhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL-STGDMLRAEVSSGSNLGKKLKETMD   71 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i-s~~~l~~~~~~~~~~~~~~~~~~~~   71 (119)
                      +..|+|.|++||||||+++.|++.+....+ ++ .+.++  ..++++++.+++++.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~re--p~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTRE--PGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEES--SCSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeC--CCCCHHHHHHHHHHh
Confidence            567899999999999999999988743322 11 11111  235678888888876

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.08  E-value=1.7e-06  Score=56.15  Aligned_cols=25  Identities=44%  Similarity=0.525  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...++|+|+||+|||++++.+++.+
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999999875

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.07  E-value=2.5e-06  Score=56.54  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=23.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      .++.|+|++||||||+.+.|+..+++
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            36899999999999999999987763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.07  E-value=2.6e-06  Score=61.34  Aligned_cols=27  Identities=37%  Similarity=0.550  Sum_probs=23.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      ..++|+||||+||||+++.++..++..
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~   78 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTN   78 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            568999999999999999999987643

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.07  E-value=2.8e-06  Score=58.31  Aligned_cols=27  Identities=26%  Similarity=0.224  Sum_probs=24.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-Cc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-CV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-~~   43 (119)
                      +..|+|.|++||||||+++.|++.+ ++
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~   29 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            5689999999999999999999998 44

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.06  E-value=2.1e-06  Score=68.57  Aligned_cols=38  Identities=24%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLR   53 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~   53 (119)
                      .+..|+|.||||+|||++|+++|.++++.++  +..+++.
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s  276 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS  276 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence            4567999999999999999999999987665  4445543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.06  E-value=2.8e-06  Score=62.30  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML   52 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~   52 (119)
                      +..++|+|+||+|||++|+.+|++++..++  +..++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~  185 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT  185 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence            468999999999999999999999876654  444443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.06  E-value=2.1e-06  Score=55.32  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~~l~   52 (119)
                      ....++|+|++||||||+++.++..+   |  ..+++..++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~   76 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP   76 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence            45679999999999999999999865   5  5566655443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=98.05  E-value=2.6e-06  Score=63.87  Aligned_cols=30  Identities=37%  Similarity=0.548  Sum_probs=25.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC--cccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC--VCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~--~~~i   46 (119)
                      +..++|.||||+|||++|+.+|+.++  +.++
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~   94 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFC   94 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence            35799999999999999999999987  4444

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.04  E-value=2.9e-06  Score=60.71  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=26.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      ..++|+|+||+|||++|+.+++.++..++.+
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~   86 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSANIKTT   86 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence            4599999999999999999999987665443

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.04  E-value=2.5e-06  Score=55.87  Aligned_cols=33  Identities=30%  Similarity=0.227  Sum_probs=24.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      .+..+.|+|++||||||+++.+..  +..+++.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~   40 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDF   40 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHH
Confidence            456889999999999999997642  444455443

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.00  E-value=4.2e-06  Score=62.63  Aligned_cols=40  Identities=28%  Similarity=0.425  Sum_probs=27.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-Ccc--ccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-CVC--HLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-~~~--~is~~~l~~~~~   56 (119)
                      +..|+|.||||+|||++|+++|..+ +..  .++..+++....
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~  209 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWL  209 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-------
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhc
Confidence            4679999999999999999999987 544  456666655433

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.00  E-value=4e-06  Score=63.50  Aligned_cols=30  Identities=33%  Similarity=0.480  Sum_probs=26.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ..|+|+||||+|||++|++++.+.+..++.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~   79 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPFFH   79 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            459999999999999999999998766553

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.00  E-value=5.9e-06  Score=55.78  Aligned_cols=27  Identities=15%  Similarity=0.263  Sum_probs=23.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ++..|+|+||+||||||+++.|.+.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456789999999999999999998764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.00  E-value=3.9e-06  Score=53.43  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...|+|.|+||+|||++|+.+++..
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhC
Confidence            3459999999999999999998764

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.99  E-value=4.8e-06  Score=58.27  Aligned_cols=28  Identities=36%  Similarity=0.534  Sum_probs=23.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      .++|+|+|||||||+++.++...+..++
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i  102 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEARVPFI  102 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eEEEECCCcChHHHHHHHHHHHcCCCEE
Confidence            3899999999999999999988754433

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.98  E-value=5e-05  Score=54.74  Aligned_cols=23  Identities=39%  Similarity=0.599  Sum_probs=21.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|+|+||+||||+++.+++.+
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999999999999876

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.98  E-value=6.5e-06  Score=58.86  Aligned_cols=41  Identities=17%  Similarity=0.097  Sum_probs=32.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc------CccccchhHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY------CVCHLSTGDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~------~~~~is~~~l~~~~~~   57 (119)
                      ...++|.|+||+|||++|.+++...      .+.+++..+++.+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~  198 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN  198 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHH
Confidence            4679999999999999999998743      2455788887776543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.97  E-value=4.3e-06  Score=56.01  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..++|+||+||||||+.+.|+..+
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578999999999999999998754

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.97  E-value=4.8e-06  Score=63.35  Aligned_cols=31  Identities=42%  Similarity=0.487  Sum_probs=27.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ...++|+||||+|||++|+.+++.+++.++.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            4579999999999999999999998876653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.97  E-value=3.6e-06  Score=54.87  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=22.0

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +.+.+..+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcC
Confidence            55566789999999999999999999853

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.97  E-value=1.9e-06  Score=54.87  Aligned_cols=36  Identities=25%  Similarity=0.152  Sum_probs=27.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC-ccccchhHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC-VCHLSTGDMLR   53 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~-~~~is~~~l~~   53 (119)
                      ..|+|.|+||+|||++|+.+++..+ +.+++..++..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~   64 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLI   64 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHH
T ss_pred             CcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCCh
Confidence            4599999999999999999988765 45556555433

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.96  E-value=3.3e-05  Score=54.87  Aligned_cols=31  Identities=19%  Similarity=0.156  Sum_probs=25.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      ..+++.|+||+|||++++.+++.++..++.+
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i   79 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDVNADMMFV   79 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence            3567778899999999999999988666544

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.94  E-value=2.2e-05  Score=52.74  Aligned_cols=23  Identities=39%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      -|+|-|.-||||||+++.|++.+
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L   24 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYL   24 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47888999999999999999876

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.93  E-value=7.5e-06  Score=53.63  Aligned_cols=36  Identities=14%  Similarity=0.060  Sum_probs=25.6

Q ss_pred             CCCCCCCCCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244           5 AYPLPKESHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus         5 ~~~~~~~~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++|+..........+|+|+|.+|+||||+...|...
T Consensus        10 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           10 HSSGLVPRGSDYMFKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             ----CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cccCCCCcccCceeEEEEECCCCCCHHHHHHHHHcC
Confidence            333333444555689999999999999999999753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.92  E-value=3.4e-06  Score=64.93  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC------ccccchhHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC------VCHLSTGDMLR   53 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~------~~~is~~~l~~   53 (119)
                      .++..|+|+|++||||||+++.|+..++      +.+++.+++..
T Consensus       367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~  411 (552)
T 3cr8_A          367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR  411 (552)
T ss_dssp             GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred             ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence            4567899999999999999999999873      44577666543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.91  E-value=6.8e-06  Score=54.98  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=20.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~   41 (119)
                      |+|+||+||||||+++.|.+++
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=97.91  E-value=4.8e-06  Score=54.59  Aligned_cols=29  Identities=28%  Similarity=0.283  Sum_probs=22.0

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+..+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPS   44 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence            55566789999999999999999999754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.90  E-value=8e-06  Score=61.29  Aligned_cols=30  Identities=37%  Similarity=0.452  Sum_probs=25.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ..++|+||||+||||+|+.|++.++..++.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~   80 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVER   80 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            468999999999999999999988765543

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.89  E-value=8.2e-06  Score=61.92  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=29.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML   52 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~   52 (119)
                      +..++|+|+||+|||++|++++...+..++  +..++.
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~  275 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM  275 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence            456999999999999999999999876554  555554

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.89  E-value=5.8e-06  Score=56.30  Aligned_cols=26  Identities=38%  Similarity=0.496  Sum_probs=17.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHH-hHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFA-KKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la-~~~   41 (119)
                      .+..+.|+||+||||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            45688999999999999999999 543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.89  E-value=7.8e-06  Score=53.54  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+..+|+|+|.+|+||||+...|..
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHc
Confidence            5566678999999999999999999974

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.89  E-value=9.6e-06  Score=57.12  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..++|+|+||+|||++|+.+++.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~   71 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATL   71 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHH
Confidence            369999999999999999999875

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.89  E-value=9.8e-06  Score=53.21  Aligned_cols=29  Identities=14%  Similarity=0.198  Sum_probs=23.2

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.+..+|+|+|.+|+||||+...+...
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            44445579999999999999999887653

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.88  E-value=8e-06  Score=55.64  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=24.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ..++|.||||+||||+|.+|++.++-.++
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            46999999999999999999988653333

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.88  E-value=1.4e-05  Score=59.73  Aligned_cols=39  Identities=15%  Similarity=0.096  Sum_probs=30.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc-----C--ccccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY-----C--VCHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~-----~--~~~is~~~l~~~~   55 (119)
                      ...++|.|+||+||||+++.++...     +  +.+++..++..+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~  175 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL  175 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence            4569999999999999999999865     3  4566777765443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.87  E-value=1.1e-05  Score=59.34  Aligned_cols=32  Identities=25%  Similarity=0.159  Sum_probs=26.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      .+..++|+|||||||||+++.|+..++..+++
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            45689999999999999999999887655544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.87  E-value=1.1e-05  Score=54.11  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=23.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+..+.|+||+||||||+++.|+..+
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3456789999999999999999998755

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.87  E-value=9.8e-06  Score=55.05  Aligned_cols=26  Identities=27%  Similarity=0.502  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+||+||||||+++.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            35678999999999999999998765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.86  E-value=1e-05  Score=58.39  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=24.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      +..++|.||||+|||++|+.+++.++.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            357999999999999999999998763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.85  E-value=1.2e-05  Score=54.86  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      +.+..++|+||+||||||+.+.|+..+.
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3456899999999999999999987653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.85  E-value=1.2e-05  Score=57.69  Aligned_cols=28  Identities=18%  Similarity=0.143  Sum_probs=24.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+..|.|+|++||||||+++.|+..+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll  114 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALL  114 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence            4567899999999999999999999754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.85  E-value=1.1e-05  Score=61.46  Aligned_cols=29  Identities=34%  Similarity=0.496  Sum_probs=24.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ..++|+||||+||||++++++...+..++
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i   93 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEARVPFI   93 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            34999999999999999999998765443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.84  E-value=1.1e-05  Score=53.30  Aligned_cols=23  Identities=35%  Similarity=0.697  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|+|+||+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999864

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.84  E-value=7.3e-06  Score=58.05  Aligned_cols=28  Identities=39%  Similarity=0.582  Sum_probs=24.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      ..++|+|+||+|||++|+.+++.++..+
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~~~   66 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGVNL   66 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            4699999999999999999999877554

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.83  E-value=1.6e-05  Score=53.16  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..++|+|++|+||||+++.+++.++
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999998764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.82  E-value=1.7e-05  Score=52.06  Aligned_cols=29  Identities=28%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .......+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            44455579999999999999999999753

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.82  E-value=8.9e-06  Score=65.05  Aligned_cols=41  Identities=22%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRAEV   56 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~~~   56 (119)
                      .+..|++.||||+|||.+|+++|.+.+..++  +..+++....
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~v  552 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF  552 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTC
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcccc
Confidence            3457999999999999999999999987665  5556665544

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.81  E-value=1.2e-05  Score=55.61  Aligned_cols=33  Identities=18%  Similarity=0.246  Sum_probs=26.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGD   50 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~   50 (119)
                      ..++|+|+||+|||++|+.+++..+     +.+++..+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~   67 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA   67 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence            4699999999999999999998653     44555443

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.81  E-value=6.8e-06  Score=58.71  Aligned_cols=28  Identities=25%  Similarity=0.242  Sum_probs=24.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      ..++|.|+||+|||++|+.+++.++..+
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~   74 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDF   74 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            3699999999999999999999876543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.81  E-value=1.4e-05  Score=60.23  Aligned_cols=25  Identities=36%  Similarity=0.555  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+++|+|+||+|||++|+.+++..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            3478999999999999999999985

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.80  E-value=1.3e-05  Score=61.49  Aligned_cols=29  Identities=38%  Similarity=0.440  Sum_probs=25.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      ++..++|+||||+||||+++.++..++..
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~  135 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK  135 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            45689999999999999999999987644

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.79  E-value=1.5e-05  Score=57.61  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..++|+|+||+|||++++.+++.+
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999999865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.78  E-value=9e-06  Score=58.62  Aligned_cols=27  Identities=11%  Similarity=-0.117  Sum_probs=24.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+.+++|.||||+|||++++.+++.+
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999999876

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=97.76  E-value=1.5e-05  Score=52.70  Aligned_cols=30  Identities=20%  Similarity=0.275  Sum_probs=22.2

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+.+..+|+|+|.+|+|||++.+.+..++
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence            556667899999999999999999887643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.76  E-value=2.1e-05  Score=51.87  Aligned_cols=26  Identities=19%  Similarity=0.022  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ....+.|+|++||||||++..|+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence            35678999999999999999998763

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.76  E-value=1.4e-05  Score=53.25  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC--ccccch
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC--VCHLST   48 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~--~~~is~   48 (119)
                      ++|+|++|||||++|..++.+ +  ..|+..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT   31 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence            789999999999999999977 5  345555

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.75  E-value=1.5e-05  Score=52.02  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +..+|+|+|.+|+||||+...|...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcC
Confidence            3479999999999999999999854

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.74  E-value=1.7e-05  Score=57.02  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..++|+|++|+||||+++.+++.+
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999999865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.74  E-value=1.7e-05  Score=53.38  Aligned_cols=25  Identities=32%  Similarity=0.268  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+.|+|++||||||+++.|+..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4568899999999999999999863

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.73  E-value=1.9e-05  Score=51.75  Aligned_cols=28  Identities=25%  Similarity=0.236  Sum_probs=23.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+.++..+|+|+|.+|+||||+...|..
T Consensus        17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           17 RGSKEEMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHHc
Confidence            5556678999999999999999999985

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.72  E-value=2.2e-05  Score=51.43  Aligned_cols=27  Identities=22%  Similarity=0.389  Sum_probs=23.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....+|+|+|.+|+||||+...|...
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcC
Confidence            444579999999999999999999863

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.69  E-value=2.5e-05  Score=61.77  Aligned_cols=25  Identities=36%  Similarity=0.555  Sum_probs=22.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+++|+|+||+|||++|+.||+.+
T Consensus       201 ~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999999986

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.69  E-value=3.1e-05  Score=51.73  Aligned_cols=34  Identities=32%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc--Cccccchh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTG   49 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~   49 (119)
                      .+..++|+|+|||||||++..++...  ++.+++..
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~   54 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE   54 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence            45689999999999999999998633  35555544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.68  E-value=3.1e-05  Score=55.54  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=23.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++.++.|+||+||||||+++.|+.-+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            45689999999999999999999765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.68  E-value=2.7e-05  Score=51.09  Aligned_cols=29  Identities=31%  Similarity=0.408  Sum_probs=22.0

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+....+|+|+|.+|+|||++...+...
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhC
Confidence            33445579999999999999999998753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.67  E-value=3.4e-05  Score=51.76  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~   48 (119)
                      .+..++|+|++||||||+++.++..     ..+.+++.
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~   59 (235)
T 2w0m_A           22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT   59 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence            4567899999999999999999853     23555554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.67  E-value=4.2e-05  Score=54.71  Aligned_cols=26  Identities=27%  Similarity=0.488  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..+.|+|++||||||+++.|+..+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999653

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.66  E-value=3.7e-05  Score=53.79  Aligned_cols=27  Identities=26%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .....++|+||+||||||+.+.|+..+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence            345689999999999999999998754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.66  E-value=4.2e-05  Score=49.71  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..+.|+|+.||||||+.+.|+..+
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            345688999999999999999999865

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.66  E-value=3.1e-05  Score=51.75  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++.|+|++||||||+.+.|+..+
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhc
Confidence            468999999999999999999765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.65  E-value=3e-05  Score=55.33  Aligned_cols=23  Identities=30%  Similarity=0.697  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|.|+||+||||+++.+++.+
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            49999999999999999999875

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.65  E-value=2.6e-05  Score=51.31  Aligned_cols=25  Identities=24%  Similarity=0.460  Sum_probs=21.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.+|+||||+...|..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4457899999999999999999964

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.65  E-value=1.7e-05  Score=56.64  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=22.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .++|+|+||+|||++|+.+++.++
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            499999999999999999998775

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.64  E-value=4e-05  Score=55.41  Aligned_cols=27  Identities=26%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++..+.|+|++||||||+++.|+..+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999999754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.64  E-value=3.1e-05  Score=53.32  Aligned_cols=25  Identities=32%  Similarity=0.505  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+||.||||||+.+.|+.-
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568899999999999999999853

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.63  E-value=4.8e-05  Score=54.15  Aligned_cols=29  Identities=24%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +...+.+++|+|++||||||++..||..+
T Consensus       101 ~~~~g~vi~lvG~~GsGKTTl~~~LA~~l  129 (296)
T 2px0_A          101 EPIHSKYIVLFGSTGAGKTTTLAKLAAIS  129 (296)
T ss_dssp             CCCCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567799999999999999999998643

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.63  E-value=3.7e-05  Score=55.23  Aligned_cols=23  Identities=30%  Similarity=0.706  Sum_probs=21.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|+||||+||||+++.+++.+
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l   70 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREI   70 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999874

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.63  E-value=2.4e-05  Score=53.38  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...++..|.|.|+.||||||+++.|+...
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~~   44 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKYK   44 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhcc
Confidence            34567789999999999999999998763

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.62  E-value=3.6e-05  Score=60.79  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDM   51 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l   51 (119)
                      .++|+|+||+|||++|+.+++.++..+  +++.++
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~  524 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY  524 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence            699999999999999999999887443  455444

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.62  E-value=4.1e-05  Score=54.82  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..|+|+|++||||||++..||..+
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l  128 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMF  128 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence            456788999999999999999999754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.61  E-value=4.4e-05  Score=50.42  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=21.9

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+..+|+|+|.+|+||||+...+...
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            44556789999999999999999999753

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.60  E-value=4.5e-05  Score=54.48  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..+.|+|+.||||||+++.|+..+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.60  E-value=3.6e-05  Score=51.37  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=22.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.+|+||||+..++..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHh
Confidence            3457999999999999999999875

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.60  E-value=4.3e-05  Score=58.15  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=22.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..++|.|+||+|||++|+.+++..+
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            4699999999999999999998763

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.59  E-value=3.9e-05  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|+||+|+||||+++.++..+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l   60 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESI   60 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            49999999999999999999853

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.58  E-value=4.2e-05  Score=51.85  Aligned_cols=25  Identities=24%  Similarity=0.248  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+|||||||++..++..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4568899999999999999999873

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.58  E-value=6.9e-05  Score=56.10  Aligned_cols=28  Identities=36%  Similarity=0.382  Sum_probs=23.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+..|+++|++||||||++..||..+
T Consensus        94 ~~~~~vI~lvG~~GsGKTTt~~kLA~~l  121 (433)
T 3kl4_A           94 TKLPFIIMLVGVQGSGKTTTAGKLAYFY  121 (433)
T ss_dssp             CSSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3457889999999999999999998643

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.57  E-value=5.7e-05  Score=53.23  Aligned_cols=23  Identities=39%  Similarity=0.713  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|.|+||+||||+++.+++.+
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            59999999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.57  E-value=4.4e-05  Score=52.63  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568899999999999999999864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.57  E-value=6e-05  Score=49.74  Aligned_cols=24  Identities=17%  Similarity=-0.006  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...++|+|++||||||+++.|...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            457899999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.57  E-value=2.4e-05  Score=51.27  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+||||+...|...
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcC
Confidence            4579999999999999999999864

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.56  E-value=7.2e-05  Score=52.68  Aligned_cols=24  Identities=29%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..++|.||||+|||++|.+||..+
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhh
Confidence            469999999999999999999864

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.56  E-value=6e-05  Score=53.43  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=28.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      ..++|+|++|+|||++++.+++..++.+++...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~   64 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE   64 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence            578999999999999999999988877776644

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.56  E-value=6.4e-05  Score=54.02  Aligned_cols=26  Identities=31%  Similarity=0.362  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..++|+|++|+||||+++.+++.++.
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            35899999999999999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.56  E-value=3.4e-05  Score=52.72  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+--
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3567899999999999999999853

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.56  E-value=6.3e-05  Score=59.53  Aligned_cols=35  Identities=26%  Similarity=0.485  Sum_probs=28.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLR   53 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~   53 (119)
                      .++|+||||+|||++|+.+++.+     .+..+++.++..
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~  562 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME  562 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence            69999999999999999999875     355566665543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.55  E-value=9.1e-05  Score=55.62  Aligned_cols=27  Identities=26%  Similarity=0.425  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++..|+++|++||||||++..||..+
T Consensus        98 ~~p~vIlivG~~G~GKTTt~~kLA~~l  124 (443)
T 3dm5_A           98 EKPTILLMVGIQGSGKTTTVAKLARYF  124 (443)
T ss_dssp             SSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHHHH
Confidence            457899999999999999999998643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.55  E-value=5.6e-05  Score=53.20  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..++|+|+|||||||+++.|+..
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4568899999999999999998864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.54  E-value=5.8e-05  Score=47.89  Aligned_cols=26  Identities=15%  Similarity=0.378  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+||||||+...|...
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcC
Confidence            35678999999999999999999863

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.54  E-value=5e-05  Score=53.10  Aligned_cols=25  Identities=28%  Similarity=0.310  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999854

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.53  E-value=5.1e-05  Score=52.40  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568899999999999999999864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.53  E-value=5e-05  Score=55.24  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=23.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..++.|+|++||||||+++.|+..+..
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            568999999999999999999987643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.52  E-value=4.3e-05  Score=53.94  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+||.||||||+.+.|+--
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4568899999999999999999853

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.52  E-value=6.5e-05  Score=52.74  Aligned_cols=23  Identities=35%  Similarity=0.697  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|+|+||+|||++++.+++.+
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHHHh
Confidence            49999999999999999999874

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.52  E-value=6.7e-05  Score=51.87  Aligned_cols=23  Identities=39%  Similarity=0.572  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.|+|+.||||||+.+.|+.-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999853

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.51  E-value=5.8e-05  Score=52.90  Aligned_cols=25  Identities=32%  Similarity=0.502  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            4568899999999999999999864

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.51  E-value=7.8e-05  Score=50.22  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..++++|+||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3568899999999999999886433

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.51  E-value=7.4e-05  Score=52.37  Aligned_cols=25  Identities=36%  Similarity=0.612  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999863

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.51  E-value=6e-05  Score=53.00  Aligned_cols=25  Identities=44%  Similarity=0.652  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4467899999999999999999864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.51  E-value=7.2e-05  Score=54.73  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..+.|+|+.||||||+++.|+..+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            456789999999999999999999754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.50  E-value=4.7e-05  Score=53.42  Aligned_cols=25  Identities=32%  Similarity=0.565  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4568899999999999999999853

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.50  E-value=7.9e-05  Score=49.40  Aligned_cols=25  Identities=36%  Similarity=0.513  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..++++|++||||||++..++.++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999997777653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.50  E-value=6.3e-05  Score=52.57  Aligned_cols=25  Identities=40%  Similarity=0.591  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4568999999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.50  E-value=6.4e-05  Score=52.18  Aligned_cols=24  Identities=38%  Similarity=0.638  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+|+.||||||+.+.|+.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456789999999999999999996

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.50  E-value=6e-05  Score=51.06  Aligned_cols=23  Identities=39%  Similarity=0.335  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+.|+|+.||||||+.+.|+.
T Consensus        22 Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           22 NTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             CSEEEEECCTTSSTTHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            45789999999999999999985

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.49  E-value=2.9e-05  Score=51.15  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+.|+|++||||||+++.|+..+
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~   26 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPIL   26 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            478999999999999999998765

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.49  E-value=5.1e-05  Score=52.62  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568899999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.49  E-value=6.5e-05  Score=50.20  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...+...
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence            44579999999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.48  E-value=5.3e-05  Score=52.77  Aligned_cols=25  Identities=32%  Similarity=0.549  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999853

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.48  E-value=8.2e-05  Score=50.43  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=26.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTG   49 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~   49 (119)
                      .+..++|.|+|||||||+|..++..     .++.+++.+
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            4567899999999999999888753     256666654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.48  E-value=6.8e-05  Score=52.33  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcC
Confidence            4568899999999999999999853

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.48  E-value=8.2e-05  Score=52.31  Aligned_cols=23  Identities=35%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|.|++|+|||++++.+++.+
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            49999999999999999999875

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.48  E-value=5.6e-05  Score=52.17  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999999864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.47  E-value=0.00012  Score=46.93  Aligned_cols=26  Identities=15%  Similarity=0.114  Sum_probs=23.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+..+|+|+|.+|+||||+...+..
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            45678999999999999999999975

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.47  E-value=9.5e-05  Score=47.43  Aligned_cols=26  Identities=23%  Similarity=0.357  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            45679999999999999999999764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.46  E-value=5.2e-05  Score=51.60  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3557899999999999999999864

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.46  E-value=7.4e-05  Score=52.33  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4568899999999999999999853

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.45  E-value=5.5e-05  Score=60.71  Aligned_cols=25  Identities=32%  Similarity=0.541  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...++|+|+||+|||++++.+++..
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l  215 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRI  215 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHH
Confidence            3468999999999999999999876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.45  E-value=8.3e-05  Score=48.98  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|++||||||+.+.++..
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.45  E-value=6.3e-05  Score=51.55  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.45  E-value=9.3e-05  Score=48.87  Aligned_cols=24  Identities=25%  Similarity=0.495  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|++||||||+.+.|+..
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            468999999999999999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.44  E-value=9.6e-05  Score=54.15  Aligned_cols=27  Identities=26%  Similarity=0.302  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .....++|+|++||||||+.+.|+..+
T Consensus       134 ~~g~~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          134 RKMGLILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            345689999999999999999998754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.43  E-value=0.0001  Score=49.00  Aligned_cols=32  Identities=9%  Similarity=0.153  Sum_probs=25.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      ..-++|+|++|+||||+|..|.++ |...++-|
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD   47 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR-GHQLVCDD   47 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCC
Confidence            456899999999999999999874 66666544

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.43  E-value=9.4e-05  Score=51.71  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+.|+|++||||||++..++.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999885

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.43  E-value=0.0001  Score=56.07  Aligned_cols=27  Identities=22%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..|.|+|++||||||+++.|+..+
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            456789999999999999999999753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.42  E-value=0.0001  Score=46.52  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.+|+||||+...+...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999999999998753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.42  E-value=0.00011  Score=46.34  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++|+|+|.+|+||||+...+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999999864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.42  E-value=0.0001  Score=47.04  Aligned_cols=25  Identities=48%  Similarity=0.701  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+||||+..+|...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcC
Confidence            4578999999999999999999753

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.42  E-value=7.3e-05  Score=52.00  Aligned_cols=25  Identities=36%  Similarity=0.473  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        25 ~Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           25 AGEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4567899999999999999999854

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.42  E-value=7.2e-05  Score=52.85  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4567899999999999999999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.41  E-value=0.00011  Score=47.29  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=24.5

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.....+|+|+|.+|+||||+...+...
T Consensus         5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A            5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccCCcceEEEEECcCCCCHHHHHHHHHhC
Confidence            34566789999999999999999999753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00014  Score=47.44  Aligned_cols=26  Identities=31%  Similarity=0.443  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|++||||||+...|...
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            45679999999999999999999864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.40  E-value=0.00014  Score=47.20  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+|+|+|++|+||||+...|+.
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457899999999999999999986

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.40  E-value=9e-05  Score=54.05  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ....++|+|++||||||+.+.|+..+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            34689999999999999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.40  E-value=0.00011  Score=53.79  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||+||||||+.+.|+-
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCchHHHHHHHHhc
Confidence            456789999999999999999995

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.40  E-value=0.00012  Score=48.23  Aligned_cols=28  Identities=25%  Similarity=0.453  Sum_probs=21.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+....+|+|+|.+|+||||+...+..
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHh
Confidence            4456678999999999999999999974

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.40  E-value=0.00014  Score=48.47  Aligned_cols=27  Identities=30%  Similarity=0.442  Sum_probs=23.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....+|+|+|++|+||||+...|...
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            345679999999999999999999864

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.40  E-value=9e-05  Score=52.74  Aligned_cols=24  Identities=21%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...|+|+|+||+|||++|+.+++.
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~   48 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHAC   48 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEECCCCchHHHHHHHHHHh
Confidence            346999999999999999999985

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.39  E-value=0.00016  Score=45.94  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+|+|+|.+|+||||+...+..
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            4567999999999999999999975

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.39  E-value=0.00011  Score=46.26  Aligned_cols=23  Identities=17%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+++|.+|+||||+...+...
T Consensus         4 ~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            4 YKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            58999999999999999999754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.39  E-value=0.00014  Score=46.67  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=22.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+|+|+|.+|+||||+...+...
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhC
Confidence            34578999999999999999999753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.39  E-value=0.00012  Score=47.04  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=22.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+||||||+...+...
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhC
Confidence            45679999999999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.39  E-value=0.00011  Score=47.50  Aligned_cols=25  Identities=24%  Similarity=0.549  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+||||+..+|+..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4578999999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.39  E-value=0.00012  Score=47.60  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=24.3

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .|....+|+|+|.+|+||||+..++...
T Consensus        12 ~~~~~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           12 APDQEVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHhcC
Confidence            3466789999999999999999999754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.39  E-value=0.00014  Score=46.99  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=23.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+..+|+|+|.+|+||||+...+...
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            344679999999999999999999853

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.38  E-value=0.00021  Score=54.60  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=20.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....|.|+|++|+||||+|..++.
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            356789999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.38  E-value=8.2e-05  Score=51.80  Aligned_cols=25  Identities=32%  Similarity=0.372  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999999853

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.38  E-value=0.00011  Score=48.57  Aligned_cols=27  Identities=22%  Similarity=0.198  Sum_probs=22.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+..+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            345689999999999999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.38  E-value=0.00014  Score=52.86  Aligned_cols=27  Identities=22%  Similarity=0.329  Sum_probs=23.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+|+|+|.||+||||++..|+..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.38  E-value=0.00016  Score=47.06  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+..+|...
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhC
Confidence            34679999999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.38  E-value=0.00013  Score=48.74  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+|+|+|.+||||||++..|+..+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.38  E-value=0.00014  Score=48.84  Aligned_cols=26  Identities=23%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..+|+|+|.+||||||++..++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998763

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.38  E-value=0.00013  Score=53.37  Aligned_cols=24  Identities=42%  Similarity=0.612  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||+||||||+.+.|+-
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHC
Confidence            456789999999999999999995

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.38  E-value=0.0001  Score=51.79  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+++.|+|++||||||+.+.|+...
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999998643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.37  E-value=0.00015  Score=45.79  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.+|+||||+...+...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            478999999999999999999753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=97.37  E-value=0.0001  Score=48.91  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .....+|+|+|.+|+||||+...+..
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhh
Confidence            34457999999999999999999975

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.37  E-value=0.00012  Score=46.87  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|++|+||||+..+|..
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999985

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.37  E-value=0.00013  Score=52.71  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+..+.|+|+|||||||+.+.|+.
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999985

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.37  E-value=8.7e-05  Score=47.92  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+|+|+|++|+||||+...+..
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            5678999999999999999999873

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.37  E-value=0.00014  Score=47.73  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=23.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +....+|+|+|.+||||||+...+...
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhC
Confidence            445689999999999999999999753

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.37  E-value=0.00013  Score=53.73  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||+||||||+.+.|+-
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHc
Confidence            456789999999999999999995

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.36  E-value=0.00013  Score=57.68  Aligned_cols=26  Identities=31%  Similarity=0.374  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ....++|+|+||+|||++++.+++.+
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            34678999999999999999999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.35  E-value=0.00014  Score=53.21  Aligned_cols=24  Identities=46%  Similarity=0.547  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||.||||||+.+.|+-
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCchHHHHHHHHhc
Confidence            456789999999999999999985

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.35  E-value=0.00011  Score=47.95  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|++|+||||+...++.
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999976

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.35  E-value=0.00013  Score=52.90  Aligned_cols=31  Identities=16%  Similarity=0.045  Sum_probs=25.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc--Cccccch
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY--CVCHLST   48 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~--~~~~is~   48 (119)
                      ..++|.|+||+|||++|..++...  .+.+++.
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~  156 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV  156 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence            356899999999999999998753  4557776

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.35  E-value=0.0001  Score=59.16  Aligned_cols=24  Identities=33%  Similarity=0.495  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..++|+|+||+|||++|+.|++.+
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~  612 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATL  612 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999999875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.35  E-value=0.00014  Score=47.06  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.+|+||||+...|..
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhc
Confidence            4467999999999999999999985

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00011  Score=55.30  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+++.|+..
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4678999999999999999999864

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.34  E-value=0.00015  Score=53.32  Aligned_cols=24  Identities=42%  Similarity=0.653  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||.||||||+.+.|+-
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHc
Confidence            456789999999999999999995

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.34  E-value=0.00016  Score=52.82  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .-.++|+||+||||||+.+.++..+
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3489999999999999999997653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.34  E-value=0.00014  Score=47.75  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=20.9

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+..+|+|+|.+|+||||+..++..
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhc
Confidence            445667999999999999999999986

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.34  E-value=0.00026  Score=45.90  Aligned_cols=26  Identities=12%  Similarity=0.184  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcC
Confidence            44568999999999999999999764

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.33  E-value=0.00019  Score=51.61  Aligned_cols=28  Identities=11%  Similarity=0.133  Sum_probs=24.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +..++|.|++|+|||++|+.+++.+...
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~   51 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQ   51 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence            4469999999999999999999987643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.33  E-value=0.00014  Score=46.13  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+||||+...+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            46899999999999999999974

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.33  E-value=0.00012  Score=46.87  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+|+|+|.+|+||||+...+..
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            357899999999999999999975

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.33  E-value=0.00016  Score=45.79  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+||||+...+..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999975

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=97.33  E-value=0.0002  Score=47.33  Aligned_cols=29  Identities=17%  Similarity=0.288  Sum_probs=23.2

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .-+....+|+|+|.+|+||||+...+...
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhC
Confidence            33445579999999999999999999863

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.33  E-value=0.00015  Score=45.90  Aligned_cols=23  Identities=39%  Similarity=0.686  Sum_probs=20.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+||||+..++..
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCC
T ss_pred             eEEEEEECCCCCCHHHHHHHHcC
Confidence            46899999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.32  E-value=0.00013  Score=53.30  Aligned_cols=24  Identities=50%  Similarity=0.596  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||.||||||+.+.|+-
T Consensus        40 ~Ge~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           40 EGEMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            456789999999999999999985

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.32  E-value=0.00015  Score=46.02  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+||||+...+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999999985

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.32  E-value=0.00019  Score=46.81  Aligned_cols=26  Identities=15%  Similarity=0.139  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45689999999999999999999753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.32  E-value=0.00018  Score=51.79  Aligned_cols=27  Identities=30%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..|.|+|++|+||||++..||..+
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l  129 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYY  129 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456788999999999999999998754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.31  E-value=0.00014  Score=51.03  Aligned_cols=24  Identities=42%  Similarity=0.607  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +.++.|+|+.||||||+.+.|+.-
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            568899999999999999999853

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.30  E-value=0.00018  Score=52.85  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+--
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhcC
Confidence            4567899999999999999999853

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.30  E-value=0.00014  Score=46.19  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+||||+...+...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            4578999999999999999999854

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.30  E-value=0.00014  Score=54.46  Aligned_cols=34  Identities=26%  Similarity=0.294  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG   49 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~   49 (119)
                      .+.+|+|+|++||||||++..||..+     .+.+++.|
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D  136 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD  136 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence            45689999999999999999999764     35555544

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.30  E-value=0.00016  Score=47.04  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=22.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...+...
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence            45678999999999999999999864

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.29  E-value=0.00019  Score=52.09  Aligned_cols=25  Identities=40%  Similarity=0.596  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....|.|+|+|||||||+...|...
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~   97 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKM   97 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHH
Confidence            3678999999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.29  E-value=0.00013  Score=46.70  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+|+|+|.+|+||||+...+..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            447899999999999999999974

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.29  E-value=0.00018  Score=45.74  Aligned_cols=22  Identities=36%  Similarity=0.582  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+||||+...+..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999963

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.29  E-value=0.00014  Score=46.65  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.+|+||||+...|..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhc
Confidence            4557999999999999999999864

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.29  E-value=0.00019  Score=47.14  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=23.5

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+..+|+|+|.+|+|||++...+..
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence            445678999999999999999999964

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.29  E-value=0.00014  Score=51.61  Aligned_cols=25  Identities=20%  Similarity=0.315  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+|+.||||||+.+.|+.-
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4567899999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.28  E-value=0.00015  Score=46.86  Aligned_cols=25  Identities=20%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+||||+...|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            4578999999999999999999853

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.28  E-value=0.00014  Score=52.84  Aligned_cols=26  Identities=31%  Similarity=0.244  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|++||||||++..++...
T Consensus       130 ~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          130 TQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678999999999999999998765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.28  E-value=0.0001  Score=46.71  Aligned_cols=24  Identities=29%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+|+|+|.+|+||||+..+|..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999985

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.28  E-value=0.00015  Score=53.19  Aligned_cols=24  Identities=46%  Similarity=0.673  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||.||||||+.+.|+-
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHc
Confidence            356789999999999999999985

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.28  E-value=0.00019  Score=46.24  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...|...
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhC
Confidence            34579999999999999999999853

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.28  E-value=9.3e-05  Score=53.03  Aligned_cols=26  Identities=38%  Similarity=0.659  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|+.||||||+.+.|+.-+
T Consensus        79 ~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           79 PGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHcCC
Confidence            45688999999999999999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.27  E-value=0.00018  Score=55.21  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=26.8

Q ss_pred             CCCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          11 ESHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        11 ~~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.|+++..+.|+|+.||||||+.+.|+-.
T Consensus        19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           19 LPTPKNNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             CCCCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            367888899999999999999999999864

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.27  E-value=0.00012  Score=53.41  Aligned_cols=24  Identities=38%  Similarity=0.609  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||.||||||+.+.|+-
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCccHHHHHHHHHc
Confidence            456789999999999999999995

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.27  E-value=9.1e-05  Score=49.07  Aligned_cols=25  Identities=20%  Similarity=0.438  Sum_probs=21.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|++||||||+.+.|+.
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999998864

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.27  E-value=0.00017  Score=55.85  Aligned_cols=25  Identities=28%  Similarity=0.505  Sum_probs=22.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..++|+|+||+||||+|+.|+..+.
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4799999999999999999998763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.27  E-value=0.00017  Score=46.07  Aligned_cols=26  Identities=31%  Similarity=0.378  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...|...
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcC
Confidence            34579999999999999999999854

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.26  E-value=0.00024  Score=46.82  Aligned_cols=27  Identities=37%  Similarity=0.482  Sum_probs=22.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....+|+|+|.+|+|||++..++...
T Consensus         3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            3 GMTYYRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            345679999999999999999999853

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.26  E-value=0.00019  Score=53.04  Aligned_cols=24  Identities=42%  Similarity=0.574  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||+||||||+.+.|+.
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            456889999999999999999985

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.26  E-value=0.00017  Score=48.03  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.+|+||||+...|..
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhc
Confidence            3457999999999999999999975

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.26  E-value=0.00017  Score=46.92  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+|+|+|.+|+||||+..++..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            5678999999999999999999984

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.26  E-value=0.00021  Score=45.19  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.+||||||+...+...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            368999999999999999998753

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.26  E-value=0.00027  Score=52.25  Aligned_cols=28  Identities=21%  Similarity=0.321  Sum_probs=25.1

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .....+.++.|+|+||+||||+.++|..
T Consensus        15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           15 GRPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            5566778999999999999999999987

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.26  E-value=0.00021  Score=45.28  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +..+|+|+|.+|+||||+...+...
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcC
Confidence            3478999999999999999999764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.26  E-value=0.00023  Score=46.68  Aligned_cols=27  Identities=30%  Similarity=0.448  Sum_probs=22.5

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +....+|+|+|.+|+||||+...+...
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            345689999999999999999999754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.26  E-value=0.0002  Score=47.36  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=23.6

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+..+|+|+|++|+||||+..++..
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence            456678999999999999999999974

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.26  E-value=0.00023  Score=48.76  Aligned_cols=27  Identities=19%  Similarity=0.185  Sum_probs=22.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+...++++|++||||||.+..++.++
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence            345688999999999999998888765

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.25  E-value=0.00012  Score=52.27  Aligned_cols=25  Identities=20%  Similarity=0.082  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|.|+||||||++|..++..
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3567899999999999999999864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.25  E-value=0.00023  Score=53.03  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..-.++|+||+||||||+.+.++..+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l  191 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQEL  191 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence            44578999999999999999998765

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=97.25  E-value=0.00011  Score=53.30  Aligned_cols=28  Identities=32%  Similarity=0.229  Sum_probs=24.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ++..|.|-|+-||||||+++.|++.++.
T Consensus         6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~   33 (334)
T 1p6x_A            6 TIVRIYLDGVYGIGKSTTGRVMASAASG   33 (334)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4578899999999999999999998753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.25  E-value=0.00022  Score=46.26  Aligned_cols=26  Identities=23%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+|+|+|.+|+||||+...+...
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            56789999999999999999999753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.25  E-value=0.00026  Score=45.51  Aligned_cols=26  Identities=15%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...+...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34679999999999999999999753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.25  E-value=0.00021  Score=46.38  Aligned_cols=28  Identities=25%  Similarity=0.250  Sum_probs=23.4

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ....+|+|+|.+|+||||+.+.+...+.
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3457999999999999999988876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.24  E-value=0.00021  Score=46.52  Aligned_cols=27  Identities=26%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....+|+|+|.+|+||||+..+|...
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcC
Confidence            345679999999999999999999863

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.24  E-value=0.00016  Score=47.36  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+|+|+|.+|+||||+...|...
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcC
Confidence            44679999999999999999999753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.24  E-value=0.00019  Score=48.88  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=22.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....++|+|+|.+|+||||+...|...
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCC
Confidence            345679999999999999999999853

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.23  E-value=0.00027  Score=44.69  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+|||++...+...
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            37999999999999999999753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.23  E-value=0.00019  Score=46.16  Aligned_cols=26  Identities=35%  Similarity=0.528  Sum_probs=22.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...+...
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcC
Confidence            44578999999999999999999753

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.23  E-value=0.00022  Score=52.10  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=26.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~   50 (119)
                      ++..+.|.|+|||||||+|..++...     .+.+++..+
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            34578999999999999999998653     245666544

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.22  E-value=0.00017  Score=47.67  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+|+|+|.+|+||||+...|..
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHh
Confidence            357999999999999999999974

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.21  E-value=0.00015  Score=52.29  Aligned_cols=25  Identities=36%  Similarity=0.408  Sum_probs=22.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+.|+|++||||||+.+.|+..+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.20  E-value=0.00019  Score=46.40  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+||||||+...+...
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcC
Confidence            4579999999999999999999753

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.20  E-value=0.00025  Score=54.06  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=22.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++.+|+|+|++||||||++..|+..+
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999643

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=97.19  E-value=9.5e-05  Score=57.32  Aligned_cols=27  Identities=15%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ...++|+|+||+|||++|+.+++..+.
T Consensus       327 ~~~vLL~GppGtGKT~LAr~la~~~~r  353 (595)
T 3f9v_A          327 DIHILIIGDPGTAKSQMLQFISRVAPR  353 (595)
T ss_dssp             SCCEEEEESSCCTHHHHHHSSSTTCSC
T ss_pred             CcceEEECCCchHHHHHHHHHHHhCCC
Confidence            347999999999999999999987653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.19  E-value=0.00025  Score=46.66  Aligned_cols=26  Identities=27%  Similarity=0.459  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...|...
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcC
Confidence            45679999999999999999999754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.19  E-value=0.00015  Score=48.20  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+||||+...|...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            3468999999999999999999863

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.19  E-value=0.00032  Score=48.12  Aligned_cols=26  Identities=27%  Similarity=0.451  Sum_probs=22.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+...++++|.+|+||||++..|+..
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~   37 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRY   37 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence            34567889999999999999999854

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.19  E-value=0.00036  Score=47.08  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....+|+|+|.+|+||||+...|...
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            356789999999999999999999753

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.18  E-value=0.00012  Score=53.35  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||.||||||+.+.|+-
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            456789999999999999999995

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.18  E-value=0.00034  Score=45.65  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+|+|+|.+|+||||+...|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            457999999999999999999975

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.17  E-value=0.00024  Score=45.97  Aligned_cols=23  Identities=26%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+||||+...+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            57999999999999999999863

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=97.16  E-value=0.00028  Score=51.58  Aligned_cols=27  Identities=30%  Similarity=0.233  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..+|+|+|.+||||||+++.+.--|
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~i~~   57 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMRIIH   57 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHHHHh
Confidence            567899999999999999999985433

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.16  E-value=0.00026  Score=47.28  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=22.5

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +.+..+|+|+|.+|+||||+...+..
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHc
Confidence            44568999999999999999999975

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.15  E-value=0.0004  Score=47.79  Aligned_cols=34  Identities=21%  Similarity=0.093  Sum_probs=25.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG   49 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~   49 (119)
                      ...+|++.|+||+||||++..+|..+   |  +.+++++
T Consensus         5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D   43 (228)
T 2r8r_A            5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE   43 (228)
T ss_dssp             CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            34689999999999999988887653   3  4444554

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.15  E-value=0.00023  Score=54.29  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..++|+|++||||||+.+.|+...
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34579999999999999999998653

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.14  E-value=0.00031  Score=47.53  Aligned_cols=24  Identities=38%  Similarity=0.551  Sum_probs=20.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..++|.|+||+|||++|..++.
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            345789999999999999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.14  E-value=0.0002  Score=46.20  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+|+|+|.+|+||||+...+..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            457899999999999999999984

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.14  E-value=0.00033  Score=46.49  Aligned_cols=26  Identities=19%  Similarity=0.129  Sum_probs=21.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+|+|+|.+|+||||+..++...
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999853

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.14  E-value=0.00029  Score=52.21  Aligned_cols=23  Identities=30%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFA   38 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la   38 (119)
                      ....+.|+|+|||||||++..|+
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            45678999999999999999776

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.14  E-value=0.00027  Score=46.24  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=23.1

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+..+|+|+|.+|+||||+...+...
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcC
Confidence            33455689999999999999999999864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.13  E-value=0.00042  Score=49.16  Aligned_cols=29  Identities=34%  Similarity=0.323  Sum_probs=24.1

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+. .+..+.|+|++|+||||++..||..+
T Consensus        94 ~~~-~~~~i~i~g~~G~GKTT~~~~la~~~  122 (295)
T 1ls1_A           94 VLK-DRNLWFLVGLQGSGKTTTAAKLALYY  122 (295)
T ss_dssp             CCC-SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             ecC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            444 67788899999999999999998653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.13  E-value=0.00032  Score=50.97  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=27.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~   50 (119)
                      ++..+.|.|+|||||||+|..++...     .+.+++...
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            45678999999999999999998542     466676653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.13  E-value=0.00022  Score=47.09  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.+|+||||+..++..
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~   45 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGG   45 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHh
Confidence            3457999999999999999999863

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.13  E-value=0.00035  Score=44.98  Aligned_cols=24  Identities=13%  Similarity=0.306  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+|+|+|.+|+||||+...+..
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHc
Confidence            346899999999999999999975

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.13  E-value=0.00031  Score=48.92  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|+|||||||+..+|...
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999853

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.13  E-value=0.00036  Score=49.65  Aligned_cols=26  Identities=35%  Similarity=0.404  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..++++|++|+||||++..||..+
T Consensus        97 ~~~vi~i~G~~G~GKTT~~~~la~~~  122 (297)
T 1j8m_F           97 IPYVIMLVGVQGTGKTTTAGKLAYFY  122 (297)
T ss_dssp             SSEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36788899999999999999998654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.12  E-value=0.00035  Score=50.46  Aligned_cols=26  Identities=27%  Similarity=0.385  Sum_probs=22.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+|.|+|+||+||||++..|+..
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~   79 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGML   79 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999854

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.11  E-value=0.00037  Score=50.38  Aligned_cols=25  Identities=12%  Similarity=0.049  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|.|+||||||++|..++..
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999875

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.10  E-value=0.00039  Score=45.91  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=21.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .....+|+|+|.+|+||||+...|..
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHh
Confidence            34568999999999999999999974

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.09  E-value=0.00034  Score=45.53  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+|+|+.||||||+.++|+--+
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999997644

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.09  E-value=0.00037  Score=49.35  Aligned_cols=32  Identities=16%  Similarity=0.124  Sum_probs=25.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC--ccccchh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC--VCHLSTG   49 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~--~~~is~~   49 (119)
                      ..++|+|++|+|||++++.+++..+  ..+++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence            4789999999999999999998753  3455543

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=97.09  E-value=0.00027  Score=45.96  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+|+|+|.+|+||||+..++..
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHc
Confidence            5678999999999999999999853

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.09  E-value=0.00027  Score=51.31  Aligned_cols=26  Identities=38%  Similarity=0.510  Sum_probs=22.0

Q ss_pred             CCceEEE--EcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAIL--LGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i--~G~pGsGKstla~~la~~~   41 (119)
                      .+..++|  +|++|+|||++++.+++..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3456788  9999999999999998764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.08  E-value=0.00036  Score=47.99  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=22.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....+|+|+|.+|+||||+...|...
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCC
Confidence            345689999999999999999999753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.08  E-value=0.00039  Score=45.72  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+||||+...|...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3578999999999999999999753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.08  E-value=0.00025  Score=45.52  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +..+|+|+|.+|+|||++..++...
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3578999999999999999999863

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.07  E-value=0.00041  Score=45.99  Aligned_cols=26  Identities=12%  Similarity=0.309  Sum_probs=21.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+..+|+|+|.+|+||||+...+..
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence            34567999999999999999999875

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.06  E-value=0.00046  Score=51.62  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++.+|+|+|++|+||||++..||..+
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l  124 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFL  124 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            446788899999999999999998543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.05  E-value=0.00045  Score=44.82  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +..+|+|+|.+|+||||+..+|...
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcC
Confidence            4579999999999999999999753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00054  Score=53.29  Aligned_cols=28  Identities=32%  Similarity=0.390  Sum_probs=24.9

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+..+.|+||.||||||+.+.|+-.
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence            5667889999999999999999999854

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.02  E-value=0.00042  Score=49.61  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|.|+||||||++|..++..
T Consensus       106 ~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          106 TRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHhHHHHHHHHH
Confidence            3567899999999999999999865

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.02  E-value=0.00036  Score=48.51  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=22.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+|+|+|.||+||||+..+|..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHC
Confidence            4457899999999999999999985

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=97.01  E-value=0.00051  Score=49.35  Aligned_cols=28  Identities=14%  Similarity=0.151  Sum_probs=22.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+..+|+|+|.+|+||||+...|..
T Consensus       160 ~~~~~~~kI~ivG~~~vGKSsLl~~l~~  187 (329)
T 3o47_A          160 LFGKKEMRILMVGLDAAGKTTILYKLKL  187 (329)
T ss_dssp             ---CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred             ccccCcceEEEECCCCccHHHHHHHHhC
Confidence            4455667999999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.01  E-value=0.00049  Score=52.71  Aligned_cols=26  Identities=31%  Similarity=0.606  Sum_probs=23.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.++.|+|+.||||||+.+.|+-.
T Consensus        45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           45 KEGMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            56778999999999999999999854

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.01  E-value=0.00054  Score=49.98  Aligned_cols=34  Identities=21%  Similarity=0.231  Sum_probs=27.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTG   49 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~   49 (119)
                      +...++|.|+|||||||+|..++..     ..+.+++..
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E  100 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE  100 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4567899999999999999999864     246677773

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.00  E-value=0.00048  Score=45.43  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+|+|+|.+|+||||+...|..
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhc
Confidence            457999999999999999999975

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=97.00  E-value=0.0003  Score=51.76  Aligned_cols=28  Identities=29%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .....|.|-|+-||||||+++.|++.+.
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~   74 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGS   74 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3456788999999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.00  E-value=0.00051  Score=50.23  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..+.|+|++||||||+.+.|+...
T Consensus       215 G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          215 GRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CCEEEEECCCCccHHHHHHHHhccc
Confidence            4578999999999999999998543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.99  E-value=0.00057  Score=45.71  Aligned_cols=28  Identities=21%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ......+|+|+|.+|+|||++...+...
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcC
Confidence            3345689999999999999999999753

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.98  E-value=0.00045  Score=51.62  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.|+|++||||||+.+.|+..
T Consensus        44 ~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           44 NILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3999999999999999999853

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.98  E-value=0.00049  Score=51.46  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|.|+|||||||++..++..+
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            78999999999999999988764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.97  E-value=0.00052  Score=52.91  Aligned_cols=26  Identities=46%  Similarity=0.724  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|+.||||||+.+.|+.-+
T Consensus       368 ~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          368 QGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34688999999999999999998654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.97  E-value=0.00062  Score=48.62  Aligned_cols=33  Identities=24%  Similarity=0.115  Sum_probs=25.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~   48 (119)
                      ++..++|.|+||+||||+|..++...     .+.++|+
T Consensus        67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl  104 (315)
T 3bh0_A           67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL  104 (315)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence            45679999999999999999998642     3555654

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.96  E-value=0.00058  Score=50.02  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=27.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~   50 (119)
                      .+..++|.|+|||||||+|..++..     ..+.+++++.
T Consensus        73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            3457888999999999999998864     2466777654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.95  E-value=0.00046  Score=53.20  Aligned_cols=26  Identities=42%  Similarity=0.672  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..+.|+|+.||||||+.+.|+.-+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            34688999999999999999998654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.95  E-value=0.00043  Score=49.49  Aligned_cols=24  Identities=25%  Similarity=0.212  Sum_probs=21.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...++|+|+.||||||+.+.|...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            457899999999999999999853

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.93  E-value=0.00081  Score=44.92  Aligned_cols=27  Identities=22%  Similarity=0.306  Sum_probs=23.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++..++++|++||||||.+-.++.++
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            345688999999999999999988875

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.93  E-value=0.00066  Score=48.27  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+.|+|++||||||+.+.|+ ..
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            3578999999999999999998 54

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=96.93  E-value=0.00031  Score=50.91  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ...|.|-|+-||||||+++.|++.++
T Consensus         4 ~~fI~~EG~dGsGKTT~~~~La~~L~   29 (331)
T 1e2k_A            4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (331)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45788999999999999999998764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.93  E-value=0.00032  Score=45.26  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=11.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+|+|+|.+|+||||+...+..
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEEECCCCC-----------
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            357899999999999999999874

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.92  E-value=0.00068  Score=44.88  Aligned_cols=25  Identities=12%  Similarity=0.205  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+||||+...+...
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4578999999999999999999853

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.91  E-value=0.00051  Score=52.29  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLF   37 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~l   37 (119)
                      .+..+.|+|++||||||+++.+
T Consensus        38 ~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           38 IGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHH
Confidence            4568999999999999999994

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.91  E-value=0.00067  Score=52.37  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...++|+|+||+||||++..++..
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~  227 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADL  227 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999998864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.91  E-value=0.00061  Score=50.70  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+.|+|++||||||+.+.|+.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhC
Confidence            34789999999999999999986

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.90  E-value=0.00067  Score=49.30  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=23.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++.++.|+|++|+||||+.+.|+...
T Consensus        70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           70 IGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45689999999999999999999865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.90  E-value=0.00087  Score=50.06  Aligned_cols=26  Identities=38%  Similarity=0.382  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..|.|+|++||||||++..||..+
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l  122 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYY  122 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56788899999999999999999754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.90  E-value=0.00056  Score=48.68  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=22.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +.|..+-.|.|+|.||+||||+..+|..
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            3444556899999999999999999975

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.89  E-value=0.00072  Score=50.63  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=23.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++.++.|+|++||||||+.+.|+...
T Consensus       156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          156 RGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            45689999999999999999999865

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.88  E-value=0.0007  Score=44.13  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|+|+|.+|+|||++...+...
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            4579999999999999999999854

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.88  E-value=0.00011  Score=48.25  Aligned_cols=26  Identities=19%  Similarity=0.382  Sum_probs=7.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...|...
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEEEC-----------------
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhC
Confidence            34579999999999999999988754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.00066  Score=45.53  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.+|+||||+...|..
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhc
Confidence            4457999999999999999999975

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.87  E-value=0.00083  Score=50.23  Aligned_cols=33  Identities=24%  Similarity=0.155  Sum_probs=25.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH----cC--ccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK----YC--VCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~----~~--~~~is~   48 (119)
                      ++..++|.|+||+||||++..++..    .|  +.+++.
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~  240 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL  240 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence            4568899999999999999998764    23  556654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.87  E-value=0.00057  Score=48.57  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=20.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|++|+||||+.+.|+.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999999864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.86  E-value=0.00051  Score=53.17  Aligned_cols=26  Identities=42%  Similarity=0.708  Sum_probs=22.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..+.|+|+.||||||+.+.|+.-+
T Consensus       380 ~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          380 PGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             TTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            45689999999999999999998654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.86  E-value=0.00075  Score=48.54  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=25.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      ..-++|+|++|+||||+|..|.++ |...++-|
T Consensus       144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD  175 (314)
T 1ko7_A          144 GVGVLITGDSGIGKSETALELIKR-GHRLVADD  175 (314)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESS
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCC
Confidence            457999999999999999999774 55555433

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.85  E-value=0.00061  Score=48.35  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...+.|+|++||||||+.+.|+.
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCcHHHHHHHhcc
Confidence            35788999999999999999974

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.85  E-value=0.00078  Score=44.98  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=22.0

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLF   37 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~l   37 (119)
                      ..+....+|+|+|.+||||||+...+
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~   35 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRH   35 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTB
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHH
Confidence            34556689999999999999999983

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.84  E-value=0.003  Score=51.59  Aligned_cols=26  Identities=19%  Similarity=0.192  Sum_probs=21.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....|.|+|+.|+||||+|+.++..
T Consensus       145 ~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          145 GEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            34567889999999999999988764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.82  E-value=0.00042  Score=46.19  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|+|.+|+||||+...|...
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            34678999999999999999999764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.82  E-value=0.00078  Score=51.27  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++..+.|+|++||||||+++.++..
T Consensus       280 ~G~i~~i~G~~GsGKSTLl~~l~g~  304 (525)
T 1tf7_A          280 KDSIILATGATGTGKTLLVSRFVEN  304 (525)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999854

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.81  E-value=0.00026  Score=47.18  Aligned_cols=26  Identities=23%  Similarity=0.229  Sum_probs=21.5

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .....+|+|+|.+|+||||+..+|..
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~   33 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLD   33 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhc
Confidence            44568999999999999999998873

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.81  E-value=0.00071  Score=48.02  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +..+|.|+|+||+||||+..+|...
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4457999999999999999999853

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.79  E-value=0.00077  Score=51.64  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4568899999999999999999863

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.79  E-value=0.00093  Score=46.85  Aligned_cols=24  Identities=29%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.||+||||+..+|...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            468999999999999999999863

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=95.82  E-value=0.00021  Score=47.23  Aligned_cols=27  Identities=11%  Similarity=0.297  Sum_probs=22.8

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+..+|+|+|.+|+||||+...+..
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            345678999999999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.77  E-value=0.00065  Score=52.09  Aligned_cols=25  Identities=36%  Similarity=0.488  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus       293 ~Gei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          293 EGEIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567899999999999999999853

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=96.77  E-value=0.0011  Score=44.89  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      |-+..+|+|+|.+|+|||++..++..
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHh
Confidence            44557999999999999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=96.77  E-value=0.0014  Score=45.17  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=24.0

Q ss_pred             CCCCCCceEEEEcCC---------CCCHHHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPP---------GSGKGTQAPLFAK   39 (119)
Q Consensus        12 ~~p~~~~~i~i~G~p---------GsGKstla~~la~   39 (119)
                      .......+|+|+|.+         |+|||++..++..
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~   50 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVR   50 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHh
Confidence            334556899999999         9999999999986

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.76  E-value=0.00091  Score=46.41  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++|+|+|.|||||||+...|...
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            47999999999999999999754

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.76  E-value=0.00043  Score=53.33  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..+.|+||.||||||+.+.|+..+
T Consensus       366 ~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          366 KGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45688999999999999999998654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.75  E-value=0.0011  Score=49.36  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+|.|+|+||+||||+...|...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC
Confidence            4579999999999999999999754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.74  E-value=0.0011  Score=44.74  Aligned_cols=25  Identities=40%  Similarity=0.585  Sum_probs=21.8

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.+|+|||++..++..
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHh
Confidence            3457899999999999999999974

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.74  E-value=0.0012  Score=48.98  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .......+|.|+|.||+||||+..+|...
T Consensus        17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            56667789999999999999999999854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.73  E-value=0.00089  Score=52.07  Aligned_cols=27  Identities=30%  Similarity=0.543  Sum_probs=23.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+.++.|+|+.||||||+.+.|+-.
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCC
Confidence            356789999999999999999999853

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.72  E-value=0.0011  Score=48.46  Aligned_cols=25  Identities=32%  Similarity=0.501  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+++|+|++||||||+++.+...
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~   58 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLR   58 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999998764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.72  E-value=0.0011  Score=50.29  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+.|+|+.||||||+.+.|+.-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            67899999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.72  E-value=0.00093  Score=51.97  Aligned_cols=25  Identities=32%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus       381 ~Gei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          381 KGEVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4568899999999999999999863

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.71  E-value=0.00085  Score=49.97  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=22.5

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....+.|+|+|++||||||+.+.|+..
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCC
Confidence            3344567899999999999999999853

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.70  E-value=0.00061  Score=52.63  Aligned_cols=26  Identities=35%  Similarity=0.482  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+.|+|+.||||||+.+.|+.-+
T Consensus       368 ~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          368 PGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            34688999999999999999998654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.69  E-value=0.0011  Score=47.68  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      +.-++|+|++|+||||+|..|.+ .|...++-|
T Consensus       147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD  178 (312)
T 1knx_A          147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGDD  178 (312)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCC
Confidence            45689999999999999999876 455555543

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=96.68  E-value=0.00066  Score=49.35  Aligned_cols=29  Identities=24%  Similarity=0.171  Sum_probs=25.0

Q ss_pred             CCCCceEEEEcCCCCCHHHHH-HHHHhHcC
Q psy9244          14 ESTGVNAILLGPPGSGKGTQA-PLFAKKYC   42 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla-~~la~~~~   42 (119)
                      +.++..|+|-|+-||||||++ +.|++.++
T Consensus         9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~   38 (341)
T 1osn_A            9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAI   38 (341)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             cCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            344678999999999999999 99998775

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.66  E-value=0.0013  Score=46.00  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.|||||||+..+|...
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.66  E-value=0.0011  Score=47.02  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +...|+|+|.||+||||+..+|...
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4457999999999999999999753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.65  E-value=0.0015  Score=48.77  Aligned_cols=33  Identities=27%  Similarity=0.218  Sum_probs=25.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc----C--ccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY----C--VCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~----~--~~~is~   48 (119)
                      ++..++|.|+||+|||++|..++...    |  +.++|+
T Consensus       199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl  237 (444)
T 2q6t_A          199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL  237 (444)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence            45678999999999999999988642    2  556655

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=96.64  E-value=0.0022  Score=53.08  Aligned_cols=23  Identities=30%  Similarity=0.203  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...|.|+|+.|+||||+|+.++.
T Consensus       150 ~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          150 AKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             SCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCccHHHHHHHHHH
Confidence            45789999999999999999875

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.64  E-value=0.00072  Score=58.70  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=30.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDML   52 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~   52 (119)
                      .++..++|.||||+||||+|..++..     ..+.++++.+.+
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence            45678999999999999999999764     346688877543

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.63  E-value=0.0013  Score=47.60  Aligned_cols=32  Identities=22%  Similarity=0.138  Sum_probs=23.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc-----C--ccccchhH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY-----C--VCHLSTGD   50 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~-----~--~~~is~~~   50 (119)
                      ++.|.|+|||||||+|..++...     +  +.+++..+
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~   68 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF   68 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            68999999999999988876432     2  45666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1zina1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	1e-28
d1e4va1	179	c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Esc	1e-27
d1s3ga1	182	c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac	2e-27
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	4e-26
d2cdna1	181	c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium	5e-26
d1zaka1	189	c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai	6e-22
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	2e-21
d1akya1	180	c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak	6e-21
d2ak3a1	189	c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow	9e-21
d1teva_	194	c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)	1e-20
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	1e-18
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	8e-18
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	3e-13
d1q3ta_	223	c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae	9e-13
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	1e-10
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	4e-10
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	5e-10
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	9e-10
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	2e-09
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	4e-09
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	8e-07
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	3e-05
d1deka_	241	c.37.1.1 (A:) Deoxynucleoside monophosphate kinase	4e-04
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	7e-04
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	8e-04
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.002
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	0.003
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	0.003

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  100 bits (250), Expect = 1e-28
 Identities = 50/101 (49%), Positives = 68/101 (67%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N +L+G PG+GKGTQA      Y + H+STGDM RA +  G+ LG + K+ MD G LV D
Sbjct: 2   NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           E+ + ++   L K +CQNGFLLDGFPRTV QAE + +++  
Sbjct: 62  EVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLAD 102

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

 Score = 97.7 bits (242), Expect = 1e-27
 Identities = 56/101 (55%), Positives = 73/101 (72%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
             ILLG P +GKGTQA    +KY +  +STGDMLRA V SGS LGK+ K+ MDAGKLV+D
Sbjct: 2   RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           ELV+ L+   + + +C+NGFLLDGFPRT+PQA+ +    + 
Sbjct: 62  ELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN 102

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

 Score = 97.6 bits (242), Expect = 2e-27
 Identities = 53/101 (52%), Positives = 67/101 (66%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N +L+G PG+GKGTQA    +KY   H+STGDM RA +  G+ LG K K  MD G LV D
Sbjct: 2   NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPD 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           E+ + ++   L K +C NGFLLDGFPRTVPQAE +  L+  
Sbjct: 62  EVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLAD 102

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 94.2 bits (233), Expect = 4e-26
 Identities = 76/103 (73%), Positives = 87/103 (84%)

Query: 17  GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLV 76
           GV A+LLGPPG+GKGTQAP  AK +CVCHL+TGDMLRA V+SGS LGKKLK TMDAGKLV
Sbjct: 3   GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLV 62

Query: 77  SDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           SDE+V++LI  NL+ P C+NGFLLDGFPRTV QAE +  LM K
Sbjct: 63  SDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK 105

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 93.8 bits (232), Expect = 5e-26
 Identities = 42/101 (41%), Positives = 68/101 (67%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
             +LLGPPG+GKGTQA   A+K  +  +STG++ R  +  G+ LG + K  +DAG LV  
Sbjct: 2   RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           +L  +L+ + L+ P+  NGF+LDG+PR+V QA+ ++ ++ +
Sbjct: 62  DLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLER 102

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 83.4 bits (205), Expect = 6e-22
 Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)

Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +  ++ G P SGKGTQ  L   KY + H+S GD+LRAE+++GS  GK+ KE M+ G+LV 
Sbjct: 4   LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 63

Query: 78  DEL-VVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           DE+ V  +          +NG+LLDG+PR+  QA  + +L ++
Sbjct: 64  DEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIR 106

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 81.9 bits (201), Expect = 2e-21
 Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
            ++G PGSGKGTQ     +KY   HLSTGD+LRAEVSSGS  GK L E M+ G+LV  E 
Sbjct: 12  FVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLET 71

Query: 81  VVDLISNNLDK-PECQNGFLLDGFPRTVPQAEKVYSLM 117
           V+D++ + +    +   GFL+DG+PR V Q E+    +
Sbjct: 72  VLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKI 109

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.8 bits (198), Expect = 6e-21
 Identities = 51/103 (49%), Positives = 79/103 (76%), Gaps = 1/103 (0%)

Query: 18  VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVS 77
           +  +L+GPPG+GKGTQAP   +++   HL+TGDMLR++++ G+ LG + K+ MD G LVS
Sbjct: 3   IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVS 62

Query: 78  DELVVDLISNNLDK-PECQNGFLLDGFPRTVPQAEKVYSLMMK 119
           D+++V++I + L   P C+NGF+LDGFPRT+PQAEK+  ++ +
Sbjct: 63  DDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKE 105

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

 Score = 80.3 bits (197), Expect = 9e-21
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 1/104 (0%)

Query: 15  STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGK 74
           +  + A ++G PGSGKGT +    K + + HLS+GD+LR  +  G+ +G   K  +D GK
Sbjct: 4   ARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGK 63

Query: 75  LVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
           L+ D+++  L+ +   K   Q  +LLDGFPRT+PQAE +     
Sbjct: 64  LIPDDVMTRLVLHE-LKNLTQYNWLLDGFPRTLPQAEALDRAYQ 106

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 1e-20
 Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS-SGSNLGKKLKETMDAGKLVSDE 79
            +LG PG+GKGTQ     +KY   HLS G++LR E     S  G+ +++ +  GK+V  E
Sbjct: 5   FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 64

Query: 80  L----VVDLISNNLDKPECQNGFLLDGFPRTVPQAEK 112
           +    +   +   +     +N FL+DGFPR     + 
Sbjct: 65  ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQG 101

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.0 bits (183), Expect = 1e-18
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 9   PKESHESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV-SSGSNLGKKLK 67
           P  S +   V   +LG PG+GKGTQ     K Y   HLS GD+LRAE   +GS  G+ +K
Sbjct: 1   PAFSPDQVSV-IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIK 59

Query: 68  ETMDAGKLVSDELVVDLISNNLDKPE--CQNGFLLDGFPRTVPQAEKVYSLMM 118
             +  G++V  E+ + L+ N +       ++ FL+DGFPR + QA      ++
Sbjct: 60  NCIKEGQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIV 112

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 72.7 bits (177), Expect = 8e-18
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
            +LG PGSGKGTQ     + +   HLS GD+LR E  SGS  G+ +   +  G++V   +
Sbjct: 10  FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69

Query: 81  VVDLISNNLDKPECQNGFLLDGFPR 105
            V L+ N +D  +    FL+DGFPR
Sbjct: 70  TVKLLKNAIDANQG-KNFLVDGFPR 93

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 24 GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD 71
          GP G+GKGT     A+      L +G + R    +  +    +     
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDA 57

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Length = 223

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 60.0 bits (144), Expect = 9e-13
 Identities = 20/82 (24%), Positives = 29/82 (35%)

Query: 24  GPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVD 83
           GP  SGK T A + AK +   +L TG M RA           ++E      L+    +  
Sbjct: 10  GPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISF 69

Query: 84  LISNNLDKPECQNGFLLDGFPR 105
             S   D+        +    R
Sbjct: 70  GRSETGDQLVFVGDVDITHPIR 91

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-10
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 5/87 (5%)

Query: 19  NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSD 78
           N +L G PG GK T     A K  + +++ GD+ R E      L     E  D   L  D
Sbjct: 6   NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-----QLYDGYDEEYDCPILDED 60

Query: 79  ELVVDLISNNLDKPECQNGFLLDGFPR 105
            +V +L +   +     +    D FP 
Sbjct: 61  RVVDELDNQMREGGVIVDYHGCDFFPE 87

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 52.3 bits (124), Expect = 4e-10
 Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 17  GVNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL 75
           G+N ++ G PG+GK + A + A +     HL  G +++          +     ++    
Sbjct: 5   GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE---- 60

Query: 76  VSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
             ++    L+         +   ++D     +      + +++
Sbjct: 61  --EKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVV 101

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 52.3 bits (124), Expect = 5e-10
 Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 10/99 (10%)

Query: 21  ILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVSSGSNLGKKLKETMDA--- 72
           I+ G PG GK T      +           ++ GD + A          + +    +   
Sbjct: 5   IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64

Query: 73  GKLVSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
            K +  +    +      +   +    +D        + 
Sbjct: 65  QKKLQIDAAKGIA--EEARAGGEGYLFIDTHAVIRTPSG 101

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 51.5 bits (122), Expect = 9e-10
 Identities = 10/95 (10%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 21  ILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKL 75
           ++ G PG G  T + L              +S G ++              ++ M     
Sbjct: 5   VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK--EENLVSDRDQMRKMDP 62

Query: 76  VSDELVVDLISNNLDKPECQNGFLLDGFPRTVPQA 110
            + + +  +    + +   ++   +D         
Sbjct: 63  ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPK 97

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 50.1 bits (118), Expect = 2e-09
 Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 21  ILLGPPGSGKGTQA-PLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDE 79
           + +G PGSGK T A    AK     +++  D  ++ +   ++  +   +     + +   
Sbjct: 6   LTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM---AHEERDEYKYTKKKEGIVTG 62

Query: 80  LVVDLISNNLDKPECQNGFLLDGFPRTVPQAEKVYSLMM 118
           +  D   + L   +   G ++        +     +   
Sbjct: 63  MQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAK 101

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 49.6 bits (117), Expect = 4e-09
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 21  ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
           I+ GP G GK T     A +        GD++   V  G     +     D    ++ + 
Sbjct: 6   IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGY----RPPWESDELLALTWKN 61

Query: 81  VVDLISNNLDKPECQNGFLLDGFPRTVPQAE 111
           + DL  N L     QN  +LD          
Sbjct: 62  ITDLTVNFLL---AQNDVVLDYIAFPDEAEA 89

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 43.5 bits (101), Expect = 8e-07
 Identities = 13/79 (16%), Positives = 21/79 (26%)

Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDEL 80
          +L+G  GSGK   A   A +     L    +           G+ L +      L +   
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALND 69

Query: 81 VVDLISNNLDKPECQNGFL 99
              +             L
Sbjct: 70 AAFAMQRTNKVSLIVCSAL 88

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.2 bits (90), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLST-GDMLRAEVSSGS 60
          +L G PGSGK T A   A    V  +    D L   +  G 
Sbjct: 8  LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGR 48

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 36.1 bits (82), Expect = 4e-04
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 22 LLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKK 65
          L G   SGK T A      Y          ++  ++    +   
Sbjct: 6  LSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAA 49

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 34.9 bits (79), Expect = 7e-04
 Identities = 6/31 (19%), Positives = 10/31 (32%)

Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
           ++G  G G  T     A+      + T   
Sbjct: 6  FMVGARGCGMTTVGRELARALGYEFVDTDIF 36

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.0 bits (79), Expect = 8e-04
 Identities = 14/33 (42%), Positives = 16/33 (48%)

Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
           A+L+G PGSGK T     AK   V  L T   
Sbjct: 3  KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA 35

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
          N  L+GP G+GK T     A++  +    +   
Sbjct: 4  NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE 36

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDM 51
          N + +G  GSGK T A   AK   +  L +  +
Sbjct: 2  NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL 34

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 21 ILLGPPGSGKGTQAPLFAKKYCVCHLS-TGDMLRAEVSSGSNLGKK 65
          +L G PGSGK +      ++     +    D  + +  +   L K 
Sbjct: 36 LLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKL 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.95
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.95
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.95
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.94
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.93
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.92
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.92
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.92
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.91
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.91
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.9
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.9
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	99.46
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.41
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.41
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.37
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.35
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.32
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.29
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.28
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.26
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.25
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.23
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.14
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	99.1
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.09
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.06
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	99.05
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.05
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.03
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.0
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.99
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.93
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.91
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.88
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.81
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.75
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.66
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.62
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.61
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.57
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.55
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	98.54
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.53
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.52
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.52
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.51
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.5
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.48
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.47
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.47
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.4
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.38
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.36
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.35
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.35
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.28
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.27
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.27
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.25
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.21
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.19
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.17
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.11
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.11
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.1
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.1
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.09
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.09
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.06
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	98.05
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.05
d1okkd2	207	GTPase domain of the signal recognition particle r	98.04
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.03
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.03
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.99
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.99
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.97
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.96
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.96
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.94
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.93
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.92
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.91
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.89
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.86
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.86
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.84
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.8
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.77
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.76
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.75
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.72
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.68
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.66
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.66
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.65
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.63
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.62
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.61
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.61
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.6
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.6
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.58
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.58
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.57
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.57
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.56
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.55
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.55
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.54
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.53
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.52
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.5
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.49
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.48
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.47
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.47
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.47
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.46
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.45
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.44
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.44
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.44
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.43
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.43
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.42
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.42
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.41
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.4
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.4
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.38
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.37
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.36
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.36
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.35
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.32
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.32
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	97.3
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.3
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.29
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.27
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.27
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.27
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.27
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.26
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.24
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.24
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.23
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.21
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.21
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.2
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	97.19
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.18
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.18
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.18
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.17
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.16
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.15
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.13
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.13
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.12
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.12
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.1
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.09
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.08
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.06
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	97.06
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.04
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.02
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.02
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.01
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.01
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.99
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.99
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.99
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.98
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.97
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.95
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.92
d1tuea_	205	Replication protein E1 helicase domain {Human papi	96.91
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.91
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.87
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.84
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.82
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.82
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.79
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.77
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.74
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.73
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.72
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.66
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.66
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.62
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.61
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.6
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.51
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.5
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.49
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.46
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.45
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.45
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.44
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.41
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.28
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.18
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.18
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	96.17
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.17
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.16
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.06
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.99
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.98
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.98
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.97
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.93
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.91
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	95.88
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.84
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.69
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.6
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	95.57
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.55
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.52
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.51
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.41
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.41
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.39
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	95.36
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.33
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.27
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.24
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.22
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	95.18
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	94.99
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	94.9
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.86
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	94.82
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	94.59
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	94.45
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.38
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.35
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	94.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.0
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	93.87
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.85
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	93.81
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	93.62
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	93.53
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.4
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.37
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.36
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	93.18
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.11
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	92.95
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	92.82
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.73
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.67
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.59
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	92.15
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.97
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	91.9
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	91.1
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.72
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	90.72
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.66
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	89.7
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	86.93
d1texa_	265	Stf0 sulfotransferase {Mycobacterium smegmatis [Ta	86.85
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	85.79
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	85.44
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	84.68
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	84.59
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	83.69
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	83.58
d1vkja_	258	Heparan sulfate 3-O-sulfotransferase {Mouse (Mus m	83.44
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	83.12
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	82.42
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	81.4
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.02
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	80.88
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	80.86

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.95  E-value=2.3e-28  Score=163.62  Aligned_cols=103  Identities=39%  Similarity=0.678  Sum_probs=96.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCC
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPE   93 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~   93 (119)
                      |.+.++|+|+|||||||||+|+.||++||+.|+|+++++++++...+..+..+...+..|..++++++..++.+++...+
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999997754


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          94 CQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        94 ~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                       ..|||+||||++..|++.|++.+
T Consensus        83 -~~~~ildGfPr~~~q~~~l~~~~  105 (189)
T d2ak3a1          83 -QYNWLLDGFPRTLPQAEALDRAY  105 (189)
T ss_dssp             -TSCEEEESCCCSHHHHHHHHTTC
T ss_pred             -hcCcccccccchhhHHHHhhhcC
Confidence             47899999999999999998754

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.95  E-value=1.4e-27  Score=159.04  Aligned_cols=102  Identities=74%  Similarity=1.207  Sum_probs=96.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      ++.+|+|+|||||||||+|+.||++||+.|++++++++++...++..+..+..++..|..++++.+..++..++....+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~   81 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCK   81 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhcccccc
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999887778


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh
Q psy9244          96 NGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      +|||+||||++..|+..|...+
T Consensus        82 ~g~ii~g~pr~~~qa~~l~~~~  103 (190)
T d1ak2a1          82 NGFLLDGFPRTVRQAEMLDDLM  103 (190)
T ss_dssp             TCEEEESCCCSHHHHHHHHHHH
T ss_pred             CceeecccccchhHHHHHHHHh
Confidence            8999999999999999998764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=3.8e-27  Score=157.53  Aligned_cols=103  Identities=46%  Similarity=0.681  Sum_probs=96.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC-
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC-   94 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~-   94 (119)
                      ++..|+|+|||||||||+|+.||++||+.|+++++++++.....+..+..+.+++..|..++++++..++.+++....+ 
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   86 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDT   86 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhcccc
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999999977654 


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHhh
Q psy9244          95 QNGFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        95 ~~g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      .+|||+||||++..|++.+++.+.
T Consensus        87 ~~g~ildg~pr~~~qa~~~~~~~~  110 (194)
T d3adka_          87 SKGFLIDGYPREVKQGEEFERKIG  110 (194)
T ss_dssp             CSCEEEESCCSSHHHHHHHHHHTC
T ss_pred             cccceeeeccchhHHHHHHHHHhC
Confidence            579999999999999999988653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.94  E-value=8.5e-27  Score=154.35  Aligned_cols=101  Identities=52%  Similarity=0.909  Sum_probs=95.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.||++||+.|++++++++......++.+..++.++.+|..++++....++..++...++..+
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~   80 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccc
Confidence            47999999999999999999999999999999999999998999999999999999999999999999999998888889


Q ss_pred             EEEeCCCCCHHHHHHHHHHhh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l~  118 (119)
                      ||+||||++..|+..|.+.+.
T Consensus        81 ~vl~g~p~~~~~~~~l~~~~~  101 (182)
T d1s3ga1          81 FLLDGFPRTVPQAEALDQLLA  101 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHHH
T ss_pred             eeeeccccchhHHHHHHHHhh
Confidence            999999999999999987653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.5e-26  Score=151.61  Aligned_cols=100  Identities=56%  Similarity=0.932  Sum_probs=94.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|||||||||+|+.||++||+.|+++++++++....+++.+..+.+++..|..+|++++..++.+++...++.+|
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g   80 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG   80 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcccccccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999988877889


Q ss_pred             EEEeCCCCCHHHHHHHHHHh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l  117 (119)
                      ||+||||++..|+..+.+..
T Consensus        81 ~i~~g~pr~~~~~~~~~~~~  100 (179)
T d1e4va1          81 FLLDGFPRTIPQADAMKEAG  100 (179)
T ss_dssp             EEEESCCCSHHHHHHHHHTT
T ss_pred             eeecccccchHHhhhhhhcc
Confidence            99999999999999988753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.3e-25  Score=146.52  Aligned_cols=102  Identities=48%  Similarity=0.938  Sum_probs=94.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC-C
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC-Q   95 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~-~   95 (119)
                      .++|+|+|+|||||||+|+.||++||+.|+++++++++.....+..+..++.++..+..++++....++..++.+.++ .
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   81 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCcccc
Confidence            578999999999999999999999999999999999999999999999999999999999999999999988877654 4


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHhh
Q psy9244          96 NGFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~~l~  118 (119)
                      .|||+||||++..|++.+++.+.
T Consensus        82 ~g~i~dg~p~~~~q~~~~~~~l~  104 (180)
T d1akya1          82 NGFILDGFPRTIPQAEKLDQMLK  104 (180)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHH
T ss_pred             CCEeccCccchhhhHHHHHhhHH
Confidence            79999999999999999888764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=4.4e-25  Score=145.77  Aligned_cols=100  Identities=42%  Similarity=0.829  Sum_probs=95.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|.|+|||||||+|+.|+++||+.|++++++++++....++.+..+..++..|..++++++..++.+++...++..+
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   80 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANG   80 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCcccccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999998888889


Q ss_pred             EEEeCCCCCHHHHHHHHHHh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l  117 (119)
                      ||+||||++..|+..|.+..
T Consensus        81 ~i~d~~p~~~~~~~~l~~~~  100 (181)
T d2cdna1          81 FILDGYPRSVEQAKALHEML  100 (181)
T ss_dssp             EEEESCCCSHHHHHHHHHHH
T ss_pred             EEecccccchhHHHHHHHHH
Confidence            99999999999999998765

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-25  Score=147.36  Aligned_cols=102  Identities=34%  Similarity=0.613  Sum_probs=91.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc-CCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCC---
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS-GSNLGKKLKETMDAGKLVSDELVVDLISNNLDKP---   92 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~---   92 (119)
                      |++|+|+|||||||||+|+.||++||+.|+++++++|++... .++.++.+..++.++..++++.+..++..++...   
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            578999999999999999999999999999999999988764 5778899999999999999999999988887653   


Q ss_pred             -CCCCcEEEeCCCCCHHHHHHHHHHhh
Q psy9244          93 -ECQNGFLLDGFPRTVPQAEKVYSLMM  118 (119)
Q Consensus        93 -~~~~g~vldg~P~~~~q~~~l~~~l~  118 (119)
                       ...++|++||||++.+|++.++..+.
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~  107 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMD  107 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHT
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhh
Confidence             23579999999999999999988653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.91  E-value=3.6e-24  Score=142.61  Aligned_cols=101  Identities=36%  Similarity=0.589  Sum_probs=93.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQ   95 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~   95 (119)
                      +|..|+|+|||||||||+|+.||++||+.|+++++++++........+..+..++..+..++++.+..++..++.... .
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   83 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDANQ-G   83 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTST-T
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhhhh-c
Confidence            567899999999999999999999999999999999999999899999999999999999999999999998887654 4


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHh
Q psy9244          96 NGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        96 ~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      ++||+||||++.+|++.|++..
T Consensus        84 ~~~i~dg~p~~~~~~~~l~~~~  105 (194)
T d1qf9a_          84 KNFLVDGFPRNEENNNSWEENM  105 (194)
T ss_dssp             CCEEEETCCCSHHHHHHHHHHH
T ss_pred             CCeEEEecchhhhhHHHHHhhh
Confidence            7999999999999999998754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.91  E-value=4e-24  Score=140.64  Aligned_cols=100  Identities=50%  Similarity=0.881  Sum_probs=94.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ++|+|+|+|||||||+|+.||++||+.|++++++++......++.+..+..++..|..++++....++.+++...++..+
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNG   80 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcC
Confidence            47999999999999999999999999999999999999988999999999999999999999999999999988888899


Q ss_pred             EEEeCCCCCHHHHHHHHHHh
Q psy9244          98 FLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~~~l  117 (119)
                      ||+||||++..++..++...
T Consensus        81 ~v~~~~~~~~~~~~~~~~~~  100 (182)
T d1zina1          81 FLLDGFPRTVAQAEALETML  100 (182)
T ss_dssp             EEEESCCCSHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHhh
Confidence            99999999999999888764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.3e-23  Score=140.13  Aligned_cols=105  Identities=36%  Similarity=0.626  Sum_probs=90.9

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh-cCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcC
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS-SGSNLGKKLKETMDAGKLVSDELVVDLISNNLDK   91 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~   91 (119)
                      .|.+..+|+|+|||||||||+|+.||++||+.||+++++++.... ..+..+..+..+...+..+++..+..++..++..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   83 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISD   83 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHHHh
Confidence            345567899999999999999999999999999999999988765 4578899999999999999999988888777665


Q ss_pred             CC--CCCcEEEeCCCCCHHHHHHHHHHh
Q psy9244          92 PE--CQNGFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        92 ~~--~~~g~vldg~P~~~~q~~~l~~~l  117 (119)
                      ..  ...+||+||||++.+|+..+.+.+
T Consensus        84 ~~~~~~~~~vl~g~p~~~~q~~~~~~~~  111 (196)
T d1ukza_          84 NVKANKHKFLIDGFPRKMDQAISFERDI  111 (196)
T ss_dssp             HHHTTCCEEEEETCCCSHHHHHHHHHHT
T ss_pred             hhccCCCceeeeccchhHHHHHHHHHhc
Confidence            32  246999999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.90  E-value=9.5e-24  Score=140.23  Aligned_cols=101  Identities=46%  Similarity=0.836  Sum_probs=91.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCC-
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPEC-   94 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~-   94 (119)
                      +|++|+|.|||||||||+|+.|+++||+.|+++++++++......+....+...+..|..++.+.....+...+....+ 
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   81 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   81 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhcccc
Confidence            5789999999999999999999999999999999999999998888999999999999999999888888777766543 


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHH
Q psy9244          95 QNGFLLDGFPRTVPQAEKVYSL  116 (119)
Q Consensus        95 ~~g~vldg~P~~~~q~~~l~~~  116 (119)
                      .+|||+||||++.+|+..|++.
T Consensus        82 ~~~~vid~~~~~~~q~~~l~~~  103 (189)
T d1zaka1          82 ENGWLLDGYPRSYSQAMALETL  103 (189)
T ss_dssp             HTCEEEESCCCSHHHHHHHHTT
T ss_pred             cCcEEeeccchhhHHHhhhhhc
Confidence            3699999999999999999764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=2.7e-14  Score=95.19  Aligned_cols=41  Identities=27%  Similarity=0.356  Sum_probs=37.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      ++.|.|.|||||||||+|+.||++||+.|+|+++|+|+...
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR~~a~   43 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLAL   43 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHHH
Confidence            45889999999999999999999999999999999998653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.41  E-value=5.1e-13  Score=84.25  Aligned_cols=97  Identities=15%  Similarity=0.137  Sum_probs=64.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc-CccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY-CVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQN   96 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~-~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~   96 (119)
                      ..|+|+|+|||||||+|+.|++.+ ++.+++.+++.+..............   .........+...++...+.......
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYT---KKKEGIVTGMQFDTAKSILYGGDSVK   79 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCC---HHHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhh---hhhhHHHHHHHHHHHHHHHHhhccCC
Confidence            357899999999999999987654 89999999988776543221100000   00001112345556666676666667


Q ss_pred             cEEEeCCCCCHHHHHHHHHHh
Q psy9244          97 GFLLDGFPRTVPQAEKVYSLM  117 (119)
Q Consensus        97 g~vldg~P~~~~q~~~l~~~l  117 (119)
                      .+|+|+...+....+.+.+.+
T Consensus        80 ~vi~d~~~~~~~~~~~~~~~~  100 (152)
T d1ly1a_          80 GVIISDTNLNPERRLAWETFA  100 (152)
T ss_dssp             EEEECSCCCSHHHHHHHHHHH
T ss_pred             CcccccccCCHHHHHHHHHhh
Confidence            899999888888777776654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.41  E-value=1e-13  Score=92.71  Aligned_cols=40  Identities=38%  Similarity=0.543  Sum_probs=36.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..+|.|.|||||||||+|+.||++||+.|+|.++++|...
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl~R~~a   42 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAAT   42 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHHHHH
Confidence            4567888999999999999999999999999999999865

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.37  E-value=2e-13  Score=87.36  Aligned_cols=39  Identities=36%  Similarity=0.491  Sum_probs=36.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ++|+|+|+|||||||+|+.||+++|+.+++.+++++...
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~   43 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ   43 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhc
Confidence            579999999999999999999999999999999987654

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.35  E-value=1.7e-12  Score=83.23  Aligned_cols=42  Identities=29%  Similarity=0.604  Sum_probs=35.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcC-ccccchhHHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYC-VCHLSTGDMLRAEV   56 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~-~~~is~~~l~~~~~   56 (119)
                      +++.+|+|+|+|||||||+|+.|+++++ ..+++.+++.....
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~   45 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH   45 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHh
Confidence            3567899999999999999999999996 57777777766554

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=8.7e-12  Score=81.08  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=35.3

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDML   52 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~   52 (119)
                      ....+..|+++|+|||||||+|+.+++.+++.+++.|++.
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~   49 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG   49 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHH
Confidence            3455778999999999999999999999999999998764

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.29  E-value=1.1e-11  Score=79.93  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=34.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      .|+|+|+|||||||+|+.||+++|+.+++.|+++.+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~   41 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS   41 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhh
Confidence            48899999999999999999999999999999886653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.28  E-value=1.9e-12  Score=83.16  Aligned_cols=38  Identities=29%  Similarity=0.412  Sum_probs=35.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      +|+|+|+|||||||+++.||+++|+.++++|+++++..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~   39 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF   39 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHH
Confidence            58999999999999999999999999999999887654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.26  E-value=4.4e-12  Score=80.73  Aligned_cols=90  Identities=22%  Similarity=0.168  Sum_probs=52.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhhcCcccCHHHHHHHHHHhhcCCCCCCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMDAGKLVSDELVVDLISNNLDKPECQNG   97 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~l~~~~~~~g   97 (119)
                      ..|+|+|+|||||||+|+.|+++++..++..++.++..............    .+.......+..++...+.   ...+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~   75 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESD----ELLALTWKNITDLTVNFLL---AQND   75 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCH----HHHHHHHHHHHHHHHHHHH---TTCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHH----HHHHHHHHHHHHHHHHHHh---cCCC
Confidence            46899999999999999999999987766555655554432211100000    0111112233334444333   2467


Q ss_pred             EEEeCCCCCHHHHHHHH
Q psy9244          98 FLLDGFPRTVPQAEKVY  114 (119)
Q Consensus        98 ~vldg~P~~~~q~~~l~  114 (119)
                      +|+|++.........+.
T Consensus        76 ~iid~~~~~~~~~~~~~   92 (176)
T d2bdta1          76 VVLDYIAFPDEAEALAQ   92 (176)
T ss_dssp             EEEESCCCHHHHHHHHH
T ss_pred             cccccccccHHHHHHHH
Confidence            88888866655544433

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=2.7e-12  Score=82.56  Aligned_cols=39  Identities=36%  Similarity=0.435  Sum_probs=35.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ++|+|+|+|||||||+|+.||+++|+.++++|+++.+..
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~   40 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT   40 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhh
Confidence            468888999999999999999999999999999876553

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.8e-12  Score=79.70  Aligned_cols=39  Identities=23%  Similarity=0.401  Sum_probs=35.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVS   57 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~   57 (119)
                      .|+|+|+|||||||+|+.||+++++.+++.+++......
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~   42 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG   42 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhc
Confidence            699999999999999999999999999999988777654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=1.7e-11  Score=80.61  Aligned_cols=39  Identities=15%  Similarity=0.240  Sum_probs=29.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc-----cccchhHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV-----CHLSTGDMLRAE   55 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~-----~~is~~~l~~~~   55 (119)
                      |..|+++|.|||||||+|++|++.++.     ..++.|++.+..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~   45 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM   45 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhh
Confidence            567899999999999999999988754     345666543333

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.10  E-value=1.6e-11  Score=78.71  Aligned_cols=36  Identities=17%  Similarity=0.086  Sum_probs=32.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      +..+.+|+|+|+|||||||+|++||+++|..+++.+
T Consensus         4 ~~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           4 PFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             GGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            456789999999999999999999999999887654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=3.9e-11  Score=76.57  Aligned_cols=41  Identities=22%  Similarity=0.223  Sum_probs=35.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      +.+..|+|+|+|||||||+|+.|++++++.+++.+++....
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~   44 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR   44 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHH
Confidence            34567889999999999999999999999999998875443

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.06  E-value=3.9e-11  Score=76.61  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=28.9

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ...++..|+|+|+|||||||+|+.||++++..++
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~   35 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGG   35 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence            4567889999999999999999999999864443

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=99.05  E-value=1.9e-10  Score=76.25  Aligned_cols=53  Identities=32%  Similarity=0.273  Sum_probs=44.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhhhh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKETMD   71 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~~~   71 (119)
                      ..|.|+|++||||||+|+.|. ++|+.++|+|++.++.+..+......+.+.+.
T Consensus         3 ~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~~~   55 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVVAREVVAKDSPLLSKIVEHFG   55 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHHHHHTTCSSCHHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHHHHHHHhccchhHHHHHHhcc
Confidence            568899999999999999886 68999999999999988777766666655443

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=1.8e-10  Score=75.26  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=37.5

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSS   58 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~   58 (119)
                      +.|+.|.|+|++||||||+|+.| +++|+.+++.|++.+.....
T Consensus         1 k~p~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~~~~~~   43 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAARAREN   43 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHHHhhhc
Confidence            35788999999999999999999 56899999999998876654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.03  E-value=9.5e-11  Score=75.19  Aligned_cols=40  Identities=20%  Similarity=0.254  Sum_probs=31.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVS   57 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~~   57 (119)
                      ..|+|.|+|||||||+++.|+++++     +.+++.++..+....
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~   46 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK   46 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHH
Confidence            4689999999999999999998864     445566777666553

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.1e-11  Score=79.31  Aligned_cols=43  Identities=16%  Similarity=0.142  Sum_probs=34.3

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAE   55 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~   55 (119)
                      ...++..|+|+|+|||||||+|+.|+++++..+++.+.+..+.
T Consensus        15 ~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~   57 (195)
T d1x6va3          15 GGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   57 (195)
T ss_dssp             CSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHh
Confidence            3447889999999999999999999999877766665544443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.99  E-value=2.1e-10  Score=77.87  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc--CccccchhHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY--CVCHLSTGDML   52 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~--~~~~is~~~l~   52 (119)
                      ...|..|+|.|||||||||+|++||..+  ++..++.+++.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~   69 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   69 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH
Confidence            3445679999999999999999999987  45667777764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=7.4e-10  Score=73.53  Aligned_cols=51  Identities=25%  Similarity=0.278  Sum_probs=42.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHHhcCCcHHHHHHhh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEVSSGSNLGKKLKET   69 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~~~~~~~~~~~~~~   69 (119)
                      ..|.|+|++||||||+|+.|. ++|+.++++|++.++...........+.+.
T Consensus         4 ~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i~~~l~~~~~~~~~~i~~~   54 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA-DLGINVIDADIIARQVVEPGAPALHAIADH   54 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHHHHHTTSTTCTHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHHHHHHHhccchHHHHHHHH
Confidence            467899999999999999886 789999999999999987766655555443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.91  E-value=2.2e-10  Score=73.03  Aligned_cols=40  Identities=35%  Similarity=0.353  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch-hHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST-GDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~-~~l~~~~~   56 (119)
                      +..|+|+|+|||||||+|+.|++++|..++++ .+.++...
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~   44 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI   44 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHH
Confidence            45788999999999999999999998776654 23444433

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.88  E-value=5.5e-10  Score=71.00  Aligned_cols=31  Identities=19%  Similarity=0.079  Sum_probs=26.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ...|+|+|+|||||||+|+.|+++++..+++
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~   33 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLA   33 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence            3468889999999999999999999865543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.81  E-value=2e-09  Score=69.08  Aligned_cols=40  Identities=25%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC-----ccccchhHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC-----VCHLSTGDMLRAEVS   57 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~-----~~~is~~~l~~~~~~   57 (119)
                      ..|+|.|+|||||||+++.|++.++     +.+++.++.......
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~~~~   46 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATAL   46 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchHHHH
Confidence            4567899999999999999999874     345666776655543

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.75  E-value=4.6e-09  Score=70.53  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=33.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRAEV   56 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~~~   56 (119)
                      ..|.|+|+.||||||+|+.|++++|+.+++.+|.+...+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i~~~l   40 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDAL   40 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHHHHHH
Confidence            578999999999999999999999999999655444443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.66  E-value=1e-08  Score=68.17  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=31.8

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc------CccccchhHHHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY------CVCHLSTGDMLRAEV   56 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~------~~~~is~~~l~~~~~   56 (119)
                      ..++..|+|+|.|||||||+|+.|++++      .+.+++.|+ ++..+
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~-iR~~l   68 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN-IRFGL   68 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH-HTTTT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH-HHHhh
Confidence            4577899999999999999999998754      344566554 44444

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=1e-08  Score=68.62  Aligned_cols=29  Identities=34%  Similarity=0.465  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ..++|+||||+||||+|+.+|+++++.++
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            46999999999999999999999886654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.61  E-value=8.5e-09  Score=66.50  Aligned_cols=30  Identities=20%  Similarity=0.087  Sum_probs=25.3

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      +..+..|.|.|++||||||+|+.|++.++.
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            345677889999999999999999987653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.8e-08  Score=65.46  Aligned_cols=27  Identities=15%  Similarity=0.047  Sum_probs=24.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      |..|.|+|++||||||+|+.|++.++.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            678999999999999999999998864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.55  E-value=1.8e-08  Score=67.53  Aligned_cols=31  Identities=35%  Similarity=0.444  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      +..++|.||||+||||+|+.+|+.+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~   65 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRV   65 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            3469999999999999999999998766543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.7e-07  Score=62.03  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +++..|+|.|+.||||||+++.|++.+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence            356778899999999999999999875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=2.6e-08  Score=67.78  Aligned_cols=38  Identities=32%  Similarity=0.447  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDMLRA   54 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~~~   54 (119)
                      +..|++.||||+|||++|+++|+++++.++  +..+++..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~   81 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM   81 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhc
Confidence            456999999999999999999999987664  55566653

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=2.8e-08  Score=67.97  Aligned_cols=37  Identities=30%  Similarity=0.464  Sum_probs=29.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccc--cchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCH--LSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~--is~~~l~   52 (119)
                      .+..+++.||||+|||++|+.+|+++++.+  ++..+++
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~   82 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV   82 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhh
Confidence            346799999999999999999999988765  4554444

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.52  E-value=2.3e-08  Score=67.94  Aligned_cols=32  Identities=31%  Similarity=0.378  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      +..|+|.||||||||++|+++|+..++.++.+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i   71 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKI   71 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccccc
Confidence            35699999999999999999999998876644

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.51  E-value=3.1e-08  Score=63.09  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=23.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ++|+|+|||||||||+++.++..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            47999999999999999999987643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.50  E-value=2.8e-08  Score=69.52  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcc--ccchhHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVC--HLSTGDML   52 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~--~is~~~l~   52 (119)
                      +..|+++||||+|||.+|++||+.++..  .+++.++.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~   86 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT   86 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccchhcccccccc
Confidence            4568999999999999999999998654  45665654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=4.3e-08  Score=61.70  Aligned_cols=24  Identities=17%  Similarity=0.056  Sum_probs=21.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +.|+|+|++||||||+++.|++++
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            479999999999999999999764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=5e-08  Score=65.48  Aligned_cols=30  Identities=43%  Similarity=0.501  Sum_probs=26.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      ...++|.||||+||||+|+++|+.+++.++
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            457999999999999999999999876544

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.3e-08  Score=62.10  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=22.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+|+|+|+|||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            469999999999999999999875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.40  E-value=6.7e-08  Score=70.79  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=28.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      +.+|+++||+|||||.+|+.||+..+++++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~   80 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKV   80 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence            45899999999999999999999988887644

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=1.2e-07  Score=65.81  Aligned_cols=38  Identities=21%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc--------CccccchhHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY--------CVCHLSTGDML   52 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~--------~~~~is~~~l~   52 (119)
                      +.|..|.|.|++||||||+|..|.+.+        .+.++|+|++.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY   70 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   70 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC
Confidence            346788999999999999998876542        45678999974

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=1.3e-07  Score=64.37  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=27.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      +..|++.||||+|||++++++|...+..++.+
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~~~~~i   69 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGAFFFLI   69 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCCeEEEE
Confidence            44699999999999999999999988665543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.3e-07  Score=64.80  Aligned_cols=36  Identities=25%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDML   52 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l~   52 (119)
                      +..|+|.||||+|||++++++|.++++.++  +..++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~   78 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL   78 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhh
Confidence            456999999999999999999999987755  444554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.35  E-value=1.3e-07  Score=62.81  Aligned_cols=25  Identities=36%  Similarity=0.622  Sum_probs=22.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..++|.||||+||||+|+.+|++++
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHH
Confidence            4689999999999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.8e-07  Score=64.52  Aligned_cols=41  Identities=20%  Similarity=0.185  Sum_probs=33.8

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHc-------CccccchhHHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKY-------CVCHLSTGDMLR   53 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~-------~~~~is~~~l~~   53 (119)
                      ..+.|..|.|.|++||||||+|+.|++.+       .+.++++|++..
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            45678899999999999999999999865       356789998764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.27  E-value=1.7e-07  Score=60.72  Aligned_cols=33  Identities=24%  Similarity=0.197  Sum_probs=28.1

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      .-.+|..|+|.|+.||||||+++.|++.++...
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~   37 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDIC   37 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            346678999999999999999999999886443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.27  E-value=3.1e-07  Score=59.05  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=22.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..|+|+||+||||||+++.|.+++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578999999999999999999875

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.25  E-value=3.5e-07  Score=65.33  Aligned_cols=33  Identities=24%  Similarity=0.155  Sum_probs=29.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCccccch
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCVCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~~~is~   48 (119)
                      +...+++.||||+|||++|+.||+.++..++++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            345899999999999999999999999888765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=3.7e-07  Score=60.42  Aligned_cols=26  Identities=31%  Similarity=0.384  Sum_probs=22.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      .++|.||||+||||+|+.+++.++..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhcc
Confidence            58999999999999999999876543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.19  E-value=6.6e-07  Score=59.75  Aligned_cols=27  Identities=33%  Similarity=0.433  Sum_probs=23.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+..++|.||||+|||++++.+++.+
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=5.7e-07  Score=58.44  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~   42 (119)
                      |+|+||+||||||+++.|+++++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            88999999999999999998754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=8.7e-07  Score=58.58  Aligned_cols=24  Identities=29%  Similarity=0.643  Sum_probs=21.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..++|+||||+||||+++.+++++
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHHH
Confidence            358999999999999999999874

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=9.3e-07  Score=61.82  Aligned_cols=37  Identities=22%  Similarity=0.335  Sum_probs=28.8

Q ss_pred             CCCc-eEEEEcCCCCCHHHHHHHHHhHcCcccc--chhHH
Q psy9244          15 STGV-NAILLGPPGSGKGTQAPLFAKKYCVCHL--STGDM   51 (119)
Q Consensus        15 ~~~~-~i~i~G~pGsGKstla~~la~~~~~~~i--s~~~l   51 (119)
                      .++. .++++||+|+|||.+|+.||+.++..++  ++.++
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~   88 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY   88 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccc
Confidence            3444 6889999999999999999999876544  55444

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=8.1e-07  Score=59.27  Aligned_cols=26  Identities=27%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ....++|+||||+||||+++.+++.+
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            34469999999999999999999875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=1.1e-06  Score=58.39  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=23.6

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      |.+|..|+++||+||||||.+.+||.++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4566788999999999999988888654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.09  E-value=7.6e-07  Score=61.71  Aligned_cols=38  Identities=13%  Similarity=0.197  Sum_probs=28.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDML   52 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~   52 (119)
                      ++.+.|.|+|++||||||+|+.|.+.+     +..+++.|+..
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            456689999999999999999998765     34578888764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=9.4e-07  Score=57.08  Aligned_cols=22  Identities=32%  Similarity=0.625  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~   41 (119)
                      |+|+||+||||||+++.|++++
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998875

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=1.3e-06  Score=57.60  Aligned_cols=24  Identities=29%  Similarity=0.670  Sum_probs=21.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .++|.||||+||||+++.++++++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            589999999999999999998753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=3.7e-06  Score=55.48  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=24.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ++.-|+|-|+-||||||+++.|++.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            567799999999999999999999874

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.05  E-value=1.5e-06  Score=54.87  Aligned_cols=24  Identities=21%  Similarity=0.063  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..|.|+|.+||||||++..|..++
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356799999999999999998764

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.04  E-value=2.2e-06  Score=56.74  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=23.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..++..|+++||+||||||.+-+||..+
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456788999999999999988888754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.03  E-value=2.1e-06  Score=56.97  Aligned_cols=28  Identities=32%  Similarity=0.427  Sum_probs=19.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+.|..|+++||+|+||||.+.+||..+
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456778899999999999998998754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.03  E-value=2.8e-06  Score=56.20  Aligned_cols=36  Identities=22%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHc-----CccccchhHHHHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGDMLRAE   55 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~-----~~~~is~~~l~~~~   55 (119)
                      ++|.|++|||||+++++++.++     .+.+++..++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM   79 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHH
Confidence            8999999999999999999864     46677877776554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.1e-06  Score=56.13  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +.-|+|.|+.||||||+++.|++.+
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.99  E-value=3.4e-06  Score=55.75  Aligned_cols=30  Identities=33%  Similarity=0.284  Sum_probs=24.2

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..+.+..|+++||+||||||.+.+||..+
T Consensus         5 p~~~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           5 PVLKDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CCCCSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            344556678889999999999999998754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.97  E-value=2.2e-06  Score=61.13  Aligned_cols=30  Identities=37%  Similarity=0.473  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCcccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHL   46 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~i   46 (119)
                      +-+++++||+|+|||.+|++||+.++..++
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            456999999999999999999997754443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=2.5e-06  Score=55.34  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +.|+|.|..||||||+++.|++++
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999999865

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.7e-06  Score=56.41  Aligned_cols=29  Identities=28%  Similarity=0.273  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCH   45 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~   45 (119)
                      |..|+|-|+-||||||+++.|++.++-..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence            56789999999999999999999886443

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=4.8e-06  Score=55.17  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD   50 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~   50 (119)
                      ...|..|+++||+||||||.+.+||..+     .+..+++|.
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   47 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT   47 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence            3446788899999999999999998654     344555543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.93  E-value=1.6e-06  Score=58.12  Aligned_cols=23  Identities=30%  Similarity=0.234  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++|+||||+|||++++.+++.+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            34667999999999999999874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.7e-06  Score=57.24  Aligned_cols=27  Identities=15%  Similarity=0.078  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      +...|+|-|+.||||||+++.|++.+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            356899999999999999999999874

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.91  E-value=5.9e-06  Score=54.63  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=26.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG   49 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~   49 (119)
                      +...++|.|+||||||++|..++...     .+.+++.+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            45678999999999999999998763     35566543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.89  E-value=4.2e-06  Score=55.19  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..|+|+|++||||||+...|.+.+
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHH
Confidence            368999999999999999997643

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.2e-06  Score=52.98  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..|+|+||+||||+|+++.|.+++
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            358899999999999999998764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.86  E-value=2.9e-06  Score=59.52  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=26.1

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC--c--cccchhHHHHH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC--V--CHLSTGDMLRA   54 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~--~--~~is~~~l~~~   54 (119)
                      ++++||||+|||.+|+.||.+.+  .  ..++..+++..
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~  164 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG  164 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTT
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhc
Confidence            44579999999999999999864  3  34555565543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=6.3e-06  Score=54.17  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=22.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..|+|+||+||||||+.+.|.+++
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578999999999999999998864

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.80  E-value=6.6e-06  Score=51.71  Aligned_cols=29  Identities=17%  Similarity=0.210  Sum_probs=25.5

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .++++..+|+|+|.+||||||+..+|...
T Consensus         8 ~~~~k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_           8 GLYKKTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             TCTTCCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46788899999999999999999999653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.77  E-value=9.2e-06  Score=49.97  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++|+|+|.|||||||+..++...
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47999999999999999999753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=7.7e-06  Score=57.46  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ...+..+|.|+|+|||||||+...|+..+
T Consensus        50 ~~~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          50 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ccCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            34568899999999999999999998653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.75  E-value=1.1e-05  Score=53.61  Aligned_cols=27  Identities=15%  Similarity=0.202  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ...++|.|++|+|||++++.+++..+.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            457889999999999999999987654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.72  E-value=1.1e-05  Score=56.64  Aligned_cols=28  Identities=21%  Similarity=0.368  Sum_probs=24.6

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+..+|-|+|+||+||||+...|.+.
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHH
Confidence            4457789999999999999999999875

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.68  E-value=1.1e-05  Score=56.38  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=23.3

Q ss_pred             CCCCc-eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          14 ESTGV-NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        14 p~~~~-~i~i~G~pGsGKstla~~la~~~   41 (119)
                      |.++. .++++||+|+|||.+|+.||+.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            34455 57888999999999999999975

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.6e-05  Score=50.26  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=23.8

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .|.+..+|+|+|.+|+|||++..++...
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhC
Confidence            3556689999999999999999998753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.8e-05  Score=50.41  Aligned_cols=25  Identities=24%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+.|.|+||||||++|..++..
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.66  E-value=2.2e-05  Score=49.69  Aligned_cols=30  Identities=20%  Similarity=0.136  Sum_probs=26.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHcCcc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKYCVC   44 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~~~~   44 (119)
                      +++..|++.|.-||||||+++.+++.+|+.
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            345678999999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.65  E-value=2e-05  Score=49.60  Aligned_cols=28  Identities=32%  Similarity=0.360  Sum_probs=24.1

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..|.+..+|+|+|.+||||||+..++..
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhc
Confidence            4456678999999999999999999854

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.63  E-value=1.5e-05  Score=50.06  Aligned_cols=27  Identities=22%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .++-.+|+|+|.|||||||+..+|...
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            355689999999999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=2.1e-05  Score=52.72  Aligned_cols=24  Identities=33%  Similarity=0.610  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|+||.||||||+.+.++-
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            456899999999999999999985

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.9e-05  Score=52.55  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=22.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..++|.||||+|||++|+.+++.++
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            4589999999999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.61  E-value=1.8e-05  Score=53.02  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=22.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +++..+.|+|++||||||+.+.++-
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCcchhhHhccC
Confidence            3467899999999999999999985

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.60  E-value=1.6e-05  Score=53.90  Aligned_cols=25  Identities=40%  Similarity=0.595  Sum_probs=22.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++..+.|+|++||||||+++.|+.-
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcc
Confidence            4568999999999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.4e-05  Score=53.84  Aligned_cols=26  Identities=35%  Similarity=0.511  Sum_probs=22.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++.++.|+|++||||||+++.|..-+
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            45789999999999999999998743

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=2.7e-05  Score=50.93  Aligned_cols=26  Identities=12%  Similarity=0.174  Sum_probs=22.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      +..++|.||||+||||+|+.+|+.+.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            44599999999999999999998763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2e-05  Score=53.33  Aligned_cols=27  Identities=44%  Similarity=0.695  Sum_probs=23.2

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +++..+.|+|+.||||||+++.|..-+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            446789999999999999999998643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.57  E-value=1.1e-05  Score=56.25  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      -.++|.|+||+|||++|+.+++-+
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            369999999999999999999754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=3e-05  Score=50.63  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+++++|+||+|||++++.||++
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            458999999999999999999985

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.56  E-value=2.2e-05  Score=52.91  Aligned_cols=26  Identities=31%  Similarity=0.508  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..+.|+|+.||||||+.+.|+.-+
T Consensus        27 ~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          27 PNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            45689999999999999999998643

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.55  E-value=3e-05  Score=49.70  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++|+|+|.|||||||+...|..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            3799999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2.2e-05  Score=52.89  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+|++||||||+++.|+-
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            456889999999999999999985

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.54  E-value=2.4e-05  Score=52.63  Aligned_cols=24  Identities=46%  Similarity=0.673  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+||.||||||+.+.|+.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            456899999999999999999985

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.53  E-value=3e-05  Score=48.31  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.+||||||+..+|...
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCC
Confidence            468999999999999999999763

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.52  E-value=3.1e-05  Score=49.81  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      ..-|+|+|++|+||||+|-.|.++ |..+++-|.
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~   46 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQR-GHRLIADDR   46 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCe
Confidence            456899999999999999998875 666666443

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.50  E-value=3.9e-05  Score=47.27  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      -.+|+|+|.||+||||+..++...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999753

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=3.8e-05  Score=51.60  Aligned_cols=24  Identities=42%  Similarity=0.653  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|+||.||||||+.+.++.
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHc
Confidence            456889999999999999999985

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=3.7e-05  Score=52.80  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++..+.|+|+.||||||+.+.|+..
T Consensus        61 ~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          61 KGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCChHHHHHHHHhCC
Confidence            4578999999999999999999864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=6.3e-05  Score=47.59  Aligned_cols=28  Identities=21%  Similarity=0.367  Sum_probs=23.7

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .....++|+|+|.+++||||+..+|...
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3445789999999999999999999753

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=4.4e-05  Score=52.12  Aligned_cols=24  Identities=33%  Similarity=0.418  Sum_probs=21.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+++|+|+||+|||++++.||++
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            357999999999999999999975

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=2.6e-05  Score=51.00  Aligned_cols=24  Identities=29%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +...++|.|+||||||++|..++.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            456789999999999999998874

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.46  E-value=3.5e-05  Score=49.56  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      ..-++|.|++|+||||+|-.|.++ |..+++-|.
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~   47 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK-NHLFVGDDA   47 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEE
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc-CCceecCCe
Confidence            456899999999999999998764 666666543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.45  E-value=3.7e-05  Score=52.22  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+..+.|+|+.||||||+++.|+-
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHc
Confidence            3466899999999999999999974

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.44  E-value=2.8e-05  Score=52.02  Aligned_cols=24  Identities=38%  Similarity=0.609  Sum_probs=21.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|+||.||||||+.+.|+-
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            456899999999999999999985

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.44  E-value=2.8e-05  Score=50.85  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|+||.||||||+.+.|+.
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            456789999999999999999986

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=4.1e-05  Score=47.74  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+|||++..++..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999998875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=4e-05  Score=47.37  Aligned_cols=23  Identities=26%  Similarity=0.562  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +.+|+|+|.|++||||+..+|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999974

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.43  E-value=4.9e-05  Score=48.54  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGD   50 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~   50 (119)
                      ..-|+|.|++|+||||+|-.|.++ |..+++-|.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~   47 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR-GHRLVADDN   47 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSE
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCe
Confidence            457899999999999999888776 666666544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.42  E-value=5.1e-05  Score=46.35  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~   40 (119)
                      +|+|+|+|++||||+..+|...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.42  E-value=4.3e-05  Score=50.32  Aligned_cols=25  Identities=32%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....++|.|+||||||++|-.++..
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999864

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.41  E-value=4.7e-05  Score=45.99  Aligned_cols=29  Identities=7%  Similarity=0.119  Sum_probs=25.3

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .++.++.|+++|.+||||+|+|.+|...+
T Consensus         2 r~kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           2 RPKQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             CCccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            45678899999999999999999997654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.40  E-value=2.4e-05  Score=52.71  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|+||+||||||+.+.|+-
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            467899999999999999999985

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.40  E-value=4.9e-05  Score=51.09  Aligned_cols=22  Identities=41%  Similarity=0.629  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      -.+.|+||.||||||+.+.|+.
T Consensus        25 e~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCChHHHHHHHHHc
Confidence            4677999999999999999995

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.38  E-value=2.5e-05  Score=53.02  Aligned_cols=25  Identities=28%  Similarity=0.456  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|+|++||||||+.+.|+.-
T Consensus        43 ~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          43 KGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhc
Confidence            4568999999999999999999854

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.37  E-value=8.7e-05  Score=44.87  Aligned_cols=31  Identities=29%  Similarity=0.243  Sum_probs=24.4

Q ss_pred             CCCCCCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          12 SHESTGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        12 ~~p~~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..|..-.+.+|.+|.|||||+++-.+..+.+
T Consensus         3 ~~~~~~~~~ll~apTGsGKT~~~~~~~~~~~   33 (136)
T d1a1va1           3 AVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG   33 (136)
T ss_dssp             CCCSSCEEEEEECCTTSCTTTHHHHHHHTTT
T ss_pred             CCccCCCEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            4556667889999999999999876665554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.9e-05  Score=49.20  Aligned_cols=24  Identities=13%  Similarity=0.050  Sum_probs=21.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +...++|.|+||||||++|..++.
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999985

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=6.6e-05  Score=47.04  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+||||+..++..
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            6899999999999999999875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.3e-05  Score=47.74  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+||||+..++..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            6899999999999999999974

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=0.00052  Score=44.46  Aligned_cols=26  Identities=12%  Similarity=0.061  Sum_probs=23.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+..+++.|+||+|||++|..+++..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i   39 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYV   39 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999743

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=7.7e-05  Score=46.76  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++|+|+|.+|+||||+..++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            5899999999999999999864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=7.5e-05  Score=46.82  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++.+++..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6899999999999999999986

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=97.30  E-value=6.6e-05  Score=52.71  Aligned_cols=27  Identities=33%  Similarity=0.278  Sum_probs=24.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ...+|+|-|+-||||||+++.|++.++
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhc
Confidence            357899999999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.30  E-value=8.5e-05  Score=46.22  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|+++|||||+..++...
T Consensus         3 ~ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           3 MELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            58999999999999999999753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=8e-05  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+++|.+|+|||++..++..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999999875

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=8.7e-05  Score=46.64  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           4 FKYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            5899999999999999999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=9.3e-05  Score=47.43  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++|+|+|+|++||||+..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            48999999999999999999753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=8.7e-05  Score=46.57  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|||||++..++..
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.27  E-value=4.8e-05  Score=47.83  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=23.2

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .++..+|+|+|.++|||||+..++..
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTC
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhc
Confidence            45678999999999999999999975

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=9.6e-05  Score=46.50  Aligned_cols=22  Identities=27%  Similarity=0.595  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+||||+..++..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999998865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=9.3e-05  Score=46.30  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      .|+|+|.|+|||||+..+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999974

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0001  Score=45.93  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999999875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=9.9e-05  Score=45.99  Aligned_cols=24  Identities=25%  Similarity=0.437  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.+|+|||++..++...
T Consensus         3 ~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhC
Confidence            368999999999999999999763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.0001  Score=45.75  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+|||++..++..
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999999975

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.24  E-value=7.7e-05  Score=52.07  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=21.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .+|+|+|++||||||+.++|....
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=9.2e-05  Score=46.92  Aligned_cols=26  Identities=12%  Similarity=0.298  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++..+|+|+|.+|+|||++..++.+.
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhC
Confidence            34578999999999999999998763

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.23  E-value=7.6e-05  Score=50.08  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|+||.||||||+.+.|+-
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            456889999999999999999985

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=8.8e-05  Score=46.24  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+|+|+|.+|+|||++..++..
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCcCHHHHHHHHHh
Confidence            346899999999999999999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=0.00012  Score=46.42  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++|+|+|.+||||||+...+..
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999999875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.20  E-value=0.00012  Score=47.64  Aligned_cols=25  Identities=20%  Similarity=0.082  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....++|.|+||+|||++|..+|..
T Consensus        33 ~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          33 SQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=97.19  E-value=8.8e-05  Score=52.02  Aligned_cols=26  Identities=31%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      .+|.|-|+-||||||+++.|++.++.
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            57999999999999999999998753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.18  E-value=0.00015  Score=49.27  Aligned_cols=24  Identities=33%  Similarity=0.327  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...|.|+|+.|+||||+|+.+.++
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            457889999999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00013  Score=45.42  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+|||++..++..
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.18  E-value=9.1e-05  Score=50.04  Aligned_cols=24  Identities=33%  Similarity=0.617  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|+||.||||||+.+.|+-
T Consensus        29 ~Gei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          29 KGDVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHC
Confidence            456889999999999999999985

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=5.5e-05  Score=47.42  Aligned_cols=25  Identities=20%  Similarity=0.438  Sum_probs=21.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...++|+|+|.|++|||||..+|..
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhC
Confidence            3468999999999999999998854

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=0.00014  Score=46.86  Aligned_cols=21  Identities=19%  Similarity=0.165  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      .|+|+|+|+|||||+..+|..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            699999999999999999975

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00013  Score=46.71  Aligned_cols=22  Identities=27%  Similarity=0.486  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+||||||+...+..
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhh
Confidence            6899999999999999999875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00014  Score=45.55  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.++||||++..++..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4799999999999999998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.15  E-value=8.9e-05  Score=46.85  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+|+|+|.+||||||+..++..
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhc
Confidence            4567999999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00014  Score=45.36  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         3 ~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           3 YRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00014  Score=45.52  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00016  Score=45.15  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 iKi~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           3 VKLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            57999999999999999999863

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00017  Score=45.11  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           7 FKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999999985

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00014  Score=48.64  Aligned_cols=25  Identities=32%  Similarity=0.465  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+..+.|+||.||||||+.+.|+..
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.12  E-value=0.00014  Score=47.07  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++..+.|.|+||+|||++|..++.
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            456789999999999999977653

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00017  Score=45.08  Aligned_cols=23  Identities=39%  Similarity=0.709  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+|||++...+...
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCcCHHHHHHHHhCC
Confidence            47999999999999999998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00017  Score=44.64  Aligned_cols=22  Identities=23%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHh
Confidence            3799999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00017  Score=44.89  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00019  Score=44.86  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+++|||++..++..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999998865

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00011  Score=48.99  Aligned_cols=24  Identities=38%  Similarity=0.512  Sum_probs=21.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+..+.|+|+.||||||+.+.|+-
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            456889999999999999999985

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00019  Score=44.64  Aligned_cols=23  Identities=30%  Similarity=0.445  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+|||++..++..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            35899999999999999999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0002  Score=44.59  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.+|+|||++..++...
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999998753

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=97.06  E-value=0.00011  Score=51.53  Aligned_cols=26  Identities=27%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..+|.|-|+-||||||+++.|++.++
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC---
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998763

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00022  Score=44.86  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+|||++..++..
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00022  Score=44.84  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            47999999999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00023  Score=44.67  Aligned_cols=23  Identities=39%  Similarity=0.619  Sum_probs=20.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+|||++..++...
T Consensus         4 ~Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           4 YRVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhC
Confidence            58999999999999999998753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00025  Score=44.20  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.+|+|||++..++...
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhC
Confidence            368999999999999999988753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.01  E-value=0.00025  Score=44.30  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.00  E-value=0.00021  Score=44.83  Aligned_cols=21  Identities=24%  Similarity=0.264  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      .|+|+|.|++||||+..+|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999974

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00012  Score=45.93  Aligned_cols=22  Identities=27%  Similarity=0.456  Sum_probs=10.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+||||||+..++..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEEECCCCC-----------
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5899999999999999988864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00022  Score=44.82  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~   40 (119)
                      .|.|+|.+|+||||+..+|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999854

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00026  Score=44.91  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFA   38 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la   38 (119)
                      ..+|+|+|.+|||||++..++.
T Consensus         2 ~iKivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999983

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00026  Score=45.40  Aligned_cols=24  Identities=13%  Similarity=0.112  Sum_probs=20.4

Q ss_pred             ceEEEEcC-CCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGP-PGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~-pGsGKstla~~la~~~   41 (119)
                      .+++|+|. +|+||||++..||..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            58999999 5999999888888653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.0002  Score=51.15  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+++|+|+||+|||+++..||++
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999998875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=6.6e-05  Score=46.29  Aligned_cols=23  Identities=22%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.|++||||+..+|..+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00028  Score=44.74  Aligned_cols=23  Identities=17%  Similarity=0.281  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|.+|+|||++..++..
T Consensus         9 ~~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1           9 MLKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHhh
Confidence            46899999999999999999875

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.92  E-value=0.00037  Score=46.64  Aligned_cols=25  Identities=24%  Similarity=0.201  Sum_probs=21.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++..++|.|+||+|||+++..++..
T Consensus        34 ~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          34 GGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            4567899999999999998888753

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=96.91  E-value=0.00031  Score=45.92  Aligned_cols=31  Identities=19%  Similarity=0.174  Sum_probs=25.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLS   47 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is   47 (119)
                      ...++|.|||.+|||++|..|.+-++-.+++
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            3689999999999999999999877544443

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.91  E-value=0.00026  Score=47.59  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=22.3

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+|+|+|.||+||||+...|..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            4568999999999999999999974

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00045  Score=46.40  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=25.7

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG   49 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~   49 (119)
                      ..+..|+++|.=|+||||+|..||..+   |  +..+|+|
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            345678899999999999888887654   3  3445654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.0004  Score=43.38  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+++|.+|+|||++..++..
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHh
Confidence            36899999999999999999875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00039  Score=44.22  Aligned_cols=24  Identities=13%  Similarity=0.295  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+|+|+|.+|+|||++..++...
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            368999999999999999988753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00036  Score=43.52  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      .|.|+|.|++||||+..+|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999974

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00041  Score=43.82  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|.+|+|||++..++...
T Consensus         3 ~KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           3 CKIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            47899999999999999988763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.79  E-value=0.00033  Score=47.14  Aligned_cols=15  Identities=33%  Similarity=0.519  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q psy9244          20 AILLGPPGSGKGTQA   34 (119)
Q Consensus        20 i~i~G~pGsGKstla   34 (119)
                      ++|.|+|||||||++
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            688899999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00024  Score=44.45  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|+|+|.+|+|||++..++..
T Consensus         4 ~Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           4 FKLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4799999999999999988754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.77  E-value=0.00043  Score=49.42  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .|+|+||.||||||....+-+..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhhh
Confidence            58999999999999888887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.75  E-value=0.0003  Score=44.36  Aligned_cols=21  Identities=29%  Similarity=0.427  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      .|.|+|+|++||||+..+|..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999853

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.00048  Score=44.74  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +..+|.++|.+++|||||+.+|-.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHH
Confidence            347899999999999999999954

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.73  E-value=0.00029  Score=47.92  Aligned_cols=15  Identities=27%  Similarity=0.468  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q psy9244          20 AILLGPPGSGKGTQA   34 (119)
Q Consensus        20 i~i~G~pGsGKstla   34 (119)
                      ++|.|+|||||||++
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            788999999999864

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00055  Score=48.24  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=16.5

Q ss_pred             CceEEEEcCCCCCHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPL   36 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~   36 (119)
                      ....+|+|+||+||||+...
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHH
Confidence            35789999999999988744

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00063  Score=45.30  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=22.0

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +.+ ....+|.|+||+||||++..||..
T Consensus        26 ~~p-g~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          26 MVA-GTVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             EET-TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccC-CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            443 457889999999999999888764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00049  Score=45.28  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +..+|+|..||||||+.+.+.+.
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            57899999999999999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00075  Score=42.53  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.2

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      -.+|+++|.+|+|||++..++...
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhC
Confidence            378999999999999999988753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.61  E-value=0.00039  Score=43.68  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      .|.|+|.|+|||||+..+|..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999964

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.60  E-value=0.00066  Score=45.36  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~   40 (119)
                      -|+|.|++|+||+++|+.|.+.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHHh
Confidence            3899999999999999999754

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.51  E-value=0.00095  Score=43.77  Aligned_cols=24  Identities=21%  Similarity=0.123  Sum_probs=20.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .++|.|+|.|.+|||||..+|...
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhh
Confidence            346999999999999999998653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.50  E-value=0.00086  Score=42.22  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.8

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|.|+|.|.+|||||..+|.+
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHH
Confidence            45899999999999999999975

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.49  E-value=0.00085  Score=43.79  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|+|+|..||||||+.+++..
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999999864

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.46  E-value=0.0014  Score=44.40  Aligned_cols=28  Identities=25%  Similarity=0.284  Sum_probs=23.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      +...+++.||+++|||+++..|++-+|-
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            3457889999999999999999987753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.45  E-value=0.0011  Score=43.93  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ....+++|++|+||||+..+|..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCCHHHHHHhhcc
Confidence            45678999999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.0011  Score=44.85  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=25.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG   49 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~   49 (119)
                      ....+.|.|+|||||||+|-.++...     .+.|++..
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            34578899999999999999887643     34566554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0011  Score=41.72  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      -.+|+|+|..|||||++..++...
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            368999999999999999999764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.28  E-value=0.00096  Score=39.46  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             CCCCceEEEEcCCCCCHHHHHH
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAP   35 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~   35 (119)
                      -++..+++|.+++|||||.++-
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHH
Confidence            3567889999999999997663

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0022  Score=42.64  Aligned_cols=34  Identities=26%  Similarity=0.253  Sum_probs=24.1

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG   49 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~   49 (119)
                      ....|+++|.=|+||||++..||..+     .+..++.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            34566778999999999877776543     35555665

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.17  E-value=0.0014  Score=41.88  Aligned_cols=28  Identities=21%  Similarity=0.237  Sum_probs=22.7

Q ss_pred             EEEEcCCCCCHHHHHHHHHhHcC-ccccc
Q psy9244          20 AILLGPPGSGKGTQAPLFAKKYC-VCHLS   47 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~~~-~~~is   47 (119)
                      ++|+|+..||||..|..++...+ ..|+-
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiA   30 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIA   30 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEE
T ss_pred             EEEECCCCccHHHHHHHHHhcCCCcEEEE
Confidence            79999999999999999987654 33443

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.17  E-value=0.0015  Score=46.57  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFA   38 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la   38 (119)
                      .+.+|.|+|.||+||||+..+|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            46789999999999999999985

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0019  Score=44.27  Aligned_cols=26  Identities=23%  Similarity=0.466  Sum_probs=23.1

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .++.++.|.|++|+|||+++..+++.
T Consensus        41 grGQr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          41 GRGQRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             BTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred             cCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence            45689999999999999999999874

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.06  E-value=0.0021  Score=41.40  Aligned_cols=23  Identities=30%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|.|+|.+.+|||||+.+|..
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHH
Confidence            46899999999999999998864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.99  E-value=0.0022  Score=39.96  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      .+|+|+|..|+|||++..++...
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            58999999999999999998653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.002  Score=45.47  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=18.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+++|+|++|||||++...+..
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            45799999999999998765543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.98  E-value=0.0028  Score=42.84  Aligned_cols=25  Identities=32%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .+|.|+|..|+||||++.+|....|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4799999999999999999965444

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.97  E-value=0.0036  Score=40.16  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=20.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ..+|.|+|...+|||||+.+|..
T Consensus         8 ~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           8 EVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CeEEEEEEccCCcHHHHHHHHHh
Confidence            36899999999999999999964

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.93  E-value=0.0028  Score=43.05  Aligned_cols=26  Identities=15%  Similarity=-0.093  Sum_probs=22.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      -.+|.|+|..||||||++.+|...-|
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            35799999999999999999976544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=95.88  E-value=0.003  Score=41.46  Aligned_cols=27  Identities=15%  Similarity=0.078  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      .++|+++|...+||||++.+|....|.
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll~~~g~   35 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLLHDSKM   35 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            467999999999999999999765543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.00039  Score=43.42  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..+|+|+.||||||+..+|.--+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            45688999999999999997543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.69  E-value=0.0011  Score=44.05  Aligned_cols=24  Identities=17%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ....+|+|++|+||||+..+|...
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             cceEEEECCCCccHHHHHHhhccH
Confidence            456789999999999999998643

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.60  E-value=0.0057  Score=41.32  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=25.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~~   50 (119)
                      .+....|.|++|||||++|-.++...   |  +.+|+...
T Consensus        59 ~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            35577899999999999998877542   2  45555543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.57  E-value=0.0047  Score=40.28  Aligned_cols=26  Identities=23%  Similarity=0.241  Sum_probs=22.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      ..+|.|+|.-++||||++.+|-...|
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g   28 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRG   28 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHB
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcC
Confidence            46899999999999999998865444

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.55  E-value=0.0028  Score=42.58  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      .-+|+|+.|||||++..+|+-
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            458999999999999998864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.52  E-value=0.0047  Score=41.67  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=26.3

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc-----CccccchhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTGD   50 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~~   50 (119)
                      .+...-|.|++|||||++|..++...     .+.||+...
T Consensus        56 ~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~   95 (268)
T d1xp8a1          56 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH   95 (268)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc
Confidence            34577899999999999998887642     356666643

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.51  E-value=0.0054  Score=41.63  Aligned_cols=26  Identities=23%  Similarity=0.332  Sum_probs=22.8

Q ss_pred             CCCCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          14 ESTGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        14 p~~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      +...++|.|+|.|.|||||+-.+|..
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHC
Confidence            45678999999999999999999974

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0066  Score=40.09  Aligned_cols=23  Identities=30%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ...++|+||..+||||+.+.++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            35679999999999999998875

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.0043  Score=43.14  Aligned_cols=20  Identities=30%  Similarity=0.541  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHHh
Q psy9244          20 AILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~   39 (119)
                      -+|+|+.|||||++..+|+=
T Consensus        28 ~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999863

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.39  E-value=0.0055  Score=38.63  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=17.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      +++|++|.|||||.++-.++.
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHH
Confidence            578889999999997776664

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0055  Score=40.56  Aligned_cols=27  Identities=26%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..+|.++|...+||||++.+|.-..|.
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~   32 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGG   32 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSC
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCC
Confidence            369999999999999999999755543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.007  Score=41.06  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ++.++.|.|++|+|||+++..++..
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            4579999999999999999999754

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.27  E-value=0.0063  Score=38.56  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=19.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      .+|.|+|.+.+|||||..+|..
T Consensus         6 inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEEEeccCCcHHHHHHHHHh
Confidence            4789999999999999999963

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.24  E-value=0.0089  Score=40.05  Aligned_cols=29  Identities=31%  Similarity=0.480  Sum_probs=24.8

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ......+|.|+|.|-+||||+...|..+.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhccc
Confidence            44567889999999999999999998753

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.22  E-value=0.0081  Score=40.30  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~   39 (119)
                      .++|-|+|.|.+||||+-.+|..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHC
Confidence            57899999999999999999974

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=95.18  E-value=0.0074  Score=39.90  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=24.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc-----Cccccchh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY-----CVCHLSTG   49 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~-----~~~~is~~   49 (119)
                      .+|.|.|.=|+||||+|..||..+     .+..|++|
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            468889999999999988877643     34556665

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.99  E-value=0.01  Score=38.02  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=16.2

Q ss_pred             EEEcCCCCCHHHHHHHHHhH
Q psy9244          21 ILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        21 ~i~G~pGsGKstla~~la~~   40 (119)
                      +..|..|+||||+|..||..
T Consensus         6 v~s~KGGvGKTtia~nlA~~   25 (232)
T d1hyqa_           6 VASGKGGTGKTTITANLGVA   25 (232)
T ss_dssp             EEESSSCSCHHHHHHHHHHH
T ss_pred             EECCCCCChHHHHHHHHHHH
Confidence            44489999999999888764

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.90  E-value=0.013  Score=37.45  Aligned_cols=25  Identities=24%  Similarity=0.260  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .+.+|..++|+|||.++-.++.+++
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred             CCcEEEeCCCCCceehHHhHHHHhc
Confidence            4678889999999999999988875

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.86  E-value=0.0098  Score=38.98  Aligned_cols=21  Identities=29%  Similarity=0.268  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHHh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~   39 (119)
                      .++|+||..+||||+.+.++-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            579999999999999998874

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.82  E-value=0.0064  Score=40.34  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCV   43 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~   43 (119)
                      ..+|+|+|...+||||++.+|....|.
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll~~~g~   50 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNILFLTGM   50 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHHHHTTS
T ss_pred             ceEEEEEeeCCCCHHHHHHHHHHHcCC
Confidence            457999999999999999999765554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.45  E-value=0.015  Score=38.90  Aligned_cols=33  Identities=18%  Similarity=0.188  Sum_probs=22.9

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc---C--ccccchh
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY---C--VCHLSTG   49 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~---~--~~~is~~   49 (119)
                      +.+|.|.|.=|+||||+|..||..+   |  +..|++|
T Consensus         2 Mr~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            3467789999999999777666532   3  4445654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.38  E-value=0.01  Score=41.31  Aligned_cols=27  Identities=15%  Similarity=0.121  Sum_probs=22.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHcC
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKYC   42 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~~   42 (119)
                      .-.+|.|+|..++||||++.+|-...|
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g   42 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAG   42 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHB
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCC
Confidence            345799999999999999999976554

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.35  E-value=0.02  Score=36.61  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=18.3

Q ss_pred             ceEEEE-cCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILL-GPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~-G~pGsGKstla~~la~~   40 (119)
                      ..|.|+ +.-|+||||++..||..
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~   26 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVA   26 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHH
Confidence            456566 77899999999988864

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.26  E-value=0.0069  Score=38.49  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=16.6

Q ss_pred             CceEEEEcCCCCCHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPL   36 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~   36 (119)
                      ..++++.+|+|||||+.+..
T Consensus        40 ~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHHH
Confidence            45789999999999987643

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.00  E-value=0.017  Score=39.21  Aligned_cols=22  Identities=23%  Similarity=0.259  Sum_probs=19.5

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      +.|.|+|.|.+||||+-.+|..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            4689999999999999999954

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=93.87  E-value=0.024  Score=42.80  Aligned_cols=26  Identities=19%  Similarity=0.275  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +...|+|.|-+|||||+-++.+-+.+
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999887654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.85  E-value=0.022  Score=38.29  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      +.|+|+|...|||||+..+|..
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG   46 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVG   46 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCHHHHHHHHhC
Confidence            4799999999999999999973

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.81  E-value=0.025  Score=42.91  Aligned_cols=27  Identities=15%  Similarity=0.230  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +....|+|.|-+|||||+-++.+-+.+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999887654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.62  E-value=0.023  Score=38.58  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.7

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++.++.|.|++|+|||+++..++.
T Consensus        67 ~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          67 RGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             TTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEeecCCCCChHHHHHHHHH
Confidence            457899999999999999887764

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.53  E-value=0.03  Score=42.51  Aligned_cols=26  Identities=15%  Similarity=0.296  Sum_probs=22.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +...|+|.|-+|||||+-++.+-+.+
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999887643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.40  E-value=0.026  Score=37.74  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=20.0

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHh
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~   39 (119)
                      +.|+|+|.-.|||||+..+|..
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg   48 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVG   48 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHT
T ss_pred             CeEEEEcCCCCCHHHHHHHHhC
Confidence            4799999999999999999974

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.37  E-value=0.03  Score=43.04  Aligned_cols=26  Identities=15%  Similarity=0.365  Sum_probs=21.9

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +...|+|.|-+|||||+-++.+-+.+
T Consensus       122 ~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         122 ENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            45689999999999999998876654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.36  E-value=0.016  Score=37.63  Aligned_cols=40  Identities=10%  Similarity=0.001  Sum_probs=25.5

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhH-----cCccccch-hHHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLST-GDMLRAEV   56 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~-~~l~~~~~   56 (119)
                      +..+++++|+|||||+.+-..+..     ..+.++.. ..|..+..
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~  103 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAA  103 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHH
Confidence            457899999999999876555432     13444443 44555543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=93.18  E-value=0.037  Score=42.07  Aligned_cols=27  Identities=22%  Similarity=0.375  Sum_probs=22.6

Q ss_pred             CCCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          15 STGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        15 ~~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .....|+|.|-+|||||+-++.+-+.+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356789999999999999998886643

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.11  E-value=0.024  Score=38.18  Aligned_cols=23  Identities=26%  Similarity=0.238  Sum_probs=20.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..|.|+|+.+|||||+...|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            46789999999999999999864

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.048  Score=35.85  Aligned_cols=37  Identities=24%  Similarity=0.175  Sum_probs=25.8

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~   52 (119)
                      .+...+|.|..|||||.++-..+..     +.+.++....++
T Consensus        75 ~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~L  116 (233)
T d2eyqa3          75 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL  116 (233)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHH
T ss_pred             CccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHh
Confidence            4567899999999999998776643     334455554433

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.82  E-value=0.037  Score=42.46  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=22.2

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ....|+|.|-+|||||+-++.+-+.+
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            45789999999999999998887643

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.73  E-value=0.027  Score=38.06  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAK   39 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~   39 (119)
                      ++.++.|+|++|+|||+++..+..
T Consensus        66 ~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          66 RGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             CCceEeeccCCCCChHHHHHHHHh
Confidence            567899999999999999976543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.039  Score=37.89  Aligned_cols=19  Identities=37%  Similarity=0.607  Sum_probs=15.9

Q ss_pred             CceEEEEcCCCCCHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAP   35 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~   35 (119)
                      .-.-++.|.+|+|||||+.
T Consensus        14 ~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          14 GDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCccccee
Confidence            4456899999999999874

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.59  E-value=0.039  Score=38.03  Aligned_cols=20  Identities=30%  Similarity=0.551  Sum_probs=16.5

Q ss_pred             CCceEEEEcCCCCCHHHHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAP   35 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~   35 (119)
                      ....-++.|.+|+||||++.
T Consensus        13 ~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHHC
T ss_pred             CCCEEEEEccCCCCccccee
Confidence            34456899999999999984

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=92.15  E-value=0.029  Score=37.18  Aligned_cols=20  Identities=25%  Similarity=0.164  Sum_probs=16.7

Q ss_pred             CCCCCceEEEEcCCCCCHHH
Q psy9244          13 HESTGVNAILLGPPGSGKGT   32 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKst   32 (119)
                      .-.+...++|.+|+|||||+
T Consensus         5 ~~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           5 IFRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSSTTCEEEECCCTTSSTTT
T ss_pred             HhhcCCcEEEEECCCCCHHH
Confidence            44567788999999999996

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.97  E-value=0.038  Score=38.05  Aligned_cols=19  Identities=37%  Similarity=0.607  Sum_probs=16.1

Q ss_pred             CceEEEEcCCCCCHHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAP   35 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~   35 (119)
                      .-.-++.|.+|+|||||+.
T Consensus        14 ~~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTC
T ss_pred             CCEEEEEccCCCCcccccc
Confidence            4567899999999999875

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.90  E-value=0.062  Score=32.52  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=19.4

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      +..=+|+||..|||||-.-..+.+|
T Consensus         7 G~l~lI~GpMfSGKTteLi~~~~~~   31 (141)
T d1xx6a1           7 GWVEVIVGPMYSGKSEELIRRIRRA   31 (141)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eeEEEEEeccccHHHHHHHHHHHHh
Confidence            3455789999999999777776654

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=91.10  E-value=0.084  Score=31.78  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=15.6

Q ss_pred             EEEEcCCCCCHHHHHHHHHhH
Q psy9244          20 AILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        20 i~i~G~pGsGKstla~~la~~   40 (119)
                      =+++||-.|||||-.-..+.+
T Consensus         5 ~~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           5 EFITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEccccCHHHHHHHHHHHH
Confidence            478999999999954444444

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.13  Score=30.55  Aligned_cols=24  Identities=29%  Similarity=0.420  Sum_probs=18.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..-+|+||-.|||||-.-..+.++
T Consensus         3 ~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           3 QIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEecccCHHHHHHHHHHHHH
Confidence            345789999999999766665543

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.72  E-value=0.08  Score=35.37  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=25.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhH-----cCccccchhHHH
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKK-----YCVCHLSTGDML   52 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~-----~~~~~is~~~l~   52 (119)
                      .+..-+|.|-.|||||-++-..+..     +.+.++...+++
T Consensus       103 ~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~L  144 (264)
T d1gm5a3         103 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL  144 (264)
T ss_dssp             SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHH
T ss_pred             CcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhh
Confidence            4567799999999999988766532     445555554433

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.66  E-value=0.21  Score=27.92  Aligned_cols=28  Identities=14%  Similarity=0.191  Sum_probs=23.8

Q ss_pred             CCCCCceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          13 HESTGVNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        13 ~p~~~~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ...+..+|.|+|--|+|-|.+|+.|.++
T Consensus         4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~   31 (96)
T d1p3da1           4 EMRRVQQIHFIGIGGAGMSGIAEILLNE   31 (96)
T ss_dssp             CCTTCCEEEEETTTSTTHHHHHHHHHHH
T ss_pred             cchhCCEEEEEEECHHHHHHHHHHHHhC
Confidence            3456778999999999999999988764

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=89.70  E-value=0.18  Score=29.47  Aligned_cols=31  Identities=26%  Similarity=0.147  Sum_probs=26.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHcCccccchh
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKYCVCHLSTG   49 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~~~~~is~~   49 (119)
                      .|++-||-++=|||+|..|++++.++.+.-.
T Consensus         2 liilegpdccfkstvaaklskelkypiikgs   32 (164)
T d2axpa1           2 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS   32 (164)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHHHTCCEEECC
T ss_pred             eEEEeCCchhhHHHHHHHHHhhhcCceecCc
Confidence            4788899999999999999999998888543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=86.93  E-value=0.11  Score=31.71  Aligned_cols=32  Identities=31%  Similarity=0.517  Sum_probs=22.0

Q ss_pred             CCceEEEEcCCCC-CHHHHHHHHHh---HcCccccch
Q psy9244          16 TGVNAILLGPPGS-GKGTQAPLFAK---KYCVCHLST   48 (119)
Q Consensus        16 ~~~~i~i~G~pGs-GKstla~~la~---~~~~~~is~   48 (119)
                      .|.+|.|.|..|| |++|+- .+.+   +|.+.-++.
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~-Vi~~~~d~f~v~~lsa   36 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLD-LIERNLDRYQVIALTA   36 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHH-HHHHTGGGEEEEEEEE
T ss_pred             CCcEEEEECCCcHHHHHHHH-HHHcCCCCcEEEEEEe
Confidence            3679999999999 999874 3332   355554543

>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium smegmatis [TaxId: 1772]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: PAPS sulfotransferase
domain: Stf0 sulfotransferase
species: Mycobacterium smegmatis [TaxId: 1772]

Probab=86.85  E-value=0.4  Score=29.60  Aligned_cols=26  Identities=12%  Similarity=0.046  Sum_probs=22.5

Q ss_pred             CCceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          16 TGVNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        16 ~~~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ++..++|+|.|-||-|.+.+.|++.-
T Consensus         2 ~~~~~~I~g~pRSGTT~L~~~L~~~p   27 (265)
T d1texa_           2 HPTAYLVLASQRSGSTLLVESLRATG   27 (265)
T ss_dssp             CCCEEEEEECTTSTHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCChHHHHHHHHHcCc
Confidence            45679999999999999999998753

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.79  E-value=0.19  Score=34.90  Aligned_cols=16  Identities=19%  Similarity=0.378  Sum_probs=13.3

Q ss_pred             eEEEEcCCCCCHHHHH
Q psy9244          19 NAILLGPPGSGKGTQA   34 (119)
Q Consensus        19 ~i~i~G~pGsGKstla   34 (119)
                      ..+|.++.|||||+..
T Consensus        18 ~~lv~A~AGsGKT~~l   33 (485)
T d1w36b1          18 ERLIEASAGTGKTFTI   33 (485)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEEcCchHHHHHH
Confidence            4788899999999754

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=85.44  E-value=0.18  Score=31.51  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=18.1

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      ..+++.-|+|||||..+......
T Consensus        41 ~~vlv~apTGsGKT~~~~~~~~~   63 (206)
T d1oywa2          41 RDCLVVMPTGGGKSLCYQIPALL   63 (206)
T ss_dssp             CCEEEECSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCCCCcchhhhhhhh
Confidence            57899999999999887555443

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.68  E-value=0.44  Score=29.94  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=17.2

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      .-|+|+||   ||+|+.++|.+.+
T Consensus        10 Rpivi~Gp---~K~ti~~~L~~~~   30 (199)
T d1kjwa2          10 RPIIILGP---TKDRANDDLLSEF   30 (199)
T ss_dssp             CCEEEEST---THHHHHHHHHHHC
T ss_pred             CCEEEECc---CHHHHHHHHHHhC
Confidence            44778886   6999999999875

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=84.59  E-value=0.34  Score=32.20  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=25.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHHhHc----C---ccccchhHHHHHHH
Q psy9244          19 NAILLGPPGSGKGTQAPLFAKKY----C---VCHLSTGDMLRAEV   56 (119)
Q Consensus        19 ~i~i~G~pGsGKstla~~la~~~----~---~~~is~~~l~~~~~   56 (119)
                      +.++.-|.|+|||.++-.++..+    +   +.++....|+.+..
T Consensus       130 ~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~  174 (282)
T d1rifa_         130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMA  174 (282)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHH
T ss_pred             CceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHH
Confidence            56777899999999888777432    2   23334456666654

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.69  E-value=3.4  Score=25.55  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=16.9

Q ss_pred             ceEEEEcCCCCCHHHHHHHHH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFA   38 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la   38 (119)
                      ..+++..++|||||.......
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~   63 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPL   63 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccc
Confidence            468899999999998775544

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.58  E-value=0.15  Score=32.00  Aligned_cols=17  Identities=24%  Similarity=0.366  Sum_probs=14.4

Q ss_pred             CceEEEEcCCCCCHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQ   33 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstl   33 (119)
                      +..+++..++|||||..
T Consensus        38 G~dvii~a~TGSGKTla   54 (209)
T d1q0ua_          38 GESMVGQSQTGTGKTHA   54 (209)
T ss_dssp             TCCEEEECCSSHHHHHH
T ss_pred             CCCeEeeccccccccee
Confidence            35799999999999973

>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: PAPS sulfotransferase
domain: Heparan sulfate 3-O-sulfotransferase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.44  E-value=0.37  Score=30.70  Aligned_cols=23  Identities=13%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhH
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKK   40 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~   40 (119)
                      +.++|+|.|-||-|.+...|++.
T Consensus         6 P~~~iiG~prsGTT~L~~iL~~h   28 (258)
T d1vkja_           6 PQTIIIGVRKGGTRALLEMLSLH   28 (258)
T ss_dssp             CSEEEEECTTSSHHHHHHHHHTS
T ss_pred             CCEEEECCCCchHHHHHHHHHcC
Confidence            35899999999999999999864

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=83.12  E-value=0.57  Score=33.02  Aligned_cols=31  Identities=19%  Similarity=0.244  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHcC--ccccch
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKYC--VCHLST   48 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~~--~~~is~   48 (119)
                      ...+|.|.+|||||.+...+.++.+  +.+++.
T Consensus        32 ~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~   64 (413)
T d1t5la1          32 KHQTLLGATGTGKTFTISNVIAQVNKPTLVIAH   64 (413)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred             CcEEEeCCCCcHHHHHHHHHHHHhCCCEEEEeC
Confidence            4578999999999999999988875  344444

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.42  E-value=0.34  Score=30.52  Aligned_cols=17  Identities=24%  Similarity=0.462  Sum_probs=14.3

Q ss_pred             CceEEEEcCCCCCHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQ   33 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstl   33 (119)
                      +..+++..++|||||.-
T Consensus        38 g~dvl~~A~TGsGKTla   54 (207)
T d1t6na_          38 GMDVLCQAKSGMGKTAV   54 (207)
T ss_dssp             TCCEEEECCTTSCHHHH
T ss_pred             CCCeEEEeccccccccc
Confidence            45799999999999763

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.40  E-value=0.41  Score=32.32  Aligned_cols=18  Identities=22%  Similarity=0.250  Sum_probs=15.4

Q ss_pred             CceEEEEcCCCCCHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQA   34 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla   34 (119)
                      .-.|+..|..|||||+..
T Consensus        76 n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          76 NGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             CEEEEEECSTTSSHHHHH
T ss_pred             CcceeeecccCCCCceec
Confidence            457889999999999985

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.02  E-value=0.32  Score=30.42  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=16.3

Q ss_pred             ceEEEEcCCCCCHHHHHHHHHhHc
Q psy9244          18 VNAILLGPPGSGKGTQAPLFAKKY   41 (119)
Q Consensus        18 ~~i~i~G~pGsGKstla~~la~~~   41 (119)
                      ..|.|+|-  .||||.+..++.-+
T Consensus        13 ~~I~ITGT--nGKTTt~~~l~~iL   34 (215)
T d1p3da3          13 HGIAVAGT--HGKTTTTAMISMIY   34 (215)
T ss_dssp             EEEEEESS--SCHHHHHHHHHHHH
T ss_pred             CEEEEECC--CCHHHHHHHHHHHH
Confidence            45777774  49999999887643

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.88  E-value=0.21  Score=34.63  Aligned_cols=38  Identities=16%  Similarity=0.158  Sum_probs=23.3

Q ss_pred             CceEEEEcCCCCCHHHHHHHHHhHcCccccchhHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQAPLFAKKYCVCHLSTGDMLRA   54 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla~~la~~~~~~~is~~~l~~~   54 (119)
                      .-.|+..|..|||||+..---.+..|+....+.+|+..
T Consensus       125 n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~  162 (368)
T d2ncda_         125 NICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS  162 (368)
T ss_dssp             EEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHH
T ss_pred             ceeEEeeccCCCccceEecccccccchhhHHHHHHhhh
Confidence            34688899999999987421111235555555555544

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.86  E-value=0.43  Score=30.24  Aligned_cols=18  Identities=22%  Similarity=0.390  Sum_probs=15.0

Q ss_pred             CceEEEEcCCCCCHHHHH
Q psy9244          17 GVNAILLGPPGSGKGTQA   34 (119)
Q Consensus        17 ~~~i~i~G~pGsGKstla   34 (119)
                      +..+++..++|||||...
T Consensus        47 g~dvl~~a~TGsGKT~a~   64 (212)
T d1qdea_          47 GHDVLAQAQSGTGKTGTF   64 (212)
T ss_dssp             TCCEEEECCTTSSHHHHH
T ss_pred             CCCEEeecccccchhhhh
Confidence            457999999999998743